Query 047862
Match_columns 769
No_of_seqs 352 out of 1921
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 1E-163 3E-168 1444.3 69.4 739 7-764 29-778 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 8E-141 2E-145 1255.1 65.3 681 19-762 16-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 5.2E-64 1.1E-68 553.1 23.9 288 100-430 79-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 7.1E-60 1.5E-64 507.7 17.4 225 101-354 69-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 5.3E-47 1.1E-51 410.6 21.9 220 100-358 74-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 2.4E-38 5.2E-43 328.0 13.3 215 392-622 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 1.1E-20 2.4E-25 159.2 6.6 69 689-758 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.6 0.0069 1.5E-07 53.8 7.5 62 671-755 19-82 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.1 0.057 1.2E-06 46.1 6.2 67 671-755 5-74 (78)
10 PF12690 BsuPI: Intracellular 93.9 0.32 7E-06 42.1 8.0 67 673-753 2-81 (82)
11 COG0486 ThdF Predicted GTPase 90.7 5.4 0.00012 45.3 14.6 226 243-525 60-332 (454)
12 PF14874 PapD-like: Flagellar- 90.3 2.2 4.7E-05 38.1 9.3 76 671-752 20-95 (102)
13 PRK13202 ureB urease subunit b 84.9 1.6 3.5E-05 39.0 4.7 51 673-727 21-83 (104)
14 PRK13203 ureB urease subunit b 84.6 1.7 3.6E-05 38.8 4.7 52 672-727 19-82 (102)
15 PF13473 Cupredoxin_1: Cupredo 83.4 2.9 6.2E-05 37.6 6.0 49 674-755 44-93 (104)
16 cd00407 Urease_beta Urease bet 82.5 2.4 5.2E-05 37.8 4.8 52 672-727 19-82 (101)
17 TIGR00192 urease_beta urease, 81.6 2.6 5.7E-05 37.5 4.7 52 672-727 19-82 (101)
18 PF00699 Urease_beta: Urease b 80.2 3.2 6.9E-05 37.0 4.7 53 671-727 17-81 (100)
19 COG1470 Predicted membrane pro 78.0 6.8 0.00015 44.2 7.6 74 671-758 284-360 (513)
20 PRK13201 ureB urease subunit b 77.2 4.2 9E-05 38.0 4.8 52 672-727 19-82 (136)
21 PRK13205 ureB urease subunit b 76.1 4.4 9.5E-05 38.7 4.7 52 672-727 19-82 (162)
22 PRK13204 ureB urease subunit b 75.8 4.5 9.8E-05 38.7 4.7 52 672-727 42-105 (159)
23 PF06030 DUF916: Bacterial pro 75.3 10 0.00022 35.4 7.0 59 671-731 27-104 (121)
24 PRK13198 ureB urease subunit b 74.4 5.2 0.00011 38.3 4.7 52 672-727 47-110 (158)
25 PF05506 DUF756: Domain of unk 72.2 18 0.0004 31.5 7.5 52 674-738 21-73 (89)
26 COG0832 UreB Urea amidohydrola 70.9 6.1 0.00013 35.1 4.0 52 672-727 19-82 (106)
27 COG1470 Predicted membrane pro 70.7 15 0.00033 41.6 7.9 70 671-757 397-468 (513)
28 PF00345 PapD_N: Pili and flag 69.6 11 0.00025 34.7 6.0 54 674-730 17-73 (122)
29 TIGR02695 azurin azurin. Azuri 69.5 15 0.00032 34.4 6.4 53 674-730 26-99 (125)
30 PRK13192 bifunctional urease s 67.6 7.8 0.00017 39.0 4.5 52 672-727 128-191 (208)
31 PF06280 DUF1034: Fn3-like dom 65.7 10 0.00023 34.5 4.8 60 671-730 8-80 (112)
32 PRK13986 urease subunit alpha; 64.1 10 0.00022 38.7 4.5 52 672-727 124-187 (225)
33 PF07385 DUF1498: Protein of u 60.8 7.6 0.00016 39.8 3.1 66 678-758 111-187 (225)
34 PF00927 Transglut_C: Transglu 59.9 21 0.00044 32.2 5.5 60 671-731 15-77 (107)
35 PF04744 Monooxygenase_B: Mono 58.9 23 0.00049 39.1 6.4 54 671-729 263-334 (381)
36 PF14796 AP3B1_C: Clathrin-ada 58.9 26 0.00057 33.7 6.2 56 671-731 85-141 (145)
37 PF09624 DUF2393: Protein of u 56.8 27 0.00058 33.6 6.1 60 671-730 62-133 (149)
38 cd00938 HisRS_RNA HisRS_RNA bi 48.5 36 0.00078 26.0 4.1 30 330-359 13-42 (45)
39 PF14016 DUF4232: Protein of u 48.1 46 0.001 31.2 6.1 57 672-730 19-82 (131)
40 cd03708 GTPBP_III Domain III o 47.4 1.1E+02 0.0023 26.2 7.8 77 672-755 5-82 (87)
41 TIGR01759 MalateDH-SF1 malate 44.2 17 0.00038 39.8 2.9 58 471-532 75-134 (323)
42 PF00056 Ldh_1_N: lactate/mala 42.5 6.3 0.00014 37.7 -0.8 55 471-532 65-123 (141)
43 COG1160 Predicted GTPases [Gen 42.2 55 0.0012 37.3 6.3 46 467-525 75-120 (444)
44 PF05753 TRAP_beta: Translocon 42.0 1.4E+02 0.0031 29.9 8.7 83 670-758 37-127 (181)
45 PF06165 Glyco_transf_36: Glyc 42.0 12 0.00026 34.2 1.0 18 611-628 31-48 (110)
46 PRK00286 xseA exodeoxyribonucl 40.4 1.5E+02 0.0032 34.0 9.8 58 464-533 179-238 (438)
47 TIGR00450 mnmE_trmE_thdF tRNA 39.3 3.9E+02 0.0086 30.7 13.0 43 244-288 51-98 (442)
48 TIGR01756 LDH_protist lactate 39.1 20 0.00043 39.2 2.3 57 471-533 56-116 (313)
49 COG0039 Mdh Malate/lactate deh 38.4 24 0.00052 38.5 2.7 58 471-533 65-124 (313)
50 TIGR01334 modD putative molybd 38.1 2.2E+02 0.0049 30.5 10.0 31 170-210 105-135 (277)
51 TIGR01451 B_ant_repeat conserv 35.7 49 0.0011 26.0 3.4 19 671-689 12-30 (53)
52 TIGR01772 MDH_euk_gproteo mala 34.7 39 0.00084 36.9 3.7 55 471-532 63-121 (312)
53 PLN02303 urease 34.6 45 0.00098 40.9 4.5 51 673-727 150-212 (837)
54 COG1361 S-layer domain [Cell e 34.6 99 0.0021 36.0 7.3 58 672-730 168-226 (500)
55 PLN00135 malate dehydrogenase 33.2 28 0.00062 37.9 2.3 56 471-533 54-114 (309)
56 PRK09918 putative fimbrial cha 33.0 1.2E+02 0.0027 31.5 6.9 51 674-729 41-93 (230)
57 PF06205 GT36_AF: Glycosyltran 32.7 30 0.00066 30.4 2.0 26 703-730 59-84 (90)
58 TIGR03096 nitroso_cyanin nitro 32.5 1.3E+02 0.0028 28.7 6.3 16 715-730 95-110 (135)
59 PRK05442 malate dehydrogenase; 32.5 28 0.00061 38.3 2.1 57 471-533 76-136 (326)
60 PRK13533 7-cyano-7-deazaguanin 32.3 37 0.00081 39.4 3.2 47 275-323 75-121 (487)
61 PF11611 DUF4352: Domain of un 32.3 73 0.0016 28.9 4.7 60 671-730 36-101 (123)
62 TIGR03079 CH4_NH3mon_ox_B meth 31.7 93 0.002 34.4 5.8 60 671-730 282-354 (399)
63 PF01345 DUF11: Domain of unkn 31.6 54 0.0012 27.4 3.3 20 670-689 40-59 (76)
64 TIGR00237 xseA exodeoxyribonuc 30.9 2.7E+02 0.0058 32.0 9.8 57 465-533 174-233 (432)
65 PF06858 NOG1: Nucleolar GTP-b 30.9 1.4E+02 0.003 24.2 5.2 24 502-525 31-55 (58)
66 PRK05086 malate dehydrogenase; 30.8 37 0.00081 37.0 2.8 56 471-532 65-123 (312)
67 cd00300 LDH_like L-lactate deh 30.5 31 0.00067 37.4 2.0 57 471-532 62-120 (300)
68 cd01337 MDH_glyoxysomal_mitoch 30.4 36 0.00077 37.2 2.5 55 471-532 64-122 (310)
69 PF07233 DUF1425: Protein of u 30.3 3E+02 0.0064 24.3 7.9 58 671-730 24-82 (94)
70 cd01338 MDH_choloroplast_like 29.9 39 0.00085 37.1 2.7 56 471-532 74-133 (322)
71 PLN00112 malate dehydrogenase 29.5 29 0.00064 39.7 1.7 56 471-533 172-232 (444)
72 TIGR01757 Malate-DH_plant mala 29.2 30 0.00064 39.0 1.7 57 471-533 116-176 (387)
73 PF11906 DUF3426: Protein of u 29.1 2E+02 0.0043 27.4 7.2 60 671-730 68-136 (149)
74 cd00704 MDH Malate dehydrogena 28.4 39 0.00085 37.1 2.4 55 471-532 72-131 (323)
75 COG2003 RadC DNA repair protei 27.9 47 0.001 34.3 2.7 51 240-291 158-209 (224)
76 cd05294 LDH-like_MDH_nadp A la 27.6 50 0.0011 35.9 3.1 26 671-698 246-271 (309)
77 PLN02602 lactate dehydrogenase 27.2 37 0.00081 37.7 2.0 55 471-532 101-159 (350)
78 cd06557 KPHMT-like Ketopantoat 26.6 4.7E+02 0.01 27.7 10.0 43 240-294 4-46 (254)
79 cd09030 DUF1425 Putative perip 26.3 4.6E+02 0.01 23.2 9.1 58 671-730 32-90 (101)
80 PRK05291 trmE tRNA modificatio 26.2 7.8E+02 0.017 28.3 12.6 36 243-279 58-98 (449)
81 TIGR01763 MalateDH_bact malate 25.9 45 0.00097 36.3 2.3 53 473-532 67-123 (305)
82 cd01857 HSR1_MMR1 HSR1/MMR1. 25.4 1.4E+02 0.0029 28.1 5.3 18 467-484 3-20 (141)
83 PF10087 DUF2325: Uncharacteri 25.3 2E+02 0.0043 25.3 6.0 40 469-523 42-81 (97)
84 PRK15299 fimbrial chaperone pr 24.9 1.6E+02 0.0034 30.6 6.0 54 674-729 39-94 (227)
85 PRK00066 ldh L-lactate dehydro 24.4 48 0.001 36.2 2.2 55 471-532 69-127 (315)
86 PF00553 CBM_2: Cellulose bind 23.4 1.1E+02 0.0025 27.2 4.1 60 670-730 12-84 (101)
87 cd05291 HicDH_like L-2-hydroxy 23.3 50 0.0011 35.8 2.0 55 472-533 65-123 (306)
88 PRK13556 azoreductase; Provisi 23.2 1.7E+02 0.0037 29.6 5.9 37 467-514 81-117 (208)
89 PF09851 SHOCT: Short C-termin 22.9 1.5E+02 0.0032 20.6 3.6 25 328-352 6-30 (31)
90 PRK15249 fimbrial chaperone pr 22.8 1.6E+02 0.0036 31.1 5.7 54 674-729 45-103 (253)
91 PF00703 Glyco_hydro_2: Glycos 22.6 1.9E+02 0.004 25.2 5.4 63 671-739 18-81 (110)
92 TIGR01771 L-LDH-NAD L-lactate 22.5 46 0.001 36.1 1.6 55 471-532 60-118 (299)
93 PRK13555 azoreductase; Provisi 21.5 1.7E+02 0.0037 29.9 5.4 38 466-514 80-117 (208)
94 PTZ00325 malate dehydrogenase; 21.5 62 0.0013 35.5 2.3 57 470-532 71-130 (321)
95 cd01336 MDH_cytoplasmic_cytoso 21.4 70 0.0015 35.1 2.7 58 471-532 74-133 (325)
96 PF13598 DUF4139: Domain of un 21.3 1.9E+02 0.0042 31.2 6.2 57 672-730 243-313 (317)
97 PRK06096 molybdenum transport 21.3 3.7E+02 0.0081 29.0 8.1 31 170-210 106-136 (284)
98 cd05290 LDH_3 A subgroup of L- 21.1 53 0.0012 35.8 1.7 57 471-532 64-124 (307)
99 PF09544 DUF2381: Protein of u 21.0 5.1E+02 0.011 28.0 9.1 58 671-730 202-260 (289)
100 TIGR01758 MDH_euk_cyt malate d 20.9 70 0.0015 35.1 2.6 55 471-532 71-130 (324)
101 TIGR03352 VI_chp_3 type VI sec 20.9 1.3E+02 0.0029 29.0 4.2 25 706-730 80-104 (146)
102 TIGR02231 conserved hypothetic 20.8 2.2E+02 0.0049 33.3 7.0 57 672-730 443-516 (525)
103 PF02450 LCAT: Lecithin:choles 20.8 1.1E+02 0.0023 34.5 4.1 60 506-565 107-174 (389)
104 PRK15188 fimbrial chaperone pr 20.8 2.2E+02 0.0048 29.7 6.1 50 674-730 44-98 (228)
105 PF00009 GTP_EFTU: Elongation 20.6 2.9E+02 0.0062 27.2 6.8 47 466-525 84-130 (188)
106 PF02601 Exonuc_VII_L: Exonucl 20.1 4E+02 0.0087 28.9 8.4 58 464-533 58-121 (319)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=1.5e-163 Score=1444.34 Aligned_cols=739 Identities=48% Similarity=0.898 Sum_probs=634.9
Q ss_pred ccccCcchhhhcccCCCCCcccCCCCChHHHHHHHHhhcCHHHHHHhhcCcccCcCCCCcchhHHHhhhccccccccccC
Q 047862 7 TYVCDPARFAELKLKLSDFAFCDAKLPYPVRAKDLVDRMTLAEKVQQLGDLAYGVPRLGLPLYEWWSEALHGVSYIGRRT 86 (769)
Q Consensus 7 ~~~~~~~~f~d~~~~~~~~~~~d~~~~~~~rv~~ll~~MTleEKv~ql~~~~~~i~~lgi~~~~~~~~~~~gv~~~~~~~ 86 (769)
.|.||. ++.+.+||||+++++++|+++||++||||||++||.+...+++|||||.+.||+|++||++..+
T Consensus 29 ~~~c~~-------~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~--- 98 (779)
T PLN03080 29 QFPCKP-------PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNG--- 98 (779)
T ss_pred CcCCCC-------ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCC---
Confidence 455875 4566799999999999999999999999999999998888999999999999999999997554
Q ss_pred CCCCccccC-CCCCCcccCchhhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcceeecceecccCCCCCCccCCCcCC
Q 047862 87 NTPPGTHFD-SEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTFWSPNINVVRDPRWGRVMETPGE 165 (769)
Q Consensus 87 ~~~~g~~~~-~~~~~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~G~~~laP~vdl~r~p~~gR~~e~fge 165 (769)
+|+.+. +.+.++|.||++|++|||||++|++++|+++|+|+|+++|.+.+|+++|+|++||.|||||||++|||||
T Consensus 99 ---~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGE 175 (779)
T PLN03080 99 ---PGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGE 175 (779)
T ss_pred ---CccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCC
Confidence 577663 3355799999999999999999999999999999999976655577889999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhccccCCCCccccCCCCCeeeEeecccccCccCCCCCCccccccccCCHHHHHHhccHHHHHHHH
Q 047862 166 DPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVR 245 (769)
Q Consensus 166 Dp~l~~~~a~a~v~GlQ~~~g~~~~~~~~~~~~~V~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~ 245 (769)
||+|+++|+.|||+|||+.+......+...++.+|+||+||||||+++.+.+..|...++.+++++|+|+||+||++||+
T Consensus 176 DP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~ 255 (779)
T PLN03080 176 DPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQ 255 (779)
T ss_pred CHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHH
Confidence 99999999999999999841000000000124569999999999998877777888889999999999999999999999
Q ss_pred cCCCceeeecccccCCccccCCHHHHHHHHHhhcCCCeEEEcCchhHHHhhhhcccccCCHHHHHHHHHHcCCCCCCCcc
Q 047862 246 EGDASSVMCSYNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDY 325 (769)
Q Consensus 246 ~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~ 325 (769)
+|.+++||||||++||+|||.|++||++ ||+||||+|+|||||++|..+.. .|++..+.+|++++||+||+||+|..+
T Consensus 256 ~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~-~~~~~~~~~ea~~~Al~AG~Dl~~~~~ 333 (779)
T PLN03080 256 EGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFE-YQTYTKSPEDAVADVLKAGMDINCGSY 333 (779)
T ss_pred hcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhh-cccccCCHHHHHHHHHHcCCCcccCch
Confidence 9988899999999999999999999986 99999999999999999999987 777777899999999999999999887
Q ss_pred hHHHHHHHHHcCCCcHHHHHhHHHHHHHHHHHhcCCCCCC---CccCCCCCCCCCHHHHHHHHHHHhhcceeeccCCCCC
Q 047862 326 YTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRLGYFDGSP---QYKSLGKNDICNPQHIELAGEAAAQGIVLLKNDNGTL 402 (769)
Q Consensus 326 ~~~~l~~av~~g~i~~~~id~av~RiL~~k~~~Glf~~~p---~~~~~~~~~v~~~~~~~la~eaA~eSiVLLKN~~~~L 402 (769)
+.+.|.+||++|+|++++||+||+|||++|+++|+|++.+ +|.+.....+.+++|+++|+|+|++|||||||++++|
T Consensus 334 ~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~L 413 (779)
T PLN03080 334 MLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFL 413 (779)
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCC
Confidence 7889999999999999999999999999999999999533 2333345678899999999999999999999999999
Q ss_pred CCCCCCCceEEEEccCcccccccccccccCCCccCCHHHHHhhcc-ceeEeeccccccCCCchhhHHHHHHccCCCEEEE
Q 047862 403 PFHNATIKTLAVVGPHANATKAMIGNYEGIPCRYISPMTGLSTYG-NVNYAFGCADIACKNDSMISQATDAAKNADATII 481 (769)
Q Consensus 403 PL~~~~~~kIaviG~~a~~~~~~~G~~~g~~~~~~t~~~gl~~~~-~~~~~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv 481 (769)
||++.+.+||+||||+|+....++|+|++.+++.+|++++|+++. .++|..||....|.+...+++|+++|++||+|||
T Consensus 414 PL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv 493 (779)
T PLN03080 414 PLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVV 493 (779)
T ss_pred CCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEE
Confidence 998765579999999999988788889988888999999999875 5788889865555556678999999999999999
Q ss_pred EEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEeCCceeeecccccCCCccEEEEccCCCchhHHHHHHH
Q 047862 482 VTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDISFAKNNPKIKSILWAGYPGEEGGRAIADI 561 (769)
Q Consensus 482 vvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~pG~~~g~AlAdV 561 (769)
++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.++++++|||++||||+++|+|||||
T Consensus 494 ~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdv 573 (779)
T PLN03080 494 VAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEI 573 (779)
T ss_pred EeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHH
Confidence 99999889999999999999999999999999877789999999999999999876678999999999999999999999
Q ss_pred HhcCCCCCccccceecccCcCCCCCccCCCCCCCCC--CCCCccccCCCCCcccCCCCCCCCCceecccccccccccccc
Q 047862 562 VFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDK--LPGRTYKFFDGPVVYPFGYGLSYTLFKYNLAFSNKSIDVKLD 639 (769)
Q Consensus 562 L~G~~nPsGkLPvT~~~~~~~~~~p~~~~~~~~~~~--y~g~~Yr~~~~~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~ 639 (769)
|||++|||||||+||||+++ .++|++++++++++. |+|++||||+.+|+||||||||||||+|++++++..++++..
T Consensus 574 LfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~ 652 (779)
T PLN03080 574 IFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRS 652 (779)
T ss_pred HcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccccccccc
Confidence 99999999999999989886 579998888765433 899999999999999999999999999999874322112110
Q ss_pred ccccccccccCCCCCCCCC--CCccccc-ccCCCceEEEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhcccccccc
Q 047862 640 KFQVCRDLNYTNGATKPQC--PAVQTAD-LKCNDNYFTFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRVY 715 (769)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv~ 715 (769)
...... .......+.+ ....... ..|+...++|+|+|||||+++|+||||||+++| ++..+|.|||+||+||+
T Consensus 653 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~ 729 (779)
T PLN03080 653 SVQDSI---SRKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVH 729 (779)
T ss_pred cccccc---ccccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEe
Confidence 000000 0000000000 0000000 123323699999999999999999999999999 77889999999999999
Q ss_pred cCCCCEEEEEEEeccCCCeeEEeCCCCEEEcCeeEEEEEecCCceeEEE
Q 047862 716 VAAGQSAKVNFTLNVCDSLRIIDFAANSILAAGAHTILLGDGAVSFPLQ 764 (769)
Q Consensus 716 L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~G~y~i~vG~ss~~~~~~ 764 (769)
|+||||++|+|+|+.+++|++||++++|++|+|+|+|+||.+++++.++
T Consensus 730 L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 730 TASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIE 778 (779)
T ss_pred eCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEe
Confidence 9999999999999975689999999999999999999999999766655
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=8.2e-141 Score=1255.08 Aligned_cols=681 Identities=28% Similarity=0.470 Sum_probs=554.0
Q ss_pred ccCCCCCcccCC---CCChHHHHHHHHhhcCHHHHHHhhcCcccCc-----------CCCCcchhHH--Hhhhccccccc
Q 047862 19 KLKLSDFAFCDA---KLPYPVRAKDLVDRMTLAEKVQQLGDLAYGV-----------PRLGLPLYEW--WSEALHGVSYI 82 (769)
Q Consensus 19 ~~~~~~~~~~d~---~~~~~~rv~~ll~~MTleEKv~ql~~~~~~i-----------~~lgi~~~~~--~~~~~~gv~~~ 82 (769)
++...++-|.+. +.+.++|+++||++||+|||+|||++....- ...++..+.- ..+.+..++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~ 95 (765)
T PRK15098 16 QPALADDLFGNHPLTPEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQ 95 (765)
T ss_pred chhhccCcccccCCCCcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHH
Confidence 344444444443 3478999999999999999999998742110 1111111100 00000000000
Q ss_pred cccCCCCCcccc---CCCCC-CcccCchhhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCccee-ecceecccCCCCCC
Q 047862 83 GRRTNTPPGTHF---DSEVP-GATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVVRDPRWG 157 (769)
Q Consensus 83 ~~~~~~~~g~~~---~~~~~-~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~G~~~-laP~vdl~r~p~~g 157 (769)
. ....+.|++. .+... ..|.||++++||||||++|++++|+++|+|+|++ |+|+ |+|++||.|||+||
T Consensus 96 ~-~~~~~~giP~li~~D~e~G~~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~g 168 (765)
T PRK15098 96 V-MQLSRLKIPLFFAYDVVHGQRTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRWG 168 (765)
T ss_pred H-hhCCCCCCCeeEEEeCCCCccccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCcc
Confidence 0 0011234331 11111 3689999999999999999999999999999999 8998 99999999999999
Q ss_pred ccCCCcCCCHHHHHHHHHHHHhhhccccCCCCccccCCCCCeeeEeecccccCccCCCCCCccccccccCCHHHHHHhcc
Q 047862 158 RVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIETFN 237 (769)
Q Consensus 158 R~~e~fgeDp~l~~~~a~a~v~GlQ~~~g~~~~~~~~~~~~~V~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l 237 (769)
|++|||||||+++++|+.|||+|||+++. ....+|++|+|||||||... .+|...++.+++++|+|+||
T Consensus 169 r~~rsfgeDP~lv~~~~~a~v~GlQ~~~~--------~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~~~~~~l~e~~l 237 (765)
T PRK15098 169 RASEGFGEDTYLTSIMGKTMVKAMQGKSP--------ADRYSVMTSVKHFALYGAVE---GGRDYNTVDMSPQRMFNDYL 237 (765)
T ss_pred ccccCcCCCHHHHHHHHHHHHHHHcCCCC--------CCCCCEEEECcEEeCCCCcc---cCccCccCcCCHHHHHHHHH
Confidence 99999999999999999999999998521 01234999999999998532 23444456789999999999
Q ss_pred HHHHHHHHcCCCceeeecccccCCccccCCHHHHHHHHHhhcCCCeEEEcCchhHHHhhhhcccccCCHHHHHHHHHHcC
Q 047862 238 LPFEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAG 317 (769)
Q Consensus 238 ~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG 317 (769)
+||+++|++| +++||||||.+||+|||+|+++|+++||+||||+|+|||||++|..+.. |++..+.+|++++||+||
T Consensus 238 ~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~--~~~~~~~~ea~~~Al~AG 314 (765)
T PRK15098 238 PPYKAGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK--HGVAADPEDAVRLALKSG 314 (765)
T ss_pred HHHHHHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh--cccCCCHHHHHHHHHHcC
Confidence 9999999887 5699999999999999999999999999999999999999999998864 666678899999999999
Q ss_pred CCCCCCcc-hHHHHHHHHHcCCCcHHHHHhHHHHHHHHHHHhcCCCCCCCccCCC-------CCCCCCHHHHHHHHHHHh
Q 047862 318 LDLDCGDY-YTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLG-------KNDICNPQHIELAGEAAA 389 (769)
Q Consensus 318 ~D~~~~~~-~~~~l~~av~~g~i~~~~id~av~RiL~~k~~~Glf~~~p~~~~~~-------~~~v~~~~~~~la~eaA~ 389 (769)
+||+|.+. +.+.|.++|++|+|++++||+||+|||++|+++|||+ + ||.+.. ...+.+++|+++|+++|+
T Consensus 315 ~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~-p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 392 (765)
T PRK15098 315 IDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-D-PYSHLGPKESDPVDTNAESRLHRKEAREVAR 392 (765)
T ss_pred CCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-C-CccccccccccccccccCCHHHHHHHHHHHH
Confidence 99999754 4467999999999999999999999999999999998 4 343221 122457899999999999
Q ss_pred hcceeeccCCCCCCCCCCCCceEEEEccCcccccccccccc--cCCCccCCHHHHHhhcc----ceeEeeccccccC---
Q 047862 390 QGIVLLKNDNGTLPFHNATIKTLAVVGPHANATKAMIGNYE--GIPCRYISPMTGLSTYG----NVNYAFGCADIAC--- 460 (769)
Q Consensus 390 eSiVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~--g~~~~~~t~~~gl~~~~----~~~~~~g~~~~~~--- 460 (769)
+|||||||++++|||++. +||+|+||+++....++|+|+ +.+.+.+|+++||+++. .+.|..||.....
T Consensus 393 ~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~ 470 (765)
T PRK15098 393 ESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGI 470 (765)
T ss_pred hcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCccc
Confidence 999999999999999853 599999999988765677764 56778899999999864 5788888742111
Q ss_pred ----------------CCchhhHHHHHHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 047862 461 ----------------KNDSMISQATDAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVL 524 (769)
Q Consensus 461 ----------------~~~~~~~~a~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl 524 (769)
.....+++|+++|++||++||++|.+...++|+.||.++.||+.|.+||+++++. ++|||||+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl 549 (765)
T PRK15098 471 IDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVL 549 (765)
T ss_pred chhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEE
Confidence 1134678899999999999999999888899999999999999999999999875 57899999
Q ss_pred eCCceeeecccccCCCccEEEEccCCCchhHHHHHHHHhcCCCCCccccceecccCcCCCCCccCCCCCCC---CC--CC
Q 047862 525 MCAGGVDISFAKNNPKIKSILWAGYPGEEGGRAIADIVFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSV---DK--LP 599 (769)
Q Consensus 525 ~~g~P~~l~~~~~~~~v~Ail~a~~pG~~~g~AlAdVL~G~~nPsGkLPvT~~~~~~~~~~p~~~~~~~~~---~~--y~ 599 (769)
++|+|++|+|+. ++++|||++|+||+++|+|+||||||++|||||||+|| |++. +|+|..+...... .+ +.
T Consensus 550 ~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~ 625 (765)
T PRK15098 550 MNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPN 625 (765)
T ss_pred eCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCccccCccc
Confidence 999999999874 48999999999999999999999999999999999998 5554 6788654221111 11 22
Q ss_pred CCccccCCC--CCcccCCCCCCCCCceeccccccccccccccccccccccccCCCCCCCCCCCcccccccCCCceEEEEE
Q 047862 600 GRTYKFFDG--PVVYPFGYGLSYTLFKYNLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQTADLKCNDNYFTFEI 677 (769)
Q Consensus 600 g~~Yr~~~~--~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 677 (769)
+.+||||+. +|+||||||||||+|+|++++.+. .. ... ++.++|+|
T Consensus 626 ~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~------~~--------~~~------------------~~~i~v~v 673 (765)
T PRK15098 626 KYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSS------PT--------MKR------------------DGKVTASV 673 (765)
T ss_pred ccccceeccCCCccccccCCCCCccEEeeccEecc------cc--------ccC------------------CCeEEEEE
Confidence 336899987 489999999999999999987321 00 000 25799999
Q ss_pred EEEecCCCCcceeEEEEEeCC-CCCCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcCeeEEEEEec
Q 047862 678 EVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDFAANSILAAGAHTILLGD 756 (769)
Q Consensus 678 ~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~G~y~i~vG~ 756 (769)
+|||||+++|+||||||+++| +++.+|.|||+||+||+|+|||+++|+|+|+. ++|++||++++|++|+|+|+|+||.
T Consensus 674 ~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ 752 (765)
T PRK15098 674 TVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGL 752 (765)
T ss_pred EEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEEC
Confidence 999999999999999999999 88999999999999999999999999999999 7999999999999999999999999
Q ss_pred CCceeE
Q 047862 757 GAVSFP 762 (769)
Q Consensus 757 ss~~~~ 762 (769)
||.+++
T Consensus 753 ss~d~~ 758 (765)
T PRK15098 753 DSARVK 758 (765)
T ss_pred CCCccc
Confidence 997664
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-64 Score=553.14 Aligned_cols=288 Identities=33% Similarity=0.593 Sum_probs=252.6
Q ss_pred CcccCchhhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCccee-ecceecccCCCCCCccCCC-cCCCHHHHHHHHHHH
Q 047862 100 GATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVVRDPRWGRVMET-PGEDPFVVGRYSVNY 177 (769)
Q Consensus 100 ~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~G~~~-laP~vdl~r~p~~gR~~e~-fgeDp~l~~~~a~a~ 177 (769)
++|.||+++++||+||++|++++|+++|+|+|++ |+|+ |+||+||.|||+|||++|+ |||||++++.|+.||
T Consensus 79 ~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~ 152 (397)
T COG1472 79 GFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAF 152 (397)
T ss_pred CCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999 8998 9999999999999998888 999999999999999
Q ss_pred HhhhccccCCCCccccCCCCCeeeEeecccccCccCCCCCCccccccccCCHHHHHHhccHHHHHHHHcCC--Cceeeec
Q 047862 178 VRGLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGD--ASSVMCS 255 (769)
Q Consensus 178 v~GlQ~~~g~~~~~~~~~~~~~V~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~--~~~vM~s 255 (769)
|+|||+. | |++|+|||||||..+ .+++..+..++++.|+|+|++||+.+++.+. +.++|++
T Consensus 153 i~Glq~~-g-------------v~at~KHFpGhG~~~---~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~ 215 (397)
T COG1472 153 IKGLQGA-G-------------VAATIKHFPGHGAVE---GDSHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVA 215 (397)
T ss_pred HHHHhhC-C-------------ceeeeccccCCCCCc---CCcccccCCCChHHHHHhhccchHHHHHhccccceEEeee
Confidence 9999997 6 999999999998432 1222222568999999999999999999995 6699999
Q ss_pred ccccCCccccCCHHHHHHHHHhhcCCCeEEEcCchhHHHhhhhcccccCCHHHHHHHHHHcCCCCCCCcc-hH-HHHHHH
Q 047862 256 YNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDY-YT-NFTVGA 333 (769)
Q Consensus 256 y~~vng~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~-~~-~~l~~a 333 (769)
||.+||.|||.|+++|++|||++|||+|+|||||++|+++.. . ..+..+++.++++||+||+|.+. .. ..+..+
T Consensus 216 y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~-~---~g~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~ 291 (397)
T COG1472 216 YPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAA-A---HGSAADRAEAALKAGVDIVLVCNELYEAYLVVL 291 (397)
T ss_pred ccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHH-h---ccCHHHHHHHHHhcCCCEEecCCchhHHHHHHH
Confidence 999999999999999999999999999999999999998776 2 35677888889999999998532 32 333444
Q ss_pred HHcCCCcHHHHHhHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCHHHHHHHHHHHhhcceeeccCCCCCCCCCCCCceEE
Q 047862 334 VQQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKNDNGTLPFHNATIKTLA 413 (769)
Q Consensus 334 v~~g~i~~~~id~av~RiL~~k~~~Glf~~~p~~~~~~~~~v~~~~~~~la~eaA~eSiVLLKN~~~~LPL~~~~~~kIa 413 (769)
...+ +++++||++++|||++|+++|+|+ +| |.. +|++++++++++|+|||||+..+|||+ ++.++|+
T Consensus 292 ~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~-~~~---------~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~ 358 (397)
T COG1472 292 ELVG-LSEARLDDAVRRILRVKFKLGLFE-NP-YSS---------EHRALAREAARESIVLLKNDGGLLPLK-KSAKRIA 358 (397)
T ss_pred HhcC-CcHHHHHHHHHHHHHHHHHhcccc-CC-Cch---------hhHHHHHHHHHHHHHHHHhccCCCccc-cccCceE
Confidence 4445 999999999999999999999999 43 432 899999999999999999998999999 4456999
Q ss_pred EEccCcccccccccccc
Q 047862 414 VVGPHANATKAMIGNYE 430 (769)
Q Consensus 414 viG~~a~~~~~~~G~~~ 430 (769)
|+||+++.. . |+|+
T Consensus 359 v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 359 VIGPYADDG-D--GGWS 372 (397)
T ss_pred EEccccccC-C--CCee
Confidence 999999987 4 5555
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=7.1e-60 Score=507.67 Aligned_cols=225 Identities=30% Similarity=0.539 Sum_probs=188.7
Q ss_pred cccCchhhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCccee-ecceecccCCCCCCccCCCcCCCHHHHHHHHHHHHh
Q 047862 101 ATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVVRDPRWGRVMETPGEDPFVVGRYSVNYVR 179 (769)
Q Consensus 101 ~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~G~~~-laP~vdl~r~p~~gR~~e~fgeDp~l~~~~a~a~v~ 179 (769)
.|.||+++++|||||+++++++|..+|+|++++ |+|+ |||++||.|+|+|||+.|+|||||+++++|+.|||+
T Consensus 69 ~t~~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~ 142 (299)
T PF00933_consen 69 FTAFPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVR 142 (299)
T ss_dssp S---S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHH
T ss_pred CccCcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhc
Confidence 599999999999999999999999999999999 9998 999999999999999999999999999999999999
Q ss_pred hhccccCCCCccccCCCCCeeeEeecccccC-ccCCCCCCccccccccCCHHHHHHhccHHHHHHHHcCCCceeeecccc
Q 047862 180 GLQDVEGQENTADLSTRPLKVSACCKHYAAY-DLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNR 258 (769)
Q Consensus 180 GlQ~~~g~~~~~~~~~~~~~V~a~~KHFpg~-~~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~ 258 (769)
|+|+. | |++|+|||||| ..++|.+.+ ...+++++|+|.||+||+.+|+++.+.+||+||+.
T Consensus 143 G~q~~-g-------------v~~~~KHFpG~~~~d~~~~~~----~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~ 204 (299)
T PF00933_consen 143 GLQGA-G-------------VAATAKHFPGHGAQDSHRDLP----SVDVSERELREIDLPPFRAAIKDAGADAVMTSYPA 204 (299)
T ss_dssp HHHCT-T-------------SEEEEEEETTGGCSCTTTTTE----EEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STC
T ss_pred ccccc-c-------------ccccccccccccccccccccc----eecCCcccccchhcccchhcccccccceeeeeccc
Confidence 99998 6 99999999997 355554433 45679999999999999999944556699999999
Q ss_pred cCCccccCCHHHHHHHHHhhcCCCeEEEcCchhHHHhhhhcccccCCHHHHHHHHHHcCCCCCCCcch----HHHHHHHH
Q 047862 259 VNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDYY----TNFTVGAV 334 (769)
Q Consensus 259 vng~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~----~~~l~~av 334 (769)
+|++|||+|+++|+++||++|||+|+|||||++|+++.. .....+++++||+||+||+|.+.. .+.|.++|
T Consensus 205 id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~-----~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av 279 (299)
T PF00933_consen 205 IDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSS-----NYSIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAV 279 (299)
T ss_dssp CTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHC-----CTTHHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHH
T ss_pred cCCccchhhhccchhhCcCcccCCCeEecccchHHHHHh-----ccccchHHHHHHhCccCeeCCCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 345889999999999999987432 48899999
Q ss_pred HcCCCcHHHHHhHHHHHHHH
Q 047862 335 QQGKVRETDIDRSLRFLYVV 354 (769)
Q Consensus 335 ~~g~i~~~~id~av~RiL~~ 354 (769)
++|.++++|||+||+|||++
T Consensus 280 ~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 280 ESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HTTSSGHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=5.3e-47 Score=410.59 Aligned_cols=220 Identities=20% Similarity=0.216 Sum_probs=189.7
Q ss_pred CcccCchhhHhhhcCC------HHHHHHHHHHHHHHHHHhhccCCCccee-ecceecccCCCCCCccCCCcCCCHHHHHH
Q 047862 100 GATSFPTVILTTASFN------ESLWKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVVRDPRWGRVMETPGEDPFVVGR 172 (769)
Q Consensus 100 ~~t~fP~~~~laAt~d------~~l~~~~g~~~~~E~ra~~~~g~~G~~~-laP~vdl~r~p~~gR~~e~fgeDp~l~~~ 172 (769)
+.|.||+++++||||| ++|++++|+++|+|+|++ |+|+ |+||+||.+++.| |+.|+|||||+++++
T Consensus 74 ~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~ 146 (337)
T PRK05337 74 GFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAA 146 (337)
T ss_pred CCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCccccCccCCCCCCCe-eeccCCCCCHHHHHH
Confidence 5789999999999999 999999999999999999 8998 9999999865444 678999999999999
Q ss_pred HHHHHHhhhccccCCCCccccCCCCCeeeEeecccccCccC---CCCCCccccccccCCHHHHHHhccHHHHHHHHcCCC
Q 047862 173 YSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAYDLD---NWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDA 249 (769)
Q Consensus 173 ~a~a~v~GlQ~~~g~~~~~~~~~~~~~V~a~~KHFpg~~~~---~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~ 249 (769)
|+.||++|+|+. | |++|+|||||||.. +|...+. ...+.++|++.||+||+.+|++| +
T Consensus 147 ~a~a~i~Glq~~-g-------------v~~~~KHFpG~G~~~~dsh~~~~~----~~~~~~el~~~~l~PF~~ai~~g-~ 207 (337)
T PRK05337 147 LASAFIDGMHAA-G-------------MAATGKHFPGHGAVEADSHVETPV----DERPLEEIRAEDMAPFRALIAAG-L 207 (337)
T ss_pred HHHHHHHHHHHC-C-------------CEEEecccCCCCCCcCCCCCCCCC----CCCCHHHHHhhhHHHHHHHHhcC-C
Confidence 999999999997 6 99999999999854 3333221 22466799999999999999988 5
Q ss_pred ceeeec---ccccCCccccCCHHHHHHHHHhhcCCCeEEEcCchhHHHhhhhcccccCCHHHHHHHHHHcCCCCCCCcc-
Q 047862 250 SSVMCS---YNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDY- 325 (769)
Q Consensus 250 ~~vM~s---y~~vng~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~- 325 (769)
.+|||| |+.+|++|||+|+++|++|||+||||+|+|||||++|.++.. ..+.++++++||+||+||+|.+.
T Consensus 208 ~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~-----~~~~~~~~~~al~AG~Dl~l~~~~ 282 (337)
T PRK05337 208 DAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV-----AGDYAERAQAALDAGCDMVLVCNN 282 (337)
T ss_pred CEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh-----cCCHHHHHHHHHHcCCCEEeeCCC
Confidence 699999 899999999999999999999999999999999999987643 46788999999999999987532
Q ss_pred --hHHHHHHHHHcCCCcHHHHHhHHHHHHHHHHHh
Q 047862 326 --YTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRL 358 (769)
Q Consensus 326 --~~~~l~~av~~g~i~~~~id~av~RiL~~k~~~ 358 (769)
....+.+++.. +.+.+|+++++.+.
T Consensus 283 ~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 283 RDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred HHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 33556666644 77889999888663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=2.4e-38 Score=327.99 Aligned_cols=215 Identities=41% Similarity=0.596 Sum_probs=152.7
Q ss_pred ceeeccCCCCCCCCCCCCceEEEEccCcccccccccccc-cCCCccCCHHHHHhhccc---eeEeeccccccCCCchhhH
Q 047862 392 IVLLKNDNGTLPFHNATIKTLAVVGPHANATKAMIGNYE-GIPCRYISPMTGLSTYGN---VNYAFGCADIACKNDSMIS 467 (769)
Q Consensus 392 iVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~-g~~~~~~t~~~gl~~~~~---~~~~~g~~~~~~~~~~~~~ 467 (769)
||||||++++|||++++. ||+|+|+.+.....++|++. ..+.+..+++++|+++.. +.+..++. .......++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999998643 99999999998665555553 346667899999998862 22222111 112356788
Q ss_pred HHHHHccCCCEEEEEEcCCCCccccc--------CCCCCCCCChhHHHHHHHHHHhcCCCEEEEEeCCceeeecccccCC
Q 047862 468 QATDAAKNADATIIVTGLDLSIEAEA--------LDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDISFAKNNP 539 (769)
Q Consensus 468 ~a~~~a~~aD~vIvvvG~~~~~e~Eg--------~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~~~~~~~ 539 (769)
++++.++++|++||++|. .++|+ .||.++.||..|.+||+++++.+ +|+|||+++|+|+++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 899999999999999992 23343 58999999999999999999865 6789999999999997664 4
Q ss_pred CccEEEEccCCCchhHHHHHHHHhcCCCCCccccceecccCcCCCCCccCCCCCCCCCCCCCccccCCCCCcccCCCCCC
Q 047862 540 KIKSILWAGYPGEEGGRAIADIVFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRTYKFFDGPVVYPFGYGLS 619 (769)
Q Consensus 540 ~v~Ail~a~~pG~~~g~AlAdVL~G~~nPsGkLPvT~~~~~~~~~~p~~~~~~~~~~~y~g~~Yr~~~~~~~ypFG~GLS 619 (769)
+++|||++|++|+++++|+||||||++|||||||+|| |++. +++|..+... ..+++|+|....++||||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLs 224 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLS 224 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS------THCCHHHHTTSESB-TT--B-
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-----ccCcccccCCCCccCcCCCCCE
Confidence 8999999999999999999999999999999999998 4443 5677642211 1234577777889999999999
Q ss_pred CCC
Q 047862 620 YTL 622 (769)
Q Consensus 620 YTt 622 (769)
||+
T Consensus 225 yt~ 227 (227)
T PF01915_consen 225 YTY 227 (227)
T ss_dssp TT-
T ss_pred eeC
Confidence 996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.82 E-value=1.1e-20 Score=159.24 Aligned_cols=69 Identities=38% Similarity=0.608 Sum_probs=60.0
Q ss_pred eeEEEEEeCC-CCCCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeCC-CCEEEcCeeEEEEEecCC
Q 047862 689 EVVMVYSKLP-GIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDFA-ANSILAAGAHTILLGDGA 758 (769)
Q Consensus 689 evvQlYv~~p-~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~~-~~~~~~~G~y~i~vG~ss 758 (769)
||||||+++| ++..+|.|+|+||+||+|+|||+++|+|+|+. ++|++||++ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999 88999999999999999999999999999999 799999998 799999999999999997
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.62 E-value=0.0069 Score=53.77 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=45.6
Q ss_pred ceEEEEEEEEecCCC-CcceeEEEEEeCCCCCCCcchhccccccc-ccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcCe
Q 047862 671 NYFTFEIEVQNVGKV-DGSEVVMVYSKLPGIAGTPIKQLIGFQRV-YVAAGQSAKVNFTLNVCDSLRIIDFAANSILAAG 748 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~-~G~evvQlYv~~p~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~G 748 (769)
+.++++++|+|+|.. ++.-.|++|+... +.+-..| .|+|||+++++|++.. . .+|
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~~~---------~~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G 75 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLDGN---------SVSTVTIPSLAPGESETVTFTWTP-P-------------SPG 75 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEETTE---------EEEEEEESEB-TTEEEEEEEEEE--S-------------S-C
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEECCc---------eeccEEECCcCCCcEEEEEEEEEe-C-------------CCC
Confidence 689999999999998 5667888888764 2255556 6999999999999997 3 467
Q ss_pred eEEEEEe
Q 047862 749 AHTILLG 755 (769)
Q Consensus 749 ~y~i~vG 755 (769)
.|.|.+=
T Consensus 76 ~~~i~~~ 82 (101)
T PF07705_consen 76 SYTIRVV 82 (101)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 7777663
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.13 E-value=0.057 Score=46.12 Aligned_cols=67 Identities=27% Similarity=0.382 Sum_probs=38.0
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC-CCC--CCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcC
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP-GIA--GTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDFAANSILAA 747 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p-~~~--~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~ 747 (769)
+.++++++|+|.|..+-. -+-|=+..| +-. ..|. ++. .|+|||+++++|.|....+ .++
T Consensus 5 ~~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~-~~~-----~l~pG~s~~~~~~V~vp~~-----------a~~ 66 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA-SVP-----SLPPGESVTVTFTVTVPAD-----------AAP 66 (78)
T ss_dssp EEEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE-EE-------B-TTSEEEEEEEEEE-TT-------------S
T ss_pred CEEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc-ccc-----cCCCCCEEEEEEEEECCCC-----------CCC
Confidence 579999999999976533 244445556 432 2232 111 7999999999999988431 257
Q ss_pred eeEEEEEe
Q 047862 748 GAHTILLG 755 (769)
Q Consensus 748 G~y~i~vG 755 (769)
|+|.|.+-
T Consensus 67 G~y~v~~~ 74 (78)
T PF10633_consen 67 GTYTVTVT 74 (78)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 99988763
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=93.87 E-value=0.32 Score=42.12 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=35.7
Q ss_pred EEEEEEEEecCCCC------cceeEEEEEeCC-CC------CCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeC
Q 047862 673 FTFEIEVQNVGKVD------GSEVVMVYSKLP-GI------AGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDF 739 (769)
Q Consensus 673 ~~v~v~V~NtG~~~------G~evvQlYv~~p-~~------~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~ 739 (769)
+.+.++|+|+++.+ ..--.-+.|.++ +. -++.- ...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 56888889988732 222334555555 32 22332 33556778999999999999998 5454
Q ss_pred CCCEEEcCeeEEEE
Q 047862 740 AANSILAAGAHTIL 753 (769)
Q Consensus 740 ~~~~~~~~G~y~i~ 753 (769)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999885
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=90.69 E-value=5.4 Score=45.25 Aligned_cols=226 Identities=19% Similarity=0.153 Sum_probs=113.2
Q ss_pred HHHcCCCceeeecccccCC-----ccccCCHHHHHHHHHhhcCCCeEEEcCchhHHHhhhhcccccCCHHHHHHHHHHcC
Q 047862 243 CVREGDASSVMCSYNRVNG-----IPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAG 317 (769)
Q Consensus 243 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG 317 (769)
.|+++.+ .+|.+-+++.| ..||.++-+++.+|+-=+.. |.-+..-+ |=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepG-----------------EFs~RAFLNg 120 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPG-----------------EFSKRAFLNG 120 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCC-----------------cchHHHHhcC
Confidence 4556655 88999899887 57889999888888754432 22222221 2223344333
Q ss_pred -CCCCCC--------cchHHHHHHHHH--cCCCcHHHHHhHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCHHHHHHHHH
Q 047862 318 -LDLDCG--------DYYTNFTVGAVQ--QGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLGKNDICNPQHIELAGE 386 (769)
Q Consensus 318 -~D~~~~--------~~~~~~l~~av~--~g~i~~~~id~av~RiL~~k~~~Glf~~~p~~~~~~~~~v~~~~~~~la~e 386 (769)
+|+.-- .........|++ +|.++ .+|++-.++++.+....-- +-.|++. ++.......+..+
T Consensus 121 K~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~vEa---~IDfpee---di~~~~~~~i~~~ 193 (454)
T COG0486 121 KLDLTQAEAIADLIDAKTEQAARIALRQLQGALS-QLINELREALLELLAQVEA---NIDFPEE---DIEELVLEKIREK 193 (454)
T ss_pred CccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHheE---eCCCCcc---cccchhHHHHHHH
Confidence 555311 111123344444 47764 5778888888887765421 1123321 2222121111111
Q ss_pred H--Hhhcc-eeeccCCCCCCCCCCCCceEEEEcc-CcccccccccccccCCCccCCHHHHHhhcc--ceeEeecccc---
Q 047862 387 A--AAQGI-VLLKNDNGTLPFHNATIKTLAVVGP-HANATKAMIGNYEGIPCRYISPMTGLSTYG--NVNYAFGCAD--- 457 (769)
Q Consensus 387 a--A~eSi-VLLKN~~~~LPL~~~~~~kIaviG~-~a~~~~~~~G~~~g~~~~~~t~~~gl~~~~--~~~~~~g~~~--- 457 (769)
+ ..+-+ -+|..-..--.|.. +-||+++|+ |+.. .|++-+|-.+- .|+-.+|.+.
T Consensus 194 l~~~~~~l~~ll~~~~~g~ilr~--G~kvvIiG~PNvGK---------------SSLLNaL~~~d~AIVTdI~GTTRDvi 256 (454)
T COG0486 194 LEELIAELDELLATAKQGKILRE--GLKVVIIGRPNVGK---------------SSLLNALLGRDRAIVTDIAGTTRDVI 256 (454)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhc--CceEEEECCCCCcH---------------HHHHHHHhcCCceEecCCCCCccceE
Confidence 1 11112 22322222333433 458999994 4322 13444443321 1222222211
Q ss_pred ------------------ccC----CCchhhHHHHHHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHh
Q 047862 458 ------------------IAC----KNDSMISQATDAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADA 515 (769)
Q Consensus 458 ------------------~~~----~~~~~~~~a~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~ 515 (769)
... ....+++++.+.+++||.|++++-... .++....++++.+ .
T Consensus 257 ee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~------------~~~~~d~~~~~~~--~ 322 (454)
T COG0486 257 EEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQ------------PLDKEDLALIELL--P 322 (454)
T ss_pred EEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC------------CCchhhHHHHHhc--c
Confidence 000 123467788999999999999984321 1344555666622 2
Q ss_pred cCCCEEEEEe
Q 047862 516 AKGPVILVLM 525 (769)
Q Consensus 516 ~~~pvVvVl~ 525 (769)
.++|+++|++
T Consensus 323 ~~~~~i~v~N 332 (454)
T COG0486 323 KKKPIIVVLN 332 (454)
T ss_pred cCCCEEEEEe
Confidence 4578888876
No 12
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.30 E-value=2.2 Score=38.10 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=45.8
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCCCCCCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcCeeE
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLPGIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDFAANSILAAGAH 750 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~G~y 750 (769)
...+.+++++|+|....+--+ +.|....... -.-+..-.|+||++.++++++...+....++..-.-..+.|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v----~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRV----RQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEE----EeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeEE
Confidence 578899999999999865333 3332111111 1133455699999999999999425566554333223444444
Q ss_pred EE
Q 047862 751 TI 752 (769)
Q Consensus 751 ~i 752 (769)
.|
T Consensus 94 ~i 95 (102)
T PF14874_consen 94 EI 95 (102)
T ss_pred EE
Confidence 44
No 13
>PRK13202 ureB urease subunit beta; Reviewed
Probab=84.94 E-value=1.6 Score=39.02 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 673 FTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 673 ~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
-+++++|+|||+++ +|+=-+.. -. +.-....=.|+ .-|..+|||+++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 46899999999986 66644443 11 11111111222 2466799999999984
No 14
>PRK13203 ureB urease subunit beta; Reviewed
Probab=84.63 E-value=1.7 Score=38.81 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=32.0
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+++ +|+=-+.. -. +.--...=.|+ .-|..+|||+|+|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 19 RETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CCEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999986 67654443 11 11111111222 2466799999999984
No 15
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=83.37 E-value=2.9 Score=37.64 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=27.6
Q ss_pred EEEEEEEecCCCCcceeEEEEEeCCCCCCCcchhcccc-cccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcCeeEEE
Q 047862 674 TFEIEVQNVGKVDGSEVVMVYSKLPGIAGTPIKQLIGF-QRVYVAAGQSAKVNFTLNVCDSLRIIDFAANSILAAGAHTI 752 (769)
Q Consensus 674 ~v~v~V~NtG~~~G~evvQlYv~~p~~~~~P~k~L~gF-~kv~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~G~y~i 752 (769)
.|+++++|.|... .+++ ..++ ....|.||++++++|+-.. +|+|.+
T Consensus 44 ~v~l~~~N~~~~~-h~~~----------------i~~~~~~~~l~~g~~~~~~f~~~~----------------~G~y~~ 90 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEFV----------------IPDLGISKVLPPGETATVTFTPLK----------------PGEYEF 90 (104)
T ss_dssp EEEEEEEE-SSS--EEEE----------------EGGGTEEEEE-TT-EEEEEEEE-S-----------------EEEEE
T ss_pred eEEEEEEECCCCc-EEEE----------------ECCCceEEEECCCCEEEEEEcCCC----------------CEEEEE
Confidence 3667789999886 3333 1112 2357999999999986443 577777
Q ss_pred EEe
Q 047862 753 LLG 755 (769)
Q Consensus 753 ~vG 755 (769)
+-+
T Consensus 91 ~C~ 93 (104)
T PF13473_consen 91 YCT 93 (104)
T ss_dssp B-S
T ss_pred EcC
Confidence 655
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=82.48 E-value=2.4 Score=37.81 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=32.3
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+++ +|+=-+.. -. +.-....=.|| .-|..+|||+++|++.
T Consensus 19 r~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 19 REAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CCEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 346899999999986 66644433 11 12222222222 2467799999999984
No 17
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=81.64 E-value=2.6 Score=37.52 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=31.9
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.=+++++|+|||+++ +|+=-+.. -. +.--...=.|+ .-|..+||++++|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 19 RKTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CcEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999986 67644433 11 11111122222 3467799999999984
No 18
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=80.19 E-value=3.2 Score=36.95 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=28.3
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
+.-+++++|+|||+++ +|+=-+.. -. +.-....=.|+ .-|..+||++++|++.
T Consensus 17 gr~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 4567899999999986 67644433 11 11111111222 2466799999999984
No 19
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.05 E-value=6.8 Score=44.21 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=47.9
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEe-CC-CC-CCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcC
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSK-LP-GI-AGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDFAANSILAA 747 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~-~p-~~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~ 747 (769)
.+..++|++.|-|+-+=+.. |=++ .| +- ...-.-+ -.-.||.|.|||+++|++++.++. -.+|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~--Le~~g~pe~w~~~Fteg~-~~vt~vkL~~gE~kdvtleV~ps~-----------na~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYA--LELSGLPEGWTAEFTEGE-LRVTSVKLKPGEEKDVTLEVYPSL-----------NATP 349 (513)
T ss_pred CceEEEEEEccCCCCCceeE--EEeccCCCCcceEEeeCc-eEEEEEEecCCCceEEEEEEecCC-----------CCCC
Confidence 56789999999997543322 3333 34 21 1101111 123577899999999999999843 2378
Q ss_pred eeEEEEEecCC
Q 047862 748 GAHTILLGDGA 758 (769)
Q Consensus 748 G~y~i~vG~ss 758 (769)
|+|.+.|-.+|
T Consensus 350 G~Ynv~I~A~s 360 (513)
T COG1470 350 GTYNVTITASS 360 (513)
T ss_pred CceeEEEEEec
Confidence 99998887665
No 20
>PRK13201 ureB urease subunit beta; Reviewed
Probab=77.23 E-value=4.2 Score=38.02 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=32.2
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+|+ |||=-+.. -. +.--...=.|| .-|..+||++++|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999986 67644433 11 11111112222 2467899999999984
No 21
>PRK13205 ureB urease subunit beta; Reviewed
Probab=76.07 E-value=4.4 Score=38.67 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=32.7
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+++ |||=-+.. -. +.-....=.|| .-|..+||++++|++.
T Consensus 19 R~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 19 REAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred CcEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999986 67644443 11 11122222222 3467899999999985
No 22
>PRK13204 ureB urease subunit beta; Reviewed
Probab=75.84 E-value=4.5 Score=38.70 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=32.2
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+|+ |||=-+.. -. +..-...=.|+ .-|..+||++++|++.
T Consensus 42 r~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 42 RPRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred CcEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 346899999999986 67644433 11 11122222222 2467899999999985
No 23
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=75.31 E-value=10 Score=35.39 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=38.8
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC-C-----------------CCCCcchhcccccc-cccCCCCEEEEEEEeccC
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP-G-----------------IAGTPIKQLIGFQR-VYVAAGQSAKVNFTLNVC 731 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p-~-----------------~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~~ 731 (769)
+..+++++|+|+++-.- .+++++..- + +...+..+|....+ |.|+|+|+++|+|+|..-
T Consensus 27 q~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcC
Confidence 56788999999887544 344444432 1 11234445555544 679999999999999873
No 24
>PRK13198 ureB urease subunit beta; Reviewed
Probab=74.38 E-value=5.2 Score=38.26 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=32.3
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+++ |||=-+.. -. +.--...=.|+ .-|..+||++++|++.
T Consensus 47 r~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 47 KPVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred CcEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 346899999999986 67644433 11 11112222222 3467899999999985
No 25
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=72.24 E-value=18 Score=31.51 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=33.5
Q ss_pred EEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEe
Q 047862 674 TFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIID 738 (769)
Q Consensus 674 ~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d 738 (769)
.+.++++|.|+ ..+.+-|.+. -....| .++.|+||++.++.+.+.. .-.+||
T Consensus 21 ~l~l~l~N~g~----~~~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~--s~gwYD 73 (89)
T PF05506_consen 21 NLRLTLSNPGS----AAVTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA--SGGWYD 73 (89)
T ss_pred EEEEEEEeCCC----CcEEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC--CCCcEE
Confidence 68889999854 4444444442 111222 5678999999999999954 244444
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=70.94 E-value=6.1 Score=35.10 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=30.2
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-----CCCCCcchhccc-------ccccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-----GIAGTPIKQLIG-------FQRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-----~~~~~P~k~L~g-------F~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+++ +|+=-++- ..+.--...-.| =.-|+.+||+.|+|++-
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 456788899999986 55532221 111111111112 13467899999999984
No 27
>COG1470 Predicted membrane protein [Function unknown]
Probab=70.70 E-value=15 Score=41.61 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=46.4
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhccccccc-ccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcCe
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRV-YVAAGQSAKVNFTLNVCDSLRIIDFAANSILAAG 748 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~G 748 (769)
...++.+.|.|+|+.+=+.+- |=|..| +- ..+.-.+ ++ .|+|||+++|.++|+...+ ..+|
T Consensus 397 ee~~i~i~I~NsGna~LtdIk-l~v~~PqgW----ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~-----------a~aG 459 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIK-LTVNGPQGW----EIEVDES-TIPSLEPGESKTVSLTITVPED-----------AGAG 459 (513)
T ss_pred ccceEEEEEEecCCCccceee-EEecCCccc----eEEECcc-cccccCCCCcceEEEEEEcCCC-----------CCCC
Confidence 457889999999977766553 566666 31 1233444 55 5899999999999987431 1456
Q ss_pred eEEEEEecC
Q 047862 749 AHTILLGDG 757 (769)
Q Consensus 749 ~y~i~vG~s 757 (769)
+|.|.+-..
T Consensus 460 dY~i~i~~k 468 (513)
T COG1470 460 DYRITITAK 468 (513)
T ss_pred cEEEEEEEe
Confidence 666665543
No 28
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=69.63 E-value=11 Score=34.70 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=38.6
Q ss_pred EEEEEEEecCCCCcceeEEEEEeCC-C-CCCCcchhcccccccc-cCCCCEEEEEEEecc
Q 047862 674 TFEIEVQNVGKVDGSEVVMVYSKLP-G-IAGTPIKQLIGFQRVY-VAAGQSAKVNFTLNV 730 (769)
Q Consensus 674 ~v~v~V~NtG~~~G~evvQlYv~~p-~-~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~ 730 (769)
+.+++|+|+|+ -.-.+|+.+..- . ....+...|.=+=..+ |+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57999999999 667888888862 1 1123333455555554 89999999999 554
No 29
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=69.50 E-value=15 Score=34.39 Aligned_cols=53 Identities=21% Similarity=0.447 Sum_probs=32.2
Q ss_pred EEEEEEEecCCCC----cceeEEEEEeCCCC---C-------------CCc-chhcccccccccCCCCEEEEEEEecc
Q 047862 674 TFEIEVQNVGKVD----GSEVVMVYSKLPGI---A-------------GTP-IKQLIGFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 674 ~v~v~V~NtG~~~----G~evvQlYv~~p~~---~-------------~~P-~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (769)
.|+|+.+|+|+.+ |.-.|- ..++. + ..+ ..+..+..|+ |.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl-iggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKV-IGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEccc-cCCCceEEEEEECCC
Confidence 5888899999877 776662 33311 0 011 1122222222 699999999999863
No 30
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=67.63 E-value=7.8 Score=38.97 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=32.0
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.-+++++|+|||+++ +|+=-+.. -. +....+.=.|| .-|..+||++++|++.
T Consensus 128 r~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 128 RPAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CCEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 346899999999986 66644443 11 11122222222 2466799999999984
No 31
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=65.66 E-value=10 Score=34.50 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=32.5
Q ss_pred ceEEEEEEEEecCCCCcceeEEEE-E----eCC--CC-CCC---cc--hhcccccccccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVY-S----KLP--GI-AGT---PI--KQLIGFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlY-v----~~p--~~-~~~---P~--k~L~gF~kv~L~pGes~~V~~~l~~ 730 (769)
...+.+++++|.|+.+=..-+... + ... +. ... +. .....=.++.|+||++++|+++|+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 358899999999997665444444 1 111 11 111 11 1222234567999999999999998
No 32
>PRK13986 urease subunit alpha; Provisional
Probab=64.08 E-value=10 Score=38.68 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=31.8
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
.=+++++|+|||+++ +|+=-+.. -. +..-...=.|| .-|..+||++++|++.
T Consensus 124 r~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 124 KKAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred CcEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 346899999999986 66644433 11 11111111222 3467899999999984
No 33
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=60.85 E-value=7.6 Score=39.78 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=35.4
Q ss_pred EEEecCCCCcceeEEEEEeCC-CCC--CCc--------chhcccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEc
Q 047862 678 EVQNVGKVDGSEVVMVYSKLP-GIA--GTP--------IKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDFAANSILA 746 (769)
Q Consensus 678 ~V~NtG~~~G~evvQlYv~~p-~~~--~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~ 746 (769)
++-|-|. |.-+++||.+.+ +.. ..| .+.+....++.|.||||- +|.+.---++| .+
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi----TL~Pg~yH~Fw-------~e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI----TLPPGIYHWFW-------GE 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE----EE-TTEEEEEE-------E-
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE----eeCCCCeeeEE-------ec
Confidence 5677775 788899999887 432 222 346788999999999984 45563223344 34
Q ss_pred CeeEEEEEecCC
Q 047862 747 AGAHTILLGDGA 758 (769)
Q Consensus 747 ~G~y~i~vG~ss 758 (769)
+|. ++||--|
T Consensus 178 ~g~--vLigEVS 187 (225)
T PF07385_consen 178 GGD--VLIGEVS 187 (225)
T ss_dssp TTS--EEEEEEE
T ss_pred CCC--EEEEeee
Confidence 555 6666544
No 34
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=59.86 E-value=21 Score=32.19 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=35.8
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC--CCCCCcc-hhcccccccccCCCCEEEEEEEeccC
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP--GIAGTPI-KQLIGFQRVYVAAGQSAKVNFTLNVC 731 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p--~~~~~P~-k~L~gF~kv~L~pGes~~V~~~l~~~ 731 (769)
..++|+++++|..+..-+.| ++.+..- ...+.+. .-.+-...+.|+|||++++++.+.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v-~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNV-SLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECE-EEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCccccc-eeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 67999999999999884442 2333221 1112221 22344556679999999999999873
No 35
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=58.93 E-value=23 Score=39.08 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=29.9
Q ss_pred ceEEEEEEEEecCCCCcceeEEEE------EeCC----C--CCCCcchhccccc------ccccCCCCEEEEEEEec
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVY------SKLP----G--IAGTPIKQLIGFQ------RVYVAAGQSAKVNFTLN 729 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlY------v~~p----~--~~~~P~k~L~gF~------kv~L~pGes~~V~~~l~ 729 (769)
.+++++++|||+|+-+ |+|= |++. . ....|. +|.+-+ .--|+|||+++++++..
T Consensus 263 R~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred cEEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 5799999999998643 3331 2222 1 122344 555542 22489999999999984
No 36
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=58.91 E-value=26 Score=33.75 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=41.6
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCCCCCCCcchhcccccccc-cCCCCEEEEEEEeccC
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLPGIAGTPIKQLIGFQRVY-VAAGQSAKVNFTLNVC 731 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~~ 731 (769)
.-+.|.++.+|+++. ++--+-+..+ .-..-.++++|.++. |+||++.++.+-|+-+
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k--~l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF~ 141 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEK--KLPAGMRIHEFPEIESLEPGASVTVSLGIDFN 141 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCC--CCCCCcEeeccCcccccCCCCeEEEEEEEecc
Confidence 458899999999985 4444445443 112334799999996 9999999999999873
No 37
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=56.78 E-value=27 Score=33.60 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred ceEEEEEEEEecCCCCccee-E--EEEEeC-C--CCCCCcchhccccccc------ccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDGSEV-V--MVYSKL-P--GIAGTPIKQLIGFQRV------YVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~ev-v--QlYv~~-p--~~~~~P~k~L~gF~kv------~L~pGes~~V~~~l~~ 730 (769)
+.+.|..+|||+|+.+=+++ + .++=.. . .....=..++.+|.+. .|+|||++.-++.++.
T Consensus 62 ~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 62 ESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred cEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 67999999999999866543 2 222211 2 1122233445556322 2999999999999874
No 38
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=48.46 E-value=36 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=25.9
Q ss_pred HHHHHHcCCCcHHHHHhHHHHHHHHHHHhc
Q 047862 330 TVGAVQQGKVRETDIDRSLRFLYVVLMRLG 359 (769)
Q Consensus 330 l~~av~~g~i~~~~id~av~RiL~~k~~~G 359 (769)
.+..++...-+.+.||..|..+|.+|..+|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 455566778889999999999999999988
No 39
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=48.13 E-value=46 Score=31.16 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=39.5
Q ss_pred eEEEEEEEEecCCC----CcceeEEEEEeCC-CC-CC-CcchhcccccccccCCCCEEEEEEEecc
Q 047862 672 YFTFEIEVQNVGKV----DGSEVVMVYSKLP-GI-AG-TPIKQLIGFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 672 ~~~v~v~V~NtG~~----~G~evvQlYv~~p-~~-~~-~P~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (769)
.-.+.++++|+|+. .|-=-|++. .. +. +. ...++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 34789999999995 666666666 33 22 22 2222333566788999999999998876
No 40
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=47.42 E-value=1.1e+02 Score=26.22 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=45.4
Q ss_pred eEEEEEEEEe-cCCCCcceeEEEEEeCCCCCCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEcCeeE
Q 047862 672 YFTFEIEVQN-VGKVDGSEVVMVYSKLPGIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDFAANSILAAGAH 750 (769)
Q Consensus 672 ~~~v~v~V~N-tG~~~G~evvQlYv~~p~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~~~~~~~~~G~y 750 (769)
.+.+++.+-| .....--.-.++|+.... .+. .+.....-.|.||++..|+|.+.. +.. +.+..|.+++..| -
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~~~l~~~t~~---~~~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g-~ 77 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQATVHIGSIR---QTA-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG-R 77 (87)
T ss_pred EEEEEEEEEcCCCcccCCCEeEEEEcCCE---EEE-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-C
Confidence 4666666666 233333344557766541 111 111111256899999999999643 346 4455677888888 5
Q ss_pred EEEEe
Q 047862 751 TILLG 755 (769)
Q Consensus 751 ~i~vG 755 (769)
++-+|
T Consensus 78 tva~G 82 (87)
T cd03708 78 TKGVG 82 (87)
T ss_pred cEEEE
Confidence 66666
No 41
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=44.24 E-value=17 Score=39.81 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChh--HHHHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGF--QTQLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~--q~~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||+||+..|... .+|.+|.++--... -.++++++.+.+++..|+++ .++|+|+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiiv-vsNPvDv 134 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLV-VGNPANT 134 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHH
Confidence 56789999999988642 45667754321111 12345566665552344333 3689976
No 42
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=42.46 E-value=6.3 Score=37.69 Aligned_cols=55 Identities=25% Similarity=0.467 Sum_probs=31.6
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQ----LINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||++|++.|... .+|.+|.++- ....+ +.+++.+.+++.+++|+ .+|+++
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred cccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHH
Confidence 35678999998877532 3455554331 22223 34455566666654443 679875
No 43
>COG1160 Predicted GTPases [General function prediction only]
Probab=42.16 E-value=55 Score=37.32 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 047862 467 SQATDAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLM 525 (769)
Q Consensus 467 ~~a~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~ 525 (769)
+++..++++||++|+++... +| +.....++.+-+. ..++|+|+|+|
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~G-------it~~D~~ia~~Lr-~~~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----EG-------ITPADEEIAKILR-RSKKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----CC-------CCHHHHHHHHHHH-hcCCCEEEEEE
Confidence 44667889999999998431 22 2333344444454 56789999987
No 44
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.04 E-value=1.4e+02 Score=29.87 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=51.4
Q ss_pred CceEEEEEEEEecCCCCcceeEEEEE-eCC-CCCCCcchhccccc--c-cccCCCCEEEEEEEeccCCCeeEEeCCCC--
Q 047862 670 DNYFTFEIEVQNVGKVDGSEVVMVYS-KLP-GIAGTPIKQLIGFQ--R-VYVAAGQSAKVNFTLNVCDSLRIIDFAAN-- 742 (769)
Q Consensus 670 ~~~~~v~v~V~NtG~~~G~evvQlYv-~~p-~~~~~P~k~L~gF~--k-v~L~pGes~~V~~~l~~~~~l~~~d~~~~-- 742 (769)
+..++|+++|.|.|+-+.-+|. |.= ++| ..- .-..|=. + -+|+||++.+-++.+.+ +....++-...
T Consensus 37 g~~v~V~~~iyN~G~~~A~dV~-l~D~~fp~~~F----~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a~V 110 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSAAYDVK-LTDDSFPPEDF----ELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPAVV 110 (181)
T ss_pred CcEEEEEEEEEECCCCeEEEEE-EECCCCCcccc----EeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCEEE
Confidence 3679999999999998776665 322 223 110 0111211 1 25999999999999998 56777765542
Q ss_pred -EEEcCeeEEEEEecCC
Q 047862 743 -SILAAGAHTILLGDGA 758 (769)
Q Consensus 743 -~~~~~G~y~i~vG~ss 758 (769)
+..+.|.=...++.|+
T Consensus 111 tY~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 111 TYRDSEGAKELQVAYSS 127 (181)
T ss_pred EEECCCCCceeEEEEec
Confidence 3444554445555554
No 45
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=42.03 E-value=12 Score=34.20 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.2
Q ss_pred cccCCCCCCCCCceeccc
Q 047862 611 VYPFGYGLSYTLFKYNLA 628 (769)
Q Consensus 611 ~ypFG~GLSYTtF~ys~~ 628 (769)
.|-.-||+.||+|....-
T Consensus 31 ~y~~~~g~g~~~f~~~~~ 48 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDG 48 (110)
T ss_dssp EEEEEEESSEEEEEEEET
T ss_pred cEEEEECCCeEEEEEEeC
Confidence 488999999999998753
No 46
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.44 E-value=1.5e+02 Score=33.99 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=34.1
Q ss_pred hhhHHHHHHccC--CCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEeCCceeeec
Q 047862 464 SMISQATDAAKN--ADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 464 ~~~~~a~~~a~~--aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
..+.+|.+.+.. .|++|++=|. +...+|. +-++..+++++++ ++.|||.- .|-=.|.+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGG--------GS~eDL~-~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~t 238 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGG--------GSLEDLW-AFNDEAVARAIAA-SRIPVISA--VGHETDFT 238 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCC--------CCHHHhh-ccCcHHHHHHHHc-CCCCEEEe--ccCCCCcc
Confidence 345555555554 5988876553 2222332 3456779999986 68897643 35444443
No 47
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=39.33 E-value=3.9e+02 Score=30.67 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=30.6
Q ss_pred HHcCCCceeeecccccCC-----ccccCCHHHHHHHHHhhcCCCeEEEcC
Q 047862 244 VREGDASSVMCSYNRVNG-----IPTCADSKLLNQTIRGDWNLHGYIVSD 288 (769)
Q Consensus 244 i~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gF~G~ViSD 288 (769)
|+++.+ ..|.+.+++.| ..||.++.+++.+|..=+.. |.-..+
T Consensus 51 iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R~A~ 98 (442)
T TIGR00450 51 KDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GARLAQ 98 (442)
T ss_pred eeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCeEcC
Confidence 445545 88999999988 57899999999988754433 443333
No 48
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=39.06 E-value=20 Score=39.20 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEeCCceeeec
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
+..++||+||++.|... .+|.+|.++- .... ++++++.+..++..++ ++.+||+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~N~~I~~~i~~~i~~~a~~~~iv-ivvtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLL--TKNTPIFKATGEALSEYAKPTVKV-LVIGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHhhCCCCeEE-EEeCCchHHH
Confidence 36789999999888642 3456664431 2222 3444555544332433 3446899763
No 49
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=38.37 E-value=24 Score=38.50 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=34.9
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEeCCceeeec
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPG--FQTQLINQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~--~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
+..++||+||++.|... +.|.+|.+|--.. -..++.+++.+.+++-+++ ...||+++.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivl--VvtNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVL--VVTNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEE--EecCcHHHH
Confidence 45789999999988643 5666775542111 1234556666666654333 346899873
No 50
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=38.14 E-value=2.2e+02 Score=30.54 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhccccCCCCccccCCCCCeeeEeecccccC
Q 047862 170 VGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAY 210 (769)
Q Consensus 170 ~~~~a~a~v~GlQ~~~g~~~~~~~~~~~~~V~a~~KHFpg~ 210 (769)
++.+...||+-+.+.+. ..+|++|=|.+||.
T Consensus 105 IAT~T~~~V~~~~~~~~----------~~~I~~TRKT~Pg~ 135 (277)
T TIGR01334 105 VATYTHKMVTLAKKISP----------MAVVACTRKAIPLT 135 (277)
T ss_pred HHHHHHHHHHHHHhcCC----------CCEEEecCCCCCCh
Confidence 57788889988876412 34599999999983
No 51
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=35.75 E-value=49 Score=25.99 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.4
Q ss_pred ceEEEEEEEEecCCCCcce
Q 047862 671 NYFTFEIEVQNVGKVDGSE 689 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~e 689 (769)
+.++.+++|+|+|......
T Consensus 12 d~v~Yti~v~N~g~~~a~~ 30 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATN 30 (53)
T ss_pred CEEEEEEEEEECCCCceEe
Confidence 6899999999999977654
No 52
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=34.70 E-value=39 Score=36.95 Aligned_cols=55 Identities=25% Similarity=0.462 Sum_probs=32.5
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||+||++.|... .+|.+|.++ | .... +..+++.+.+++-+ +++..||+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l-~~N~~I~~~i~~~i~~~~p~~i--iivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-F-NVNAGIVKDLVAAVAESCPKAM--ILVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-H-HHhHHHHHHHHHHHHHhCCCeE--EEEecCchhh
Confidence 46789999999998642 345666543 1 2222 33445555555543 3344789983
No 53
>PLN02303 urease
Probab=34.64 E-value=45 Score=40.91 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=32.2
Q ss_pred EEEEEEEEecCCCCcceeEEEEEeCC-CC----CCCcchhcccc-------cccccCCCCEEEEEEE
Q 047862 673 FTFEIEVQNVGKVDGSEVVMVYSKLP-GI----AGTPIKQLIGF-------QRVYVAAGQSAKVNFT 727 (769)
Q Consensus 673 ~~v~v~V~NtG~~~G~evvQlYv~~p-~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 727 (769)
=+++++|+|||+|+ ||+=-++. -. +..-...=.|| .-|+.+|||+|+|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 46889999999986 67644443 11 11112222222 2467899999999985
No 54
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=34.60 E-value=99 Score=36.00 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=38.2
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCCCCCCCcchhcc-cccccccCCCCEEEEEEEecc
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLPGIAGTPIKQLI-GFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p~~~~~P~k~L~-gF~kv~L~pGes~~V~~~l~~ 730 (769)
+-++++.|+|+|...-+.+.-.|.. |....-|..+.. -+-.-.|.|||+..|+|++..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4489999999999988777766654 111111121111 122235899999999999987
No 55
>PLN00135 malate dehydrogenase
Probab=33.24 E-value=28 Score=37.93 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=32.6
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhH----HHHHHHHHHh-cCCCEEEEEeCCceeeec
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQ----TQLINQVADA-AKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~v~~~-~~~pvVvVl~~g~P~~l~ 533 (769)
+..++||+||+..|... .+|.+|.++- ... .++++++.+. +++ .+++ +.+||+|+.
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll--~~N~~I~~~i~~~i~~~~~p~-aivi-vvsNPvDv~ 114 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVM--SKNVSIYKSQASALEKHAAPD-CKVL-VVANPANTN 114 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHHhcCCC-eEEE-EeCCcHHHH
Confidence 46789999999988642 3455664431 122 2345566653 444 3333 346899763
No 56
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=32.99 E-value=1.2e+02 Score=31.47 Aligned_cols=51 Identities=22% Similarity=0.117 Sum_probs=33.0
Q ss_pred EEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhccccc-ccccCCCCEEEEEEEec
Q 047862 674 TFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQ-RVYVAAGQSAKVNFTLN 729 (769)
Q Consensus 674 ~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~-kv~L~pGes~~V~~~l~ 729 (769)
.++++|+|+|+. .-.+|.-+... .....| +.-.= -..|+||+++.|.+...
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~---fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKL---LLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCC---EEEcCCeEEECCCCceEEEEEEC
Confidence 478888999976 48889988765 221111 11111 13589999999998643
No 57
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=32.71 E-value=30 Score=30.39 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=16.5
Q ss_pred CcchhcccccccccCCCCEEEEEEEecc
Q 047862 703 TPIKQLIGFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 703 ~P~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (769)
.|.--|+- +|.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~~--~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQV--RVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEEE--EEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEEE--EEEECCCCEEEEEEEEEE
Confidence 34444443 678999999999998754
No 58
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=32.55 E-value=1.3e+02 Score=28.69 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=14.2
Q ss_pred ccCCCCEEEEEEEecc
Q 047862 715 YVAAGQSAKVNFTLNV 730 (769)
Q Consensus 715 ~L~pGes~~V~~~l~~ 730 (769)
.|+|||+++++|+.+.
T Consensus 95 ~I~pGet~TitF~adK 110 (135)
T TIGR03096 95 VIKAGETKTISFKADK 110 (135)
T ss_pred EECCCCeEEEEEECCC
Confidence 4899999999999876
No 59
>PRK05442 malate dehydrogenase; Provisional
Probab=32.50 E-value=28 Score=38.28 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=31.9
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEeCCceeeec
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQ----LINQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
+..++||+||++.|... .+|.+|.++- ....+ +.+++.+..+...++ ++.++|+|+.
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~ii-ivvsNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDLL--EANGAIFTAQGKALNEVAARDVKV-LVVGNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEE-EEeCCchHHH
Confidence 56789999999888532 3566664431 22223 344555533222333 3446899763
No 60
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=32.31 E-value=37 Score=39.42 Aligned_cols=47 Identities=26% Similarity=0.243 Sum_probs=34.2
Q ss_pred HHhhcCCCeEEEcCchhHHHhhhhcccccCCHHHHHHHHHHcCCCCCCC
Q 047862 275 IRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCG 323 (769)
Q Consensus 275 LR~e~gF~G~ViSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 323 (769)
|++=+||+|.|+||.++-+-..- .....++++.+.---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~--g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVY--GDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEc--CCccCCHHHHHHHHHHhCCCEEeE
Confidence 67778999999999998654432 123467877766666679999874
No 61
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=32.31 E-value=73 Score=28.91 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=29.9
Q ss_pred ceEEEEEEEEecCCCCcce-eEEEEEeCC-CCCCCcchhcc----cccccccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDGSE-VVMVYSKLP-GIAGTPIKQLI----GFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~e-vvQlYv~~p-~~~~~P~k~L~----gF~kv~L~pGes~~V~~~l~~ 730 (769)
.-+.|+|+|+|+|+-+-.- ..+..+.+. +..-.+....- .+.-..|.||++.+..+-+..
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 5689999999999855432 124444444 33222222111 144567999999987775554
No 62
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=31.74 E-value=93 Score=34.39 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=32.9
Q ss_pred ceEEEEEEEEecCCCCc--ceeEEEEEeCC-C------CCCCcchhcc-ccc---ccccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDG--SEVVMVYSKLP-G------IAGTPIKQLI-GFQ---RVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G--~evvQlYv~~p-~------~~~~P~k~L~-gF~---kv~L~pGes~~V~~~l~~ 730 (769)
..++++++|||.|+-+= .|---.=|++. . ....|.--|. |-. ...|+|||+|+|+++..-
T Consensus 282 R~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 282 RALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred cEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 47999999999987431 11111112221 1 1233432222 221 224899999999998753
No 63
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=31.62 E-value=54 Score=27.39 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.2
Q ss_pred CceEEEEEEEEecCCCCcce
Q 047862 670 DNYFTFEIEVQNVGKVDGSE 689 (769)
Q Consensus 670 ~~~~~v~v~V~NtG~~~G~e 689 (769)
++.++.+++|+|+|......
T Consensus 40 Gd~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CCEEEEEEEEEECCCCeeEe
Confidence 36899999999999988665
No 64
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.90 E-value=2.7e+02 Score=31.96 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=32.6
Q ss_pred hhHHHHHHccC---CCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEeCCceeeec
Q 047862 465 MISQATDAAKN---ADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 465 ~~~~a~~~a~~---aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
.+.+|.+.+.. .|++|++=|. +...+|. +-+...++++++. ++.|||.- .|-=.|.+
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFL-SKIPIISA--VGHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHc-CCCCEEEe--cCcCCCcc
Confidence 34445544333 6888876553 2222332 3456778899985 78897643 36555544
No 65
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=30.90 E-value=1.4e+02 Score=24.18 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHhc-CCCEEEEEe
Q 047862 502 PGFQTQLINQVADAA-KGPVILVLM 525 (769)
Q Consensus 502 p~~q~~Li~~v~~~~-~~pvVvVl~ 525 (769)
...|..|.+++.... ++|+|+|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 358999999998876 689988875
No 66
>PRK05086 malate dehydrogenase; Provisional
Probab=30.82 E-value=37 Score=37.01 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=32.6
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPG---FQTQLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~---~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..+++|+||++.|... .++.+|.++- .. --.++++++.+.+++.+| ++..||+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dll-~~N~~i~~~ii~~i~~~~~~~iv--ivvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDLF-NVNAGIVKNLVEKVAKTCPKACI--GIITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHhCCCeEE--EEccCchHH
Confidence 45678999999998643 2334554331 11 123456667665555443 345789964
No 67
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=30.46 E-value=31 Score=37.40 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=33.1
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChh--HHHHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGF--QTQLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~--q~~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+.+++||++|++.|... .+|.+|.++..-.. -.++.+++.+.+++ .+ |++.++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~-~~-viv~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGPD-AI-ILVVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccChHHH
Confidence 46789999999998642 35666754322111 12344555555544 33 4445789876
No 68
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.44 E-value=36 Score=37.18 Aligned_cols=55 Identities=27% Similarity=0.407 Sum_probs=32.4
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..+++|+||++.|... .+|.+|.++ -.... +.++++.+.+++-+ +++..||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p~a~--vivvtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACPKAL--ILIISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCeE--EEEccCchhh
Confidence 56789999999988642 345566443 12222 33445555555533 3345789976
No 69
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=30.30 E-value=3e+02 Score=24.31 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=33.5
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhcccccccccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (769)
+..+++++++|+.+.+-.=--.+|==+. +-...|. .-.++++.|.|+|+.+|+..-+.
T Consensus 24 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 24 GLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 6789999999999877554444554455 3222232 25789999999999999886654
No 70
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.89 E-value=39 Score=37.06 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQ----LINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||+||++.|... .+|.+|.++ -....+ +..++.+.++...+ +++.++|+|+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~i-iivvsNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVK-VLVVGNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeE-EEEecCcHHH
Confidence 56789999999988642 345566443 122223 34455554421333 3344689976
No 71
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=29.52 E-value=29 Score=39.73 Aligned_cols=56 Identities=13% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHH-hcCCCEEEEEeCCceeeec
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVAD-AAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~-~~~~pvVvVl~~g~P~~l~ 533 (769)
+..++||+||+..|... ++|.+|.++- .... ++.+++.+ +.++ .+ |++.+||+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl--~~N~~I~k~i~~~I~~~a~p~-~i-vIVVsNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLL--DINGQIFAEQGKALNEVASRN-VK-VIVVGNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCC-eE-EEEcCCcHHHH
Confidence 46789999999888532 4566775431 2222 23445554 3343 33 33457999763
No 72
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=29.21 E-value=30 Score=39.01 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=31.4
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHH----HHHHHhcCCCEEEEEeCCceeeec
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLI----NQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li----~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
+..+++|+||++.|.. . .+|.+|.++ -....+++ +++.+..+...| |++.++|+|+.
T Consensus 116 ~~~kdaDIVVitAG~p-r--kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~i-viVVsNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKP-R--GPGMERADL--LDINGQIFADQGKALNAVASKNCK-VLVVGNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCC-C--CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeE-EEEcCCcHHHH
Confidence 4678999999988854 2 345566443 12223333 344442322333 34457999763
No 73
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=29.09 E-value=2e+02 Score=27.42 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=40.8
Q ss_pred ceEEEEEEEEecCCCCc-ceeEEEEEeCC-CC-----CCCcchhcccc--cccccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDG-SEVVMVYSKLP-GI-----AGTPIKQLIGF--QRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G-~evvQlYv~~p-~~-----~~~P~k~L~gF--~kv~L~pGes~~V~~~l~~ 730 (769)
+.+.|+.+++|+++.+= -=.++|-+.+. +. +-.|..-|..- .+..|+||++.++++.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 57999999999998743 23455555555 32 33554444433 2445999999999998874
No 74
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.37 E-value=39 Score=37.08 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=31.8
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhc-CCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAA-KGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~-~~pvVvVl~~g~P~~l 532 (769)
+..++||+||+..|... .+|.+|.++- .... ++..++.+.. ++ .+++ +.++|+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dll--~~N~~i~~~i~~~i~~~~~~~-~iii-vvsNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADLL--RKNAKIFKEQGEALNKVAKPT-VKVL-VVGNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHHH--HHhHHHHHHHHHHHHHhCCCC-eEEE-EeCCcHHH
Confidence 56789999999888542 3455664432 1222 3445555543 44 3333 34689976
No 75
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=27.91 E-value=47 Score=34.30 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=39.1
Q ss_pred HHHHHHcCCCceeeecccccCCccc-cCCHHHHHHHHHhhcCCCeEEEcCchh
Q 047862 240 FEMCVREGDASSVMCSYNRVNGIPT-CADSKLLNQTIRGDWNLHGYIVSDCDS 291 (769)
Q Consensus 240 F~~ai~~g~~~~vM~sy~~vng~pa-~~s~~ll~~lLR~e~gF~G~ViSD~~~ 291 (769)
|+.|++...+ +||++||...|-|. +.....+|.-|.+-+.+-|+.+=|-.-
T Consensus 158 ~k~Al~~nAa-avIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiI 209 (224)
T COG2003 158 FKEALKYNAA-AVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHII 209 (224)
T ss_pred HHHHHHhcch-hhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEE
Confidence 6788888754 99999999988544 334556788899999998887777543
No 76
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=27.61 E-value=50 Score=35.95 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.8
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP 698 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p 698 (769)
....+.|.|.|.|.+.|-+ =+|++.|
T Consensus 246 ~~~v~~vsv~~~g~~~~~~--~~~~svP 271 (309)
T cd05294 246 ERRILTVSTYLEGEIDGIR--DVCIGVP 271 (309)
T ss_pred CCeEEEEEEEECCccCCCC--CeEEEeE
Confidence 3456778888989876643 5788887
No 77
>PLN02602 lactate dehydrogenase
Probab=27.22 E-value=37 Score=37.71 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=31.9
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||+||++.|... .+|.+|.++- .... ++++++.+.+++- +++ +..+|+++
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll--~~N~~I~~~i~~~I~~~~p~~-ivi-vvtNPvdv 159 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLL--QRNVALFRKIIPELAKYSPDT-ILL-IVSNPVDV 159 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHHHCCCe-EEE-EecCchHH
Confidence 34789999999988642 3456675432 2222 3444555555553 333 33589876
No 78
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=26.57 E-value=4.7e+02 Score=27.68 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=25.2
Q ss_pred HHHHHHcCCCceeeecccccCCccccCCHHHHHHHHHhhcCCCeEEEcCchhHHH
Q 047862 240 FEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQT 294 (769)
Q Consensus 240 F~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~~~~ 294 (769)
|++..+.+.+-.++++|.. +.-.|=++.||+.+.++|+..|..
T Consensus 4 lr~l~~~~~~l~~~~ayD~------------~sA~l~e~aG~d~i~vGds~~~~~ 46 (254)
T cd06557 4 LQKMKKAGEKIVMLTAYDY------------PTAKLADEAGVDVILVGDSLGMVV 46 (254)
T ss_pred HHHHHhCCCcEEEEeCCCH------------HHHHHHHHcCCCEEEECHHHHHHH
Confidence 5555555655333444432 223344677888888888877654
No 79
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=26.33 E-value=4.6e+02 Score=23.24 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=39.5
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhcccccccccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (769)
+..++++.|+|+.+.+-.=-=.+|==+. +-...|. ...++.+.|.++|+.+|...-+-
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 5689999999999755433333333334 2222333 57899999999999999876554
No 80
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=26.15 E-value=7.8e+02 Score=28.26 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=27.5
Q ss_pred HHHcCCCceeeecccccCC-----ccccCCHHHHHHHHHhhc
Q 047862 243 CVREGDASSVMCSYNRVNG-----IPTCADSKLLNQTIRGDW 279 (769)
Q Consensus 243 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~ 279 (769)
.|+++.+ ..|.+.+++.| ..||.|+.+++.+|..=+
T Consensus 58 ~iD~~l~-~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~l~ 98 (449)
T PRK05291 58 VIDEVLV-LYFPAPNSFTGEDVVEIQCHGGPAVLNLILELLL 98 (449)
T ss_pred ccceEEE-EEecCCCCccCCcEEEEECCCCHHHHHHHHHHHH
Confidence 4555555 88888898887 578999999988887543
No 81
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=25.92 E-value=45 Score=36.27 Aligned_cols=53 Identities=21% Similarity=0.470 Sum_probs=30.0
Q ss_pred ccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHH----HHHHHHhcCCCEEEEEeCCceeee
Q 047862 473 AKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQL----INQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 473 a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~L----i~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
++++|++|+++|... .++.+|.++ -....++ ++++.+.+++.+| ++..||+++
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~l--~~~N~~iv~~i~~~I~~~~p~~~i--Iv~tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSREDL--LSMNAGIVREVTGRIMEHSPNPII--VVVSNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCCCeEE--EEecCcHHH
Confidence 578999999998643 234444332 2223333 4445555555433 334689876
No 82
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=25.35 E-value=1.4e+02 Score=28.11 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=14.0
Q ss_pred HHHHHHccCCCEEEEEEc
Q 047862 467 SQATDAAKNADATIIVTG 484 (769)
Q Consensus 467 ~~a~~~a~~aD~vIvvvG 484 (769)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 356677889999988874
No 83
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.29 E-value=2e+02 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=28.7
Q ss_pred HHHHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEE
Q 047862 469 ATDAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILV 523 (769)
Q Consensus 469 a~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvV 523 (769)
.....+++|+||++++.- ...-...+++.|+..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 345778999999998642 2244567888888888997644
No 84
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=24.85 E-value=1.6e+02 Score=30.64 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=34.6
Q ss_pred EEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhccccccc-ccCCCCEEEEEEEec
Q 047862 674 TFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRV-YVAAGQSAKVNFTLN 729 (769)
Q Consensus 674 ~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~ 729 (769)
.++++|+|+|+. .-.||..+... .....+...+.-.=-+ +|+||+++.+.|...
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 578888999986 78999998764 2111111112222223 489999999997654
No 85
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=24.39 E-value=48 Score=36.23 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=31.8
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||+||++.|... .+|.+|.++- .... ++++++.+.+++.+ |++.++|.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dll--~~N~~i~~~i~~~i~~~~~~~~--vivvsNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDLV--EKNLKIFKSIVGEVMASGFDGI--FLVASNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCeE--EEEccCcHHH
Confidence 45789999999988642 3456664431 1222 23445555555433 3345689876
No 86
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=23.36 E-value=1.1e+02 Score=27.22 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=32.5
Q ss_pred CceEEEEEEEEecCCCC------------cceeEEEEEeCCCCCCCcchhcccccc-cccCCCCEEEEEEEecc
Q 047862 670 DNYFTFEIEVQNVGKVD------------GSEVVMVYSKLPGIAGTPIKQLIGFQR-VYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 670 ~~~~~v~v~V~NtG~~~------------G~evvQlYv~~p~~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~ 730 (769)
++.+..+|+|+|+|+.+ |.++.++.-...+.-... ..+++-.= -.|+||++.++-|....
T Consensus 12 ~~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~-~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 12 GGGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNT-VTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SSEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTE-EEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCE-EEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 35788999999999876 333333332111000111 12322211 14788888887777765
No 87
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=23.31 E-value=50 Score=35.85 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=31.6
Q ss_pred HccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEeCCceeeec
Q 047862 472 AAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQ----LINQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 472 ~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
.++++|++|++.|... .+|.+|.++ -..... ..+++.+.+++- + |++.++|+++.
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~~~-~-vivvsNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGFDG-I-FLVASNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCe-E-EEEecChHHHH
Confidence 4579999999998642 356666433 122223 344455545543 3 34446899763
No 88
>PRK13556 azoreductase; Provisional
Probab=23.19 E-value=1.7e+02 Score=29.64 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHH
Q 047862 467 SQATDAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVAD 514 (769)
Q Consensus 467 ~~a~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~ 514 (769)
++..+..++||.+|++.-.. ++.+|..-..+|+.+..
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhc
Confidence 44556788999988875321 45677776777887764
No 89
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.94 E-value=1.5e+02 Score=20.64 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCcHHHHHhHHHHHH
Q 047862 328 NFTVGAVQQGKVRETDIDRSLRFLY 352 (769)
Q Consensus 328 ~~l~~av~~g~i~~~~id~av~RiL 352 (769)
..|.+...+|.|+++...+.-++||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5678889999999999999988886
No 90
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=22.76 E-value=1.6e+02 Score=31.06 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=35.4
Q ss_pred EEEEEEEecCCCCcceeEEEEEeCCCCCCCcch----hccccccc-ccCCCCEEEEEEEec
Q 047862 674 TFEIEVQNVGKVDGSEVVMVYSKLPGIAGTPIK----QLIGFQRV-YVAAGQSAKVNFTLN 729 (769)
Q Consensus 674 ~v~v~V~NtG~~~G~evvQlYv~~p~~~~~P~k----~L~gF~kv-~L~pGes~~V~~~l~ 729 (769)
.++++|+|+|+. .-.||..+........|.+ .+.-.==+ +|+||+.+.|.|...
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 478888999986 5999999865322222322 13333333 489999999997654
No 91
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=22.57 E-value=1.9e+02 Score=25.17 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=40.2
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhcccccccccCCCCEEEEEEEeccCCCeeEEeC
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRVYVAAGQSAKVNFTLNVCDSLRIIDF 739 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~l~~~d~ 739 (769)
..++|.+++.|.+.....-.+++.+..+ ...... .-..+.+..++...+.+++.. .....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVT-----QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEE-----EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEE-----eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 4577777779999999999999998887 321111 122334566666666455554 34677776
No 92
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=22.52 E-value=46 Score=36.10 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=32.2
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||+||++.|... .+|.+|.++ -.... +..+++.+.+++ .+ |++.++|+++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p~-~~-vivvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSGFD-GI-FLVATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEeCCHHHH
Confidence 46789999999888642 345666443 12222 344555555444 33 4445789876
No 93
>PRK13555 azoreductase; Provisional
Probab=21.51 E-value=1.7e+02 Score=29.93 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=24.3
Q ss_pred hHHHHHHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHH
Q 047862 466 ISQATDAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVAD 514 (769)
Q Consensus 466 ~~~a~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~ 514 (769)
+.+..+..+.||.+|++.-. + ++.+|..-...|+.+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~--~---------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPL--W---------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCc--c---------cccchHHHHHHHHHHhc
Confidence 34456678899998877532 1 34567666666776654
No 94
>PTZ00325 malate dehydrogenase; Provisional
Probab=21.47 E-value=62 Score=35.51 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=33.6
Q ss_pred HHHccCCCEEEEEEcCCCCcccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 470 TDAAKNADATIIVTGLDLSIEAEALDRNDLYLPG---FQTQLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 470 ~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~---~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
.+..+++|+||++.|... .++.+|.++ |.. .-.++++++.+...+.+| +++.+|++.
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~~iv--iv~SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPKAIV--GIVSNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCeEE--EEecCcHHH
Confidence 356789999999998642 233445433 222 123456666665555543 345679876
No 95
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.37 E-value=70 Score=35.13 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhH--HHHHHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQ--TQLINQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q--~~Li~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..+++|+||++.|... .++.+|.++.-.... .++...+.+..+...++++ .++|+++
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLV-VGNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE-ecCcHHH
Confidence 45679999999888642 234455332111111 2334555554322344333 3589976
No 96
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=21.34 E-value=1.9e+02 Score=31.22 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=35.1
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CC---C----CCcc----hhccccc--ccccCCCCEEEEEEEecc
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GI---A----GTPI----KQLIGFQ--RVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~---~----~~P~----k~L~gF~--kv~L~pGes~~V~~~l~~ 730 (769)
....+++|+|..+.+=+ |+|.=+.| +. + ..|. .+-.|.- ++.|+|||+++++|.+..
T Consensus 243 ~~~~~itv~N~~~~~v~--v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVT--VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEV 313 (317)
T ss_pred EEEEEEEEECCCCCCEE--EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEE
Confidence 57889999999965544 55665656 43 1 1221 1222222 345889998888887654
No 97
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=21.29 E-value=3.7e+02 Score=28.97 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhccccCCCCccccCCCCCeeeEeecccccC
Q 047862 170 VGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAY 210 (769)
Q Consensus 170 ~~~~a~a~v~GlQ~~~g~~~~~~~~~~~~~V~a~~KHFpg~ 210 (769)
++.+...||+-+++.+. ..+|++|=|.+||.
T Consensus 106 IAT~T~~~V~~~~~~~~----------~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRERYP----------DGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHhhCC----------CcEEEecCcCCCch
Confidence 57788888888875412 34599999999984
No 98
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.09 E-value=53 Score=35.78 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=31.2
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHH----HHHHHHhcCCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQL----INQVADAAKGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~L----i~~v~~~~~~pvVvVl~~g~P~~l 532 (769)
+..++||+||++.|... .+|.+|..+.|=....++ ++++.+..++-+ +++..||+|+
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i--~ivvsNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAV--IILITNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeE--EEEecCcHHH
Confidence 46789999999988642 234442112222233333 445555555533 3344689886
No 99
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.98 E-value=5.1e+02 Score=28.01 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=41.5
Q ss_pred ceEEEEEEEEecCCCCcceeEEEEEeCCCCCCCcchhccc-ccccccCCCCEEEEEEEecc
Q 047862 671 NYFTFEIEVQNVGKVDGSEVVMVYSKLPGIAGTPIKQLIG-FQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 671 ~~~~v~v~V~NtG~~~G~evvQlYv~~p~~~~~P~k~L~g-F~kv~L~pGes~~V~~~l~~ 730 (769)
..+-|.|+|+|...-.-=..-+..+..+. ..+.|.+.= ++.=.|.||++.+|-+.++.
T Consensus 202 ~~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~ 260 (289)
T PF09544_consen 202 GWVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA 260 (289)
T ss_pred CeEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC
Confidence 46889999999655444445566666652 344554444 77778999999999999885
No 100
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=20.91 E-value=70 Score=35.13 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHH----HHHHHHHHhc-CCCEEEEEeCCceeee
Q 047862 471 DAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQT----QLINQVADAA-KGPVILVLMCAGGVDI 532 (769)
Q Consensus 471 ~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~-~~pvVvVl~~g~P~~l 532 (769)
+..+++|+||+..|... .++.+|.++ -.... ++.+++.+.. ++ .|+++ .+||+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~-~iiiv-vsNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKD-CKVLV-VGNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCC-eEEEE-eCCcHHH
Confidence 46789999999888642 234455332 12222 3445555542 33 44333 4689976
No 101
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=20.88 E-value=1.3e+02 Score=28.98 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.7
Q ss_pred hhcccccccccCCCCEEEEEEEecc
Q 047862 706 KQLIGFQRVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 706 k~L~gF~kv~L~pGes~~V~~~l~~ 730 (769)
..|.+-+++.|.|||+++++++++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 3577788889999999999999986
No 102
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.83 E-value=2.2e+02 Score=33.34 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=34.5
Q ss_pred eEEEEEEEEecCCCCcceeEEEEEeCC-CCC-------CCcc-hhc---c---ccc--ccccCCCCEEEEEEEecc
Q 047862 672 YFTFEIEVQNVGKVDGSEVVMVYSKLP-GIA-------GTPI-KQL---I---GFQ--RVYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 672 ~~~v~v~V~NtG~~~G~evvQlYv~~p-~~~-------~~P~-k~L---~---gF~--kv~L~pGes~~V~~~l~~ 730 (769)
..+.+++|+|+++.+ ..|.|+=+.| +.. ..|. ... + |-- ++.|+|||+++++|.+..
T Consensus 443 ~~~~~i~v~N~~~~~--v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v 516 (525)
T TIGR02231 443 EYAYRITLKNLRKEP--ERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKV 516 (525)
T ss_pred EEEEEEEEEcCCCCc--eEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEE
Confidence 467899999998874 3445555556 431 1121 111 1 211 356899999999988765
No 103
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=20.80 E-value=1.1e+02 Score=34.54 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeC-Cceeeeccccc-------CCCccEEEEccCCCchhHHHHHHHHhcC
Q 047862 506 TQLINQVADAAKGPVILVLMC-AGGVDISFAKN-------NPKIKSILWAGYPGEEGGRAIADIVFGK 565 (769)
Q Consensus 506 ~~Li~~v~~~~~~pvVvVl~~-g~P~~l~~~~~-------~~~v~Ail~a~~pG~~~g~AlAdVL~G~ 565 (769)
.++|++..+.+++||++|..| |+++...++.. ...|+++|...-|=.-+.+|+..+++|+
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~ 174 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD 174 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence 356777766667899988886 66665433321 1368888877666555778999999998
No 104
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=20.76 E-value=2.2e+02 Score=29.66 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=32.9
Q ss_pred EEEEEEEecCCCCcceeEEEEEeCC-CCCCCcchhcccccc----cccCCCCEEEEEEEecc
Q 047862 674 TFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQR----VYVAAGQSAKVNFTLNV 730 (769)
Q Consensus 674 ~v~v~V~NtG~~~G~evvQlYv~~p-~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~~ 730 (769)
.++++|+|+++ ..-..||..+... ..... .|-= .+|+||+.+++.|-...
T Consensus 44 ~~sv~i~N~~~-~~p~LvQsWv~~~~~~~~~------pFivtPPlfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSA-SNVFLIQSWVANADGSRST------DFIITPPLFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCC-CccEEEEEEEecCCCCccC------CEEEcCCeEEECCCCceEEEEEECC
Confidence 58889999985 2236799999765 32111 1222 24899999999986653
No 105
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=20.63 E-value=2.9e+02 Score=27.17 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=28.3
Q ss_pred hHHHHHHccCCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 047862 466 ISQATDAAKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLM 525 (769)
Q Consensus 466 ~~~a~~~a~~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~ 525 (769)
..+....++.+|.+|+++... +| +.....+.++.+ +..+.|+|||++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~-~~~~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKIL-RELGIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHH-HHTT-SEEEEEE
T ss_pred eecccceecccccceeeeecc-----cc-------cccccccccccc-cccccceEEeee
Confidence 345566788999999999532 11 122334455554 445778888876
No 106
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.11 E-value=4e+02 Score=28.89 Aligned_cols=58 Identities=24% Similarity=0.262 Sum_probs=32.8
Q ss_pred hhhHHHHHHcc------CCCEEEEEEcCCCCcccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEeCCceeeec
Q 047862 464 SMISQATDAAK------NADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDIS 533 (769)
Q Consensus 464 ~~~~~a~~~a~------~aD~vIvvvG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 533 (769)
..+-+|.+.+. ..|++|++=|. +...+|. +-+...++++++. ++.|||.- .|-=.|.+
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGG--------Gs~eDL~-~FN~e~varai~~-~~~Pvisa--IGHe~D~t 121 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGG--------GSIEDLW-AFNDEEVARAIAA-SPIPVISA--IGHETDFT 121 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCC--------CChHHhc-ccChHHHHHHHHh-CCCCEEEe--cCCCCCch
Confidence 34445544443 47888776553 2222332 3366789999986 67897643 35444443
Done!