Query 047869
Match_columns 2233
No_of_seqs 157 out of 219
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2752 Uncharacterized conser 99.4 4.5E-14 9.7E-19 161.9 2.1 102 1574-1681 26-130 (345)
2 KOG1777 Putative Zn-finger pro 99.4 3.2E-13 7E-18 159.1 4.5 86 1573-1659 528-614 (625)
3 KOG0943 Predicted ubiquitin-pr 99.2 2.6E-12 5.6E-17 160.1 2.8 71 1587-1659 1239-1310(3015)
4 PF02207 zf-UBR: Putative zinc 99.2 7.3E-12 1.6E-16 118.6 3.7 58 1589-1650 1-60 (71)
5 smart00396 ZnF_UBR1 Putative z 99.0 4.8E-10 1E-14 107.0 5.5 64 1589-1656 1-68 (71)
6 KOG1776 Zn-binding protein Pus 99.0 2.3E-11 4.9E-16 148.3 -4.9 62 1588-1650 764-826 (1110)
7 PF10168 Nup88: Nuclear pore c 97.9 0.00077 1.7E-08 87.7 22.4 218 1809-2036 32-312 (717)
8 cd00200 WD40 WD40 domain, foun 97.7 0.068 1.5E-06 56.0 28.9 185 1818-2039 20-207 (289)
9 cd00200 WD40 WD40 domain, foun 97.6 0.057 1.2E-06 56.6 26.8 153 1865-2039 11-165 (289)
10 PLN00181 protein SPA1-RELATED; 97.0 1.1 2.4E-05 59.4 33.8 156 1814-1987 489-648 (793)
11 PF10282 Lactonase: Lactonase, 96.9 0.61 1.3E-05 55.9 28.8 259 1814-2097 42-325 (345)
12 PRK11028 6-phosphogluconolacto 96.6 1.7 3.7E-05 51.0 28.5 197 1814-2030 40-248 (330)
13 PRK11028 6-phosphogluconolacto 96.3 3.3 7.1E-05 48.7 31.6 253 1867-2145 38-305 (330)
14 PLN00181 protein SPA1-RELATED; 96.1 1.5 3.3E-05 58.1 27.0 160 1863-2039 483-648 (793)
15 KOG0291 WD40-repeat-containing 95.8 5.7 0.00012 52.7 28.9 150 1814-1987 61-219 (893)
16 PTZ00421 coronin; Provisional 95.2 2.6 5.6E-05 53.9 23.2 196 1819-2040 88-291 (493)
17 KOG0318 WD40 repeat stress pro 93.2 22 0.00049 46.1 24.7 262 1865-2144 192-473 (603)
18 KOG0283 WD40 repeat-containing 92.9 0.63 1.4E-05 61.2 11.6 117 1866-1987 412-576 (712)
19 KOG2110 Uncharacterized conser 92.9 9.5 0.00021 47.6 20.4 164 1848-2041 75-250 (391)
20 TIGR03866 PQQ_ABC_repeats PQQ- 92.7 10 0.00022 42.3 19.1 191 1814-2038 78-278 (300)
21 PTZ00421 coronin; Provisional 92.5 43 0.00092 43.4 28.1 153 1873-2038 37-197 (493)
22 KOG0289 mRNA splicing factor [ 91.4 4.3 9.3E-05 51.2 15.4 136 1855-1999 295-431 (506)
23 PF10214 Rrn6: RNA polymerase 91.1 8.4 0.00018 51.8 19.1 172 1805-1988 77-277 (765)
24 KOG0294 WD40 repeat-containing 90.8 3.8 8.3E-05 50.1 14.0 170 1798-1999 121-293 (362)
25 PF04762 IKI3: IKI3 family; I 90.6 28 0.00062 48.2 23.5 122 1862-1987 303-456 (928)
26 TIGR02658 TTQ_MADH_Hv methylam 90.3 59 0.0013 40.8 26.9 26 2016-2042 200-226 (352)
27 KOG1446 Histone H3 (Lys4) meth 89.2 10 0.00023 46.3 15.8 106 1926-2039 155-262 (311)
28 PF14727 PHTB1_N: PTHB1 N-term 88.8 48 0.0011 42.4 21.9 261 1866-2143 27-317 (418)
29 KOG0310 Conserved WD40 repeat- 87.9 21 0.00045 45.9 17.7 193 1819-2037 79-307 (487)
30 PF08662 eIF2A: Eukaryotic tra 87.8 25 0.00054 39.8 17.0 138 1868-2029 10-163 (194)
31 PF10282 Lactonase: Lactonase, 87.7 75 0.0016 38.6 22.3 225 1812-2049 90-332 (345)
32 TIGR03866 PQQ_ABC_repeats PQQ- 87.1 56 0.0012 36.5 28.1 148 1867-2038 34-186 (300)
33 KOG2110 Uncharacterized conser 86.5 12 0.00025 46.9 14.2 149 1826-2001 151-343 (391)
34 KOG4460 Nuclear pore complex, 86.3 2.6 5.6E-05 54.0 8.9 87 1857-1944 97-202 (741)
35 PTZ00420 coronin; Provisional 85.8 31 0.00067 45.5 18.5 195 1819-2039 87-293 (568)
36 PF15492 Nbas_N: Neuroblastoma 85.8 69 0.0015 39.3 19.7 237 1875-2142 8-257 (282)
37 KOG4378 Nuclear protein COP1 [ 85.6 24 0.00051 45.7 16.4 243 1823-2123 7-254 (673)
38 PTZ00420 coronin; Provisional 85.4 1.4E+02 0.0031 39.7 27.3 116 1910-2038 74-196 (568)
39 KOG0650 WD40 repeat nucleolar 84.8 22 0.00047 46.8 15.9 261 1810-2144 402-680 (733)
40 PF04053 Coatomer_WDAD: Coatom 84.3 20 0.00044 45.8 15.6 148 1859-2040 104-263 (443)
41 KOG0650 WD40 repeat nucleolar 84.1 9.1 0.0002 50.0 12.3 148 1866-2036 524-677 (733)
42 PF11715 Nup160: Nucleoporin N 82.8 4.2 9E-05 51.8 8.9 102 1939-2040 65-177 (547)
43 KOG0264 Nucleosome remodeling 78.8 11 0.00023 47.8 10.2 140 1823-1987 245-404 (422)
44 KOG0286 G-protein beta subunit 78.4 1.4E+02 0.0031 37.2 18.6 181 1826-2035 75-299 (343)
45 PF08596 Lgl_C: Lethal giant l 78.2 49 0.0011 41.8 15.7 171 1811-1987 89-290 (395)
46 PF00643 zf-B_box: B-box zinc 77.4 1.9 4.1E-05 37.4 2.5 28 1604-1635 14-41 (42)
47 KOG0279 G protein beta subunit 76.7 66 0.0014 39.6 15.3 90 1865-1962 107-200 (315)
48 KOG0269 WD40 repeat-containing 75.0 14 0.00031 49.4 10.1 144 1822-1987 193-340 (839)
49 PF08662 eIF2A: Eukaryotic tra 72.9 33 0.00073 38.8 11.4 98 1866-1976 62-163 (194)
50 KOG1274 WD40 repeat protein [G 72.2 23 0.00051 48.2 11.2 118 1863-1987 138-262 (933)
51 KOG1445 Tumor-specific antigen 68.5 67 0.0015 42.8 13.6 154 1818-1987 590-750 (1012)
52 KOG0315 G-protein beta subunit 66.9 24 0.00051 42.7 8.8 75 1910-1988 40-114 (311)
53 PF03178 CPSF_A: CPSF A subuni 64.0 1.1E+02 0.0024 36.6 13.7 149 1819-1987 98-267 (321)
54 KOG2055 WD40 repeat protein [G 63.5 1.7E+02 0.0036 38.3 15.4 158 1866-2041 216-376 (514)
55 KOG0293 WD40 repeat-containing 62.9 63 0.0014 41.4 11.6 155 1864-2038 270-424 (519)
56 KOG4378 Nuclear protein COP1 [ 62.1 48 0.001 43.1 10.6 119 1804-1988 161-281 (673)
57 PRK01742 tolB translocation pr 61.9 4.2E+02 0.0091 33.5 18.8 108 1865-1981 205-316 (429)
58 PF04841 Vps16_N: Vps16, N-ter 61.7 29 0.00063 43.7 8.8 86 1888-1984 62-152 (410)
59 KOG1587 Cytoplasmic dynein int 61.4 33 0.00072 45.2 9.5 115 1864-1987 399-516 (555)
60 PF04053 Coatomer_WDAD: Coatom 60.3 71 0.0015 41.1 11.9 37 1852-1891 23-59 (443)
61 KOG1539 WD repeat protein [Gen 57.4 7.4E+02 0.016 34.9 23.1 196 1849-2100 63-271 (910)
62 KOG0266 WD40 repeat-containing 57.2 5.3E+02 0.011 33.1 24.2 241 1869-2143 165-408 (456)
63 KOG0277 Peroxisomal targeting 56.8 38 0.00083 41.2 8.1 93 1864-1960 9-110 (311)
64 smart00336 BBOX B-Box-type zin 55.5 7.7 0.00017 33.1 1.8 30 1602-1635 12-41 (42)
65 PF00780 CNH: CNH domain; Int 55.3 3.9E+02 0.0084 31.0 24.6 142 1816-1982 4-161 (275)
66 PF08596 Lgl_C: Lethal giant l 51.8 4.3E+02 0.0093 33.9 16.5 157 1865-2040 3-174 (395)
67 KOG0289 mRNA splicing factor [ 51.7 1.5E+02 0.0034 38.4 12.4 141 1808-1983 313-458 (506)
68 KOG1897 Damage-specific DNA bi 51.1 9.8E+02 0.021 34.4 22.5 110 1866-1990 409-520 (1096)
69 KOG0266 WD40 repeat-containing 50.4 6.7E+02 0.014 32.3 24.5 162 1860-2038 200-363 (456)
70 KOG0290 Conserved WD40 repeat- 50.3 44 0.00096 41.2 7.4 117 1819-1951 209-333 (364)
71 cd00021 BBOX B-Box-type zinc f 50.2 11 0.00023 31.9 1.8 29 1603-1635 10-38 (39)
72 PF02239 Cytochrom_D1: Cytochr 50.2 6.3E+02 0.014 31.9 18.0 132 1825-1987 13-158 (369)
73 PF00780 CNH: CNH domain; Int 49.8 4.7E+02 0.01 30.3 15.5 132 1810-1948 38-173 (275)
74 KOG0315 G-protein beta subunit 47.2 6.6E+02 0.014 31.3 18.1 198 1813-2041 45-247 (311)
75 PF04841 Vps16_N: Vps16, N-ter 46.8 7.4E+02 0.016 31.7 18.0 48 1933-1987 62-109 (410)
76 KOG2048 WD40 repeat protein [G 46.3 9.8E+02 0.021 33.0 21.5 200 1818-2037 393-599 (691)
77 KOG0264 Nucleosome remodeling 45.6 2.8E+02 0.0061 36.0 13.4 156 1819-1991 190-351 (422)
78 KOG1063 RNA polymerase II elon 45.4 1.3E+02 0.0027 40.8 10.7 153 1814-1987 531-699 (764)
79 KOG0278 Serine/threonine kinas 45.3 3.9E+02 0.0084 33.1 13.7 89 1933-2036 123-211 (334)
80 PF04762 IKI3: IKI3 family; I 44.7 1.2E+03 0.025 33.4 24.6 117 1868-1987 261-379 (928)
81 PF06977 SdiA-regulated: SdiA- 43.6 6.8E+02 0.015 30.4 19.0 117 1860-2030 18-138 (248)
82 KOG1446 Histone H3 (Lys4) meth 43.4 7.2E+02 0.016 31.5 15.9 160 1810-1986 142-303 (311)
83 KOG0647 mRNA export protein (c 42.3 7.3E+02 0.016 31.6 15.6 87 1865-1954 29-157 (347)
84 KOG1140 N-end rule pathway, re 41.5 14 0.0003 53.3 1.9 65 1588-1657 13-80 (1738)
85 KOG0279 G protein beta subunit 40.3 2.1E+02 0.0045 35.6 10.8 114 1810-1941 194-314 (315)
86 PF14761 HPS3_N: Hermansky-Pud 40.2 66 0.0014 38.2 6.6 74 1813-1893 140-214 (215)
87 KOG0276 Vesicle coat complex C 40.0 5.3E+02 0.011 35.2 14.8 224 1866-2143 143-379 (794)
88 KOG4532 WD40-like repeat conta 39.8 5.5E+02 0.012 32.2 13.9 112 1866-1985 161-278 (344)
89 KOG0269 WD40 repeat-containing 39.8 1.3E+03 0.027 32.6 18.3 128 1852-1987 76-207 (839)
90 KOG0307 Vesicle coat complex C 38.7 71 0.0015 44.7 7.5 195 1820-2039 81-284 (1049)
91 KOG0772 Uncharacterized conser 38.2 1.1E+03 0.024 31.8 17.0 258 1866-2165 217-508 (641)
92 COG2319 FOG: WD40 repeat [Gene 36.2 4.9E+02 0.011 29.0 12.1 113 1864-1984 110-226 (466)
93 PRK02889 tolB translocation pr 36.0 1E+03 0.022 30.2 17.0 175 1866-2068 242-423 (427)
94 KOG1240 Protein kinase contain 35.2 7E+02 0.015 36.5 15.4 148 1825-1987 1068-1225(1431)
95 PF11768 DUF3312: Protein of u 35.1 1.3E+03 0.029 31.3 18.7 63 2082-2145 202-290 (545)
96 KOG0293 WD40 repeat-containing 35.1 1.2E+03 0.026 30.8 17.1 113 1865-1987 226-342 (519)
97 KOG2041 WD40 repeat protein [G 33.7 1.7E+02 0.0037 39.8 9.3 98 1818-1937 228-334 (1189)
98 PF12657 TFIIIC_delta: Transcr 33.7 1.7E+02 0.0036 32.8 8.2 108 1811-1942 7-123 (173)
99 PRK04922 tolB translocation pr 33.4 1.1E+03 0.024 29.9 21.1 112 1865-1987 205-324 (433)
100 KOG3339 Predicted glycosyltran 33.0 55 0.0012 38.4 4.4 108 289-398 51-173 (211)
101 KOG1332 Vesicle coat complex C 32.8 3.9E+02 0.0084 33.0 11.3 162 1866-2037 105-284 (299)
102 KOG0268 Sof1-like rRNA process 29.5 3.3E+02 0.0071 35.0 10.3 160 1855-2033 178-339 (433)
103 PRK03629 tolB translocation pr 29.4 1.3E+03 0.028 29.4 21.3 155 1865-2042 200-364 (429)
104 KOG2096 WD40 repeat protein [G 28.7 3.4E+02 0.0073 34.5 10.1 147 1814-1982 193-346 (420)
105 KOG1240 Protein kinase contain 28.3 3.8E+02 0.0082 38.9 11.4 135 1892-2035 1034-1177(1431)
106 KOG1274 WD40 repeat protein [G 28.3 5.8E+02 0.013 36.0 12.9 118 1814-1941 144-263 (933)
107 KOG0641 WD40 repeat protein [G 28.1 6.1E+02 0.013 31.0 11.7 75 1912-1987 91-171 (350)
108 PF10168 Nup88: Nuclear pore c 27.5 1.8E+02 0.0038 39.9 8.3 34 2111-2144 146-179 (717)
109 KOG3881 Uncharacterized conser 27.5 4E+02 0.0087 34.5 10.6 103 1877-1987 173-277 (412)
110 PF06977 SdiA-regulated: SdiA- 27.2 3.2E+02 0.007 33.0 9.6 71 1817-1894 73-148 (248)
111 KOG0321 WD40 repeat-containing 27.2 7.7E+02 0.017 33.8 13.3 110 1868-1979 54-178 (720)
112 KOG0973 Histone transcription 26.9 8.6E+02 0.019 34.8 14.3 118 1862-1986 128-261 (942)
113 TIGR01171 rplB_bact ribosomal 26.5 1.3E+03 0.029 28.7 14.6 130 1850-1984 61-212 (273)
114 KOG0307 Vesicle coat complex C 26.3 62 0.0013 45.2 4.0 71 1866-1941 256-328 (1049)
115 PF06433 Me-amine-dh_H: Methyl 26.3 8.3E+02 0.018 31.3 13.0 93 1932-2042 118-216 (342)
116 PF00400 WD40: WD domain, G-be 25.4 1.4E+02 0.0029 24.7 4.5 28 1910-1938 11-39 (39)
117 PRK03629 tolB translocation pr 24.9 9.8E+02 0.021 30.5 13.7 151 1868-2039 247-404 (429)
118 KOG1900 Nuclear pore complex, 24.4 1.4E+03 0.031 33.8 15.8 192 1818-2027 89-328 (1311)
119 KOG2445 Nuclear pore complex c 24.4 2.5E+02 0.0054 35.4 8.0 85 1856-1941 164-257 (361)
120 KOG1007 WD repeat protein TSSC 24.4 1.6E+03 0.034 28.8 15.1 231 1785-2036 40-286 (370)
121 CHL00052 rpl2 ribosomal protei 23.9 1.4E+03 0.029 28.7 13.9 130 1850-1984 61-212 (273)
122 KOG0642 Cell-cycle nuclear pro 23.2 8.7E+02 0.019 32.8 12.7 118 1913-2036 296-423 (577)
123 KOG1273 WD40 repeat protein [G 23.1 1.4E+03 0.031 29.4 13.8 188 1797-2012 14-208 (405)
124 KOG0319 WD40-repeat-containing 22.4 2.3E+03 0.05 30.1 18.8 160 1805-1987 104-268 (775)
125 KOG0296 Angio-associated migra 22.3 8.2E+02 0.018 31.7 11.8 141 1879-2053 247-396 (399)
126 KOG1407 WD40 repeat protein [F 21.9 4.3E+02 0.0093 32.9 9.2 143 1818-1987 117-261 (313)
127 KOG0639 Transducin-like enhanc 21.6 6.3E+02 0.014 33.8 10.9 159 1877-2038 432-621 (705)
128 KOG1587 Cytoplasmic dynein int 20.6 1.1E+03 0.023 32.0 13.2 162 1867-2041 351-518 (555)
129 KOG3334 Transcription initiati 20.3 76 0.0017 35.8 2.6 50 92-144 14-77 (148)
130 PF09826 Beta_propel: Beta pro 20.2 5.7E+02 0.012 34.0 10.6 108 1824-1940 398-518 (521)
No 1
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=99.42 E-value=4.5e-14 Score=161.86 Aligned_cols=102 Identities=26% Similarity=0.573 Sum_probs=81.2
Q ss_pred CCCCCCcchhhcccCCCcceeccCCccc-ccceEeeccCCCCC-CceeehhhhhhhcCCCcEEEE-eecceeeecCCCCC
Q 047869 1574 KDEEDDPNSERALASKVCTFTSSGSNFM-EQHWYFCYTCDLTV-SKGCCSVCAKVCHRGHRVVYS-RSSRFFCDCGAGGV 1650 (2233)
Q Consensus 1574 ~~~~~~~~~e~al~~~~CTFt~TG~~fi-~Q~~Y~C~TC~l~~-~~GVC~aCA~vCHkGHdVvyl-~k~~FfCDCGa~~~ 1650 (2233)
+.++..+-+..+.+.+.|||. ++|+ ||.+|.|+||.+.. ..|||++|+..||.||+++++ ++|+|+||||+.++
T Consensus 26 ~lE~~a~~vL~~~~~~~CTy~---~Gy~~rQ~l~sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~ 102 (345)
T KOG2752|consen 26 ELEDEADVVLGTQNPDVCTYA---KGYKKRQALFSCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKF 102 (345)
T ss_pred HHHHHHHhhcCCCCCcccccc---cCcccccceeEeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccc
Confidence 333445556667788999999 5566 89999999999975 789999999999999999999 99999999999998
Q ss_pred CCCCceeCCCCCCCCCCCccccccCcccccC
Q 047869 1651 RGSSCQCLKPRKYTGSDSASSRAASNFQSFL 1681 (2233)
Q Consensus 1651 ~~~~Cqclk~r~~~~~~~as~r~s~nf~~~~ 1681 (2233)
...+|.++...... ...+.+++||++.+
T Consensus 103 g~~sc~l~~~~~~~---n~~N~YNhNfqG~~ 130 (345)
T KOG2752|consen 103 GRCSCNLLEDKDAE---NSENLYNHNFQGLF 130 (345)
T ss_pred cccccccccccccc---cchhhhhhhhccee
Confidence 77667665432111 33567889999876
No 2
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=99.36 E-value=3.2e-13 Score=159.09 Aligned_cols=86 Identities=34% Similarity=0.743 Sum_probs=77.0
Q ss_pred CCCCCCCcchhhcccCCCcceeccCCc-ccccceEeeccCCCCCCceeehhhhhhhcCCCcEEEEeecceeeecCCCCCC
Q 047869 1573 DKDEEDDPNSERALASKVCTFTSSGSN-FMEQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVR 1651 (2233)
Q Consensus 1573 d~~~~~~~~~e~al~~~~CTFt~TG~~-fi~Q~~Y~C~TC~l~~~~GVC~aCA~vCHkGHdVvyl~k~~FfCDCGa~~~~ 1651 (2233)
++.-++.|.+|+|+..+.|.|.+++.. |+++.+|.|.||+.++..+||..|.+.||+||+|.+++..+||||||++..
T Consensus 528 N~iydN~D~vekAik~GqCLfkvSs~~syPMHnFYRC~TCNttdRNAIC~nCI~~CH~GH~Vefir~Drffcdcgagtl- 606 (625)
T KOG1777|consen 528 NQIYDNLDHVEKAIKKGQCLFKVSSYTSYPMHNFYRCITCNTTDRNAICVNCIKRCHEGHDVEFIRHDRFFCDCGAGTL- 606 (625)
T ss_pred cccccchHHHHHHhhcCceEEEecCCCcccccceeEeeecCCccccHHHHHHHHHhcCCCceEEEeeceEEEecCCcee-
Confidence 455567889999999999999977666 669999999999999999999999999999999999999999999999876
Q ss_pred CCCceeCC
Q 047869 1652 GSSCQCLK 1659 (2233)
Q Consensus 1652 ~~~Cqclk 1659 (2233)
...|++..
T Consensus 607 ~~~c~lq~ 614 (625)
T KOG1777|consen 607 SNVCDLQG 614 (625)
T ss_pred cceeeccC
Confidence 45588754
No 3
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.6e-12 Score=160.13 Aligned_cols=71 Identities=37% Similarity=0.829 Sum_probs=63.1
Q ss_pred cCCCcceeccCCcccccceEeeccCCCCCCceeehhhhhhhcCCCcEEEEeec-ceeeecCCCCCCCCCceeCC
Q 047869 1587 ASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYSRSS-RFFCDCGAGGVRGSSCQCLK 1659 (2233)
Q Consensus 1587 ~~~~CTFt~TG~~fi~Q~~Y~C~TC~l~~~~GVC~aCA~vCHkGHdVvyl~k~-~FfCDCGa~~~~~~~Cqclk 1659 (2233)
.+..|+|++||.++++|+.|.|.||++.++.+||+.||.+||+|||....+.+ ..||||+.+. .++|+.+.
T Consensus 1239 ~NDtCSFTWTGadHINQDIfECkTCGL~~SLCCCsECAltCHk~HDCkLKRTSPTAYCDCWEKs--sCkCKaLI 1310 (3015)
T KOG0943|consen 1239 CNDTCSFTWTGADHINQDIFECKTCGLLESLCCCSECALTCHKGHDCKLKRTSPTAYCDCWEKS--SCKCKALI 1310 (3015)
T ss_pred ecCccceeecchhhccchhhhhcccccchhhhhhHHHHHHhccCCccceeccCCcceeehhhcc--cccchhhh
Confidence 68899999999999999999999999999999999999999999999999655 6999999853 45555543
No 4
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=99.21 E-value=7.3e-12 Score=118.59 Aligned_cols=58 Identities=50% Similarity=0.973 Sum_probs=44.0
Q ss_pred CCcceeccCCcccccceEeeccCCCCCCceeehhh-hhhhcCCCcEEEEeec-ceeeecCCCCC
Q 047869 1589 KVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVC-AKVCHRGHRVVYSRSS-RFFCDCGAGGV 1650 (2233)
Q Consensus 1589 ~~CTFt~TG~~fi~Q~~Y~C~TC~l~~~~GVC~aC-A~vCHkGHdVvyl~k~-~FfCDCGa~~~ 1650 (2233)
+.|++.++.+ |.+|.|+||.+++..++|..| ++.||+||++++.+.. +|+||||+...
T Consensus 1 ~~C~~~~~~~----q~~y~C~tC~~~~~~~iC~~CF~~~~H~gH~~~~~~~~~~~~CDCG~~~~ 60 (71)
T PF02207_consen 1 KKCTYVWTSG----QIFYRCLTCSLDESSGICEECFANSCHEGHRVVYYRSSSGGCCDCGDPEA 60 (71)
T ss_dssp -SS--B--TT-----EEEEETTTBSSTT-BBEHHHHCTSGGGGSSEEEEE--SCEBB-TT-GGG
T ss_pred CcCCCCCcCC----CEEEECccCCCCCCEEEchhhCCCCCcCCCcEEEEEeCCCeEEeCCCCcc
Confidence 4799987755 999999999999999999999 9999999999999877 99999998765
No 5
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=98.99 E-value=4.8e-10 Score=106.96 Aligned_cols=64 Identities=34% Similarity=0.770 Sum_probs=54.9
Q ss_pred CCcceeccCCcccccceEeeccCCCCCCceeehhhhh-hhcCCCcEEEEeecc-eeeecCCCCC--CCCCce
Q 047869 1589 KVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAK-VCHRGHRVVYSRSSR-FFCDCGAGGV--RGSSCQ 1656 (2233)
Q Consensus 1589 ~~CTFt~TG~~fi~Q~~Y~C~TC~l~~~~GVC~aCA~-vCHkGHdVvyl~k~~-FfCDCGa~~~--~~~~Cq 1656 (2233)
..|+|..+.++.+ |.|+||.+.+..++|..|++ .||+||++.+.+.++ |+||||+... +++.|+
T Consensus 1 ~~C~~~~~~~~~~----y~C~tC~~~~~~~iC~~Cf~~~~H~gH~~~~~~~~~~~~CDCG~~~~~~~~~~C~ 68 (71)
T smart00396 1 DVCTYKFTGGEVI----YRCKTCGLDPTCVLCSDCFRSNCHKGHDYSLKTSRGSGICDCGDKEAWNEDLKCK 68 (71)
T ss_pred CCCCCccCCCCEE----EECcCCCCCCCEeEChHHCCCCCCCCCCEEEEEecCCEEECCCChhccCCCcccc
Confidence 3699998877655 99999999999999999999 999999999998888 9999999742 445554
No 6
>KOG1776 consensus Zn-binding protein Push [Signal transduction mechanisms]
Probab=98.97 E-value=2.3e-11 Score=148.34 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=57.4
Q ss_pred CCCcceeccCCcccccceEeeccCCCCCCc-eeehhhhhhhcCCCcEEEEeecceeeecCCCCC
Q 047869 1588 SKVCTFTSSGSNFMEQHWYFCYTCDLTVSK-GCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGV 1650 (2233)
Q Consensus 1588 ~~~CTFt~TG~~fi~Q~~Y~C~TC~l~~~~-GVC~aCA~vCHkGHdVvyl~k~~FfCDCGa~~~ 1650 (2233)
-..|||.++|+-++-|+||.|+||+|..+. |+|.+||++||+||++-|. ++.|+||||.+..
T Consensus 764 v~~~T~Kkk~q~~m~n~~~q~~k~~M~~~~gG~~kV~s~t~H~~~~i~~S-~~~~~C~C~Es~~ 826 (1110)
T KOG1776|consen 764 VRDETEKKKKQMAMLNREKQLTKMRMKVGTGGQIKVSSRTLHNEPSIDDS-DSLPCCICRESVI 826 (1110)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhheeeeccCceEEEeeecccCCCCcccc-CCCceeecccccc
Confidence 456999999999999999999999998776 8999999999999999999 9999999998764
No 7
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.90 E-value=0.00077 Score=87.69 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=136.7
Q ss_pred ccccceecccCceEEEe--eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccc
Q 047869 1809 LVKSLLSVSSRGRLAVG--EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYED 1886 (2233)
Q Consensus 1809 ~iRqLLSas~rGrLAVa--EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkD 1886 (2233)
..|+++.+.. |+|.|- +...+..+++..+...++.. .+. ---+-+-++++.|+|-+|..|| ++.+||++|-+.
T Consensus 32 ~~rNLl~~~d-~~L~vWd~~e~~l~~~nlr~~~~~~~~~--~~~-~~q~L~~~~~~~f~v~~i~~n~-~g~~lal~G~~~ 106 (717)
T PF10168_consen 32 HTRNLLACRD-GDLFVWDSSECCLLTVNLRSLESDAEGP--AKS-SYQKLLPSNPPLFEVHQISLNP-TGSLLALVGPRG 106 (717)
T ss_pred cceeeEEEeC-CEEEEEECCCCEEEEEeeccccccccCc--ccc-CcceeecCCCCceeEEEEEECC-CCCEEEEEcCCc
Confidence 4588888885 787764 55556666777776554421 111 1112234567889999999999 999999999999
Q ss_pred eEEEEec----CCCceee-------e-eeeeecc----CCceEEEeEEecCC--CceEEEEecC-eEEEEeCcCCCCCCc
Q 047869 1887 CQVLTLN----PRGEVTD-------R-LAIELAL----QGAYIRRVDWVPGS--PVQLMVVTNK-FVKIYDLSQDNISPL 1947 (2233)
Q Consensus 1887 C~VLTfs----s~GeV~D-------R-L~LeL~L----eg~fIIKa~WLPGS--Qt~LAVVT~~-FVKIYDLS~D~lSPv 1947 (2233)
+.|+-+= ++|...| | ..|.-.+ .+.-|.+|.|=|+| .+-|+|-|++ -+++||++ +.-.|.
T Consensus 107 v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~-~~~~p~ 185 (717)
T PF10168_consen 107 VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS-DPQHPW 185 (717)
T ss_pred EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC-CCCCCe
Confidence 9999983 3443322 1 1222222 25689999999997 4667777776 89999997 666776
Q ss_pred EEEEcCCCC-------------------eeEEEEEEec--C--------C----cEEEEEEecCCceEEEEeccc---CC
Q 047869 1948 HYFTLPDDM-------------------IVDATLVIAS--R--------G----KMFLIVLSECGSLYRLELSVE---GN 1991 (2233)
Q Consensus 1948 yyF~LpsGk-------------------IrDaTfv~~e--~--------G----~~~ILVLSS~G~LY~Qels~s---~d 1991 (2233)
-.+.+.++. =.|+.|.... . + ..-|+|+-..|.+|+--.+.. .+
T Consensus 186 ~v~~~~~~~~~~~~~~~~~~~~~slge~AV~FDfgP~~~~~~~~~~~~~~~~~~~~p~~vL~~ng~v~~~~~~l~~~~~~ 265 (717)
T PF10168_consen 186 QVLSLSPGEKSSSLSSRGRSFLASLGETAVDFDFGPLDTSPKTLTGQKSKQEKIEWPIFVLRENGDVYLLYTSLQDENSN 265 (717)
T ss_pred EEEEcccCcccccccCCCccccccchheeeecccccccccccccccccCCCCceeccEEEEecCCCEEEEEEecccCccc
Confidence 666654211 1333443311 1 1 235899999999998655541 11
Q ss_pred ----Cccccceeeeecccccc-cCCeEEEEeccc-cceeeEEecCCcEEEE
Q 047869 1992 ----VGATPLKEIIQFNDREI-HAKGLSLYFSST-YKLLFLSFQDGTTLVG 2036 (2233)
Q Consensus 1992 ----~g~~~ltEvvq~~~~q~-~~~GVSVyYS~t-l~LLF~SY~~G~Sf~a 2036 (2233)
.|+..|. .+..++ +..+=||.+-++ =.+|.+++++|+-+=|
T Consensus 266 ~~~~~gpl~~~----p~~~dnyg~d~c~i~~l~~~p~~~via~~~G~l~h~ 312 (717)
T PF10168_consen 266 LPKLQGPLPMQ----PPADDNYGLDACSILCLPSLPPVLVIATSNGKLYHC 312 (717)
T ss_pred cceecCceecC----CCCcccCCCceeeEEEecCCCCEEEEEecCCeEEEE
Confidence 1222222 222222 334555555444 3788999999999943
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.71 E-value=0.068 Score=56.04 Aligned_cols=185 Identities=19% Similarity=0.181 Sum_probs=107.9
Q ss_pred cCceEEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecc-cceEEEEecCC
Q 047869 1818 SRGRLAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGY-EDCQVLTLNPR 1895 (2233)
Q Consensus 1818 ~rGrLAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGL-kDC~VLTfss~ 1895 (2233)
.++.+|++ +.+.|.++++..--. ...+. .-...+..+.++|.. ++|+++|. ..+.|..+...
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGEL-------------LRTLK--GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCc-------------EEEEe--cCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcc
Confidence 34667765 688999998753110 00000 011234688888854 78888774 34444444322
Q ss_pred CceeeeeeeeeccCCceEEEeEEecCCCceEEEEe-cCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEE
Q 047869 1896 GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT-NKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIV 1974 (2233)
Q Consensus 1896 GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT-~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILV 1974 (2233)
+ ....+......|..+.|.|.. ..++..+ ...|+|||+.. ..+.+.+....+.|....+-. ++ .+++.
T Consensus 84 -~----~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~--~~-~~l~~ 152 (289)
T cd00200 84 -E----CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSP--DG-TFVAS 152 (289)
T ss_pred -c----ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcC--cC-CEEEE
Confidence 1 122222334579999999984 3345555 56999999983 345566665566788777543 34 35555
Q ss_pred EecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEEEcC
Q 047869 1975 LSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLS 2039 (2233)
Q Consensus 1975 LSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls 2039 (2233)
.+.+|.++.-++..... ...++. ..+.-.++.+++.-+.+++...+|...+-.+.
T Consensus 153 ~~~~~~i~i~d~~~~~~------~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 153 SSQDGTIKLWDLRTGKC------VATLTG----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred EcCCCcEEEEEcccccc------ceeEec----CccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 55699999887762111 111111 11234467888887778887778777665553
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.62 E-value=0.057 Score=56.61 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=94.0
Q ss_pred EEEEeecccCccceEEeec-ccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEe-cCeEEEEeCcCC
Q 047869 1865 EIVHLAFNSIVENYLTVAG-YEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT-NKFVKIYDLSQD 1942 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcG-LkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT-~~FVKIYDLS~D 1942 (2233)
.|.++.++|. +++||+++ -..+.++.+.... . ..........|..+.|.|..+. |++++ ...|+|||+...
T Consensus 11 ~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~-~----~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 11 GVTCVAFSPD-GKLLATGSGDGTIKVWDLETGE-L----LRTLKGHTGPVRDVAASADGTY-LASGSSDKTIRLWDLETG 83 (289)
T ss_pred CEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCC-c----EEEEecCCcceeEEEECCCCCE-EEEEcCCCeEEEEEcCcc
Confidence 4778899885 67888877 4455666664332 1 1112223455789999999844 55555 669999999865
Q ss_pred CCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccc
Q 047869 1943 NISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYK 2022 (2233)
Q Consensus 1943 ~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~ 2022 (2233)
.+...|.-..+.|....+. +++ .+++..+.+|.++.-++.... ....++ . ..+.-.++.+++.-+
T Consensus 84 --~~~~~~~~~~~~i~~~~~~--~~~-~~~~~~~~~~~i~~~~~~~~~------~~~~~~--~--~~~~i~~~~~~~~~~ 148 (289)
T cd00200 84 --ECVRTLTGHTSYVSSVAFS--PDG-RILSSSSRDKTIKVWDVETGK------CLTTLR--G--HTDWVNSVAFSPDGT 148 (289)
T ss_pred --cceEEEeccCCcEEEEEEc--CCC-CEEEEecCCCeEEEEECCCcE------EEEEec--c--CCCcEEEEEEcCcCC
Confidence 3555666666678777754 333 344455559999988776211 001111 1 122345677888866
Q ss_pred eeeEEecCCcEEEEEcC
Q 047869 2023 LLFLSFQDGTTLVGRLS 2039 (2233)
Q Consensus 2023 LLF~SY~~G~Sf~a~Ls 2039 (2233)
+++.+..+|...+-.+.
T Consensus 149 ~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 149 FVASSSQDGTIKLWDLR 165 (289)
T ss_pred EEEEEcCCCcEEEEEcc
Confidence 66666668877776653
No 10
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.96 E-value=1.1 Score=59.36 Aligned_cols=156 Identities=16% Similarity=0.266 Sum_probs=94.8
Q ss_pred eecccCc-eEEE-eeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEE
Q 047869 1814 LSVSSRG-RLAV-GEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLT 1891 (2233)
Q Consensus 1814 LSas~rG-rLAV-aEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLT 1891 (2233)
++.+..| .+|. ++.++|-|+++........ ....|.....-...|..+++||..+++||.+|. |-.|.-
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~-Dg~v~l 559 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGR--------DIHYPVVELASRSKLSGICWNSYIKSQVASSNF-EGVVQV 559 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCccccccc--------ccccceEEecccCceeeEEeccCCCCEEEEEeC-CCeEEE
Confidence 3444444 4665 4889999999865432211 000111111113468899999998999988876 445555
Q ss_pred ecCC-CceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCc
Q 047869 1892 LNPR-GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGK 1969 (2233)
Q Consensus 1892 fss~-GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~ 1969 (2233)
++-. |...- .+.-....|..+.|-|.....|+....+ .|+|||+.... +...+.. .+.|..+.|. ..+|
T Consensus 560 Wd~~~~~~~~----~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~~v~~~-~~~g- 630 (793)
T PLN00181 560 WDVARSQLVT----EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKT-KANICCVQFP-SESG- 630 (793)
T ss_pred EECCCCeEEE----EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEec-CCCeEEEEEe-CCCC-
Confidence 5432 32221 2222356799999998666667766665 89999997543 3444443 2355555442 3445
Q ss_pred EEEEEEecCCceEEEEec
Q 047869 1970 MFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1970 ~~ILVLSS~G~LY~Qels 1987 (2233)
.++++-|.+|.||+-++.
T Consensus 631 ~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLR 648 (793)
T ss_pred CEEEEEeCCCeEEEEECC
Confidence 467788899999988876
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.95 E-value=0.61 Score=55.92 Aligned_cols=259 Identities=18% Similarity=0.270 Sum_probs=157.7
Q ss_pred eecc-cCceEEE-ee----CCeEEEEechhhhcccccCCccccccccccccccc-cceEEEEeecccCccceEEeeccc-
Q 047869 1814 LSVS-SRGRLAV-GE----GDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNI-VRFEIVHLAFNSIVENYLTVAGYE- 1885 (2233)
Q Consensus 1814 LSas-~rGrLAV-aE----gdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~-VpFeVlsLafNP~nEdyLAVcGLk- 1885 (2233)
|..+ .+++|++ .| .+.|+.+.+.. ++-+++.+++.+ .+-.-.+++.+| ++++|.|+-|.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~------------~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~ 108 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDP------------DTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGG 108 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEET------------TTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTT
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECC------------CcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccC
Confidence 4443 3455554 35 46887777632 223455555555 555666888988 78999998664
Q ss_pred -ceEEEEecCCCceeeeeeee-e-------c-cCCceEEEeEEecCCCceEE-EEecCeEEEEeCcCCC--CCCcEEEEc
Q 047869 1886 -DCQVLTLNPRGEVTDRLAIE-L-------A-LQGAYIRRVDWVPGSPVQLM-VVTNKFVKIYDLSQDN--ISPLHYFTL 1952 (2233)
Q Consensus 1886 -DC~VLTfss~GeV~DRL~Le-L-------~-Leg~fIIKa~WLPGSQt~LA-VVT~~FVKIYDLS~D~--lSPvyyF~L 1952 (2233)
...|+.++.+|.+.....+- . . .++.+.-.+.|-|..+..++ =.-++.|.+|++..+. +.|...+.+
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 56678999999998886431 1 1 23778888999998765332 1237899999999887 888889999
Q ss_pred CCCC-eeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeee-cccc-cccCCeEEEEeccccceeeEEec
Q 047869 1953 PDDM-IVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQ-FNDR-EIHAKGLSLYFSSTYKLLFLSFQ 2029 (2233)
Q Consensus 1953 psGk-IrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq-~~~~-q~~~~GVSVyYS~tl~LLF~SY~ 2029 (2233)
|.|. =|..+| .++|++.-++---.+.|...++.... +.......+. .|.. .....+--|..|++-+.||+|-.
T Consensus 189 ~~G~GPRh~~f--~pdg~~~Yv~~e~s~~v~v~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 189 PPGSGPRHLAF--SPDGKYAYVVNELSNTVSVFDYDPSD--GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp STTSSEEEEEE---TTSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccCCCCcEEEE--cCCcCEEEEecCCCCcEEEEeecccC--CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 9887 455554 46787666666667778877776322 2333333222 2221 11225777899999999999998
Q ss_pred CCcEEEE-EcCCCcccccceeEEEEccCCCCCCCcccceeeccCCCceEEEEeccCCCceEEEEecCCc
Q 047869 2030 DGTTLVG-RLSPNAASLSEVSYVFEEQDGKLRSAGLHRWKELLASSGLFFCFSSLKSNAAVAVSLGTNE 2097 (2233)
Q Consensus 2030 ~G~Sf~a-~Ls~~~~sv~eis~Vfe~~~gk~~~a~L~qWsEV~~hPGLf~cls~~~sn~pvvv~l~pd~ 2097 (2233)
...++.. .++..++.++.+..+-.. |+ .-+.-.+.+-|=+..++.+.+|...++.+.++.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~--G~------~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTG--GK------FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEES--SS------SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCC--CC------CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7665543 455555445444433221 11 112223344555555567788888887776544
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.61 E-value=1.7 Score=51.01 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=105.8
Q ss_pred eecccCc-eEEEe--eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccc--eE
Q 047869 1814 LSVSSRG-RLAVG--EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYED--CQ 1888 (2233)
Q Consensus 1814 LSas~rG-rLAVa--EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkD--C~ 1888 (2233)
+..+..| +|+++ ..+.|.++++.. + .+ ++.....+.+-...+|+++| ++++|.|+++.+ +.
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~-----~------g~--l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIAD-----D------GA--LTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVS 105 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECC-----C------Cc--eEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEE
Confidence 4555444 46664 467787787731 1 00 11111222222346899998 778888888744 45
Q ss_pred EEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEE-ecCeEEEEeCcCCC-CCC--cEEEEcCCCC-eeEEEEE
Q 047869 1889 VLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVV-TNKFVKIYDLSQDN-ISP--LHYFTLPDDM-IVDATLV 1963 (2233)
Q Consensus 1889 VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVV-T~~FVKIYDLS~D~-lSP--vyyF~LpsGk-IrDaTfv 1963 (2233)
|+-++.+|.+...+..-.. .....-+.+-|+.+..++.- -.+.|.|||+..+. +.| .....++.|. .+.++|
T Consensus 106 v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~- 182 (330)
T PRK11028 106 VSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF- 182 (330)
T ss_pred EEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE-
Confidence 6666666765443332111 12233455677765433211 23689999998642 332 2344455453 455543
Q ss_pred EecCCcEEEEEEecCCceEEEEecccCCCccccceeeee-cccc-cccCCeEEEEeccccceeeEEecC
Q 047869 1964 IASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQ-FNDR-EIHAKGLSLYFSSTYKLLFLSFQD 2030 (2233)
Q Consensus 1964 ~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq-~~~~-q~~~~GVSVyYS~tl~LLF~SY~~ 2030 (2233)
.++|++..++...+|.|..-++.... +...+...+. .|.. ....-+..|.++++-+.||++-..
T Consensus 183 -~pdg~~lyv~~~~~~~v~v~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 183 -HPNQQYAYCVNELNSSVDVWQLKDPH--GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred -CCCCCEEEEEecCCCEEEEEEEeCCC--CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 47776444444448999988886321 1222222221 1111 112224458899999999998543
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.33 E-value=3.3 Score=48.72 Aligned_cols=253 Identities=13% Similarity=0.157 Sum_probs=128.8
Q ss_pred EEeecccCccceEEeecccceEE--EEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEe--cCeEEEEeCcCC
Q 047869 1867 VHLAFNSIVENYLTVAGYEDCQV--LTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT--NKFVKIYDLSQD 1942 (2233)
Q Consensus 1867 lsLafNP~nEdyLAVcGLkDC~V--LTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT--~~FVKIYDLS~D 1942 (2233)
..|+++| +.++|+|.+..+-.| +.++.+|.+...-.+ ...+. .--+.+-|..+. |.++. ...|.+||+..|
T Consensus 38 ~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~-p~~i~~~~~g~~-l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 38 QPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGS-PTHISTDHQGRF-LFSASYNANCVSVSPLDKD 112 (330)
T ss_pred ccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCC-ceEEEECCCCCE-EEEEEcCCCeEEEEEECCC
Confidence 3678888 778998877755555 555656665422222 12222 223556666654 33333 468999999765
Q ss_pred CCC--CcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccc
Q 047869 1943 NIS--PLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSST 2020 (2233)
Q Consensus 1943 ~lS--PvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~t 2020 (2233)
... +...+.-.+ ..+.++ +.++|+...+.-..+|.|+.-++...+.- .......++.+.+ .+--.+.++++
T Consensus 113 g~~~~~~~~~~~~~-~~~~~~--~~p~g~~l~v~~~~~~~v~v~d~~~~g~l-~~~~~~~~~~~~g---~~p~~~~~~pd 185 (330)
T PRK11028 113 GIPVAPIQIIEGLE-GCHSAN--IDPDNRTLWVPCLKEDRIRLFTLSDDGHL-VAQEPAEVTTVEG---AGPRHMVFHPN 185 (330)
T ss_pred CCCCCceeeccCCC-cccEeE--eCCCCCEEEEeeCCCCEEEEEEECCCCcc-cccCCCceecCCC---CCCceEEECCC
Confidence 422 222221111 123333 36778766666666788998888632210 0001122233322 11224678899
Q ss_pred cceeeEEec-CCcEEEEEcCCCcccccceeEEEEccCCCCCCCccccee-eccCCC-c--eEEEEeccCCCceEEEEecC
Q 047869 2021 YKLLFLSFQ-DGTTLVGRLSPNAASLSEVSYVFEEQDGKLRSAGLHRWK-ELLASS-G--LFFCFSSLKSNAAVAVSLGT 2095 (2233)
Q Consensus 2021 l~LLF~SY~-~G~Sf~a~Ls~~~~sv~eis~Vfe~~~gk~~~a~L~qWs-EV~~hP-G--Lf~cls~~~sn~pvvv~l~p 2095 (2233)
-+.||++-. +|+..+-.++..++.++.+..+.... ..... .+|. ++.-+| | ++++ ...+|..-++.+..
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~~~~~--~~~~~~i~~~pdg~~lyv~--~~~~~~I~v~~i~~ 259 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP--ADFSD--TRWAADIHITPDGRHLYAC--DRTASLISVFSVSE 259 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC--CcCCC--CccceeEEECCCCCEEEEe--cCCCCeEEEEEEeC
Confidence 999999987 77777778865443333333221111 11111 1342 333233 3 4443 44566666666655
Q ss_pred Cce---eeeccccccCCCCCeEEEEEeecCCCCCeEEEE-EeeCCceeEEeccC
Q 047869 2096 NEL---IAQNMRHAAGSTSPLVGVTAYKPLSKDKVHCLV-LHDDGSLQIYSHVP 2145 (2233)
Q Consensus 2096 d~I---~iQeiK~~~~sSs~vdgva~y~p~s~~rttlLL-LcEDGSLrIYsa~P 2145 (2233)
+.- .++.+... ..+ .+++ ++.+-..+++ ...||++.+|...+
T Consensus 260 ~~~~~~~~~~~~~~--~~p--~~~~----~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 260 DGSVLSFEGHQPTE--TQP--RGFN----IDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCeEEEeEEEecc--ccC--CceE----ECCCCCEEEEEEccCCcEEEEEEcC
Confidence 442 33333321 111 1332 2334445544 44599999997543
No 14
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.09 E-value=1.5 Score=58.08 Aligned_cols=160 Identities=13% Similarity=0.160 Sum_probs=97.7
Q ss_pred ceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeee---eccC-CceEEEeEEecCCCceEEEEecC-eEEEE
Q 047869 1863 RFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIE---LALQ-GAYIRRVDWVPGSPVQLMVVTNK-FVKIY 1937 (2233)
Q Consensus 1863 pFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~Le---L~Le-g~fIIKa~WLPGSQt~LAVVT~~-FVKIY 1937 (2233)
...|.+++|+| ++++||.+|. |..|.-++.+..+.+...++ ..+. ..-|..+.|.|.....||....+ .|+||
T Consensus 483 ~~~V~~i~fs~-dg~~latgg~-D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 483 SNLVCAIGFDR-DGEFFATAGV-NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCcEEEEEECC-CCCEEEEEeC-CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 34478899998 7899999884 55555555433222211111 1112 33578899999766677766655 89999
Q ss_pred eCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEe
Q 047869 1938 DLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYF 2017 (2233)
Q Consensus 1938 DLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyY 2017 (2233)
|+.... ....+.--.+.|.++.|-. .+| .+++.-|.+|.+..-++...... ..++ . .....++.|
T Consensus 561 d~~~~~--~~~~~~~H~~~V~~l~~~p-~~~-~~L~Sgs~Dg~v~iWd~~~~~~~------~~~~--~---~~~v~~v~~ 625 (793)
T PLN00181 561 DVARSQ--LVTEMKEHEKRVWSIDYSS-ADP-TLLASGSDDGSVKLWSINQGVSI------GTIK--T---KANICCVQF 625 (793)
T ss_pred ECCCCe--EEEEecCCCCCEEEEEEcC-CCC-CEEEEEcCCCEEEEEECCCCcEE------EEEe--c---CCCeEEEEE
Confidence 997543 3444544567788777542 344 46778888999998888632111 1111 1 123445666
Q ss_pred -ccccceeeEEecCCcEEEEEcC
Q 047869 2018 -SSTYKLLFLSFQDGTTLVGRLS 2039 (2233)
Q Consensus 2018 -S~tl~LLF~SY~~G~Sf~a~Ls 2039 (2233)
++.-++|..+..+|+..+-.+.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECC
Confidence 3456677777777777766553
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.79 E-value=5.7 Score=52.75 Aligned_cols=150 Identities=16% Similarity=0.274 Sum_probs=96.4
Q ss_pred eecccCceE--EEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEE
Q 047869 1814 LSVSSRGRL--AVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLT 1891 (2233)
Q Consensus 1814 LSas~rGrL--AVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLT 1891 (2233)
|+.+..|++ ||-|+|..-+..+- ..... ...++ .-.|-.|.|+| |+.++||+==+..+|..
T Consensus 61 ialSp~g~lllavdE~g~~~lvs~~-----~r~Vl---h~f~f--------k~~v~~i~fSP-ng~~fav~~gn~lqiw~ 123 (893)
T KOG0291|consen 61 IALSPDGTLLLAVDERGRALLVSLL-----SRSVL---HRFNF--------KRGVGAIKFSP-NGKFFAVGCGNLLQIWH 123 (893)
T ss_pred EEeCCCceEEEEEcCCCcEEEEecc-----cceee---EEEee--------cCccceEEECC-CCcEEEEEecceeEEEe
Confidence 566677765 45688887655541 11100 00111 12356899988 99999999999999998
Q ss_pred ecCCCceeeeee---eeeccCCce--EEEeEEecCCCceEEEEecC--eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEE
Q 047869 1892 LNPRGEVTDRLA---IELALQGAY--IRRVDWVPGSPVQLMVVTNK--FVKIYDLSQDNISPLHYFTLPDDMIVDATLVI 1964 (2233)
Q Consensus 1892 fss~GeV~DRL~---LeL~Leg~f--IIKa~WLPGSQt~LAVVT~~--FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~ 1964 (2233)
. -|++.+... ++=..-|-| |+-+.|...|.. -++|.+ .+|||+...-.---.|.+.=-.|.|..+-|..
T Consensus 124 ~--P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~--l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~ 199 (893)
T KOG0291|consen 124 A--PGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRL--LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA 199 (893)
T ss_pred c--CcchhcccCcceEeeeecCCccceeEEEeccCCce--EEeccccceEEEEEeccccccceEeccCCCcceEEEEecc
Confidence 7 234444221 121222555 999999999954 445444 89999987765544444444466777776665
Q ss_pred ecCCcEEEEEEecCCceEEEEec
Q 047869 1965 ASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1965 ~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
+ .+.++..|.+|+|++=...
T Consensus 200 ~---~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 200 N---SLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred C---cceEEEEecCceEEEEEec
Confidence 3 3669999999999976555
No 16
>PTZ00421 coronin; Provisional
Probab=95.19 E-value=2.6 Score=53.91 Aligned_cols=196 Identities=14% Similarity=0.153 Sum_probs=111.5
Q ss_pred CceEEEe-eCCeEEEEechhh-hcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecC-C
Q 047869 1819 RGRLAVG-EGDKVAIFDVGQL-IGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNP-R 1895 (2233)
Q Consensus 1819 rGrLAVa-EgdKVTILqlsaL-LkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss-~ 1895 (2233)
..+||.+ +.++|.|+++..- +..... ..+..+. .-.-.|..++|+|..+++||.+|. |..|..++- .
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~-------~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~-DgtVrIWDl~t 157 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNIS-------DPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGA-DMVVNVWDVER 157 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccC-------cceEEec--CCCCcEEEEEeCcCCCCEEEEEeC-CCEEEEEECCC
Confidence 3456654 8889999998431 000000 0011111 113457899999988889998886 444444442 3
Q ss_pred CceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEE
Q 047869 1896 GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIV 1974 (2233)
Q Consensus 1896 GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILV 1974 (2233)
|+... .+.-....|..+.|-|... .||....+ .|+|||+.... +++.+.-..|.+...+++. .++..++.+
T Consensus 158 g~~~~----~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~-~~~~~ivt~ 229 (493)
T PTZ00421 158 GKAVE----VIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWA-KRKDLIITL 229 (493)
T ss_pred CeEEE----EEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEc-CCCCeEEEE
Confidence 33222 2222356799999999754 46655554 99999997543 5666655555544444443 333333322
Q ss_pred E---ecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEe-cCCcEEEEEcCC
Q 047869 1975 L---SECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSF-QDGTTLVGRLSP 2040 (2233)
Q Consensus 1975 L---SS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY-~~G~Sf~a~Ls~ 2040 (2233)
- +++|.|..=++..... .... ...+....-...+|+++-++|++.- .+|...+-.+..
T Consensus 230 G~s~s~Dr~VklWDlr~~~~--p~~~------~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMAS--PYST------VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCC--ceeE------eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 2 3468888777763221 1111 1111223344568999999998875 478777766644
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=93.20 E-value=22 Score=46.09 Aligned_cols=262 Identities=21% Similarity=0.248 Sum_probs=140.9
Q ss_pred EEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCC
Q 047869 1865 EIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNI 1944 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~l 1944 (2233)
=|-.+-|||- +.+.|-+|-.-=-++-=+..|+.+-.+.=..+..| -|--+.|-|.|+..+-+-.-..+||||.+...+
T Consensus 192 FV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 192 FVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred ceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 3678999995 77777777654333333555655544433333332 244678999987655455555999999999955
Q ss_pred CCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCcccc---ceeeeecccccccCCeEEEEecccc
Q 047869 1945 SPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATP---LKEIIQFNDREIHAKGLSLYFSSTY 2021 (2233)
Q Consensus 1945 SPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~---ltEvvq~~~~q~~~~GVSVyYS~tl 2021 (2233)
.- +|.+.+ +|.|--+.+-+. +-+||..|-.|.|=+-+.+.-. ..... .+.+ ...-+..+| +--||-.+
T Consensus 270 v~--t~~~~~-~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~I---TaLtv~~d~-~~i~Sgsy 340 (603)
T KOG0318|consen 270 VS--TWPMGS-TVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSI---TALTVSPDG-KTIYSGSY 340 (603)
T ss_pred EE--EeecCC-chhceEEEEEEe-CCeEEEEEcCcEEEEecccCCC-hhheecccccce---eEEEEcCCC-CEEEeecc
Confidence 43 444443 477766655444 3478889999999877665211 10000 0000 011123334 56899999
Q ss_pred ceeeEEecCCcEEEEEcCCC--cccc-----cceeEEEEcc-CCCCCCCcc--cce-----eeccCCCceEEEEeccCCC
Q 047869 2022 KLLFLSFQDGTTLVGRLSPN--AASL-----SEVSYVFEEQ-DGKLRSAGL--HRW-----KELLASSGLFFCFSSLKSN 2086 (2233)
Q Consensus 2022 ~LLF~SY~~G~Sf~a~Ls~~--~~sv-----~eis~Vfe~~-~gk~~~a~L--~qW-----sEV~~hPGLf~cls~~~sn 2086 (2233)
.-++.+...|+=+..++-.. +.-+ .+-..+|... |...+.-++ .+. -++-.-|- -.|+.. .+
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~--d~ 417 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLS--DG 417 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEEcC--CC
Confidence 99999999888888777321 1001 1112222221 222222111 111 12222232 234222 44
Q ss_pred ceEEEEecCCceeeeccccccCCCCC--eEEEEEeecCCCCCeEEEEEeeCCceeEEecc
Q 047869 2087 AAVAVSLGTNELIAQNMRHAAGSTSP--LVGVTAYKPLSKDKVHCLVLHDDGSLQIYSHV 2144 (2233)
Q Consensus 2087 ~pvvv~l~pd~I~iQeiK~~~~sSs~--vdgva~y~p~s~~rttlLLLcEDGSLrIYsa~ 2144 (2233)
+..+|....+-.+.|..+-.....-. ..++|+ +.++....+=-+||-++||+-+
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv----~~~~~~vaVGG~Dgkvhvysl~ 473 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV----SPDGSEVAVGGQDGKVHVYSLS 473 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEE----cCCCCEEEEecccceEEEEEec
Confidence 44555555555555544432111100 112222 3477788888999999999843
No 18
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.89 E-value=0.63 Score=61.17 Aligned_cols=117 Identities=26% Similarity=0.450 Sum_probs=80.2
Q ss_pred EEEeecccCccceEE---------eecccceEEE------------EecCCCc--eee------------------eeee
Q 047869 1866 IVHLAFNSIVENYLT---------VAGYEDCQVL------------TLNPRGE--VTD------------------RLAI 1904 (2233)
Q Consensus 1866 VlsLafNP~nEdyLA---------VcGLkDC~VL------------Tfss~Ge--V~D------------------RL~L 1904 (2233)
|-.|+|||.+++|.+ .|.+-||+|. ++.|+|+ |+- ..+|
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 568999999999976 6888888875 4556663 222 1122
Q ss_pred eecc----CCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcC--CCCeeEEEEEEecCCcEEEEEEec
Q 047869 1905 ELAL----QGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLP--DDMIVDATLVIASRGKMFLIVLSE 1977 (2233)
Q Consensus 1905 eL~L----eg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~Lp--sGkIrDaTfv~~e~G~~~ILVLSS 1977 (2233)
.+.- .+--|.-.+-.|+...++.|+|+| .|+|||+-.-+ +++-|.=+ .+.-..|.|. .+|+ +||..|+
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~--lv~KfKG~~n~~SQ~~Asfs--~Dgk-~IVs~se 566 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD--LVHKFKGFRNTSSQISASFS--SDGK-HIVSASE 566 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh--hhhhhcccccCCcceeeeEc--cCCC-EEEEeec
Confidence 2221 133699999999999999999999 89999996544 33444422 2233455554 4785 7888889
Q ss_pred CCceEEEEec
Q 047869 1978 CGSLYRLELS 1987 (2233)
Q Consensus 1978 ~G~LY~Qels 1987 (2233)
+-++|+=.+.
T Consensus 567 Ds~VYiW~~~ 576 (712)
T KOG0283|consen 567 DSWVYIWKND 576 (712)
T ss_pred CceEEEEeCC
Confidence 9999976654
No 19
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.87 E-value=9.5 Score=47.57 Aligned_cols=164 Identities=19% Similarity=0.226 Sum_probs=105.4
Q ss_pred cccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCCceeee-----------eeeeeccCCceEEEe
Q 047869 1848 TADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDR-----------LAIELALQGAYIRRV 1916 (2233)
Q Consensus 1848 skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DR-----------L~LeL~Leg~fIIKa 1916 (2233)
.|+|.+++.+ --|-+|++|.. |.+.|+||=-++.+|+-|+. =...+- .++.+..++.|+
T Consensus 75 ~Kk~~~ICe~---~fpt~IL~Vrm---Nr~RLvV~Lee~IyIydI~~-MklLhTI~t~~~n~~gl~AlS~n~~n~yl--- 144 (391)
T KOG2110|consen 75 FKKKTTICEI---FFPTSILAVRM---NRKRLVVCLEESIYIYDIKD-MKLLHTIETTPPNPKGLCALSPNNANCYL--- 144 (391)
T ss_pred cccCceEEEE---ecCCceEEEEE---ccceEEEEEcccEEEEeccc-ceeehhhhccCCCccceEeeccCCCCceE---
Confidence 4777888776 46788999988 88999999988888887731 111111 233444445564
Q ss_pred EEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEE-EEecccCCCccc
Q 047869 1917 DWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYR-LELSVEGNVGAT 1995 (2233)
Q Consensus 1917 ~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~-Qels~s~d~g~~ 1995 (2233)
=.|+|++ .--|.|||+ +++.|+-++-.=.|.+.-.+| ..+|+ .|--.|+.|-|-+ ..++..+-.
T Consensus 145 -Ayp~s~t------~GdV~l~d~--~nl~~v~~I~aH~~~lAalaf--s~~G~-llATASeKGTVIRVf~v~~G~kl--- 209 (391)
T KOG2110|consen 145 -AYPGSTT------SGDVVLFDT--INLQPVNTINAHKGPLAALAF--SPDGT-LLATASEKGTVIRVFSVPEGQKL--- 209 (391)
T ss_pred -EecCCCC------CceEEEEEc--ccceeeeEEEecCCceeEEEE--CCCCC-EEEEeccCceEEEEEEcCCccEe---
Confidence 3578855 788999996 578899888888888876664 34553 3444455555442 222111000
Q ss_pred cceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEEEcCCC
Q 047869 1996 PLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSPN 2041 (2233)
Q Consensus 1996 ~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls~~ 2041 (2233)
.| .--+-....=.|+-||++-++|-+|=+.++..+.+|+..
T Consensus 210 --~e---FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 210 --YE---FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred --ee---eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 00 001111233567889999999999999999999888554
No 20
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.72 E-value=10 Score=42.26 Aligned_cols=191 Identities=13% Similarity=0.168 Sum_probs=101.7
Q ss_pred eecccCc-eEEEe--eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEE
Q 047869 1814 LSVSSRG-RLAVG--EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVL 1890 (2233)
Q Consensus 1814 LSas~rG-rLAVa--EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VL 1890 (2233)
+..+..| .+++. ..+.+.++++..- .. +...+.+..+.+++++| ++++++++.-..-.+.
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~---~~-------------~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETR---KV-------------LAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAH 140 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCC---eE-------------EeEeeCCCCcceEEECC-CCCEEEEEecCCCeEE
Confidence 3444444 46554 4568888887431 00 01111122345788888 7788888776532333
Q ss_pred EecCC-CceeeeeeeeeccCCceEEEeEEecCCCceEEEEe--cCeEEEEeCcCCCCCCcEEEEcC---CCCeeEEEEEE
Q 047869 1891 TLNPR-GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT--NKFVKIYDLSQDNISPLHYFTLP---DDMIVDATLVI 1964 (2233)
Q Consensus 1891 Tfss~-GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT--~~FVKIYDLS~D~lSPvyyF~Lp---sGkIrDaTfv~ 1964 (2233)
.++.+ |++...+. .+.-+..+.|-|..+. |++.+ ...|+|||+.....--.+.+..+ ++.+.-..+.+
T Consensus 141 ~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~-l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 141 FIDTKTYEIVDNVL-----VDQRPRFAEFTADGKE-LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred EEeCCCCeEEEEEE-----cCCCccEEEECCCCCE-EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE
Confidence 33332 33332221 1233456789888765 43433 56899999987654333333322 12222223445
Q ss_pred ecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEE-ecCCcEEEEEc
Q 047869 1965 ASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLS-FQDGTTLVGRL 2038 (2233)
Q Consensus 1965 ~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~S-Y~~G~Sf~a~L 2038 (2233)
.++|+...+....++.++.-++. .+ .. ...+. . .+.-.++.++++-+.|+++ ..+|+-.+-.+
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~-~~---~~--~~~~~--~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAK-TY---EV--LDYLL--V---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECC-CC---cE--EEEEE--e---CCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 67787655556667777765553 11 11 11111 1 1223467788988888875 45777655444
No 21
>PTZ00421 coronin; Provisional
Probab=92.51 E-value=43 Score=43.40 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=94.0
Q ss_pred cCccceEEee--cccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCC-----
Q 047869 1873 SIVENYLTVA--GYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNI----- 1944 (2233)
Q Consensus 1873 P~nEdyLAVc--GLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~l----- 1944 (2233)
-+|.+|+|+. +.-..-|+.++..|.+.+.. ..+.--...|..+.|-|.....||....+ .|+|||+.....
T Consensus 37 ~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~-~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~ 115 (493)
T PTZ00421 37 ACNDRFIAVPWQQLGSTAVLKHTDYGKLASNP-PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS 115 (493)
T ss_pred eECCceEEEEEecCCceEEeeccccccCCCCC-ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC
Confidence 3477888762 11123567777777654421 11111256799999999444457766665 899999986543
Q ss_pred CCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEecccccee
Q 047869 1945 SPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLL 2024 (2233)
Q Consensus 1945 SPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LL 2024 (2233)
.|...+.--.+.|..+.|- +.+..+++..+.+|.|.+-++..... .. ...+ -...-.++-++++-++|
T Consensus 116 ~~l~~L~gH~~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~------~~--~l~~--h~~~V~sla~spdG~lL 183 (493)
T PTZ00421 116 DPIVHLQGHTKKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKA------VE--VIKC--HSDQITSLEWNLDGSLL 183 (493)
T ss_pred cceEEecCCCCcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeE------EE--EEcC--CCCceEEEEEECCCCEE
Confidence 4666666667778777653 44445777778899999888863210 01 1111 11223467778877777
Q ss_pred eEEecCCcEEEEEc
Q 047869 2025 FLSFQDGTTLVGRL 2038 (2233)
Q Consensus 2025 F~SY~~G~Sf~a~L 2038 (2233)
..+-.+|+..+-.+
T Consensus 184 atgs~Dg~IrIwD~ 197 (493)
T PTZ00421 184 CTTSKDKKLNIIDP 197 (493)
T ss_pred EEecCCCEEEEEEC
Confidence 77777777666554
No 22
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.36 E-value=4.3 Score=51.21 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=95.5
Q ss_pred ccccccccceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-e
Q 047869 1855 KPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-F 1933 (2233)
Q Consensus 1855 trLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-F 1933 (2233)
.|.++.+..=.|..+.-+| +++||.-+..+.|..+.-=++|...=...-+ ..+-=+-.+..=|..-- ++.=|.+ -
T Consensus 295 ~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~v~~ts~~fHpDgLi-fgtgt~d~~ 370 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSDVEYTSAAFHPDGLI-FGTGTPDGV 370 (506)
T ss_pred Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec--cccceeEEeeEcCCceE-EeccCCCce
Confidence 4566666666777777666 8899999999999999988887654333332 11223455556666522 3444444 7
Q ss_pred EEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCcccccee
Q 047869 1934 VKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKE 1999 (2233)
Q Consensus 1934 VKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltE 1999 (2233)
||||||+.-+ -+-.|-.-+|.|+...|- ++| |++.+.+++|.+..=++++.-+...+.+.|
T Consensus 371 vkiwdlks~~--~~a~Fpght~~vk~i~Fs--ENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 371 VKIWDLKSQT--NVAKFPGHTGPVKAISFS--ENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred EEEEEcCCcc--ccccCCCCCCceeEEEec--cCc-eEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 9999998877 334565678999988864 777 999999999999999999776554444444
No 23
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.15 E-value=8.4 Score=51.78 Aligned_cols=172 Identities=16% Similarity=0.231 Sum_probs=105.9
Q ss_pred hcCcccccceec---c---cC-ceEEEeeCCeEEEEec--hhhhcccccCCccccccccccccccc----cceEEEEeec
Q 047869 1805 ASGSLVKSLLSV---S---SR-GRLAVGEGDKVAIFDV--GQLIGQATIQPVTADKTNVKPLSRNI----VRFEIVHLAF 1871 (2233)
Q Consensus 1805 ~sGq~iRqLLSa---s---~r-GrLAVaEgdKVTILql--saLLkQad~s~~skdKlTLtrLSsa~----VpFeVlsLaf 1871 (2233)
.-|.-|+|+--+ . .. +-|||.-.-+++|++. ...+.-.. ....++...|+..-+ -+|+...++|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~---~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIR---SRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEccccccccccc---CCccccccceeEEechhhcCCCccceEEe
Confidence 467788887665 2 22 4689999999999993 33311111 123445666665433 6899999999
Q ss_pred ccCccceEEee---cccceEEEEe-cCCCceeeeeeeeec----c--C---CceEEEeEEecCCCceEEEEecCeEEEEe
Q 047869 1872 NSIVENYLTVA---GYEDCQVLTL-NPRGEVTDRLAIELA----L--Q---GAYIRRVDWVPGSPVQLMVVTNKFVKIYD 1938 (2233)
Q Consensus 1872 NP~nEdyLAVc---GLkDC~VLTf-ss~GeV~DRL~LeL~----L--e---g~fIIKa~WLPGSQt~LAVVT~~FVKIYD 1938 (2233)
||++...+||+ |+.- |..+ .......+.+.+... + + -.-..++.|++.... |.|.+...+.+||
T Consensus 154 nP~~~~q~AiVD~~G~Ws--vw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~-lLv~~r~~l~~~d 230 (765)
T PF10214_consen 154 NPWDQRQFAIVDEKGNWS--VWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNR-LLVCNRSKLMLID 230 (765)
T ss_pred ccCccceEEEEeccCcEE--EEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCE-EEEEcCCceEEEE
Confidence 99999999985 4433 3333 000001111111110 0 1 122569999877654 7789999999999
Q ss_pred CcCCCCCCcEEEEcC---CCCeeEEEEEEecCCcEEEEEEecCCceEEEEecc
Q 047869 1939 LSQDNISPLHYFTLP---DDMIVDATLVIASRGKMFLIVLSECGSLYRLELSV 1988 (2233)
Q Consensus 1939 LS~D~lSPvyyF~Lp---sGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~ 1988 (2233)
+..+...+. ++. ...|+|+.-. .....+++|||+. .|+.-++..
T Consensus 231 ~~~~~~~~~---l~~~~~~~~IlDv~~~--~~~~~~~FiLTs~-eiiw~~~~~ 277 (765)
T PF10214_consen 231 FESNWQTEY---LVTAKTWSWILDVKRS--PDNPSHVFILTSK-EIIWLDVKS 277 (765)
T ss_pred CCCCCccch---hccCCChhheeeEEec--CCccceEEEEecC-eEEEEEccC
Confidence 997776554 333 3569998854 3344678888774 566555553
No 24
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.82 E-value=3.8 Score=50.07 Aligned_cols=170 Identities=20% Similarity=0.305 Sum_probs=108.5
Q ss_pred HHhHHHhhcCcccccceecccCceEEEe--eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCc
Q 047869 1798 RELKSHLASGSLVKSLLSVSSRGRLAVG--EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIV 1875 (2233)
Q Consensus 1798 relks~l~sGq~iRqLLSas~rGrLAVa--EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~n 1875 (2233)
.-+|+| .|| =.-|++++-|+||+. -.+++-.++|-. .+..-+++|+..+- .|.|.| .
T Consensus 121 ~slK~H--~~~--Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-----------Gr~a~v~~L~~~at-----~v~w~~-~ 179 (362)
T KOG0294|consen 121 KSLKAH--KGQ--VTDLSIHPSGKLALSVGGDQVLRTWNLVR-----------GRVAFVLNLKNKAT-----LVSWSP-Q 179 (362)
T ss_pred eeeccc--ccc--cceeEecCCCceEEEEcCCceeeeehhhc-----------CccceeeccCCcce-----eeEEcC-C
Confidence 344454 444 345889999998865 344555555522 22223333433221 266664 5
Q ss_pred cceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEe-cCeEEEEeCcCCCCCCcEEEEcCC
Q 047869 1876 ENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT-NKFVKIYDLSQDNISPLHYFTLPD 1954 (2233)
Q Consensus 1876 EdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT-~~FVKIYDLS~D~lSPvyyF~Lps 1954 (2233)
+++.+|.|-+-+-|+-+... .|.- +... ..-|..+-|+.++ .|+|-- ++-|+.+|=.. ..|-+.|.--+
T Consensus 180 Gd~F~v~~~~~i~i~q~d~A-~v~~----~i~~-~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~ 249 (362)
T KOG0294|consen 180 GDHFVVSGRNKIDIYQLDNA-SVFR----EIEN-PKRILCATFLDGS--ELLVGGDNEWISLKDTDS--DTPLTEFLAHE 249 (362)
T ss_pred CCEEEEEeccEEEEEecccH-hHhh----hhhc-cccceeeeecCCc--eEEEecCCceEEEeccCC--Cccceeeecch
Confidence 66667777666666665322 1111 1111 1447888898887 666554 45899999655 88999999999
Q ss_pred CCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCcccccee
Q 047869 1955 DMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKE 1999 (2233)
Q Consensus 1955 GkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltE 1999 (2233)
-.|.|..++-++++ .+|+-.||+|.|-+=++++.....+..+.|
T Consensus 250 ~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e 293 (362)
T KOG0294|consen 250 NRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMETKKRPTLLAE 293 (362)
T ss_pred hheeeeEEEecCCc-eEEEEeccCceEEEEEccccccCCcceeEE
Confidence 99999998877776 688899999999999998765544444443
No 25
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=90.62 E-value=28 Score=48.18 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=81.4
Q ss_pred cceEEEEeecccCccceEEeecccceEEEEecC-------------CCcee-------eeeeeeeccC-Cce-EEEeEEe
Q 047869 1862 VRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNP-------------RGEVT-------DRLAIELALQ-GAY-IRRVDWV 1919 (2233)
Q Consensus 1862 VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss-------------~GeV~-------DRL~LeL~Le-g~f-IIKa~WL 1919 (2233)
-...|..|..|+ +.+.|||+--..+|+.|.+. ...+. +-+.++.... |.| +.+..|.
T Consensus 303 ~~~~v~~l~Wn~-ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 303 EEEKVIELAWNS-DSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CCceeeEEEECC-CCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 344679999998 77899998776788877632 21111 1123344444 333 5555565
Q ss_pred cC--------CCceEEEEecCeEEEEeCcCCCCC-CcEEEEcC-CCCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1920 PG--------SPVQLMVVTNKFVKIYDLSQDNIS-PLHYFTLP-DDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1920 PG--------SQt~LAVVT~~FVKIYDLS~D~lS-PvyyF~Lp-sGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
.. ..+..||+-.+.+++.+|..-++. |++.|.+. +..|.+++|-... . .+.+++++|.|+.-...
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~--~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-S--RFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-C--eEEEEECCCCEEEEEec
Confidence 44 234578888888999999988887 67666665 5579999977432 2 28899999988866554
No 26
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=90.27 E-value=59 Score=40.79 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.1
Q ss_pred Eecc-ccceeeEEecCCcEEEEEcCCCc
Q 047869 2016 YFSS-TYKLLFLSFQDGTTLVGRLSPNA 2042 (2233)
Q Consensus 2016 yYS~-tl~LLF~SY~~G~Sf~a~Ls~~~ 2042 (2233)
+|+. +=+.+|+||+ |+.+...++...
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 5566 7899999999 999998876554
No 27
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=10 Score=46.34 Aligned_cols=106 Identities=22% Similarity=0.328 Sum_probs=72.6
Q ss_pred EEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEE-EEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeec
Q 047869 1926 LMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDAT-LVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQF 2003 (2233)
Q Consensus 1926 LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaT-fv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~ 2003 (2233)
+|++... .||+||+-.=---|--.|.++.+.-...+ +=+..+| .+|++.+..|.+|.-+=- .| . +....+.
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf-~G---~--~~~tfs~ 227 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAF-DG---T--VKSTFSG 227 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEcc-CC---c--EeeeEee
Confidence 5666555 89999999888899999999954433333 3334677 589999999998864432 11 1 2222221
Q ss_pred ccccccCCeEEEEeccccceeeEEecCCcEEEEEcC
Q 047869 2004 NDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLS 2039 (2233)
Q Consensus 2004 ~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls 2039 (2233)
.-... +--++-.|+++-+.++.++.+|+..+=++.
T Consensus 228 ~~~~~-~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 228 YPNAG-NLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ccCCC-CcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 11111 112788999999999999999999998873
No 28
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.78 E-value=48 Score=42.39 Aligned_cols=261 Identities=18% Similarity=0.165 Sum_probs=141.9
Q ss_pred EEEeecccCccceEEeecccce-EEEEecCCCceeeeeeeeeccCCceEEEeEE---ecCCC-ceEEEEecCeEEEEeCc
Q 047869 1866 IVHLAFNSIVENYLTVAGYEDC-QVLTLNPRGEVTDRLAIELALQGAYIRRVDW---VPGSP-VQLMVVTNKFVKIYDLS 1940 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkDC-~VLTfss~GeV~DRL~LeL~Leg~fIIKa~W---LPGSQ-t~LAVVT~~FVKIYDLS 1940 (2233)
|-++-.++.+.|.++|-.+.-. .|+.=+.+|.-.+++-+|-+++ .-|..+++ +++++ .+|||...+-+-||.+.
T Consensus 27 v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~-~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 27 VGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK-DPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred EEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecC-CcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence 3344445777888888776544 3444455553444666665553 12222222 67765 58999999999999993
Q ss_pred CC----------CCCCcEEEEcCCCCeeEEEEEEe--cCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccc
Q 047869 1941 QD----------NISPLHYFTLPDDMIVDATLVIA--SRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREI 2008 (2233)
Q Consensus 1941 ~D----------~lSPvyyF~LpsGkIrDaTfv~~--e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~ 2008 (2233)
.. .+...|.-.++- .--.+|.+.- ..|+-.|.|-|=+|.|..-+=+.- .-...+.+ .-+|+.
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~-~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~-~llPgP-- 179 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQR-TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPD-FLLPGP-- 179 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEeccc-ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCC-CCCCcC--
Confidence 32 234555555543 2233343332 356899999999999975332210 01122333 333443
Q ss_pred cCCeEEEEeccccceeeEEecCCcEEEEEcCCCccccc-ceeEEEEccCCCCCCCcccceeeccCCCceEEEEeccCCCc
Q 047869 2009 HAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSPNAASLS-EVSYVFEEQDGKLRSAGLHRWKELLASSGLFFCFSSLKSNA 2087 (2233)
Q Consensus 2009 ~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls~~~~sv~-eis~Vfe~~~gk~~~a~L~qWsEV~~hPGLf~cls~~~sn~ 2087 (2233)
+-|.+..+-++..-.+.+--+-+...-+.+-. +-..--..++...+..-...|+=..|-+-+=+++...+++-
T Consensus 180 ------l~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 180 ------LCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred ------eEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 56777776666554433322222111110000 00000001111122223678998888877766666655677
Q ss_pred eEEEEecCCceeee----ccccccCCCCCeE----EEEEeecCCCCC----eEEEEEeeCCceeEEec
Q 047869 2088 AVAVSLGTNELIAQ----NMRHAAGSTSPLV----GVTAYKPLSKDK----VHCLVLHDDGSLQIYSH 2143 (2233)
Q Consensus 2088 pvvv~l~pd~I~iQ----eiK~~~~sSs~vd----gva~y~p~s~~r----ttlLLLcEDGSLrIYsa 2143 (2233)
+-++.++...++.= .+|. .++++ .+..|....... -.+|+-.++|+|.||.-
T Consensus 254 ~~IvvLger~Lf~l~~~G~l~~----~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d 317 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKDNGSLRF----QKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED 317 (418)
T ss_pred ceEEEEecceEEEEcCCCeEEE----EEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC
Confidence 77777777666541 2333 22222 455677754333 34899999999999964
No 29
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.85 E-value=21 Score=45.87 Aligned_cols=193 Identities=21% Similarity=0.255 Sum_probs=112.8
Q ss_pred CceEEE-e-eCCeEEEEechh--hhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecC
Q 047869 1819 RGRLAV-G-EGDKVAIFDVGQ--LIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNP 1894 (2233)
Q Consensus 1819 rGrLAV-a-EgdKVTILqlsa--LLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss 1894 (2233)
.|+|+. + |.|+|-|++... .|.|-.++ -++|..+.|.| .++-++|-|=.|=.+.-+.-
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-----------------~apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAH-----------------QAPVHVTKFSP-QDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhc-----------------cCceeEEEecc-cCCeEEEecCCCceEEEEEc
Confidence 466654 3 999999999765 45443321 23455677866 55555566656655555555
Q ss_pred CCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC---eEEEEeCcCCCCCCcEEEE----------cCCCCe----
Q 047869 1895 RGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK---FVKIYDLSQDNISPLHYFT----------LPDDMI---- 1957 (2233)
Q Consensus 1895 ~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~---FVKIYDLS~D~lSPvyyF~----------LpsGkI---- 1957 (2233)
++..+ +.+++--..|||...|.|+..- +|+|-- +||.||.-... +++++|- ||+|.+
T Consensus 141 s~a~v---~~~l~~htDYVR~g~~~~~~~h--ivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 141 STAYV---QAELSGHTDYVRCGDISPANDH--IVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASA 214 (487)
T ss_pred CCcEE---EEEecCCcceeEeeccccCCCe--EEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEc
Confidence 44442 4455555789999999999744 456654 89999997775 6666553 344322
Q ss_pred -------eEEEEE-------EecCCcEEEEEEecCC-ceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccc
Q 047869 1958 -------VDATLV-------IASRGKMFLIVLSECG-SLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYK 2022 (2233)
Q Consensus 1958 -------rDaTfv-------~~e~G~~~ILVLSS~G-~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~ 2022 (2233)
-|.+-. .+.+.+.-.+.+.++| .||.--+ .+....+..++.--+......+.-+||--|+.-+
T Consensus 215 gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL--D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 215 GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL--DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred CCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc--ccceEEEEccceEEEEeeecccceeeEEecCCCc
Confidence 122100 0011122233333333 1111111 1233344444444444556677788999999889
Q ss_pred eeeEEecCCcEEEEE
Q 047869 2023 LLFLSFQDGTTLVGR 2037 (2233)
Q Consensus 2023 LLF~SY~~G~Sf~a~ 2037 (2233)
.+-+...+|..++.+
T Consensus 293 t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 293 TVVIGMSNGLVSIRR 307 (487)
T ss_pred eEEEecccceeeeeh
Confidence 999999998888863
No 30
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=87.84 E-value=25 Score=39.76 Aligned_cols=138 Identities=18% Similarity=0.291 Sum_probs=80.2
Q ss_pred EeecccCccceEEeecc-----------cceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEec---Ce
Q 047869 1868 HLAFNSIVENYLTVAGY-----------EDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTN---KF 1933 (2233)
Q Consensus 1868 sLafNP~nEdyLAVcGL-----------kDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~---~F 1933 (2233)
.|.-|| +++||+|-=- -+-.++.++.++.-.+.+.++ -+| -|..+.|=|.++. +||++. ..
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~--~~~-~I~~~~WsP~g~~-favi~g~~~~~ 84 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK--KEG-PIHDVAWSPNGNE-FAVIYGSMPAK 84 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc--CCC-ceEEEEECcCCCE-EEEEEccCCcc
Confidence 555666 5666665433 245566665555444333332 223 4999999998754 776653 37
Q ss_pred EEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEE--ecCCceEEEEecccCCCccccceeeeecccccccCC
Q 047869 1934 VKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVL--SECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAK 2011 (2233)
Q Consensus 1934 VKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVL--SS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~ 2011 (2233)
|.|||+. ..|++. ++.+.+- ++...+.|++.++.- ...|.|+.-++.. ...+.+. ....
T Consensus 85 v~lyd~~---~~~i~~--~~~~~~n--~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--------~~~i~~~----~~~~ 145 (194)
T PF08662_consen 85 VTLYDVK---GKKIFS--FGTQPRN--TISWSPDGRFLVLAGFGNLNGDLEFWDVRK--------KKKISTF----EHSD 145 (194)
T ss_pred cEEEcCc---ccEeEe--ecCCCce--EEEECCCCCEEEEEEccCCCcEEEEEECCC--------CEEeecc----ccCc
Confidence 9999995 445554 4565554 344568897555543 2357777766651 1111111 1233
Q ss_pred eEEEEeccccceeeEEec
Q 047869 2012 GLSLYFSSTYKLLFLSFQ 2029 (2233)
Q Consensus 2012 GVSVyYS~tl~LLF~SY~ 2029 (2233)
...+.+|++-+.+..+.+
T Consensus 146 ~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEEEEEcCCCCEEEEEEe
Confidence 577889988777776654
No 31
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.68 E-value=75 Score=38.64 Aligned_cols=225 Identities=17% Similarity=0.280 Sum_probs=118.8
Q ss_pred cceeccc-CceEEEe--eCCeEEEEechhh--hcccccCCccccccccccccccccceEEEEeecccCccceEEee--cc
Q 047869 1812 SLLSVSS-RGRLAVG--EGDKVAIFDVGQL--IGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVA--GY 1884 (2233)
Q Consensus 1812 qLLSas~-rGrLAVa--EgdKVTILqlsaL--LkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVc--GL 1884 (2233)
.-++.+. ++.|+|+ .++.|+++++..- ++.... ...-..--|-.....+-...++.+.| +++|+.|+ |.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~---~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ---TVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE---EEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee---ecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 3456654 4557776 7999999999652 111110 00000001111122344567899988 78888887 78
Q ss_pred cceEEEEecCCC-ceeeeeeeeeccC-CceEEEeEEecCCCceEEEEe--cCeEEEEeCcCCC--CCCcEEEEc-CC---
Q 047869 1885 EDCQVLTLNPRG-EVTDRLAIELALQ-GAYIRRVDWVPGSPVQLMVVT--NKFVKIYDLSQDN--ISPLHYFTL-PD--- 1954 (2233)
Q Consensus 1885 kDC~VLTfss~G-eV~DRL~LeL~Le-g~fIIKa~WLPGSQt~LAVVT--~~FVKIYDLS~D~--lSPvyyF~L-ps--- 1954 (2233)
..+.++.++..+ .+.....+ .++ |.==|.+.|-|..+. +-|+. +..|.+|++.... +........ |.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~--~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSI--KVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEE--ECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSC
T ss_pred CEEEEEEEeCCCceEEEeecc--ccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEEeecccCCceeEEEEeeecccccc
Confidence 889999998776 44442333 333 555677888886543 33443 4489999998333 333333332 22
Q ss_pred CCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEec-CCcE
Q 047869 1955 DMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQ-DGTT 2033 (2233)
Q Consensus 1955 GkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~-~G~S 2033 (2233)
|.-.-+.+...++|+...+.--..+.|-.-++... .+....... ++.+-.. --.+-.+++=++|+++-+ +++.
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~--~g~l~~~~~--~~~~G~~--Pr~~~~s~~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA--TGTLTLVQT--VPTGGKF--PRHFAFSPDGRYLYVANQDSNTV 316 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT--TTTEEEEEE--EEESSSS--EEEEEE-TTSSEEEEEETTTTEE
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC--CCceEEEEE--EeCCCCC--ccEEEEeCCCCEEEEEecCCCeE
Confidence 22234555556777643333334555666666422 222222222 2221111 234455999999999875 4455
Q ss_pred EEEEcCCCccccccee
Q 047869 2034 LVGRLSPNAASLSEVS 2049 (2233)
Q Consensus 2034 f~a~Ls~~~~sv~eis 2049 (2233)
.+-+++..++.++.+.
T Consensus 317 ~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 317 SVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCcEEEec
Confidence 5556666665554444
No 32
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.14 E-value=56 Score=36.55 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=78.1
Q ss_pred EEeecccCccceEEeecccceEEEEecCC-CceeeeeeeeeccCCceEEEeEEecCCCceEEEEe--cCeEEEEeCcCCC
Q 047869 1867 VHLAFNSIVENYLTVAGYEDCQVLTLNPR-GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT--NKFVKIYDLSQDN 1943 (2233)
Q Consensus 1867 lsLafNP~nEdyLAVcGLkDC~VLTfss~-GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT--~~FVKIYDLS~D~ 1943 (2233)
.+++++| ++++|++++..+-.|..++.+ |++...+. . +.-+..+.|-|..+. ++++. ...|++||+....
T Consensus 34 ~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~-~~~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 34 RGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP----S-GPDPELFALHPNGKI-LYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc----C-CCCccEEEECCCCCE-EEEEcCCCCeEEEEECCCCe
Confidence 4688887 566777777666666666644 44433222 1 222455678888764 44443 3589999997632
Q ss_pred CCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCC-ceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccc
Q 047869 1944 ISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECG-SLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYK 2022 (2233)
Q Consensus 1944 lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G-~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~ 2022 (2233)
+...+... ..+.. +.+.++|+.+ ++.+..+ .++..+... + .....+.. .....++.++++-+
T Consensus 107 --~~~~~~~~-~~~~~--~~~~~dg~~l-~~~~~~~~~~~~~d~~~----~--~~~~~~~~-----~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 107 --VLAEIPVG-VEPEG--MAVSPDGKIV-VNTSETTNMAHFIDTKT----Y--EIVDNVLV-----DQRPRFAEFTADGK 169 (300)
T ss_pred --EEeEeeCC-CCcce--EEECCCCCEE-EEEecCCCeEEEEeCCC----C--eEEEEEEc-----CCCccEEEECCCCC
Confidence 33333221 12333 3335677643 3344433 344433321 1 11111111 11223467888888
Q ss_pred eeeEEec-CCcEEEEEc
Q 047869 2023 LLFLSFQ-DGTTLVGRL 2038 (2233)
Q Consensus 2023 LLF~SY~-~G~Sf~a~L 2038 (2233)
.|+++.. +|+.++-.+
T Consensus 170 ~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDV 186 (300)
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 8887764 666555444
No 33
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.48 E-value=12 Score=46.88 Aligned_cols=149 Identities=23% Similarity=0.279 Sum_probs=93.0
Q ss_pred eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeee-
Q 047869 1826 EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAI- 1904 (2233)
Q Consensus 1826 EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~L- 1904 (2233)
-.|.|-|+++..|---..+. +. .=+|.-|+||| ++.+|| |=+.+|+|+.=..+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~---aH------------~~~lAalafs~-~G~llA----------TASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTIN---AH------------KGPLAALAFSP-DGTLLA----------TASEKGTVIRVFSVP 204 (391)
T ss_pred CCceEEEEEcccceeeeEEE---ec------------CCceeEEEECC-CCCEEE----------EeccCceEEEEEEcC
Confidence 46677777775553332211 11 22455788988 788887 44677777765444
Q ss_pred eecc--C---Cce---EEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcE----------------------------
Q 047869 1905 ELAL--Q---GAY---IRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLH---------------------------- 1948 (2233)
Q Consensus 1905 eL~L--e---g~f---IIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvy---------------------------- 1948 (2233)
+.+. + |.+ |--...=|.+|..-|.--++.|.||-|.+-..+|..
T Consensus 205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~ 284 (391)
T KOG2110|consen 205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVL 284 (391)
T ss_pred CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhh
Confidence 2221 2 554 666778889987556666779999999887655433
Q ss_pred -------EEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeee
Q 047869 1949 -------YFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEII 2001 (2233)
Q Consensus 1949 -------yF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvv 2001 (2233)
|-.+|.+..+-.+.+..-.-..++.|.|++|++|+..++.. ++|.+.+.+.-
T Consensus 285 ~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~-~gGec~lik~h 343 (391)
T KOG2110|consen 285 DQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK-EGGECALIKRH 343 (391)
T ss_pred hhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC-CCceeEEEEee
Confidence 22333333322232322222358899999999999999965 66778877753
No 34
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=2.6 Score=54.05 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=68.7
Q ss_pred ccccccceEEEEeecccCccceEEeecccceEEEEe----cCCCceeeee-ee---eecc--------CCceEEEeEEec
Q 047869 1857 LSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTL----NPRGEVTDRL-AI---ELAL--------QGAYIRRVDWVP 1920 (2233)
Q Consensus 1857 LSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTf----ss~GeV~DRL-~L---eL~L--------eg~fIIKa~WLP 1920 (2233)
+-.++|-|+|-+|..|| .+...|..|.+-.-|+-+ +++|.+.|-- +| ...+ ...-++.|.|=|
T Consensus 97 ~P~~~V~feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP 175 (741)
T KOG4460|consen 97 LPINPVLFEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHP 175 (741)
T ss_pred ccCCcceEEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccC
Confidence 45689999999999999 789999999999999876 8888888862 11 1111 133589999999
Q ss_pred CC--CceEEEEecC-eEEEEeCcCCCC
Q 047869 1921 GS--PVQLMVVTNK-FVKIYDLSQDNI 1944 (2233)
Q Consensus 1921 GS--Qt~LAVVT~~-FVKIYDLS~D~l 1944 (2233)
.| -+-|.|.|++ -++|||||++.-
T Consensus 176 ~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 176 SSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred CccCCceEEEEecCcEEEEEecCCcch
Confidence 99 7777777766 889999998763
No 35
>PTZ00420 coronin; Provisional
Probab=85.83 E-value=31 Score=45.52 Aligned_cols=195 Identities=11% Similarity=0.134 Sum_probs=108.0
Q ss_pred CceEEE-eeCCeEEEEechhhhcccccCCccccccccccccc-cccceEEEEeecccCccceEEeeccc-ceEEEEecCC
Q 047869 1819 RGRLAV-GEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSR-NIVRFEIVHLAFNSIVENYLTVAGYE-DCQVLTLNPR 1895 (2233)
Q Consensus 1819 rGrLAV-aEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSs-a~VpFeVlsLafNP~nEdyLAVcGLk-DC~VLTfss~ 1895 (2233)
...||. ++.++|.|+++..--.. ..++. .|+.. ..-.-.|-.++|+|...++||.+|.. .+.|.-+. +
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~-------~~~i~-~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-t 157 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDES-------VKEIK-DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-N 157 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCcc-------ccccc-cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-C
Confidence 345665 48889999998531000 00000 01100 01123588999999877777777753 34444443 3
Q ss_pred CceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEe---cCCcEE
Q 047869 1896 GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIA---SRGKMF 1971 (2233)
Q Consensus 1896 GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~---e~G~~~ 1971 (2233)
|... ..+.. +.-|..+.|-|... .||.++.+ .|+|||+... .+...|.-..|.+...+++.. .++. +
T Consensus 158 g~~~----~~i~~-~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~ 228 (568)
T PTZ00420 158 EKRA----FQINM-PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLGGDDN-Y 228 (568)
T ss_pred CcEE----EEEec-CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC--cEEEEEecccCCceeEEEEeeeEcCCCC-E
Confidence 3322 12222 34588999999765 45555544 8999999764 455677777777655555542 3444 4
Q ss_pred EEEEecCC----ceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEe-cCCcEEEEEcC
Q 047869 1972 LIVLSECG----SLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSF-QDGTTLVGRLS 2039 (2233)
Q Consensus 1972 ILVLSS~G----~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY-~~G~Sf~a~Ls 2039 (2233)
|+..+.++ .|+.=++...+. .+ .....+...+.+.-+|-+..+++|++= .+|+..+-.+.
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~----pl----~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTS----AL----VTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCC----ce----EEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 55544443 566666653221 11 111223344455567777777777554 56666666664
No 36
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=85.79 E-value=69 Score=39.33 Aligned_cols=237 Identities=18% Similarity=0.238 Sum_probs=122.9
Q ss_pred ccceEEeecccceEEEEecCC--CceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCC---CCCcE
Q 047869 1875 VENYLTVAGYEDCQVLTLNPR--GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDN---ISPLH 1948 (2233)
Q Consensus 1875 nEdyLAVcGLkDC~VLTfss~--GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~---lSPvy 1948 (2233)
|++.|||.= +.|.-++=..+ ++++-+-+| +.-..--=||+.|=|+. +.||.+.+. .|+||||--.+ ++|..
T Consensus 8 ~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqV-pkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p~~ 84 (282)
T PF15492_consen 8 DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQV-PKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPPAM 84 (282)
T ss_pred CCcEEEEEe-ccEEEEEeccCCchheeEEEec-CCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCccc
Confidence 667777653 23333332222 233344433 11123347999998885 568887766 99999998543 34544
Q ss_pred EEEcC-CCCeeEEEEEEecC-C--cEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEecccccee
Q 047869 1949 YFTLP-DDMIVDATLVIASR-G--KMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLL 2024 (2233)
Q Consensus 1949 yF~Lp-sGkIrDaTfv~~e~-G--~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LL 2024 (2233)
.|... +..|....|.-... - ...++|++=.|.|=..-++...+.+ +.-.-..+... .-..|--++-|.+.++||
T Consensus 85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-y~e~hsfsf~~-~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-YQENHSFSFSS-HYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-ceeeEEEEecc-cCCCceeEEEEcCCCCEE
Confidence 33211 23466666654321 1 3477888877777655554221111 11111112111 112334457899999999
Q ss_pred eEEecCCcEEEEEcCCCcccccceeEEEEccCCCCCCCcccceeeccCCCceEEEEeccCCCceEEEEecCCceeeec--
Q 047869 2025 FLSFQDGTTLVGRLSPNAASLSEVSYVFEEQDGKLRSAGLHRWKELLASSGLFFCFSSLKSNAAVAVSLGTNELIAQN-- 2102 (2233)
Q Consensus 2025 F~SY~~G~Sf~a~Ls~~~~sv~eis~Vfe~~~gk~~~a~L~qWsEV~~hPGLf~cls~~~sn~pvvv~l~pd~I~iQe-- 2102 (2233)
+++=.. +. +...++...+|++.|+-+-+-|=-....++ +..+... +.+-..++
T Consensus 163 lVgG~~--------~~------------~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~---~~~~~~~--~~~~~~~~~~ 217 (282)
T PF15492_consen 163 LVGGCE--------QN------------QDGMSKASSCGLTAWRILSDSPYYKQVTSS---EDDITAS--SKRRGLLRIP 217 (282)
T ss_pred EEeccC--------CC------------CCccccccccCceEEEEcCCCCcEEEcccc---Ccccccc--ccccceeecc
Confidence 964221 11 111234567899999988777755433222 2222111 11111111
Q ss_pred -cccccCCCCCeEEEEEeecCCCCCeEEEEEeeCCceeEEe
Q 047869 2103 -MRHAAGSTSPLVGVTAYKPLSKDKVHCLVLHDDGSLQIYS 2142 (2233)
Q Consensus 2103 -iK~~~~sSs~vdgva~y~p~s~~rttlLLLcEDGSLrIYs 2142 (2233)
.|.-.......+++-- =.++-+.+.+..++-+|+|-+|.
T Consensus 218 ~~~~fs~~~~~~d~i~k-mSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 218 SFKFFSRQGQEQDGIFK-MSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ceeeeeccccCCCceEE-EEECCCCCEEEEEEcCCeEEEEe
Confidence 1111111222233221 23467888999999999999998
No 37
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.60 E-value=24 Score=45.66 Aligned_cols=243 Identities=19% Similarity=0.232 Sum_probs=141.5
Q ss_pred EEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCC-Cceeee
Q 047869 1823 AVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPR-GEVTDR 1901 (2233)
Q Consensus 1823 AVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~-GeV~DR 1901 (2233)
+..-|||+-|+|.+++-....-.+.+ +-| .+-++..|.- ++|+|+---+=.|+++..+ |. +-.
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t------------~~p-g~~s~~w~~~--n~lvvas~~gdk~~~~~~K~g~-~~~ 70 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQT------------AEP-GDFSFNWQRR--NFLVVASMAGDKVMRIKEKDGK-TPE 70 (673)
T ss_pred eeccCCceEEeecccccCccccccCC------------CCC-cceeeecccc--ceEEEeecCCceeEEEecccCC-CCc
Confidence 44579999999998776555432211 111 1567766654 4599988887788877443 33 222
Q ss_pred eee-eecc-CCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCC
Q 047869 1902 LAI-ELAL-QGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECG 1979 (2233)
Q Consensus 1902 L~L-eL~L-eg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G 1979 (2233)
+.+ +... +.+++..+ ...|.++++.=+++-||||||-..- .|-| +-|---.+|.+-..+.--+|--.|-.|
T Consensus 71 Vp~~~k~~gd~~~Cv~~--~s~S~y~~sgG~~~~Vkiwdl~~kl---~hr~--lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 71 VPRVRKLTGDNAFCVAC--ASQSLYEISGGQSGCVKIWDLRAKL---IHRF--LKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred cceeeccccchHHHHhh--hhcceeeeccCcCceeeehhhHHHH---Hhhh--ccCCcceeEEEEecCCcceeEEeccCC
Confidence 222 2211 23343332 3456777888899999999997332 2222 223223344443444446888889999
Q ss_pred ceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEec-CCcEEEEEcCCCcccccceeEEEEccCCC
Q 047869 1980 SLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQ-DGTTLVGRLSPNAASLSEVSYVFEEQDGK 2058 (2233)
Q Consensus 1980 ~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~-~G~Sf~a~Ls~~~~sv~eis~Vfe~~~gk 2058 (2233)
.|-.+.+.-.+.. +....+.+|.- ==+.||..-+.|..+-. +|..-+=-+ +
T Consensus 144 diiih~~~t~~~t------t~f~~~sgqsv---Rll~ys~skr~lL~~asd~G~VtlwDv-------~------------ 195 (673)
T KOG4378|consen 144 DIIIHGTKTKQKT------TTFTIDSGQSV---RLLRYSPSKRFLLSIASDKGAVTLWDV-------Q------------ 195 (673)
T ss_pred cEEEEecccCccc------cceecCCCCeE---EEeecccccceeeEeeccCCeEEEEec-------c------------
Confidence 9999887643322 11222322221 13578887777766543 333222111 1
Q ss_pred CCCCcccceeeccCCCceEEEEeccCCCceEEEEecCC-ceeeeccccccCCCCCeEEEEEeecCC
Q 047869 2059 LRSAGLHRWKELLASSGLFFCFSSLKSNAAVAVSLGTN-ELIAQNMRHAAGSTSPLVGVTAYKPLS 2123 (2233)
Q Consensus 2059 ~~~a~L~qWsEV~~hPGLf~cls~~~sn~pvvv~l~pd-~I~iQeiK~~~~sSs~vdgva~y~p~s 2123 (2233)
...+.++|.|+-.-|-==+|++- +|-.+++.++.| .|.+-.++. .+..+-++.-||++
T Consensus 196 -g~sp~~~~~~~HsAP~~gicfsp--sne~l~vsVG~Dkki~~yD~~s----~~s~~~l~y~~Pls 254 (673)
T KOG4378|consen 196 -GMSPIFHASEAHSAPCRGICFSP--SNEALLVSVGYDKKINIYDIRS----QASTDRLTYSHPLS 254 (673)
T ss_pred -CCCcccchhhhccCCcCcceecC--CccceEEEecccceEEEeeccc----ccccceeeecCCcc
Confidence 22458999998666644347555 899999999875 566767774 34445666667765
No 38
>PTZ00420 coronin; Provisional
Probab=85.36 E-value=1.4e+02 Score=39.66 Aligned_cols=116 Identities=11% Similarity=0.029 Sum_probs=76.3
Q ss_pred CceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCC------CCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceE
Q 047869 1910 GAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNI------SPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLY 1982 (2233)
Q Consensus 1910 g~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~l------SPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY 1982 (2233)
..-|..+.|-|.....||....+ .|||||+..... .|...+.--.+.|..+.| .+.|..+++..|.+|.|.
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf--~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW--NPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE--CCCCCeEEEEEeCCCeEE
Confidence 56799999999754567766655 999999975432 355555544667776664 356766666778899999
Q ss_pred EEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEEEc
Q 047869 1983 RLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRL 2038 (2233)
Q Consensus 1983 ~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~L 2038 (2233)
.-+++.... ...+.. ...-.++-|+++-++|..+..+|+..+--+
T Consensus 152 IWDl~tg~~--------~~~i~~---~~~V~SlswspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 152 IWDIENEKR--------AFQINM---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEECCCCcE--------EEEEec---CCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence 888763211 011111 223567888888887777777777666554
No 39
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=84.81 E-value=22 Score=46.79 Aligned_cols=261 Identities=19% Similarity=0.254 Sum_probs=155.1
Q ss_pred cccceecccCceEEE-e-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccce
Q 047869 1810 VKSLLSVSSRGRLAV-G-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDC 1887 (2233)
Q Consensus 1810 iRqLLSas~rGrLAV-a-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC 1887 (2233)
+...||++.+|...+ + +-|.|-|+-+. |.+++-...+-. +|.+|+|||....-+..+-..+|
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~-----------TgRcvr~~~~d~-----~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIA-----------TGRCVRTVQFDS-----EIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEee-----------cceEEEEEeecc-----eeEEEEecCCCCceeEEEEecCc
Confidence 456678887776433 2 55556666651 234443333333 89999999999988888888899
Q ss_pred EEEEecCCCceeeeeeeeeccC--Cce-------EEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCee
Q 047869 1888 QVLTLNPRGEVTDRLAIELALQ--GAY-------IRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIV 1958 (2233)
Q Consensus 1888 ~VLTfss~GeV~DRL~LeL~Le--g~f-------IIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIr 1958 (2233)
++.+|+. +.||+...+.-+ +.. ---|.|.++++-++-.- |+ ...--.-.|+
T Consensus 466 -~~ivnp~--~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~----v~-------------~~I~~~k~i~ 525 (733)
T KOG0650|consen 466 -VLIVNPI--FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKG----VC-------------IVIKHPKSIR 525 (733)
T ss_pred -eEEeCcc--ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccc----eE-------------EEEecCCccc
Confidence 7777664 336666644432 111 12368999987665311 11 1111223688
Q ss_pred EEEEEEecCCcEEEEEEecCCc--eEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEE
Q 047869 1959 DATLVIASRGKMFLIVLSECGS--LYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVG 2036 (2233)
Q Consensus 1959 DaTfv~~e~G~~~ILVLSS~G~--LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a 2036 (2233)
++| |. .+|.++-.||-+.|. ++++++++.. .|.|.....|--+-+.|-++...||++.+.---..
T Consensus 526 ~vt-WH-rkGDYlatV~~~~~~~~VliHQLSK~~----------sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiY- 592 (733)
T KOG0650|consen 526 QVT-WH-RKGDYLATVMPDSGNKSVLIHQLSKRK----------SQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIY- 592 (733)
T ss_pred eee-ee-cCCceEEEeccCCCcceEEEEeccccc----------ccCchhhcCCceeEEEecCCCceEEEEeccceEEE-
Confidence 888 64 458888888887664 8899999754 23344444455566788888889999876532222
Q ss_pred EcCCCcccccceeEEEEccCCCCCCCcccce-eeccCCC---ceEEEEeccCCCceEEEEecCCceeeeccccccCCCCC
Q 047869 2037 RLSPNAASLSEVSYVFEEQDGKLRSAGLHRW-KELLASS---GLFFCFSSLKSNAAVAVSLGTNELIAQNMRHAAGSTSP 2112 (2233)
Q Consensus 2037 ~Ls~~~~sv~eis~Vfe~~~gk~~~a~L~qW-sEV~~hP---GLf~cls~~~sn~pvvv~l~pd~I~iQeiK~~~~sSs~ 2112 (2233)
.|... .-| ++.-.-|.| +-+..|| .||+. +. .+..+.+-+.-...-.|.+|+...
T Consensus 593 dL~kq-elv-------------KkL~tg~kwiS~msihp~GDnli~g-s~--d~k~~WfDldlsskPyk~lr~H~~---- 651 (733)
T KOG0650|consen 593 DLSKQ-ELV-------------KKLLTGSKWISSMSIHPNGDNLILG-SY--DKKMCWFDLDLSSKPYKTLRLHEK---- 651 (733)
T ss_pred ehhHH-HHH-------------HHHhcCCeeeeeeeecCCCCeEEEe-cC--CCeeEEEEcccCcchhHHhhhhhh----
Confidence 12110 001 112224666 5566666 56544 44 677777777777777788887321
Q ss_pred eEEEEEeecCCCCCeEEEEEe-eCCceeEEecc
Q 047869 2113 LVGVTAYKPLSKDKVHCLVLH-DDGSLQIYSHV 2144 (2233)
Q Consensus 2113 vdgva~y~p~s~~rttlLLLc-EDGSLrIYsa~ 2144 (2233)
.+--++||+ |-+++.-+ |||.+.||-..
T Consensus 652 avr~Va~H~----ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 652 AVRSVAFHK----RYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred hhhhhhhcc----ccceeeeecCCCcEEEEeee
Confidence 111122332 55555444 56999999653
No 40
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.29 E-value=20 Score=45.76 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=86.5
Q ss_pred ccccceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEe
Q 047869 1859 RNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYD 1938 (2233)
Q Consensus 1859 sa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYD 1938 (2233)
+-.++|.+..|-+ +..|+|.|-.-...+.+ .+|.++-++.+.. |+++.|-+. ...+|++|.+.|-|++
T Consensus 104 ~i~~~~~~~~If~----G~LL~~~~~~~i~~yDw-~~~~~i~~i~v~~------vk~V~Ws~~-g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 104 SIKLPFSVEKIFG----GNLLGVKSSDFICFYDW-ETGKLIRRIDVSA------VKYVIWSDD-GELVALVTKDSIYILK 171 (443)
T ss_dssp ----SS-EEEEE-----SSSEEEEETTEEEEE-T-TT--EEEEESS-E-------EEEEE-TT-SSEEEEE-S-SEEEEE
T ss_pred EEcCCcccceEEc----CcEEEEECCCCEEEEEh-hHcceeeEEecCC------CcEEEEECC-CCEEEEEeCCeEEEEE
Confidence 3455667777866 88999998886777777 5568888877652 888999877 4569999999999998
Q ss_pred CcCC------------CCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccc
Q 047869 1939 LSQD------------NISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDR 2006 (2233)
Q Consensus 1939 LS~D------------~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~ 2006 (2233)
-..+ ++...++. ..+|.+.++. |. +++-|+.++|.| +- .|+.+.....+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~----~d--~fiYtT~~~lkY--l~-~Ge~~~i~~ld~------ 233 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWV----ED--CFIYTTSNHLKY--LV-NGETGIIAHLDK------ 233 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEE----TT--EEEEE-TTEEEE--EE-TTEEEEEEE-SS------
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEE----cC--EEEEEcCCeEEE--EE-cCCcceEEEcCC------
Confidence 8888 76666665 5577777744 33 566666669998 33 344444433331
Q ss_pred cccCCeEEEEeccccceeeEEecCCcEEEEEcCC
Q 047869 2007 EIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSP 2040 (2233)
Q Consensus 2007 q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls~ 2040 (2233)
.---+.|.+..+.||+-=.++..+.-+++.
T Consensus 234 ----~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 ----PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ------EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 134466777778888887888777776643
No 41
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=84.15 E-value=9.1 Score=49.96 Aligned_cols=148 Identities=22% Similarity=0.252 Sum_probs=92.3
Q ss_pred EEEeecccCccceEEeecc----cceEEEEecCCCceeeeeeeeec-cCCceEEEeEEecCCCceEEEEecCeEEEEeCc
Q 047869 1866 IVHLAFNSIVENYLTVAGY----EDCQVLTLNPRGEVTDRLAIELA-LQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLS 1940 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGL----kDC~VLTfss~GeV~DRL~LeL~-Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS 1940 (2233)
|-+|+. +-.+||||++-. +.+.|.-++.+ ....|- .-+..|.++-.=|-. -.|-|+|..+|+||||+
T Consensus 524 i~~vtW-HrkGDYlatV~~~~~~~~VliHQLSK~------~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq~~vRiYdL~ 595 (733)
T KOG0650|consen 524 IRQVTW-HRKGDYLATVMPDSGNKSVLIHQLSKR------KSQSPFRKSKGLVQRVKFHPSK-PYLFVATQRSVRIYDLS 595 (733)
T ss_pred cceeee-ecCCceEEEeccCCCcceEEEEecccc------cccCchhhcCCceeEEEecCCC-ceEEEEeccceEEEehh
Confidence 334444 557899998766 66777766544 222222 336667777777664 55889999999999999
Q ss_pred CCCCCCcEEEEcCCC-CeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEecc
Q 047869 1941 QDNISPLHYFTLPDD-MIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSS 2019 (2233)
Q Consensus 1941 ~D~lSPvyyF~LpsG-kIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~ 2019 (2233)
+-.+.= .|-+| ++.+.--+ ...|- -+|+.|-++.+-..++..+...+..-.. -...+=+|-|-.
T Consensus 596 kqelvK----kL~tg~kwiS~msi-hp~GD-nli~gs~d~k~~WfDldlsskPyk~lr~---------H~~avr~Va~H~ 660 (733)
T KOG0650|consen 596 KQELVK----KLLTGSKWISSMSI-HPNGD-NLILGSYDKKMCWFDLDLSSKPYKTLRL---------HEKAVRSVAFHK 660 (733)
T ss_pred HHHHHH----HHhcCCeeeeeeee-cCCCC-eEEEecCCCeeEEEEcccCcchhHHhhh---------hhhhhhhhhhcc
Confidence 855322 12233 34433323 35564 5778899999999999866543222111 122344566667
Q ss_pred ccceeeEEecCCcEEEE
Q 047869 2020 TYKLLFLSFQDGTTLVG 2036 (2233)
Q Consensus 2020 tl~LLF~SY~~G~Sf~a 2036 (2233)
.+.|.=..+.+|+.++.
T Consensus 661 ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 661 RYPLFASGSDDGTVIVF 677 (733)
T ss_pred ccceeeeecCCCcEEEE
Confidence 77776667777887664
No 42
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.81 E-value=4.2 Score=51.80 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=49.3
Q ss_pred CcCCCCCCcEEEEcCCCCe-eEEEEEEe-cCCcEEEEEEecCCceEEEEeccc-----CCCccccceeeee--ccccccc
Q 047869 1939 LSQDNISPLHYFTLPDDMI-VDATLVIA-SRGKMFLIVLSECGSLYRLELSVE-----GNVGATPLKEIIQ--FNDREIH 2009 (2233)
Q Consensus 1939 LS~D~lSPvyyF~LpsGkI-rDaTfv~~-e~G~~~ILVLSS~G~LY~Qels~s-----~d~g~~~ltEvvq--~~~~q~~ 2009 (2233)
+.+....+...|..|..-+ -.++.+.. ++..++|+|++++|++|+-.++.. .+.....+.++.+ .|..-..
T Consensus 65 ~~~~~~~~~lri~Fp~~~~~~~~v~~~~~~~~~~~v~v~t~s~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 144 (547)
T PF11715_consen 65 LDKNLLNNTLRIHFPSPIILPGCVAFSETEDHVLIVFVTTSSGHLYTLTLPSDFFRSFSDLSEDNFEDWCRSYVPYSFSF 144 (547)
T ss_dssp --------EEEEE-SS-BTT-GGGGEEEEE-SEEEEEEEBTTS-EEEEEEEHHHHHS---S---S--S-EE-B-SS-TTT
T ss_pred ccccccCCeEEEECCCcCeeCCeEEEEECCCCEEEEEEEeCCCEEEEEECCChhhccccccccccccCccEeeeCCCCCc
Confidence 3334444777888888666 34443433 334789999999999999888743 2333333344422 2222122
Q ss_pred CCeEEEEec--cccceeeEEecCCcEEEEEcCC
Q 047869 2010 AKGLSLYFS--STYKLLFLSFQDGTTLVGRLSP 2040 (2233)
Q Consensus 2010 ~~GVSVyYS--~tl~LLF~SY~~G~Sf~a~Ls~ 2040 (2233)
..-.-++.+ ..-..+++++.+|.-+.-.+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~v~~~dG~ll~l~~~~ 177 (547)
T PF11715_consen 145 RSPHRLAAVTHDSEANLVVSLQDGGLLRLKRSS 177 (547)
T ss_dssp S-EEEEEEE---SSSBEEEEESSS-EEEEEES-
T ss_pred cCCCeEEEEEecCCCEEEEEECCCCeEEEECCc
Confidence 222223333 2778999999999888776644
No 43
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=78.83 E-value=11 Score=47.80 Aligned_cols=140 Identities=18% Similarity=0.228 Sum_probs=87.4
Q ss_pred EEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCCcee--e
Q 047869 1823 AVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVT--D 1900 (2233)
Q Consensus 1823 AVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~--D 1900 (2233)
+|++.+++-|+|++. ++...+ .+.+ +=.=+|-.++|||-|+..||-++ ++|+|- |
T Consensus 245 sv~dd~~L~iwD~R~--~~~~~~-~~~~----------ah~~~vn~~~fnp~~~~ilAT~S----------~D~tV~LwD 301 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRS--NTSKPS-HSVK----------AHSAEVNCVAFNPFNEFILATGS----------ADKTVALWD 301 (422)
T ss_pred eecCCCeEEEEEcCC--CCCCCc-cccc----------ccCCceeEEEeCCCCCceEEecc----------CCCcEEEee
Confidence 478999999999986 322211 1111 11346789999999988888766 233221 2
Q ss_pred ee----eeeeccC-CceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCC----------CcEEEEcC--CCCeeEEEE
Q 047869 1901 RL----AIELALQ-GAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNIS----------PLHYFTLP--DDMIVDATL 1962 (2233)
Q Consensus 1901 RL----~LeL~Le-g~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lS----------PvyyF~Lp--sGkIrDaTf 1962 (2233)
+- .++-... +.=|-+++|=|...+-||....+ .+.||||++---- |-.-|+.- .++|.|.+.
T Consensus 302 lRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 302 LRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred chhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 21 2222222 56689999999999999966555 9999999975432 33345544 456777773
Q ss_pred EEecCCcEEEEEEecCCceEEEEec
Q 047869 1963 VIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1963 v~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
++.---.|.-.++++.|-+=++.
T Consensus 382 --np~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 382 --NPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred --CCCCCeEEEEecCCceEEEeecc
Confidence 23333456666677666654444
No 44
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=78.38 E-value=1.4e+02 Score=37.18 Aligned_cols=181 Identities=20% Similarity=0.307 Sum_probs=98.2
Q ss_pred eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeeccc-ceEEEEecCC-Cceeeeee
Q 047869 1826 EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYE-DCQVLTLNPR-GEVTDRLA 1903 (2233)
Q Consensus 1826 EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLk-DC~VLTfss~-GeV~DRL~ 1903 (2233)
..||+.|++.-. .-|...-||-++ =||..+|.| +.+|.|--|+. .|.|+.++.+ -+..-+..
T Consensus 75 qDGklIvWDs~T-----------tnK~haipl~s~----WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 75 QDGKLIVWDSFT-----------TNKVHAIPLPSS----WVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred cCCeEEEEEccc-----------ccceeEEecCce----eEEEEEECC-CCCeEEecCcCceeEEEecccccccccceee
Confidence 556666776522 233444444332 478999999 89999999996 5889999733 22222222
Q ss_pred eeeccCCceEEEeEEecCCCc------------------eEEE------------------------EecCeEEEEeCcC
Q 047869 1904 IELALQGAYIRRVDWVPGSPV------------------QLMV------------------------VTNKFVKIYDLSQ 1941 (2233)
Q Consensus 1904 LeL~Leg~fIIKa~WLPGSQt------------------~LAV------------------------VT~~FVKIYDLS~ 1941 (2233)
=++.--..|+-.++.++..|- ++.+ ..-...|+||+-.
T Consensus 139 r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 139 RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred eeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 223323455555555553321 1110 0111223343322
Q ss_pred CCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEecccc
Q 047869 1942 DNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTY 2021 (2233)
Q Consensus 1942 D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl 2021 (2233)
- .-+-.|---+..|-.+.|+ ++| ..+.-=|++|-.-+.+|+-......+ .......+-.||-||-.=
T Consensus 219 ~--~c~qtF~ghesDINsv~ff--P~G-~afatGSDD~tcRlyDlRaD~~~a~y--------s~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 219 G--QCVQTFEGHESDINSVRFF--PSG-DAFATGSDDATCRLYDLRADQELAVY--------SHDSIICGITSVAFSKSG 285 (343)
T ss_pred c--ceeEeecccccccceEEEc--cCC-CeeeecCCCceeEEEeecCCcEEeee--------ccCcccCCceeEEEcccc
Confidence 2 1122333334455555554 344 34555566666666666532211111 122335567899999999
Q ss_pred ceeeEEecCCcEEE
Q 047869 2022 KLLFLSFQDGTTLV 2035 (2233)
Q Consensus 2022 ~LLF~SY~~G~Sf~ 2035 (2233)
++||..|.+++...
T Consensus 286 RlLfagy~d~~c~v 299 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNV 299 (343)
T ss_pred cEEEeeecCCceeE
Confidence 99999999988765
No 45
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=78.24 E-value=49 Score=41.84 Aligned_cols=171 Identities=18% Similarity=0.250 Sum_probs=86.9
Q ss_pred ccceecccCceEEEe-eCCeEEEEech--hhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccce
Q 047869 1811 KSLLSVSSRGRLAVG-EGDKVAIFDVG--QLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDC 1887 (2233)
Q Consensus 1811 RqLLSas~rGrLAVa-EgdKVTILqls--aLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC 1887 (2233)
=.+++.+..|.|||+ |.|.++|+|++ +++=++....+. .-....-.-..+-|.|+.+.. -..-.-+..||...=
T Consensus 89 vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~--~~~~~~~~vt~ieF~vm~~~~-D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 89 VTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF--LSKSSSSYVTSIEFSVMTLGG-DGYSSICLLVGTNSG 165 (395)
T ss_dssp EEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE-TT-SSSEEEEEEEEETTS
T ss_pred EeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccc--cccccccCeeEEEEEEEecCC-CcccceEEEEEeCCC
Confidence 356777899999999 99999999994 233222211100 000011111136677777632 112235777788777
Q ss_pred EEEEe----cCCCceeeeeeeeeccCCceEEEeEEe-------------------cC--CCceEEEEecCeEEEEeCcCC
Q 047869 1888 QVLTL----NPRGEVTDRLAIELALQGAYIRRVDWV-------------------PG--SPVQLMVVTNKFVKIYDLSQD 1942 (2233)
Q Consensus 1888 ~VLTf----ss~GeV~DRL~LeL~Leg~fIIKa~WL-------------------PG--SQt~LAVVT~~FVKIYDLS~D 1942 (2233)
.+++| +++|.-.-..+-.......-|+++.=+ +| -+..+.++|..-||||.+.+.
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~ 245 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS 245 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT--
T ss_pred CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC
Confidence 77666 455543332222221122222222222 11 123577888889999999987
Q ss_pred CCCCcEEEEcCCCCeeEEEEEE-e--cCCcEEEEEEecCCceEEEEec
Q 047869 1943 NISPLHYFTLPDDMIVDATLVI-A--SRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1943 ~lSPvyyF~LpsGkIrDaTfv~-~--e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
...-+.+ -.+...+++-+. . ..+...++.+..+|.+..--++
T Consensus 246 k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 246 KGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp -EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred cccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 7533333 333455544332 2 3466899999999999988776
No 46
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=77.37 E-value=1.9 Score=37.41 Aligned_cols=28 Identities=36% Similarity=0.774 Sum_probs=25.8
Q ss_pred ceEeeccCCCCCCceeehhhhhhhcCCCcEEE
Q 047869 1604 HWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVY 1635 (2233)
Q Consensus 1604 ~~Y~C~TC~l~~~~GVC~aCA~vCHkGHdVvy 1635 (2233)
.-|.|.+|.. .+|..|+..=|+||+++.
T Consensus 14 ~~~~C~~C~~----~~C~~C~~~~H~~H~~~~ 41 (42)
T PF00643_consen 14 LSLFCEDCNE----PLCSECTVSGHKGHKIVP 41 (42)
T ss_dssp EEEEETTTTE----EEEHHHHHTSTTTSEEEE
T ss_pred eEEEecCCCC----ccCccCCCCCCCCCEEeE
Confidence 6899999997 899999999999999875
No 47
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=76.70 E-value=66 Score=39.62 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=61.3
Q ss_pred EEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccC--CceEEEeEEecCCCceEEEEe-cC-eEEEEeCc
Q 047869 1865 EIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQ--GAYIRRVDWVPGSPVQLMVVT-NK-FVKIYDLS 1940 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Le--g~fIIKa~WLPGSQt~LAVVT-~~-FVKIYDLS 1940 (2233)
+|++++|||-| .=+|-|-+|-.|.-.|--|+- ..+.+-+ .+.|-.+.|.|..-..+.|-+ .| -||||||.
T Consensus 107 dVlsva~s~dn--~qivSGSrDkTiklwnt~g~c----k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 107 DVLSVAFSTDN--RQIVSGSRDKTIKLWNTLGVC----KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred ceEEEEecCCC--ceeecCCCcceeeeeeecccE----EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 58999999854 457889999999888877643 2333333 578999999999633333333 33 99999997
Q ss_pred CCCCCCcEEEEcCCCCeeEEEE
Q 047869 1941 QDNISPLHYFTLPDDMIVDATL 1962 (2233)
Q Consensus 1941 ~D~lSPvyyF~LpsGkIrDaTf 1962 (2233)
.=.+ .+.|.=-+|.+..+|+
T Consensus 181 ~~~l--~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 181 NCQL--RTTFIGHSGYVNTVTV 200 (315)
T ss_pred Ccch--hhccccccccEEEEEE
Confidence 5443 3344445666666665
No 48
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.03 E-value=14 Score=49.43 Aligned_cols=144 Identities=19% Similarity=0.300 Sum_probs=98.3
Q ss_pred EEEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCCceeee
Q 047869 1822 LAVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDR 1901 (2233)
Q Consensus 1822 LAVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DR 1901 (2233)
.+++|+|-+-++|+++ .+- ...|+| +.+ =.|.-+..+| |..|||-+| +|=.|..++-.| -|
T Consensus 193 ~s~~dsG~lqlWDlRq----p~r---~~~k~~----AH~---GpV~c~nwhP-nr~~lATGG-RDK~vkiWd~t~---~~ 253 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQ----PDR---CEKKLT----AHN---GPVLCLNWHP-NREWLATGG-RDKMVKIWDMTD---SR 253 (839)
T ss_pred EEecCCceEEEeeccC----chh---HHHHhh----ccc---CceEEEeecC-CCceeeecC-CCccEEEEeccC---CC
Confidence 5567889888888753 220 122222 111 1356788889 999999999 999999997775 22
Q ss_pred eeeeeccC-CceEEEeEEecCCCceEE---EEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEec
Q 047869 1902 LAIELALQ-GAYIRRVDWVPGSPVQLM---VVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSE 1977 (2233)
Q Consensus 1902 L~LeL~Le-g~fIIKa~WLPGSQt~LA---VVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS 1977 (2233)
.-.....+ ++-+-|+.|=|..+..|| .|.--.|.|||+....+ |-+.|.--.+.+.+++ | ++.....+.--|.
T Consensus 254 ~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-P~~t~~eH~~~vt~i~-W-~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 254 AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-PYATFLEHTDSVTGIA-W-DSGDRINLWSCSK 330 (839)
T ss_pred ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-cceeeeccCcccccee-c-cCCCceeeEeecC
Confidence 22223333 667999999999999998 45556999999998765 6677766565555554 3 2333556666788
Q ss_pred CCceEEEEec
Q 047869 1978 CGSLYRLELS 1987 (2233)
Q Consensus 1978 ~G~LY~Qels 1987 (2233)
+|-+|-+.+.
T Consensus 331 D~tv~qh~~k 340 (839)
T KOG0269|consen 331 DGTVLQHLFK 340 (839)
T ss_pred ccHHHHhhhh
Confidence 8988866554
No 49
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=72.92 E-value=33 Score=38.77 Aligned_cols=98 Identities=12% Similarity=0.224 Sum_probs=63.7
Q ss_pred EEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEec----CeEEEEeCcC
Q 047869 1866 IVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTN----KFVKIYDLSQ 1941 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~----~FVKIYDLS~ 1941 (2233)
|..++++|-.+.|.++.|..+..|--++.+|+.+-. ++...+..+.|=|..+. |+++.. -.|.|||..
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~------~~~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~- 133 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFS------FGTQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVR- 133 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEe------ecCCCceEEEECCCCCE-EEEEEccCCCcEEEEEECC-
Confidence 899999996666666669777777777776544432 23456677899999875 555542 259999998
Q ss_pred CCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEe
Q 047869 1942 DNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLS 1976 (2233)
Q Consensus 1942 D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLS 1976 (2233)
+..++..+..+ .+.++. ..++|++++...|
T Consensus 134 -~~~~i~~~~~~--~~t~~~--WsPdGr~~~ta~t 163 (194)
T PF08662_consen 134 -KKKKISTFEHS--DATDVE--WSPDGRYLATATT 163 (194)
T ss_pred -CCEEeeccccC--cEEEEE--EcCCCCEEEEEEe
Confidence 44455554433 344443 2578976655443
No 50
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=72.16 E-value=23 Score=48.19 Aligned_cols=118 Identities=15% Similarity=0.291 Sum_probs=74.7
Q ss_pred ceEEEEeecccCccceEEeecc-cceEEEEecCCCceeeee-eeeeccC---CceEEEeEEecCCCceEEEEecCeEEEE
Q 047869 1863 RFEIVHLAFNSIVENYLTVAGY-EDCQVLTLNPRGEVTDRL-AIELALQ---GAYIRRVDWVPGSPVQLMVVTNKFVKIY 1937 (2233)
Q Consensus 1863 pFeVlsLafNP~nEdyLAVcGL-kDC~VLTfss~GeV~DRL-~LeL~Le---g~fIIKa~WLPGSQt~LAVVT~~FVKIY 1937 (2233)
.=+|.+|.|+| +++||||.-. -.++|.-|. +|.+.--+ -+.+-.+ ..-+.+..|=|.+-+.+++-+-++||||
T Consensus 138 ~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 138 DAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred CCceeeeeEcC-CCCEEEEEecCceEEEEEcc-cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 34688999999 8899998754 345666663 33222211 1111122 3357899999999998888899999999
Q ss_pred eCcCCCCCCcEEEEcC--CCCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1938 DLSQDNISPLHYFTLP--DDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1938 DLS~D~lSPvyyF~Lp--sGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
+-. .-++.+.+..- +-++.|.++ .+.|+ ||-..+-+|.|-.=++.
T Consensus 216 ~r~--~we~~f~Lr~~~~ss~~~~~~w--sPnG~-YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 216 SRK--GWELQFKLRDKLSSSKFSDLQW--SPNGK-YIAASTLDGQILVWNVD 262 (933)
T ss_pred ccC--CceeheeecccccccceEEEEE--cCCCc-EEeeeccCCcEEEEecc
Confidence 754 44444444322 223556663 35674 67777778877764444
No 51
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=68.54 E-value=67 Score=42.79 Aligned_cols=154 Identities=18% Similarity=0.261 Sum_probs=101.3
Q ss_pred cCceEEE---eeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeeccc-ceEEEEec
Q 047869 1818 SRGRLAV---GEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYE-DCQVLTLN 1893 (2233)
Q Consensus 1818 ~rGrLAV---aEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLk-DC~VLTfs 1893 (2233)
+.-|+|| +-||+|.|+.++.=-+-.|.. +-.--=+--|..+..||-....|||++=. .+.+-++.
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv-----------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGV-----------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLT 658 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCccc-----------ccccccCceeeecccCCCChHHeeecccCceEEEEEec
Confidence 3457887 479999999997655555522 11222244578899999999999998732 34566676
Q ss_pred CCCceeeeeeeeecc--CCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcE
Q 047869 1894 PRGEVTDRLAIELAL--QGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKM 1970 (2233)
Q Consensus 1894 s~GeV~DRL~LeL~L--eg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~ 1970 (2233)
.+|--.-....+-.+ .++-|--++|=|=-.--||++..+ .|++|||..-..- .-|.=-.|.|-+.+ | ..+|+
T Consensus 659 a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~--~~l~gHtdqIf~~A-W-SpdGr- 733 (1012)
T KOG1445|consen 659 ANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY--SRLVGHTDQIFGIA-W-SPDGR- 733 (1012)
T ss_pred cCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh--heeccCcCceeEEE-E-CCCCc-
Confidence 666433222333223 267888999999887778888777 8999999865521 12222366777766 4 35675
Q ss_pred EEEEEecCCceEEEEec
Q 047869 1971 FLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1971 ~ILVLSS~G~LY~Qels 1987 (2233)
.+--.-.+|.|..++=.
T Consensus 734 ~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPR 750 (1012)
T ss_pred ceeeeecCceEEEeCCC
Confidence 44555689998876544
No 52
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=66.91 E-value=24 Score=42.70 Aligned_cols=75 Identities=21% Similarity=0.368 Sum_probs=59.6
Q ss_pred CceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecc
Q 047869 1910 GAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSV 1988 (2233)
Q Consensus 1910 g~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~ 1988 (2233)
+..+.+.+=-|. ...||++.++.|++||++..+-.|+-.|-.+..+|..+.|- .+| .-+.--|++|-+=+=+|+.
T Consensus 40 dsqVNrLeiTpd-k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~--~dg-rWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 40 DSQVNRLEITPD-KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ--CDG-RWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred ccceeeEEEcCC-cchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEe--ecC-eEEEecCCCceEEEEeccC
Confidence 444445554444 34699999999999999999999999999999999887764 456 5788888999888877763
No 53
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=63.97 E-value=1.1e+02 Score=36.65 Aligned_cols=149 Identities=18% Similarity=0.283 Sum_probs=92.7
Q ss_pred CceEEEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeec-ccceEEEEecCCCc
Q 047869 1819 RGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAG-YEDCQVLTLNPRGE 1897 (2233)
Q Consensus 1819 rGrLAVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcG-LkDC~VLTfss~Ge 1897 (2233)
.|+|+++-|.+|.++++. .+ + ++.+.+....++.|.+|.. .+|+++|.. .+=..++.++..+.
T Consensus 98 ~~~lv~~~g~~l~v~~l~-----~~-------~-~l~~~~~~~~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 98 NGRLVVAVGNKLYVYDLD-----NS-------K-TLLKKAFYDSPFYITSLSV---FKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp TTEEEEEETTEEEEEEEE-----TT-------S-SEEEEEEE-BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE
T ss_pred CCEEEEeecCEEEEEEcc-----Cc-------c-cchhhheecceEEEEEEec---cccEEEEEEcccCEEEEEEEccCC
Confidence 788999999999999982 22 1 6888888888999999987 577888776 47789999988543
Q ss_pred eeeeeeeeeccCCceEEEeEEecCCCceEEEEec-CeEEEEeCcCC---------CCCCcEEEEcCCCCeeEE---EEEE
Q 047869 1898 VTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTN-KFVKIYDLSQD---------NISPLHYFTLPDDMIVDA---TLVI 1964 (2233)
Q Consensus 1898 V~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~-~FVKIYDLS~D---------~lSPvyyF~LpsGkIrDa---Tfv~ 1964 (2233)
-...+.=+ .....+..+.-++... .++++.. ..+.++....+ .+.+...|-+.+ .|... ++..
T Consensus 162 ~l~~va~d--~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~-~v~~~~~~~l~~ 237 (321)
T PF03178_consen 162 KLILVARD--YQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGD-IVNSFRRGSLIP 237 (321)
T ss_dssp -EEEEEEE--SS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS--EEEEEE--SS-
T ss_pred EEEEEEec--CCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCC-ccceEEEEEeee
Confidence 22222111 1256788899995544 3433333 37777777643 344677787775 56555 3332
Q ss_pred ecCCc-----EEEEEEecCCceE-EEE-ec
Q 047869 1965 ASRGK-----MFLIVLSECGSLY-RLE-LS 1987 (2233)
Q Consensus 1965 ~e~G~-----~~ILVLSS~G~LY-~Qe-ls 1987 (2233)
...+. ..++..|.+|.|| ..+ ++
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~ 267 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVLIPFLS 267 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEEEE-E-
T ss_pred cCCCCcccccceEEEEecCCEEEEEEecCC
Confidence 21122 3588889999999 556 44
No 54
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=63.51 E-value=1.7e+02 Score=38.32 Aligned_cols=158 Identities=19% Similarity=0.308 Sum_probs=100.5
Q ss_pred EEEeecccCccceEEeecccc-eEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCC
Q 047869 1866 IVHLAFNSIVENYLTVAGYED-CQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDN 1943 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkD-C~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~ 1943 (2233)
|-+|.|-| +-..|.|||+.. ..|+-++ |.+.-+ .-.+-+.+--|.++...|+-+..++..+.. |.-+|||-...
T Consensus 216 I~sv~FHp-~~plllvaG~d~~lrifqvD--Gk~N~~-lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 216 ITSVQFHP-TAPLLLVAGLDGTLRIFQVD--GKVNPK-LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred ceEEEecC-CCceEEEecCCCcEEEEEec--CccChh-heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 45788866 788999999964 5577663 444443 334445666799999999988777766655 99999997776
Q ss_pred CCCcEEE-EcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccc
Q 047869 1944 ISPLHYF-TLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYK 2022 (2233)
Q Consensus 1944 lSPvyyF-~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~ 2022 (2233)
+.+..-. .++.-.++-..+ ...|. +|++--..||||.--.. + ..+...+ +++|.--.+.||.+-+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeV--Shd~~-fia~~G~~G~I~lLhak-T-----~eli~s~-----KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEV--SHDSN-FIAIAGNNGHIHLLHAK-T-----KELITSF-----KIEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccCCCCcccchhheeEe--cCCCC-eEEEcccCceEEeehhh-h-----hhhhhee-----eeccEEeeEEEecCCc
Confidence 6643311 111222333321 23443 66677777877743211 0 0011112 2344455678888889
Q ss_pred eeeEEecCCcEEEEEcCCC
Q 047869 2023 LLFLSFQDGTTLVGRLSPN 2041 (2233)
Q Consensus 2023 LLF~SY~~G~Sf~a~Ls~~ 2041 (2233)
.|.+|=..|+.+...|...
T Consensus 358 ~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred EEEEEcCCceEEEEecCCc
Confidence 9999999999999988544
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.89 E-value=63 Score=41.37 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=84.1
Q ss_pred eEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCC
Q 047869 1864 FEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDN 1943 (2233)
Q Consensus 1864 FeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~ 1943 (2233)
..|.-|.++| .++||+.||..||..+ .+-...|....-+.--|.-...+.|.|..+..++=-+.+.+--|||.-..
T Consensus 270 ~~V~yi~wSP-DdryLlaCg~~e~~~l---wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 270 QPVSYIMWSP-DDRYLLACGFDEVLSL---WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred CceEEEEECC-CCCeEEecCchHheee---ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 4567788988 8999999999999333 22222333333222236778999999999874333334455556665443
Q ss_pred CCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccce
Q 047869 1944 ISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKL 2023 (2233)
Q Consensus 1944 lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~L 2023 (2233)
+--=.+... -+|.|.++ +.+|+.. +.+.++-.|..-+.+-.-+-+ +. .-..+=-|..-|.+-++
T Consensus 346 ~~~W~gvr~--~~v~dlai--t~Dgk~v-l~v~~d~~i~l~~~e~~~dr~---------li--se~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 346 LGNWEGVRD--PKVHDLAI--TYDGKYV-LLVTVDKKIRLYNREARVDRG---------LI--SEEQPITSFSISKDGKL 409 (519)
T ss_pred hhccccccc--ceeEEEEE--cCCCcEE-EEEecccceeeechhhhhhhc---------cc--cccCceeEEEEcCCCcE
Confidence 222222222 25666663 3567644 444455555544333111111 01 11222345555666666
Q ss_pred eeEEecCCcEEEEEc
Q 047869 2024 LFLSFQDGTTLVGRL 2038 (2233)
Q Consensus 2024 LF~SY~~G~Sf~a~L 2038 (2233)
..++.++.+.++=.+
T Consensus 410 ~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDL 424 (519)
T ss_pred EEEEcccCeeEEeec
Confidence 666666666666544
No 56
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=62.12 E-value=48 Score=43.06 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=72.2
Q ss_pred hhcCcccccc-eecccCceEE-EeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEe
Q 047869 1804 LASGSLVKSL-LSVSSRGRLA-VGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTV 1881 (2233)
Q Consensus 1804 l~sGq~iRqL-LSas~rGrLA-VaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAV 1881 (2233)
+.+||.+|-+ -+-+.|-.|- +..+|-|+++|+.. +.. ....++ .-+||- -.|.|+|.||..||-
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g---~sp--~~~~~~-----~HsAP~----~gicfspsne~l~vs 226 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---MSP--IFHASE-----AHSAPC----RGICFSPSNEALLVS 226 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---CCc--ccchhh-----hccCCc----CcceecCCccceEEE
Confidence 3678888654 2233333343 35999999999832 111 111222 222222 278999999999999
Q ss_pred ecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEE
Q 047869 1882 AGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDAT 1961 (2233)
Q Consensus 1882 cGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaT 1961 (2233)
+|| ||.|.++..+ .-..+-...|..|- .|
T Consensus 227 VG~-Dkki~~yD~~---------------------------------------------s~~s~~~l~y~~Pl-----st 255 (673)
T KOG4378|consen 227 VGY-DKKINIYDIR---------------------------------------------SQASTDRLTYSHPL-----ST 255 (673)
T ss_pred ecc-cceEEEeecc---------------------------------------------cccccceeeecCCc-----ce
Confidence 997 4666655433 33333333444443 12
Q ss_pred EEEecCCcEEEEEEecCCceEEEEecc
Q 047869 1962 LVIASRGKMFLIVLSECGSLYRLELSV 1988 (2233)
Q Consensus 1962 fv~~e~G~~~ILVLSS~G~LY~Qels~ 1988 (2233)
+-+-+.| .++.+=++.|.||..+|+.
T Consensus 256 vaf~~~G-~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 256 VAFSECG-TYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eeecCCc-eEEEeecCCceEEEEeccc
Confidence 3334667 6888899999999999984
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=61.90 E-value=4.2e+02 Score=33.46 Aligned_cols=108 Identities=15% Similarity=0.244 Sum_probs=57.2
Q ss_pred EEEEeecccCccceEEeecccc--eEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEe--cCeEEEEeCc
Q 047869 1865 EIVHLAFNSIVENYLTVAGYED--CQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT--NKFVKIYDLS 1940 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLkD--C~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT--~~FVKIYDLS 1940 (2233)
.|.+.+++| ++++||.++..+ -+|..++-.+.-..++ . ..+| ......|-|..+. ||++. ...++||.+.
T Consensus 205 ~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l--~-~~~g-~~~~~~wSPDG~~-La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 205 PLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV--A-SFRG-HNGAPAFSPDGSR-LAFASSKDGVLNIYVMG 278 (429)
T ss_pred ccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE--e-cCCC-ccCceeECCCCCE-EEEEEecCCcEEEEEEE
Confidence 367899999 788999887642 4455554433211111 1 1222 2235789998765 55443 3467777554
Q ss_pred CCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCce
Q 047869 1941 QDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSL 1981 (2233)
Q Consensus 1941 ~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~L 1981 (2233)
.+.-.+ -.+..+.-.+....+.++|+.++++....|..
T Consensus 279 ~~~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~ 316 (429)
T PRK01742 279 ANGGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSP 316 (429)
T ss_pred CCCCCe---EeeccCCCCcCCEEECCCCCEEEEEECCCCCc
Confidence 433222 12333332233334457787666665556643
No 58
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.66 E-value=29 Score=43.65 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=58.8
Q ss_pred EEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcC----CCCeeEEEE
Q 047869 1888 QVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLP----DDMIVDATL 1962 (2233)
Q Consensus 1888 ~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~Lp----sGkIrDaTf 1962 (2233)
.|..+|.+|...-++..+. .-|+.+.|-.. . +|.||+.+ +|+|||+--.. .|.++ ..+|.++-+
T Consensus 62 ~I~iys~sG~ll~~i~w~~----~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~G~~-----~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS----GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLFGEF-----QFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEEECCCCCEeEEEEECC----CCEEEEEECCC-C-eEEEEEcCCEEEEEeCCCce-----eechhhhccccCcccccc
Confidence 5778899999888865544 68999999774 4 45555555 99999986433 45544 345667744
Q ss_pred EEecCCcEEEEEEecCCceEEE
Q 047869 1963 VIASRGKMFLIVLSECGSLYRL 1984 (2233)
Q Consensus 1963 v~~e~G~~~ILVLSS~G~LY~Q 1984 (2233)
...+.+..=++||++++.+|.-
T Consensus 131 ~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 131 FAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred cccccCCCCEEEECCCCeEEEE
Confidence 3333333347888999999953
No 59
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=61.39 E-value=33 Score=45.23 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=84.5
Q ss_pred eEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeecc--CCceEEEeEEecCCCceEEEEecC-eEEEEeCc
Q 047869 1864 FEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELAL--QGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLS 1940 (2233)
Q Consensus 1864 FeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~L--eg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS 1940 (2233)
=.|..|.+||-.+.++..|| |=.|-.++..= +...-+.+ .-+|+-.+.|=|.+.+.+|++..+ .+-||||-
T Consensus 399 g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~----~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDV----IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred cceEeeecCCCccceeeeec--cceeEeccccC----CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 35778999999999999999 55554443220 11122222 367899999999999999999866 99999999
Q ss_pred CCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1941 QDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1941 ~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
.+..-|+-.-.+- +.+....++ ...| ..+.+-...|.+++-+++
T Consensus 473 ~~~~~Pv~s~~~~-~~~l~~~~~-s~~g-~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC-SPALTRVRW-SPNG-KLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccCCccccccc-ccccceeec-CCCC-cEEEEecCCCcEEEEEcC
Confidence 9999998876555 344444444 3445 588889999999988885
No 60
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.33 E-value=71 Score=41.11 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=24.9
Q ss_pred cccccccccccceEEEEeecccCccceEEeecccceEEEE
Q 047869 1852 TNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLT 1891 (2233)
Q Consensus 1852 lTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLT 1891 (2233)
+.++.+++..+. .-+|.+|| |+++++|||-.+-.|+|
T Consensus 23 l~~k~lg~~~~~--p~~ls~np-ngr~v~V~g~geY~iyt 59 (443)
T PF04053_consen 23 LSVKELGSCEIY--PQSLSHNP-NGRFVLVCGDGEYEIYT 59 (443)
T ss_dssp ---EEEEE-SS----SEEEE-T-TSSEEEEEETTEEEEEE
T ss_pred EEeccCCCCCcC--CeeEEECC-CCCEEEEEcCCEEEEEE
Confidence 334445544333 55888899 99999999999999999
No 61
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=57.38 E-value=7.4e+02 Score=34.86 Aligned_cols=196 Identities=17% Similarity=0.191 Sum_probs=118.9
Q ss_pred ccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCCceeeee------eeeeccC-CceEEEeEEecC
Q 047869 1849 ADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRL------AIELALQ-GAYIRRVDWVPG 1921 (2233)
Q Consensus 1849 kdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL------~LeL~Le-g~fIIKa~WLPG 1921 (2233)
..|+++--.| .++|=+|..|+. ..+|--|+-.+++.+++. |.++.|. .|++.+. |.
T Consensus 63 ~~kl~ll~vs-~~lp~~I~alas---~~~~vy~A~g~~i~~~~r---gk~i~~~~~~~~a~v~~l~~fGe---------- 125 (910)
T KOG1539|consen 63 VNKLNLLFVS-KPLPDKITALAS---DKDYVYVASGNKIYAYAR---GKHIRHTTLLHGAKVHLLLPFGE---------- 125 (910)
T ss_pred ccceEEEEec-CCCCCceEEEEe---cCceEEEecCcEEEEEEc---cceEEEEeccccceEEEEeeecc----------
Confidence 3556665555 688889999977 889999999999999876 4334432 2222222 33
Q ss_pred CCceEEEEecCeEEEEeCcCCCCCCcEE---EEcCCCC-eeEEEEEEec-CCcEEEEEEecCCceEEEEecccCCCcccc
Q 047869 1922 SPVQLMVVTNKFVKIYDLSQDNISPLHY---FTLPDDM-IVDATLVIAS-RGKMFLIVLSECGSLYRLELSVEGNVGATP 1996 (2233)
Q Consensus 1922 SQt~LAVVT~~FVKIYDLS~D~lSPvyy---F~LpsGk-IrDaTfv~~e-~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ 1996 (2233)
..+|+.+.+-+.||+.+.. ..|.|. |.=-+|+ |+. +..+ .=-+-|+|-|++|.+-.-++...--. +.
T Consensus 126 --~lia~d~~~~l~vw~~s~~-~~e~~l~~~~~~~~~~~Ita---l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v--~~ 197 (910)
T KOG1539|consen 126 --HLIAVDISNILFVWKTSSI-QEELYLQSTFLKVEGDFITA---LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVV--YT 197 (910)
T ss_pred --eEEEEEccCcEEEEEeccc-cccccccceeeeccCCceee---EecchhheeeEEEeecCCcEEEEEeccCcEE--EE
Confidence 3589999999999999886 444332 3333444 332 2222 22235677789998887777632111 11
Q ss_pred ceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEEEcCCCcccccceeEEEEccCCCCCCCcccceeeccCCCce
Q 047869 1997 LKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSPNAASLSEVSYVFEEQDGKLRSAGLHRWKELLASSGL 2076 (2233)
Q Consensus 1997 ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls~~~~sv~eis~Vfe~~~gk~~~a~L~qWsEV~~hPGL 2076 (2233)
..++ ..+=-++-=|+.++.+=+...+|+..+.++..+. +-..|..+ | |=
T Consensus 198 f~~~--------~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk-----il~sFk~d-----------~-------g~ 246 (910)
T KOG1539|consen 198 FQEF--------FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK-----ILMSFKQD-----------W-------GR 246 (910)
T ss_pred eccc--------ccceeEeccCCcceEEEEeccCceEEEEEcccCc-----EEEEEEcc-----------c-------cc
Confidence 1111 1112234557779999999999999999986553 22223221 3 33
Q ss_pred EEEEeccCCCceEEEEecCCc-eee
Q 047869 2077 FFCFSSLKSNAAVAVSLGTNE-LIA 2100 (2233)
Q Consensus 2077 f~cls~~~sn~pvvv~l~pd~-I~i 2100 (2233)
+..+|-.++|+|+...=++.. +.+
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEE
Confidence 466677777777777766633 444
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=57.23 E-value=5.3e+02 Score=33.13 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=125.8
Q ss_pred eecccCccceEEeecccceEEEEecC-CCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCc
Q 047869 1869 LAFNSIVENYLTVAGYEDCQVLTLNP-RGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPL 1947 (2233)
Q Consensus 1869 LafNP~nEdyLAVcGLkDC~VLTfss-~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPv 1947 (2233)
+.|.| ++++|| .+-.+-.|..++. .+. +++..++.-....|..+.|=|..+..+...--..+||||+ .+...=+
T Consensus 165 ~~fs~-~g~~l~-~~~~~~~i~~~~~~~~~--~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~-~~~~~~~ 239 (456)
T KOG0266|consen 165 VDFSP-DGRALA-AASSDGLIRIWKLEGIK--SNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL-KDDGRNL 239 (456)
T ss_pred EEEcC-CCCeEE-EccCCCcEEEeeccccc--chhhccccccccceeeeEECCCCcEEEEecCCceEEEeec-cCCCeEE
Confidence 66766 666644 4444444444444 221 1222233222667999999999984333333349999999 3333333
Q ss_pred EEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEE
Q 047869 1948 HYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLS 2027 (2233)
Q Consensus 1948 yyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~S 2027 (2233)
..+.=-+..|.+++| ...| ..++--|.+|.+++=++.. + .....+ .+. .++..++.++.+-+.|-.+
T Consensus 240 ~~l~gH~~~v~~~~f--~p~g-~~i~Sgs~D~tvriWd~~~-~-----~~~~~l--~~h--s~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAF--SPDG-NLLVSGSDDGTVRIWDVRT-G-----ECVRKL--KGH--SDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEecCCCCceEEEEe--cCCC-CEEEEecCCCcEEEEeccC-C-----eEEEee--ecc--CCceEEEEECCCCCEEEEc
Confidence 444434556766664 4677 7888999999999888873 1 111111 111 2234447888888887777
Q ss_pred ecCCcEEEEEcCCCcccccceeEEEEccCCCCC-CCcccceeeccCCCceEEEEeccCCCceEEEEecCCceeeeccccc
Q 047869 2028 FQDGTTLVGRLSPNAASLSEVSYVFEEQDGKLR-SAGLHRWKELLASSGLFFCFSSLKSNAAVAVSLGTNELIAQNMRHA 2106 (2233)
Q Consensus 2028 Y~~G~Sf~a~Ls~~~~sv~eis~Vfe~~~gk~~-~a~L~qWsEV~~hPGLf~cls~~~sn~pvvv~l~pd~I~iQeiK~~ 2106 (2233)
=.+|...+--+.... .. .+.+..+.... +-..++|+ +.|.+.-... .++-+.+.--...-.++..+-.
T Consensus 307 s~d~~i~vwd~~~~~--~~---~~~~~~~~~~~~~~~~~~fs----p~~~~ll~~~--~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGS--KL---CLKLLSGAENSAPVTSVQFS----PNGKYLLSAS--LDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred CCCccEEEEECCCCc--ee---eeecccCCCCCCceeEEEEC----CCCcEEEEec--CCCeEEEEEccCCcceeeeccc
Confidence 446666554442221 00 11111111111 22233333 4455444222 3444444332222222222221
Q ss_pred cCCCCCeEEEEEeecCC-CCCeEEEEEeeCCceeEEec
Q 047869 2107 AGSTSPLVGVTAYKPLS-KDKVHCLVLHDDGSLQIYSH 2143 (2233)
Q Consensus 2107 ~~sSs~vdgva~y~p~s-~~rttlLLLcEDGSLrIYsa 2143 (2233)
.. . ...++++.. .+...++.=.+||++.+|.-
T Consensus 376 ~~--~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 376 SN--L---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred CC--c---ceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 11 1 134555553 35666788999999999983
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.82 E-value=38 Score=41.17 Aligned_cols=93 Identities=20% Similarity=0.396 Sum_probs=61.8
Q ss_pred eEEEEeecccCccceEEee--------cccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eE
Q 047869 1864 FEIVHLAFNSIVENYLTVA--------GYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FV 1934 (2233)
Q Consensus 1864 FeVlsLafNP~nEdyLAVc--------GLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FV 1934 (2233)
|-=-++.|+|-.+++|||+ |--.-+||.++..+.+.+-...+. .+|-| .+.|-+....+++++.-+ .+
T Consensus 9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~-~D~Lf--dV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT-EDGLF--DVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred cccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec-cccee--EeeecCCCcceEEEEecCceE
Confidence 4456899999999999996 555667777763333332222111 12444 888999998888777766 99
Q ss_pred EEEeCcCCCCCCcEEEEcCCCCeeEE
Q 047869 1935 KIYDLSQDNISPLHYFTLPDDMIVDA 1960 (2233)
Q Consensus 1935 KIYDLS~D~lSPvyyF~LpsGkIrDa 1960 (2233)
||||+...+ .|.+-|.=-.-.|-.+
T Consensus 86 rl~d~~~~s-~Pi~~~kEH~~EV~Sv 110 (311)
T KOG0277|consen 86 RLFDLTMPS-KPIHKFKEHKREVYSV 110 (311)
T ss_pred EEeccCCCC-cchhHHHhhhhheEEe
Confidence 999977665 4777665444444433
No 64
>smart00336 BBOX B-Box-type zinc finger.
Probab=55.52 E-value=7.7 Score=33.14 Aligned_cols=30 Identities=40% Similarity=0.825 Sum_probs=25.3
Q ss_pred ccceEeeccCCCCCCceeehhhhhhhcCCCcEEE
Q 047869 1602 EQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVY 1635 (2233)
Q Consensus 1602 ~Q~~Y~C~TC~l~~~~GVC~aCA~vCHkGHdVvy 1635 (2233)
+..+|.|.||.. .+|..|...-|+||.++.
T Consensus 12 ~~~~~~C~~c~~----~iC~~C~~~~H~~H~~~~ 41 (42)
T smart00336 12 EPAEFFCEECGA----LLCRTCDEAEHRGHTVVL 41 (42)
T ss_pred CceEEECCCCCc----ccccccChhhcCCCceec
Confidence 444888999886 799999988999999864
No 65
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=55.29 E-value=3.9e+02 Score=30.99 Aligned_cols=142 Identities=21% Similarity=0.247 Sum_probs=88.8
Q ss_pred cccCceEEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecC
Q 047869 1816 VSSRGRLAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNP 1894 (2233)
Q Consensus 1816 as~rGrLAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss 1894 (2233)
+..+.+|+|+ |+| +-+++. ++. .....+..+.+ |.+|+..|.-+-.|+++| +..+++.++.
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~----~~~------~~~~~i~~~~~------I~ql~vl~~~~~llvLsd-~~l~~~~L~~ 65 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDL----SDP------SKPTRILKLSS------ITQLSVLPELNLLLVLSD-GQLYVYDLDS 65 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEe----cCC------ccceeEeecce------EEEEEEecccCEEEEEcC-CccEEEEchh
Confidence 4557789998 655 777777 111 12222222222 999999999999999999 8888888744
Q ss_pred CCceeeee----------eeeecc-CCceEEE-eEEecCCCceEEEEecCeEEEEeCcCC--CC-CCcEEEEcCCCCeeE
Q 047869 1895 RGEVTDRL----------AIELAL-QGAYIRR-VDWVPGSPVQLMVVTNKFVKIYDLSQD--NI-SPLHYFTLPDDMIVD 1959 (2233)
Q Consensus 1895 ~GeV~DRL----------~LeL~L-eg~fIIK-a~WLPGSQt~LAVVT~~FVKIYDLS~D--~l-SPvyyF~LpsGkIrD 1959 (2233)
=.....+- ...+.. .|....+ .... .....|+|+....|.||....+ .. ....+|.+| +.+.+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~-~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~ 143 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH-EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSS 143 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeecccc-ccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEE
Confidence 33333211 011111 1322222 2333 3446689999999999999985 33 578889999 58899
Q ss_pred EEEEEecCCcEEEEEEecCCceE
Q 047869 1960 ATLVIASRGKMFLIVLSECGSLY 1982 (2233)
Q Consensus 1960 aTfv~~e~G~~~ILVLSS~G~LY 1982 (2233)
.++. + ..++|.++.||..
T Consensus 144 i~~~----~-~~i~v~~~~~f~~ 161 (275)
T PF00780_consen 144 IAFL----G-NKICVGTSKGFYL 161 (275)
T ss_pred EEEe----C-CEEEEEeCCceEE
Confidence 9877 3 3455555666443
No 66
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=51.84 E-value=4.3e+02 Score=33.89 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=76.8
Q ss_pred EEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceE-EEeEEecCCCceEEEEecCeEEEEeCcCCC
Q 047869 1865 EIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYI-RRVDWVPGSPVQLMVVTNKFVKIYDLSQDN 1943 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fI-IKa~WLPGSQt~LAVVT~~FVKIYDLS~D~ 1943 (2233)
+|.+|.|.+....+.+.-.--|+-|++|+.+..-..+ ...+.++-.+- ....|-|+ .-+.|-|.+..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNR-EQPPDLDYNFRRFSLNNSPG----------KLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-----------SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCcc-CCCcccCcccccccccCCCc----------ceEEehhhCCcc
Confidence 5677888888888988888899999999766443311 11111110000 00000011 123334433333
Q ss_pred ----CCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeec--ccccccCCeEEEEe
Q 047869 1944 ----ISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQF--NDREIHAKGLSLYF 2017 (2233)
Q Consensus 1944 ----lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~--~~~q~~~~GVSVyY 2017 (2233)
+-|.+.+-.-.|.|..... ..-| ++-|-.++|.|-.=+++ ..++..++.+.. ........--++.|
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~--S~iG--Fvaigy~~G~l~viD~R----GPavI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKN--SDIG--FVAIGYESGSLVVIDLR----GPAVIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE---BTS--EEEEEETTSEEEEEETT----TTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred cccccCchhheeccCCcEeEEec--CCCc--EEEEEecCCcEEEEECC----CCeEEeeccccccccccccccCeeEEEE
Confidence 4588888888888877663 2335 77788888888777775 111222222222 11111111223433
Q ss_pred c--------cccceeeEEecCCcEEEEEcCC
Q 047869 2018 S--------STYKLLFLSFQDGTTLVGRLSP 2040 (2233)
Q Consensus 2018 S--------~tl~LLF~SY~~G~Sf~a~Ls~ 2040 (2233)
+ ...-.||+.++.|+.++-++.+
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 3 2346899999999999998865
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.66 E-value=1.5e+02 Score=38.35 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred cccccceecccCceEEEeeC---CeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecc
Q 047869 1808 SLVKSLLSVSSRGRLAVGEG---DKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGY 1884 (2233)
Q Consensus 1808 q~iRqLLSas~rGrLAVaEg---dKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGL 1884 (2233)
.+=.-+|+++.+|..|.... ..+|+.+. + .-..++-+.+|-| +-.|-+.|.
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~--------------~----------~s~v~~ts~~fHp--DgLifgtgt 366 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSD--------------E----------TSDVEYTSAAFHP--DGLIFGTGT 366 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEee--------------c----------cccceeEEeeEcC--CceEEeccC
Confidence 33455788999999887632 22222211 0 0123455778877 456777888
Q ss_pred cceEEEEec-CCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCe-EEEEeCcCCCCCCcEEEEcCCCCeeEEEE
Q 047869 1885 EDCQVLTLN-PRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKF-VKIYDLSQDNISPLHYFTLPDDMIVDATL 1962 (2233)
Q Consensus 1885 kDC~VLTfs-s~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~F-VKIYDLS~D~lSPvyyF~LpsGkIrDaTf 1962 (2233)
.|-.|=.++ +++..+-+...| ..-|.-+.. ...-+-||+++.|- ||+|||-++..=| .|.+++++ .-.++
T Consensus 367 ~d~~vkiwdlks~~~~a~Fpgh----t~~vk~i~F-sENGY~Lat~add~~V~lwDLRKl~n~k--t~~l~~~~-~v~s~ 438 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFPGH----TGPVKAISF-SENGYWLATAADDGSVKLWDLRKLKNFK--TIQLDEKK-EVNSL 438 (506)
T ss_pred CCceEEEEEcCCccccccCCCC----CCceeEEEe-ccCceEEEEEecCCeEEEEEehhhcccc--eeeccccc-cceeE
Confidence 876654442 222222222111 111222221 12223489999997 9999999999544 56778776 55566
Q ss_pred EEecCCcEEEEEEecCCceEE
Q 047869 1963 VIASRGKMFLIVLSECGSLYR 1983 (2233)
Q Consensus 1963 v~~e~G~~~ILVLSS~G~LY~ 1983 (2233)
-++..|++.++- +++=++|.
T Consensus 439 ~fD~SGt~L~~~-g~~l~Vy~ 458 (506)
T KOG0289|consen 439 SFDQSGTYLGIA-GSDLQVYI 458 (506)
T ss_pred EEcCCCCeEEee-cceeEEEE
Confidence 667889755444 67667774
No 68
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=51.06 E-value=9.8e+02 Score=34.42 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=69.1
Q ss_pred EEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccC--CceEEEeEEecCCCceEEEEecCeEEEEeCcCCC
Q 047869 1866 IVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQ--GAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDN 1943 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Le--g~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~ 1943 (2233)
.++--+++..++||.|.=..|=.||.++.. +.+-.-..+.-+ ..| +-=+-|.| |+=||+.+|++||=+
T Consensus 409 ~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e--~ee~~~~gf~~~~~Tif---~S~i~g~~--lvQvTs~~iRl~ss~--- 478 (1096)
T KOG1897|consen 409 SLKSMVDENYDNYLVLSFISETRVLNISEE--VEETEDPGFSTDEQTIF---CSTINGNQ--LVQVTSNSIRLVSSA--- 478 (1096)
T ss_pred EeeccccccCCcEEEEEeccceEEEEEccc--eEEeccccccccCceEE---EEccCCce--EEEEecccEEEEcch---
Confidence 334447788888999999999999999877 333322222221 223 22333443 788999999999976
Q ss_pred CCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccC
Q 047869 1944 ISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEG 1990 (2233)
Q Consensus 1944 lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~ 1990 (2233)
-.-.+-.|++++.=..... ....|+|...+|.+|+.++.+.+
T Consensus 479 --~~~~~W~~p~~~ti~~~~~---n~sqVvvA~~~~~l~y~~i~~~~ 520 (1096)
T KOG1897|consen 479 --GLRSEWRPPGKITIGVVSA---NASQVVVAGGGLALFYLEIEDGG 520 (1096)
T ss_pred --hhhhcccCCCceEEEEEee---cceEEEEecCccEEEEEEeeccc
Confidence 1223445555554333222 23478888888888888776443
No 69
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=50.37 E-value=6.7e+02 Score=32.26 Aligned_cols=162 Identities=18% Similarity=0.188 Sum_probs=103.1
Q ss_pred cccceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccC-CceEEEeEEecCCCceEEEEecC-eEEEE
Q 047869 1860 NIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQ-GAYIRRVDWVPGSPVQLMVVTNK-FVKIY 1937 (2233)
Q Consensus 1860 a~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Le-g~fIIKa~WLPGSQt~LAVVT~~-FVKIY 1937 (2233)
..=...|-.++|.|... ..|.|-.|-.|-.+... .+...+.--.. .+||..+.+-|.+ .+++-...| -||||
T Consensus 200 ~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~---~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK---DDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIW 273 (456)
T ss_pred cccccceeeeEECCCCc--EEEEecCCceEEEeecc---CCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEE
Confidence 33456788999988665 66677777776666441 22122222223 6789999999999 666666666 99999
Q ss_pred eCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEe
Q 047869 1938 DLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYF 2017 (2233)
Q Consensus 1938 DLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyY 2017 (2233)
|+-. -.++--+..-++.|..+.| ..+|+ .++..|.+|.|.+=++...... -+.+....... . ---++.+
T Consensus 274 d~~~--~~~~~~l~~hs~~is~~~f--~~d~~-~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~--~-~~~~~~f 342 (456)
T KOG0266|consen 274 DVRT--GECVRKLKGHSDGISGLAF--SPDGN-LLVSASYDGTIRVWDLETGSKL---CLKLLSGAENS--A-PVTSVQF 342 (456)
T ss_pred eccC--CeEEEeeeccCCceEEEEE--CCCCC-EEEEcCCCccEEEEECCCCcee---eeecccCCCCC--C-ceeEEEE
Confidence 9988 3455555556777776664 46675 5555588999998887733211 11111111111 0 2456888
Q ss_pred ccccceeeEEecCCcEEEEEc
Q 047869 2018 SSTYKLLFLSFQDGTTLVGRL 2038 (2233)
Q Consensus 2018 S~tl~LLF~SY~~G~Sf~a~L 2038 (2233)
|+.-..|+..+.+++-=+=.+
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEc
Confidence 999999999988877655444
No 70
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=50.26 E-value=44 Score=41.24 Aligned_cols=117 Identities=23% Similarity=0.378 Sum_probs=77.8
Q ss_pred CceEE-EeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCC--
Q 047869 1819 RGRLA-VGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPR-- 1895 (2233)
Q Consensus 1819 rGrLA-VaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~-- 1895 (2233)
++..| |+..|.|-+|+++.|=--.- .+.+--+ .-..++++.|+...+|+|-.+-.-+.|..+.=+
T Consensus 209 ~~~FASvgaDGSvRmFDLR~leHSTI---IYE~p~~---------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 209 RDVFASVGADGSVRMFDLRSLEHSTI---IYEDPSP---------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred cceEEEecCCCcEEEEEecccccceE---EecCCCC---------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence 33444 78999999999987643222 2333222 223478999999999999887776666555221
Q ss_pred CceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCC----CCcEEEE
Q 047869 1896 GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNI----SPLHYFT 1951 (2233)
Q Consensus 1896 GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~l----SPvyyF~ 1951 (2233)
+.. +.+|+--++-+.-+.|-|+|..-|.-+..+ .+-||||.+-.- .|..-|+
T Consensus 277 ~tp----va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~ 333 (364)
T KOG0290|consen 277 CTP----VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT 333 (364)
T ss_pred Ccc----eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh
Confidence 111 223333367788999999999999877777 788999987543 3444444
No 71
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=50.23 E-value=11 Score=31.89 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=24.2
Q ss_pred cceEeeccCCCCCCceeehhhhhhhcCCCcEEE
Q 047869 1603 QHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVY 1635 (2233)
Q Consensus 1603 Q~~Y~C~TC~l~~~~GVC~aCA~vCHkGHdVvy 1635 (2233)
...|.|.+|.. .+|..|...=|+||.++.
T Consensus 10 ~~~~fC~~~~~----~iC~~C~~~~H~~H~~~~ 38 (39)
T cd00021 10 PLSLFCETDRA----LLCVDCDLSVHSGHRRVP 38 (39)
T ss_pred ceEEEeCccCh----hhhhhcChhhcCCCCEee
Confidence 44889999887 799999866699999875
No 72
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=50.20 E-value=6.3e+02 Score=31.91 Aligned_cols=132 Identities=21% Similarity=0.337 Sum_probs=72.1
Q ss_pred eeCCeEEEEechhhhcccccCCccccccccccccccccceEE-EEeecccCccceEEeecccceEEEEec-CCCceeeee
Q 047869 1825 GEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEI-VHLAFNSIVENYLTVAGYEDCQVLTLN-PRGEVTDRL 1902 (2233)
Q Consensus 1825 aEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeV-lsLafNP~nEdyLAVcGLkDC~VLTfs-s~GeV~DRL 1902 (2233)
.+.++|+|++... .+.+++-+.+..+ .+++|.| +++|+.|++ +|..|--++ .+++++.++
T Consensus 13 ~~~~~v~viD~~t----------------~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~-rdg~vsviD~~~~~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGAT----------------NKVVARIPTGGAPHAGLKFSP-DGRYLYVAN-RDGTVSVIDLATGKVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-----------------SEEEEEE-STTEEEEEE-TT--SSEEEEEE-TTSEEEEEETTSSSEEEEE
T ss_pred cCCCEEEEEECCC----------------CeEEEEEcCCCCceeEEEecC-CCCEEEEEc-CCCeEEEEECCcccEEEEE
Confidence 4678999888622 2223444444444 3456655 888999998 566666664 356677776
Q ss_pred ee-------eeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCC-----CCeeEEEEEEecCCcE
Q 047869 1903 AI-------ELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPD-----DMIVDATLVIASRGKM 1970 (2233)
Q Consensus 1903 ~L-------eL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~Lps-----GkIrDaTfv~~e~G~~ 1970 (2233)
.+ ...-+|.|+.=+-|.|+ .|.|+|... +.|+....... ..=|-++++....+..
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v~n~~~~-----------~v~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYVANYEPG-----------TVSVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEEEEEETT-----------EEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred ecCCCcceEEEcCCCCEEEEEecCCC-----------ceeEecccc--ccceeecccccccccccCCCceeEEecCCCCE
Confidence 44 22224556555555555 455666532 44444332221 1124566666666777
Q ss_pred EEEEEecCCceEEEEec
Q 047869 1971 FLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1971 ~ILVLSS~G~LY~Qels 1987 (2233)
+++-+-+.|.|+.=+.+
T Consensus 142 fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEEccCCeEEEEEec
Confidence 88888899999866555
No 73
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=49.77 E-value=4.7e+02 Score=30.33 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=87.5
Q ss_pred cccceecccCceEEEeeCCeEEEEechhhhcccccCCcccccc----ccccccccccceEEEEeecccCccceEEeeccc
Q 047869 1810 VKSLLSVSSRGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKT----NVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYE 1885 (2233)
Q Consensus 1810 iRqLLSas~rGrLAVaEgdKVTILqlsaLLkQad~s~~skdKl----TLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLk 1885 (2233)
|+|+..+..-+.+.|--++.+.++++..+-......+..+.|. ..-+..+..--|. ..--+....+|+|+==+
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~---~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFA---VNGGHEGSRRLCVAVKK 114 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEe---eccccccceEEEEEECC
Confidence 8888888888888877779999999999987765332222222 1122333333333 22346677888888888
Q ss_pred ceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcE
Q 047869 1886 DCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLH 1948 (2233)
Q Consensus 1886 DC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvy 1948 (2233)
..+|+++..+..-..+..-|..++ .-+..+.|. ...+.|.+.+-.-++|+...+..+.+
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~---~~~i~v~~~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL---GNKICVGTSKGFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcC-CCcEEEEEe---CCEEEEEeCCceEEEecCCCCceEEe
Confidence 999999977421110233333343 457788899 33689999999999999976665554
No 74
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=47.16 E-value=6.6e+02 Score=31.29 Aligned_cols=198 Identities=18% Similarity=0.219 Sum_probs=114.8
Q ss_pred ceeccc-CceEEEeeCCeEEEEechhhhcccccCCccccccccccccccc-cceEEEEeecccCccceEEeecccceEEE
Q 047869 1813 LLSVSS-RGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNI-VRFEIVHLAFNSIVENYLTVAGYEDCQVL 1890 (2233)
Q Consensus 1813 LLSas~-rGrLAVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~-VpFeVlsLafNP~nEdyLAVcGLkDC~VL 1890 (2233)
.|++.+ ++.||++-..+|-++|++.-=-+ |+.+-. ..--|..+.| .+.++ --+-|=+||.|=
T Consensus 45 rLeiTpdk~~LAaa~~qhvRlyD~~S~np~--------------Pv~t~e~h~kNVtaVgF-~~dgr-WMyTgseDgt~k 108 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQHVRLYDLNSNNPN--------------PVATFEGHTKNVTAVGF-QCDGR-WMYTGSEDGTVK 108 (311)
T ss_pred eEEEcCCcchhhhccCCeeEEEEccCCCCC--------------ceeEEeccCCceEEEEE-eecCe-EEEecCCCceEE
Confidence 455554 56689999999999998532111 111111 1133445555 33333 234455665554
Q ss_pred EecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCC--eeEEEEEEecC
Q 047869 1891 TLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDM--IVDATLVIASR 1967 (2233)
Q Consensus 1891 Tfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGk--IrDaTfv~~e~ 1967 (2233)
.+.=+--...|+ .+. ..-|..+. +--.|++|.+-++. .|+||||-.+..+ .=++|++. |+..|+. ++
T Consensus 109 IWdlR~~~~qR~---~~~-~spVn~vv-lhpnQteLis~dqsg~irvWDl~~~~c~---~~liPe~~~~i~sl~v~--~d 178 (311)
T KOG0315|consen 109 IWDLRSLSCQRN---YQH-NSPVNTVV-LHPNQTELISGDQSGNIRVWDLGENSCT---HELIPEDDTSIQSLTVM--PD 178 (311)
T ss_pred EEeccCcccchh---ccC-CCCcceEE-ecCCcceEEeecCCCcEEEEEccCCccc---cccCCCCCcceeeEEEc--CC
Confidence 443332111111 000 12244443 34459999887776 9999999988654 23456554 6666644 77
Q ss_pred CcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEEEcCCC
Q 047869 1968 GKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSPN 2041 (2233)
Q Consensus 1968 G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls~~ 2041 (2233)
|. .+....+.|..|.=++--+. ....+.-+-+.+- -++-+.+.-||++-+.|--+=.+-+..+-+.+..
T Consensus 179 gs-ml~a~nnkG~cyvW~l~~~~--~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 179 GS-MLAAANNKGNCYVWRLLNHQ--TASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred Cc-EEEEecCCccEEEEEccCCC--ccccceEhhheec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 85 66777899999988776422 2222222222211 1556899999999998888888888777766443
No 75
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=46.79 E-value=7.4e+02 Score=31.72 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=34.8
Q ss_pred eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1933 FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1933 FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
.|+||+.+-..++ ......|+|.+..+- .+ -.++|++++|.+++.++.
T Consensus 62 ~I~iys~sG~ll~---~i~w~~~~iv~~~wt--~~--e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGKLLS---SIPWDSGRIVGMGWT--DD--EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCCEeE---EEEECCCCEEEEEEC--CC--CeEEEEEcCCEEEEEeCC
Confidence 7999998887554 466667999988853 22 256677799998877654
No 76
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=46.34 E-value=9.8e+02 Score=33.02 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=115.3
Q ss_pred cCceEEEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCC-
Q 047869 1818 SRGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRG- 1896 (2233)
Q Consensus 1818 ~rGrLAVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~G- 1896 (2233)
.+..+|++--..+.|+++ |.+. ...+.++..-|++..++--.+..+ ..+.|.+|-.....+.++--.+
T Consensus 393 dg~~Ia~st~~~~~iy~L-----~~~~-~vk~~~v~~~~~~~~~a~~i~fti-----d~~k~~~~s~~~~~le~~el~~p 461 (691)
T KOG2048|consen 393 DGNLIAISTVSRTKIYRL-----QPDP-NVKVINVDDVPLALLDASAISFTI-----DKNKLFLVSKNIFSLEEFELETP 461 (691)
T ss_pred CCCEEEEeeccceEEEEe-----ccCc-ceeEEEeccchhhhccceeeEEEe-----cCceEEEEecccceeEEEEecCc
Confidence 456678887778888887 3332 122333444444444333333333 4566666666666666663332
Q ss_pred ceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEe
Q 047869 1897 EVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLS 1976 (2233)
Q Consensus 1897 eV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLS 1976 (2233)
+--+...+.++-.-.+|-++.=-|.-|..-|+.|..-|-||+|..-...+.- ..+.-.++.+.|. ......++|.+
T Consensus 462 s~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~--~rln~~vTa~~~~--~~~~~~lvvat 537 (691)
T KOG2048|consen 462 SFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK--VRLNIDVTAAAFS--PFVRNRLVVAT 537 (691)
T ss_pred chhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch--hccCcceeeeecc--ccccCcEEEEe
Confidence 2233334444433567888888888888556667779999999876633211 0222233333332 35667899999
Q ss_pred cCCceEEEEecccC------CCccccceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEEE
Q 047869 1977 ECGSLYRLELSVEG------NVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGR 2037 (2233)
Q Consensus 1977 S~G~LY~Qels~s~------d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~ 2037 (2233)
+++++|..+|+... ++-...-.+..+.++ +.-|.|. .+.-..-|..|+.+-..+--
T Consensus 538 s~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~---~~~gisf--d~~n~s~~~~~~a~w~~~id 599 (691)
T KOG2048|consen 538 SNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIP---GIPGISF--DPKNSSRFIVYDAHWSCLID 599 (691)
T ss_pred cCCeEEEEecchhhhhhhhhccccccccChhhcCC---CCceEEe--CCCCccEEEEEcCcEEEEEe
Confidence 99999999995221 111111122222222 2235544 48888999999887666653
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=45.57 E-value=2.8e+02 Score=35.98 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=105.2
Q ss_pred CceEE-EeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCCc
Q 047869 1819 RGRLA-VGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGE 1897 (2233)
Q Consensus 1819 rGrLA-VaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~Ge 1897 (2233)
-|+|+ -++.++|+++++++-=.. +|.-.++---....-.|..++|.|-+++.++-||-..|-++-=...+
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~- 260 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKE--------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN- 260 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccC--------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-
Confidence 35544 458999999999653322 11111122223334457899999999999999998777655332222
Q ss_pred eeeeeeeeeccC----CceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEE
Q 047869 1898 VTDRLAIELALQ----GAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFL 1972 (2233)
Q Consensus 1898 V~DRL~LeL~Le----g~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~I 1972 (2233)
.-+++.. ++=|..+.|=|-+..-||-..++ .|+.|||-.=+. |.|.|.-..+.|--+.+-. ...-++
T Consensus 261 -----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSP--h~etvL 332 (422)
T KOG0264|consen 261 -----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSP--HNETVL 332 (422)
T ss_pred -----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCC--CCCcee
Confidence 2222221 56688999999998888877755 999999976665 9999999999998887543 233355
Q ss_pred EEEecCCceEEEEecccCC
Q 047869 1973 IVLSECGSLYRLELSVEGN 1991 (2233)
Q Consensus 1973 LVLSS~G~LY~Qels~s~d 1991 (2233)
--.+++|.+-+=++++-+.
T Consensus 333 ASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 333 ASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred EecccCCcEEEEecccccc
Confidence 5666788888888875443
No 78
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=45.35 E-value=1.3e+02 Score=40.83 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=88.6
Q ss_pred eecccCceEEE-------eeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccc
Q 047869 1814 LSVSSRGRLAV-------GEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYED 1886 (2233)
Q Consensus 1814 LSas~rGrLAV-------aEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkD 1886 (2233)
+++++.|.+++ .|---|-+++.+.=+.+.-...+ ..+|-+|+|||-..-.|+|+-=+-
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H---------------sLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH---------------SLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc---------------ceEEEEEEECCCCcEEEEeecCce
Confidence 44555555544 24445666666555544432221 246778899996555566665555
Q ss_pred eEEEEecCCCceeeeeeeeeccC---CceEEEeEEecCCCceEEEEecC-eEEEEeCcCC--CCCCcEEEEcC-CCCeeE
Q 047869 1887 CQVLTLNPRGEVTDRLAIELALQ---GAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQD--NISPLHYFTLP-DDMIVD 1959 (2233)
Q Consensus 1887 C~VLTfss~GeV~DRL~LeL~Le---g~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D--~lSPvyyF~Lp-sGkIrD 1959 (2233)
..+++. +-++.|-.. .+.. .--|=.+.|-|.+.+ +|-+..| +||||-...+ ..-|.. -.++ ++.++.
T Consensus 596 ~sl~~~--~~~~~~e~~--fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~~~~aVTA 669 (764)
T KOG1063|consen 596 VSLYEV--QEDIKDEFR--FACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISRF-ACLKFSLAVTA 669 (764)
T ss_pred EEeeee--ecccchhhh--hccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhhh-chhccCCceee
Confidence 666655 222232222 1111 335779999999988 7766666 9999999888 433433 2223 334544
Q ss_pred EEEEE--ecCCcEEEEEEecCCceEEEEec
Q 047869 1960 ATLVI--ASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1960 aTfv~--~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
.++.. ..+....+.|=-+.|.||.-...
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecc
Confidence 44432 11222477888899999976544
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=45.29 E-value=3.9e+02 Score=33.11 Aligned_cols=89 Identities=11% Similarity=0.184 Sum_probs=60.7
Q ss_pred eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCe
Q 047869 1933 FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKG 2012 (2233)
Q Consensus 1933 FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~G 2012 (2233)
-++||||.+..-.|+ +|.=-+|.||++.+. .++ .+||-.+.+|-+-+=+..- + .....++. +..-
T Consensus 123 llrvfdln~p~App~-E~~ghtg~Ir~v~wc-~eD--~~iLSSadd~tVRLWD~rT-g-----t~v~sL~~-----~s~V 187 (334)
T KOG0278|consen 123 LLRVFDLNRPKAPPK-EISGHTGGIRTVLWC-HED--KCILSSADDKTVRLWDHRT-G-----TEVQSLEF-----NSPV 187 (334)
T ss_pred HhhhhhccCCCCCch-hhcCCCCcceeEEEe-ccC--ceEEeeccCCceEEEEecc-C-----cEEEEEec-----CCCC
Confidence 589999999887776 556667899999966 343 3666667777766555441 1 11112232 3335
Q ss_pred EEEEeccccceeeEEecCCcEEEE
Q 047869 2013 LSLYFSSTYKLLFLSFQDGTTLVG 2036 (2233)
Q Consensus 2013 VSVyYS~tl~LLF~SY~~G~Sf~a 2036 (2233)
-|+-||++-+.|-++|-.+-.|.-
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwd 211 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWD 211 (334)
T ss_pred cceeeccCCCEEEEecCceeEEec
Confidence 578999999999999988877763
No 80
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.74 E-value=1.2e+03 Score=33.43 Aligned_cols=117 Identities=13% Similarity=0.184 Sum_probs=74.5
Q ss_pred EeecccCccceEEeecc--cceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCC
Q 047869 1868 HLAFNSIVENYLTVAGY--EDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNIS 1945 (2233)
Q Consensus 1868 sLafNP~nEdyLAVcGL--kDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lS 1945 (2233)
.++.-| +++++|..-- ..-.|.-|-.+|-.-....+....++.-|+...|=+.|.. |||.+.+.|.+|-.+-=---
T Consensus 261 ~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~i-LAv~~~~~vqLWt~~NYHWY 338 (928)
T PF04762_consen 261 ALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEI-LAVWLEDRVQLWTRSNYHWY 338 (928)
T ss_pred CccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCE-EEEEecCCceEEEeeCCEEE
Confidence 455555 6777777653 1244666778887766666665456778999999999987 89999989999976521111
Q ss_pred CcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1946 PLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1946 PvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
=+++...+.+.-... +...++..+.+.++++.|.++..++.
T Consensus 339 LKqei~~~~~~~~~~-~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 339 LKQEIRFSSSESVNF-VKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEEEccCCCCCCc-eEECCCCCCEEEEEecCCcEEEEEEE
Confidence 122223333221111 33355566788888888888776664
No 81
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=43.62 E-value=6.8e+02 Score=30.39 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=59.8
Q ss_pred cccceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeC
Q 047869 1860 NIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDL 1939 (2233)
Q Consensus 1860 a~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDL 1939 (2233)
..+.=++-+|++||..+. |+++.=+...|+.++.+|+|..++.+...
T Consensus 18 ~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l~g~-------------------------------- 64 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPLDGF-------------------------------- 64 (248)
T ss_dssp TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE-SS---------------------------------
T ss_pred CCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeCCCC--------------------------------
Confidence 334446889999995555 55555568888999888888877655321
Q ss_pred cCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEec-CCceEEEEecccCCCccccceeeeeccccccc---CCeEEE
Q 047869 1940 SQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSE-CGSLYRLELSVEGNVGATPLKEIIQFNDREIH---AKGLSL 2015 (2233)
Q Consensus 1940 S~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS-~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~---~~GVSV 2015 (2233)
|.-.+.|++ .+| .+ ++.++ .|.||.-++......-...-...+++...... -+| |
T Consensus 65 ---------------~D~EgI~y~--g~~-~~-vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EG--l 123 (248)
T PF06977_consen 65 ---------------GDYEGITYL--GNG-RY-VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEG--L 123 (248)
T ss_dssp ---------------SSEEEEEE---STT-EE-EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EE--E
T ss_pred ---------------CCceeEEEE--CCC-EE-EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEE--E
Confidence 456677754 334 22 22232 78888877754322111111111222221112 235 4
Q ss_pred EeccccceeeEEecC
Q 047869 2016 YFSSTYKLLFLSFQD 2030 (2233)
Q Consensus 2016 yYS~tl~LLF~SY~~ 2030 (2233)
.|.+..+-||+.-+.
T Consensus 124 a~D~~~~~L~v~kE~ 138 (248)
T PF06977_consen 124 AYDPKTNRLFVAKER 138 (248)
T ss_dssp EEETTTTEEEEEEES
T ss_pred EEcCCCCEEEEEeCC
Confidence 999999999988654
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=43.42 E-value=7.2e+02 Score=31.46 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=100.7
Q ss_pred cccceecccCceEE-Ee-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccce
Q 047869 1810 VKSLLSVSSRGRLA-VG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDC 1887 (2233)
Q Consensus 1810 iRqLLSas~rGrLA-Va-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC 1887 (2233)
-|.+.+-+..|.++ ++ +++.|-++|++.-=+.+- ++..+.- +---+.-.|.|+| ++.+|.++--...
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF------~tf~i~~----~~~~ew~~l~FS~-dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF------TTFSITD----NDEAEWTDLEFSP-DGKSILLSTNASF 210 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc------eeEccCC----CCccceeeeEEcC-CCCEEEEEeCCCc
Confidence 35567778888864 44 555999999976533322 1111111 2234677889988 8888888877776
Q ss_pred EEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecC
Q 047869 1888 QVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASR 1967 (2233)
Q Consensus 1888 ~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~ 1967 (2233)
+-+--.-+|++..-...++.- ++.=..|...|.||.-|.=.....|.||++.... +++-+.=| .+-..+.+ +.+
T Consensus 211 ~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~--~v~~~~~~--~~~~~~~~-~fn 284 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK--KVAVLRGP--NGGPVSCV-RFN 284 (311)
T ss_pred EEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc--EeeEecCC--CCCCcccc-ccC
Confidence 666667888876666655543 3344888899999775544455699999994433 44444333 34444433 344
Q ss_pred CcEEEEEEecCCceEEEEe
Q 047869 1968 GKMFLIVLSECGSLYRLEL 1986 (2233)
Q Consensus 1968 G~~~ILVLSS~G~LY~Qel 1986 (2233)
=++.++|.++.--.++-+.
T Consensus 285 P~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 285 PRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CceeeeeecCceEEEEecc
Confidence 5567777777666665443
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=42.28 E-value=7.3e+02 Score=31.58 Aligned_cols=87 Identities=29% Similarity=0.453 Sum_probs=59.5
Q ss_pred EEEEeecccCccceEEeecccceEEEEe--cCCCceeeeeeee------------------------------e------
Q 047869 1865 EIVHLAFNSIVENYLTVAGYEDCQVLTL--NPRGEVTDRLAIE------------------------------L------ 1906 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLkDC~VLTf--ss~GeV~DRL~Le------------------------------L------ 1906 (2233)
+|-.|+|+| -.++|++||=.|..|=+. ..+|..+-+.+.+ |
T Consensus 29 sIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~ 107 (347)
T KOG0647|consen 29 SISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS 107 (347)
T ss_pred chheeEecc-ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee
Confidence 466899999 677788899988876554 4434333322111 1
Q ss_pred --ccCCceEEEeEEecCCCceEEEEec--CeEEEEeCcCCCCCCcEEEEcCC
Q 047869 1907 --ALQGAYIRRVDWVPGSPVQLMVVTN--KFVKIYDLSQDNISPLHYFTLPD 1954 (2233)
Q Consensus 1907 --~Leg~fIIKa~WLPGSQt~LAVVT~--~FVKIYDLS~D~lSPvyyF~Lps 1954 (2233)
++-+.=|+-+.||++-.+++.++++ ..+|.||.- +-.|++..-||+
T Consensus 108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R--~~~pv~t~~LPe 157 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR--SSNPVATLQLPE 157 (347)
T ss_pred eeeecccceeEEEEecCCCcceeEecccccceeecccC--CCCeeeeeeccc
Confidence 1112358999999998877666554 389999987 455889988886
No 84
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=14 Score=53.30 Aligned_cols=65 Identities=23% Similarity=0.436 Sum_probs=47.8
Q ss_pred CCCcceeccCCcccccceEeeccCCCCCCceeehhhhhhhcCCCcEEEE---eecceeeecCCCCCCCCCcee
Q 047869 1588 SKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYS---RSSRFFCDCGAGGVRGSSCQC 1657 (2233)
Q Consensus 1588 ~~~CTFt~TG~~fi~Q~~Y~C~TC~l~~~~GVC~aCA~vCHkGHdVvyl---~k~~FfCDCGa~~~~~~~Cqc 1657 (2233)
-..|+-. -++-|..|.|++|+..+.--+|.-| ..=|..|-+.+. ......||||+-.--..+|.|
T Consensus 13 g~~c~~~----~~~~e~~y~c~~c~~~~~~~~c~~c-~~~~~~~~~~~~v~~~~~~~~c~cgd~da~n~~~~~ 80 (1738)
T KOG1140|consen 13 GRNCGRV----FKIGEPTYRCHECGTDDTCVLCIHC-PEVHVNHSVCTKVHTEFTSGICDCGDEDAWNSPLHC 80 (1738)
T ss_pred ccccccc----cccCCceEEEEecCCCcchhHHHhc-chhhhhhhhcceeEecccccccCCCChhhccCcchH
Confidence 3445543 4567899999999998777788888 555888888876 456789999986554445555
No 85
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=40.28 E-value=2.1e+02 Score=35.61 Aligned_cols=114 Identities=14% Similarity=0.252 Sum_probs=84.5
Q ss_pred cccceecccCceEEE--eeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccce
Q 047869 1810 VKSLLSVSSRGRLAV--GEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDC 1887 (2233)
Q Consensus 1810 iRqLLSas~rGrLAV--aEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC 1887 (2233)
.-....++..|.+-. ++++++.++++.+ . ++ +-+-...=+|-+++|.| |+-.|+.+=-.-+
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~-----~------k~-----lysl~a~~~v~sl~fsp-nrywL~~at~~sI 256 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNE-----G------KN-----LYSLEAFDIVNSLCFSP-NRYWLCAATATSI 256 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccC-----C------ce-----eEeccCCCeEeeEEecC-CceeEeeccCCce
Confidence 445677888888765 3889999999842 1 11 33334445788999988 6666666655567
Q ss_pred EEEEecCCCceeeeeeeeeccC-----CceEEEeEEecCCCceEEEEecCeEEEEeCcC
Q 047869 1888 QVLTLNPRGEVTDRLAIELALQ-----GAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQ 1941 (2233)
Q Consensus 1888 ~VLTfss~GeV~DRL~LeL~Le-----g~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~ 1941 (2233)
.|.-+ ..+.+++.+.++..=+ +.+.+-..|-+.-|++++=-|.+-|++|.+++
T Consensus 257 kIwdl-~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 257 KIWDL-ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEec-cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 77776 4557777777766544 77899999999999999999999999998764
No 86
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=40.19 E-value=66 Score=38.19 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=57.2
Q ss_pred ceecccCceEEEeeCCeEEEEechhhhcccccCCcccccccc-ccccccccceEEEEeecccCccceEEeecccceEEEE
Q 047869 1813 LLSVSSRGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKTNV-KPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLT 1891 (2233)
Q Consensus 1813 LLSas~rGrLAVaEgdKVTILqlsaLLkQad~s~~skdKlTL-trLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLT 1891 (2233)
+-+|..-|.|+|+=++|+.|+.+..-..|.. ..+=+++ ..+-.....|...+|++ -++|+|+..-.|++|+.
T Consensus 140 iaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~----~~~~lDFe~~l~~~~~~~~p~~v~i---c~~yiA~~s~~ev~Vlk 212 (215)
T PF14761_consen 140 IACCPVTGNLLVGCGNKLVLFTLKYQTIQSE----KFSFLDFERSLIDHIDNFKPTQVAI---CEGYIAVMSDLEVLVLK 212 (215)
T ss_pred EEecCCCCCEEEEcCCEEEEEEEEEEEEecc----cccEEechhhhhheecCceEEEEEE---EeeEEEEecCCEEEEEE
Confidence 3456788999999999999999976665421 2233344 34456677888999999 79999999999999998
Q ss_pred ec
Q 047869 1892 LN 1893 (2233)
Q Consensus 1892 fs 1893 (2233)
+.
T Consensus 213 l~ 214 (215)
T PF14761_consen 213 LE 214 (215)
T ss_pred Ee
Confidence 74
No 87
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.96 E-value=5.3e+02 Score=35.23 Aligned_cols=224 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred EEEeecccCccceEEeecc-cceEEEEecCCCceeeeeeeeeccCCce--EEEeEEecCCCceEEEEecC--eEEEEeCc
Q 047869 1866 IVHLAFNSIVENYLTVAGY-EDCQVLTLNPRGEVTDRLAIELALQGAY--IRRVDWVPGSPVQLMVVTNK--FVKIYDLS 1940 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGL-kDC~VLTfss~GeV~DRL~LeL~Leg~f--IIKa~WLPGSQt~LAVVT~~--FVKIYDLS 1940 (2233)
||+|+|||-..+-.|-|-| +-+.|-.+.+. +....|+|-- |..+...||-.-.-.|..++ -|||||--
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSP-------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCC-------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Q ss_pred CCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccc
Q 047869 1941 QDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSST 2020 (2233)
Q Consensus 1941 ~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~t 2020 (2233)
... .....+|--....+++-..---+|+--|++|-+= ==+...+.+..+++.-. ...-.|-+-..
T Consensus 216 tk~-----CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvr------iWhs~Ty~lE~tLn~gl----eRvW~I~~~k~ 280 (794)
T KOG0276|consen 216 TKS-----CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVR------IWNSKTYKLEKTLNYGL----ERVWCIAAHKG 280 (794)
T ss_pred hHH-----HHHHhhcccccceEEEecCCCcEEEEecCCccEE------EecCcceehhhhhhcCC----ceEEEEeecCC
Q ss_pred cceeeEEecCCcEEEEEcCCCccccc--ceeEEE-----EccCCCCCCCcccceeeccCCCceEEEEeccCCCceEEEEe
Q 047869 2021 YKLLFLSFQDGTTLVGRLSPNAASLS--EVSYVF-----EEQDGKLRSAGLHRWKELLASSGLFFCFSSLKSNAAVAVSL 2093 (2233)
Q Consensus 2021 l~LLF~SY~~G~Sf~a~Ls~~~~sv~--eis~Vf-----e~~~gk~~~a~L~qWsEV~~hPGLf~cls~~~sn~pvvv~l 2093 (2233)
-+.+-+.|++|..++ .+-+..-.++ ....++ +.+..+.++.+--- |+ ...+--||.++-
T Consensus 281 ~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~--ev-----------~DgErL~LsvKe 346 (794)
T KOG0276|consen 281 DGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQK--EV-----------TDGERLPLSVKE 346 (794)
T ss_pred CCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcc--cc-----------cCCccccchhhh
Q ss_pred -cCCceeeeccccccCCCCCeEEEEEeecCCCCCeEEEEEeeCCceeEEec
Q 047869 2094 -GTNELIAQNMRHAAGSTSPLVGVTAYKPLSKDKVHCLVLHDDGSLQIYSH 2143 (2233)
Q Consensus 2094 -~pd~I~iQeiK~~~~sSs~vdgva~y~p~s~~rttlLLLcEDGSLrIYsa 2143 (2233)
+.-+|+-|.|+| .-.-...+.|-||--.||.+
T Consensus 347 Lgs~eiyPq~L~h------------------sPNGrfV~VcgdGEyiIyTa 379 (794)
T KOG0276|consen 347 LGSVEIYPQTLAH------------------SPNGRFVVVCGDGEYIIYTA 379 (794)
T ss_pred ccccccchHHhcc------------------CCCCcEEEEecCccEEEEEe
No 88
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=39.82 E-value=5.5e+02 Score=32.23 Aligned_cols=112 Identities=11% Similarity=0.114 Sum_probs=78.6
Q ss_pred EEEeecccCccceEEeec-ccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCC
Q 047869 1866 IVHLAFNSIVENYLTVAG-YEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDN 1943 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcG-LkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~ 1943 (2233)
+-+....| .+.+++++| -+++.-+.|...|+-..++.+.+..++.|.. .|=..+ .++||++.+ .+.|||.-.+.
T Consensus 161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~--S~s~~~-~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN--SFSEND-LQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee--eeccCc-ceEEEEecCCcEEEEEecccc
Confidence 44556655 667888777 5789999999999999998888888888854 354443 458999988 99999998777
Q ss_pred CCCcEEEE----cCCCCeeEEEEEEecCCcEEEEEEecCCceEEEE
Q 047869 1944 ISPLHYFT----LPDDMIVDATLVIASRGKMFLIVLSECGSLYRLE 1985 (2233)
Q Consensus 1944 lSPvyyF~----LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qe 1985 (2233)
.. +-+-+ -+-|.||.+-|-. .|-.-++..| +|.=|.+-
T Consensus 237 tp-m~~~sstrp~hnGa~R~c~Fsl--~g~lDLLf~s-Ehfs~~hv 278 (344)
T KOG4532|consen 237 TP-MAEISSTRPHHNGAFRVCRFSL--YGLLDLLFIS-EHFSRVHV 278 (344)
T ss_pred cc-hhhhcccCCCCCCceEEEEecC--CCcceEEEEe-cCcceEEE
Confidence 43 22221 1578899888753 4555555554 44444443
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.78 E-value=1.3e+03 Score=32.57 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=75.8
Q ss_pred cccccccccccceEEEEeecccCccceEEeecccceE-EEEecCCCceeeeeeeeeccC-CceEEEeEEecCCCceEEEE
Q 047869 1852 TNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQ-VLTLNPRGEVTDRLAIELALQ-GAYIRRVDWVPGSPVQLMVV 1929 (2233)
Q Consensus 1852 lTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~-VLTfss~GeV~DRL~LeL~Le-g~fIIKa~WLPGSQt~LAVV 1929 (2233)
+.+..=++.-.-+..-.|+-+.-.+|+||+|--.-.. |.-+|.. ++.-.+..--+ .--+.+..|=+-... +.|.
T Consensus 76 ~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliS 151 (839)
T KOG0269|consen 76 CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPN-ILIS 151 (839)
T ss_pred eeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCcc-EEEe
Confidence 3333333333444555777788899999988544322 2333332 11111111112 345888888877665 4444
Q ss_pred ecC--eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1930 TNK--FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1930 T~~--FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
.+| +||+|||-.+.- +-.|.--+..|||+.|.... | +.-.-..+.|+|--=+|+
T Consensus 152 GSQDg~vK~~DlR~~~S--~~t~~~nSESiRDV~fsp~~-~-~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKKS--KSTFRSNSESIRDVKFSPGY-G-NKFASIHDSGYLQLWDLR 207 (839)
T ss_pred cCCCceEEEEeeecccc--cccccccchhhhceeeccCC-C-ceEEEecCCceEEEeecc
Confidence 444 999999976542 23444488899999988654 4 455566688887766666
No 90
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.73 E-value=71 Score=44.71 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=122.8
Q ss_pred ceEEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCCce
Q 047869 1820 GRLAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEV 1898 (2233)
Q Consensus 1820 GrLAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV 1898 (2233)
|.+|=+ |.|+|.+++..++++-... --+.+.+.... .|..+-|||--+|.||-+| .|=.|+.++=+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~-------~~la~~~~h~G--~V~gLDfN~~q~nlLASGa-~~geI~iWDln--- 147 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASE-------EVLATKSKHTG--PVLGLDFNPFQGNLLASGA-DDGEILIWDLN--- 147 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcch-------HHHhhhcccCC--ceeeeeccccCCceeeccC-CCCcEEEeccC---
Confidence 566655 9999999999998543321 11222222222 3558999999999998765 33444444222
Q ss_pred eeeeeeeecc------CCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEE
Q 047869 1899 TDRLAIELAL------QGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMF 1971 (2233)
Q Consensus 1899 ~DRL~LeL~L------eg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ 1971 (2233)
..+-.. .-.-|..+.|=-.-|--||=++.. ++-||||-+. .|+..|.-..+..+=..+--..++.-.
T Consensus 148 ----n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 148 ----KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred ----CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCcee
Confidence 111111 124589999988888888877777 9999999988 899999999988433333335678888
Q ss_pred EEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEecccc-ceeeEEecCCcEEEEEcC
Q 047869 1972 LIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTY-KLLFLSFQDGTTLVGRLS 2039 (2233)
Q Consensus 1972 ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl-~LLF~SY~~G~Sf~a~Ls 2039 (2233)
|++.|.+-+.=.=.+-.-. +-..+ +++-.+ -..|-+||-..++= .||+=|=.||+.++=..+
T Consensus 222 l~~As~dd~~PviqlWDlR-~assP----~k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLR-FASSP----LKILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeeecCCCCCceeEeeccc-ccCCc----hhhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 8888876554432222100 00011 111111 13456788888877 777777889998885543
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=38.24 E-value=1.1e+03 Score=31.79 Aligned_cols=258 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEEeecccCccceEEeecccceEEEEecCCCceeee---eeeeeccCCceEEEe-------------EEecCCCceEEEE
Q 047869 1866 IVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDR---LAIELALQGAYIRRV-------------DWVPGSPVQLMVV 1929 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DR---L~LeL~Leg~fIIKa-------------~WLPGSQt~LAVV 1929 (2233)
|-++.|.|.-+.+|+|-| +++-.+.|| ..++..-.+-||+++ .|=|.+..++.-.
T Consensus 217 i~sl~ys~Tg~~iLvvsg---------~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSG---------SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cceeeecCCCCeEEEEec---------CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Q ss_pred ecC-eEEEEeCcCCCCCCcEEEEcCCC--CeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccc
Q 047869 1930 TNK-FVKIYDLSQDNISPLHYFTLPDD--MIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDR 2006 (2233)
Q Consensus 1930 T~~-FVKIYDLS~D~lSPvyyF~LpsG--kIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~ 2006 (2233)
..+ .++|||+....--=.-.-..+.| +|--.+--++.+|+. |-.---+|.|-+=+...-.-+..+...+ -.
T Consensus 288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~-----AH 361 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKD-----AH 361 (641)
T ss_pred cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeee-----cc
Q ss_pred cccCCeEEEEeccccceeeEEecCCcEEEEEcCCCcccccceeEEEEccCCCCCCCcccceeeccCC-CceEEEEe----
Q 047869 2007 EIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSPNAASLSEVSYVFEEQDGKLRSAGLHRWKELLAS-SGLFFCFS---- 2081 (2233)
Q Consensus 2007 q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls~~~~sv~eis~Vfe~~~gk~~~a~L~qWsEV~~h-PGLf~cls---- 2081 (2233)
+-..+=-||.||.+-+.|.--=.+++-=+=-|.... .+|.-|+-+++. ||.=||+|
T Consensus 362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-------------------kpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-------------------KPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred CCCCceeEEEeccccchhhhccCCCceeeeeccccc-------------------cchhhhcCCCccCCCCccccCCCce
Q ss_pred ----------ccCCCceEEEEecCCceeeeccccccCCCCCeEEEEEeecCCCCCeEEEEEeeCCceeEEeccCCCCCcc
Q 047869 2082 ----------SLKSNAAVAVSLGTNELIAQNMRHAAGSTSPLVGVTAYKPLSKDKVHCLVLHDDGSLQIYSHVPHGVDAA 2151 (2233)
Q Consensus 2082 ----------~~~sn~pvvv~l~pd~I~iQeiK~~~~sSs~vdgva~y~p~s~~rttlLLLcEDGSLrIYsa~P~~~~a~ 2151 (2233)
.++.+ -|.+.....-=.+|.|-. +++.|+-+.|--.+++ +++=+-||...||--.-...-.+
T Consensus 423 li~TGtS~~~~~~~g-~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLNQ----i~~gsgdG~~~vyYdp~~S~RGa 494 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAG-TLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLNQ----IFAGSGDGTAHVYYDPNESIRGA 494 (641)
T ss_pred EEEecccccCCCCCc-eEEEEeccceeeEEEecC---CCceEEEEeecchhhh----eeeecCCCceEEEECccccccch
Q ss_pred cchhhhhhhccccc
Q 047869 2152 TSVTAEKVKKLGSN 2165 (2233)
Q Consensus 2152 ~s~~~~k~kk~ga~ 2165 (2233)
..--.++.||...+
T Consensus 495 k~cv~k~~rkk~~~ 508 (641)
T KOG0772|consen 495 KLCVVKPPRKKHID 508 (641)
T ss_pred hheeecCccccchh
No 92
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=36.16 E-value=4.9e+02 Score=29.03 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=69.3
Q ss_pred eEEEEeec-ccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEe--cCeEEEEeCc
Q 047869 1864 FEIVHLAF-NSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT--NKFVKIYDLS 1940 (2233)
Q Consensus 1864 FeVlsLaf-NP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT--~~FVKIYDLS 1940 (2233)
..+..+.. +|....+++.++..+..+..++..+ ..............|..+.|-|..+. ++... ...+++||+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLR 186 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcC
Confidence 34444444 5655557777777676666665554 01111122223556778999999984 44443 6799999999
Q ss_pred CCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEE-ecCCceEEE
Q 047869 1941 QDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVL-SECGSLYRL 1984 (2233)
Q Consensus 1941 ~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVL-SS~G~LY~Q 1984 (2233)
. ..+...+....+.|...++. ++|. .+++. +.+|.++.-
T Consensus 187 ~--~~~~~~~~~~~~~v~~~~~~--~~~~-~~~~~~~~d~~i~~w 226 (466)
T COG2319 187 T--GKPLSTLAGHTDPVSSLAFS--PDGG-LLIASGSSDGTIRLW 226 (466)
T ss_pred C--CceEEeeccCCCceEEEEEc--CCcc-eEEEEecCCCcEEEE
Confidence 8 44455555566778888866 5565 33333 788888733
No 93
>PRK02889 tolB translocation protein TolB; Provisional
Probab=36.02 E-value=1e+03 Score=30.23 Aligned_cols=175 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred EEEeecccCccceEEeecccc--eEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC--eEEEEeCcC
Q 047869 1866 IVHLAFNSIVENYLTVAGYED--CQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK--FVKIYDLSQ 1941 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkD--C~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~--FVKIYDLS~ 1941 (2233)
+...+++| +++.||+..-++ .+|+.++.+|....++ .-.........|-|..+. |+.++++ ...||.+..
T Consensus 242 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~l----t~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 242 NSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGLRRL----TQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred ccceEECC-CCCEEEEEEccCCCceEEEEECCCCCcEEC----CCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEEC
Q ss_pred CCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCC--ceEEEEecccCCCccccceeeeecccccccCCeEEEEecc
Q 047869 1942 DNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECG--SLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSS 2019 (2233)
Q Consensus 1942 D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G--~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~ 2019 (2233)
+.-.+.--. ...+......+ .++|+.+.++....| +||..++.... ...+++ ....-+..+|+
T Consensus 316 ~~g~~~~lt-~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~---------~~~~~~p~~sp 380 (427)
T PRK02889 316 SGGAAQRVT-FTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQ---VTALTD---------TTRDESPSFAP 380 (427)
T ss_pred CCCceEEEe-cCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCC---eEEccC---------CCCccCceECC
Q ss_pred ccceeeEEe-cCCcEEEEEcCCCcccccceeEEEEccCCCCCCCccccee
Q 047869 2020 TYKLLFLSF-QDGTTLVGRLSPNAASLSEVSYVFEEQDGKLRSAGLHRWK 2068 (2233)
Q Consensus 2020 tl~LLF~SY-~~G~Sf~a~Ls~~~~sv~eis~Vfe~~~gk~~~a~L~qWs 2068 (2233)
+-++|+++- ..|++.+..++.+. ..........|....+ .|+
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~~g----~~~~~l~~~~g~~~~p---~ws 423 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSSDG----RIKQRLSVQGGDVREP---SWG 423 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEECCC----CceEEeecCCCCCCCC---ccC
No 94
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=35.18 E-value=7e+02 Score=36.48 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=98.9
Q ss_pred eeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccc--eEEEEecCCCceeeee
Q 047869 1825 GEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYED--CQVLTLNPRGEVTDRL 1902 (2233)
Q Consensus 1825 aEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkD--C~VLTfss~GeV~DRL 1902 (2233)
...|-|-|+|+.++.+... +....+|.-| ..-+++.+.+.+ |.|.+||. -+| +++++++.. ...+.
T Consensus 1068 S~DGtVKvW~~~k~~~~~~---s~rS~ltys~---~~sr~~~vt~~~---~~~~~Av~-t~DG~v~~~~id~~--~~~~~ 1135 (1431)
T KOG1240|consen 1068 SDDGTVKVWNLRKLEGEGG---SARSELTYSP---EGSRVEKVTMCG---NGDQFAVS-TKDGSVRVLRIDHY--NVSKR 1135 (1431)
T ss_pred cCCceEEEeeehhhhcCcc---eeeeeEEEec---cCCceEEEEecc---CCCeEEEE-cCCCeEEEEEcccc--ccccc
Confidence 4788999999999998854 2345555554 344556666555 78899988 444 566777653 12222
Q ss_pred ----eeeecc--CCceEEEeEEecCCCc-eEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEE
Q 047869 1903 ----AIELAL--QGAYIRRVDWVPGSPV-QLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIV 1974 (2233)
Q Consensus 1903 ----~LeL~L--eg~fIIKa~WLPGSQt-~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILV 1974 (2233)
...+.+ +|.++.---..-..|+ .|+.+|.. .|-+||.-.+.-.=.-.+-+-.|.|...+ .++.| .-+++
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~--idp~~-~Wlvi 1212 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV--IDPWC-NWLVI 1212 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE--ecCCc-eEEEE
Confidence 223333 4776666666677777 66666655 88889887766655556666678877655 35655 58889
Q ss_pred EecCCceEEEEec
Q 047869 1975 LSECGSLYRLELS 1987 (2233)
Q Consensus 1975 LSS~G~LY~Qels 1987 (2233)
=|+.|.+-.=+++
T Consensus 1213 Gts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLR 1225 (1431)
T ss_pred ecCCceEEEEEee
Confidence 9999998887776
No 95
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.07 E-value=1.3e+03 Score=31.29 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=38.8
Q ss_pred ccCCCceEEEEe---cCCceeeeccccccCCCCCeEEEEEee--------------cC---------CCCCeEEEEEeeC
Q 047869 2082 SLKSNAAVAVSL---GTNELIAQNMRHAAGSTSPLVGVTAYK--------------PL---------SKDKVHCLVLHDD 2135 (2233)
Q Consensus 2082 ~~~sn~pvvv~l---~pd~I~iQeiK~~~~sSs~vdgva~y~--------------p~---------s~~rttlLLLcED 2135 (2233)
.++++.|+-+.+ .|.+++.=|.+.... ...++...+|. |+ +.+..++++=|+|
T Consensus 202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~-g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D 280 (545)
T PF11768_consen 202 IRTENDPLDVEFSLNQPYQIHTVEQSISVK-GEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED 280 (545)
T ss_pred EEecCCcEEEEccCCCCcEEEEEEEecCCC-CCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC
Confidence 557888888887 567776666554211 11222222211 11 2356678999999
Q ss_pred CceeEEeccC
Q 047869 2136 GSLQIYSHVP 2145 (2233)
Q Consensus 2136 GSLrIYsa~P 2145 (2233)
||+.+|..+.
T Consensus 281 gSiiLyD~~~ 290 (545)
T PF11768_consen 281 GSIILYDTTR 290 (545)
T ss_pred CeEEEEEcCC
Confidence 9999999764
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.05 E-value=1.2e+03 Score=30.83 Aligned_cols=113 Identities=15% Similarity=0.216 Sum_probs=77.0
Q ss_pred EEEEeecccCccceEEeecccceEEEEe--cCCCceeeeeeeeeccCC--ceEEEeEEecCCCceEEEEecCeEEEEeCc
Q 047869 1865 EIVHLAFNSIVENYLTVAGYEDCQVLTL--NPRGEVTDRLAIELALQG--AYIRRVDWVPGSPVQLMVVTNKFVKIYDLS 1940 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLkDC~VLTf--ss~GeV~DRL~LeL~Leg--~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS 1940 (2233)
||=-+.|+| |+.|||- +-+||.+..+ .+.+. +.+.-.+.| .-+.=+.|=|.+...+|---.+-++.||..
T Consensus 226 EVWfl~FS~-nGkyLAs-aSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 226 EVWFLQFSH-NGKYLAS-ASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred cEEEEEEcC-CCeeEee-ccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence 567788987 9999996 5678877666 22222 344444553 347778899999999998888899999987
Q ss_pred CCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1941 QDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1941 ~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
.-..--+| .--.|.-..++.|+ ++|. ++++-|.++.+|+=++.
T Consensus 300 tgd~~~~y--~~~~~~S~~sc~W~-pDg~-~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 300 TGDLRHLY--PSGLGFSVSSCAWC-PDGF-RFVTGSPDRTIIMWDLD 342 (519)
T ss_pred cchhhhhc--ccCcCCCcceeEEc-cCCc-eeEecCCCCcEEEecCC
Confidence 65533222 21123444555564 7784 58888899999976665
No 97
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.70 E-value=1.7e+02 Score=39.84 Aligned_cols=98 Identities=23% Similarity=0.414 Sum_probs=68.7
Q ss_pred cCceEEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeeccc-------ce-E
Q 047869 1818 SRGRLAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYE-------DC-Q 1888 (2233)
Q Consensus 1818 ~rGrLAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLk-------DC-~ 1888 (2233)
.|-++||+ ++|.+-|..- ..|-.|+ --..||.|+..+.|| |+.+|||||.. |. +
T Consensus 228 drP~lavcy~nGr~QiMR~-----eND~~Pv-----------v~dtgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~ 290 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRS-----ENDPEPV-----------VVDTGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNK 290 (1189)
T ss_pred CCCEEEEEEcCceehhhhh-----cCCCCCe-----------EEecccEeecceecC-CCcEEEEccCcccccCccccce
Confidence 46678998 8888833221 2232222 223579999999999 99999999974 34 5
Q ss_pred EEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEE
Q 047869 1889 VLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIY 1937 (2233)
Q Consensus 1889 VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIY 1937 (2233)
|.-.++=|.+.. .+..+|.-|.-.-|=-++ -.+|++...||=+=
T Consensus 291 v~Fysp~G~i~g----tlkvpg~~It~lsWEg~g-LriA~Avdsfiyfa 334 (1189)
T KOG2041|consen 291 VHFYSPYGHIVG----TLKVPGSCITGLSWEGTG-LRIAIAVDSFIYFA 334 (1189)
T ss_pred EEEeccchhheE----EEecCCceeeeeEEcCCc-eEEEEEecceEEEE
Confidence 555667766554 445578889999997765 46899998888664
No 98
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=33.70 E-value=1.7e+02 Score=32.83 Aligned_cols=108 Identities=22% Similarity=0.368 Sum_probs=57.4
Q ss_pred ccceecccCceEEEeeCCeEEEE---echhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccce
Q 047869 1811 KSLLSVSSRGRLAVGEGDKVAIF---DVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDC 1887 (2233)
Q Consensus 1811 RqLLSas~rGrLAVaEgdKVTIL---qlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC 1887 (2233)
.+.|+-+..|+|||+-++.|.|| ....+-+... ..-...+. ..+++++..+..|- .+.+++.
T Consensus 7 ~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~p-- 71 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFI------PRPLTLPP--SSIQWPITSIRRNL-----FTSSEWP-- 71 (173)
T ss_pred CcCeeECCCCCEEEEcCCeEEEEeccCCcccccccc------cCCccccc--ccCCCccceEecCc-----cccccCc--
Confidence 46788899999999999999999 3320111100 00001111 22233333333321 1223332
Q ss_pred EEEEecCCCceeeeeeeeeccCCceEEEeEEec-----CCCceEEEEecC-eEEEEeCcCC
Q 047869 1888 QVLTLNPRGEVTDRLAIELALQGAYIRRVDWVP-----GSPVQLMVVTNK-FVKIYDLSQD 1942 (2233)
Q Consensus 1888 ~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLP-----GSQt~LAVVT~~-FVKIYDLS~D 1942 (2233)
+.++. ...+ .......|+.+.|=| .....|||.|++ -|+||--..+
T Consensus 72 ---~~~~~-~~~~-----~~~s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 72 ---TESPR-SMDD-----EEISSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ---eeccc-cccc-----cccccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 11111 1111 111134899999988 346788887777 8999987654
No 99
>PRK04922 tolB translocation protein TolB; Provisional
Probab=33.39 E-value=1.1e+03 Score=29.87 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=61.1
Q ss_pred EEEEeecccCccceEEeecccc--eEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEe-cC---eEEEEe
Q 047869 1865 EIVHLAFNSIVENYLTVAGYED--CQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVT-NK---FVKIYD 1938 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLkD--C~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT-~~---FVKIYD 1938 (2233)
.+.+.+++| ++++||.+.+.+ .+|+.++-++.-..++. ..+| ......|-|..+. |+++. .+ -|.+||
T Consensus 205 ~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g-~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 205 PILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRG-INGAPSFSPDGRR-LALTLSRDGNPEIYVMD 278 (433)
T ss_pred ccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCC-CccCceECCCCCE-EEEEEeCCCCceEEEEE
Confidence 467888988 677888876543 45555554432222221 1122 2346789997655 55443 22 478888
Q ss_pred CcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCc--eEEEEec
Q 047869 1939 LSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGS--LYRLELS 1987 (2233)
Q Consensus 1939 LS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~--LY~Qels 1987 (2233)
+......+... -.+...+. -+.++|+.++++....|. ||..++.
T Consensus 279 ~~~g~~~~lt~---~~~~~~~~--~~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 279 LGSRQLTRLTN---HFGIDTEP--TWAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred CCCCCeEECcc---CCCCccce--EECCCCCEEEEEECCCCCceEEEEECC
Confidence 87665432211 11222333 335778766666545554 7876654
No 100
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=32.96 E-value=55 Score=38.38 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHHHHHHhhhhhccCCcc-----cchHHHHHHHHhhccccccccccccccccccccc----cCchhHHHHHHHHHHHHHh
Q 047869 289 SLRIMKLLGSLVKDMPYV-----KYDALILHAIASFADVLPSLFQPCFEFANNHCAA----EGSFESIILLLLEEFLHIV 359 (2233)
Q Consensus 289 ~~r~lkl~~~l~~~~~~~-----~~d~~~l~~va~~~d~lp~lf~~~f~f~~~h~~~----~~~~~~~~l~l~e~fL~~~ 359 (2233)
+--||+||+.|.+-+... ..|.|=.+-+++|-+.++..=-.++++ -.--.| -.++.+.+-+++-+| -++
T Consensus 51 T~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~F~~~~a~~~a~~~~i-pRsReVgQS~ltSv~Tti~all~s~-~lv 128 (211)
T KOG3339|consen 51 TGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARSFELSLAHCKAKNYEI-PRSREVGQSWLTSVFTTIWALLQSF-VLV 128 (211)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecCchhhHHHHHhhhccccccchhheec-chhhhhhhhhhhhHHHHHHHHHHHh-eEE
Confidence 356778888876555443 459999999999999999988877776 222223 356777888888888 566
Q ss_pred hhhccCccccch----hHHHHHHHhhhccCCCcce--ecCCCcCC
Q 047869 360 QVIFCSGNFFQN----IRACIMASILDNLDPSIWR--YDNSSANL 398 (2233)
Q Consensus 360 ~~if~~~~v~qn----v~~ci~as~l~~l~~~~wr--~~~~~~~~ 398 (2233)
-.|+|+-..|.- |..|.+|-+.++|+...|+ |..|-|-.
T Consensus 129 ~RirPdlil~NGPGTCv~i~~~a~l~~iL~~~~~~IvyvES~cRV 173 (211)
T KOG3339|consen 129 WRIRPDLILCNGPGTCVPICLSAYLMEILGLKSSHIVYVESICRV 173 (211)
T ss_pred EecCCCEEEECCCCcEeHHHHHHHHHHHhCcCceEEEEEeeeeEe
Confidence 667887766654 7889999999999987776 44454433
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.82 E-value=3.9e+02 Score=33.04 Aligned_cols=162 Identities=18% Similarity=0.167 Sum_probs=102.8
Q ss_pred EEEeecccCccceEEeecccc--eEEEEecCC-CceeeeeeeeeccCCceEEEeEEecCCCc-------------eEEEE
Q 047869 1866 IVHLAFNSIVENYLTVAGYED--CQVLTLNPR-GEVTDRLAIELALQGAYIRRVDWVPGSPV-------------QLMVV 1929 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkD--C~VLTfss~-GeV~DRL~LeL~Leg~fIIKa~WLPGSQt-------------~LAVV 1929 (2233)
|-+|++-|-.=-++..||--| +-|||++.+ |-.+.++.--... =+.-+-|-|.+.- .||-.
T Consensus 105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~---GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI---GVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc---ccceeeecCcCCCccccccCcccccceeecc
Confidence 447778787777788888765 678999888 4444444321111 1556678887533 24444
Q ss_pred ecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEec-CCcEEEEEEecCCceEEEEecccCCCccccceeeeeccccc
Q 047869 1930 TNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIAS-RGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDRE 2007 (2233)
Q Consensus 1930 T~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e-~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q 2007 (2233)
-.+ .||||+...|.----.++-=-.|-+||++--..- ..+.+|.--|.+|.+.+-..+...+.-...+.+.
T Consensus 182 GcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~------- 254 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE------- 254 (299)
T ss_pred CCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc-------
Confidence 444 8999999998433333333346789999965442 4677888999999987654443332222222221
Q ss_pred ccCCeEEEEeccccceeeEEecCCcEEEEE
Q 047869 2008 IHAKGLSLYFSSTYKLLFLSFQDGTTLVGR 2037 (2233)
Q Consensus 2008 ~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~ 2037 (2233)
...---++-+|.+-++|=+|+-+++..+-+
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 223366889999999999999887665543
No 102
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=29.48 E-value=3.3e+02 Score=35.03 Aligned_cols=160 Identities=17% Similarity=0.217 Sum_probs=90.8
Q ss_pred ccccccccceE-EEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCe
Q 047869 1855 KPLSRNIVRFE-IVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKF 1933 (2233)
Q Consensus 1855 trLSsa~VpFe-VlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~F 1933 (2233)
+|+++-.-+++ |.++.|||...+.||+||=..=.||-=-..+...-++.+....++. -|=| ....-++.++=
T Consensus 178 ~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I-----swnP--eafnF~~a~ED 250 (433)
T KOG0268|consen 178 NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI-----CWNP--EAFNFVAANED 250 (433)
T ss_pred CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce-----ecCc--cccceeecccc
Confidence 68888888887 7899999999999999987666665555666666666666666554 4999 33444556654
Q ss_pred EEEEeCcCCCCC-CcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCe
Q 047869 1934 VKIYDLSQDNIS-PLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKG 2012 (2233)
Q Consensus 1934 VKIYDLS~D~lS-PvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~G 2012 (2233)
-.+|-.---++. |..-|.=--..+.|+.|- +.|+-+ +--|=+-.|=+.... ++---.++.|- ....-
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs--ptG~Ef-vsgsyDksIRIf~~~-~~~SRdiYhtk--------RMq~V 318 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS--PTGQEF-VSGSYDKSIRIFPVN-HGHSRDIYHTK--------RMQHV 318 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccC--CCcchh-ccccccceEEEeecC-CCcchhhhhHh--------hhhee
Confidence 455543333332 333222222244555432 444322 222222222222222 11111123332 23447
Q ss_pred EEEEeccccceeeEEecCCcE
Q 047869 2013 LSLYFSSTYKLLFLSFQDGTT 2033 (2233)
Q Consensus 2013 VSVyYS~tl~LLF~SY~~G~S 2033 (2233)
++|.||++.+.+|-.-++|-.
T Consensus 319 ~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred eEEEEeccccEEEecCCCcce
Confidence 788999999988866666543
No 103
>PRK03629 tolB translocation protein TolB; Provisional
Probab=29.43 E-value=1.3e+03 Score=29.45 Aligned_cols=155 Identities=12% Similarity=0.203 Sum_probs=75.6
Q ss_pred EEEEeecccCccceEEeecc--cceEEEEecCC-CceeeeeeeeeccCCceEEEeEEecCCCceEEEEec----CeEEEE
Q 047869 1865 EIVHLAFNSIVENYLTVAGY--EDCQVLTLNPR-GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTN----KFVKIY 1937 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGL--kDC~VLTfss~-GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~----~FVKIY 1937 (2233)
.+.+.+++| +++.||.... .+-+|+..+-. |+. .++. ...+ ......|-|..+. ||.+.. ..|.+|
T Consensus 200 ~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~---~~~~-~~~~~~~SPDG~~-La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 200 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV-RQVA---SFPR-HNGAPAFSPDGSK-LAFALSKTGSLNLYVM 272 (429)
T ss_pred ceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe-EEcc---CCCC-CcCCeEECCCCCE-EEEEEcCCCCcEEEEE
Confidence 477899998 6788887633 12344444333 332 2221 1122 2335689998765 554432 247778
Q ss_pred eCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCC--ceEEEEecccCCCccccceeeeecccccccCCeEEE
Q 047869 1938 DLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECG--SLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSL 2015 (2233)
Q Consensus 1938 DLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G--~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSV 2015 (2233)
|+...... .+..+.-.+......++|+.++++....| .||..++.. +. ...++ ... +.-.+.
T Consensus 273 d~~tg~~~-----~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g~--~~~lt----~~~----~~~~~~ 336 (429)
T PRK03629 273 DLASGQIR-----QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-GA--PQRIT----WEG----SQNQDA 336 (429)
T ss_pred ECCCCCEE-----EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-CC--eEEee----cCC----CCccCE
Confidence 88655432 22322222233344577876555554444 577665531 11 11111 111 111234
Q ss_pred Eecccccee-eEEecCCcEEEEEcCCCc
Q 047869 2016 YFSSTYKLL-FLSFQDGTTLVGRLSPNA 2042 (2233)
Q Consensus 2016 yYS~tl~LL-F~SY~~G~Sf~a~Ls~~~ 2042 (2233)
.+|++=+.| |.+..+|...+..++...
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCC
Confidence 567765554 445556655555444443
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=28.73 E-value=3.4e+02 Score=34.51 Aligned_cols=147 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred eecccCceEEEe--eCCeEEEEec-hhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeeccc-ceEE
Q 047869 1814 LSVSSRGRLAVG--EGDKVAIFDV-GQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYE-DCQV 1889 (2233)
Q Consensus 1814 LSas~rGrLAVa--EgdKVTILql-saLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLk-DC~V 1889 (2233)
+-....+.+.|. ++-||+++++ +++|+.-+.+-.+-.-..+.| +++|+||||+- |+.|
T Consensus 193 iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP------------------~GRFia~~gFTpDVkV 254 (420)
T KOG2096|consen 193 IGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP------------------DGRFIAVSGFTPDVKV 254 (420)
T ss_pred EeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCC------------------CCcEEEEecCCCCceE
Q ss_pred EEe--cCCCceeeeeee-eeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEec
Q 047869 1890 LTL--NPRGEVTDRLAI-ELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIAS 1966 (2233)
Q Consensus 1890 LTf--ss~GeV~DRL~L-eL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e 1966 (2233)
... ..+|++-+-..+ +|.=-..=+.-+-.=|.|...+.|--...+||||...-.---+--+.|-.|. .+..+.
T Consensus 255 wE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~----~pl~aa 330 (420)
T KOG2096|consen 255 WEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS----APLHAA 330 (420)
T ss_pred EEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC----cchhhc
Q ss_pred CCcEEEEEEecCCceE
Q 047869 1967 RGKMFLIVLSECGSLY 1982 (2233)
Q Consensus 1967 ~G~~~ILVLSS~G~LY 1982 (2233)
.+.-.=+-||-+|.++
T Consensus 331 g~~p~RL~lsP~g~~l 346 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSL 346 (420)
T ss_pred CCCceEEEeCCCCcEE
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=28.34 E-value=3.8e+02 Score=38.86 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=87.5
Q ss_pred ecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCC-----CcEEEEcCCCCeeEEEEEEe
Q 047869 1892 LNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNIS-----PLHYFTLPDDMIVDATLVIA 1965 (2233)
Q Consensus 1892 fss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lS-----PvyyF~LpsGkIrDaTfv~~ 1965 (2233)
++++|..+-||+-|= .-++|..=.+++...++-...| -|||||+.+-.-. .-.+|..-.+.+.-.|..
T Consensus 1034 W~p~G~lVAhL~Ehs----~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-- 1107 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS----SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-- 1107 (1431)
T ss_pred CCccceEeehhhhcc----ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec--
Confidence 788888877765432 2234777788887777655555 8999999875543 555666666667666655
Q ss_pred cCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccc--c-ceeeEEecCCcEEE
Q 047869 1966 SRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSST--Y-KLLFLSFQDGTTLV 2035 (2233)
Q Consensus 1966 e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~t--l-~LLF~SY~~G~Sf~ 2035 (2233)
.+|+ ...|.|++|.+-+..+... +.+....+...+++.+..|..|+|+-.-. . .+|-++...|.-+.
T Consensus 1108 ~~~~-~~Av~t~DG~v~~~~id~~--~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1108 GNGD-QFAVSTKDGSVRVLRIDHY--NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred cCCC-eEEEEcCCCeEEEEEcccc--ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 3454 4455599999999988743 44455555566666666777888875432 2 25555555554443
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=28.33 E-value=5.8e+02 Score=36.02 Aligned_cols=118 Identities=20% Similarity=0.212 Sum_probs=70.7
Q ss_pred eecccCce-EEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEE
Q 047869 1814 LSVSSRGR-LAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLT 1891 (2233)
Q Consensus 1814 LSas~rGr-LAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLT 1891 (2233)
|+-+..|. |||. -.|+|.|+++..-.---+....-++ +=..+ .=-+-.+++.|-++.++|++==+++.|+.
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~--n~~~~-----s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD--NEFIL-----SRICTRLAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc--ccccc-----cceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence 55566554 7775 8999999999532221111111111 11111 11245788999888888777777777776
Q ss_pred ecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcC
Q 047869 1892 LNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQ 1941 (2233)
Q Consensus 1892 fss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~ 1941 (2233)
- .+++..-.|..+..-.+ +..+.|-|+-++.=|..+..-|-|||--.
T Consensus 217 r-~~we~~f~Lr~~~~ss~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 217 R-KGWELQFKLRDKLSSSK--FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred c-CCceeheeecccccccc--eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 5 33333333322222223 88899999977744566666999999876
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=28.09 E-value=6.1e+02 Score=30.99 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=56.5
Q ss_pred eEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCC---CcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCC--ceEEEE
Q 047869 1912 YIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNIS---PLHYFTLPDDMIVDATLVIASRGKMFLIVLSECG--SLYRLE 1985 (2233)
Q Consensus 1912 fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lS---PvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G--~LY~Qe 1985 (2233)
-|-...|-|.-|- ||.-.|+ .||+--.+-|..+ |-.+|..-.|-|||.+|+-.++-.-.|++..-+| .||+-+
T Consensus 91 siyc~~ws~~gel-iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 91 SIYCTAWSPCGEL-IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred cEEEEEecCccCe-EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 4677889999753 6666666 9999999888766 7789999999999999997765555677665555 356544
Q ss_pred ec
Q 047869 1986 LS 1987 (2233)
Q Consensus 1986 ls 1987 (2233)
-.
T Consensus 170 c~ 171 (350)
T KOG0641|consen 170 CG 171 (350)
T ss_pred cC
Confidence 43
No 108
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.47 E-value=1.8e+02 Score=39.94 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=28.4
Q ss_pred CCeEEEEEeecCCCCCeEEEEEeeCCceeEEecc
Q 047869 2111 SPLVGVTAYKPLSKDKVHCLVLHDDGSLQIYSHV 2144 (2233)
Q Consensus 2111 s~vdgva~y~p~s~~rttlLLLcEDGSLrIYsa~ 2144 (2233)
+..+-=+.+||.+-..+|+++|..|+.||+|...
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence 3444556779999899999999999999999874
No 109
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.46 E-value=4e+02 Score=34.46 Aligned_cols=103 Identities=19% Similarity=0.347 Sum_probs=78.4
Q ss_pred ceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecC--CCceEEEEecCeEEEEeCcCCCCCCcEEEEcCC
Q 047869 1877 NYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPG--SPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPD 1954 (2233)
Q Consensus 1877 dyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPG--SQt~LAVVT~~FVKIYDLS~D~lSPvyyF~Lps 1954 (2233)
|-|=+|-+.+| .=+|+++---.|+|.+... ..|-.+..+|| .+....++-...|++||-. .-=-|+-.|-.-+
T Consensus 173 n~lkiwdle~~-~qiw~aKNvpnD~L~LrVP---vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~-~qRRPV~~fd~~E 247 (412)
T KOG3881|consen 173 NELKIWDLEQS-KQIWSAKNVPNDRLGLRVP---VWITDIRFLEGSPNYKFATITRYHQVRLYDTR-HQRRPVAQFDFLE 247 (412)
T ss_pred cceeeeecccc-eeeeeccCCCCccccceee---eeeccceecCCCCCceEEEEecceeEEEecCc-ccCcceeEecccc
Confidence 66777888888 7777777777777766554 45777888999 5554556667799999998 6667999999988
Q ss_pred CCeeEEEEEEecCCcEEEEEEecCCceEEEEec
Q 047869 1955 DMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1955 GkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels 1987 (2233)
-.|...+.. ..| +.|++-.+.|.|..-+++
T Consensus 248 ~~is~~~l~--p~g-n~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 248 NPISSTGLT--PSG-NFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred Ccceeeeec--CCC-cEEEEecccchhheeccc
Confidence 777776655 445 468899999999877776
No 110
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=27.20 E-value=3.2e+02 Score=32.96 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=39.2
Q ss_pred ccCceEEEee--CCeEEEEechh---hhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEE
Q 047869 1817 SSRGRLAVGE--GDKVAIFDVGQ---LIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLT 1891 (2233)
Q Consensus 1817 s~rGrLAVaE--gdKVTILqlsa---LLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLT 1891 (2233)
-..|+++|.+ .+.+.++++.. .+..++ ..++++-.- ..-...+.+|+++|.++.+++|.-=+--.|+.
T Consensus 73 ~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~-----~~~~~l~~~--~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 73 LGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD-----VQKISLGFP--NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE 145 (248)
T ss_dssp -STTEEEEEETTTTEEEEEEE----TT--EEE-----EEEEE---S-----SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred ECCCEEEEEEcCCCcEEEEEEeccccccchhh-----ceEEecccc--cCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence 3567777764 67788888843 121111 122222111 22334467999999999999997666667777
Q ss_pred ecC
Q 047869 1892 LNP 1894 (2233)
Q Consensus 1892 fss 1894 (2233)
++.
T Consensus 146 ~~~ 148 (248)
T PF06977_consen 146 VNG 148 (248)
T ss_dssp EES
T ss_pred Ecc
Confidence 765
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=27.18 E-value=7.7e+02 Score=33.85 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=66.1
Q ss_pred Eeecc--cCccceEEeecccceEEEEecCCCceeee----eeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcC
Q 047869 1868 HLAFN--SIVENYLTVAGYEDCQVLTLNPRGEVTDR----LAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQ 1941 (2233)
Q Consensus 1868 sLafN--P~nEdyLAVcGLkDC~VLTfss~GeV~DR----L~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~ 1941 (2233)
+..|. |-++..||| +.+|=+|--++.+- +.+| .-.+|..-.+-|.++.|+||....+-+.--+.+|.||+..
T Consensus 54 ~~sFs~~~n~eHiLav-adE~G~i~l~dt~~-~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAV-ADEDGGIILFDTKS-IVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEE-ecCCCceeeecchh-hhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 44454 555666665 56777776665442 2222 1234444578899999999754444455667999999999
Q ss_pred CCCCCcEEEEcCCCCeeEEEEEEec---------CCcEEEEEEecCC
Q 047869 1942 DNISPLHYFTLPDDMIVDATLVIAS---------RGKMFLIVLSECG 1979 (2233)
Q Consensus 1942 D~lSPvyyF~LpsGkIrDaTfv~~e---------~G~~~ILVLSS~G 1979 (2233)
..+-=+--|.=-+|.+..++|.... +|.+.|-.+--.|
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 8876553333345555666664322 4444555555444
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=26.88 E-value=8.6e+02 Score=34.77 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=70.3
Q ss_pred cceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCc
Q 047869 1862 VRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLS 1940 (2233)
Q Consensus 1862 VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS 1940 (2233)
=+-+|+.+...| ++.|||-||+.+=-|+-=....+.+-++.-|- .+++-+.|.|--|+ ||.-+.| .||||+.+
T Consensus 128 H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~----s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 128 HDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ----SLVKGVSWDPIGKY-FASQSDDRTLKVWRTS 201 (942)
T ss_pred CCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeeccc----ccccceEECCccCe-eeeecCCceEEEEEcc
Confidence 345788999999 99999999998754432223333333333333 34666789999887 8877777 89999966
Q ss_pred CC----------CCCCcEEEEc-----CCCCeeEEEEEEecCCcEEEEEEecCCceEEEEe
Q 047869 1941 QD----------NISPLHYFTL-----PDDMIVDATLVIASRGKMFLIVLSECGSLYRLEL 1986 (2233)
Q Consensus 1941 ~D----------~lSPvyyF~L-----psGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qel 1986 (2233)
.= .-+|.++|.+ |.|++.-+.-.++ +|...+-++.-+++-+-+.+
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n-~~~~~~~IieR~tWk~~~~L 261 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN-GGKSTIAIIERGTWKVDKDL 261 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc-CCcceeEEEecCCceeeeee
Confidence 51 1134444332 4555444433322 34455555555555554444
No 113
>TIGR01171 rplB_bact ribosomal protein L2, bacterial/organellar. This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts.
Probab=26.47 E-value=1.3e+03 Score=28.70 Aligned_cols=130 Identities=20% Similarity=0.272 Sum_probs=88.5
Q ss_pred cccccccccccccceEEEEeecccCccceEEeecccc-eEEEEecCCCc-eeeeee------ee----ecc----CCceE
Q 047869 1850 DKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYED-CQVLTLNPRGE-VTDRLA------IE----LAL----QGAYI 1913 (2233)
Q Consensus 1850 dKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkD-C~VLTfss~Ge-V~DRL~------Le----L~L----eg~fI 1913 (2233)
+.++..+- ...++=.|++|-++|.-..+||.+=+.| ..-+.+.+.|- +.|.+. ++ +.| .|.+|
T Consensus 61 R~IDf~r~-~~~i~g~V~~IeyDP~Rsa~IAlv~~~~g~~~YIlap~gl~~Gd~I~~g~~~~i~~Gn~lpL~~IP~Gt~I 139 (273)
T TIGR01171 61 RIIDFKRN-KDGIPAKVAAIEYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVISGPEAPIKPGNALPLRNIPVGTTV 139 (273)
T ss_pred ceeecccc-cCCCcEEEEEEEeCCCCCcCEEEEEecCCcEEEEEccCCCCCCCEEEECCCCCCCCcCCcccccCCCCCEE
Confidence 44444442 1234457999999999999999997765 55677767762 222222 11 111 38899
Q ss_pred EEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeE------EEEEEecCCcEEEEEEecCCceEEE
Q 047869 1914 RRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVD------ATLVIASRGKMFLIVLSECGSLYRL 1984 (2233)
Q Consensus 1914 IKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrD------aTfv~~e~G~~~ILVLSS~G~LY~Q 1984 (2233)
-+++--||.-.+||=+.-.|..|-. ++ .=.....||+|+++. ||+....++......+-.+|.-+.-
T Consensus 140 ~NIE~~pg~Ggkl~RsAGt~A~ii~--k~--~~~~~vkLPSGe~r~i~~~c~AtiG~Vsn~~~~~~~~gKAG~~r~l 212 (273)
T TIGR01171 140 HNIELKPGKGGQLARSAGTSAQILA--KE--GGYVTLRLPSGEMRMVLKECRATIGEVGNEDHNNIVLGKAGRSRWL 212 (273)
T ss_pred EEEEecCCCCceEEEecCCeEEEEE--ec--CCEEEEECCCCCeEEECCcCeEEEEEccCCchhccEeccchhheeC
Confidence 9999999999999998888988873 33 234467899999865 5665555555555666678877764
No 114
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=62 Score=45.24 Aligned_cols=71 Identities=28% Similarity=0.524 Sum_probs=58.3
Q ss_pred EEEeecccCccceEEeecccceEEEEecCC-CceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcC
Q 047869 1866 IVHLAFNSIVENYLTVAGYEDCQVLTLNPR-GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQ 1941 (2233)
Q Consensus 1866 VlsLafNP~nEdyLAVcGLkDC~VLTfss~-GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~ 1941 (2233)
|++|.-||..+++|+-|| ||-.|+..|.+ |+|...+ .-.|+.+.++.|-|.....+|++.-+ -|.||-|-.
T Consensus 256 ilslsWc~~D~~lllSsg-kD~~ii~wN~~tgEvl~~~----p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSG-KDNRIICWNPNTGEVLGEL----PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eeeeccCCCCchhhhccc-CCCCeeEecCCCceEeeec----CCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 789999999999999999 56677777654 6666654 44899999999999999999887766 899998743
No 115
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=26.26 E-value=8.3e+02 Score=31.34 Aligned_cols=93 Identities=18% Similarity=0.302 Sum_probs=53.8
Q ss_pred CeEEEEeCcCCCCC-----CcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccc
Q 047869 1932 KFVKIYDLSQDNIS-----PLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDR 2006 (2233)
Q Consensus 1932 ~FVKIYDLS~D~lS-----PvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~ 2006 (2233)
..|.|-||.....- |-|+-..|.|+= ..+-+ ..+|.+.-+.+=++|... |..+.-.+...=++-
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~-~F~~l-C~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f-------- 186 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR-GFSML-CGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLF-------- 186 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEEEEEEETT-EEEEE-ETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B---------
T ss_pred CeEEEEECCCCceeeeecCCCEEEEEecCCC-ceEEE-ecCCceEEEEECCCCCEe-EeeccccCCCCcccc--------
Confidence 46677777766553 778888887763 34433 367888888888888886 443321111000000
Q ss_pred cccCCeEEEEecc-ccceeeEEecCCcEEEEEcCCCc
Q 047869 2007 EIHAKGLSLYFSS-TYKLLFLSFQDGTTLVGRLSPNA 2042 (2233)
Q Consensus 2007 q~~~~GVSVyYS~-tl~LLF~SY~~G~Sf~a~Ls~~~ 2042 (2233)
.. + .|+. .-+++|+|| +|..|-+.++...
T Consensus 187 --~~-~---~~~~~~~~~~F~Sy-~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 187 --EH-P---AYSRDGGRLYFVSY-EGNVYSADLSGDS 216 (342)
T ss_dssp --S------EEETTTTEEEEEBT-TSEEEEEEETTSS
T ss_pred --cc-c---ceECCCCeEEEEec-CCEEEEEeccCCc
Confidence 11 1 1222 346889998 5788888886654
No 116
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=25.41 E-value=1.4e+02 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.510 Sum_probs=21.9
Q ss_pred CceEEEeEEecCCCceEEEEec-CeEEEEe
Q 047869 1910 GAYIRRVDWVPGSPVQLMVVTN-KFVKIYD 1938 (2233)
Q Consensus 1910 g~fIIKa~WLPGSQt~LAVVT~-~FVKIYD 1938 (2233)
...|..+.|-|..+. ||.+.. ..|+|||
T Consensus 11 ~~~i~~i~~~~~~~~-~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNF-LASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSE-EEEEETTSEEEEEE
T ss_pred CCcEEEEEEeccccc-ceeeCCCCEEEEEC
Confidence 567999999999655 554444 6999998
No 117
>PRK03629 tolB translocation protein TolB; Provisional
Probab=24.91 E-value=9.8e+02 Score=30.48 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=76.0
Q ss_pred EeecccCccceEEeec--ccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC--eEEEEeCcCCC
Q 047869 1868 HLAFNSIVENYLTVAG--YEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK--FVKIYDLSQDN 1943 (2233)
Q Consensus 1868 sLafNP~nEdyLAVcG--LkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~--FVKIYDLS~D~ 1943 (2233)
+.+++| ++++||+.. -.+.+|..++.++.-..++. -....+....|-|+.+. |+.+..+ ..+||.+..+.
T Consensus 247 ~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt----~~~~~~~~~~wSPDG~~-I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 247 APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVT----DGRSNNTEPTWFPDSQN-LAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc----CCCCCcCceEECCCCCE-EEEEeCCCCCceEEEEECCC
Confidence 467888 778888752 22234555544432222221 12334667899998765 6655543 46788655444
Q ss_pred CCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCC--ceEEEEecccCCCccccceeeeecccccccCCeEEEEecccc
Q 047869 1944 ISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECG--SLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTY 2021 (2233)
Q Consensus 1944 lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G--~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl 2021 (2233)
-.+. ...-..+.... ....++|+.++++....| +||..++.. + ....+++. . ...+..+|++-
T Consensus 321 g~~~-~lt~~~~~~~~--~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g--~~~~Lt~~----~-----~~~~p~~SpDG 385 (429)
T PRK03629 321 GAPQ-RITWEGSQNQD--ADVSSDGKFMVMVSSNGGQQHIAKQDLAT-G--GVQVLTDT----F-----LDETPSIAPNG 385 (429)
T ss_pred CCeE-EeecCCCCccC--EEECCCCCEEEEEEccCCCceEEEEECCC-C--CeEEeCCC----C-----CCCCceECCCC
Confidence 3221 12222222222 333578876665554444 466666541 1 12222221 1 12245678888
Q ss_pred ceeeEEecCC-cEEEEEcC
Q 047869 2022 KLLFLSFQDG-TTLVGRLS 2039 (2233)
Q Consensus 2022 ~LLF~SY~~G-~Sf~a~Ls 2039 (2233)
++|.++-.+| ...+.-++
T Consensus 386 ~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CEEEEEEcCCCceEEEEEE
Confidence 7666666544 44444443
No 118
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.43 E-value=1.4e+03 Score=33.80 Aligned_cols=192 Identities=17% Similarity=0.224 Sum_probs=117.0
Q ss_pred cCceEEEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEe---ecccCccceEEeecccceEEEEecC
Q 047869 1818 SRGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHL---AFNSIVENYLTVAGYEDCQVLTLNP 1894 (2233)
Q Consensus 1818 ~rGrLAVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsL---afNP~nEdyLAVcGLkDC~VLTfss 1894 (2233)
..||.++-.+.++-+++-.+ ++.. ...|-+..+.|. -.++.- .|+|.-...|+|+=..|..|+.++-
T Consensus 89 eI~RaWiTiDn~L~lWny~~--~~e~---~~~d~~shtIl~-----V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 89 EIGRAWITIDNNLFLWNYES--DNEL---AEYDGLSHTILK-----VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred hhcceEEEeCCeEEEEEcCC--CCcc---ccccchhhhhee-----eeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 46889999999999999865 2222 234444444443 333333 4779999999999999999999832
Q ss_pred C------CceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCe-----------------EEEEeCcCCCC---CCcE
Q 047869 1895 R------GEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKF-----------------VKIYDLSQDNI---SPLH 1948 (2233)
Q Consensus 1895 ~------GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~F-----------------VKIYDLS~D~l---SPvy 1948 (2233)
. +...++ +....+|..++.+.-..+-+. -.+.++- -+-|+|++..+ .|+
T Consensus 159 ~~~~~~~~~f~~~--~~i~~dg~~V~~I~~t~nGRI--F~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs- 233 (1311)
T KOG1900|consen 159 DEFTGELSIFNTS--FKISVDGVSVNCITYTENGRI--FFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS- 233 (1311)
T ss_pred ccccCcccccccc--eeeecCCceEEEEEeccCCcE--EEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-
Confidence 2 122223 455668999999885444433 3333332 33455555443 377
Q ss_pred EEEcC---CCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCcc--------------ccceeeeecc--ccccc
Q 047869 1949 YFTLP---DDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGA--------------TPLKEIIQFN--DREIH 2009 (2233)
Q Consensus 1949 yF~Lp---sGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~--------------~~ltEvvq~~--~~q~~ 2009 (2233)
.+.+| .+-|+-.++- +++ .++.++|++|-+=.-+++..|-.+. ...++.+..+ ...+.
T Consensus 234 ~~~~~~~~~dpI~qi~ID-~SR--~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~Ivs 310 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQITID-NSR--NILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVS 310 (1311)
T ss_pred hhcCCCCCCCcceeeEec-ccc--ceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEE
Confidence 66677 4457777754 343 4888899999888888875443222 2222221111 11224
Q ss_pred CCeEEEEeccccceeeEE
Q 047869 2010 AKGLSLYFSSTYKLLFLS 2027 (2233)
Q Consensus 2010 ~~GVSVyYS~tl~LLF~S 2027 (2233)
-.+++.++|.++.++-+.
T Consensus 311 I~~l~~~es~~l~LvA~t 328 (1311)
T KOG1900|consen 311 ISPLSASESNDLHLVAIT 328 (1311)
T ss_pred ecccCcccccceeEEEEe
Confidence 457888888888775443
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.42 E-value=2.5e+02 Score=35.42 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=59.1
Q ss_pred cccccccceEEEEeecccCccceEEeeccc------ceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCC---CceE
Q 047869 1856 PLSRNIVRFEIVHLAFNSIVENYLTVAGYE------DCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGS---PVQL 1926 (2233)
Q Consensus 1856 rLSsa~VpFeVlsLafNP~nEdyLAVcGLk------DC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGS---Qt~L 1926 (2233)
|++++.-+.--++=...-..+.+|||--.+ +.+|+..+.+|.---+++ +|.--+.-|+.+-|-|.. -..|
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva-~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA-ELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh-hcCCCCCcceeeeeccccCCceeeE
Confidence 555555554444444445678899998877 899999999973222211 222227789999999975 3457
Q ss_pred EEEecCeEEEEeCcC
Q 047869 1927 MVVTNKFVKIYDLSQ 1941 (2233)
Q Consensus 1927 AVVT~~FVKIYDLS~ 1941 (2233)
||+|-+-|+||.+-.
T Consensus 243 AvA~kDgv~I~~v~~ 257 (361)
T KOG2445|consen 243 AVATKDGVRIFKVKV 257 (361)
T ss_pred EEeecCcEEEEEEee
Confidence 999999999999973
No 120
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=24.39 E-value=1.6e+03 Score=28.77 Aligned_cols=231 Identities=15% Similarity=0.169 Sum_probs=142.4
Q ss_pred cccccccccccchHHhHH-HhhcCcccccceecccCce-EEEe---eC-----CeEEEEechhhhcccccCCcccccccc
Q 047869 1785 SLDLKIKADYSNARELKS-HLASGSLVKSLLSVSSRGR-LAVG---EG-----DKVAIFDVGQLIGQATIQPVTADKTNV 1854 (2233)
Q Consensus 1785 SFE~kir~d~~~~relks-~l~sGq~iRqLLSas~rGr-LAVa---Eg-----dKVTILqlsaLLkQad~s~~skdKlTL 1854 (2233)
-+-..++++-++.+-+.. ....--.|+.+-++...+| ||-. -+ -+.+|+++-.=++|+..+ .=-.+
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~----tlE~v 115 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS----TLECV 115 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc----hhhHh
Confidence 333445555555443222 2233446777766665544 4421 11 368899998888885532 22344
Q ss_pred ccccccccceEEEEeecccCccceEEeecccceEEEEecCCCceeeeeeeeeccCC-ceEEEeEEecCCCceEEEEecC-
Q 047869 1855 KPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQG-AYIRRVDWVPGSPVQLMVVTNK- 1932 (2233)
Q Consensus 1855 trLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg-~fIIKa~WLPGSQt~LAVVT~~- 1932 (2233)
.+|-...|+ .|--|.+.| |.+.||-.-=.+..++.+..+-+++-.+......++ --.--..|=|-.+.....+|++
T Consensus 116 ~~Ldteavg-~i~cvew~P-ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~ 193 (370)
T KOG1007|consen 116 ASLDTEAVG-KINCVEWEP-NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS 193 (370)
T ss_pred hcCCHHHhC-ceeeEEEcC-CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC
Confidence 666667788 888899999 888888777778888888777666555544444442 2356677999777666555655
Q ss_pred eEEEEeCcCCCCCCcEEEEcCCCC---eeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeeccccccc
Q 047869 1933 FVKIYDLSQDNISPLHYFTLPDDM---IVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIH 2009 (2233)
Q Consensus 1933 FVKIYDLS~D~lSPvyyF~LpsGk---IrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~ 2009 (2233)
.+.-||+-.++ .++.+-.-- +||.-| +++.+.+++---.+||+-+=+.++.. ++++|. ++ -.
T Consensus 194 tl~~~D~RT~~----~~~sI~dAHgq~vrdlDf--Npnkq~~lvt~gDdgyvriWD~R~tk----~pv~el---~~--Hs 258 (370)
T KOG1007|consen 194 TLQFWDLRTMK----KNNSIEDAHGQRVRDLDF--NPNKQHILVTCGDDGYVRIWDTRKTK----FPVQEL---PG--HS 258 (370)
T ss_pred cEEEEEccchh----hhcchhhhhcceeeeccC--CCCceEEEEEcCCCccEEEEeccCCC----cccccc---CC--Cc
Confidence 89999998665 234443322 566653 46666677777788999887776422 222221 11 12
Q ss_pred CCeEEEEeccccceeeEEec-CCcEEEE
Q 047869 2010 AKGLSLYFSSTYKLLFLSFQ-DGTTLVG 2036 (2233)
Q Consensus 2010 ~~GVSVyYS~tl~LLF~SY~-~G~Sf~a 2036 (2233)
.=--+|.|.+.+.-|++|=. +-+..+.
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLS 286 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEE
Confidence 22457889999988888864 3344433
No 121
>CHL00052 rpl2 ribosomal protein L2
Probab=23.89 E-value=1.4e+03 Score=28.69 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=87.3
Q ss_pred cccccccccccccceEEEEeecccCccceEEeecccc-eEEEEecCCCc-eeeeee------e----eecc----CCceE
Q 047869 1850 DKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYED-CQVLTLNPRGE-VTDRLA------I----ELAL----QGAYI 1913 (2233)
Q Consensus 1850 dKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkD-C~VLTfss~Ge-V~DRL~------L----eL~L----eg~fI 1913 (2233)
+.++.++ ....++-.|++|-++|.-.-+||.+=+.| -.-+.+.+.|- +.|.+. + -+.| +|.+|
T Consensus 61 R~IDf~r-~~~~i~~~V~~IeyDP~Rsa~IAlv~~~~g~~~YIlAp~gl~~Gd~I~~g~~~~i~~Gn~lpL~~IP~Gt~I 139 (273)
T CHL00052 61 RKIDFRR-NKKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGLKIGDTIVSGTEAPIKIGNALPLTNIPLGTAI 139 (273)
T ss_pred ceecccc-ccCCCcEEEEEEEECCCCCccEEEEEeCCCcEEEEEccCCCCCCCEEEeCCCCCCCcccccccccCCCCCEE
Confidence 3444444 23457899999999999999999997776 45566666652 222221 1 1111 38899
Q ss_pred EEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcCCCCeeE------EEEEEecCCcEEEEEEecCCceEEE
Q 047869 1914 RRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVD------ATLVIASRGKMFLIVLSECGSLYRL 1984 (2233)
Q Consensus 1914 IKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~LpsGkIrD------aTfv~~e~G~~~ILVLSS~G~LY~Q 1984 (2233)
-+++=.||.-.+||=+.-.|..|-. ++ .=.....||+|+++. ||+....++......+-.+|.-+..
T Consensus 140 ~NIE~~pg~Ggk~~RsAGt~A~ii~--k~--~~~~~vkLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG~~r~l 212 (273)
T CHL00052 140 HNIEITPGKGGQLARAAGAVAKLIA--KE--GKSATLKLPSGEVRLISKNCSATIGQVGNVDVNNKSLGKAGSKRWL 212 (273)
T ss_pred EEEEecCCCCceEEEecCCeEEEEE--ec--CCEEEEECCCCCeEEECCcCeEEEEEccCCchhhcEecchhhhhcC
Confidence 9999999999999988888888864 22 224567899999865 4554444444444555667766653
No 122
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=23.15 E-value=8.7e+02 Score=32.85 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=71.3
Q ss_pred EEEeEEecCCCceEEEEecC-eEEEEeCcCCC-------CCCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEE
Q 047869 1913 IRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDN-------ISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRL 1984 (2233)
Q Consensus 1913 IIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~-------lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Q 1984 (2233)
.|++.=.|+++.-|+.++-+ ++|+|.| +++ +-|.|+|.-=.|.|.-.++. ++| -+++--+-+|.|-.=
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnL-qk~~~s~~~~~epi~tfraH~gPVl~v~v~--~n~-~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNL-QKAKKSAEKDVEPILTFRAHEGPVLCVVVP--SNG-EHCYSGGIDGTIRCW 371 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhh-cccCCccccceeeeEEEecccCceEEEEec--CCc-eEEEeeccCceeeee
Confidence 55566667787766655544 8899999 332 22888888888887655533 445 366777778888777
Q ss_pred EecccCCCccccceeeeecccccccCCeE-EEEeccccceeeEEe-cCCcEEEE
Q 047869 1985 ELSVEGNVGATPLKEIIQFNDREIHAKGL-SLYFSSTYKLLFLSF-QDGTTLVG 2036 (2233)
Q Consensus 1985 els~s~d~g~~~ltEvvq~~~~q~~~~GV-SVyYS~tl~LLF~SY-~~G~Sf~a 2036 (2233)
.++..++....+-..++.-.-. -..+.| .+.||.+-+-| +|+ .+||...=
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~L-lscs~DgTvr~w 423 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRL-LSCSSDGTVRLW 423 (577)
T ss_pred ccCCCCCcccccCcchhcccee-ccccceeeeeecccccce-eeecCCceEEee
Confidence 7775555444442222211111 122244 67888887774 344 57776653
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=23.06 E-value=1.4e+03 Score=29.42 Aligned_cols=188 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred hHHhHHHhhcCcccccceecccCce-EEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccC
Q 047869 1797 ARELKSHLASGSLVKSLLSVSSRGR-LAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSI 1874 (2233)
Q Consensus 1797 ~relks~l~sGq~iRqLLSas~rGr-LAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~ 1874 (2233)
.+++-..++.+. ...+.-++-|. |||+ -.|.|.|++. ++..+-+.=++-++ .|-++..+|+
T Consensus 14 PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~--------------~T~~iar~lsaH~~-pi~sl~WS~d 76 (405)
T KOG1273|consen 14 PEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDF--------------DTFRIARMLSAHVR-PITSLCWSRD 76 (405)
T ss_pred hHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEc--------------cccchhhhhhcccc-ceeEEEecCC
Q ss_pred ccceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcC
Q 047869 1875 VENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLP 1953 (2233)
Q Consensus 1875 nEdyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~Lp 1953 (2233)
-...|----=+-|...-+ .+|+..-|+.. ..-|-.|.|.|..+....+.-.+ .--+-+++- |+|.++-.
T Consensus 77 gr~LltsS~D~si~lwDl-~~gs~l~rirf-----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~----~~h~~Lp~ 146 (405)
T KOG1273|consen 77 GRKLLTSSRDWSIKLWDL-LKGSPLKRIRF-----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD----PKHSVLPK 146 (405)
T ss_pred CCEeeeecCCceeEEEec-cCCCceeEEEc-----cCccceeeeccccCCeEEEEEecCCcEEEEecC----CceeeccC
Q ss_pred CC----CeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCe
Q 047869 1954 DD----MIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKG 2012 (2233)
Q Consensus 1954 sG----kIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~G 2012 (2233)
++ ++.+..-+++..| .+|++-++.|.+..-+-+.--=..++..|.+.++....+..+|
T Consensus 147 d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred CCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
No 124
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.41 E-value=2.3e+03 Score=30.06 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=99.9
Q ss_pred hcCcccccceecccCceEEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeec
Q 047869 1805 ASGSLVKSLLSVSSRGRLAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAG 1883 (2233)
Q Consensus 1805 ~sGq~iRqLLSas~rGrLAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcG 1883 (2233)
..|+.++-...... |.||.+ --++|-|++..- +... . +-..-|=.|-++.|+|--...|.+.|
T Consensus 104 He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~---~~~t-------h-----~fkG~gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 104 HEAPVITMAFDPTG-TLLATGGADGRVKVWDIKN---GYCT-------H-----SFKGHGGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred cCCCeEEEEEcCCC-ceEEeccccceEEEEEeeC---CEEE-------E-----EecCCCceEEEEEeCCccchhheeec
Confidence 34555544333333 666764 666777777632 1110 1 11233456889999998777899999
Q ss_pred ccceEEEEecCCCceeeeeeeeec-cCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCCCcEEEEcC-CCCeeEEE
Q 047869 1884 YEDCQVLTLNPRGEVTDRLAIELA-LQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLP-DDMIVDAT 1961 (2233)
Q Consensus 1884 LkDC~VLTfss~GeV~DRL~LeL~-Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lSPvyyF~Lp-sGkIrDaT 1961 (2233)
.-|-.|.-.|-+-... .++.. ....-++-..-.+.+.+.+++-.-+-+-||||- .-..-=++| ...+..++
T Consensus 168 ~~D~~v~vwnl~~~~t---cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~----~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKRT---CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV----QYKKLKTLPLYESLESVV 240 (775)
T ss_pred CCCceEEEEEcccCch---HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh----hhhhhheechhhheeeEE
Confidence 9999999988773222 33222 235557777778889888888888899999992 112222334 23567777
Q ss_pred EEEecCCcE--EEEEEecCCceEEEEec
Q 047869 1962 LVIASRGKM--FLIVLSECGSLYRLELS 1987 (2233)
Q Consensus 1962 fv~~e~G~~--~ILVLSS~G~LY~Qels 1987 (2233)
+...+.|.. +++...++|.+=+-+.+
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~e 268 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSE 268 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecc
Confidence 766555544 77777777776554443
No 125
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=22.26 E-value=8.2e+02 Score=31.73 Aligned_cols=141 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEeecccceEEEEe-cCCCceeeeee-----eeeccC--CceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEE
Q 047869 1879 LTVAGYEDCQVLTL-NPRGEVTDRLA-----IELALQ--GAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHY 1949 (2233)
Q Consensus 1879 LAVcGLkDC~VLTf-ss~GeV~DRL~-----LeL~Le--g~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyy 1949 (2233)
+++.|-+||.++-. +..|.|+--.. +.++.+ .+-|--+-|-..-.- .|+-..+ .|-|||++... |.|-
T Consensus 247 ~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL-~A~G~vdG~i~iyD~a~~~--~R~~ 323 (399)
T KOG0296|consen 247 TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL-AACGSVDGTIAIYDLAAST--LRHI 323 (399)
T ss_pred eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch-hhcccccceEEEEecccch--hhee
Q ss_pred EEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEec
Q 047869 1950 FTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQ 2029 (2233)
Q Consensus 1950 F~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~ 2029 (2233)
+..+.| |++..+. +.-+++..+.+|.+|.-+.+ .|.-+-.|--|+...|=|+|.
T Consensus 324 c~he~~-V~~l~w~----~t~~l~t~c~~g~v~~wDaR---------------------tG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 324 CEHEDG-VTKLKWL----NTDYLLTACANGKVRQWDAR---------------------TGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred ccCCCc-eEEEEEc----CcchheeeccCceEEeeecc---------------------ccceEEEEecCchheeEEEEc
Q ss_pred CCcEEEEEcCCCcccccceeEEEE
Q 047869 2030 DGTTLVGRLSPNAASLSEVSYVFE 2053 (2233)
Q Consensus 2030 ~G~Sf~a~Ls~~~~sv~eis~Vfe 2053 (2233)
-.+.++-..+..+ ...||+
T Consensus 378 ~~~~~vvT~s~D~-----~a~VF~ 396 (399)
T KOG0296|consen 378 PQKRLVVTVSDDN-----TALVFE 396 (399)
T ss_pred CCCcEEEEecCCC-----eEEEEe
No 126
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=21.94 E-value=4.3e+02 Score=32.93 Aligned_cols=143 Identities=15% Similarity=0.237 Sum_probs=93.3
Q ss_pred cCceEEEe-eCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeecccceEEEEecCCC
Q 047869 1818 SRGRLAVG-EGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRG 1896 (2233)
Q Consensus 1818 ~rGrLAVa-EgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLkDC~VLTfss~G 1896 (2233)
.++..||. ..|.|+.++. .+.+++....-+|+|..+.+|-.|+=|.+-.|+--++||.+ |.=
T Consensus 117 ~g~~~~~~~kdD~it~id~----------------r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy-psL 179 (313)
T KOG1407|consen 117 DGEYIAVGNKDDRITFIDA----------------RTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY-PSL 179 (313)
T ss_pred CCCEEEEecCcccEEEEEe----------------cccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEec-ccc
Confidence 45566665 6667766654 45567888899999999999988888999999999999998 432
Q ss_pred ceeeeeeeeeccCCceEEEeEEecCCCceEEEEecC-eEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEE
Q 047869 1897 EVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNK-FVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVL 1975 (2233)
Q Consensus 1897 eV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~-FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVL 1975 (2233)
+-++-+.-|+ .=++.+..-|.-.. +|+=.++ -|..||+..=.. .-.|.=.+=.||..+|-+ +|+ +|--.
T Consensus 180 kpv~si~AH~----snCicI~f~p~Gry-fA~GsADAlvSLWD~~ELiC--~R~isRldwpVRTlSFS~--dg~-~lASa 249 (313)
T KOG1407|consen 180 KPVQSIKAHP----SNCICIEFDPDGRY-FATGSADALVSLWDVDELIC--ERCISRLDWPVRTLSFSH--DGR-MLASA 249 (313)
T ss_pred ccccccccCC----cceEEEEECCCCce-EeeccccceeeccChhHhhh--heeeccccCceEEEEecc--Ccc-eeecc
Confidence 2222222232 33667777788766 8888888 899999865332 222222233578777653 453 34444
Q ss_pred ecCCceEEEEec
Q 047869 1976 SECGSLYRLELS 1987 (2233)
Q Consensus 1976 SS~G~LY~Qels 1987 (2233)
|++=+|=+-+++
T Consensus 250 SEDh~IDIA~ve 261 (313)
T KOG1407|consen 250 SEDHFIDIAEVE 261 (313)
T ss_pred CccceEEeEecc
Confidence 455444444444
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.57 E-value=6.3e+02 Score=33.80 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=94.5
Q ss_pred ceEEeecccceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcCCCCC---------Cc
Q 047869 1877 NYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNIS---------PL 1947 (2233)
Q Consensus 1877 dyLAVcGLkDC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~D~lS---------Pv 1947 (2233)
.+.--||-.=+.|--++..|.-.---++.-...+||||-+--+|++.+.|.==-+-.|.||||+....- |-
T Consensus 432 rhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 432 RHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred ceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchh
Confidence 344455666667888877755444444455556999999999999999886555668999999865421 22
Q ss_pred EE-----------E-EcCCCCee-----EEEEEEe----cCCcEEEEEEecCCceEE-EEecccCCCccccceeeeeccc
Q 047869 1948 HY-----------F-TLPDDMIV-----DATLVIA----SRGKMFLIVLSECGSLYR-LELSVEGNVGATPLKEIIQFND 2005 (2233)
Q Consensus 1948 yy-----------F-~LpsGkIr-----DaTfv~~----e~G~~~ILVLSS~G~LY~-Qels~s~d~g~~~ltEvvq~~~ 2005 (2233)
+| | -+.+|+|+ +-|.+-+ .+|..+ |.+|.+|+-.+ --+. .-.-.-.+-|..|+--
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc-Idis~dGtklWTGGlD--ntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC-IDISKDGTKLWTGGLD--NTVRCWDLREGRQLQQ 588 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee-EEecCCCceeecCCCc--cceeehhhhhhhhhhh
Confidence 21 2 23345442 2333321 245433 44456665332 1110 0001112334445545
Q ss_pred ccccCCeEEEEeccccceeeEEecCCcEEEEEc
Q 047869 2006 REIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRL 2038 (2233)
Q Consensus 2006 ~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~L 2038 (2233)
.+...-=+|+-|+++-..|-+.++++..-+-..
T Consensus 589 hdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 589 HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred hhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 556677889999999999999999887766443
No 128
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=20.60 E-value=1.1e+03 Score=32.04 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=107.4
Q ss_pred EEeecccCccceEEeecccceEEEEecCCCceeeee-----eeeeccCCceEEEeEEecCCCceEEEEecCeEEEEeCcC
Q 047869 1867 VHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRL-----AIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQ 1941 (2233)
Q Consensus 1867 lsLafNP~nEdyLAVcGLkDC~VLTfss~GeV~DRL-----~LeL~Leg~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS~ 1941 (2233)
.+|+|=|. +.+.-+.|-.+=+|++-+..|.-..-- +..+..-...|.-+.|-|=+.-.+..+-.-.||||.-..
T Consensus 351 t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~ 429 (555)
T KOG1587|consen 351 TSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV 429 (555)
T ss_pred eeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC
Confidence 35667554 444467799999999988777544431 222223356788889999887777777777999998765
Q ss_pred CCCCCcEEEEcCCCCeeEEEEEEecCCcEEEEEE-ecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccc
Q 047869 1942 DNISPLHYFTLPDDMIVDATLVIASRGKMFLIVL-SECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSST 2020 (2233)
Q Consensus 1942 D~lSPvyyF~LpsGkIrDaTfv~~e~G~~~ILVL-SS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~t 2020 (2233)
..+|.+-|-.-++.+.|+. |. -.+-.+++. ..+|+|+.=++..+......... +. ....+ -+..++.
T Consensus 430 -~~~Pl~~~~~~~~~v~~va-WS--ptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~~--~~~l~----~~~~s~~ 497 (555)
T KOG1587|consen 430 -IASPLLSLDSSPDYVTDVA-WS--PTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK--VC--SPALT----RVRWSPN 497 (555)
T ss_pred -CCCcchhhhhccceeeeeE-Ec--CcCceEEEEEcCCCceehhhhhccccCCccccc--cc--ccccc----eeecCCC
Confidence 5689999988888888877 53 233344444 45999998777643222111100 00 00011 1466777
Q ss_pred cceeeEEecCCcEEEEEcCCC
Q 047869 2021 YKLLFLSFQDGTTLVGRLSPN 2041 (2233)
Q Consensus 2021 l~LLF~SY~~G~Sf~a~Ls~~ 2041 (2233)
.++|.+.=.+|++++-.|+.+
T Consensus 498 g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CcEEEEecCCCcEEEEEcCch
Confidence 899999999999999888544
No 129
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.32 E-value=76 Score=35.81 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=36.7
Q ss_pred hhhHHHHhhccccceecccchhHHHHHHHHHHHhhhh--------------hccccccCccccchhH
Q 047869 92 SLGHVIASASRSLAVEQAGPVIVAVMQELLEFAVCYL--------------ERSEFDNDDFSVQNHM 144 (2233)
Q Consensus 92 sl~~~i~~~~rslsv~q~~p~~v~v~q~~~ef~~~~l--------------e~s~~~~~d~~~~~~~ 144 (2233)
-=+.+|++..|||.+++.||.+ +-++||||-.|- +|...+.+|....+.|
T Consensus 14 kDa~~i~~iL~s~GI~eyEprV---i~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~ 77 (148)
T KOG3334|consen 14 KDARVIASILKSLGIQEYEPRV---INQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQM 77 (148)
T ss_pred HHHHHHHHHHHHcCccccChHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 3468899999999999999953 457777777663 3555666676666555
No 130
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=20.19 E-value=5.7e+02 Score=34.01 Aligned_cols=108 Identities=22% Similarity=0.311 Sum_probs=80.7
Q ss_pred EeeCCeEEEEechhhhcccccCCcccccccc-ccccccccceEEEEeecccCccceEEeecc--------cceEEEEecC
Q 047869 1824 VGEGDKVAIFDVGQLIGQATIQPVTADKTNV-KPLSRNIVRFEIVHLAFNSIVENYLTVAGY--------EDCQVLTLNP 1894 (2233)
Q Consensus 1824 VaEgdKVTILqlsaLLkQad~s~~skdKlTL-trLSsa~VpFeVlsLafNP~nEdyLAVcGL--------kDC~VLTfss 1894 (2233)
...|=||++||++..-. |..++|..+ .+-+..++-.+=..+.|.| ..+.||+-=. ...+|+.+++
T Consensus 398 ~~~GlKisLFDVSD~~~-----P~e~~~~~iG~~~s~S~a~~dhkAfl~~~-~~~ll~~Pv~~~~~~~~~~g~~v~~i~~ 471 (521)
T PF09826_consen 398 WTQGLKISLFDVSDPAN-----PKELDKEVIGDRGSYSEALYDHKAFLFDK-EKNLLAFPVSSSYGYFNFQGAYVFSIDP 471 (521)
T ss_pred ccceeEEEEEecCCCCC-----ccEeEEEEcCCCCccCccccCceEEEEeC-CCCEEEEEEEEccCccccceEEEEEEeC
Confidence 34556999999976543 334667777 6677777777777888877 4466666544 6788999997
Q ss_pred CCceeeeeeeeeccC----CceEEEeEEecCCCceEEEEecCeEEEEeCc
Q 047869 1895 RGEVTDRLAIELALQ----GAYIRRVDWVPGSPVQLMVVTNKFVKIYDLS 1940 (2233)
Q Consensus 1895 ~GeV~DRL~LeL~Le----g~fIIKa~WLPGSQt~LAVVT~~FVKIYDLS 1940 (2233)
+..+..+-.|+..-+ ...|.|+.-+.+. |-.++...||+|||.
T Consensus 472 ~~g~~~~g~i~h~~~~~~~~~~~~R~lyi~d~---lYtvS~~~i~~~~l~ 518 (521)
T PF09826_consen 472 EDGFTLKGKITHPSPDYYYSYQIQRSLYIGDT---LYTVSDNGIKAYDLN 518 (521)
T ss_pred CCCeEEEEEEEccCcccccccceeEEEEECCE---EEEEECCEEEEEehH
Confidence 777887777765543 3458888888874 889999999999986
Done!