BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047865
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08215|ATPA_PEA ATP synthase subunit alpha, chloroplastic OS=Pisum sativum GN=atpA
PE=3 SV=1
Length = 501
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 40 LDNVTHPLYK--EDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLR 97
L V + L K + E T + + P + ++ ++P L D+ + + R
Sbjct: 105 LGRVVNALAKPIDGRGEISTSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIG--R 162
Query: 98 GKRLMLVGD-----------SIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVL 146
G+R +++GD +I Q Q+LVC+ ++ + ++T +E
Sbjct: 163 GQRELIIGDRQTGKTAVATDTILNQQGQNLVCVYVAIGQKASSVAQVVTTLQERGAMEYT 222
Query: 147 LTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLI 205
+ + +D ATL+ Y AP+ + A+ R+ +++ + +KH Q ++ + L+
Sbjct: 223 IVVAETADSPATLQ-YLAPYTGAALAEYFMYRE--RHTLIIYDDPSKHAQAYRQMSLLL 278
>sp|Q06RE6|ATPA_JASNU ATP synthase subunit alpha, chloroplastic OS=Jasminum nudiflorum
GN=atpA PE=3 SV=1
Length = 504
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 68 PDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGD-----------SIHYNQWQSL 116
P + ++ ++P L D+ + + RG+R +++GD +I Q Q++
Sbjct: 135 PGIISRRSVYEPLQTGLVAIDSMIPIG--RGQRELIIGDRQTGKTAVATDTILNQQGQNV 192
Query: 117 VCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPT 176
+C+ ++ + ++T +E + + +D ATL+ Y AP+ + A+
Sbjct: 193 ICVYVAIGQKASSVAQVVTTLQEGGAMEYTIVVAEMADSPATLQ-YLAPYTGAALAEYFM 251
Query: 177 MRDGKLDPVVMPESITKHGQNWKGVDYLI 205
R K +++ + ++K Q ++ + L+
Sbjct: 252 YR--KQHTLIIYDDLSKQAQAYRQMSLLL 278
>sp|Q1XDP5|ATPA_PORYE ATP synthase subunit alpha, chloroplastic OS=Porphyra yezoensis
GN=atpA PE=3 SV=1
Length = 504
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 32 DIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKL 91
D F G+ V+D + P+ +D+ E + + + P + ++ +P + D+ +
Sbjct: 102 DAFLGR-VVDPLARPI--DDKGEPASNGTRLIESMAPGIIGRQSVCEPMQTGITAIDSMI 158
Query: 92 LLNKLRGKRLMLVGD-----------SIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTA 140
+ RG+R +++GD +I + Q +VC+ ++ + +S+
Sbjct: 159 PIG--RGQRELIIGDRQTGKTAVALDTIINQKGQDVVCVYVAIGQKASSVAQVVSSLQDK 216
Query: 141 FTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKG 200
L+ + + + +D ATL+ Y AP+ + A+ M GK +V+ + +TK Q ++
Sbjct: 217 GALDYTIIVAANADSPATLQ-YIAPYTGAALAE-YFMYKGKA-TLVIYDDLTKQAQAYRQ 273
Query: 201 VDYLI 205
+ L+
Sbjct: 274 MSLLL 278
>sp|Q8S8Y3|ATPA_ATRBE ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna
GN=atpA PE=3 SV=1
Length = 507
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 40 LDNVTHPLYK--EDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLR 97
L V + L K + E + + P + ++ ++P L D+ + + R
Sbjct: 105 LGRVVNALAKPIDGRGEISASEFRLIESAAPGIISRRSVYEPLQTGLIAIDSMIPIG--R 162
Query: 98 GKRLMLVGD-----------SIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVL 146
G+R +++GD +I Q Q+++C+ ++ + ++T +E
Sbjct: 163 GQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYT 222
Query: 147 LTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLI 205
+ + +D ATL+ Y AP+ S A+ R+ +++ + ++K Q ++ + L+
Sbjct: 223 IVVAETADSPATLQ-YLAPYTGASLAEYFMYRE--RHTLIIYDDLSKQAQAYRQMSLLL 278
>sp|Q08BN9|NXPE3_DANRE NXPE family member 3 OS=Danio rerio GN=nxpe3 PE=2 SV=1
Length = 566
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 68 PDSLYQKWRWQPTDCSLPR-FDAKLLLNK-LRGKRLMLVGDSIHYNQWQSLVCMVQSVIP 125
P Y + W+P +PR F+ L+N+ LRGK L + GDS ++ L+ V
Sbjct: 323 PSGYYYQGSWRPLSGVVPRQFNTSSLINQCLRGKMLYMYGDSTVRQWYEYLITNV----- 377
Query: 126 PGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEF 161
P K + S + + V + +YNA L++
Sbjct: 378 PEFKEFNFHSAKNVGPYMGVNM------NYNALLKY 407
>sp|B2TPW4|ENO_CLOBB Enolase OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=eno PE=3 SV=1
Length = 431
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 17 KANQDRKVVLPLEKCDIFA-GKWVLDNVTHPLYKEDECEFLTEWVT-----CLRNGRPDS 70
KA +D + + + + GK+VL+N L + +F +WV + +G +
Sbjct: 235 KAGEDMFIAIDAASSEYYKDGKYVLENEGKTLTSAEMVDFFEDWVNKYPIISIEDGMAEE 294
Query: 71 LYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSL 116
+ W+ LLN+ GK++ LVGD + + L
Sbjct: 295 DWDGWK---------------LLNERLGKKVQLVGDDLFVTNTERL 325
>sp|B2UY16|ENO_CLOBA Enolase OS=Clostridium botulinum (strain Alaska E43 / Type E3)
GN=eno PE=3 SV=1
Length = 431
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 17 KANQDRKVVLPLEKCDIFA-GKWVLDNVTHPLYKEDECEFLTEWVT-----CLRNGRPDS 70
KA +D + + + + GK+VL+N L + +F +WV + +G +
Sbjct: 235 KAGEDMFIAIDAASSEYYKDGKYVLENEGKTLTSAEMVDFFEDWVNKYPIISIEDGMAEE 294
Query: 71 LYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSL 116
+ W+ LLN+ GK++ LVGD + + L
Sbjct: 295 DWDGWK---------------LLNERLGKKVQLVGDDLFVTNTERL 325
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,546,057
Number of Sequences: 539616
Number of extensions: 6376444
Number of successful extensions: 12210
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12208
Number of HSP's gapped (non-prelim): 7
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)