Query 047872
Match_columns 508
No_of_seqs 283 out of 550
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.0 9.1E-10 3.1E-14 85.2 6.5 53 123-176 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.6 3E-08 1E-12 73.7 5.1 41 126-166 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.6 5.6E-08 1.9E-12 112.6 8.4 72 122-194 813-885 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.6 8.6E-08 3E-12 111.1 8.7 68 125-193 768-836 (1080)
5 2l53_B CAM, voltage-gated sodi 97.9 3.4E-06 1.2E-10 58.4 2.4 24 122-145 3-26 (31)
6 1n2d_C IQ2 and IQ3 motifs from 97.9 1.5E-05 5.3E-10 58.9 5.1 44 148-192 4-47 (48)
7 2kxw_B Sodium channel protein 97.8 4.3E-06 1.5E-10 56.2 1.4 23 122-144 3-25 (27)
8 2ix7_C Myosin-5A; contractIle 97.1 0.00051 1.7E-08 52.7 4.7 43 148-193 6-48 (58)
9 1wdc_A Scallop myosin; calcium 96.7 0.0021 7.3E-08 50.3 5.3 42 150-191 9-50 (64)
10 1wdc_A Scallop myosin; calcium 96.7 0.0022 7.4E-08 50.3 5.2 42 125-166 6-51 (64)
11 2bl0_A Major plasmodial myosin 96.7 0.0019 6.6E-08 50.5 4.8 42 150-191 7-48 (63)
12 2bl0_A Major plasmodial myosin 96.7 0.0016 5.6E-08 50.9 4.3 41 126-166 5-49 (63)
13 1kk8_A Myosin heavy chain, str 96.4 0.0037 1.3E-07 71.0 6.8 42 125-166 779-824 (837)
14 3gn4_A Myosin-VI; unconvention 96.1 0.0053 1.8E-07 56.4 4.8 35 123-157 43-78 (148)
15 1i84_S Smooth muscle myosin he 94.7 0.028 9.5E-07 65.9 5.9 42 125-166 792-837 (1184)
16 1kk8_A Myosin heavy chain, str 93.3 0.1 3.5E-06 59.3 6.8 45 148-192 780-824 (837)
17 4dck_A Sodium channel protein 91.3 0.12 4.1E-06 48.3 3.5 25 122-146 127-151 (168)
18 1i84_S Smooth muscle myosin he 89.3 0.42 1.4E-05 56.0 6.5 45 148-192 793-837 (1184)
19 1w7j_A Myosin VA; motor protei 83.7 0.67 2.3E-05 52.5 3.9 24 125-148 768-791 (795)
20 4anj_A Unconventional myosin-V 79.3 1.9 6.6E-05 50.2 5.8 41 125-166 775-816 (1052)
21 3gn4_A Myosin-VI; unconvention 63.4 11 0.00036 34.6 5.6 31 148-181 46-76 (148)
22 4anj_A Unconventional myosin-V 36.1 30 0.001 40.4 5.0 45 146-193 773-817 (1052)
23 3dvk_B Voltage-dependent R-typ 24.5 28 0.00097 22.5 1.2 19 124-142 5-23 (23)
24 2f3y_B Voltage-dependent L-typ 21.9 49 0.0017 21.9 1.9 18 127-144 4-21 (26)
25 3bxl_B CAM, voltage-dependent 20.1 59 0.002 21.5 2.0 18 126-143 3-20 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.96 E-value=9.1e-10 Score=85.17 Aligned_cols=53 Identities=30% Similarity=0.439 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 047872 123 REHYAATVIQTSFRGYLARRALRALK-GLVKLQALVRGQNVRHQAKLTLKRVQAL 176 (508)
Q Consensus 123 ~ee~AAi~IQtafRGylARral~aLk-glVrLQalvRG~~vRrqa~~tlr~~qA~ 176 (508)
+.+.|||.||+.||||++|+.|..++ ++|.||+.+||+++|+.+ ..++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCc
Confidence 56789999999999999999999777 999999999999999998 445555554
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3e-08 Score=73.71 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHhhhchhhhhhH
Q 047872 126 YAATVIQTSFRGYLARRALRALK---GLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 126 ~AAi~IQtafRGylARral~aLk---glVrLQalvRG~~vRrqa 166 (508)
.|||.||+.+||||+|+.+..++ ++|.||+.+||+++|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 58999999999999999998554 788899999999988875
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.59 E-value=5.6e-08 Score=112.65 Aligned_cols=72 Identities=29% Similarity=0.378 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 047872 122 VREHYAATVIQTSFRGYLARRALRALK-GLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHEG 194 (508)
Q Consensus 122 ~~ee~AAi~IQtafRGylARral~aLk-glVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~eg 194 (508)
.+++.||++||+.||||++|+.|..++ ++|.||+.+||+++|+++. .++...+++.||+.+|++.+|+.|..
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l~R~~y~~ 885 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWLARVHYHR 885 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTHHHHHTTT
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999555 8999999999999999984 45556788888888888888777643
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.56 E-value=8.6e-08 Score=111.10 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047872 125 HYAATVIQTSFRGYLARRALRALK-GLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHE 193 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~aLk-glVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~e 193 (508)
..||++||+.||||++|+.|+.++ +++.||+.+||+++|+++ ..++...|++.||+.+|++.+|+.|.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y~ 836 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRYQ 836 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHHH
Confidence 579999999999999999999655 899999999999999998 55788999999999999999999874
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.95 E-value=3.4e-06 Score=58.41 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHHH
Q 047872 122 VREHYAATVIQTSFRGYLARRALR 145 (508)
Q Consensus 122 ~~ee~AAi~IQtafRGylARral~ 145 (508)
.+||.||+.||.|||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468999999999999999999865
No 6
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.5e-05 Score=58.92 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 047872 148 KGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSH 192 (508)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~ 192 (508)
+++|.||+.+||.++|+++ ..++...|++.||+.+||+.+|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 5789999999999999998 5566778999999999999998754
No 7
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.84 E-value=4.3e-06 Score=56.21 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHH
Q 047872 122 VREHYAATVIQTSFRGYLARRAL 144 (508)
Q Consensus 122 ~~ee~AAi~IQtafRGylARral 144 (508)
.+||.||+.||.|||+||.|+.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 46899999999999999998763
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.10 E-value=0.00051 Score=52.69 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047872 148 KGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHE 193 (508)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~e 193 (508)
..+|.||+.+||+++|+.+ ++...+++.||+.+||+.+|+.+.
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998 444579999999999999998764
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.69 E-value=0.0021 Score=50.33 Aligned_cols=42 Identities=21% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 047872 150 LVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFS 191 (508)
Q Consensus 150 lVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~ 191 (508)
++.|||.+||+++|+.+...+...+|+..||..+|++..++.
T Consensus 9 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 9 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444444444444444444445555556666665555543
No 10
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.69 E-value=0.0022 Score=50.30 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhhhchhhhhhH
Q 047872 125 HYAATVIQTSFRGYLARRALRAL----KGLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRrqa 166 (508)
...++.||+..||||+|+.|..+ .++..||.-+|+++.++.-
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 46789999999999999999954 3788899999999998765
No 11
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.66 E-value=0.0019 Score=50.51 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=24.6
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 047872 150 LVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFS 191 (508)
Q Consensus 150 lVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~ 191 (508)
++.|||.+||+++|+.+...+...+|+..||..+|++..++.
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444555555555555555555555666666666666666554
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.66 E-value=0.0016 Score=50.91 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhhhchhhhhhH
Q 047872 126 YAATVIQTSFRGYLARRALRAL----KGLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 126 ~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRrqa 166 (508)
..++.||+..||||+|+.|..+ .++..||.-+|+++.++.-
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5689999999999999999954 4787899999999998864
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.38 E-value=0.0037 Score=71.00 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhhhchhhhhhH
Q 047872 125 HYAATVIQTSFRGYLARRALRAL----KGLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRrqa 166 (508)
..+|+.||+++||||+|+.|+.+ .+++.||..+||+++||..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 45788999999999999998855 4778888888888887775
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.08 E-value=0.0053 Score=56.41 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhh
Q 047872 123 REHYAATVIQTSFRGYLARRALR-ALKGLVKLQALV 157 (508)
Q Consensus 123 ~ee~AAi~IQtafRGylARral~-aLkglVrLQalv 157 (508)
-...|+|+||+..||||+|+.++ .+.|++++.+|.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46789999999999999999999 889999998875
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.72 E-value=0.028 Score=65.85 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhhhchhhhhhH
Q 047872 125 HYAATVIQTSFRGYLARRALRAL----KGLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRrqa 166 (508)
..+|+.||+.+||||+|+.|..+ .+++.||..+||++.||..
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36789999999999999999855 4899999999999999874
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=93.30 E-value=0.1 Score=59.34 Aligned_cols=45 Identities=22% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 047872 148 KGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSH 192 (508)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~ 192 (508)
+.++.||+.+||+++|+++...+....|++.||..+|++..|+.+
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 367889999999999999977767779999999999999999865
No 17
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=91.32 E-value=0.12 Score=48.29 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHHHH
Q 047872 122 VREHYAATVIQTSFRGYLARRALRA 146 (508)
Q Consensus 122 ~~ee~AAi~IQtafRGylARral~a 146 (508)
..|+.||+.||.|||.|+.|+.++.
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 5689999999999999999988764
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.30 E-value=0.42 Score=56.01 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 047872 148 KGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSH 192 (508)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~ 192 (508)
..++.||+.+||+++|+.+...++...|++.||+.+|++..++.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 367889999999999999987777789999999999999988764
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=83.65 E-value=0.67 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH
Q 047872 125 HYAATVIQTSFRGYLARRALRALK 148 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~aLk 148 (508)
..+|+.||+++||||+|+.|+.++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999776
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=79.35 E-value=1.9 Score=50.24 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhH
Q 047872 125 HYAATVIQTSFRGYLARRALRALK-GLVKLQALVRGQNVRHQA 166 (508)
Q Consensus 125 e~AAi~IQtafRGylARral~aLk-glVrLQalvRG~~vRrqa 166 (508)
+.+|+.||. +||||+|+.|+.++ +.|.+|.+-|+...|+..
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567777775 79999999999665 788888888877666554
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=63.42 E-value=11 Score=34.63 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 047872 148 KGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQD 181 (508)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs 181 (508)
..+|++|+.|||+++|++. .-++.+++++-+
T Consensus 46 ~~~i~iQktvR~~L~rkkh---kPRi~g~~kv~~ 76 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRH---KPRIDGLVKVGT 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Confidence 4688899999999999998 344555555544
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=36.05 E-value=30 Score=40.41 Aligned_cols=45 Identities=13% Similarity=-0.023 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047872 146 ALKGLVKLQALVRGQNVRHQAKLTLKRVQALVRAQDMVRDQRTRFSHE 193 (508)
Q Consensus 146 aLkglVrLQalvRG~~vRrqa~~tlr~~qA~v~iQs~vR~~r~R~~~e 193 (508)
.+..++.+|..+||.++|+++. +-..+++.||...|.++.|....
T Consensus 773 ~~~~~~~~iq~~r~~l~r~~~~---k~~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 773 DPDHLAELVKRVNHWLICSRWK---KVQWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556677777799999999984 34456777777666666665443
No 23
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=24.54 E-value=28 Score=22.46 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhhhhHHHH...
Q 047872 124 EHYAATVIQTSFRGYLARR... 142 (508)
Q Consensus 124 ee~AAi~IQtafRGylARr... 142 (508)
+--|+..||-.||-+..|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 4568999999999987763
No 24
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=21.89 E-value=49 Score=21.90 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 047872 127 AATVIQTSFRGYLARRAL 144 (508)
Q Consensus 127 AAi~IQtafRGylARral 144 (508)
|-..||-.||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 567899999999998864
No 25
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=20.08 E-value=59 Score=21.55 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhHHHHH
Q 047872 126 YAATVIQTSFRGYLARRA 143 (508)
Q Consensus 126 ~AAi~IQtafRGylARra 143 (508)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999998875
Done!