Query 047870
Match_columns 102
No_of_seqs 121 out of 943
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:28:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n1j_B NF-YC; histone-like PAI 100.0 8.5E-30 2.9E-34 164.7 9.8 85 16-101 13-97 (97)
2 4g92_C HAPE; transcription fac 100.0 1.2E-29 4.2E-34 169.3 10.5 84 17-101 36-119 (119)
3 2byk_A Chrac-16; nucleosome sl 100.0 9.6E-29 3.3E-33 169.1 8.0 84 18-102 15-99 (140)
4 1jfi_A Transcription regulator 100.0 1.5E-28 5.2E-33 159.2 6.7 83 18-101 7-89 (98)
5 2byk_B Chrac-14; nucleosome sl 99.9 2.1E-25 7.3E-30 150.5 7.4 85 14-98 1-85 (128)
6 1n1j_A NF-YB; histone-like PAI 99.9 1.5E-22 5.2E-27 129.5 9.2 80 17-96 3-82 (93)
7 1jfi_B DR1 protein, transcript 99.8 9.2E-20 3.1E-24 128.7 8.8 82 16-98 9-90 (179)
8 3b0c_W CENP-W, centromere prot 99.8 2E-19 6.7E-24 111.3 7.8 69 19-88 1-69 (76)
9 1b67_A Protein (histone HMFA); 99.7 8.7E-18 3E-22 101.5 7.9 66 22-89 2-67 (68)
10 1id3_C Histone H2A.1; nucleoso 99.7 5.6E-16 1.9E-20 104.7 9.0 78 19-97 22-99 (131)
11 2nqb_C Histone H2A; nucleosome 99.6 6.4E-16 2.2E-20 103.4 8.7 77 20-97 21-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.6 8E-16 2.7E-20 103.7 8.7 77 20-97 23-99 (129)
13 2f8n_G Core histone macro-H2A. 99.6 7.6E-16 2.6E-20 102.7 8.1 77 20-97 20-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.6 1.8E-15 6E-20 101.9 8.6 77 20-97 25-102 (128)
15 2f8n_K Histone H2A type 1; nuc 99.6 2.5E-15 8.6E-20 103.4 8.6 77 20-97 42-118 (149)
16 1f1e_A Histone fold protein; a 99.5 2.8E-14 9.5E-19 98.7 8.2 72 21-93 3-74 (154)
17 1f1e_A Histone fold protein; a 99.5 4.3E-14 1.5E-18 97.7 9.1 72 16-89 76-147 (154)
18 1ku5_A HPHA, archaeal histon; 99.5 7.7E-14 2.6E-18 84.6 8.3 66 21-88 5-70 (70)
19 3b0c_T CENP-T, centromere prot 99.5 3.6E-14 1.2E-18 93.4 6.7 79 17-97 2-80 (111)
20 2jss_A Chimera of histone H2B. 99.5 9.2E-14 3.2E-18 98.9 7.6 78 19-97 102-180 (192)
21 1tzy_D Histone H4-VI; histone- 99.4 1.1E-12 3.9E-17 85.0 8.5 71 19-91 26-96 (103)
22 2yfw_B Histone H4, H4; cell cy 99.4 1E-12 3.5E-17 85.3 8.2 72 18-91 25-96 (103)
23 2hue_C Histone H4; mini beta s 99.4 3.6E-12 1.2E-16 79.9 8.1 70 20-91 8-77 (84)
24 1id3_B Histone H4; nucleosome 99.3 4.7E-12 1.6E-16 82.1 8.4 72 18-91 24-95 (102)
25 1taf_B TFIID TBP associated fa 99.1 1.2E-09 4E-14 66.5 8.6 67 19-87 3-69 (70)
26 2hue_B Histone H3; mini beta s 98.8 3.4E-08 1.2E-12 60.9 7.3 68 21-88 2-72 (77)
27 3v9r_A MHF1, uncharacterized p 98.7 4.9E-08 1.7E-12 61.8 6.7 65 28-92 18-83 (90)
28 3nqj_A Histone H3-like centrom 98.7 5.1E-08 1.8E-12 60.8 6.1 67 21-87 2-73 (82)
29 2yfv_A Histone H3-like centrom 98.6 1E-07 3.5E-12 61.5 7.1 71 17-87 22-98 (100)
30 4dra_A Centromere protein S; D 98.6 5E-08 1.7E-12 64.1 4.7 72 27-98 32-105 (113)
31 3r45_A Histone H3-like centrom 98.6 1.5E-07 5.1E-12 64.9 6.8 71 17-87 72-147 (156)
32 3b0b_B CENP-S, centromere prot 98.5 8.9E-08 3E-12 62.4 4.7 71 27-97 24-96 (107)
33 3nqu_A Histone H3-like centrom 98.5 1.8E-07 6.1E-12 63.5 5.9 71 17-87 56-131 (140)
34 1tzy_C Histone H3; histone-fol 98.4 8E-07 2.7E-11 60.1 7.7 71 17-87 57-130 (136)
35 1taf_A TFIID TBP associated fa 98.4 1.2E-06 4.1E-11 52.7 7.7 61 26-88 5-65 (68)
36 2ly8_A Budding yeast chaperone 98.4 9.1E-07 3.1E-11 58.7 7.1 54 38-91 61-114 (121)
37 3vh5_A CENP-S; histone fold, c 98.4 3.8E-07 1.3E-11 61.8 5.2 71 28-98 25-97 (140)
38 4dra_E Centromere protein X; D 98.3 3.8E-06 1.3E-10 52.5 8.4 76 13-88 3-79 (84)
39 3ksy_A SOS-1, SON of sevenless 98.1 4.9E-06 1.7E-10 70.9 7.5 76 19-96 101-176 (1049)
40 2nqb_D Histone H2B; nucleosome 98.1 1.1E-05 3.9E-10 53.5 7.5 62 26-88 37-98 (123)
41 1tzy_B Histone H2B; histone-fo 98.1 1.5E-05 5E-10 53.1 7.5 62 26-88 40-101 (126)
42 3b0b_C CENP-X, centromere prot 98.1 3.3E-05 1.1E-09 47.9 8.4 70 19-88 5-75 (81)
43 1bh9_B TAFII28; histone fold, 98.1 1.6E-05 5.6E-10 50.0 7.0 68 20-89 14-82 (89)
44 1h3o_B Transcription initiatio 98.0 5.5E-05 1.9E-09 46.3 8.2 68 21-89 4-71 (76)
45 2l5a_A Histone H3-like centrom 98.0 1.6E-05 5.4E-10 57.9 6.5 59 30-90 169-227 (235)
46 2jss_A Chimera of histone H2B. 97.9 5.2E-05 1.8E-09 53.6 7.4 61 26-87 7-67 (192)
47 2l5a_A Histone H3-like centrom 97.4 0.00042 1.4E-08 50.5 6.6 67 22-88 14-83 (235)
48 3v9r_B MHF2, uncharacterized p 96.5 0.019 6.4E-07 35.9 7.4 64 23-86 2-73 (88)
49 2ly8_A Budding yeast chaperone 91.2 0.43 1.5E-05 31.3 5.1 57 22-78 4-66 (121)
50 3kw6_A 26S protease regulatory 90.1 0.52 1.8E-05 27.5 4.4 43 46-88 26-72 (78)
51 1wwi_A Hypothetical protein TT 89.3 1 3.5E-05 30.4 5.8 59 22-82 2-60 (148)
52 2dzn_B 26S protease regulatory 87.8 1 3.6E-05 26.5 4.6 32 58-89 37-68 (82)
53 2krk_A 26S protease regulatory 86.3 1.3 4.3E-05 26.7 4.4 42 47-88 35-80 (86)
54 3aji_B S6C, proteasome (prosom 85.1 1.1 3.7E-05 26.3 3.6 42 48-89 26-71 (83)
55 3vlf_B 26S protease regulatory 84.2 1.2 4E-05 26.8 3.5 42 47-88 25-70 (88)
56 3uk6_A RUVB-like 2; hexameric 82.2 6 0.00021 28.5 7.4 66 23-88 259-329 (368)
57 3k1j_A LON protease, ATP-depen 81.0 6.4 0.00022 31.2 7.6 50 40-89 313-375 (604)
58 2v1u_A Cell division control p 80.5 7 0.00024 27.9 7.2 65 25-89 203-276 (387)
59 1r4v_A Hypothetical protein AQ 80.3 1.5 5.3E-05 30.2 3.3 59 22-82 26-84 (171)
60 1g8p_A Magnesium-chelatase 38 74.8 14 0.00048 26.1 7.4 48 41-88 267-321 (350)
61 1h3o_A Transcription initiatio 74.2 7 0.00024 23.4 4.6 44 26-71 10-53 (75)
62 2qby_A CDC6 homolog 1, cell di 71.1 20 0.00067 25.4 7.4 69 22-90 196-273 (386)
63 3h4m_A Proteasome-activating n 69.3 6 0.0002 27.5 4.2 42 47-88 212-257 (285)
64 2c9o_A RUVB-like 1; hexameric 67.8 15 0.0005 27.9 6.4 66 23-88 366-436 (456)
65 1lv7_A FTSH; alpha/beta domain 66.6 7.4 0.00025 26.7 4.2 47 42-88 200-251 (257)
66 4b4t_I 26S protease regulatory 64.7 7.5 0.00026 30.4 4.2 48 41-88 370-422 (437)
67 1khy_A CLPB protein; alpha hel 63.6 13 0.00043 23.5 4.6 31 60-90 12-42 (148)
68 4b4t_J 26S protease regulatory 63.0 8.5 0.00029 29.7 4.2 42 47-88 343-388 (405)
69 4b4t_L 26S protease subunit RP 62.0 8.8 0.0003 29.7 4.2 42 47-88 376-421 (437)
70 3fes_A ATP-dependent CLP endop 61.1 12 0.0004 23.9 4.1 31 60-90 14-44 (145)
71 1fnn_A CDC6P, cell division co 60.6 26 0.0009 24.9 6.3 68 23-90 193-275 (389)
72 4b4t_M 26S protease regulatory 60.5 8.3 0.00028 29.9 3.8 43 47-89 376-422 (434)
73 3fes_A ATP-dependent CLP endop 59.4 12 0.00039 24.0 3.8 32 59-90 87-118 (145)
74 1ixz_A ATP-dependent metallopr 58.8 9.1 0.00031 26.2 3.5 45 42-86 204-253 (254)
75 4b4t_H 26S protease regulatory 58.3 8.8 0.0003 30.2 3.6 42 47-88 404-449 (467)
76 2y1q_A CLPC N-domain, negative 57.9 14 0.00049 23.3 4.1 31 60-90 12-42 (150)
77 1bh9_A TAFII18; histone fold, 57.5 20 0.00068 19.1 4.9 40 27-67 5-44 (45)
78 4b4t_K 26S protease regulatory 57.5 12 0.0004 28.9 4.2 42 47-88 368-413 (428)
79 2qby_B CDC6 homolog 3, cell di 57.1 49 0.0017 23.5 7.8 66 23-90 197-271 (384)
80 3fh2_A Probable ATP-dependent 56.9 14 0.00046 23.6 3.8 31 59-89 12-42 (146)
81 3bos_A Putative DNA replicatio 56.8 27 0.00092 22.9 5.5 47 41-88 193-242 (242)
82 1iy2_A ATP-dependent metallopr 55.9 11 0.00036 26.4 3.4 46 41-86 227-277 (278)
83 3zri_A CLPB protein, CLPV; cha 55.2 12 0.0004 25.1 3.4 32 59-90 104-136 (171)
84 3fh2_A Probable ATP-dependent 54.5 16 0.00054 23.3 3.8 31 60-90 88-118 (146)
85 1k6k_A ATP-dependent CLP prote 54.0 13 0.00044 23.3 3.3 32 59-90 7-38 (143)
86 1k6k_A ATP-dependent CLP prote 52.7 23 0.00079 22.1 4.4 32 59-90 85-116 (143)
87 2y1q_A CLPC N-domain, negative 44.8 28 0.00094 21.9 3.8 33 58-90 84-116 (150)
88 3zri_A CLPB protein, CLPV; cha 44.3 31 0.001 23.0 4.1 32 59-90 30-61 (171)
89 2qz4_A Paraplegin; AAA+, SPG7, 42.5 6.3 0.00022 26.8 0.4 32 57-88 217-248 (262)
90 1khy_A CLPB protein; alpha hel 40.9 31 0.0011 21.5 3.6 33 58-90 87-119 (148)
91 1w5s_A Origin recognition comp 37.9 62 0.0021 23.2 5.3 68 22-90 214-294 (412)
92 1in4_A RUVB, holliday junction 36.1 59 0.002 23.3 4.9 65 25-89 182-250 (334)
93 2r44_A Uncharacterized protein 34.2 54 0.0018 23.1 4.3 29 60-88 268-296 (331)
94 3f8t_A Predicted ATPase involv 34.0 54 0.0018 26.1 4.6 68 21-88 392-482 (506)
95 1jr3_D DNA polymerase III, del 33.1 43 0.0015 23.9 3.7 69 27-98 150-221 (343)
96 2r62_A Cell division protease 32.1 15 0.0005 25.2 0.9 31 58-88 222-252 (268)
97 1zp7_A Recombination protein U 31.6 21 0.00072 25.1 1.7 34 64-97 154-192 (206)
98 2vxz_A Pyrsv_GP04; viral prote 31.2 75 0.0026 21.6 4.3 44 57-100 75-119 (165)
99 2dhr_A FTSH; AAA+ protein, hex 29.7 45 0.0016 26.0 3.5 62 26-88 204-270 (499)
100 2ce7_A Cell division protein F 29.0 62 0.0021 25.1 4.2 42 47-88 210-255 (476)
101 3f9v_A Minichromosome maintena 27.6 44 0.0015 26.5 3.2 47 41-87 521-585 (595)
102 1ygt_A Cytoplasmic dynein ligh 27.4 20 0.00069 22.2 0.9 20 16-35 3-22 (111)
103 1fpw_A Yeast frequenin, calciu 27.3 1.2E+02 0.004 18.9 5.8 70 23-92 96-179 (190)
104 3pxg_A Negative regulator of g 26.1 86 0.0029 23.8 4.4 32 59-90 85-116 (468)
105 1ofh_A ATP-dependent HSL prote 25.8 1.5E+02 0.0051 20.1 5.4 50 41-90 234-300 (310)
106 3pvs_A Replication-associated 25.7 1.2E+02 0.0042 23.0 5.3 67 23-89 165-244 (447)
107 2fco_A Recombination protein U 25.7 39 0.0013 23.6 2.2 34 64-97 154-192 (200)
108 1u5t_B Defective in vacuolar p 25.5 1.2E+02 0.0039 20.3 4.6 18 75-92 58-75 (169)
109 3pxg_A Negative regulator of g 24.6 1.1E+02 0.0036 23.3 4.7 31 60-90 12-42 (468)
110 2chg_A Replication factor C sm 24.4 1.4E+02 0.0046 18.7 5.0 63 23-87 161-224 (226)
111 2fcg_F Cationic, antibacterial 23.8 25 0.00086 16.7 0.6 10 93-102 14-23 (26)
112 2ovk_C Myosin catalytic light 23.7 1.3E+02 0.0043 18.1 6.4 70 21-90 42-115 (159)
113 1xdx_A Tctex1 light chain prot 23.5 50 0.0017 20.4 2.2 17 19-35 9-25 (114)
114 1njg_A DNA polymerase III subu 23.3 1.1E+02 0.0036 19.5 4.0 60 23-86 185-248 (250)
115 1x0l_A Homoisocitrate dehydrog 23.3 59 0.002 24.3 2.9 24 58-81 146-169 (333)
116 3flk_A Tartrate dehydrogenase/ 22.5 61 0.0021 24.6 2.9 27 58-84 168-194 (364)
117 2e0c_A 409AA long hypothetical 21.3 65 0.0022 24.8 2.9 29 58-86 199-227 (409)
118 3blx_B Isocitrate dehydrogenas 21.0 69 0.0024 24.2 2.9 24 58-81 165-188 (354)
119 3dms_A Isocitrate dehydrogenas 20.9 67 0.0023 24.9 2.9 31 57-87 215-245 (427)
120 3blx_A Isocitrate dehydrogenas 20.8 69 0.0024 24.1 2.9 24 58-81 159-182 (349)
121 2iv0_A Isocitrate dehydrogenas 20.7 69 0.0024 24.7 2.9 25 58-82 199-223 (412)
122 1ebo_A Ebola virus envelope pr 20.2 1.3E+02 0.0045 19.1 3.7 34 25-62 22-58 (131)
No 1
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=8.5e-30 Score=164.72 Aligned_cols=85 Identities=53% Similarity=0.820 Sum_probs=77.1
Q ss_pred CCCCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhh
Q 047870 16 GRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFL 95 (102)
Q Consensus 16 ~~~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL 95 (102)
.....+.||++||+|||| .++++.+||+||++++++|+|+|+++|+.+|++.|++++||||+|+||..||+++++|+||
T Consensus 13 ~~~~~~~lP~arIkrImK-~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHT-TSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHc-cCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 456788999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC
Q 047870 96 LTLVSE 101 (102)
Q Consensus 96 ~d~vp~ 101 (102)
.|+||+
T Consensus 92 ~divP~ 97 (97)
T 1n1j_B 92 IDIVPR 97 (97)
T ss_dssp TTTSCC
T ss_pred HhhCCC
Confidence 999996
No 2
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.96 E-value=1.2e-29 Score=169.34 Aligned_cols=84 Identities=52% Similarity=0.898 Sum_probs=80.4
Q ss_pred CCCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhh
Q 047870 17 RAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLL 96 (102)
Q Consensus 17 ~~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~ 96 (102)
......||++||+|||| .||++++||++|++++++|+|+|+++|+..|+..|+.++||||+|+||..||++++.|+||.
T Consensus 36 d~k~~~lPvaRIkrImK-~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMK-ADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CSSCCSSCHHHHHHHHH-TSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred ccccCCCCHHHHHHHHh-hCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 44577899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccC
Q 047870 97 TLVSE 101 (102)
Q Consensus 97 d~vp~ 101 (102)
|+||+
T Consensus 115 DiVPk 119 (119)
T 4g92_C 115 DIVPR 119 (119)
T ss_dssp TTCC-
T ss_pred HhCCC
Confidence 99996
No 3
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.95 E-value=9.6e-29 Score=169.07 Aligned_cols=84 Identities=29% Similarity=0.462 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCeecHHHHHHHHhcCCchhhhh
Q 047870 18 AGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMT-MQGKRRTLLKDDVASAVIATDIFDFLL 96 (102)
Q Consensus 18 ~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a-~~~~rktI~~~di~~av~~~~~~~FL~ 96 (102)
...+.||++||||||| .+|++++||++|++++++|+|+||++|+..|+.+| ++.+||||+|+||..||.+.+.|+||.
T Consensus 15 ~~~~~LPlaRIKrIMK-~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMK-SSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CC-SSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHh-cCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 4678999999999999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhccCC
Q 047870 97 TLVSES 102 (102)
Q Consensus 97 d~vp~~ 102 (102)
|+||++
T Consensus 94 divP~k 99 (140)
T 2byk_A 94 QIVPQK 99 (140)
T ss_dssp TTSCSC
T ss_pred ccccch
Confidence 999974
No 4
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.95 E-value=1.5e-28 Score=159.16 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 18 AGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 18 ~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
-..+.||++||+|||| .|+++.+||++|++++++++|+|+++|++.|++.|+.++||||+|+||..||+++++|+||.|
T Consensus 7 k~~~~fPvaRIkrimK-~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d 85 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQ-TDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA 85 (98)
T ss_dssp ---CCCCHHHHHHHHT-TSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred ccCCCCChHHHHHHHH-cCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence 3468999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC
Q 047870 98 LVSE 101 (102)
Q Consensus 98 ~vp~ 101 (102)
++|+
T Consensus 86 ivp~ 89 (98)
T 1jfi_A 86 RKEA 89 (98)
T ss_dssp ----
T ss_pred cCch
Confidence 9996
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.92 E-value=2.1e-25 Score=150.47 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=72.9
Q ss_pred ccCCCCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchh
Q 047870 14 MSGRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFD 93 (102)
Q Consensus 14 ~~~~~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~ 93 (102)
|+++..+..||+++|+||||+.+|++.+||+||+++|++|+|+||++|+.+|++.|++.+||||+++||..|++..++++
T Consensus 1 m~e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~ 80 (128)
T 2byk_B 1 MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFES 80 (128)
T ss_dssp ----------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTT
T ss_pred CCCccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHH
Confidence 56678899999999999999779999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q 047870 94 FLLTL 98 (102)
Q Consensus 94 FL~d~ 98 (102)
||..+
T Consensus 81 fl~~l 85 (128)
T 2byk_B 81 FVPSL 85 (128)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99764
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.88 E-value=1.5e-22 Score=129.49 Aligned_cols=80 Identities=23% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhh
Q 047870 17 RAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLL 96 (102)
Q Consensus 17 ~~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~ 96 (102)
+..+..||+++|+||||+..|++.+||+||+.++++|+|+|+.+|+.+|+..|.+.+||||+++||..|+++.++.+|+.
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~ 82 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVE 82 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHH
T ss_pred CcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhHH
Confidence 45788999999999999555888999999999999999999999999999999999999999999999999666555543
No 7
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.81 E-value=9.2e-20 Score=128.73 Aligned_cols=82 Identities=16% Similarity=0.303 Sum_probs=75.2
Q ss_pred CCCCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhh
Q 047870 16 GRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFL 95 (102)
Q Consensus 16 ~~~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL 95 (102)
....+..||++.|.||||+..| ..+||+||..+|++|+++||.+|+.+|++.|.+.+||||+++||.+|++..++.+|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 4567899999999999997778 689999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 047870 96 LTL 98 (102)
Q Consensus 96 ~d~ 98 (102)
..+
T Consensus 88 ~~l 90 (179)
T 1jfi_B 88 SEV 90 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.80 E-value=2e-19 Score=111.31 Aligned_cols=69 Identities=17% Similarity=0.346 Sum_probs=63.3
Q ss_pred CCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 19 GTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
+...||+++|+||||+..|+ .+||+||..+++.++++|+++|+.+|++.|++++||||+++||..|++.
T Consensus 1 g~~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 1 GRRTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp ---CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35689999999999988886 6899999999999999999999999999999999999999999999975
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.74 E-value=8.7e-18 Score=101.55 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=61.8
Q ss_pred CCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 22 ~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
.||.++|+|||| .. +..++|+||..++++|+|.|+.+|+.+|+.+|.+.+|+||+++||..|++..
T Consensus 2 ~lP~a~v~Ri~k-~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIK-NA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHH-HT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHh-cC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 589999999999 55 5689999999999999999999999999999999999999999999998753
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.65 E-value=5.6e-16 Score=104.71 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 19 GTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
..++||++||.|+|| .+....+|+.+|+++|+.++|+|+.++++.|.+.|+..++++|+++||..||.++++|++|..
T Consensus 22 agLqfPV~rI~R~Lk-~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 22 AGLTFPVGRVHRLLR-RGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp GTCSSCHHHHHHHHH-TTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred CCeecCHHHHHHHHH-ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 378999999999999 776777999999999999999999999999999999999999999999999999999999874
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.65 E-value=6.4e-16 Score=103.44 Aligned_cols=77 Identities=16% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 20 ~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
.++||++||.|+|| .+....+|+.+|+++|+.++|+|+.++++.|.+.|+..++++|+++||..||.++++|++|..
T Consensus 21 gL~fPV~ri~R~Lk-~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 21 GLQFPVGRIHRLLR-KGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp TCSSCHHHHHHHHH-HTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CeeccHHHHHHHHH-ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 68999999999999 766667999999999999999999999999999999999999999999999999999999874
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.64 E-value=8e-16 Score=103.70 Aligned_cols=77 Identities=14% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 20 ~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
.++||++||.|+|| .+....+|+.+|+++|+.++|+|+.++++.|.+.|+..++++|+++||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk-~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 23 GLQFPVGRVHRLLR-KGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp TCSSCHHHHHHHHH-HTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ceeccHHHHHHHHH-ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 78999999999999 766667999999999999999999999999999999999999999999999999999999874
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.64 E-value=7.6e-16 Score=102.68 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=73.0
Q ss_pred CCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 20 ~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
.++||++||.|+|| .+....+|+.+|+++++.++|+|+.++++.|.+.|+..++++|+++||..||.++++|++|..
T Consensus 20 gLqfPV~ri~R~Lk-~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 20 GVIFPVGRMLRYIK-KGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp TCSSCHHHHHHHHH-HHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CccCChHHHHHHHH-cCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 68999999999999 666567999999999999999999999999999999999999999999999999999999974
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.62 E-value=1.8e-15 Score=101.91 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred CCCCCHHHHHHHhhhcCCCc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 20 THSLPLARIKKIMKKSGDDV-KMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 20 ~~~lP~srVkrImK~~d~~~-~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
.++||++||.|+|| ..... .+|+..|+++++.++|+|+.++++.|.+.|+..++++|+++||..||.++++|++|.+
T Consensus 25 gLqfPV~ri~R~Lk-~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 25 GLQFPVGRIHRHLK-SRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp TCSSCHHHHHHHHH-HTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred CccCChHHHHHHHH-HcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 78999999999999 65543 4899999999999999999999999999999999999999999999999999999976
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.61 E-value=2.5e-15 Score=103.36 Aligned_cols=77 Identities=14% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 20 ~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
.++||++||.|+|| .+....+|+.+|+++|+.++|+|+.++++.|.+.|+..++++|+++||..||.++++|++|..
T Consensus 42 gLqFPVgrI~R~LK-~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 42 GLQFPVGRVHRLLR-KGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp TCSSCHHHHHHHHH-HTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred CeeccHHHHHHHHH-ccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 68999999999999 766667999999999999999999999999999999999999999999999999999999874
No 16
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.53 E-value=2.8e-14 Score=98.66 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchh
Q 047870 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFD 93 (102)
Q Consensus 21 ~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~ 93 (102)
..||.+.|.||||+..++ .+||+||...+..+++.|+.+++++|.+.|++.|||||+++||.+|+...++-+
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~ 74 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG 74 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccccc
Confidence 479999999999955477 899999999999999999999999999999999999999999999998765544
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.53 E-value=4.3e-14 Score=97.72 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCCCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 16 GRAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 16 ~~~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
....++.||++.|.|||| .. +..+||++|...+..++|.|+.+++++|.+.|++.|||||+++||..|++.+
T Consensus 76 ~d~~~l~lP~a~V~Ri~k-~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILK-RA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TTCCSCCCCHHHHHHHHH-HT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccccccCCccHHHHHHH-Hc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 456788999999999999 54 5679999999999999999999999999999999999999999999999863
No 18
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.51 E-value=7.7e-14 Score=84.63 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 21 ~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
..||.+.|+||+| .. ++.++|+++...+..+++.|+..++++|...|.+.|||||+++||..|++.
T Consensus 5 ~~lp~a~v~Rl~r-~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIR-KA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHH-HT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHH-Hc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 4799999999999 43 468999999999999999999999999999999999999999999999863
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.50 E-value=3.6e-14 Score=93.36 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhh
Q 047870 17 RAGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLL 96 (102)
Q Consensus 17 ~~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~ 96 (102)
.+.+..||.+.|+||+| .. .+.+||+++...+..+++.|++.++.+|...|++.|||||+.+||..|++.++++.|..
T Consensus 2 ~~~d~~lP~a~I~Ri~r-~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~ 79 (111)
T 3b0c_T 2 STREPEIASSLIKQIFS-HY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKM 79 (111)
T ss_dssp --------CHHHHHHHH-HH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTB
T ss_pred CCCCCCCCHHHHHHHHH-HC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccc
Confidence 46688999999999999 44 45899999999999999999999999999999999999999999999999999887754
Q ss_pred h
Q 047870 97 T 97 (102)
Q Consensus 97 d 97 (102)
+
T Consensus 80 ~ 80 (111)
T 3b0c_T 80 P 80 (111)
T ss_dssp C
T ss_pred c
Confidence 4
No 20
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.48 E-value=9.2e-14 Score=98.90 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=72.4
Q ss_pred CCCCCCHHHHHHHhhhcCCCc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhhh
Q 047870 19 GTHSLPLARIKKIMKKSGDDV-KMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLT 97 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~d~~~-~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~d 97 (102)
..++||++||+|+|| ..... .+|+.+|++.++.++|+++.++++.|.+.|+..++++|+++||..||.++++|++|.+
T Consensus 102 agl~fPv~ri~R~lk-~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 102 AGLQFPVGRIKRYLK-RHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp SSCCSCHHHHHHHHH-HTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred CCCcCCHHHHHHHHH-hcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 378999999999999 65443 5899999999999999999999999999999999999999999999999999999875
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.41 E-value=1.1e-12 Score=85.00 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=64.6
Q ss_pred CCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc
Q 047870 19 GTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI 91 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~ 91 (102)
...-||.+.|+||++ ... +.+||.++...+..++|+|+++++++|...|++.+||||+++||..|+++..+
T Consensus 26 ~~~gip~~~I~Rlar-~~G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 26 NIQGITKPAIRRLAR-RGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp GGGGSCHHHHHHHHH-HTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hcccCCHHHHHHHHH-HcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 344599999999999 543 47999999999999999999999999999999999999999999999998764
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.41 E-value=1e-12 Score=85.29 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=62.0
Q ss_pred CCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc
Q 047870 18 AGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI 91 (102)
Q Consensus 18 ~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~ 91 (102)
.....||.+.|+||++ .. .+.+||.++...+..++|+|+++++++|...|++.+||||+++||..|++...+
T Consensus 25 ~~~~gip~~~I~Rlar-~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 25 DNIQGITKPAIRRLAR-RG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----CCHHHHHHHHH-HT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhccCCHHHHHHHHH-Hc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3344599999999999 54 347999999999999999999999999999999999999999999999997654
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.36 E-value=3.6e-12 Score=79.89 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc
Q 047870 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI 91 (102)
Q Consensus 20 ~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~ 91 (102)
...+|.+.|+||++ .. .+.+||.++...+..+++.|++.++.+|...|++.+||||+.+||..|++...+
T Consensus 8 ~~~ip~~~I~Riar-~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 8 IQGITKPAIRRLAR-RG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CCSSCHHHHHHHHH-HT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCCHHHHHHHHH-Hc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 45699999999999 54 357999999999999999999999999999999999999999999999997653
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.35 E-value=4.7e-12 Score=82.12 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=65.2
Q ss_pred CCCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc
Q 047870 18 AGTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI 91 (102)
Q Consensus 18 ~~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~ 91 (102)
.....||.+.|+||++ .. .+.+||.++...+..++|.|++.++.+|...|++.+||||+.+||..|++...+
T Consensus 24 ~~i~~ip~~~I~Rlar-~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 24 DNIQGITKPAIRRLAR-RG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp CCGGGSCHHHHHHHHH-HT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHH-Hc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3455699999999999 54 357999999999999999999999999999999999999999999999997653
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.07 E-value=1.2e-09 Score=66.46 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=61.3
Q ss_pred CCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 19 GTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
....||.+.|++|.+ +- ++.++|.|+...|+..+|+-+.+++++|...+++.||+|++.+||..|++
T Consensus 3 ~~s~lp~~~v~~iae-s~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 3 YGSSISAESMKVIAE-SI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CSCCCCHHHHHHHHH-HT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccccCCHHHHHHHHH-HC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 356899999999999 43 24689999999999999999999999999999999999999999999975
No 26
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.76 E-value=3.4e-08 Score=60.95 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHhhhcCC---CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 21 HSLPLARIKKIMKKSGD---DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 21 ~~lP~srVkrImK~~d~---~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
+.+|.....|++++... ..-+++.+|..++..|+|.|+-.|.+.++.+|.+.||+||+++||.-|..-
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 46788888887774422 235899999999999999999999999999999999999999999988754
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=4.9e-08 Score=61.84 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=57.3
Q ss_pred HHHHhhhcCCCc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCch
Q 047870 28 IKKIMKKSGDDV-KMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIF 92 (102)
Q Consensus 28 VkrImK~~d~~~-~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~ 92 (102)
|-+|.++..+.. ..+|+++..+|+..++.++..++..+...|++.|||||+.+||.-++++++.+
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 556776554433 67999999999999999999999999999999999999999999999998864
No 28
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.67 E-value=5.1e-08 Score=60.80 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHhhhcCCC-----cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 21 HSLPLARIKKIMKKSGDD-----VKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 21 ~~lP~srVkrImK~~d~~-----~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
+.+|.....|++|+...+ .-+++.+|..++..|+|.|+-.|.+.|+.+|.+.||+||.++||.-|..
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 457888888888855422 3489999999999999999999999999999999999999999988764
No 29
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.64 E-value=1e-07 Score=61.46 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHhhhcCCC------cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 17 RAGTHSLPLARIKKIMKKSGDD------VKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 17 ~~~~~~lP~srVkrImK~~d~~------~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
...++.+|.....|++++...+ .-+++.+|..+|..|+|.|+-.|.+.|+.+|.+.||.||.++||.-|..
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 4567889999999988865532 3589999999999999999999999999999999999999999987753
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.60 E-value=5e-08 Score=64.11 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=60.6
Q ss_pred HHHHHhhhcCCC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc-hhhhhhh
Q 047870 27 RIKKIMKKSGDD-VKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI-FDFLLTL 98 (102)
Q Consensus 27 rVkrImK~~d~~-~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~-~~FL~d~ 98 (102)
.|.||+++...+ ...+|+++..+|+..++.|+..+++.+...|+..|||||+.+||.-++++++. .++|.+.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHHH
Confidence 366788844332 24699999999999999999999999999999999999999999999999876 4555543
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.57 E-value=1.5e-07 Score=64.85 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=60.9
Q ss_pred CCCCCCCCHHHHHHHhhhcCCC-----cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 17 RAGTHSLPLARIKKIMKKSGDD-----VKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 17 ~~~~~~lP~srVkrImK~~d~~-----~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
+..++.+|.....|++++...+ .-+++.+|..+|..|+|.|+-.|.+.|+.+|...+|.||+++||.-|..
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 4567889999999999865533 2489999999999999999999999999999999999999999988764
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.54 E-value=8.9e-08 Score=62.41 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=59.6
Q ss_pred HHHHHhhhcCCC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc-hhhhhh
Q 047870 27 RIKKIMKKSGDD-VKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI-FDFLLT 97 (102)
Q Consensus 27 rVkrImK~~d~~-~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~-~~FL~d 97 (102)
.|.||+++...+ ..++|++++..|+..++.|+..++..+...|++.|||||+.+||.-++++++. ++.|.+
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~ 96 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHH
Confidence 377788744321 24799999999999999999999999999999999999999999999999875 444444
No 33
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.52 E-value=1.8e-07 Score=63.53 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCCCCCCCHHHHHHHhhhcCCC-----cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 17 RAGTHSLPLARIKKIMKKSGDD-----VKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 17 ~~~~~~lP~srVkrImK~~d~~-----~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
...++.+|.....|++++...+ .-+++.+|..+|..|+|.|+-.|.+.|+.+|.+.+|.||+++||.-|..
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 4567788888888888855422 2489999999999999999999999999999999999999999988764
No 34
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.45 E-value=8e-07 Score=60.08 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=61.8
Q ss_pred CCCCCCCCHHHHHHHhhhcCC---CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 17 RAGTHSLPLARIKKIMKKSGD---DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 17 ~~~~~~lP~srVkrImK~~d~---~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
...++.+|.....|++++... ..-+++.+|..+|..|+|.|+-.|.+.++.+|.+.+|.||.++||.-|..
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 456788999999998885521 12589999999999999999999999999999999999999999998864
No 35
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.44 E-value=1.2e-06 Score=52.75 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=55.3
Q ss_pred HHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 26 ARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 26 srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
-.|.+|+|+. ++..++..++..|...++.++..++++|...|++.||+||+.+||.-|++.
T Consensus 5 ~~i~~iLk~~--G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL--NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT--TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3578999943 346899999999999999999999999999999999999999999999975
No 36
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=9.1e-07 Score=58.75 Aligned_cols=54 Identities=28% Similarity=0.223 Sum_probs=50.6
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc
Q 047870 38 DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI 91 (102)
Q Consensus 38 ~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~ 91 (102)
++.+||.++...+..+++.|++.++.+|...+++.+||||+.+||..|++..+.
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 567999999999999999999999999999999999999999999999987664
No 37
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.40 E-value=3.8e-07 Score=61.82 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHHHhhhcCC-CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc-hhhhhhh
Q 047870 28 IKKIMKKSGD-DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI-FDFLLTL 98 (102)
Q Consensus 28 VkrImK~~d~-~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~-~~FL~d~ 98 (102)
|-+|+++... ....+|.++..+|+..++.|+..++..+...|++.||+||+.+||.-++++++. +.+|.+.
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~ 97 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHH
Confidence 5567773322 235799999999999999999999999999999999999999999999999875 4555544
No 38
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.34 E-value=3.8e-06 Score=52.48 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=61.1
Q ss_pred cccCCCCCCCCCHHHHHHHhhhcCC-CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 13 KMSGRAGTHSLPLARIKKIMKKSGD-DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 13 ~~~~~~~~~~lP~srVkrImK~~d~-~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
-|++.-.+..||..-|.||++..-. +-.+||++|..++++-+++|+.+-+.+|...|+..+...|..+|+.+.+-+
T Consensus 3 ~~~~~~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 3 HMEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp --------CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 3566667889999999999994432 567999999999999999999999999999999999999999999987643
No 39
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=98.14 E-value=4.9e-06 Score=70.88 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCchhhhh
Q 047870 19 GTHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLL 96 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~~~FL~ 96 (102)
..+.||++||.|.+| .... .+|+..|++.++..+|+...++++-|.+.|+..+++.|+++||..|+.+++.++-|.
T Consensus 101 ~~l~~pv~~~~~~l~-~~~~-~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~ 176 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLK-EVLG-YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 176 (1049)
T ss_dssp SSCSSCHHHHHHHHH-HHHC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHC
T ss_pred CCccccHHHHHHHhh-cccc-cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHHH
Confidence 368999999999997 4332 489999999999999999999999999999999999999999999999999876553
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.13 E-value=1.1e-05 Score=53.51 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=56.5
Q ss_pred HHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 26 ARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 26 srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.-|.|++|+..|| ..||.+|..+|.--..-+.+.|+.+|...+..++|+||+.+||..|+.-
T Consensus 37 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 37 IYIYTVLKQVHPD-TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 5688889988898 4699999999999999999999999999999999999999999999863
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.09 E-value=1.5e-05 Score=53.15 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=56.6
Q ss_pred HHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 26 ARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 26 srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.-|.|++|+..|| ..||.+|..+|.--..-+.+.|+.+|...+..++|+||+.+||..|+.-
T Consensus 40 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 40 IYVYKVLKQVHPD-TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3688999988898 4599999999999999999999999999999999999999999999863
No 42
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=98.07 E-value=3.3e-05 Score=47.87 Aligned_cols=70 Identities=9% Similarity=0.172 Sum_probs=60.9
Q ss_pred CCCCCCHHHHHHHhhhcCC-CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 19 GTHSLPLARIKKIMKKSGD-DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~d~-~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.+..||..-|.||++..-. +..+|+++|..++++-++.|+.+-+.+|...++..+...|..+|+.+.+-+
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 3678999999999994433 457999999999999999999999999999999999999999999987643
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=98.06 E-value=1.6e-05 Score=50.04 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCeecHHHHHHHHhcC
Q 047870 20 THSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK-RRTLLKDDVASAVIAT 89 (102)
Q Consensus 20 ~~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~-rktI~~~di~~av~~~ 89 (102)
...||.+.|||+|+ .--+ ..++.+...+++-.+-+|+.+|+++|.++..+.+ ..-|+|.||..|....
T Consensus 14 rs~f~k~~vKrl~~-~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 14 RSAFPKAAIKRLIQ-SITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HCCCCHHHHHHHHH-HHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHH-HHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 45799999999999 4333 5799999999999999999999999999988765 5599999999998653
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.99 E-value=5.5e-05 Score=46.35 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 21 ~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
-.|+..++..++++.||. ..+..++-.++...+..|+..++..|...|++.+..||..+||.-.+++.
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 357899999999988886 67999999999999999999999999999999999999999999888753
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.6e-05 Score=57.93 Aligned_cols=59 Identities=27% Similarity=0.212 Sum_probs=52.7
Q ss_pred HHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 30 KIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 30 rImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
||++ . ..+.+||.++...+..+++.|++.++.+|...|.+.+||||+..||..|++...
T Consensus 169 RlaR-r-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGD-K-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSC-C-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhh-c-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5555 2 246799999999999999999999999999999999999999999999998643
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.86 E-value=5.2e-05 Score=53.56 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=56.6
Q ss_pred HHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 26 ARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 26 srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
.-|.|++|+..|+ ..+|.+|...+.--+.-+...|+.+|...+..++|+|++.+||..|++
T Consensus 7 ~yi~kvLkqv~p~-~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPD-TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 4588999988888 459999999999999999999999999999999999999999999986
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00042 Score=50.45 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=55.1
Q ss_pred CCCHHH-HHHHhhhcCC--CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 22 SLPLAR-IKKIMKKSGD--DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 22 ~lP~sr-VkrImK~~d~--~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.+|-.| |+.|.++... +.-+.+++|..+|..|+|.|+-.|-+.++-+|.+.+|-||.++||.-|..-
T Consensus 14 KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 14 KIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp CCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred CccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 566666 4566662222 135899999999999999999999999999999999999999999988654
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.019 Score=35.86 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=48.9
Q ss_pred CCHHHHHHHhhhc-CCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCeecHHHHHHHH
Q 047870 23 LPLARIKKIMKKS-GDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGK-------RRTLLKDDVASAV 86 (102)
Q Consensus 23 lP~srVkrImK~~-d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~-------rktI~~~di~~av 86 (102)
+|..-|-||++.. ..+..+|+++|..++++-.+.|+.+-+.+|++.....+ ...++.+|+.+..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 7888999999833 23457999999999999999999999999988766522 2578888877653
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.43 Score=31.29 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=43.4
Q ss_pred CCCHHH-HHHHhhhcCC--CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCeec
Q 047870 22 SLPLAR-IKKIMKKSGD--DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQ---GKRRTLL 78 (102)
Q Consensus 22 ~lP~sr-VkrImK~~d~--~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~---~~rktI~ 78 (102)
.+|-.| |+.|.++..+ ..-+.+++|..++..|+|.|+-.|-+.++-+|.+ .|-+.|+
T Consensus 4 klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS 66 (121)
T 2ly8_A 4 KIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRIS 66 (121)
T ss_dssp CCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCS
T ss_pred ccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchh
Confidence 567777 4557763333 2358999999999999999999999999887765 5556666
No 50
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=90.13 E-value=0.52 Score=27.46 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 46 APIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 46 A~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
-...+++.++=| |..++.+|...|-..++..|+.+|+..|+++
T Consensus 26 dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 26 NLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 356677777766 7889999999999999999999999999975
No 51
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=89.28 E-value=1 Score=30.43 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=45.9
Q ss_pred CCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHH
Q 047870 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82 (102)
Q Consensus 22 ~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di 82 (102)
.+|.++++|+++ .-.+.. +-++-..-++.-.+.=+.+|...|.+.|+.+||..|.+.|+
T Consensus 2 vm~~~~~e~lFR-~aa~Ld-vdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFR-QAAGLD-VDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHH-HHHCCC-CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHH-HHhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 468899999999 544433 44555555666667777788889999999999999999885
No 52
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=87.78 E-value=1 Score=26.53 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
+..++.+|...|-..++..|+.+|+..|+.+.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 44567778778888899999999999999864
No 53
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=86.26 E-value=1.3 Score=26.68 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...|++.++-| +..|+.+|...|-..++..|+.+|+..|+++
T Consensus 35 l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 35 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555556555 6678888988888889999999999999875
No 54
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=85.11 E-value=1.1 Score=26.33 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 48 IVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 48 ~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
..+++.++-| +..++.+|...|-..++..|+.+|+..|+++.
T Consensus 26 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 26 EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3444444433 56788888888888999999999999999763
No 55
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=84.18 E-value=1.2 Score=26.79 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...|++.++-| +..|+.+|...|-+.++..|+.+|+..|+++
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 45666666666 7788888988888889999999999999975
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.19 E-value=6 Score=28.48 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=48.7
Q ss_pred CCHHHHHHHhhhcC-CCcccccccHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 23 LPLARIKKIMKKSG-DDVKMISGEAPIVFSKACE----LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 23 lP~srVkrImK~~d-~~~~~is~eA~~~l~ka~E----~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
++..-+..|++... .....++.++...+...+. ..+..++..|...|...+++.|+.+||..++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34555666665111 1224588899888888776 366778888888888899999999999999875
No 57
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.96 E-value=6.4 Score=31.16 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHH-------------HHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 40 KMISGEAPIVFSKAC-------------ELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 40 ~~is~eA~~~l~ka~-------------E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
..++.+|...+...+ ..-+..++..|...|...++..|+.+||..|++..
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 468888888777644 34567788899999999999999999999999753
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.55 E-value=7 Score=27.91 Aligned_cols=65 Identities=8% Similarity=0.138 Sum_probs=50.6
Q ss_pred HHHHHHHhhhcCC---CcccccccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 25 LARIKKIMKKSGD---DVKMISGEAPIVFSKACE------LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 25 ~srVkrImK~~d~---~~~~is~eA~~~l~ka~E------~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
..-+..|++.... ....++.++...+...+. ..+..++..|...|...++.+|+.+|+..++...
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 5667777662211 124688999998888887 6778889999999988899999999999998765
No 59
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=80.33 E-value=1.5 Score=30.21 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=47.5
Q ss_pred CCCHHHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHH
Q 047870 22 SLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDV 82 (102)
Q Consensus 22 ~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di 82 (102)
.+|.++++|+++ .-.+. .|-++-..-++.-.+.=+.+|...|.+.|+.+||..|.+.|+
T Consensus 26 vmg~~kferlFR-~aagL-DvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFR-TELDI-DLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHH-HHHCC-CCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHH-HHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 889999999999 54443 355666666666677777788889999999999999999885
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.82 E-value=14 Score=26.15 Aligned_cols=48 Identities=8% Similarity=-0.008 Sum_probs=38.3
Q ss_pred cccccHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 41 MISGEAPIVFSKACE-------LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 41 ~is~eA~~~l~ka~E-------~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.++.++...+...+. .=+..++..|...|...++.+|+.+||..++..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 688888888876654 345677778888888899999999999998863
No 61
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=74.21 E-value=7 Score=23.37 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047870 26 ARIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQ 71 (102)
Q Consensus 26 srVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~ 71 (102)
.||..|++ - .++..++.|...+++-|+|.=+..|.++-...|++
T Consensus 10 kri~~I~~-k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 10 RRILEIGK-K-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHHH-T-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHH-h-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 46777887 3 46778999999999999999999999887766654
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.12 E-value=20 Score=25.43 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=49.5
Q ss_pred CCCHHHHHHHhhhcCC---CcccccccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 22 SLPLARIKKIMKKSGD---DVKMISGEAPIVFSKACE------LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 22 ~lP~srVkrImK~~d~---~~~~is~eA~~~l~ka~E------~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
.++..-+..|++.... ....++.++...+...+. ..+..++..+...+...++..|+.+|+..++....
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 3445667777762111 113578888888877765 34667888898888888999999999999887654
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=69.25 E-value=6 Score=27.47 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=32.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACEL----FIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~----Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...++..++- -+..++..|...|...++..|+.+|+..|+..
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 4445444433 46778889999999999999999999999874
No 64
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.80 E-value=15 Score=27.91 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=48.3
Q ss_pred CCHHHHHHHhhhcC-CCcccccccHHHHHHHHH-H---HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 23 LPLARIKKIMKKSG-DDVKMISGEAPIVFSKAC-E---LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 23 lP~srVkrImK~~d-~~~~~is~eA~~~l~ka~-E---~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
++..-+..|++... .+...++.++..+++..+ + .-...|+..|...|..+++..|+.+||..++.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 45566666665221 122357888888887766 3 456778888988999999999999999999865
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=66.60 E-value=7.4 Score=26.72 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=33.5
Q ss_pred ccccH-HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 42 ISGEA-PIVFSKACEL----FIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 42 is~eA-~~~l~ka~E~----Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
++.++ ...++..+.- =+..++..|...|...++..|+.+|+..|+..
T Consensus 200 l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 200 LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 44333 3445444333 35677788888888889999999999999875
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.75 E-value=7.5 Score=30.36 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=36.5
Q ss_pred cccccH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 41 MISGEA-PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 41 ~is~eA-~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.++.+. ...++..++-| |..|+.+|...|-++++..|+.+|+..|+++
T Consensus 370 ~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 370 NLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 344432 45566665544 7788899999999999999999999999864
No 67
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=63.63 E-value=13 Score=23.46 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 60 ELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 60 ~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
.....|...|.+.+...|.++|+..++-+.+
T Consensus 12 ~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 12 LALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 4456778888899999999999999997655
No 68
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.97 E-value=8.5 Score=29.66 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...+++.++-| +..|+.+|...|-++++..|+.+|+..|+++
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 45566655533 6788899999998999999999999999864
No 69
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.04 E-value=8.8 Score=29.74 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...+++.++-| |..++.+|...|-+.++..|+.+|+..|+++
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44555555433 6788889988898999999999999999864
No 70
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=61.12 E-value=12 Score=23.93 Aligned_cols=31 Identities=0% Similarity=0.030 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 60 ELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 60 ~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
.....|.+.|.+.+...|.++||..++-+.+
T Consensus 14 ~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 14 KAIDLAFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 3445667778899999999999999997654
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=60.57 E-value=26 Score=24.92 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=48.9
Q ss_pred CCHHHHHHHhhhcCCC---cccccccHHHHHHHHH------------HHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 23 LPLARIKKIMKKSGDD---VKMISGEAPIVFSKAC------------ELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 23 lP~srVkrImK~~d~~---~~~is~eA~~~l~ka~------------E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
++..-+..+++..... ...++.++...+...+ =.++..++..|...+...++..|+.+|+..++.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3445666666522111 1357888888888777 256788888999999888999999999999887
Q ss_pred cCC
Q 047870 88 ATD 90 (102)
Q Consensus 88 ~~~ 90 (102)
...
T Consensus 273 ~~~ 275 (389)
T 1fnn_A 273 EVL 275 (389)
T ss_dssp HHS
T ss_pred HHh
Confidence 643
No 72
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.52 E-value=8.3 Score=29.85 Aligned_cols=43 Identities=7% Similarity=0.214 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
...+++.++-| +..++.+|...|-++++..|+.+|+..|+++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 44556655543 67888899888888999999999999999763
No 73
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=59.44 E-value=12 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 59 EELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 59 ~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
..+...|+..|++.+...|+.+|+.-|+-..+
T Consensus 87 ~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 87 KQILELSGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 35566788888999999999999999997654
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=58.85 E-value=9.1 Score=26.18 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=32.1
Q ss_pred ccccH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHH
Q 047870 42 ISGEA-PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAV 86 (102)
Q Consensus 42 is~eA-~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av 86 (102)
++.++ ...++..++=| +..++.+|...|...++..|+.+|+.+++
T Consensus 204 ~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 204 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 44443 55566555533 55677788888888888999999999875
No 75
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.29 E-value=8.8 Score=30.21 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...+++.++-| +..|+.+|...|-+.+++.|+.+|+..|+++
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45566666544 6788889998898899999999999999864
No 76
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=57.94 E-value=14 Score=23.29 Aligned_cols=31 Identities=0% Similarity=0.028 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 60 ELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 60 ~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
.....|...|.+.+...|.++|+..++-+.+
T Consensus 12 ~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 12 KVLALAQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 4455777888899999999999999997654
No 77
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=57.48 E-value=20 Score=19.08 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHH
Q 047870 27 RIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWT 67 (102)
Q Consensus 27 rVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~ 67 (102)
-|+.+|= .-.|...-..|+..++-...-.|+.+++.+|.+
T Consensus 5 ei~~mMy-~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMY-GFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHH-HTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677787 666667788899999999999999999998865
No 78
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.45 E-value=12 Score=28.90 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...++..++-| +..++.+|...|-+.++..|+.+|+..|+..
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 45666666654 7888999999999999999999999999864
No 79
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=57.15 E-value=49 Score=23.51 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=46.0
Q ss_pred CCHHHHHHHhhhc---CCCcccccccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 23 LPLARIKKIMKKS---GDDVKMISGEAPIVFSKACE------LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 23 lP~srVkrImK~~---d~~~~~is~eA~~~l~ka~E------~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
+...-+..|++.. .-....++.++...+.+.+. ..+..++..|...|. +..+|+.+|+..++....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 4556677777632 11124688888888887776 245567778887776 778999999999987653
No 80
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=56.89 E-value=14 Score=23.59 Aligned_cols=31 Identities=3% Similarity=-0.056 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 59 EELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 59 ~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
+.+...|.+.|++.+...|.++||..++-+.
T Consensus 12 ~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 12 RRVIVLAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 3455667888899999999999999998764
No 81
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=56.77 E-value=27 Score=22.85 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=30.7
Q ss_pred cccccHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 41 MISGEAPIVFSKACE---LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 41 ~is~eA~~~l~ka~E---~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.++.++...+...+. .-+..++..+...+...+ +.|+.+||..++++
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 577777777766554 234445555555554444 56999999998863
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=55.94 E-value=11 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=31.7
Q ss_pred cccccH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHH
Q 047870 41 MISGEA-PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAV 86 (102)
Q Consensus 41 ~is~eA-~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av 86 (102)
.++.++ ...++..++=| +..++.+|...|...++..|+.+|+.+|+
T Consensus 227 ~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 227 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 344443 45555554433 45677788888888888899999999876
No 83
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=55.16 E-value=12 Score=25.14 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHh-hCCCCeecHHHHHHHHhcCC
Q 047870 59 EELTKRSWTMTM-QGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 59 ~~l~~~A~~~a~-~~~rktI~~~di~~av~~~~ 90 (102)
..+.+.|+..|+ +.|...|..+||.-|+-..+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 466778999999 99999999999999997765
No 84
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=54.46 E-value=16 Score=23.28 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 60 ELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 60 ~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
.+...|+..|++.+...|+.+|+.-++-..+
T Consensus 88 ~vL~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 88 KVLELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 5556788888899999999999999997543
No 85
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=53.96 E-value=13 Score=23.33 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 59 EELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 59 ~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
+.....|.+.|.+.+...|.++|+..++-+.+
T Consensus 7 ~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 38 (143)
T 1k6k_A 7 ELSLNMAFARAREHRHEFMTVEHLLLALLSNP 38 (143)
T ss_dssp HHHHHHHHHHHHHHTBSEECHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCc
Confidence 34556788888899999999999999997654
No 86
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=52.70 E-value=23 Score=22.07 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 59 EELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 59 ~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
..+...|+..|+..+...|..+|+.-++-..+
T Consensus 85 ~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~ 116 (143)
T 1k6k_A 85 QRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQ 116 (143)
T ss_dssp HHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHhCc
Confidence 45677889999999999999999999997654
No 87
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=44.76 E-value=28 Score=21.88 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
...+...|+..|+..+...|..+|+.-++-..+
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 345667888899999999999999999997544
No 88
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=44.26 E-value=31 Score=23.02 Aligned_cols=32 Identities=0% Similarity=0.087 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 59 EELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 59 ~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
+.....|.+.|.+.+...|.++|+..++-+.+
T Consensus 30 ~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 30 KLALEQAASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HHHHHHHHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 34455788888999999999999999997754
No 89
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=42.46 E-value=6.3 Score=26.79 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 57 FIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 57 Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
-+..++..|...|...++..|+.+|+..|+++
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35677778888888888999999999999875
No 90
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=40.87 E-value=31 Score=21.54 Aligned_cols=33 Identities=3% Similarity=-0.006 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
+..+...|+..|+..+...|+.+|+.-++-..+
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~ 119 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESR 119 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCC
Confidence 445667888999988999999999999998433
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=37.86 E-value=62 Score=23.16 Aligned_cols=68 Identities=16% Similarity=0.063 Sum_probs=49.3
Q ss_pred CCCHHHHHHHhhh----cCCCcccccccHHHHHHHHHH---------HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 22 SLPLARIKKIMKK----SGDDVKMISGEAPIVFSKACE---------LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 22 ~lP~srVkrImK~----~d~~~~~is~eA~~~l~ka~E---------~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.|+..-+..+++. ...+ ..++.++...+...+. .++..++..|...+...++..|+.+|+..++..
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4556677777741 1121 2477788888877777 478888888888888888899999999988866
Q ss_pred CC
Q 047870 89 TD 90 (102)
Q Consensus 89 ~~ 90 (102)
..
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 43
No 92
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=36.14 E-value=59 Score=23.29 Aligned_cols=65 Identities=22% Similarity=0.151 Sum_probs=42.4
Q ss_pred HHHHHHHhhhcC-CCcccccccHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC
Q 047870 25 LARIKKIMKKSG-DDVKMISGEAPIVFSKACE---LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIAT 89 (102)
Q Consensus 25 ~srVkrImK~~d-~~~~~is~eA~~~l~ka~E---~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~ 89 (102)
...+..|++... .....++.++...++..+. ..+..++..+...|...++..|+.+++..++...
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 345566665221 1123467777777765432 4556777777777777788889999999998754
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=34.24 E-value=54 Score=23.13 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 60 ELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 60 ~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.+...|...|.-+++..|+++||..++..
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 45666677777889999999999998753
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=33.96 E-value=54 Score=26.12 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHhhhcC--CCcccccccHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhCCCCee
Q 047870 21 HSLPLARIKKIMKKSG--DDVKMISGEAPIVFSKACEL---------------------FIEELTKRSWTMTMQGKRRTL 77 (102)
Q Consensus 21 ~~lP~srVkrImK~~d--~~~~~is~eA~~~l~ka~E~---------------------Fi~~l~~~A~~~a~~~~rktI 77 (102)
..++...+++.+.-+. .-...++.++...+...+.. -...|...|-..|+-++|..|
T Consensus 392 ~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V 471 (506)
T 3f8t_A 392 EVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDV 471 (506)
T ss_dssp --CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCC
Confidence 4577888888776222 00246788877666543221 133467777888999999999
Q ss_pred cHHHHHHHHhc
Q 047870 78 LKDDVASAVIA 88 (102)
Q Consensus 78 ~~~di~~av~~ 88 (102)
+++|+..|+.-
T Consensus 472 ~~eDV~~Ai~L 482 (506)
T 3f8t_A 472 EPEDVDIAAEL 482 (506)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999863
No 95
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=33.10 E-value=43 Score=23.87 Aligned_cols=69 Identities=16% Similarity=0.046 Sum_probs=36.3
Q ss_pred HHHHHhhhcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcC---Cchhhhhhh
Q 047870 27 RIKKIMKKSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIAT---DIFDFLLTL 98 (102)
Q Consensus 27 rVkrImK~~d~~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~---~~~~FL~d~ 98 (102)
.|+++++ . ....++.+|..++...++-=+..+.++--..+...+.++|+.+||...+... .-|+|+..+
T Consensus 150 ~l~~~~~-~--~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai 221 (343)
T 1jr3_D 150 WVAARAK-Q--LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDAL 221 (343)
T ss_dssp HHHHHHH-H--TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHH-H--cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHH
Confidence 4445555 2 2347888888888775441111111111111111234589999999887643 345555543
No 96
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=32.06 E-value=15 Score=25.22 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
+..++..|...|...+++.|+.+|+..++..
T Consensus 222 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 222 LANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 5567777877777788899999999988765
No 97
>1zp7_A Recombination protein U; recombination,DNA-binding protein,resolvase, DNA binding protein; 2.25A {Bacillus subtilis} PDB: 1rzn_A
Probab=31.62 E-value=21 Score=25.10 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHHHhhCCCCeecHHHHHHH-----HhcCCchhhhhh
Q 047870 64 RSWTMTMQGKRRTLLKDDVASA-----VIATDIFDFLLT 97 (102)
Q Consensus 64 ~A~~~a~~~~rktI~~~di~~a-----v~~~~~~~FL~d 97 (102)
.-|+.++..|||+|.++++..- ....+.++||..
T Consensus 154 ~~w~~~~~~grKSI~~~~i~~~g~~I~~~~~~~i~YL~~ 192 (206)
T 1zp7_A 154 YFWDRKEKNGRKSIRKDELEETAYPISLGYAPRIDYISI 192 (206)
T ss_dssp HHHHGGGSSCCCEEEHHHHHHHSEECCBCSSSSBCHHHH
T ss_pred HHHHHHHhCCCCcccHHHHHhcCEEEecCCCCccChHHH
Confidence 3456566789999999999986 222456777753
No 98
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=31.17 E-value=75 Score=21.56 Aligned_cols=44 Identities=7% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCCc-hhhhhhhcc
Q 047870 57 FIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDI-FDFLLTLVS 100 (102)
Q Consensus 57 Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~~-~~FL~d~vp 100 (102)
-+.++.++-+..-...|.+-|+|.|+..-|..+.+ ..|...+||
T Consensus 75 kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~~v~ 119 (165)
T 2vxz_A 75 LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSSIIP 119 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHHhcC
Confidence 44455555566666789999999999999988765 677777766
No 99
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=29.67 E-value=45 Score=26.03 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=40.5
Q ss_pred HHHHHHhhhcCCCcccccccH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 26 ARIKKIMKKSGDDVKMISGEA-PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 26 srVkrImK~~d~~~~~is~eA-~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.--+.|++ ..-....++.++ ...++..+.=| +..++.+|...|...++..|+.+|+..++..
T Consensus 204 ~~R~~IL~-~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~ 270 (499)
T 2dhr_A 204 KGREQILR-IHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADR 270 (499)
T ss_dssp HHHHHHHH-HTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHH
T ss_pred HHHHHHHH-HHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 33455776 432223455554 55566555433 4566777777777888889999999999975
No 100
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=28.95 E-value=62 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=31.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 47 PIVFSKACELF----IEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 47 ~~~l~ka~E~F----i~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
...++..+.=| +..++.+|...|...++..|+.+|+..++..
T Consensus 210 l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~ 255 (476)
T 2ce7_A 210 LEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDR 255 (476)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 44555554444 4566778877888888999999999999875
No 101
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=27.58 E-value=44 Score=26.48 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHH------------------HHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 41 MISGEAPIVFSKACEL------------------FIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 41 ~is~eA~~~l~ka~E~------------------Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
.++.++...+...... -+..+...|...|.-.++..|+.+|+..|+.
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 5777777777665332 2456777888889999999999999999986
No 102
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=27.36 E-value=20 Score=22.21 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.4
Q ss_pred CCCCCCCCCHHHHHHHhhhc
Q 047870 16 GRAGTHSLPLARIKKIMKKS 35 (102)
Q Consensus 16 ~~~~~~~lP~srVkrImK~~ 35 (102)
.+..+..||..+|++|+++.
T Consensus 3 ~~~~~~~F~~~~v~~ii~~~ 22 (111)
T 1ygt_A 3 DSREESQFIVDDVSKTIKEA 22 (111)
T ss_dssp -----CCCCCCHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHH
Confidence 34557789999999999954
No 103
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=27.31 E-value=1.2e+02 Score=18.91 Aligned_cols=70 Identities=7% Similarity=-0.005 Sum_probs=43.5
Q ss_pred CCHHHHHHHhhhcCCC-cccccccHHHHHHHHH-------------HHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhc
Q 047870 23 LPLARIKKIMKKSGDD-VKMISGEAPIVFSKAC-------------ELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIA 88 (102)
Q Consensus 23 lP~srVkrImK~~d~~-~~~is~eA~~~l~ka~-------------E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~ 88 (102)
.+...++.+++..|.+ .+.|+.+-...+-... +......+...+...-.++...|+++++..++..
T Consensus 96 ~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 175 (190)
T 1fpw_A 96 TLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175 (190)
T ss_dssp CSTHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHS
T ss_pred CcHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHhccccCcccccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 4556777777755543 2466655443332221 0123344566677777788889999999999998
Q ss_pred CCch
Q 047870 89 TDIF 92 (102)
Q Consensus 89 ~~~~ 92 (102)
.+.+
T Consensus 176 ~~~~ 179 (190)
T 1fpw_A 176 DPSI 179 (190)
T ss_dssp STTH
T ss_pred ChHH
Confidence 7753
No 104
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.09 E-value=86 Score=23.79 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 59 EELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 59 ~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
..+...|+..|+..|...|..+||.-++-..+
T Consensus 85 ~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~ 116 (468)
T 3pxg_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (468)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHhcc
Confidence 35556788888899999999999999997665
No 105
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=25.77 E-value=1.5e+02 Score=20.10 Aligned_cols=50 Identities=12% Similarity=0.004 Sum_probs=29.9
Q ss_pred cccccHHHHHHHHHHH-----------HHHHHHHHHH-----HHHhhCCC-CeecHHHHHHHHhcCC
Q 047870 41 MISGEAPIVFSKACEL-----------FIEELTKRSW-----TMTMQGKR-RTLLKDDVASAVIATD 90 (102)
Q Consensus 41 ~is~eA~~~l~ka~E~-----------Fi~~l~~~A~-----~~a~~~~r-ktI~~~di~~av~~~~ 90 (102)
.++.++...+...+.- -+..++..+. ..+...+. .+|+.+||..++....
T Consensus 234 ~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 234 AFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp EECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred ccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 5888888888776521 1223333322 23323333 3699999999998643
No 106
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.66 E-value=1.2e+02 Score=22.97 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=41.9
Q ss_pred CCHHHHHHHhhhcCC--------CcccccccHHHHHHHHHH---HHHHHHHHHHHHHHhhC--CCCeecHHHHHHHHhcC
Q 047870 23 LPLARIKKIMKKSGD--------DVKMISGEAPIVFSKACE---LFIEELTKRSWTMTMQG--KRRTLLKDDVASAVIAT 89 (102)
Q Consensus 23 lP~srVkrImK~~d~--------~~~~is~eA~~~l~ka~E---~Fi~~l~~~A~~~a~~~--~rktI~~~di~~av~~~ 89 (102)
++..-+..|++.... ....++.++...+...+. .-+..+++.+...+... ++..|+.+||..++...
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 455556665552211 224588888888776643 22344555565555433 66899999999999875
No 107
>2fco_A Recombination protein U (penicillin-binding prote factor A); flexibility, hydrolase; 1.40A {Geobacillus kaustophilus} PDB: 1y1o_A
Probab=25.65 E-value=39 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=23.5
Q ss_pred HHHHHHhhCCCCeecHHHHHHH---Hh--cCCchhhhhh
Q 047870 64 RSWTMTMQGKRRTLLKDDVASA---VI--ATDIFDFLLT 97 (102)
Q Consensus 64 ~A~~~a~~~~rktI~~~di~~a---v~--~~~~~~FL~d 97 (102)
.-|+.++..|||+|.++++..- |. ..+.++||..
T Consensus 154 ~~w~~~~~~grKSI~~~~i~~~g~~I~~~~~~~i~YL~~ 192 (200)
T 2fco_A 154 AWWNKQEAGGRKSIPKQEIERHGHSIPLGYQPRIDYISV 192 (200)
T ss_dssp HHHHHHTTTCCSEEEHHHHHHHSEECCBCSSSSBCHHHH
T ss_pred HHHHHHHhCCCCcccHHHHHhcCEEEccCCCCccChHHH
Confidence 4456666789999999999876 22 2345677643
No 108
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=25.54 E-value=1.2e+02 Score=20.31 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=15.6
Q ss_pred CeecHHHHHHHHhcCCch
Q 047870 75 RTLLKDDVASAVIATDIF 92 (102)
Q Consensus 75 ktI~~~di~~av~~~~~~ 92 (102)
--|+++|+.+|++..+.+
T Consensus 58 ~lISp~Dl~~A~~~l~~L 75 (169)
T 1u5t_B 58 GLISPMEMREACERFEHL 75 (169)
T ss_dssp CCCCHHHHHHHHTTTGGG
T ss_pred CccCHHHHHHHHHHHHhc
Confidence 489999999999988765
No 109
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.56 E-value=1.1e+02 Score=23.28 Aligned_cols=31 Identities=0% Similarity=0.028 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 60 ELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 60 ~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
.....|...|...+...|.++|+..++-..+
T Consensus 12 ~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 12 KVLALAQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 4445677778899999999999999997654
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=24.42 E-value=1.4e+02 Score=18.74 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=33.7
Q ss_pred CCHHHHHHHhhhcCC-CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 23 LPLARIKKIMKKSGD-DVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 23 lP~srVkrImK~~d~-~~~~is~eA~~~l~ka~E~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
++..-+..+++.... ....++.++...+...+.--+..+.......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 445555555552111 11247777777766655432333333222222222 6899999999886
No 111
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=23.78 E-value=25 Score=16.73 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=7.6
Q ss_pred hhhhhhccCC
Q 047870 93 DFLLTLVSES 102 (102)
Q Consensus 93 ~FL~d~vp~~ 102 (102)
||+..++|+|
T Consensus 14 dFf~~l~prt 23 (26)
T 2fcg_F 14 DFLRNLVPRT 23 (26)
T ss_dssp HHHHHSCCSC
T ss_pred HHHHhcCccc
Confidence 4788888875
No 112
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=23.68 E-value=1.3e+02 Score=18.13 Aligned_cols=70 Identities=4% Similarity=-0.083 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHhhhcCCCcccccccHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCCeecHHHHHHHHhcCC
Q 047870 21 HSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACE----LFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATD 90 (102)
Q Consensus 21 ~~lP~srVkrImK~~d~~~~~is~eA~~~l~ka~E----~Fi~~l~~~A~~~a~~~~rktI~~~di~~av~~~~ 90 (102)
..++...++.+++..+.+.+.|+-+-...+..... .-...-...++...-.++.-.|+.+++..++....
T Consensus 42 ~~~~~~~~~~l~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 115 (159)
T 2ovk_C 42 MNPTEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLG 115 (159)
T ss_dssp CCCCHHHHHHTTCCSSTTSCEEEHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC
Confidence 35667788888885555446666543322211100 00122245677777778888999999999987643
No 113
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=23.47 E-value=50 Score=20.45 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHhhhc
Q 047870 19 GTHSLPLARIKKIMKKS 35 (102)
Q Consensus 19 ~~~~lP~srVkrImK~~ 35 (102)
.+..||..+|++|+++.
T Consensus 9 ~~~~f~~~~v~~ii~~~ 25 (114)
T 1xdx_A 9 EEAAFVADDVSNIIKES 25 (114)
T ss_dssp TCCSCCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 56789999999999954
No 114
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=23.32 E-value=1.1e+02 Score=19.46 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=33.5
Q ss_pred CCHHHHHHHhhhcC-CCcccccccHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCCeecHHHHHHHH
Q 047870 23 LPLARIKKIMKKSG-DDVKMISGEAPIVFSKACEL---FIEELTKRSWTMTMQGKRRTLLKDDVASAV 86 (102)
Q Consensus 23 lP~srVkrImK~~d-~~~~~is~eA~~~l~ka~E~---Fi~~l~~~A~~~a~~~~rktI~~~di~~av 86 (102)
++..-+..+++..- .....++.++...+...+.= .+..++..+. ..+++.|+.+||.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~----~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI----ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH----TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH----hccCceecHHHHHHHh
Confidence 44455555554111 11235677777777666552 3344444442 2344589999998875
No 115
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=23.30 E-value=59 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHH
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDD 81 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~d 81 (102)
++.+++.|++.|++++||.|+.-|
T Consensus 146 ~eRiar~AF~~A~~r~rkkvt~v~ 169 (333)
T 1x0l_A 146 SERIGRAALRIAEGRPRKTLHIAH 169 (333)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 557788899999998887766443
No 116
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=22.50 E-value=61 Score=24.55 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHHHHH
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDDVAS 84 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~di~~ 84 (102)
++.+++.|++.|++++||.|+.-|=.+
T Consensus 168 ~eRIar~AFe~A~~r~~kkVt~v~KaN 194 (364)
T 3flk_A 168 VDRILKYAFDLAEKRERKHVTSATKSN 194 (364)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEEECTT
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECcc
Confidence 457788899999998888666444333
No 117
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=21.33 E-value=65 Score=24.77 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHHHHHHH
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDDVASAV 86 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~di~~av 86 (102)
++.+++.|++.|.+++||.|+.-|=.+.+
T Consensus 199 ~eRiar~AFe~A~~r~rkkVt~v~KaNVl 227 (409)
T 2e0c_A 199 TQRITRLAIQYAIEHKRKKVTIMHKGNVM 227 (409)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECTTTS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECccch
Confidence 66888899999999888877654433333
No 118
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=20.96 E-value=69 Score=24.18 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHH
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDD 81 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~d 81 (102)
++.+++.|++.|++++||.|+.-|
T Consensus 165 ~eRiar~AFe~A~~r~rkkVt~v~ 188 (354)
T 3blx_B 165 SERVIRYAFEYARAIGRPRVIVVH 188 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 457778899999998787766433
No 119
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=20.94 E-value=67 Score=24.85 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhCCCCeecHHHHHHHHh
Q 047870 57 FIEELTKRSWTMTMQGKRRTLLKDDVASAVI 87 (102)
Q Consensus 57 Fi~~l~~~A~~~a~~~~rktI~~~di~~av~ 87 (102)
=++.+++.|++.|++++||.|+.-|=.++++
T Consensus 215 ~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk 245 (427)
T 3dms_A 215 GTERLVRKAIQYAIDNDRKSVTLVHKGNIMK 245 (427)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECTTTST
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEECCccch
Confidence 3568888999999998888776555444443
No 120
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=20.82 E-value=69 Score=24.13 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHH
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDD 81 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~d 81 (102)
++.+++.|++.|++++||.|+.-|
T Consensus 159 ~eRiar~AF~~A~~r~rkkVt~v~ 182 (349)
T 3blx_A 159 TERIARFAFDFAKKYNRKSVTAVH 182 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 457778899999998887665433
No 121
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=20.69 E-value=69 Score=24.67 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhCCCCeecHHHH
Q 047870 58 IEELTKRSWTMTMQGKRRTLLKDDV 82 (102)
Q Consensus 58 i~~l~~~A~~~a~~~~rktI~~~di 82 (102)
++.+++.|++.|.+++||.|+.-|=
T Consensus 199 ~eRiar~AFe~A~~r~rkkVt~v~K 223 (412)
T 2iv0_A 199 TKRLVRMAIRYAIENNRKSVTLVHK 223 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6788999999999988887765443
No 122
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=20.25 E-value=1.3e+02 Score=19.09 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=19.4
Q ss_pred HHHHHHHhhhcCCCcc---cccccHHHHHHHHHHHHHHHHH
Q 047870 25 LARIKKIMKKSGDDVK---MISGEAPIVFSKACELFIEELT 62 (102)
Q Consensus 25 ~srVkrImK~~d~~~~---~is~eA~~~l~ka~E~Fi~~l~ 62 (102)
++|++.+|++.+.=+. ++..| .++|+++|+..-+
T Consensus 22 iar~~gl~~nqn~LicgLRqLANe----TtqaLqLfLRaTT 58 (131)
T 1ebo_A 22 IARIKKLIGEADGLIEGLRQLANE----TTQALQLFLRATT 58 (131)
T ss_dssp HHHHHHHHGGGSSHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 6899999994443221 23333 3566677765444
Done!