BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047870
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
HSLPLARIKKIMK + +DV+MIS EAP+VF++ACE+FI ELT RSW T + KRRTL K
Sbjct: 68 NHSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQK 126
Query: 80 DDVASAVIATDIFDFLLTLVS 100
+D+A+AV TDIFDFL+ +V
Sbjct: 127 NDIAAAVTRTDIFDFLVDIVP 147
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
HSLPLARIKKIMK + +DV+MIS EAP+VF++ACE+FI ELT RSW T + KRRTL K
Sbjct: 78 NHSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQK 136
Query: 80 DDVASAVIATDIFDFLLTLVS 100
+D+A+AV TDIFDFL+ +V
Sbjct: 137 NDIAAAVTRTDIFDFLVDIVP 157
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
H LPLARIKKIMK + +DV+MIS EAPI+F+KACELFI ELT RSW + KRRTL K
Sbjct: 76 NHQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQK 134
Query: 80 DDVASAVIATDIFDFLLTLVS 100
+D+A+A+ TDIFDFL+ +V
Sbjct: 135 NDIAAAITRTDIFDFLVDIVP 155
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
H LPLARIKKIMK + +DV+MIS EAPI+F+KACELFI ELT RSW + KRRTL K
Sbjct: 63 NHQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQK 121
Query: 80 DDVASAVIATDIFDFLLTLVS 100
+D+A+A+ TDIFDFL+ +V
Sbjct: 122 NDIAAAITRTDIFDFLVDIVP 142
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana
GN=NFYC2 PE=2 SV=2
Length = 199
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
H+LPLARIKKIMK + +DV+MIS EAP++F+KACE+FI ELT R+W T + KRRTL K
Sbjct: 74 NHTLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQK 132
Query: 80 DDVASAVIATDIFDFLLTLVS 100
+D+A+A+ TD+FDFL+ ++
Sbjct: 133 NDIAAAISRTDVFDFLVDIIP 153
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
+HSLP ARI+K+MK + +DVKMIS EAPI+F+KACE+FI ELT R+W + + KRRTL K
Sbjct: 157 SHSLPFARIRKVMK-TDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQK 215
Query: 80 DDVASAVIATDIFDFLLTLVS 100
D+A A+ +D+FDFL+ +V
Sbjct: 216 ADIAEALQKSDMFDFLIDVVP 236
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana
GN=NFYC6 PE=2 SV=1
Length = 202
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LPLARIKKIMK + DV M+S EAPI+F+KACE+FI +LT RSW + KR TL K D+
Sbjct: 55 LPLARIKKIMK-ADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDI 113
Query: 83 ASAVIATDIFDFLLTLVS 100
++AV ++ +DFLL +V
Sbjct: 114 SNAVASSFTYDFLLDVVP 131
>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium
discoideum GN=nfyc-1 PE=3 SV=1
Length = 684
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
TH LPLARIKKIMK S DV IS EAPI+F+KACE+ I E+T RSW T KRRTL +
Sbjct: 268 THELPLARIKKIMK-SDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQR 326
Query: 80 DDVASAVIATDIFDFLLTLV 99
D+ +++ + FDFL+ ++
Sbjct: 327 TDIINSLSRCETFDFLIDML 346
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKD 80
LPLARIKKIMK +DVKMIS EAP++F+KA ++FI ELT R+W T KRRTL ++
Sbjct: 41 QELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRN 99
Query: 81 DVASAVIATDIFDFLLTLV 99
D+A A+ D FDFL+ +V
Sbjct: 100 DIAMAITKFDQFDFLIDIV 118
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKD 80
LPLARIKKIMK +DVKMIS EAP++F+KA ++FI ELT R+W T KRRTL ++
Sbjct: 41 QELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRN 99
Query: 81 DVASAVIATDIFDFLLTLV 99
D+A A+ D FDFL+ +V
Sbjct: 100 DIAMAITKFDQFDFLIDIV 118
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKD 80
LPLARIKKIMK +DVKMIS EAP++F+KA ++FI ELT R+W T KRRTL ++
Sbjct: 41 QELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRN 99
Query: 81 DVASAVIATDIFDFLLTLV 99
D+A A+ D FDFL+ +V
Sbjct: 100 DIAMAITKFDQFDFLIDIV 118
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKD 80
LPLARIKKIMK +DVKMIS EAP++F+KA ++FI ELT R+W T KRRTL ++
Sbjct: 41 QELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRN 99
Query: 81 DVASAVIATDIFDFLLTLV 99
D+A A+ D FDFL+ +V
Sbjct: 100 DIAMAITKFDQFDFLIDIV 118
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKD 80
LPLARIKKIMK +DVKMIS EAP++F+KA ++FI ELT R+W T KRRTL ++
Sbjct: 41 QELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRN 99
Query: 81 DVASAVIATDIFDFLLTLV 99
D+A A+ D FDFL+ +V
Sbjct: 100 DIAMAITKFDQFDFLIDIV 118
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 3/84 (3%)
Query: 20 THSLPLARIKKIMKKSGDDVK--MISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTL 77
T LPLARIKK+MK + DDVK MIS EAP +F+K E+FI ELT R+W + +RRTL
Sbjct: 106 TLHLPLARIKKVMK-TDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRTL 164
Query: 78 LKDDVASAVIATDIFDFLLTLVSE 101
+ D+A+AV ++++DFL+ ++S+
Sbjct: 165 QRSDIANAVSKSEMYDFLIDIISK 188
>sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana
GN=NFYC8 PE=2 SV=1
Length = 187
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
H LP+ RIKKIMK D V MI+ EAPI+ SKACE+FI +LT RSW + KR TL K
Sbjct: 34 NHDLPITRIKKIMKYDPD-VTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQK 92
Query: 80 DDVASAVIATDIFDFLL 96
+V +AV T IFDFLL
Sbjct: 93 SNVDAAVAQTVIFDFLL 109
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
H P++RIK+IMK D V MI+ EAP + SKACE+F+ +LT RSW + R T+ K
Sbjct: 34 NHEFPISRIKRIMKFDPD-VSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRK 92
Query: 80 DDVASAVIATDIFDFL 95
DV + V T IFDFL
Sbjct: 93 SDVDAVVSQTVIFDFL 108
>sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana
GN=NFYC7 PE=2 SV=1
Length = 212
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRR----- 75
H+ PL RIKKIMK S +V M++ EAP++ SKACE+ I +LT RSW T++G R+
Sbjct: 62 HAFPLTRIKKIMK-SNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRS 120
Query: 76 -TLLKDDVASAVIATDIFDFLLTLVS 100
TL + D+++A + F FL +V
Sbjct: 121 DTLTRSDISAATTRSFKFTFLGDVVP 146
>sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana
GN=NFYC10 PE=2 SV=1
Length = 195
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 7 YSGLLSKMSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSW 66
++ ++ AG LPL+R++KI+K S +VK IS + P +FSKACE FI E+T R+W
Sbjct: 52 WNNQREQLGNFAGQTHLPLSRVRKILK-SDPEVKKISCDVPALFSKACEYFILEVTLRAW 110
Query: 67 TMTMQGKRRTLLKDDVASAVIATDIFDFLLTLVS 100
T R T+ + D+ AV + +DFL+ V
Sbjct: 111 MHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVP 144
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LPLAR+K ++K + DV + EA + ++A ELF+E + K ++ QGKR+TL + D+
Sbjct: 42 LPLARVKALVK-ADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDL 100
Query: 83 ASAVIATDIFDFL 95
+A+ A D F FL
Sbjct: 101 DNAIEAVDEFAFL 113
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LPLAR+K ++K + DV + EA + ++A ELF+E + K ++ QGKR+TL + D+
Sbjct: 41 LPLARVKALVK-ADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDL 99
Query: 83 ASAVIATDIFDFL 95
+A+ A D F FL
Sbjct: 100 DNAIEAVDEFAFL 112
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LPLAR+K ++K + DV + EA + ++A ELF+E + K ++ QGKR+TL + D+
Sbjct: 40 LPLARVKALVK-ADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDL 98
Query: 83 ASAVIATDIFDFL 95
+A+ A D F FL
Sbjct: 99 DNAIEAVDEFAFL 111
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
M G LPL+R+K+I+K+ +DV S + ++ S A ELF+E+L ++ + K
Sbjct: 1 MEKTYGKTVLPLSRVKRIIKQD-EDVHYCSNASALLISVATELFVEKLATEAYQLAKLQK 59
Query: 74 RRTLLKDDVASAVIATDIFDFLLTLVS 100
R+ + DV V D F+FL L S
Sbjct: 60 RKGIRYRDVEDVVRKDDQFEFLSDLFS 86
>sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3
Length = 205
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
P ARIKKIM+ + +++ ++ P++ S+A ELF+E L K++ +T +T+ +
Sbjct: 12 FPPARIKKIMQ-TDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 83 ASAVIATDIFDFLLTLVS 100
+ FDFL LV+
Sbjct: 71 KQCIELEQQFDFLKDLVA 88
>sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1
Length = 199
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMT--MQGKRRTLLKD 80
P+ARIKKIM+ + DV ++ P++ SKA ELF++ + + S T Q KR T+
Sbjct: 24 FPVARIKKIMQ-ADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTV--S 80
Query: 81 DVASAVIATDIFDFLLTLV 99
+ AV + + FDFL +V
Sbjct: 81 HLKHAVQSVEQFDFLQDIV 99
>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1
Length = 205
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
P ARIKKIM+ + +++ ++ P++ S+A ELF+E L K++ +T +T+ +
Sbjct: 12 FPPARIKKIMQ-TDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 83 ASAVIATDIFDFLLTLVS 100
+ FDFL LV+
Sbjct: 71 KQCIELEQQFDFLKDLVA 88
>sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
Length = 205
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
P ARIKKIM+ + +++ ++ P++ S+A ELF+E L K++ +T +T+ +
Sbjct: 12 FPPARIKKIMQ-TDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 83 ASAVIATDIFDFLLTLVS 100
+ FDFL LV+
Sbjct: 71 KQCIELEQQFDFLKDLVA 88
>sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
Length = 205
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
P ARIKKIM+ + +++ ++ P++ S+A ELF+E L K++ +T +T+ +
Sbjct: 12 FPPARIKKIMQ-TDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 83 ASAVIATDIFDFLLTLVS 100
+ FDFL LV+
Sbjct: 71 KQCIELEQQFDFLKDLVA 88
>sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB3 PE=3 SV=1
Length = 114
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
P+ARIKK+M+ S DD+ ++ P +KA ELF+ L + + + + +
Sbjct: 12 FPVARIKKLMQ-SDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRNSKRVSPSHL 70
Query: 83 ASAVIATDIFDFLLTLVS 100
AV+ T+ FDFL +VS
Sbjct: 71 KQAVLETEQFDFLQDIVS 88
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens
GN=CHRAC1 PE=1 SV=1
Length = 131
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
SLPL+RI+ IMK S +V I+ EA ++ +KA ELF++ L S+ +++ L D
Sbjct: 18 SLPLSRIRVIMK-SSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSD 76
Query: 82 VASAVIATDIFDFL 95
+A+ ++ F FL
Sbjct: 77 LANTAQQSETFQFL 90
>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
GN=drap1 PE=3 SV=1
Length = 550
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
P+ARIKKIM+K ++V I+ PI+ S+ ELF+ +L ++ +T K + + + +
Sbjct: 9 FPMARIKKIMQKD-EEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHL 67
Query: 83 ASAVIATDIFDFLLTLV 99
+ FDFL +V
Sbjct: 68 KECIKQESTFDFLTEIV 84
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus
GN=Chrac1 PE=1 SV=1
Length = 129
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
SLPL+RI+ IMK S +V I+ EA ++ +KA ELF++ L S+ ++ L D
Sbjct: 18 SLPLSRIRVIMK-SSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTYSD 76
Query: 82 VASAVIATDIFDFL 95
+AS ++ FL
Sbjct: 77 LASTAEDSETLQFL 90
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSK--ACELFIEELTKRSWTMTMQGKRRTLLK 79
SLPL++IKKI K D ++ V++ A ELFI+ T++S + KR+ L
Sbjct: 91 SLPLSKIKKIFKMDPD---YLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQY 147
Query: 80 DDVASAVIATDIFDFL 95
D ++AV + D +FL
Sbjct: 148 KDFSNAVASQDSLNFL 163
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2
SV=1
Length = 145
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
M+ R +LP A I +I+K++ D IS EA S+A +F+ T + M+GK
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 74 RRTLLKDDVASAVIATDIFDFLLTL 98
R+TL DV SA+ + F+ L
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFITPL 85
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3
PE=2 SV=1
Length = 145
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
M+ R +LP A I +I+K++ D IS EA S+A +F+ T + M+GK
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 74 RRTLLKDDVASAVIATDIFDFLLTL 98
R+TL DV SA+ + F+ L
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPL 85
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2
SV=1
Length = 147
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
M+ R +LP A I +I+K++ D IS EA S+A +F+ T + M+GK
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 74 RRTLLKDDVASAVIATDIFDFLLTL 98
R+TL DV SA+ + F+ L
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPL 85
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1
SV=1
Length = 147
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
M+ R +LP A I +I+K++ D IS EA S+A +F+ T + M+GK
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 74 RRTLLKDDVASAVIATDIFDFLLTL 98
R+TL DV SA+ + F+ L
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPL 85
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
M+ R +LP A I +I+K++ D IS EA S+A +F+ T + M+GK
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 74 RRTLLKDDVASAVIATDIFDFLLTL 98
R+TL DV SA+ + F+ L
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPL 85
>sp|P40096|NCB1_YEAST Negative cofactor 2 complex subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BUR6 PE=1
SV=1
Length = 142
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 17 RAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTM-QGKRR 75
R TH P A++KKIM+ + +D+ +S P++ ++ E FI L K+S M QG +R
Sbjct: 48 RIKTH-FPPAKVKKIMQ-TDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
Query: 76 TLLKDDVASAVIATDIFDFL 95
+ + + ++ + FDFL
Sbjct: 106 -ITAEILKKTILNDEKFDFL 124
>sp|P48783|HFO2_METFO Archaeal histone A2 OS=Methanobacterium formicicum GN=hfoA2 PE=1
SV=3
Length = 68
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A + +I+K +G + IS +A +KA E EEL K++ + R+T+ +D
Sbjct: 3 ELPIAPVGRIIKNAG--AQRISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAED 60
Query: 82 VASAV 86
+ AV
Sbjct: 61 IEMAV 65
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LP+A I +IMKK+ + ++ +A FI +T + Q KR+T+ +D+
Sbjct: 53 LPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDI 112
Query: 83 ASAVIA 88
+A+++
Sbjct: 113 IAAMVS 118
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LPLA ++++++K+G +S +A + +KA E + ++ K++ + R+T+ DD
Sbjct: 7 ELPLAPVERLLRKAG--ASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDD 64
Query: 82 V 82
+
Sbjct: 65 I 65
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLK 79
T+ LP+A + +IMK + + IS EA FI +T + Q KR+T+
Sbjct: 9 TNLLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITG 68
Query: 80 DDV 82
+DV
Sbjct: 69 EDV 71
>sp|Q58655|HJA3_METJA Probable archaeal histone 3 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ1258 PE=3 SV=1
Length = 67
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A +I+KK+G + +S A F++A E E+ ++S + KR+T+ +D
Sbjct: 3 ELPVAPCVRILKKAG--AQRVSEAAGKYFAEALEEIALEIARKSVDLAKHAKRKTVKVED 60
Query: 82 VASAV 86
V +A+
Sbjct: 61 VKAAL 65
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK 73
+S R LP+A + +IMKK+ IS +A + FI +T + + K
Sbjct: 23 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEK 82
Query: 74 RRTLLKDDVASAVIATDIFDFLLTL 98
R+T+ DD+ A+ D++ L
Sbjct: 83 RKTINGDDLLWAMTTLGFEDYVEPL 107
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A + +I+K +G + IS +A +KA E EE+++++ + R+T+ D
Sbjct: 3 ELPIAPVGRIIKNAG--AQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATD 60
Query: 82 V 82
+
Sbjct: 61 I 61
>sp|P06898|H2A2_XENLA Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3
Length = 130
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 15 SGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKR 74
S RAG P+ R+ ++++K G+ + + AP+ + E E+ + +W + +
Sbjct: 19 SSRAGLQ-FPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAWERLPEITK 76
Query: 75 RTLLKDDVASAVIATDIFDFLLTLVS 100
R +L +++ + + LL V+
Sbjct: 77 RPVLSPGTCNSLCNDEELNKLLGGVT 102
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LP+A I +IMKK+ I +A + FI +T + + KR+T+ DD+
Sbjct: 26 LPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDL 85
Query: 83 ASAVIATDIFDFLLTL 98
A+ D+L L
Sbjct: 86 LWAMATLGFEDYLEPL 101
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LP+A + +IMKK+ IS +A + FI +T + + KR+T+ DD+
Sbjct: 26 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85
Query: 83 ASAVIATDIFDFLLTL 98
A+ D++ L
Sbjct: 86 LWAMTTLGFEDYVEPL 101
>sp|P48781|HMFA_METFE DNA-binding protein HMf-1 OS=Methanothermus fervidus GN=hmfA PE=1
SV=1
Length = 69
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDD 81
LP+A I +I+K +G + +S +A I +K E EE+ + + R+T+ +D
Sbjct: 3 ELPIAPIGRIIKNAG--AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60
Query: 82 V 82
+
Sbjct: 61 I 61
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 23 LPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82
LP+A I +IMKK+ I+ +A + FI +T + + KR+T+ DD+
Sbjct: 36 LPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 95
Query: 83 ASAVIATDIFDFLLTL 98
A+ D++ L
Sbjct: 96 LWAMATLGFEDYIEPL 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,388,465
Number of Sequences: 539616
Number of extensions: 1138359
Number of successful extensions: 3619
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3526
Number of HSP's gapped (non-prelim): 89
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)