BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047870
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 119
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKD 80
H LPLARIKK+MK + +VKMIS EAPI+F+K C++FI ELT R+W KRRTL +
Sbjct: 40 HQLPLARIKKVMK-ADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRS 98
Query: 81 DVASAVIATDIFDFLLTLV 99
D+A+A+ +D+FDFL+ +V
Sbjct: 99 DIAAALSKSDMFDFLIDIV 117
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
LPLARIKKIMK +DVKMIS EAP++F+KA ++FI ELT R+W T KRRTL +
Sbjct: 14 VQELPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 72
Query: 80 DDVASAVIATDIFDFLLTLVS 100
+D+A A+ D FDFL+ +V
Sbjct: 73 NDIAMAITKFDQFDFLIDIVP 93
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
LPLARIKKIMK +DVKMIS EAP++F+KA ++FI ELT R+W T KRRTL +
Sbjct: 17 VQELPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 75
Query: 80 DDVASAVIATDIFDFLLTLV 99
+D+A A+ D FDFL+ +V
Sbjct: 76 NDIAMAITKFDQFDFLIDIV 95
>pdb|1JFI|A Chain A, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 98
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTL 77
P ARIKKIM+ + +++ ++ P++ S+A ELF+E L K++ +T +T+
Sbjct: 12 FPPARIKKIMQ-TDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTM 65
>pdb|2BYK|A Chain A, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|C Chain C, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|A Chain A, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|C Chain C, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 140
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LPL+R++ IM KS D +I+ E + +K ELF+ L ++T + LK +
Sbjct: 20 LPLSRVRTIM-KSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEH 78
Query: 83 ASAVIATD-IFDFLLTLVSE 101
S V+ + +FLL +V +
Sbjct: 79 LSQVVNKNKNLEFLLQIVPQ 98
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 68
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A I +I+K +G + +S +A I +K E EE+ + + R+T+ +D
Sbjct: 2 ELPIAPIGRIIKNAG--AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 59
Query: 82 V 82
+
Sbjct: 60 I 60
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 69
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A I +I+K +G + +S +A I +K E EE+ + + R+T+ +D
Sbjct: 3 ELPIAPIGRIIKNAG--AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60
Query: 82 V 82
+
Sbjct: 61 I 61
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
MS R LP+A + +IMK + I+ +A + FI +T + Q K
Sbjct: 1 MSFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEK 60
Query: 74 RRTLLKDDVASAV 86
R+T+ +D+ A+
Sbjct: 61 RKTINGEDILFAM 73
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LP+A + +IMK + + I+ EA + FI +T + Q KR+T+ +D+
Sbjct: 8 LPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGEDI 67
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LP+A + +IMK + I+ +A + FI +T + Q KR+T+ +D+
Sbjct: 9 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 68
Query: 83 ASAV 86
A+
Sbjct: 69 LFAM 72
>pdb|1KU5|A Chain A, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1KU5|B Chain B, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 70
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A + ++++K+G + +S +A V ++ E + E+ K++ R+T+ +D
Sbjct: 6 ELPIAPVDRLIRKAGAE--RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVED 63
Query: 82 VASAV 86
+ A+
Sbjct: 64 IKLAI 68
>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From
Methanothermus Fervidus
Length = 69
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A I +I+K +G + +S +A I +K E ++ + + R+T+ +D
Sbjct: 2 ELPIAPIGRIIKDAG--AERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAED 59
Query: 82 VASAV 86
+ AV
Sbjct: 60 IELAV 64
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A I +I+K +G + +S +A I +K E ++ + + R+T+ +D
Sbjct: 2 ELPIAPIGRIIKDAG--AERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAED 59
Query: 82 VASAV 86
+ AV
Sbjct: 60 IELAV 64
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEEL 61
M+G+ GT L ++KK+ K + ++ E V+ C +F+E++
Sbjct: 1 MTGKTGTQLLA-DKLKKLQVKDFQSIPVVIHENVSVYDAICTMFLEDV 47
>pdb|3AZK|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
Length = 106
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 38 IRRLARRGG--VKRISGLIYEETRGVLQVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 94
>pdb|3DCM|X Chain X, Crystal Structure Of The Thermotoga Maritima Spout Family
Rna-Methyltransferase Protein Tm1570 In Complex With S-
Adenosyl-L-Methionine
Length = 192
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
SL L ++K ++ +D++ + GE P++F + + KR ++ + RR +++
Sbjct: 81 SLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAK-------KRENDISFEEGRRIIIE 131
>pdb|1P3I|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKHISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
>pdb|1BJA|A Chain A, Activation Domain Of The Phage T4 Transcription Factor
Mota
pdb|1BJA|B Chain B, Activation Domain Of The Phage T4 Transcription Factor
Mota
Length = 95
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 29 KKIMKKSGDDVKMISGEAPIVFSKACELFIEE 60
K +++KSGD + +I+GEA + S A L+ +E
Sbjct: 58 KGLVEKSGDGL-IITGEAQDIISNAATLYAQE 88
>pdb|3AZN|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 106
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 38 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 94
>pdb|3AZI|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
Length = 106
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 38 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 94
>pdb|1I1S|A Chain A, Solution Structure Of The Transcriptional Activation
Domain Of The Bacteriophage T4 Protein Mota
Length = 96
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 29 KKIMKKSGDDVKMISGEAPIVFSKACELFIEE 60
K +++KSGD + +I+GEA + S A L+ +E
Sbjct: 59 KGLVEKSGDGL-IITGEAQDIISNAATLYAQE 89
>pdb|3A6N|B Chain B, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|F Chain F, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|B Chain B, The Human Nucleosome Structure
pdb|3AFA|F Chain F, The Human Nucleosome Structure
pdb|3AV1|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|B Chain B, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|F Chain F, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 106
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 38 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 94
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG + F+E + + + T T KR+T+ DV A+
Sbjct: 35 IRRLARRGG--VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 91
>pdb|3C1B|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 102
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
>pdb|1P3B|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKAISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
>pdb|1ID3|B Chain B, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|F Chain F, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 102
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG + F+E + + S T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYAL 90
>pdb|1KX3|B Chain B, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|F Chain F, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|B Chain B, X-Ray Structure Of The Nucleosome Core Particle,
Ncp146b, At 2.6 A Resolution
pdb|1KX4|F Chain F, X-Ray Structure Of The Nucleosome Core Particle,
Ncp146b, At 2.6 A Resolution
pdb|1KX5|B Chain B, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|F Chain F, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1S32|B Chain B, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|F Chain F, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|B Chain B, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|F Chain F, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|BB Chain b, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|FF Chain f, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZLA|B Chain B, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|F Chain F, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|2FJ7|B Chain B, Crystal Structure Of Nucleosome Core Particle Containing
A Poly (Da.Dt) Sequence Element
pdb|2FJ7|F Chain F, Crystal Structure Of Nucleosome Core Particle Containing
A Poly (Da.Dt) Sequence Element
pdb|2IO5|C Chain C, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NZD|B Chain B, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|F Chain F, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|B Chain B, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|F Chain F, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|B Chain B, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|F Chain F, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1C|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C9K|D Chain D, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|H Chain H, Model Of Histone Octamer Tubular Crystals
pdb|3KUY|B Chain B, Dna Stretching In The Nucleosome Facilitates Alkylation
By An Intercalating Antitumor Agent
pdb|3KUY|F Chain F, Dna Stretching In The Nucleosome Facilitates Alkylation
By An Intercalating Antitumor Agent
pdb|3LJA|B Chain B, Using Soft X-Rays For A Detailed Picture Of Divalent
Metal Binding In The Nucleosome
pdb|3LJA|F Chain F, Using Soft X-Rays For A Detailed Picture Of Divalent
Metal Binding In The Nucleosome
pdb|3LEL|B Chain B, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|F Chain F, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|L Chain L, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|P Chain P, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|B Chain B, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|F Chain F, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|B Chain B, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|F Chain F, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|B Chain B, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|F Chain F, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|B Chain B, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|F Chain F, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3KXB|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|B Chain B, Crystal Structure Of The Chromatin Factor Rcc1 In
Complex With The Nucleosome Core Particle
pdb|3MVD|F Chain F, Crystal Structure Of The Chromatin Factor Rcc1 In
Complex With The Nucleosome Core Particle
pdb|3LZ0|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|B Chain B, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|F Chain F, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|B Chain B, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|F Chain F, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|B Chain B, Crystal Structure Of The Sir3 Bah Domain In Complex With
A Nucleosome Core Particle.
pdb|3TU4|F Chain F, Crystal Structure Of The Sir3 Bah Domain In Complex With
A Nucleosome Core Particle.
pdb|3REH|B Chain B, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|F Chain F, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|B Chain B, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|F Chain F, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|B Chain B, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|F Chain F, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|B Chain B, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|F Chain F, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|B Chain B, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|F Chain F, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|4H9N|B Chain B, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9O|B Chain B, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
pdb|4H9P|B Chain B, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9Q|B Chain B, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
pdb|4H9R|B Chain B, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 102
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
>pdb|2PYO|B Chain B, Drosophila Nucleosome Core
pdb|2PYO|F Chain F, Drosophila Nucleosome Core
Length = 102
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
>pdb|1P3F|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKCISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
>pdb|1HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 76
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 8 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 64
>pdb|2NQB|B Chain B, Drosophila Nucleosome Structure
pdb|2NQB|F Chain F, Drosophila Nucleosome Structure
Length = 103
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 35 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91
>pdb|2YFV|B Chain B, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 74
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG + F+E + + + T T KR+T+ DV A+
Sbjct: 11 IRRLARRGG--VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 67
>pdb|2HUE|C Chain C, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones
H3 And H4
pdb|3NQJ|B Chain B, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 84
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 16 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 72
>pdb|3AZM|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
Length = 106
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 38 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRQTVTAMDVVYAL 94
>pdb|1EQZ|D Chain D, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|H Chain H, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1F66|B Chain B, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|F Chain F, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1HQ3|D Chain D, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|H Chain H, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|D Chain D, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|H Chain H, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2CV5|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
pdb|2ARO|D Chain D, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|H Chain H, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|1U35|B Chain B, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|F Chain F, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|B Chain B, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|F Chain F, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|3NQU|B Chain B, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
pdb|3R45|B Chain B, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
pdb|4HGA|C Chain C, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 103
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 35 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91
>pdb|3KWQ|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|4H9S|C Chain C, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|D Chain D, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 83
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 15 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 71
>pdb|2HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein
Length = 103
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 35 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91
>pdb|1AOI|B Chain B, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|F Chain F, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 87
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 19 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 75
>pdb|4EO5|C Chain C, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 83
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 15 IRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 71
>pdb|1P3G|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G VK ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--VKEISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
>pdb|1P3P|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 IKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAV 86
I+++ ++ G +K ISG ++F+E + + + T T KR+T+ DV A+
Sbjct: 34 IRRLARRGG--IKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,611,757
Number of Sequences: 62578
Number of extensions: 85345
Number of successful extensions: 256
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 41
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)