Query 047872
Match_columns 508
No_of_seqs 283 out of 550
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.6 9.3E-16 2E-20 134.1 6.9 48 401-450 33-80 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.8 1.9E-05 4.1E-10 50.5 3.0 21 125-145 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.5 0.00019 4.1E-09 82.6 6.8 66 124-193 672-738 (862)
4 smart00015 IQ Short calmodulin 97.2 0.00027 5.9E-09 47.3 2.6 22 124-145 2-23 (26)
5 KOG0520 Uncharacterized conser 96.4 0.0024 5.2E-08 74.2 3.7 72 124-195 809-888 (975)
6 KOG0160 Myosin class V heavy c 95.8 0.024 5.2E-07 65.9 7.7 66 122-190 693-758 (862)
7 PTZ00014 myosin-A; Provisional 95.5 0.015 3.2E-07 67.6 4.9 41 126-166 778-819 (821)
8 PF00612 IQ: IQ calmodulin-bin 92.7 0.085 1.8E-06 33.6 2.0 19 148-166 2-20 (21)
9 COG5022 Myosin heavy chain [Cy 92.5 0.23 5E-06 60.3 6.5 66 124-190 744-810 (1463)
10 KOG2128 Ras GTPase-activating 92.3 0.27 5.9E-06 59.4 6.8 71 124-194 564-643 (1401)
11 KOG0164 Myosin class I heavy c 90.1 0.6 1.3E-05 53.5 6.4 58 126-194 697-755 (1001)
12 smart00015 IQ Short calmodulin 86.8 0.48 1E-05 31.6 1.9 19 148-166 4-22 (26)
13 PTZ00014 myosin-A; Provisional 85.3 1.5 3.3E-05 51.4 6.2 40 149-191 779-818 (821)
14 KOG0520 Uncharacterized conser 84.6 1 2.2E-05 53.3 4.3 65 126-190 834-931 (975)
15 KOG4427 E3 ubiquitin protein l 73.1 3.3 7.1E-05 48.1 3.6 25 121-145 26-50 (1096)
16 KOG2128 Ras GTPase-activating 71.4 6.5 0.00014 48.3 5.6 62 129-193 539-612 (1401)
17 KOG0377 Protein serine/threoni 67.7 6.3 0.00014 43.5 4.2 35 123-157 15-49 (631)
18 KOG0942 E3 ubiquitin protein l 65.1 4.7 0.0001 47.6 2.7 25 121-145 25-49 (1001)
19 KOG0163 Myosin class VI heavy 62.5 9 0.00019 44.8 4.3 35 123-157 811-846 (1259)
20 KOG0161 Myosin class II heavy 60.9 11 0.00023 48.3 5.0 45 149-193 775-819 (1930)
21 KOG0161 Myosin class II heavy 46.9 19 0.00042 46.1 4.0 41 125-165 773-817 (1930)
22 KOG0162 Myosin class I heavy c 43.4 19 0.00041 42.1 3.0 37 126-166 697-735 (1106)
23 COG5022 Myosin heavy chain [Cy 35.0 1E+02 0.0022 38.7 7.4 73 123-196 791-865 (1463)
24 PF08763 Ca_chan_IQ: Voltage g 33.9 38 0.00083 24.9 2.3 20 124-143 8-27 (35)
25 KOG0165 Microtubule-associated 32.9 57 0.0012 38.5 4.6 35 122-156 940-975 (1023)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.61 E-value=9.3e-16 Score=134.06 Aligned_cols=48 Identities=63% Similarity=0.787 Sum_probs=41.6
Q ss_pred CCCCcccchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 047872 401 TMPNYMAATESAKAKARSQSAPRQGASTSMLPRERSGSVKKRLSYPAPEP 450 (508)
Q Consensus 401 ~~PnYMA~TeSAKAK~RSqSapkqR~~tp~~er~~s~s~KKRLSfp~~~~ 450 (508)
.+|||||+|||||||+|+||+||||++++ +......++||+|||+...
T Consensus 33 ~~PsYMa~TeSakAK~RsqSaPrqR~~~~--~~~~~~~~~kR~S~~~~~~ 80 (102)
T PF13178_consen 33 SLPSYMAATESAKAKARSQSAPRQRPGTP--ERAEKQSSKKRLSLPGSSN 80 (102)
T ss_pred CCCCccchhhhhhhhhhccCCcccCCCcc--ccccccccccccccCCCCC
Confidence 39999999999999999999999999887 5554567889999997653
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.81 E-value=1.9e-05 Score=50.51 Aligned_cols=21 Identities=48% Similarity=0.805 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhhhHHHHHHH
Q 047872 125 HYAATVIQTSFRGYLARRALR 145 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~ 145 (508)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999875
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.47 E-value=0.00019 Score=82.62 Aligned_cols=66 Identities=32% Similarity=0.388 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047872 124 EHYAATVIQTSFRGYLARRALRALK-GLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHE 193 (508)
Q Consensus 124 ee~AAi~IQtafRGylARral~aLk-glVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~e 193 (508)
...+++.||..||||+.|+.|..++ +++.+|+++||.++|+. ++ ...|++.+|..+|++..|+.|.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~y~ 738 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRRYR 738 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 4567888999999999999999555 88899999999999992 22 5666667777777766666654
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.21 E-value=0.00027 Score=47.26 Aligned_cols=22 Identities=45% Similarity=0.748 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHH
Q 047872 124 EHYAATVIQTSFRGYLARRALR 145 (508)
Q Consensus 124 ee~AAi~IQtafRGylARral~ 145 (508)
.+.||++||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999984
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.40 E-value=0.0024 Score=74.24 Aligned_cols=72 Identities=32% Similarity=0.395 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHH-------HHHHHHHHHHHHHHhhhhhhcccCC
Q 047872 124 EHYAATVIQTSFRGYLARRALRALK-GLVKLQALVRGQNVRHQAKLTL-------KRVQALVRAQDMVRDQRTRFSHEGS 195 (508)
Q Consensus 124 ee~AAi~IQtafRGylARral~aLk-glVrLQalvRG~~vRrqa~~tl-------r~~qA~v~iQs~vR~~r~R~~~eg~ 195 (508)
...||..||.-||||+.|+.+..++ =+|++||-|||+.||+++.... +-+.++-++|+-+|+++.|...|..
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 4578999999999999999999655 8999999999999999997322 3455667788888888887776643
No 6
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=95.76 E-value=0.024 Score=65.86 Aligned_cols=66 Identities=26% Similarity=0.211 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047872 122 VREHYAATVIQTSFRGYLARRALRALKGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRF 190 (508)
Q Consensus 122 ~~ee~AAi~IQtafRGylARral~aLkglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~ 190 (508)
...-.+++.||+.+||+++|+........+.+|..+|+++.|+++ .....+++.+|+.+|+..+|.
T Consensus 693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 456689999999999999998222445788999999999999998 566788999999999999998
No 7
>PTZ00014 myosin-A; Provisional
Probab=95.50 E-value=0.015 Score=67.63 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHhhhchhhhhhH
Q 047872 126 YAATVIQTSFRGYLARRALRA-LKGLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 126 ~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrqa 166 (508)
..++.||+++|||++|+.|.. +.++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999884 55899999999999988763
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=92.73 E-value=0.085 Score=33.60 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhchhhhhhH
Q 047872 148 KGLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 148 kglVrLQalvRG~~vRrqa 166 (508)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4678889999999998875
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=92.46 E-value=0.23 Score=60.30 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047872 124 EHYAATVIQTSFRGYLARRALR-ALKGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRF 190 (508)
Q Consensus 124 ee~AAi~IQtafRGylARral~-aLkglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~ 190 (508)
-...|++||++|||++.||.+. +++.+..+|.+.+|-.+|+..... --..+.+.+|..++...-|.
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~r~ 810 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE-LKWRLFIKLQPLLSLLGSRK 810 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc-hHHHhHHHhhHHhHHHhhHH
Confidence 3578999999999999988887 888999999999999988665333 23455666777666655444
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=92.28 E-value=0.27 Score=59.42 Aligned_cols=71 Identities=25% Similarity=0.270 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhhhhHH---HHHHH--HHHHHHHHHHhhhchhhhhhHHHH----HHHHHHHHHHHHHHHhhhhhhcccC
Q 047872 124 EHYAATVIQTSFRGYLA---RRALR--ALKGLVKLQALVRGQNVRHQAKLT----LKRVQALVRAQDMVRDQRTRFSHEG 194 (508)
Q Consensus 124 ee~AAi~IQtafRGylA---Rral~--aLkglVrLQalvRG~~vRrqa~~t----lr~~qA~v~iQs~vR~~r~R~~~eg 194 (508)
..-..+.||.+.|||+. +..+. .++-||++|++.||+++|+.+... ..||...+.||+.+|.+..|..+..
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~ 643 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL 643 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence 56678999999999993 22222 778999999999999999998733 4699999999999999999988763
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=90.11 E-value=0.6 Score=53.54 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 047872 126 YAATVIQTSFRGYLARRALRALKG-LVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHEG 194 (508)
Q Consensus 126 ~AAi~IQtafRGylARral~aLkg-lVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~eg 194 (508)
.-|+.||.+|||+++|..|+.+|. ++.++ ..|.+.+| ..+..||.++|+.+.++.|..
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k----------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK----------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHhhhhccccCC
Confidence 457999999999999999997774 44445 45533332 235578999999988887743
No 12
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=86.81 E-value=0.48 Score=31.56 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhchhhhhhH
Q 047872 148 KGLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 148 kglVrLQalvRG~~vRrqa 166 (508)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888876
No 13
>PTZ00014 myosin-A; Provisional
Probab=85.26 E-value=1.5 Score=51.41 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=34.7
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 047872 149 GLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFS 191 (508)
Q Consensus 149 glVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~ 191 (508)
-++.||+.+||++.|+++ ++..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999998 5558899999999999988764
No 14
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=84.58 E-value=1 Score=53.29 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH-HH----------HHHHHhhhchhhhhhH----------------------HHHHHH
Q 047872 126 YAATVIQTSFRGYLARRALRALK-GL----------VKLQALVRGQNVRHQA----------------------KLTLKR 172 (508)
Q Consensus 126 ~AAi~IQtafRGylARral~aLk-gl----------VrLQalvRG~~vRrqa----------------------~~tlr~ 172 (508)
.=+|+||+++|||..|+.|+.|- ++ -++|+-.||...|.-. ..+.+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999998332 21 1237778887765432 234456
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 047872 173 VQALVRAQDMVRDQRTRF 190 (508)
Q Consensus 173 ~qA~v~iQs~vR~~r~R~ 190 (508)
-+|+++||+.+|....|-
T Consensus 914 ~~A~~~VQsm~rs~~a~q 931 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQQ 931 (975)
T ss_pred HHHHHHHHHHhcCHHHHH
Confidence 689999999999888773
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.10 E-value=3.3 Score=48.12 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHhhhhHHHHHHH
Q 047872 121 YVREHYAATVIQTSFRGYLARRALR 145 (508)
Q Consensus 121 ~~~ee~AAi~IQtafRGylARral~ 145 (508)
..+.|.||+.||..+|||++|+.+.
T Consensus 26 qrrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 26 QRRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999877
No 16
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=71.35 E-value=6.5 Score=48.28 Aligned_cols=62 Identities=29% Similarity=0.274 Sum_probs=48.9
Q ss_pred HHHHHHhhhhHHHHHHHHHH--------HHHHHHHhhhchhhhhhHH----HHHHHHHHHHHHHHHHHhhhhhhccc
Q 047872 129 TVIQTSFRGYLARRALRALK--------GLVKLQALVRGQNVRHQAK----LTLKRVQALVRAQDMVRDQRTRFSHE 193 (508)
Q Consensus 129 i~IQtafRGylARral~aLk--------glVrLQalvRG~~vRrqa~----~tlr~~qA~v~iQs~vR~~r~R~~~e 193 (508)
.+||+..|||..|-++++.. .++.+|++|||.++ ++ .......-+|.+|+..|+..+|..+.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 45599999999999988443 57889999999996 22 22334566899999999999998764
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=67.71 E-value=6.3 Score=43.46 Aligned_cols=35 Identities=34% Similarity=0.278 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 047872 123 REHYAATVIQTSFRGYLARRALRALKGLVKLQALV 157 (508)
Q Consensus 123 ~ee~AAi~IQtafRGylARral~aLkglVrLQalv 157 (508)
+--.|||.||.-||+|.||...|..-....+|+|=
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslE 49 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLE 49 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHh
Confidence 44689999999999999999988766777778764
No 18
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.10 E-value=4.7 Score=47.60 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHhhhhHHHHHHH
Q 047872 121 YVREHYAATVIQTSFRGYLARRALR 145 (508)
Q Consensus 121 ~~~ee~AAi~IQtafRGylARral~ 145 (508)
..++|.+||+||+.+|||++|+..+
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999877
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=62.47 E-value=9 Score=44.78 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhh
Q 047872 123 REHYAATVIQTSFRGYLARRALR-ALKGLVKLQALV 157 (508)
Q Consensus 123 ~ee~AAi~IQtafRGylARral~-aLkglVrLQalv 157 (508)
-...+.+++|...||||+|+.++ .+-|++++-+|.
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 35678899999999999999998 666777765544
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.93 E-value=11 Score=48.28 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047872 149 GLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHE 193 (508)
Q Consensus 149 glVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~e 193 (508)
-|+.+||.|||+++|+.+..-+..+.|+..||..+|.+...+.+.
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~ 819 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWP 819 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 467778888888888888888888888888888888886665543
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.94 E-value=19 Score=46.14 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHhhhchhhhhh
Q 047872 125 HYAATVIQTSFRGYLARRALR----ALKGLVKLQALVRGQNVRHQ 165 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~----aLkglVrLQalvRG~~vRrq 165 (508)
..-.+.+|+.+||||+|+.|. .+-+|..||.=+|-+...|.
T Consensus 773 s~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 773 SQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344688999999999999988 34488888988777765444
No 22
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=43.40 E-value=19 Score=42.12 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHhhhchhhhhhH
Q 047872 126 YAATVIQTSFRGYLARRALRALK--GLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 126 ~AAi~IQtafRGylARral~aLk--glVrLQalvRG~~vRrqa 166 (508)
-=|.+||.|||.|++||.+-.+| |.- |+-|..-||.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~----ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK----LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHH
Confidence 45899999999999999888766 222 44566566654
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=34.96 E-value=1e+02 Score=38.69 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH-HhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Q 047872 123 REHYAATVIQTSFRGYLARRALR-ALKGLVKLQ-ALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHEGSR 196 (508)
Q Consensus 123 ~ee~AAi~IQtafRGylARral~-aLkglVrLQ-alvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~eg~~ 196 (508)
....++++||..+|.+.-|+.++ .+..|..|| .+.+...++-. ..--..+.+.+.+|..+|....+..+....
T Consensus 791 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~-~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~ 865 (1463)
T COG5022 791 LKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRET-EEVEFSLKAEVLIQKFGRSLKAKKRFSLLK 865 (1463)
T ss_pred hHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 45678999999999999999999 677888999 55566555543 244556777888888888887777765543
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=33.91 E-value=38 Score=24.93 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhhhhHHHHH
Q 047872 124 EHYAATVIQTSFRGYLARRA 143 (508)
Q Consensus 124 ee~AAi~IQtafRGylARra 143 (508)
+--||..||-.||-|.+|+.
T Consensus 8 K~YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999986
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=32.92 E-value=57 Score=38.49 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHh
Q 047872 122 VREHYAATVIQTSFRGYLARRALR-ALKGLVKLQAL 156 (508)
Q Consensus 122 ~~ee~AAi~IQtafRGylARral~-aLkglVrLQal 156 (508)
+..-.||+.||.+.|||.||+.|. .+..|-.+-++
T Consensus 940 enkKkaavviqkmirgfiarrkfqmeisniRnrmiq 975 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQMEISNIRNRMIQ 975 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345689999999999999999988 44444444443
Done!