BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047872
         (508 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TAD|A Chain A, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
 pdb|3TAD|B Chain B, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
          Length = 297

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 18/84 (21%)

Query: 286 WLDRWMATKQWENSATRASTDRRDHIMKTVETDASWPKYQNQKQPRPPVSIGIASPLHRA 345
           WL+ W+    W  +A RA+          V++ A      + +  R    IGI++PLHR 
Sbjct: 47  WLELWLGMPAWYVAACRAN----------VKSGAIMSALSDTEIQR---EIGISNPLHRL 93

Query: 346 QPNLFFHQSPALT-----PSPRKT 364
           +  L   +  +LT     P+ R T
Sbjct: 94  KLRLAIQEMVSLTSPSAPPTSRTT 117


>pdb|3TAC|B Chain B, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
          Length = 334

 Score = 28.9 bits (63), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 286 WLDRWMATKQWENSATRASTDRRDHIMKTVETDASWPKYQNQKQPRPPVSIGIASPLHRA 345
           WL+ W+    W  +A RA+          V++ A      + +  R    IGI++PLHR 
Sbjct: 47  WLELWLGMPAWYVAACRAN----------VKSGAIMSALSDTEIQR---EIGISNPLHRL 93

Query: 346 QPNLFFHQSPALT 358
           +  L   +  +LT
Sbjct: 94  KLRLAIQEMVSLT 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.125    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,705,332
Number of Sequences: 62578
Number of extensions: 441230
Number of successful extensions: 891
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 2
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)