BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047873
         (464 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/496 (62%), Positives = 376/496 (75%), Gaps = 32/496 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P F  T+ +Y +MVHFL+AH+M+ QA  LLH +VS+KG GS++S+FASILET+GT     
Sbjct: 104 PTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVFASILETKGTLSSSF 163

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V DALM VY + G++ DAIQCFRL +KH  +IP  GC+CL++RM++ + P V L FYLEI
Sbjct: 164 VFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEI 223

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD GY P+VY FNVLM++LCKEGK+KDAQ++FDE  K GL  TAVSFNTLING+CK+ NL
Sbjct: 224 LDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNL 283

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +EGFRLK VME   + PDV+TYSALI+GLCKE +L+DA  L  EMC+RGL PNDV FTTL
Sbjct: 284 EEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTL 343

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           I+G CKNGR+D+A                             G  +EARK V EM   GL
Sbjct: 344 INGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGL 403

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PDK TYT LLDG CKEGDLE AL++RKEM+K GI+LDNVAFTA+ISG CR GK+V+AER
Sbjct: 404 IPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAER 463

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            LREML+ GLKPDD TYTMV+D FCK GD K GF+LLKEM+SDGH+P V TYN LMNGLC
Sbjct: 464 TLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLC 523

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
           K GQ+KNA+MLL+ ML+LGVVPDDITYNILL+GHCKHG   DF  +++E GLVSDYA Y 
Sbjct: 524 KQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEMGLVSDYASYR 583

Query: 452 SL---VSKSSKYRQKR 464
           SL   +SK+SK RQKR
Sbjct: 584 SLLHELSKASKDRQKR 599


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/495 (63%), Positives = 365/495 (73%), Gaps = 32/495 (6%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV 61
           HFRL++H+Y TM HFL  HKM S+A+ LL  +VS+KG  S++S+F S+LE RGTH   LV
Sbjct: 98  HFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLV 157

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              LM  Y D G+  DAIQCFRL+RKH  +IP   C  L DR+M+ NL +    FY EIL
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D GY P V  FNVLMH+LCKE KI +AQ++F E GKRGL  T VSFNTLING+CK+ NLD
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +GFRLK  M  + + PDV+TYS LINGLCKE +LDDA  L  EMC+RGL PNDV FTTLI
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           +GHC  GR D+                              GD++EA+K+V EM   GL 
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT+L+DG CKEGDLESAL+IRKEM+K GIELDNVAFTALISGFCR G+V+EAER 
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           LREML+ G+KPDDATYTMVI  FCK GD KTGF+LLKEM+ DGH+P V TYN L+NGLCK
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTS 452
            GQ+KNANMLLD ML+LGVVPDDITYNILLEGHCKHGN EDFDKLQSEKGLV DY  YTS
Sbjct: 518 QGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQSEKGLVQDYGSYTS 577

Query: 453 LVS---KSSKYRQKR 464
           L+    K+ K RQKR
Sbjct: 578 LIGDLRKTCKERQKR 592


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 289/496 (58%), Positives = 357/496 (71%), Gaps = 32/496 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P FR T  +Y  M +FL AH+M  + + ++  +VS+KG  S+AS+FA+IL+T GT     
Sbjct: 95  PTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNF 154

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V DALMI Y D GF+ DAIQCFRL+R   F+IP  GC  L+D+M+ +N P     FY EI
Sbjct: 155 VFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEI 214

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L+YG+ P V  +N+L++K CKEG I+DA+++F+E  KRGL  T VSFNTLING CK++NL
Sbjct: 215 LEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNL 274

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEGFRLK  ME + + PDV+TYS LI+GLCKE RLD AE L  EM +RGL PN + FT L
Sbjct: 275 DEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTAL 334

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           IDG C++ RID A                             GD+ +ARK+VDEM   G+
Sbjct: 335 IDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGM 394

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PDKITYT L+DG+CKEGDLESA++IRK M + G+ LDNVAFTALISGFCR G+V +AER
Sbjct: 395 KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAER 454

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            LREM++ G+KPDDATYTMVID +CK G+ K GF+LLKEM+ +GH P V TYN LMNGLC
Sbjct: 455 TLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLC 514

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
           K GQ+KNANMLL+ ML+LGV PDDITYNILLEGHCK+G  ED  KL++EKGL+ DYA YT
Sbjct: 515 KQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGLIVDYAYYT 574

Query: 452 SLVS---KSSKYRQKR 464
           SLVS   KS K RQKR
Sbjct: 575 SLVSEYNKSLKDRQKR 590


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/496 (57%), Positives = 356/496 (71%), Gaps = 32/496 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P FR T  +Y  M +FL AH+M  + + ++  +VS+KG  S+AS+FA+IL+T GT     
Sbjct: 95  PTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNF 154

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V DALMI Y D GF+ DAIQCFRL+R   F+IP  GC  L+D+M+ +N P     FY EI
Sbjct: 155 VFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEI 214

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L+YG+ P V  +N+L++K CKEG I+DA+++F+E  KRGL  T VSFNTLING CK++NL
Sbjct: 215 LEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNL 274

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEGFRLK  ME + + PDV+TYS LI+GLCKE RLD AE L  EM +RGL PN + FT L
Sbjct: 275 DEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTAL 334

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           IDG  ++ R+D A                             GD+ +ARK+VDEM   G+
Sbjct: 335 IDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGM 394

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PDKITYT L+DG+CKEGDLESA++IRK M + G+ LDNVAFTALISGFCR G+V +AER
Sbjct: 395 KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAER 454

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            LREM++ G+KPDDATYTMVID +CK G+ K GF+LLKEM+ +GH P V TYN LMNGLC
Sbjct: 455 TLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLC 514

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
           K GQ+KNANMLL+ ML+LGV PDDITYNILLEGHCK+G  ED  KL++EKGL+ DYA YT
Sbjct: 515 KQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGLIVDYAYYT 574

Query: 452 SLVS---KSSKYRQKR 464
           SLVS   KS K RQKR
Sbjct: 575 SLVSEYNKSLKDRQKR 590


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 282/451 (62%), Positives = 331/451 (73%), Gaps = 29/451 (6%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV 61
           HFRL++H+Y TM HFL  HKM S+A+ LL  +VS+KG  S++S+F S+LE RGTH   LV
Sbjct: 98  HFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLV 157

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              LM  Y D G+  DAIQCFRL+RKH  +IP   C  L DR+M+ NL +    FY EIL
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D GY P V  FNVLMH+LCKE KI +AQ++F E GKRGL  T VSFNTLING+CK+ NLD
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +GFRLK  M  + + PDV+TYS LINGLCKE +LDDA  L  EMC+RGL PNDV FTTLI
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           +GHC  GR D+                              GD++EA+K+V EM   GL 
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT+L+DG CKEGDLESAL+IRKEM+K GIELDNVAFTALISGFCR G+V+EAER 
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           LREML+ G+KPDDATYTMVI  FCK GD KTGF+LLKEM+ DGH+P V TYN L+NGLCK
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            GQ+KNANMLLD ML+LGVVPDDITYNILLE
Sbjct: 518 QGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 178/367 (48%), Gaps = 27/367 (7%)

Query: 110 PTVTLGFYLEI-LDYGYSPSVYVFNVLMHKLCKEGKIKDAQ----MVFDEFGK------- 157
           P   L F+  +   + +  S++ +  + H LC    + +AQ     V    GK       
Sbjct: 83  PPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVF 142

Query: 158 ------RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
                 RG H + + F+ L+N +  +    +  +   ++    ++   ++   L + L K
Sbjct: 143 TSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMK 202

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
            N    A     E+ + G  P+   F  L+   CK  +I+      EA+ +  E+   GL
Sbjct: 203 LNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKIN------EAQLLFGEIGKRGL 256

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  +++  L++G+CK G+L+    +++ M++  +  D   ++ LI+G C+ G++ +A +
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANK 316

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EM   GL P+D T+T +I+  C  G    G  + ++M   G  P V TYN L+NGLC
Sbjct: 317 LFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLC 376

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
           K G L+ A  L+  M   G+ PD  TY +L++G CK G+ E   +++ E   +G+  D  
Sbjct: 377 KVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNV 436

Query: 449 CYTSLVS 455
            +T+L+S
Sbjct: 437 AFTALIS 443


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 286/495 (57%), Positives = 355/495 (71%), Gaps = 36/495 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-- 58
           P FR TLH+Y TM+HFL  H+M  QA  L+  +VS+KG  S+++LF+SIL T   H    
Sbjct: 113 PPFRHTLHSYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSSILRTMPRHHHHH 172

Query: 59  ---GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV--T 113
              GLV DAL+  YVD GF  DA+QCFRL+ K+ F +P RGC  L+ R++R     +  +
Sbjct: 173 HSVGLVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERS 232

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
              YLE+LD GY P +Y FNVLMH  CK G + +A++VFDE  KRGL  T VSFNTLI+G
Sbjct: 233 WALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISG 292

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK+ +++EGFRLK VME  G+ PDV+T+SALINGLCKE RLD+  LL  EMC RGL PN
Sbjct: 293 CCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPN 352

Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
            V FTTLIDG CK G++D+A                             GD+KEAR++V+
Sbjct: 353 GVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVN 412

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM  +GL PDKIT+T L+DG CK+GD+ESAL+I++ M++ GIELD+VAFTALISG CR G
Sbjct: 413 EMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREG 472

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +V +A RML +ML  G KPDD TYTMVIDCFCK GD K GF+LLKEM+SDGH+P V TYN
Sbjct: 473 RVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYN 532

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLV 444
           ALMNGLCK GQ+KNA MLLD ML++GV P+DITYNILL+GH KHG+  D D   SEKGLV
Sbjct: 533 ALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDVDIFNSEKGLV 592

Query: 445 SDYACYTSLVSKSSK 459
           +DYA YT+LV++SSK
Sbjct: 593 TDYASYTALVNESSK 607


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/485 (57%), Positives = 346/485 (71%), Gaps = 29/485 (5%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P FR T+  Y  +  FL  H+M ++A+ L+ L+VS+KG  S++S+F S++E R T + G 
Sbjct: 112 PGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGF 171

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           ++DALMI Y DLGF+ DAIQCFRL RKH F +P RGC  L+DRMM+ N      GFY+EI
Sbjct: 172 LVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEI 231

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD G+  +VYVFN+LM+K CKEG I DAQ VFDE  KR L  T VSFNTLING+CK  NL
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNL 291

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEGFRLK  ME S  RPDV+TYSALIN LCKEN++D A  L  EMC+RGL PNDVIFTTL
Sbjct: 292 DEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL 351

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           I GH +NG ID+                              GD+  AR IVD M   GL
Sbjct: 352 IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGL 411

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PDKITYT L+DGFC+ GD+E+AL+IRKEM + GIELD V F+AL+ G C+ G+V++AER
Sbjct: 412 RPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAER 471

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            LREML+ G+KPDD TYTM++D FCK GD +TGF+LLKEM+SDGH+P+V TYN L+NGLC
Sbjct: 472 ALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLC 531

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
           K GQ+KNA+MLLD ML++GVVPDDITYN LLEGH +H N       + E G+V+D A Y 
Sbjct: 532 KLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYK 591

Query: 452 SLVSK 456
           S+V++
Sbjct: 592 SIVNE 596


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/485 (57%), Positives = 346/485 (71%), Gaps = 29/485 (5%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P FR T+  Y  M  FL  H+M  +A+ L+ L+VS+KG  S++S+F S++E RGT +   
Sbjct: 112 PEFRFTVETYFVMARFLAIHEMFVEAQSLIELVVSRKGKNSASSVFISLVEMRGTPMCDF 171

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           ++DALMI Y+DLGF+ D IQCFRL RKH F +P RGC  L+DRMM+ N      GFY+EI
Sbjct: 172 LVDALMITYMDLGFIPDVIQCFRLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEI 231

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD G+  +VYVFN+LM+K CKEG I DAQ VFDE  KR L  T VSFNTLING+CK  NL
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNL 291

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D GFRLK  ME S  RPDV+TYSALIN LCKEN++D A  L +EMCERGL PNDVIFTTL
Sbjct: 292 DVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTL 351

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           I GH +NG+ID+                              GD+  AR IVD M   GL
Sbjct: 352 IHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGL 411

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PDK+TYT L+DGFC+ GD+++AL+IRKEM + GIELD V F+ALI G C+ G+V++AER
Sbjct: 412 RPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAER 471

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            LREML+ G+KPDD TYTM++D FCK GD +TGF+LLKEM+SDGH+P V TYN L+NGLC
Sbjct: 472 ALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLC 531

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
           K GQ+KNA+MLLD ML++GVVPDDITYN LLEGH +H N     K + E G+V+D A Y 
Sbjct: 532 KLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPEIGIVADLASYK 591

Query: 452 SLVSK 456
           SLV++
Sbjct: 592 SLVNE 596


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/493 (56%), Positives = 352/493 (71%), Gaps = 34/493 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL--- 57
           P FR TLH YSTM HFL +H + SQ   L   I+SK G  SS SL +S+++T  TH    
Sbjct: 93  PPFRHTLHNYSTMAHFLSSHNLLSQTHSLFLFIISKMGHHSSTSLISSLIQTVPTHHRHN 152

Query: 58  -PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL-PTVTLG 115
              LV DAL+I Y D  F++DAIQC RL++K+ F IP  GC  L+ R+M+ N  P     
Sbjct: 153 HSVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWE 212

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           FYLE+LDYGY P+VY+FN+LMH  CK G + +A+MVFDE  +RGL  + VSFNTLI+G+C
Sbjct: 213 FYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYC 272

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           ++KN++EGF LKSVME   + PDV+TYSALINGLCKE+R+++A  L  EMCE GL PN V
Sbjct: 273 RSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGV 332

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
            FTTLIDG CK+G+ID+A                             GD+KEARK+++EM
Sbjct: 333 TFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEM 392

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
             NG  PDKIT+T L+DG CK+GD++SAL+I+  M++ GIELD+VAFTALISG CR G+V
Sbjct: 393 IGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRV 452

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            +AERML++ML  G KPDD TYTMVIDCFCK GD K G +LLKEM+ DG +P V TYNAL
Sbjct: 453 RDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNAL 512

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
           MNG CK GQ+KNA MLL  ML++ VVP+DIT+NILL+GHCKHG+  DF     EKGLVSD
Sbjct: 513 MNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIFNGEKGLVSD 572

Query: 447 YACYTSLVSKSSK 459
           YA YT+LV++S K
Sbjct: 573 YASYTALVNESIK 585


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/403 (58%), Positives = 289/403 (71%), Gaps = 31/403 (7%)

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTV--TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145
           H F +P +GC  L+ R++R     +  +  FYLE+LD GY P+ + FNVLMH  CK G +
Sbjct: 99  HLFPVPVQGCENLLRRVVRLRPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGV 158

Query: 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
             A++VFDE  KRGL  T VSFNTLI+G CKA  ++EGFRLK VME   + PDV+T+SAL
Sbjct: 159 GSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSAL 218

Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------ 253
           INGLCKE RLD+  LL  EMC +GL PN V FT LIDG CK G++D+A            
Sbjct: 219 INGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGV 278

Query: 254 -----------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
                            GD+KEAR++V+EM  +GL PD+IT+T L+DG CK GD+ESAL+
Sbjct: 279 RPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALE 338

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I++ M++ GIELD+VAFT LISG CR G+V +AERMLR+ML  G KPDD TYTMV+DCFC
Sbjct: 339 IKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFC 398

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G+   GF+LLKEM+SDGH+P V TYNALMNGLCK GQ+KNA MLLD ML++GV P+DI
Sbjct: 399 KKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDI 458

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           TYNILLEGH KHG+  D D   SEKGLV DYA YT+LV++SSK
Sbjct: 459 TYNILLEGHSKHGSSVDVDIFNSEKGLVKDYASYTALVNESSK 501


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/418 (53%), Positives = 292/418 (69%), Gaps = 30/418 (7%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL- 60
           +FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILETRGT    + 
Sbjct: 14  NFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQRSDIY 73

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V   L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EI
Sbjct: 74  VFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEI 133

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L+ GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +L
Sbjct: 134 LECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTL
Sbjct: 194 DEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 253

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           IDGHCKNGR+D+A                             GD+K+A  ++DEM   GL
Sbjct: 254 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGL 313

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PDKITYT L+DG CKEGDL+SA + RK MI+  I LD VA+TALISG C+ G+ V+AE+
Sbjct: 314 KPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEK 373

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           MLREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 374 MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 167/336 (49%), Gaps = 13/336 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK--NLDEGFRL 186
           +YVF+ L+    + G ++DA   +    +        +   ++    K K   L  GF  
Sbjct: 72  IYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGF-Y 130

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ +
Sbjct: 131 EEILE-CGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G+
Sbjct: 190 ------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL 243

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K    
Sbjct: 244 VPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHH 303

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L+ EM   G  P   TY  L++G CK G L +A      M+   +  D++ Y  L+ G C
Sbjct: 304 LIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLC 363

Query: 427 KHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           + G   D +K+  E    GL  D   YT ++++  K
Sbjct: 364 QEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 148/307 (48%), Gaps = 45/307 (14%)

Query: 188 SVMEGSG-MRPDVYTYSALINGLCKENRLDDA--------------------ELLLH--- 223
           +++E  G  R D+Y +S LI    +   L DA                    ++L H   
Sbjct: 60  AILETRGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMK 119

Query: 224 ------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                       E+ E G   +   F  L+   CK+G      D++ A+ + D +   GL
Sbjct: 120 LKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG------DIRLAQSVFDAITKWGL 173

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  ++Y  L++G+ + GDL+    ++  M+  G++ D   ++ LI+G C+  K+ +A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 233

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EML  GL P+  T+T +ID  CKNG       + K+M S    P + TYN L+ GLC
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 293

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           K G LK A+ L+D M   G+ PD ITY  L++G CK G+ +   +  K   ++ +  D  
Sbjct: 294 KKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEV 353

Query: 449 CYTSLVS 455
            YT+L+S
Sbjct: 354 AYTALIS 360


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/417 (53%), Positives = 291/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y  M+HFL +H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCAMIHFLCSHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++LGFL DAI C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG+ PDVYTYS LINGLCKE+++DDA  L  EM E+GL PN V FTTLI
Sbjct: 195 EGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNG +D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 166/337 (49%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    D +     H   V F+T   ++    K K     + 
Sbjct: 72  IYVFSGLITAYLELGFLRDA---IDCYRLTREHKFCVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V + TL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G++PD  TY++L++G CKE  ++ A  +  EM+++G
Sbjct: 189 R------LGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKG 242

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  ++V FT LI G C+ G V  A  + ++ML   L PD  TY  +I   CK GD K   
Sbjct: 243 LVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAH 302

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G 
Sbjct: 303 DLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGL 362

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCK 399


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/417 (52%), Positives = 291/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLWEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN VIFTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+   ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL++A + RK+MI+  I LD VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 129 F-YKEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 187 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 241 KGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  D++ Y  L+ 
Sbjct: 301 VHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALIS 360

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 361 GLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCK 399


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/417 (53%), Positives = 288/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+I ET GT    J V
Sbjct: 15  FRHTLHXYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIXETXGTQRSDJYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL+SA + RK MI+  I LD VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 171/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 72  JYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 129 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 187 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 241 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L +A      M+   +  D++ Y  L+ 
Sbjct: 301 AHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALIS 360

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 361 GLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/417 (52%), Positives = 289/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+I ET+GT    L V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQRSDLYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CK+GDL++A + RK MI+    LD+V +TALISG CR G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 165/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K     + 
Sbjct: 72  LYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G
Sbjct: 189 R------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKG 242

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  ++V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K   
Sbjct: 243 LVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 302

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L  A      M+      DD+ Y  L+ G 
Sbjct: 303 HLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGL 362

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 363 CREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/417 (52%), Positives = 292/417 (70%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A++L+ ++VS+KG  S++++FA+ILET+GT    + V
Sbjct: 13  FRHTLHSYCTMIHFLCTHQMLPEAKNLIQVVVSRKGKNSASAVFAAILETQGTQRSDIYV 72

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +   FY EIL
Sbjct: 73  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEIL 132

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG I+ A  VFD   K GL  + VSFNTL+NG+ +  +LD
Sbjct: 133 ECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 192

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM ++GL PN V FTTLI
Sbjct: 193 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 252

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 253 DGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLK 312

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKI+YT L+DG CKEGDLE+A + RK MI+  I LD+VA+TALISG C+ G+ ++AE+M
Sbjct: 313 PDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKM 372

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGL+PD  TYTM+I+ FCK GD  TG +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 373 LREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 166/337 (49%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K     + 
Sbjct: 70  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWX 126

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CKE  +  A  +   + + GL P+ V F TL++G+ 
Sbjct: 127 FYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYI 186

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G
Sbjct: 187 R------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 240

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K   
Sbjct: 241 LVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 300

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EMR  G  P   +Y  L++G CK G L+ A      M+   +  DD+ Y  L+ G 
Sbjct: 301 DLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGL 360

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 361 CQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCK 397


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/414 (52%), Positives = 290/414 (70%), Gaps = 30/414 (7%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDA 64
           TL +Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V   
Sbjct: 1   TLDSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSG 60

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ MM+     +  GFY EIL+ G
Sbjct: 61  LITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILECG 120

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y  S+Y FN+LMH+ CKEG I+ AQ VF+   K GL  + VSFNTL+NG+ +  +LDEGF
Sbjct: 121 YPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 180

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           RLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM ++GL PN V FTTLIDGH
Sbjct: 181 RLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGH 240

Query: 245 CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
           CK+GR+D+A                             GD+K+A  ++DEM   GL PDK
Sbjct: 241 CKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 300

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ITYT L+DG CKEGDLE+A + RK MI+  I LD+VA+TALISG C+ G+ ++AE++LRE
Sbjct: 301 ITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLRE 360

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           ML  GLKPD  TYTM+I+ FCK GD  TG +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 361 MLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 172/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 55  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWG 111

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CKE  +  A+ + + + + GL P+ V F TL++G
Sbjct: 112 F-YEEILE-CGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNG 169

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 170 YIR------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 223

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 224 KGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 283

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 284 AHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALIS 343

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 344 GLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCK 382


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/417 (52%), Positives = 289/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PD YTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCK GR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G RLLKEM+ +GH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 129 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 187 YIR------LGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLV 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + + ML   L PD  TY  +I   CK GD K 
Sbjct: 241 KGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 301 ANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 361 GLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 399



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 148/307 (48%), Gaps = 45/307 (14%)

Query: 188 SVMEGSG-MRPDVYTYSALINGLCKENRLDDA--------------------ELLLH--- 223
           +++E  G  R D+Y +S LI    +   L DA                    ++L H   
Sbjct: 60  AILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMK 119

Query: 224 ------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                       E+ E G   +   F  L+   CK+G      D++ A+ + D +   GL
Sbjct: 120 LKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG------DIRVAQSVFDAITKWGL 173

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  ++Y  L++G+ + GDL+    ++  M+  G++ D   ++ LI+G C+  K+ +A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANE 233

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EML  GL P+  T+T +ID  CK G       + K M S   LP + TYN L+ GLC
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLC 293

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           K G LK AN L+D M+  G+ PD ITY  L++G CK G+ +   +  K   ++ +  D  
Sbjct: 294 KKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 353

Query: 449 CYTSLVS 455
            YT+L+S
Sbjct: 354 AYTALIS 360


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/417 (52%), Positives = 290/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLLEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
           L  L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  LSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLN 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TY  L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPDD TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 9/269 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ +       
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR------L 190

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G+  + V F
Sbjct: 191 GDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 250

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           T LI G C+ G+V  A  + ++ML   L PD  TY  +I    K GD K    L+ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSM 310

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G C+ G   D
Sbjct: 311 KGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 434 FDKLQSEK---GLVSDYACYTSLVSKSSK 459
            +K+  E    GL  D   YT ++++  K
Sbjct: 371 AEKMLREMLSVGLKPDDRTYTMIINEFCK 399



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            E+ E G   +   F  L+   CK+G      D++ A+ + D +   GL P  ++Y  L+
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDG------DIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G+ + GDL     ++  M+  G++ D   ++ LI+G C+  K+ +A  +  EML  GL 
Sbjct: 185 NGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLI 244

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  T+T +ID  CKNG       + K+M S   LP + TYN L+ GL K G LK A+ L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDL 304

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           +D M   G+ PD  TY  L++G CK G+ +   +  K   ++ +  D   YT+L+S
Sbjct: 305 IDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/417 (52%), Positives = 289/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ LL ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLLQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  +AVS+NTL+NG+ +   LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGL KE+++DDA+ L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++D+M   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL+SA + RK MI+  I LD+V +TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGL PD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWG 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 129 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNG 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + + G +D    +K A      M  +G+ PD  TY++L++G  KE  ++ A ++  EM+ 
Sbjct: 187 YIRLGVLDEGFRLKSA------MLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLV 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 241 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ +M   G  P   TY  L++G CK G L +A      M+   +  DD+ Y  L+ 
Sbjct: 301 AHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALIS 360

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 361 GLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCK 399


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/417 (51%), Positives = 289/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 13  FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 72

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              ++  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 73  FSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 132

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH  CKEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +L+
Sbjct: 133 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 192

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E FRLK  M+ SG++PDVYTYS LINGLCKE+++DD   L  EM + GL PN V FTTLI
Sbjct: 193 EXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLI 252

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 253 DGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 312

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + R  MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 313 PDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 372

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKP+  TYTM+I+ FCK GD  TG +L+KEM+ DG++P+V TYN LMNG
Sbjct: 373 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ ++    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 70  IYVFSGIITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 126

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 127 FYEESL--ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 184

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++   ++  EM+ 
Sbjct: 185 YIK------LGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLD 238

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 239 XGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQ 298

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 299 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALIS 358

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 359 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 397


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/417 (52%), Positives = 290/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R++   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKEN++DDA  L  EM  + L PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQ 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 45/307 (14%)

Query: 188 SVMEGSG-MRPDVYTYSALINGLCKENRLDDA--------------------ELLLH--- 223
           +++E  G  R D+Y +S LI G  +   L DA                    ++L H   
Sbjct: 60  AILETKGTQRSDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMK 119

Query: 224 ------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                       E+ E G   +   F  L+   CK+G      D++ A+ + D +   GL
Sbjct: 120 LKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG------DIRVAQSVFDAITKWGL 173

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  ++Y  L++G+ + GDL+    ++  M+  G++ D   ++ LI+G C+  K+ +A +
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANK 233

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EML   L P+  T+T +ID  CKNG       + K+M S   LP + TYN L+ GLC
Sbjct: 234 LFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLC 293

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           K G LK AN L+D M   G+ PD ITY  L++G CK G+ +   +  K   ++ +  D  
Sbjct: 294 KKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 353

Query: 449 CYTSLVS 455
            YT+L+S
Sbjct: 354 AYTALIS 360



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 9/269 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ +       
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR------L 190

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ + +  + V F
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTF 250

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           T LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K    L+ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSM 310

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G C+ G   D
Sbjct: 311 KGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 434 FDKLQSEK---GLVSDYACYTSLVSKSSK 459
            +K+  E    GL  D   YT ++++  K
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCK 399


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/410 (53%), Positives = 287/410 (70%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A+ L+ +IVS+KG  S++++FA+ILET+GT    + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLPEAKSLIQVIVSRKGKDSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DA++CFRL R+H F +P   CR ++D +M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+I+ AQ+VFD   K GL  + VSFNTL+NG+ K   LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M  SG +PDVYTYS LINGLCKE+++D+A  L  EM E+GL PN V FTTLI
Sbjct: 189 EGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNG++D+A                             GD+K+ R ++DEM   GL 
Sbjct: 249 DGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK+MI+  I LD+V +TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD  TYT+V++ FCKNGD  TG +LLKEM+ DGH+P+V T
Sbjct: 369 LREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 177/339 (52%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + F     H   V F+T   +++   K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---LECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  A+L+   + + GL P+ V F TL++G
Sbjct: 123 F-YKEILE-CGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K G +D      E  ++ + M  +G  PD  TY++L++G CKE  ++ A ++  EM++
Sbjct: 181 YIKMGILD------EGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLE 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ GK+  A  + +++L  GL PD  TY  +I  FCK GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M++  +  DD+ Y  L+ 
Sbjct: 295 TRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G CK G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCK 393


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/417 (52%), Positives = 290/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 11  FRHTLHSYCTMIHFLCTHQMLSEAKXLIQVVVSRKGKGSASAVFAAILETKGTQRSDIFV 70

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++  FL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY  IL
Sbjct: 71  FSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKXIL 130

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 131 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 190

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 191 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 250

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 251 DGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK 310

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 311 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKM 370

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKP+  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 371 LREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 10/276 (3%)

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ +
Sbjct: 127 KXILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 185

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G+
Sbjct: 186 ------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL 239

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V FT LI G C+ G+V  A  + + ML   L PD  TY  +I   CK GD K    
Sbjct: 240 VPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHH 299

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G C
Sbjct: 300 LIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLC 359

Query: 427 KHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           + G   D +K+  E    GL  +   YT ++++  K
Sbjct: 360 QEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCK 395


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/414 (52%), Positives = 286/414 (69%), Gaps = 30/414 (7%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDA 64
           TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+I ET+GT    L V   
Sbjct: 1   TLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQRSDLYVFSG 60

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL+ G
Sbjct: 61  LITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECG 120

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGF
Sbjct: 121 YPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 180

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           RLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLIDGH
Sbjct: 181 RLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGH 240

Query: 245 CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
           CKNGR+D+A                             GD+K+A  ++DEM   GL PDK
Sbjct: 241 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK 300

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ITYT L+DG CK+GDL++A + RK MI+    LD+V +TALISG CR G  V+AE+MLRE
Sbjct: 301 ITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLRE 360

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           ML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 361 MLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 165/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K     + 
Sbjct: 55  LYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ 
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G
Sbjct: 172 R------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKG 225

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  ++V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K   
Sbjct: 226 LVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 285

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L  A      M+      DD+ Y  L+ G 
Sbjct: 286 HLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGL 345

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 346 CREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 382


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/417 (52%), Positives = 286/417 (68%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++ +FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASXVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKSVM  SG++PDVYTYS LINGLCKE+++DDA     EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++D+M   GL 
Sbjct: 255 DGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+BG CKEGDL+SA + RK MI+  I LD+V +TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML V LKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH P+V TYN LMNG
Sbjct: 375 LREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 169/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWG 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V   TL++G
Sbjct: 129 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNG 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A +   EM+ 
Sbjct: 187 YIR------LGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLV 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A+ + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 241 KGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ +M   G  P   TY  L+BG CK G L +A      M+   +  DD+ Y  L+ 
Sbjct: 301 AHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALIS 360

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E     L  D   YT ++++  K
Sbjct: 361 GLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCK 399


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 289/410 (70%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A+ L+ ++VS+KG  S++++FA+ILET+GT    + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLLEAKTLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H FR+P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+I+ +Q VFD   K GL  + VSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +GFRLKS M  SG++PDVYTYS LINGLCKE+++D+A  L  EM ++GL PN V FTTLI
Sbjct: 189 KGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNG++D+A                             GD+K+AR +++EM   GL 
Sbjct: 249 DGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CK+GDLE+A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD  TYTM+I+ FCK GD  TG +LLKEM+ DGH+P+V T
Sbjct: 369 LREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 172/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  ++ +   + + GL P+ V F TL++G
Sbjct: 123 F-YKEILE-CGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + + G +D    +K A      M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIRQGDLDKGFRLKSA------MHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ GKV  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M++  +  DD+ Y  L+ 
Sbjct: 295 ARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCK 393


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/417 (52%), Positives = 288/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+ L R+H   +P   CR +++ +M+     +  GFY +IL
Sbjct: 69  FSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 189 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ +GH P+V TYN LMNG
Sbjct: 369 LREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 168/343 (48%), Gaps = 27/343 (7%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +YVF+ L+    + G ++DA    + +     H   V F+T     C+ K L+   +LK 
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYTLTREHKLWVPFDT-----CR-KVLEHLMKLKY 116

Query: 189 VMEGSGMRPDV---------YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                G   D+         Y ++ L++  CK+  +  A+ +   + + GL P+ V + T
Sbjct: 117 FKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNT 176

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L++G+ +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  
Sbjct: 177 LMNGYIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK G
Sbjct: 231 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           D K    L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y 
Sbjct: 291 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 350

Query: 420 ILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            L+ G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCK 393


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/417 (52%), Positives = 286/417 (68%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 12  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 71

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 72  FSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 131

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 132 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLD 191

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG+ PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 192 EGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 251

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D A                             GD+K+A  ++DEM   GL 
Sbjct: 252 DGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 311

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A + RK MI+  I LD+VA+ ALISG C+ G+ V+AE+M
Sbjct: 312 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKM 371

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ +GH P+V TYN LMNG
Sbjct: 372 LREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 169/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 69  IYVFSGLITAYLETGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 125

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 126 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 183

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + + G +D    +K A      M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 184 YIRLGHLDEGFRLKSA------MLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLV 237

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + + ML   L PD  TY  +I   CK GD K 
Sbjct: 238 KGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQ 297

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 298 AHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALIS 357

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 358 GLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 396


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/417 (52%), Positives = 288/417 (69%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
            GHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 XGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A   RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ +GH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 169/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K +   L  G
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWG 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 129 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 187 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + + ML   L PD  TY  +I   CK GD K 
Sbjct: 241 KGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 301 AHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALIS 360

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 361 GLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCK 399


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/417 (52%), Positives = 286/417 (68%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA++LET+G     + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++D A  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM  DGH P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 165/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K     + 
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G
Sbjct: 189 R------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKG 242

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K   
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 302

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G 
Sbjct: 303 DLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 362

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 399


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 289/410 (70%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGQGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY + L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEDSL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+IK AQ VFD   K GL  TAVSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++D A  L +EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK+TYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +L+KEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 168/343 (48%), Gaps = 27/343 (7%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +YVF+ L+    + G ++DA    + +     H   V F+T     C+ K L+   +LK 
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDT-----CR-KVLEHLMKLKY 116

Query: 189 VMEGSGMRPD---------VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                G   D         +Y ++ L++  CKE  +  A+ +   + + GL P  V F T
Sbjct: 117 FKLVWGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNT 176

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L++G+ +       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  
Sbjct: 177 LMNGYIR------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFN 230

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+  G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK G
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           D K    L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y 
Sbjct: 291 DLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 420 ILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            L+ G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/412 (52%), Positives = 285/412 (69%), Gaps = 30/412 (7%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALM 66
           H+Y TM+HFL   +M S+A+ L+ ++VS+KG GS++++FA+I+ET+GT    L V   L+
Sbjct: 1   HSYCTMIHFLCTQQMLSEAKSLIQVVVSRKGKGSASAVFAAIVETKGTQRSDLYVFSGLI 60

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL+ GY 
Sbjct: 61  TAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYP 120

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGFRL
Sbjct: 121 ASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRL 180

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           KS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLIDGHCK
Sbjct: 181 KSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCK 240

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           NGR+D+A                             GD+K+A  ++DEM    L PDKIT
Sbjct: 241 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKIT 300

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L+DG CKEGDL+SA + RK MI+  I LD VA+TALISG C+ G+ V+AE+MLREML
Sbjct: 301 YTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREML 360

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 361 NVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 53  LYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 110 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 167

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 168 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 221

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 222 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 281

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM      P   TY  L++G CK G L +A      M+   +  D++ Y  L+ 
Sbjct: 282 AHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALIS 341

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 342 GLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCK 380


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/417 (51%), Positives = 287/417 (68%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H++ S+A+ L+ ++VS+KG GS++++FA++LET+G     + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQLLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++D A  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+++ FCK GD   G +LLKEM+ DGH P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 169/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 129 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ 
Sbjct: 187 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLV 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 241 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 301 AHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT +V++  K
Sbjct: 361 GLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCK 399


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/410 (53%), Positives = 284/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +I+ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH  CK G+I  AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKSVM+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALIS  C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG+LP V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 166/339 (48%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   +I    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++  CK   +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ 
Sbjct: 181 YIK------IGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + R+ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
             C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 XLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 288/410 (70%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA +L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 169/346 (48%), Gaps = 33/346 (9%)

Query: 129 VYVFNVLMHKLCKEGKIKDA------------QMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +YVF+ L+    + G ++DA            ++ FD   K   H   + +  L+ G  +
Sbjct: 66  IYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYE 125

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            +NL+ G+              +Y ++ L++   KE  +  A+ +   + + GL P+ V 
Sbjct: 126 -ENLECGYP-----------ASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVS 173

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F TL++G+ K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A  
Sbjct: 174 FNTLMNGYIK------LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANV 227

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EM+ +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   C
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD K    L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+
Sbjct: 288 KKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            Y  L+ G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/417 (52%), Positives = 286/417 (68%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 1   FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYV 60

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GF  DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 61  FSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 120

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 121 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 180

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 181 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 240

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DG CKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 241 DGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 300

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 301 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 360

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML V LKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH P+V TYN LMNG
Sbjct: 361 LREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 167/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G  +DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 58  IYVFSGLITAYLESGFXRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 114

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 115 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 172

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 173 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 226

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + + ML   L PD  TY  +I   CK GD K 
Sbjct: 227 KGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQ 286

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 287 AHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 346

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E     L  D   YT ++++  K
Sbjct: 347 GLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCK 385


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/410 (52%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+JLET+GT +  + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMIPEAKXLIQIVVSRKGKGSASAVFAAJLETKGTQISDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +I+ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ + DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 3/185 (1%)

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           + IL+  F KEG++  A  +   + K G+    V+F  L++G+ + G + E  R+   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G++PD  TY+++I+  CK         L  EM  +G +P   T+  L++G CK+G++ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
            A  +   ML   + PD ITYN L+ G CK G+    +D     S KGL  D   YT+L+
Sbjct: 259 LAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLI 318

Query: 455 SKSSK 459
             S K
Sbjct: 319 DGSCK 323


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/414 (51%), Positives = 284/414 (68%), Gaps = 30/414 (7%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDA 64
           TLH+Y TM+HFL  H+M S+A+ L+  +VS+KG GS++++FA+ILET+GT    + V   
Sbjct: 1   TLHSYCTMIHFLCTHQMLSEAKSLIQFVVSRKGKGSASAVFAAILETKGTQRSDIXVFSG 60

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL+ G
Sbjct: 61  LITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEILECG 120

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y  S+Y FN+LMH+ CKEG I+ AQ VFD   K GL  + VS+NTL++G+ +  +LDEGF
Sbjct: 121 YPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGF 180

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           RLKS M  SG++PDVYTYS LINGLCKE ++D+A  L  EM   GL P  V FTTLIDGH
Sbjct: 181 RLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGH 240

Query: 245 CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
           CKNGR+D+A                             GB+K+A  ++ EM   G  PDK
Sbjct: 241 CKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDK 300

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+MLRE
Sbjct: 301 ITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 360

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           ML VG KPD  TYTM+I+ FCK GD  TG +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 361 MLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 9/269 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V + TL+ G+ +       
Sbjct: 120 GYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIR------L 173

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+  G+    V F
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTF 233

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           T LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GB K    L+ EM  
Sbjct: 234 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSL 293

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G C+ G   D
Sbjct: 294 KGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 353

Query: 434 FDKLQSEK---GLVSDYACYTSLVSKSSK 459
            +K+  E    G   D   YT ++++  K
Sbjct: 354 AEKMLREMLSVGXKPDTRTYTMIINEFCK 382



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 122/236 (51%), Gaps = 9/236 (3%)

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            E+ E G   +   F  L+   CK G I      + A+ + D +   GL P  ++Y  L+
Sbjct: 114 QEILECGYPASLYFFNILMHRFCKEGNI------RVAQSVFDAITKWGLRPSVVSYNTLM 167

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G+ + GDL+    ++  M   G++ D   ++ LI+G C+  K+ EA  +  EML  GL 
Sbjct: 168 SGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLV 227

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P   T+T +ID  CKNG       + K+M S   LP + TYN L+ GLCK G LK A++L
Sbjct: 228 PXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVL 287

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           +  M   G  PD ITY  L++G CK G+ +   +  K   ++ +  D   YT+L+S
Sbjct: 288 IXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 343


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/412 (52%), Positives = 285/412 (69%), Gaps = 30/412 (7%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALM 66
           H+Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V   L+
Sbjct: 1   HSYCTMIHFLCTHQMLLEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLI 60

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL+ GY 
Sbjct: 61  AAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYP 120

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGF L
Sbjct: 121 ASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXL 180

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           KS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLIDGHCK
Sbjct: 181 KSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCK 240

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           NGR+D+A                             GD+K+A  ++DEM   GL PDKIT
Sbjct: 241 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKIT 300

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L++G CKEGDL+SA + RK MI+  I LD VA+TALISG C+ G+ V+AE+MLREML
Sbjct: 301 YTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREML 360

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 361 SVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 53  IYVFSGLIAAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 110 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 167

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E   +   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 168 YIR------XGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 221

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 222 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 281

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L+NG CK G L +A      M+   +  D++ Y  L+ 
Sbjct: 282 AHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALIS 341

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 342 GXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 380


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/410 (52%), Positives = 284/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT +  + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMIPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQISDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  NLD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ + DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEG LE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG+ P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K G +D      E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIKLGNLD------EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/413 (51%), Positives = 285/413 (69%), Gaps = 30/413 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDAL 65
           LH+Y TM+HFL  H+M S+A+ L+  +VS+KG GS++++FA+ILET+GT    + V   L
Sbjct: 1   LHSYCTMIHFLCTHQMFSEAKSLIQXVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGL 60

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL+ GY
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGY 120

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
             S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGFR
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           LKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLIDGHC
Sbjct: 181 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           KNGR+D+A                             GD+ +A  ++DEM   GL PDK 
Sbjct: 241 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKF 300

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TA+ISG C+ G+ V+AE+MLREM
Sbjct: 301 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREM 360

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           L VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ +GH+P+V TYN LMNG
Sbjct: 361 LSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K +   L  G
Sbjct: 54  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWG 110

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 111 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 168

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 169 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 222

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD   
Sbjct: 223 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQ 282

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  ++ 
Sbjct: 283 AHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIIS 342

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G P D +K+  E    GL  D   YT ++++  K
Sbjct: 343 GLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 381


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMRPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EMI 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMID 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/417 (52%), Positives = 285/417 (68%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++ +FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASXVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F  P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ A  VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE ++DDA  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++ EM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEG+L++A + R  MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LR ML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 164/346 (47%), Gaps = 33/346 (9%)

Query: 129 VYVFNVLMHKLCKEGKIKDA------------QMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +YVF+ L+    + G ++DA               FD   K   H   + +  L+ G   
Sbjct: 72  IYVFSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGF-- 129

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
                     K ++E  G    +Y ++ L++  CK+  +  A  +   + + GL P+ V 
Sbjct: 130 ---------YKEILE-CGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVS 179

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + TL++G+ +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A +
Sbjct: 180 YNTLMNGYIR------LGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANE 233

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EM+ +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   C
Sbjct: 234 LFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLC 293

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD K    L+ EM   G  P   TY  L++G CK G L  A      M++  +  DD+
Sbjct: 294 KKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDV 353

Query: 417 TYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
            Y  L+ G C+ G   D +K+       GL  D   YT ++++  K
Sbjct: 354 AYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCK 399



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 145/307 (47%), Gaps = 45/307 (14%)

Query: 188 SVMEGSG-MRPDVYTYSALINGLCKENRLDDA--------------------ELLLH--- 223
           +++E  G  R D+Y +S LI    +   L DA                    ++L H   
Sbjct: 60  AILETKGTQRSDIYVFSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMK 119

Query: 224 ------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                       E+ E G   +   F  L+   CK+G      D++ A  + D +   GL
Sbjct: 120 LKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDG------DIRVAXSVFDAITKWGL 173

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  ++Y  L++G+ + GDL+    ++  M   G++ D   ++ LI+G C+  K+ +A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANE 233

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EML  GL P+  T+T +ID  CKNG       + K+M S   LP + TYN L+ GLC
Sbjct: 234 LFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLC 293

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           K G LK AN L+  M   G+ PD ITY  L++G CK GN +   +      E+ +  D  
Sbjct: 294 KKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDV 353

Query: 449 CYTSLVS 455
            YT+L+S
Sbjct: 354 AYTALIS 360


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M ++A+ L+ ++VS+KG GS++++FA+ILET+GT +  + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMIAEAKTLIQIVVSRKGKGSASAVFAAILETKGTQISDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P    R +I+ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           +YGY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 EYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE++++DA  L  EM   GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ + DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEG LE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   +I    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--EYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  +E A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLN 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 155/343 (45%), Gaps = 27/343 (7%)

Query: 134 VLMHKLCKEGKIKDA----QMVFDEFGKRGLHA----------TAVS----FNTLINGHC 175
            ++H LC    I +A    Q+V    GK    A          T +S    F+ LI  + 
Sbjct: 18  TMIHFLCTHQMIAEAKTLIQIVVSRKGKGSASAVFAAILETKGTQISDIYVFSGLITAYL 77

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           ++  L +      + +    R    T   +I  L K            E  E G   +  
Sbjct: 78  ESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLY 137

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F  L+    K G I +A      + + D +   GL P  +++  L++G+ K GDL+   
Sbjct: 138 FFNILMHSFVKEGEIRLA------QSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            ++  M   G++ D   ++ LI+G C+  K+ +A  +  EML  GL P+  T+T +ID  
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGH 251

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CKNG       + K+M S    P + TYN L+ GLCK G LK A  L D M   G+ PD 
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDK 311

Query: 416 ITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           ITY  L++G CK G+ E   ++ K   ++ +  D   YT+L+S
Sbjct: 312 ITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALIS 354


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 167/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L  D  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/410 (52%), Positives = 283/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A++L+ ++VS+KG  S++++F +ILE +G     + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DA++CFRL R+H F +P   CR +++  M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+++ AQ VFDE  K GL  + VSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE++++DA  L  EM   GL PN V FTTLI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCK G ID+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+AL  RK MIK  I LD+VA+TALISG CR G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD+ TYTM+I+ FCK GD KTG +LLKEM+ DGH+P V T
Sbjct: 369 LREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           VYVF+ L+    + G + DA    + F     H   V F+T   ++    K K   L  G
Sbjct: 66  VYVFSGLITAYLESGFLHDA---LECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  A+ +  E+ + GL P+ V F TL++G
Sbjct: 123 F-YKEILE-CGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  +  A ++  EMI 
Sbjct: 181 YIR------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIG 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G +  A    +EML+ G  PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 287/410 (70%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH  CKEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +L+
Sbjct: 129 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE++LDDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCK+GR+D+A                             GD+K+A+ +++EM   GL 
Sbjct: 249 DGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +L+KEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 173/339 (51%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  L+ A ++  EM+ 
Sbjct: 181 YIK------LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  ++V+FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CKNGD K 
Sbjct: 235 NGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 286/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+H L  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLDSYCTMIHLLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMHK CK+G I+ AQ VF+   K GL  + VSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M  SG++PDVYTYS LINGLCKE+++DDA  L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+AR ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MI+  I+LD+V +TALISG C+ G+ ++AE++
Sbjct: 309 PDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKV 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD  TYTM+I+ FCK GD  TG +LLKEM+ DG +P+V T
Sbjct: 369 LREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 172/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ + + + + GL P+ V F TL++G
Sbjct: 123 F-YEEILE-CGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIR------LGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   C+ GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 ARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCK 393


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/413 (52%), Positives = 284/413 (68%), Gaps = 30/413 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDAL 65
           LH+Y TM+HFL  H+M S+A+ L+ L+VS+KG GS++ +FA+ILET+GT    + V   L
Sbjct: 1   LHSYCTMIHFLCTHQMLSEAKSLIQLVVSRKGKGSASVVFATILETKGTQRSDIYVFSGL 60

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL+ GY
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILECGY 120

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
             S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGFR
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           LKS M  +G++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLIDGHC
Sbjct: 181 LKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 240

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           KNGR+D+A                             GD+K+A  ++DEM   GL PDK 
Sbjct: 241 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L+DG CKEGDL++A   RK MI+  I LD+VA+TALISG C+ G+ V+AE+MLREM
Sbjct: 301 TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREM 360

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           L VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ +GH P+V TYN LMNG
Sbjct: 361 LSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K +   L  G
Sbjct: 54  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWG 110

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 111 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 168

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  NG+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 169 YIR------LGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 222

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + + ML   L PD  TY  +I   CKNGD K 
Sbjct: 223 KGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQ 282

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 283 AHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALIS 342

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 343 GLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCK 381


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/417 (51%), Positives = 284/417 (68%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y T +HFL  H+M S+A+ L+ ++VS+KG GS+ ++FA+ILET+GT    + V
Sbjct: 4   FRHTLHSYCTTIHFLCTHQMFSEAKSLIQVVVSRKGKGSAXAVFAAILETKGTQRSDIYV 63

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 64  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEIL 123

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ A +VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 124 ECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 183

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+ +DDA  L  EM  +GL PN V FTTLI
Sbjct: 184 EGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLI 243

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+ +A  ++DEM   GL 
Sbjct: 244 DGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLK 303

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+  +AE+M
Sbjct: 304 PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKM 363

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ +GH+P V TYN LMNG
Sbjct: 364 LREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 164/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K +     + 
Sbjct: 61  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWG 117

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CK+  +  A L+   + + GL P+ V + TL++G+ 
Sbjct: 118 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYI 177

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G
Sbjct: 178 R------LGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKG 231

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  ++   CK GD     
Sbjct: 232 LVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAH 291

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G 
Sbjct: 292 GLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGL 351

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 352 CQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCK 388


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 287/410 (70%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +L+
Sbjct: 129 ECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA +L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG+ P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 33/346 (9%)

Query: 129 VYVFNVLMHKLCKEGKIKDA------------QMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +YVF+ L+    + G ++DA            ++ FD   K   H   + +  L+ G  +
Sbjct: 66  IYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYE 125

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            +NL+ G+              +Y ++ L++G  KE  +  A+ +   + + GL P+ V 
Sbjct: 126 -ENLECGYP-----------ASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVS 173

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F TL++G+ K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A  
Sbjct: 174 FNTLMNGYIK------LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANV 227

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EM+ +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   C
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD K    L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+
Sbjct: 288 KKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            Y  L+ G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+JLET+GT +  + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMIXEAKTLIQIVVSRKGKGSASAVFAAJLETKGTQISDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +J+ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ + DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEG LE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   +J    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 156/345 (45%), Gaps = 27/345 (7%)

Query: 132 FNVLMHKLCKEGKIKDA----QMVFDEFGKRGLHA----------TAVS----FNTLING 173
           +  ++H LC    I +A    Q+V    GK    A          T +S    F+ LI  
Sbjct: 16  YCTMIHFLCTHQMIXEAKTLIQIVVSRKGKGSASAVFAAJLETKGTQISDIYVFSGLITA 75

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           + ++  L +      + +    R    T   +J  L K            E  E G   +
Sbjct: 76  YLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPAS 135

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              F  L+    K G I +A      + + D +   GL P  +++  L++G+ K GDL+ 
Sbjct: 136 LYFFNILMHSFVKEGEIRLA------QSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
              ++  M   G++ D   ++ LI+G C+  K+ +A  +  EML  GL P+  T+T +ID
Sbjct: 190 GFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CKNG       + K+M S    P + TYN L+ GLCK G LK A  L D M   G+ P
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKP 309

Query: 414 DDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           D ITY  L++G CK G+ E   ++ K   ++ +  D   YT+L+S
Sbjct: 310 DKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALIS 354


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA JLET+GT +  + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMIPEAKTLIQIVVSRKGKGSASAVFAXJLETKGTQISDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+I Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLIIAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE++++DA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+ +A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A   RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLIIAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  +E A ++ +EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y +M+HFL  H+M  +A+ L+ ++VS+KG GS++++FA ILET+GT    + V
Sbjct: 9   FRHTLQSYCSMIHFLCTHQMIPEAKTLIQIVVSRKGKGSASAVFAEILETKGTQTSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+ +A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+AL+ RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 171/342 (50%), Gaps = 19/342 (5%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NL 180
           +  +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L
Sbjct: 63  TSDIYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKL 119

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
             GF  +S+    G    +Y ++ L++   KE  +  A+ +   + + GL P+ V F TL
Sbjct: 120 VWGFYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTL 177

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ++G+ K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  E
Sbjct: 178 MNGYIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDE 231

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+  G+  + V FT LI G C+ G+VV A  + ++ML   L PD  TY  +I   CK GD
Sbjct: 232 MLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            K    L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTA 351

Query: 421 LLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           L+ G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR  L +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHNLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK+MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 286/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL   +M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTQQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA +L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCK 393


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/410 (52%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A+ L+ ++VS+KG  S++++FA+ILET+GT    + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GF+ DAI+ FRL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+++ AQ VFD   K GL  + VSFNTL++G+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++D+A  L +EM + GL PN V FTTLI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+AR ++DEM    L 
Sbjct: 249 DGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LR ML VGLKPD+ TYTM+I+ FCK GD KTG +LLKEM  DGH+P V T
Sbjct: 369 LRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 167/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G I+DA    + F     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFIRDA---IEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL+ G
Sbjct: 123 F-YKEILE-CGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIR------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + +++L  G  PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM      P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 ARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+       GL  D   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCK 393


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 281/410 (68%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH Y TM+HFL  H+M  +A+ L+ ++VS+KG  S++++FA+IL T+GT    + V
Sbjct: 9   FRHTLHTYCTMIHFLCTHQMLLEAKSLIRIVVSRKGKDSASAVFAAILGTKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              LM  Y++ GF+ DAIQCFRL +KH F +P   CR +++ +M+     +   FY EIL
Sbjct: 69  FSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN++MH+ CKEG+++ AQ VFD   K GL  + VSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++D+A  L +EM +RGL PN V FTTLI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           D HCKNG +D A                             GD+K+ R ++DEM  NGL 
Sbjct: 249 DVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LDNVA+TAL+SG C+ G+  +AE+M
Sbjct: 309 PDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            REML VGLKPD+ TYTM+I+ FCK GD +T  RLLKEM+ DGH+P V T
Sbjct: 369 FREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 165/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ LM    + G + DA   F    K   H   V F+T   ++    K K     + 
Sbjct: 66  IYVFSGLMTAYLESGFVHDAIQCFRLTKK---HKFWVPFDTCRKVLEHLMKLKYFKLVWD 122

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ +++  CKE  +  A+ +   + + GL P+ V F TL++G+ 
Sbjct: 123 FYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ RG
Sbjct: 183 R------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRG 236

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI   C+ G V  A  + ++ML  G  PD  TY  +I   CK GD K   
Sbjct: 237 LVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVR 296

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM  +G  P   TY  L++G CK G L+ A      M+   +  D++ Y  L+ G 
Sbjct: 297 ALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGL 356

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G  +D +K+  E    GL  D   YT ++++  K
Sbjct: 357 CQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCK 393


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL   +M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTQQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCK 393


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/417 (51%), Positives = 281/417 (67%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+I ET GT    J V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIXETXGTQRSDJYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL  +H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LING CKE++ DDA  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL+ A +  K MI+    LD V +TALISG C  G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 9/235 (3%)

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           E+ E G   +   F  L+   CK+G      D++ A+ + D +   GL P  ++Y  L++
Sbjct: 132 EILECGYPASLYFFNILMHRFCKDG------DIRJAQSVFDAITKWGLRPSVVSYNTLMN 185

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G+ + GDL+    ++  M+  G++ D   ++ LI+G C+  K  +A  +  EML  GL P
Sbjct: 186 GYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVP 245

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +   +T +ID  CKNG       + K+M S    P + TYN L+ GLCK G LK A+ L+
Sbjct: 246 NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 305

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           D M   G+ PD ITY  L++G CK G+ +   +  K   ++    D   YT+L+S
Sbjct: 306 DEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALIS 360


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/410 (52%), Positives = 281/410 (68%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+I ET GT    J V
Sbjct: 9   FRHTLHXYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIXETXGTQRSDJYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 189 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL+SA + RK MI+  I LD VA+TAL SG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V T
Sbjct: 369 LREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  JYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 123 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L +A      M+   +  D++ Y  L  
Sbjct: 295 AHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 393


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 283/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++S+FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASSVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM +  L PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A   RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 167/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             +  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 286/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTLRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA +L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG+ P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 169/346 (48%), Gaps = 33/346 (9%)

Query: 129 VYVFNVLMHKLCKEGKIKDA------------QMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +YVF+ L+    + G ++DA            ++ FD   K   H   + +  L+ G  +
Sbjct: 66  IYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYE 125

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            +NL+ G+              +Y ++ L++   KE  +  A+ +   + + GL P+ V 
Sbjct: 126 -ENLECGYP-----------ASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVS 173

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F TL++G+ K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A  
Sbjct: 174 FNTLMNGYIK------LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANV 227

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EM+ +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   C
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD K    L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+
Sbjct: 288 KKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            Y  L+ G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 284/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG +P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/410 (52%), Positives = 280/410 (68%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A++L+ ++VS+KG  S++++F +ILE +G     + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DA++CFRL R+H F +P   CR +++  M+        GFY EIL
Sbjct: 69  FSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+++ AQ VFDE  K GL  + VSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M GSG++PDVYTYS LINGLCKE++++DA  L  EM   GL PN V FTTLI
Sbjct: 189 EGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCK G ID+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A   +K MIK  I LD+VA+TALISG CR G+ V AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD+ TYTM+I+ FCK GD K G +LLKEM+ DGH+P V T
Sbjct: 369 LREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 162/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           VYVF+ L+    + G + DA    + F     H   V F+T   ++    K K     + 
Sbjct: 66  VYVFSGLITAYLESGFLHDA---LECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWG 122

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CKE  +  A+ +  E+ + GL P+ V F TL++G+ 
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  +  A ++  EMI  G
Sbjct: 183 R------LGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNG 236

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI G C+ G +  A    +EML+ G  PD  TY  +I   CK GD K   
Sbjct: 237 LVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQ 296

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGL 356

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G     +K+  E    GL  D   YT ++++  K
Sbjct: 357 CREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCK 393


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/410 (52%), Positives = 281/410 (68%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLV 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT      V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDXYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +I+ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH  CKEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKSVM+ SG+ PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I  D+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+  CK GD  TG +LLKEM+  G++P V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 38/216 (17%)

Query: 278 YTILLDGFCKE-----------------------------------GDLESALDIRKEMI 302
           + IL+  FCKE                                   GDL+    ++  M 
Sbjct: 139 FNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G+  D   ++ LI+G C+  K+ +A  +  EML  GL P+  T+T +ID  CKNG   
Sbjct: 199 ASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVD 258

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               + ++M S   LP + TYN L+ GLCK G LK A+ L+D M   G+ PD ITY  L+
Sbjct: 259 LAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 318

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           +G CK G+ E   ++ K   ++ +  D   YT+L+S
Sbjct: 319 DGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALIS 354


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL++Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 1   FRHTLYSYCTMIHFLCTHQMLPEAKSLIQVVVSRKGKGSASAVFAAILETKGTLRSDIYV 60

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   C+ +++ +M+     +  GFY EIL
Sbjct: 61  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEIL 120

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+I+ A+ VFD   K GL  + VSFNTL+NG+ +  +LD
Sbjct: 121 ECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 180

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG+ PDVYTYS LINGLCKE+++D A  L  EM ++GL PN V FTTLI
Sbjct: 181 EGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLI 240

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 241 DGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLK 300

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MI+  I LD+V +T LISG C+ G+ V+AE+M
Sbjct: 301 PDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKM 360

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD  TYTM+I+ FCK GD  TG +LLKEM+ DGH+P+V T
Sbjct: 361 LREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 58  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWG 114

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  A  +   + + GL P+ V F TL++G
Sbjct: 115 F-YKEILE-CGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNG 172

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 173 YIR------LGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLD 226

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L  D  TY  +I   CK GD K 
Sbjct: 227 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQ 286

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EMR  G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 287 AQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLIS 346

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 347 GLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 385


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 283/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR  L +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA ILET+GT    + V
Sbjct: 9   FRHNLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAXILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + + ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA +L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FCK GD   G +LLKEM+ DG+ P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 169/346 (48%), Gaps = 33/346 (9%)

Query: 129 VYVFNVLMHKLCKEGKIKDA------------QMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +YVF+ L+    + G ++DA            ++ FD   K   H   + +  L+ G  +
Sbjct: 66  IYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYE 125

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            +NL+ G+              +Y ++ L++   KE  +  A+ +   + + GL P+ V 
Sbjct: 126 -ENLECGYP-----------ASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVS 173

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F TL++G+ K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A  
Sbjct: 174 FNTLMNGYIK------LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANV 227

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EM+ +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   C
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD K    L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+
Sbjct: 288 KKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            Y  L+ G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/417 (50%), Positives = 283/417 (67%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HF+  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+G     + V
Sbjct: 15  FRHTLXSYCTMIHFVCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGNQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DA++C+RL R+H F +P   CR +++ +M+     +  GFY E L
Sbjct: 75  FSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+L H+ CKEG I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGF+LKS M  SG+ PDVYTYS LINGLCKE+++D A  L  EM  +GL PN V FTTLI
Sbjct: 195 EGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+ +A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           +REML VGLKPD  TYTM+I+  CK GD   G +LLKEM+ DGH P+V TYN LMNG
Sbjct: 375 MREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 137/269 (50%), Gaps = 9/269 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G    +Y ++ L +  CKE  +  A+ +   + + GL P+ V + TL++G+ +       
Sbjct: 137 GYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR------L 190

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           GD+ E  K+   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G+  + V F
Sbjct: 191 GDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTF 250

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           T LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD      L+ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSM 310

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G C+ G   D
Sbjct: 311 KGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 434 FDKLQSEK---GLVSDYACYTSLVSKSSK 459
            +K+  E    GL  D   YT ++++  K
Sbjct: 371 AEKMMREMLSVGLKPDTGTYTMIINEVCK 399



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 142/309 (45%), Gaps = 45/309 (14%)

Query: 186 LKSVMEGSG-MRPDVYTYSALINGLCKENRLDDA--------------------ELLLH- 223
             +++E  G  R D+Y +S LI    +   L DA                    ++L H 
Sbjct: 58  FAAILETKGNQRSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHL 117

Query: 224 --------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
                         E  E G   +   F  L    CK G      D++ A+ + D +   
Sbjct: 118 MKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEG------DIRVAQSVFDAITKW 171

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P  ++Y  L++G+ + GDL+    ++  M   G+  D   ++ LI+G C+  K+  A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXA 231

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  EML  GL P+  T+T +ID  CKNG       + K+M S   LP + TYN L+ G
Sbjct: 232 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSD 446
           LCK G L  A+ L+D M   G+ PD ITY  L++G CK G+ +   +  K   ++ +  D
Sbjct: 292 LCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 447 YACYTSLVS 455
              YT+L+S
Sbjct: 352 DVAYTALIS 360


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/408 (52%), Positives = 284/408 (69%), Gaps = 30/408 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+H L  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLDSYCTMIHLLCTHQMLSEAKSLIRVVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D GY  S+Y FN+LMH+ CKEG I+ AQ+VF+   K GL  + VSFNTL+NG+ +  +LD
Sbjct: 129 DCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM ++GL PN V FTTLI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
            GHCKN R+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 249 AGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MI+  I LD+VA+TALISG C+ G+ ++AE++
Sbjct: 309 PDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKV 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           LREML VGLKPD  TYTM+I+ FCK GD  TG +LLKEM+ DGH+P+V
Sbjct: 369 LREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSV 416



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 167/337 (49%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K     + 
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CKE  +  A+L+ + + + GL P+ V F TL++G+ 
Sbjct: 123 FYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYI 182

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ +G
Sbjct: 183 R------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKG 236

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI+G C+  +V  A  + ++ML   L PD  TY  +I   CK GD K   
Sbjct: 237 LVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 296

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGL 356

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 357 CQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCK 393


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/414 (51%), Positives = 280/414 (67%), Gaps = 30/414 (7%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDA 64
           TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+I ET GT    J V   
Sbjct: 1   TLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIXETXGTQRSDJYVFSG 60

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y++ GFL DAI+C+RL  +H F +P   CR +++ +M+     +  GFY EIL+ G
Sbjct: 61  LITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECG 120

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGF
Sbjct: 121 YPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 180

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           RLKS M  SG++PDVYTYS LING CKE++ DDA  L  EM  +GL PN V FTTLIDGH
Sbjct: 181 RLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGH 240

Query: 245 CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
           CKNGR+D+A                             GD+K+A  ++DEM   GL PDK
Sbjct: 241 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK 300

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ITYT L+DG CKEGDL+SA +  K MI+    LD V +TALISG C  G+ V+AE+MLRE
Sbjct: 301 ITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLRE 360

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           ML VGLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 361 MLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 9/235 (3%)

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           E+ E G   +   F  L+   CK+G      D++ A+ + D +   GL P  ++Y  L++
Sbjct: 115 EILECGYPASLYFFNILMHRFCKDG------DIRJAQSVFDAITKWGLRPSVVSYNTLMN 168

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G+ + GDL+    ++  M+  G++ D   ++ LI+G C+  K  +A  +  EML  GL P
Sbjct: 169 GYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVP 228

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +   +T +ID  CKNG       + K+M S    P + TYN L+ GLCK G LK A+ L+
Sbjct: 229 NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 288

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           D M   G+ PD ITY  L++G CK G+ +   +  K   ++    D   YT+L+S
Sbjct: 289 DEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALIS 343


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           +R TLH+Y TM+HFL  H+M  +A+ L+ ++VS+KG  S++++FA+ILET+GT +  L V
Sbjct: 9   YRHTLHSYCTMIHFLCTHQMLVEAKSLIRVVVSRKGKDSTSAVFAAILETKGTQISDLYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              LM+ Y++ GF+ DAIQCFRL +KH   +P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY PS+Y FN+LMH+ CKEG+++ AQMVFD   K  L  + VSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  +G++PDVYTYS LINGLCKE+++D+A  +L+EM + GL PN V FTTLI
Sbjct: 189 EGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNG++D+A                             GD+ +AR +V+EM   GL 
Sbjct: 249 DGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE   ++RK MI+  I LD V +TALISG CR G+  +AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD+ TYTM+++ FCK GD KT  +LL+EM+ +G +P V T
Sbjct: 369 LREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 171/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ LM    + G ++DA   F    K   H   V F+T   ++    K +   L  G
Sbjct: 66  LYVFSGLMLAYLESGFVRDAIQCFRLTKK---HKIWVPFDTCRKVLEHLMKLRYFRLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G  P +Y ++ L++  CKE  +  A+++   + +  L P+ V F TL++G
Sbjct: 123 F-YKEILE-CGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M   G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIR------LGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ GKV  A  + ++ML  G  PD  TY  +I   C+ GD   
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L++EM   G  P   TY  L++G CK G L+    L   M+   +  D++TY  L+ 
Sbjct: 295 ARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCK 393


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/410 (51%), Positives = 285/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+   +A+ L+ ++VS+KG  S++++FA+ILET+G     + V
Sbjct: 9   FRHTLHSYCTMIHFLSTHQRILEAKSLIQIVVSRKGKDSASAVFAAILETKGAQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+CFRL RKH F +P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+I+ AQ VFD   K GL  + VSFNTLING+ +  +LD
Sbjct: 129 ECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +GFRLK+ M  SG+ PDVYT + LINGLCKE+++D+A  L +EM ++GL PN V FTTLI
Sbjct: 189 KGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCK+GR+D+A                             GD+K+AR ++ EM   GL 
Sbjct: 249 DGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A ++RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP++ TYTM+I+ FCK GD KT  +LLKEM+ DGH+P V T
Sbjct: 369 LREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 172/335 (51%), Gaps = 19/335 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA   F    K   H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDAIECFRLTRK---HKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TLI+G
Sbjct: 123 F-YKEILE-CGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLING 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + + G +D    +K A      M  +G++PD  T T+L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIRLGDLDKGFRLKTA------MHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML+ G  PD  TY  +I   C+ GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A  L   M++  +  DD+ Y  L+ 
Sbjct: 295 ARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVS 455
           G C+ G   D +K+  E    GL  +   YT +++
Sbjct: 355 GLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIIN 389



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 120/277 (43%), Gaps = 12/277 (4%)

Query: 188 SVMEGSG-MRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +++E  G  R D+Y +S LI    +   L DA E        +   P D     L   H 
Sbjct: 54  AILETKGAQRSDIYVFSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVL--EHL 111

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
              +       K       E+   G       + IL+  FCKEG++  A  +   + K G
Sbjct: 112 MKLKY-----FKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCG 166

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +    V+F  LI+G+ R G + +  R+   M   G+ PD  T T++I+  CK        
Sbjct: 167 LRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEAN 226

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L  EM   G +P   T+  L++G CK G++  A  +   ML  G  PD ITYN L+ G 
Sbjct: 227 ELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGL 286

Query: 426 CKHGN---PEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           C+ G+     D     S KGL  D   YT+L+  S K
Sbjct: 287 CRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCK 323


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/406 (52%), Positives = 280/406 (68%), Gaps = 30/406 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL ++H FR+P   CR +I+ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH  CKEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKSVM+ SG++PDVYT+S LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+   ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+ A+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           LREML VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+  G+ P
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXP 414



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 168/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   +I    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA---IECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++   M  +G+ PD  T+++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------IGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLB 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + R+ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD  Y  L+ 
Sbjct: 295 XXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/417 (51%), Positives = 280/417 (67%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL     S+NTL+NG+ +   LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGL KE+ +DD   L  EM  +GL PN V FTTLI
Sbjct: 195 EGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLI 254

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+ +A  ++DEM   GL 
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLK 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+  +AE+M
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKM 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G + LKEM+ +GH+P V TYN LMNG
Sbjct: 375 LREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLMNG 431



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K +     + 
Sbjct: 72  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWG 128

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CK+  +  A+ +   + + GL P    + TL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYI 188

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G +D    +K A      M  +G+ PD  TY++L++G  KE  ++   ++  EM+ +G
Sbjct: 189 RLGXLDEGFRLKSA------MXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKG 242

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  ++V FT LI G C+ G+V  A  + ++ML   L PD  TY  +    CK GD     
Sbjct: 243 LVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAH 302

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G 
Sbjct: 303 GLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGL 362

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 363 CQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCK 399


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/410 (51%), Positives = 284/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG  S++++FA+ILETRGT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKDSASAVFAAILETRGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C RL ++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECXRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH  CKEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +L+
Sbjct: 129 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++PDVYTYS LINGLCKE+++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLK +  TYTM+I+ FCK GD  TG +L+KEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 170/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA +      K   H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDA-IECXRLTKE--HKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  +   YT ++++  K
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCK 393


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/412 (51%), Positives = 281/412 (68%), Gaps = 30/412 (7%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALM 66
           H+Y TM+HFL  H+  S+A+ L+ ++VS+KG GS++++FA++LET G     + V   L+
Sbjct: 1   HSYCTMIHFLCTHQXLSEAKSLIEVVVSRKGKGSASAVFAAVLETXGNQRSDIYVFSGLI 60

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL+ GY 
Sbjct: 61  TAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYP 120

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGFRL
Sbjct: 121 ASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRL 180

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           KS M  SG++PDVYTYS LINGLCKE+++D A  L  EM  +GL PN V FTTLIDGHCK
Sbjct: 181 KSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCK 240

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           NGR+D+A                             GD+K+A  ++DEM   GL PDK T
Sbjct: 241 NGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFT 300

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+MLREML
Sbjct: 301 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 360

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            VGLKPD  TYTM+++ FCK GD   G +LLKEM+ DGH P+V TYN LMNG
Sbjct: 361 SVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 169/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 53  IYVFSGLITAYLESGFLRDA---IECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 110 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 167

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ 
Sbjct: 168 YIR------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLV 221

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 222 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 281

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 282 AHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 341

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT +V++  K
Sbjct: 342 GLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCK 380


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/409 (51%), Positives = 282/409 (68%), Gaps = 30/409 (7%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VL 62
           R TL +Y TM+HFL  H+M  +A+ L+  +VS+KG  S++++FA+ILET+GT    + V 
Sbjct: 10  RHTLQSYCTMIHFLCTHQMFLEAKSLIQTVVSRKGKDSASAVFAAILETKGTQRSDIYVF 69

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
             L+  Y++ GF+ DAI+CFRL +KH FR+P   CR +++ +M+     +  GFY EIL+
Sbjct: 70  SGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILE 129

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            GY  S+Y FN+LMH+ CKEG+++ AQ VFD   K GL  + VSFNTL+NG+ K  +LDE
Sbjct: 130 CGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           GFRLK+ M  SG++PDVYTYS LINGLCKE+R+D+A  L  EM + GL PN V FTTLID
Sbjct: 190 GFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLID 249

Query: 243 GHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNP 273
           GHCKNGR+D+A                             GD+K+AR ++DEM   GL P
Sbjct: 250 GHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKP 309

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           DKITYT L+DG CKEGDLE+A ++R+ MIK  I LD+V +TALI G C+ G+ V+AE+ML
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKML 369

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           REML+VGLKPDD TYTM+++ FCK GD K    LL+EM+ +G +P V T
Sbjct: 370 REMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 171/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN-----GHCKAKNLDEG 183
           +YVF+ L+    + G I+DA   F    K   H+  V F+T  N        K   L  G
Sbjct: 66  IYVFSGLITAYLESGFIRDAIECFRLTKK---HSFRVPFDTCRNVLEHLMKXKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 F-YKEILE-CGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+ G++  A  + R+ML  G  PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL EM   G  P   TY  L++G CK G L+ A  L + M+   +  DD+ Y  L+ 
Sbjct: 295 ARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIF 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCK 393



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D   F+ LI+ +   G + +A    R   K   +    T   V++   K    K  +   
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFY 124

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           KE+   G+  ++  +N LM+  CK G+++ A  + D +   G+ P  +++N L+ G+ K 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           G+ ++  +L++     G+  D   Y+ L++
Sbjct: 185 GDLDEGFRLKNAMRASGVQPDVYTYSVLIN 214


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/410 (51%), Positives = 283/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TL +Y TM+HFL  H+M  +A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL+++H FR+P   CR +++ +M+     +  GFY E L
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH   KEG+I+ AQ VFD   K  L  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLK+ M+ SG++ DVYTYS LINGLCK +++DDA  L  EM + GL PN V FTTLI
Sbjct: 189 EGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKN R+D+A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKP+  TYTM+I+ FC+ GD  TG +LLKEM+ DG++P+V T
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 19/336 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA   +    +   H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLITAYLESGFLRDAIECYRLIKE---HKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +S+    G    +Y ++ L++   KE  +  A+ +   + +  L P+ V F TL++G
Sbjct: 123 FYEESL--ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K       GD+ E  ++ + M  +G+  D  TY++L++G CK   ++ A ++  EM+ 
Sbjct: 181 YIK------LGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V FT LI G C+  +V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSK 456
           G C+ G   D +K+  E    GL  +   YT ++++
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 45/307 (14%)

Query: 188 SVMEGSG-MRPDVYTYSALINGLCKENRLDDA--------------------ELLLH--- 223
           +++E  G  R D+Y +S LI    +   L DA                    ++L H   
Sbjct: 54  AILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLEHLMK 113

Query: 224 ------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                       E  E G   +   F  L+    K G I +A      + + D +    L
Sbjct: 114 LKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLA------QSVFDAITKWSL 167

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  +++  L++G+ K GDL+    ++  M   G++ D   ++ LI+G C+  K+ +A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANE 227

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EML  GL P+  T+T +ID  CKN        + K+M S    P + TYN L+ GLC
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLC 287

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           K G LK A  L+D M   G+ PD ITY  L++G+CK G+ E   ++ K   ++ +  D  
Sbjct: 288 KKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 449 CYTSLVS 455
            YT+L+S
Sbjct: 348 AYTALIS 354


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/410 (50%), Positives = 284/410 (69%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH Y TM+HFL  H+M  +A+ L+ ++VS+KG  S++++FA+ILET+GT    + V
Sbjct: 9   FRHTLHTYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GF+ DAI+CFRL R+H  R+P   CR +++ +M+     +  GFY EIL
Sbjct: 69  FSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG+I  AQ VFD   K GL  + VSFNTL+NG+ +  +LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +GF+LK+ M  SG++PDVYTYS LINGLCKE+++++A  L +EM ++GL PN V FTTLI
Sbjct: 189 QGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNG++D A                             GD+K+A+ ++DEM   GL 
Sbjct: 249 DGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL+SA ++R+ M+K  I LD+VA+TALISG C+ G+  +AE+M
Sbjct: 309 PDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD+ TYTM+I+ FCK  D KT  +LLKEM+  GH+P V T
Sbjct: 369 LREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 174/339 (51%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L++   + G ++DA    + F     H   V F+T   ++    K K   L  G
Sbjct: 66  IYVFSGLINAYLESGFVRDA---IECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E  G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G
Sbjct: 123 F-YKEILE-CGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNG 180

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ +  K+ + M  +G+ PD  TY++L++G CKE  +  A D+  EM+ 
Sbjct: 181 YIR------LGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLD 234

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ GKV  A    ++ML     PD  TY  +I   CK GD K 
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQ 294

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL EMR  G  P   TY  L++G CK G L +A  L +TM+   +  DD+ Y  L+ 
Sbjct: 295 AQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALIS 354

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 355 GLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D   F+ LI+ +   G V +A    R   +  L+    T   V++   K    K  +   
Sbjct: 65  DIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           KE+   G+  ++  +N LM+  CK G++  A  + D++   G+ P  +++N L+ G+ + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRL 184

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           G+ +   KL++     G+  D   Y+ L++
Sbjct: 185 GDLDQGFKLKNAMHASGVQPDVYTYSVLIN 214


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/410 (51%), Positives = 281/410 (68%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M  +A+ L+ ++VS+KG  S++++FA+ILET+G     + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLPEAKSLIQIVVSRKGKDSASAVFATILETKGAQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+CFRL R++ + +P   CR +++ +M+     +   FY EIL
Sbjct: 69  FSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           +  Y  S+Y FN+LM + CKEG+I+ AQ VFD   K GL  + VSFNTL+NG+ K  +LD
Sbjct: 129 ECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++D+A  L  EM +RGL PN V FTTLI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNG++D+A                             GD+ +A+ + DEM   GL 
Sbjct: 249 DGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDLE+A + RK MIK  I LD+V++TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD  TYT+V+  FCKNGD K G +LLKEM+ DGH+P V T
Sbjct: 369 LREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G+ K       GD+ E
Sbjct: 136 LYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIK------LGDLDE 189

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
             ++   M  +G+ PD  TY++L++G CKE  ++ A  +  EM+ RG+  + V FT LI 
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLID 249

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G C+ GK+  A  + ++ML  G  PD  TY  +I   CK GD      L  EM   G  P
Sbjct: 250 GHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKP 309

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              TY  L++G CK G L+ A      M+   +  DD++Y  L+ G CK G   D +K+ 
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKML 369

Query: 439 SEK---GLVSDYACYT 451
            E    GL  D   YT
Sbjct: 370 REMLSVGLKPDTGTYT 385



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 9/223 (4%)

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F  L+D  CK G I +A      + + D +   GL P  +++  L++G+ K GDL+   
Sbjct: 138 FFNILMDRFCKEGEIRLA------QSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            ++  M   G++ D   ++ LI+G C+  K+ EA ++  EML  GL P+  T+T +ID  
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGH 251

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CKNG       + K+M S G  P   TYN L+ GLCK G L  A  L D M   G+ PD 
Sbjct: 252 CKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDK 311

Query: 416 ITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           ITY  L++G CK G+ E   ++ K   ++ +  D   YT+L+S
Sbjct: 312 ITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALIS 354


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/493 (45%), Positives = 308/493 (62%), Gaps = 36/493 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           FR T  ++ +M H L+AH++   A  LL L+VS+ G  S   L   ++    T  P  ++
Sbjct: 119 FRHTPASFLSMSHLLIAHRLSHLALPLLRLLVSRLGRDSPPRLLPLLVSAASTDDPAPLV 178

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV--TLGFYLEI 120
            A+  VY D G L D      L  +   R+P      L++R     LP+V     FYL +
Sbjct: 179 SAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMNR-----LPSVPEAYAFYLHL 233

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD G  P    FN+LM  + + GK+  A+ VFDE  +RG+  T V+FNTL++G CKA +L
Sbjct: 234 LDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDL 293

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +    L+ +M  +G+ PDVYTY A I GLCK  R+ DA  +  EMCERGL PN V+ TTL
Sbjct: 294 NNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTL 353

Query: 241 IDGHCKNG--------RIDMAG---------------------DMKEARKIVDEMCTNGL 271
           ID HCK G        R +MA                      DMK A  IV+EM  +GL
Sbjct: 354 IDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGL 413

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PDK+TYT L+DG CKEG+L++A+++++EM   G+ LD+V +TALISG  + G+ V+AER
Sbjct: 414 KPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAER 473

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L EM++ GL+PD+ TYTMVID FCKNGD KTGF+ LKEM++ G  P + TYN +MNG C
Sbjct: 474 ILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFC 533

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
             GQ+KNA+MLL+ ML++GV P+DITYNILL+GHCKHG   D ++L+S KG+VSD+  YT
Sbjct: 534 SLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSAKGMVSDFGVYT 593

Query: 452 SLVSKSSKYRQKR 464
           SL+++  K +  +
Sbjct: 594 SLINEFVKKKSAK 606


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/406 (51%), Positives = 278/406 (68%), Gaps = 30/406 (7%)

Query: 14  VHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALMIVYVDL 72
           +HFL  H+M S+A+ LL ++VS+KG GS++++FA+ILET+GT    + V   L+  Y++ 
Sbjct: 1   IHFLCTHQMFSEAKSLLQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITAYLES 60

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           GFL DAI+C+ L RKH   +P   CR +++ +M+     +  GFY EIL+ GY  S+Y F
Sbjct: 61  GFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFF 120

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+LMH+ CK+G I+ AQ VFD   K GL  +AVS+NTL+NG+ +   LDEGFRLKS M  
Sbjct: 121 NILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLA 180

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           SG++PDVYTYS LINGLCKE+++DDA+ L  EM  +GL PN V FTTLIDGHCKNGR+D+
Sbjct: 181 SGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 240

Query: 253 A-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           A                             GD+K+A  ++D+M   GL PDKITYT L+D
Sbjct: 241 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 300

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G CKEG L SA + RK +I+  I LD+V +TALISG C+ G+ V+AE+MLREML VGL P
Sbjct: 301 GCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNP 360

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           D  TYTM+I+ FCK GD   G +LLKEM+ DGH+P+V TYN LMNG
Sbjct: 361 DTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 171/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA   +    K   H   V F+T   ++    K K   L  G
Sbjct: 47  IYVFSGLITAYLESGFLRDAIECYXLTRK---HKLWVPFDTCRKVLEYLMKLKYFKLVWG 103

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 104 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNG 161

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + + G +D    +K A      M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 162 YIRLGVLDEGFRLKSA------MLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLV 215

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 216 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 275

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ +M   G  P   TY  L++G CK G L +A      ++   +  DD+ Y  L+ 
Sbjct: 276 AHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALIS 335

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 336 GLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCK 374


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/410 (50%), Positives = 280/410 (68%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+I+ET+G     + V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAIIETKGNQRSDIYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DA++C+RL R+H F +P   C+ +++ +++     +   FY EIL
Sbjct: 69  FSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEIL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CKEG I+ AQ VFD   K GL  + VS+NTL+NG+ +  +L+
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLN 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGF+LKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 189 EGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             G + +A  ++DEM   GL 
Sbjct: 249 DGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 309 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           +REML  GLKPD  TYTM+I+ FCK GD   G +LLKEM+ DGH P+V T
Sbjct: 369 MREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 165/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA   +    +   H   V F+T   ++    K K  +  + 
Sbjct: 66  IYVFSGLITAYLESGFLRDAVECYRLTRE---HKFWVPFDTCKKMLEHLVKLKYFNLVWA 122

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V + TL++G+ 
Sbjct: 123 FYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  K+   M  +G+ PD  TY++L++G CKE  ++ A ++ +EM+ +G
Sbjct: 183 R------LGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKG 236

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK G      
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAH 296

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ G 
Sbjct: 297 DLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 356

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 357 CQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCK 393


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/417 (50%), Positives = 280/417 (67%), Gaps = 30/417 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS+ ++FA+I ET+GT    + V
Sbjct: 13  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSAXAVFAAIXETKGTQRXDIYV 72

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H  R+P   C+ +++ +M+     +  GF   I 
Sbjct: 73  FSGLITTYLESGFLRDAIECYRLTREHKLRVPFDTCKKVLEHLMKLKYFKLVWGFXXXIX 132

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G       FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +L+
Sbjct: 133 XXGXXXXXXFFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLN 192

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLI
Sbjct: 193 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLI 252

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 253 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 312

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            DKITYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 313 XDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 372

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           LREML VGLKPD  TYTM+I+ FCK GD   G +LLK+M+ +GH P+V TYN LMNG
Sbjct: 373 LREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 162/337 (48%), Gaps = 15/337 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K     + 
Sbjct: 70  IYVFSGLITTYLESGFLRDA---IECYRLTREHKLRVPFDTCKKVLEHLMKLKYFKLVWG 126

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G       ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ 
Sbjct: 127 FXXXIXXXGXXXXXXFFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYI 186

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G
Sbjct: 187 R------LGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 240

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K   
Sbjct: 241 LXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 300

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ EM   G      TY  L++G CK G L  A      M+   +  DD+ Y  L+ G 
Sbjct: 301 DLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGL 360

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 361 CQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCK 397


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 275/395 (69%), Gaps = 30/395 (7%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALM 66
           H+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V   L+
Sbjct: 1   HSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLI 60

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL+ GY 
Sbjct: 61  TXYLESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGFYKEILECGYP 120

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            S+Y FN+LMH+ CKEG I+ AQ VFD   K GL  + VSFNTL+NG+ +  +LDEGFRL
Sbjct: 121 ASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRL 180

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K+ M  SG++PDVYTYS LINGLCKE+++DDA  L  EM ++GL PN V FTTLIDGHCK
Sbjct: 181 KNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCK 240

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           NGR+D+A                             GD+K+A  ++DEM   GL PDKIT
Sbjct: 241 NGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 300

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L+DG CKEGD+E+A + +K MI+  I LD+V +TALISG C+ G+ V+AE+MLREML
Sbjct: 301 YTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREML 360

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
            VGLKP+  TYTM+I+ FCK GD  TG +LLKEM+
Sbjct: 361 SVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEMQ 395



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 166/336 (49%), Gaps = 13/336 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK--NLDEGFRL 186
           +YVF+ L+    + G ++DA   +    +            ++    K K   L  GF  
Sbjct: 53  IYVFSGLITXYLESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGF-Y 111

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K ++E  G    +Y ++ L++  CKE  +  A+ +   + + GL P+ V F TL++G+ +
Sbjct: 112 KEILE-CGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIR 170

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GD+ E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G+
Sbjct: 171 ------LGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGL 224

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +    CK GD K    
Sbjct: 225 VPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHD 284

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L+ EM   G  P   TY  L++G CK G ++ A      M+   +  DD+ Y  L+ G C
Sbjct: 285 LIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLC 344

Query: 427 KHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           + G   D +K+  E    GL  +   YT ++++  K
Sbjct: 345 QEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCK 380


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/483 (45%), Positives = 302/483 (62%), Gaps = 36/483 (7%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDL 72
           M H L+AH++   A  LL L+VS+ G  S   L   ++    T  P  ++ A+  VY D 
Sbjct: 1   MSHLLIAHRLSHLALPLLRLLVSRLGRDSPPRLLPLLVSAASTDDPAPLVSAVAKVYADE 60

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV--TLGFYLEILDYGYSPSVY 130
           G L D      L  +   R+P      L++R     LP+V     FYL +LD G  P   
Sbjct: 61  GLLPDGCSLLLLALRRGIRVPMPAWSDLMNR-----LPSVPEAYAFYLHLLDAGVPPEAR 115

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            FN+LM  + + GK+  A+ VFDE  +RG+  T V+FNTL++G CKA +L+    L+ +M
Sbjct: 116 QFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLM 175

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG-- 248
             +G+ PDVYTY A I GLCK  R+ DA  +  EMCERGL PN V+ TTLID HCK G  
Sbjct: 176 AKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDV 235

Query: 249 ------RIDMAG---------------------DMKEARKIVDEMCTNGLNPDKITYTIL 281
                 R +MA                      DMK A  IV+EM  +GL PDK+TYT L
Sbjct: 236 TAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 295

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DG CKEG+L++A+++++EM   G+ LD+V +TALISG  + G+ V+AER+L EM++ GL
Sbjct: 296 IDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGL 355

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           +PD+ TYTMVID FCKNGD KTGF+ LKEM++ G  P + TYN +MNG C  GQ+KNA+M
Sbjct: 356 QPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADM 415

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
           LL+ ML++GV P+DITYNILL+GHCKHG   D ++L+S KG+VSD+  YTSL+++  K +
Sbjct: 416 LLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSAKGMVSDFGVYTSLINEFVKKK 475

Query: 462 QKR 464
             +
Sbjct: 476 SAK 478


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/394 (52%), Positives = 271/394 (68%), Gaps = 30/394 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDAL 65
           LH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA ILET+GT    + V   L
Sbjct: 1   LHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAVILETKGTQRSDIYVFSGL 60

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL+ GY
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILESGY 120

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
             S+Y FN+LMH+ CKE  I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGFR
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           LKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM  +GL PN V FTTLIDGHC
Sbjct: 181 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           KNGR+D+A                             GD+K+A  ++DEM   GL PDKI
Sbjct: 241 KNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 300

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L+DG CKEGDL++A + RK MI+  I LD+VA+TALISG C+ G+ V+AE+MLREM
Sbjct: 301 TYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 360

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           L VGLKPD  TYTM+I+ FCK GD   G +LLKE
Sbjct: 361 LSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 394



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 172/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 54  IYVFSGLITAYLESGFLRDA---IECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 110

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K ++E SG    +Y ++ L++  CKE  +  A+ +   + + GL P+ V + TL++G
Sbjct: 111 F-YKEILE-SGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 168

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 169 YIR------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 222

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 223 KGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 282

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY AL++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 283 AHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 342

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 343 GLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 381


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/410 (50%), Positives = 276/410 (67%), Gaps = 30/410 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           +R TLH+Y TM+H L  H+M  +A+ L+ ++VS+KG  S++ +F +ILET+GT +    V
Sbjct: 9   YRHTLHSYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQISDFYV 68

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              LMI Y++ GF+ DA+QCFRL ++H  R+P   CR +++ +M      +   FY E+L
Sbjct: 69  FSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVL 128

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LM + CKEG+++ AQ VFD   K GL  + VSFNTLING+ K  +LD
Sbjct: 129 ECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLD 188

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG +PDVYTYS LINGLCKE +LD+A  L +EM + GL PN V FTTLI
Sbjct: 189 EGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
            GHCKN ++D+A                             G++K+   ++DEM  NGL 
Sbjct: 249 HGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLK 308

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKI+YT L+DG CKEGDLE AL++R +MI+  I LD+VA+TALIS  CR G+  +AE+M
Sbjct: 309 PDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKM 368

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           LREML VGLKPD+ TYTM+I+ FCK  D+KT  +LL+EM+ DG +P V T
Sbjct: 369 LREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 175/347 (50%), Gaps = 27/347 (7%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA--KNLDEG--FR 185
           YVF+ LM    + G ++DA   F    K+  H   V F+T     C+   ++L E   F+
Sbjct: 67  YVFSGLMIAYLESGFVRDAVQCF-RLTKQ--HKIRVPFDT-----CRKVLEHLMEFRYFK 118

Query: 186 L-----KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           L     K V+E  G    +Y ++ L+   CKE  +  A+ +   + + GL P+ V F TL
Sbjct: 119 LVWDFYKEVLE-CGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTL 177

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I+G+ K       GD+ E  ++   M  +G  PD  TY+IL++G CKEG L+ A ++  E
Sbjct: 178 INGYIK------LGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNE 231

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+  G+  + V FT LI G C+  KV  A  + ++ML  GL PD  TY  +I   CK G+
Sbjct: 232 MLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGE 291

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            K    L+ EM  +G  P   +Y  L++G CK G L+ A  L + M+   +  DD+ Y  
Sbjct: 292 LKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTA 351

Query: 421 LLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSKYRQKR 464
           L+   C+ G   D +K+  E    GL  D   YT ++++  K R  +
Sbjct: 352 LISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSK 398


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/409 (50%), Positives = 274/409 (66%), Gaps = 30/409 (7%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VL 62
           R TLH+Y TM+H L  H+M  +A+ L+ ++VS+KG  S++ +F +ILET+GT      V 
Sbjct: 10  RHTLHSYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQRSDFYVF 69

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
             LMI Y++ GF+ DA+QCFRL ++H  R+P   CR +++ +M      +   FY E+L+
Sbjct: 70  SGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLE 129

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            GY  S+Y FN+LM + CKEG+++ AQ VFD   K GL  + VSFNTLING+ K  +LDE
Sbjct: 130 CGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDE 189

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           GFRLKS M  SG +PDVYTYS LINGLCKE +LD+A  L +EM + GL PN V FTTLI 
Sbjct: 190 GFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIH 249

Query: 243 GHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNP 273
           GHCKN ++D+A                             G++K+   ++DEM  NGL P
Sbjct: 250 GHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKP 309

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           DKI+YT L+DG CKEGDLE AL++R +MI+  I LD+VA+TALIS  CR G+  +AE+ML
Sbjct: 310 DKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKML 369

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           REML VGLKPD+ TYTM+I+ FCK  D+KT  +LL+EM+ DG LP V T
Sbjct: 370 REMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 175/347 (50%), Gaps = 27/347 (7%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA--KNLDEG--FR 185
           YVF+ LM    + G ++DA   F    K+  H   V F+T     C+   ++L E   F+
Sbjct: 67  YVFSGLMIAYLESGFVRDAVQCF-RLTKQ--HKIRVPFDT-----CRKVLEHLMEFRYFK 118

Query: 186 L-----KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           L     K V+E  G    +Y ++ L+   CKE  +  A+ +   + + GL P+ V F TL
Sbjct: 119 LVWDFYKEVLE-CGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTL 177

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I+G+ K       GD+ E  ++   M  +G  PD  TY+IL++G CKEG L+ A ++  E
Sbjct: 178 INGYIK------LGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNE 231

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+  G+  + V FT LI G C+  KV  A  + ++ML  GL PD  TY  +I   CK G+
Sbjct: 232 MLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGE 291

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            K    L+ EM  +G  P   +Y  L++G CK G L+ A  L + M+   +  DD+ Y  
Sbjct: 292 LKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTA 351

Query: 421 LLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSKYRQKR 464
           L+   C+ G   D +K+  E    GL  D   YT ++++  K R  +
Sbjct: 352 LISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSK 398


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/397 (50%), Positives = 273/397 (68%), Gaps = 30/397 (7%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDA 64
           TL +Y TM+H L  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V   
Sbjct: 1   TLDSYCTMIHLLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSG 60

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y++ GFL DA +C+RL R+H F +P   CR +++ +M+     +  GFY EIL+ G
Sbjct: 61  LITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECG 120

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y  S+Y FN+LMH+ CKEG I  AQ VF+   K GL  + VSFNTL+NG+ +  ++DEGF
Sbjct: 121 YPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGF 180

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           RLK+ M  SG++PDVYTYS LINGLCKE+++DDA  +  EM ++GL PN V FTTLIDGH
Sbjct: 181 RLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGH 240

Query: 245 CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
           CKNGR+D+A                             GD+K+A  ++DEM   GL PDK
Sbjct: 241 CKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 300

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ITYT L+DG CKEGDLE+A + RK MI+  I LD+VA+TALISG C+  + ++AE++LRE
Sbjct: 301 ITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLRE 360

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           ML VGLKPD  TYTM+I+ FCK GD  TG +LLKEM+
Sbjct: 361 MLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 172/339 (50%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA   +    +   H   V F+T   ++    K K   L  G
Sbjct: 55  IYVFSGLITAYLESGFLRDAXECYRLTRE---HKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CKE  +  A+ + + + + GL P+ V F TL++G
Sbjct: 112 F-YEEILE-CGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNG 169

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GDM E  ++ + M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 170 YIR------LGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLD 223

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 224 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQ 283

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L+ A      M+   +  DD+ Y  L+ 
Sbjct: 284 AHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALIS 343

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+     D +K+  E    GL  D   YT ++++  K
Sbjct: 344 GLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCK 382


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/399 (50%), Positives = 268/399 (67%), Gaps = 30/399 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA++LET+G     + V
Sbjct: 11  FRHTLHSYCTMIHFLCTHQMLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQRSDIYV 70

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL  +H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 71  FSGLITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 130

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 131 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 190

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG  PDVYTYS LINGLCKE+++D A  L  EM  +GL PN V FTTLI
Sbjct: 191 EGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLI 250

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             GD+K+A  ++DEM   GL 
Sbjct: 251 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLK 310

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK TYT L+DG CKEGDL++A   RK MI+  I LD+VA+TALISG C+ G+ V+AE+M
Sbjct: 311 PDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 370

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           LREML VGL PD  TYTM+I+ FCK GD   G +LLKEM
Sbjct: 371 LREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 19/339 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAK--NLDEG 183
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K   L  G
Sbjct: 68  IYVFSGLITAYLESGFLRDA---IECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWG 124

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  + ++E  G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G
Sbjct: 125 F-YEEILE-CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 182

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +       GD+ E  ++   M  +G  PD  TY++L++G CKE  ++ A ++  EM+ 
Sbjct: 183 YIR------LGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLV 236

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK GD K 
Sbjct: 237 KGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 296

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM   G  P   TY  L++G CK G L  A      M+   +  DD+ Y  L+ 
Sbjct: 297 AHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALIS 356

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           G C+ G   D +K+  E    GL  D   YT ++++  K
Sbjct: 357 GLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCK 395


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/494 (44%), Positives = 307/494 (62%), Gaps = 37/494 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           FR T  ++ +M H L+AH++   A  LL L+VS+ G  S   L   +L    T  P  ++
Sbjct: 120 FRHTPASFLSMSHLLIAHRLPHLALPLLRLLVSRLGRDSPPRLLPLLLSAVSTDDPAPLV 179

Query: 63  DALMIVYVDLGFLDDAIQCFRLLR-KHYFRIPARGCRCLIDRMMRTNLPTV--TLGFYLE 119
            A+   Y D G L D      LL  +   R+P      L++R     LP+V     FYL+
Sbjct: 180 SAVAKAYADEGLLPDGCSLLLLLALRRGVRVPLPAWSDLMNR-----LPSVPEAYAFYLQ 234

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +LD G  P    FN+LM  + + GK+  A+ +FDE  +RG+  T V+FNTL++G CKA +
Sbjct: 235 LLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASD 294

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+    L+ +M  +G+ PDVYTY A + GLCK  R+ DA  +  EM ERG+ PN V+FTT
Sbjct: 295 LNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTT 354

Query: 240 LIDGHCKNGRI--------DMAG---------------------DMKEARKIVDEMCTNG 270
           LID HCK G +        +MA                      D+K A  IV+EM  NG
Sbjct: 355 LIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNG 414

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L PDK+TYT L+DGFCKEG+L+ A+++++EM   G+ LD V +T LISG  + G+ V++E
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSE 474

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           R+L EM++ GL+PD+ TYTMVID FCKN D KTGF+LLKEM++ G  P V TYN +MNG 
Sbjct: 475 RILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGF 534

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACY 450
           C  GQ+KNA+MLL+ ML++GV PDDITYNILL+GHCKHG   D ++L+S KG+VSD+  Y
Sbjct: 535 CILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEELKSAKGMVSDFGLY 594

Query: 451 TSLVSKSSKYRQKR 464
           TSL+++  K +  +
Sbjct: 595 TSLINEFVKKKSTK 608


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/495 (43%), Positives = 290/495 (58%), Gaps = 38/495 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL--PGL 60
           FR T  ++ +M   L+ H++   A  LL L+ S+ G  S   +   +L         P  
Sbjct: 115 FRHTPASFLSMACHLLRHRLPHLAHPLLRLLASRLGRSSPPRVLPLLLSAAAAAPGDPAS 174

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV--TLGFYL 118
           +L AL   Y + G L DA     L  +   R+    C  L+ R      PT      FYL
Sbjct: 175 LLSALSSAYAEEGLLPDACTLVLLALRRGIRLEPTSCTGLMSR-----FPTAPEACAFYL 229

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++LD G  P   +FNVLM  L + G++  AQ VFDE   RG+  T VSFNT+I+G C+A 
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +LD    L   M  +G+ PDVYTY ALI GLC+  R++DA  +  +MC RG+ PN V+FT
Sbjct: 290 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 349

Query: 239 TLIDGHCKNGRIDM-----------------------------AGDMKEARKIVDEMCTN 269
            LID HCK G  +                              A D+K A  IV EM + 
Sbjct: 350 ILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSA 409

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD +TYT L+DG+CKE +L+ A++I++ M+  G+ LD V +TALISG  + G+  +A
Sbjct: 410 GLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADA 469

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           ER+L EM++ GL+PD+ TYTMVID FC+ GD KTG RLLKEM++ G  P V TYN +MNG
Sbjct: 470 ERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNG 529

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYAC 449
            CK GQ+KNA+MLL+ M+++GV PDDITYNILL+GHCKHG   D ++L+S KG V D   
Sbjct: 530 FCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVPDLGV 589

Query: 450 YTSLVSKSSKYRQKR 464
           YTS+V +  K +  +
Sbjct: 590 YTSIVGEIVKKKTTK 604


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/372 (50%), Positives = 257/372 (69%), Gaps = 30/372 (8%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 7   FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 66

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H F +P   CR +++ +M+     +  GFY EIL
Sbjct: 67  FSGLITAYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGFYKEIL 126

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LM + CKEG I+ AQ+V +   K GL  + VSFNTLING+ +  +LD
Sbjct: 127 ECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLD 186

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++DDA  L  EM ++G+ PN V FTTLI
Sbjct: 187 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLI 246

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGHCKNGR+D+A                             G++K+A  ++DEM   GL 
Sbjct: 247 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLK 306

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDKITYT L+DG CKEGD+E+A + +K MI+  I LD+V +TALISG C+ G+ V+AE+M
Sbjct: 307 PDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 366

Query: 333 LREMLKVGLKPD 344
           LREML VGLKP+
Sbjct: 367 LREMLSVGLKPN 378



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 160/314 (50%), Gaps = 10/314 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK--NLDEGFRL 186
           +YVF+ L+    + G ++DA   +    +        +   ++    K K   L  GF  
Sbjct: 64  IYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGF-Y 122

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K ++E  G    +Y ++ L+   CKE  +  A+L+L+ + + GL P+ V F TLI+G+ +
Sbjct: 123 KEILE-CGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIR 181

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GD+ E  ++   M  +G+ PD  TY++L++G CKE  ++ A ++  EM+ +G+
Sbjct: 182 ------LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGM 235

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V FT LI G C+ G+V  A  + ++ML   L PD  TY  +I   CK G+ K    
Sbjct: 236 VPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHD 295

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L+ EM  +G  P   TY  L++G CK G ++ A      M+   +  DD+ Y  L+ G C
Sbjct: 296 LIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLC 355

Query: 427 KHGNPEDFDKLQSE 440
           + G   D +K+  E
Sbjct: 356 QEGRSVDAEKMLRE 369



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 148/307 (48%), Gaps = 45/307 (14%)

Query: 188 SVMEGSG-MRPDVYTYSALINGLCKENRLDDA--------------------ELLLH--- 223
           +++E  G  R D+Y +S LI    +   L DA                    ++L H   
Sbjct: 52  AILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMK 111

Query: 224 ------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                       E+ E G   +   F  L+   CK G      D++ A+ +++ +   GL
Sbjct: 112 LKYFKLVWGFYKEILECGYPASLYFFNILMQRFCKEG------DIRVAQLVLNAITKWGL 165

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  +++  L++G+ + GDL+    ++  M   G++ D   ++ LI+G C+  K+ +A  
Sbjct: 166 RPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANE 225

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EML  G+ P+  T+T +ID  CKNG       + K+M S    P + TYN L+ GLC
Sbjct: 226 LFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 285

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           K G+LK A+ L+D M   G+ PD ITY  L++G CK G+ E   +  K   ++ +  D  
Sbjct: 286 KKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDV 345

Query: 449 CYTSLVS 455
            YT+L+S
Sbjct: 346 VYTALIS 352


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 275/436 (63%), Gaps = 33/436 (7%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           P  ++  L   Y D G L DA     L  +    +PA  C  L+ R+  T        FY
Sbjct: 118 PAPLVSELAAAYADEGLLPDACSLVLLALRRGISLPAPVCSGLMSRLPST---PEAYTFY 174

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           L++LD G +P   +FNVLM    + G++  A+ VFDE  +R +  T V+FNTLI+G C+A
Sbjct: 175 LQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEM-RRSVQPTVVTFNTLISGMCRA 233

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           ++LD    L   M   G++PDVYTY ALI G C+  R+++A  + +EM + G+ PN V+F
Sbjct: 234 RDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVF 293

Query: 238 TTLIDGHCKNGRIDM-----------------------------AGDMKEARKIVDEMCT 268
           TTLID HCK G ++                              A ++K A  IV+EM  
Sbjct: 294 TTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKN 353

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL PDK+TYT L+DG CK+G L+ A+DI+++M ++ + LD V +TALISG  + G+ V+
Sbjct: 354 AGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVD 413

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           AER+LREM++  L+PD+ TYTMVID FC+ GD KTGF+LLKEM++ G  P V TYN +MN
Sbjct: 414 AERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMN 473

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA 448
           GLCK GQ+KNA+MLL  ML++GV PDDITYNILL+G CKHG   + ++L+S KG+V D+A
Sbjct: 474 GLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELESSKGMVPDFA 533

Query: 449 CYTSLVSKSSKYRQKR 464
            YTSL+S+ +K +  +
Sbjct: 534 VYTSLISELAKKKPAK 549


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/485 (43%), Positives = 284/485 (58%), Gaps = 38/485 (7%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL--PGLVLDALMIVYV 70
           M   L+ H++   A  LL L+ S+ G  S   +   +L         P  +L AL   Y 
Sbjct: 1   MACHLLRHRLPHLAHPLLRLLASRLGRSSPPRVLPLLLSAAAAAPGDPASLLSALSSAYA 60

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV--TLGFYLEILDYGYSPS 128
           + G L DA     L  +   R+    C  L+ R      PT      FYL++LD G  P 
Sbjct: 61  EEGLLPDACTLVLLALRRGIRLEPTSCTGLMSR-----FPTAPEACAFYLQLLDAGLPPE 115

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
             +FNVLM  L + G++  AQ VFDE   RG+  T VSFNT+I+G C+A +LD    L  
Sbjct: 116 AKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHR 175

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +G+ PDVYTY ALI GLC+  R++DA  +  +MC RG+ PN V+FT LID HCK G
Sbjct: 176 RMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKG 235

Query: 249 RIDM-----------------------------AGDMKEARKIVDEMCTNGLNPDKITYT 279
             +                              A D+K A  IV EM + GL PD +TYT
Sbjct: 236 DAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYT 295

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG+CKE +L+ A++I++ M+  G+ LD V +TALISG  + G+  +AER+L EM++ 
Sbjct: 296 TLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 355

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL+PD+ TYTMVID FC+ GD KTG RLLKEM++ G  P V TYN +MNG CK GQ+KNA
Sbjct: 356 GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA 415

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           +MLL+ M+++GV PDDITYNILL+GHCKHG   D ++L+S KG V D   YTS+V +  K
Sbjct: 416 DMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVPDLGVYTSIVGEIVK 475

Query: 460 YRQKR 464
            +  +
Sbjct: 476 KKTTK 480


>gi|255583549|ref|XP_002532531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527743|gb|EEF29847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 212

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 154/211 (72%), Positives = 176/211 (83%), Gaps = 3/211 (1%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           M+EARK+ DEM      PDKITYT L+DG+CKEGDLESAL+IR  MIK G+ELD VAFTA
Sbjct: 1   MREARKLADEMNERCQKPDKITYTTLIDGYCKEGDLESALEIRNIMIKEGVELDIVAFTA 60

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +ISG C+ GKV++AER LREMLK G KPDDATYTMV+D FCK GD KTGF+LLKEM+SDG
Sbjct: 61  IISGLCKEGKVIDAERALREMLKAGFKPDDATYTMVMDGFCKKGDMKTGFKLLKEMQSDG 120

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
           H+P V TYN LMNG CK  Q+KNANMLLD M++LGVVPDDITYNILLEGHCKHGN +DF 
Sbjct: 121 HVPGVVTYNVLMNGYCKQSQMKNANMLLDAMMNLGVVPDDITYNILLEGHCKHGNLQDFH 180

Query: 436 KLQSEKGLVSDYACYTSL---VSKSSKYRQK 463
           KLQSEKG+V+DYA Y SL   +S+SSK RQK
Sbjct: 181 KLQSEKGVVADYASYKSLLNELSRSSKDRQK 211



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 123/209 (58%), Gaps = 9/209 (4%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           +++A+ + DE  +R      +++ TLI+G+CK  +L+    ++++M   G+  D+  ++A
Sbjct: 1   MREARKLADEMNERCQKPDKITYTTLIDGYCKEGDLESALEIRNIMIKEGVELDIVAFTA 60

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           +I+GLCKE ++ DAE  L EM + G  P+D  +T ++DG CK       GDMK   K++ 
Sbjct: 61  IISGLCKEGKVIDAERALREMLKAGFKPDDATYTMVMDGFCKK------GDMKTGFKLLK 114

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM ++G  P  +TY +L++G+CK+  +++A  +   M+  G+  D++ +  L+ G C+ G
Sbjct: 115 EMQSDGHVPGVVTYNVLMNGYCKQSQMKNANMLLDAMMNLGVVPDDITYNILLEGHCKHG 174

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVID 353
            + +  ++  E    G+  D A+Y  +++
Sbjct: 175 NLQDFHKLQSEK---GVVADYASYKSLLN 200



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +  L+   CKEG ++ A  + +   K G+    V+F  +I+G CK   + +  R 
Sbjct: 18  PDKITYTTLIDGYCKEGDLESALEIRNIMIKEGVELDIVAFTAIISGLCKEGKVIDAERA 77

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  +G +PD  TY+ +++G CK+  +     LL EM   G  P  V +  L++G+CK
Sbjct: 78  LREMLKAGFKPDDATYTMVMDGFCKKGDMKTGFKLLKEMQSDGHVPGVVTYNVLMNGYCK 137

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             +      MK A  ++D M   G+ PD ITY ILL+G CK G+L+   D  K   ++G+
Sbjct: 138 QSQ------MKNANMLLDAMMNLGVVPDDITYNILLEGHCKHGNLQ---DFHKLQSEKGV 188

Query: 307 ELDNVAFTALISGFCRGGK 325
             D  ++ +L++   R  K
Sbjct: 189 VADYASYKSLLNELSRSSK 207



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 73/127 (57%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G    +  F  ++  LCKEGK+ DA+    E  K G      ++  +++G CK  ++  G
Sbjct: 50  GVELDIVAFTAIISGLCKEGKVIDAERALREMLKAGFKPDDATYTMVMDGFCKKGDMKTG 109

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+L   M+  G  P V TY+ L+NG CK++++ +A +LL  M   G+ P+D+ +  L++G
Sbjct: 110 FKLLKEMQSDGHVPGVVTYNVLMNGYCKQSQMKNANMLLDAMMNLGVVPDDITYNILLEG 169

Query: 244 HCKNGRI 250
           HCK+G +
Sbjct: 170 HCKHGNL 176



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G+ P    + ++M   CK+G +K    +  E    G     V++N L+NG+CK  
Sbjct: 80  EMLKAGFKPDDATYTMVMDGFCKKGDMKTGFKLLKEMQSDGHVPGVVTYNVLMNGYCKQS 139

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +     L   M   G+ PD  TY+ L+ G CK   L D   L     E+G+  +   + 
Sbjct: 140 QMKNANMLLDAMMNLGVVPDDITYNILLEGHCKHGNLQDFHKL---QSEKGVVADYASYK 196

Query: 239 TLID 242
           +L++
Sbjct: 197 SLLN 200


>gi|410109907|gb|AFV61033.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           trifolia]
          Length = 250

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/249 (52%), Positives = 180/249 (72%), Gaps = 1/249 (0%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALMI 67
           +Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILETRGT    + V   L+ 
Sbjct: 1   SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQRSDIYVFSGLIT 60

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            Y++ GFL DAI+C+RL  +H F +P   CR +++ +M+     +  GFY EIL+ GY  
Sbjct: 61  AYLESGFLRDAIECYRLTTEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 120

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LDEGFRLK
Sbjct: 121 SLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 180

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S M  SG++PDVYTYS LING CKE+++DDA  L  EM  +GL PN V FTTLIDGHCKN
Sbjct: 181 SAMLASGVQPDVYTYSVLINGFCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN 240

Query: 248 GRIDMAGDM 256
           GR+D+A ++
Sbjct: 241 GRVDLAMEI 249



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 42/256 (16%)

Query: 201 TYSALINGLCKENRLDDAELLLHEMCER-----------------GLTPNDV-IFTTLID 242
           +Y  +I+ LC    L +A+ L+  +  R                 G   +D+ +F+ LI 
Sbjct: 1   SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQRSDIYVFSGLIT 60

Query: 243 GHCKNGRIDMAGDMKEARKIVDE--------MCTNGL-NPDKITYTILLDGFCKEGDLES 293
            + ++G +    D  E  ++  E         C   L +  K+ Y  L+ GF        
Sbjct: 61  AYLESGFLR---DAIECYRLTTEHKFWVPFDTCRKVLEHLMKLKYFKLVWGF-------- 109

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
                +E+++ G       F  L+  FC+ G +  A+ +   + K GL+P   +Y  +++
Sbjct: 110 ----YEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMN 165

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            + + GD   GFRL   M + G  P V TY+ L+NG CK  ++ +AN L D ML  G+VP
Sbjct: 166 GYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGFCKESKMDDANELFDEMLVKGLVP 225

Query: 414 DDITYNILLEGHCKHG 429
           + +T+  L++GHCK+G
Sbjct: 226 NGVTFTTLIDGHCKNG 241



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 103/201 (51%), Gaps = 12/201 (5%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---LINGHCKAKNLDEGFR 185
           +YVF+ L+    + G ++DA    + +     H   V F+T   ++    K K     + 
Sbjct: 52  IYVFSGLITAYLESGFLRDA---IECYRLTTEHKFWVPFDTCRKVLEHLMKLKYFKLVWG 108

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               +   G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ 
Sbjct: 109 FYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 168

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ E  ++   M  +G+ PD  TY++L++GFCKE  ++ A ++  EM+ +G
Sbjct: 169 R------LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGFCKESKMDDANELFDEMLVKG 222

Query: 306 IELDNVAFTALISGFCRGGKV 326
           +  + V FT LI G C+ G+V
Sbjct: 223 LVPNGVTFTTLIDGHCKNGRV 243



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 9/216 (4%)

Query: 186 LKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDG 243
             +++E  G  R D+Y +S LI    +   L DA        E +   P D     L   
Sbjct: 38  FAAILETRGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTTEHKFWVPFDTCRKVL--E 95

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           H    +       K      +E+   G       + IL+  FCK+GD+  A  +   + K
Sbjct: 96  HLMKLKY-----FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITK 150

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+    V++  L++G+ R G + E  R+   ML  G++PD  TY+++I+ FCK      
Sbjct: 151 WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGFCKESKMDD 210

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              L  EM   G +P   T+  L++G CK+G++  A
Sbjct: 211 ANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 246



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 304 RGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           RG +  ++  F+ LI+ +   G + +A    R   +        T   V++   K    K
Sbjct: 45  RGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTTEHKFWVPFDTCRKVLEHLMKLKYFK 104

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             +   +E+   G+  ++  +N LM+  CK G ++ A  + D +   G+ P  ++YN L+
Sbjct: 105 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLM 164

Query: 423 EGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
            G+ + G+ ++  +L+S     G+  D   Y+ L++
Sbjct: 165 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 200


>gi|255660850|gb|ACU25594.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 406

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 143/320 (44%), Positives = 189/320 (59%), Gaps = 29/320 (9%)

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           +P   CR +++ +M+     +  GFY EIL+ GY  S+Y FN+LMH+ CKEG+I+ AQ V
Sbjct: 87  VPFDTCRKVLZHLMKLKYFKLVWGFYKEILECGYPASIYFFNILMHRFCKEGEIRLAQSV 146

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           FD   K  L  +               +LD GF L + M  SG+ PDVYTY+ LINGLCK
Sbjct: 147 FDAITKCXLRPSXXXXXXXXXXXXXLGDLDXGFTLXTAMHASGVHPDVYTYTVLINGLCK 206

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------ 253
           E ++D    L +EM ++GL PN V FTTLIDGHCK+GR+D+A                  
Sbjct: 207 EXKMDXXNELFNEMLDKGLVPNGVXFTTLIDGHCKSGRVDLALKIYKQMLSXXYSPDLIT 266

Query: 254 -----------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
                      GD K+ R ++ E               L+DG CKEGDLE+A ++RK MI
Sbjct: 267 YNTLIYGLXRKGDXKQXRDLIXEXXXXXXXXXXXXXXTLIDGSCKEGDLETAFELRKXMI 326

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +  I LD+VA+TALISG C+ G   +AE+MLREML V L P++ TYTM+I+ FCK GD K
Sbjct: 327 EESIXLDDVAYTALISGLCQEGXAXDAEKMLREMLSVXLXPENGTYTMIINXFCKQGDVK 386

Query: 363 TGFRLLKEMRSDGHLPAVET 382
           T  +LLKEM+ DGH+P V T
Sbjct: 387 TXSKLLKEMQRDGHVPCVVT 406



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 7/254 (2%)

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K ++E  G    +Y ++ L++  CKE  +  A+ +   + +  L P+             
Sbjct: 113 KEILE-CGYPASIYFFNILMHRFCKEGEIRLAQSVFDAITKCXLRPSXXXXXXXXXXXXX 171

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G +D    +  A      M  +G++PD  TYT+L++G CKE  ++   ++  EM+ +G+
Sbjct: 172 LGDLDXGFTLXTA------MHASGVHPDVYTYTVLINGLCKEXKMDXXNELFNEMLDKGL 225

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V FT LI G C+ G+V  A ++ ++ML     PD  TY  +I    + GD K    
Sbjct: 226 VPNGVXFTTLIDGHCKSGRVDLALKIYKQMLSXXYSPDLITYNTLIYGLXRKGDXKQXRD 285

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L+ E               L++G CK G L+ A  L   M++  +  DD+ Y  L+ G C
Sbjct: 286 LIXEXXXXXXXXXXXXXXTLIDGSCKEGDLETAFELRKXMIEESIXLDDVAYTALISGLC 345

Query: 427 KHGNPEDFDKLQSE 440
           + G   D +K+  E
Sbjct: 346 QEGXAXDAEKMLRE 359


>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           diamantinensis]
          Length = 284

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 138/287 (48%), Positives = 190/287 (66%), Gaps = 7/287 (2%)

Query: 44  SLFASILETRGTHLPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           ++FA+ILET+GT    + V   L+  Y++ GF  DAI+C+RL R+H   +P   CR +++
Sbjct: 1   AVFAAILETKGTQRSDIYVFSGLITAYLESGFXHDAIECYRLTREHKLWVPFDTCRKVLE 60

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
            +M+     +  GFY EIL+ GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  
Sbjct: 61  HLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP 120

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + VS+NTL+NG+ +  +LDEGFRLKS M  SG++PDVY+YS LINGLCKE+++DDA  L 
Sbjct: 121 SVVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELF 180

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            EM  +GL PN V FTTLIDGHCK GR+D+      A +I   M +  L PD ITY  L+
Sbjct: 181 DEMLVKGLAPNGVTFTTLIDGHCKKGRVDL------AMEIYKRMLSQSLLPDLITYNTLI 234

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            G CK+GDL+ A D+  EM  +G++ D + +T LI G C+ G +  A
Sbjct: 235 YGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLIDGCCKEGNLDTA 281



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 114/208 (54%), Gaps = 6/208 (2%)

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            E+ E G   +   F  L+   CK+G      D++ A+ + D +   GL P  ++Y  L+
Sbjct: 76  EEILECGYPASLYFFNILMHRFCKDG------DIRVAQSVFDAITKWGLRPSVVSYNTLM 129

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G+ + GDL+    ++  M+  G++ D  +++ LI+G C+  K+ +A  +  EML  GL 
Sbjct: 130 NGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLA 189

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  T+T +ID  CK G       + K M S   LP + TYN L+ GLCK G LK AN L
Sbjct: 190 PNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDL 249

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGN 430
           +D M   G+ PD ITY  L++G CK GN
Sbjct: 250 IDEMGMKGLKPDKITYTTLIDGCCKEGN 277



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 6/206 (2%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G    +Y ++ L++  CK+  +  A+ +   + + GL P+ V + TL++G+ +       
Sbjct: 82  GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXR------L 135

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           GD+ E  ++   M  +G+ PD  +Y++L++G CKE  ++ A ++  EM+ +G+  + V F
Sbjct: 136 GDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTF 195

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           T LI G C+ G+V  A  + + ML   L PD  TY  +I   CK GD K    L+ EM  
Sbjct: 196 TTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGM 255

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNA 399
            G  P   TY  L++G CK G L  A
Sbjct: 256 KGLKPDKITYTTLIDGCCKEGNLDTA 281



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +E+++ G       F  L+  FC+ G +  A+ +   + K GL+P   +Y  +++ + + 
Sbjct: 76  EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXRL 135

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD   GFRL   M + G  P V +Y+ L+NGLCK  ++ +AN L D ML  G+ P+ +T+
Sbjct: 136 GDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTF 195

Query: 419 NILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
             L++GHCK G  +   +  K    + L+ D   Y +L+
Sbjct: 196 TTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLI 234



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +     + +  Y  +L     P +  +N L++ LCK+G +K A  + DE G +G
Sbjct: 198 LIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKG 257

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFR 185
           L    +++ TLI+G CK  NLD  F 
Sbjct: 258 LKPDKITYTTLIDGCCKEGNLDTAFE 283


>gi|410109929|gb|AFV61044.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           lupulina]
          Length = 253

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 170/239 (71%), Gaps = 1/239 (0%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR TLH+Y TM+HFL  H+M S+A+ L+ ++VS+KG GS++++FA+ILET+GT    + V
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 74

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+  Y++ GFL DAI+C+RL R+H   +P   CR +++ +M+     +  GFY EIL
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + GY  S+Y FN+LMH+ CK+G I+ AQ VFD   K GL  + VS+NTL+NG+ +  +LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLADLD 194

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           EGFRLKS M  SG++PDVYTYS LINGLCKE+++ DA  L  EM  +GL PN V FTTL
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMGDANELFDEMLVKGLVPNGVTFTTL 253



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 24/256 (9%)

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER--------------- 228
           F   S    S  R  +++Y  +I+ LC      +A+ L+  +  R               
Sbjct: 4   FTWLSSPANSTFRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILE 63

Query: 229 --GLTPNDV-IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             G   +D+ +F+ LI  + ++G +    D  E  ++  E   + L     T   +L+  
Sbjct: 64  TKGTQRSDIYVFSGLITAYLESGFLR---DAIECYRLTRE---HKLWVPFDTCRKVLEHL 117

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            K    +      +E+++ G       F  L+  FC+ G +  A+ +   + K GL+P  
Sbjct: 118 MKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSV 177

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            +Y  +++ + +  D   GFRL   M + G  P V TY+ L+NGLCK  ++ +AN L D 
Sbjct: 178 VSYNTLMNGYIRLADLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMGDANELFDE 237

Query: 406 MLDLGVVPDDITYNIL 421
           ML  G+VP+ +T+  L
Sbjct: 238 MLVKGLVPNGVTFTTL 253


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/492 (32%), Positives = 253/492 (51%), Gaps = 47/492 (9%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           F+ T  AY  +VH L   + +S A  +L  ++  + +  S  +F  +  TR   +PG  V
Sbjct: 128 FQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWDVFDLLWATRNVCVPGFGV 187

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            DAL    ++LG L++A +CF  +RK       R C  L+ R+ +     ++  F+ ++ 
Sbjct: 188 FDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMG 247

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G   SV+ +N+++  LCKEG ++ A+ +F +  + G     V++N+LI+GH K   LD
Sbjct: 248 AAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLD 307

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   +   M+ +   PDV TY+ALIN  CK  R+  A   LHEM   GL PN V ++T I
Sbjct: 308 ECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFI 367

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK G       ++EA K   +M    L P++ TYT L+D  CK G+L  AL + +E+
Sbjct: 368 DAFCKEGM------LQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEI 421

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ GI+L+ V +TAL+ G C  G++ EAE + R ML  G+ P+  TYT ++  F K  + 
Sbjct: 422 LQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEM 481

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLC------------------------------ 391
           +    +LKEM+     P +  Y  ++ GLC                              
Sbjct: 482 EYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTL 541

Query: 392 -----KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKG 442
                K GQ   A  LL+ MLDLG++  ++TY  L++G CK G  ++    F ++ SE G
Sbjct: 542 MDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRM-SEIG 600

Query: 443 LVSDYACYTSLV 454
           L  + A YT+LV
Sbjct: 601 LQPNVAVYTALV 612



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 190/392 (48%), Gaps = 38/392 (9%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C  +RM +         F  E+   G  P+V  ++  +   CKEG +++A   F +  
Sbjct: 334 CFCKFERMPKA------FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMR 387

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +  L     ++ +LI+ +CKA NL E  +L   +  +G++ +V TY+AL++GLC+E R+ 
Sbjct: 388 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 447

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD--------------------- 255
           +AE +   M   G+ PN   +T L+ G  K   ++ A D                     
Sbjct: 448 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 507

Query: 256 --------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                   ++EA+ ++ E+  +G+N + + YT L+D + K G    AL + +EM+  G+ 
Sbjct: 508 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLI 567

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
              V + ALI G C+ G V EA      M ++GL+P+ A YT ++D  CKN   +   +L
Sbjct: 568 ATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKL 627

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM   G +P    Y AL++G  KHG L+ A  L D M+++G+  D   Y  L+ G   
Sbjct: 628 FDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSH 687

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
            G  +    L  E   KG++ D   Y  L+ K
Sbjct: 688 SGQVQKARNLLDEMIGKGVLPDEVVYMCLIKK 719



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 201/382 (52%), Gaps = 12/382 (3%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L +AI+ F  +R+            LID   +       L    EIL  G   +V  +
Sbjct: 374 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 433

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L+  LC+EG++K+A+ VF      G+     ++  L++G  KAK ++    +   M+ 
Sbjct: 434 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 493

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
             ++PD+  Y  ++ GLC E+RL++A+LL+ E+ E G+  N VI+TTL+D + K+G+   
Sbjct: 494 KCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQ--- 550

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                EA  +++EM   GL   ++TY  L+DG CK G ++ A+     M + G++ +   
Sbjct: 551 ---ATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAV 607

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +TAL+ G C+      A+++  EML  G+ PD   YT +ID   K+G+ +    L   M 
Sbjct: 608 YTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMI 667

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G    +  Y AL+ GL   GQ++ A  LLD M+  GV+PD++ Y  L++ +   G  +
Sbjct: 668 EIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVD 727

Query: 433 DFDKLQSE---KGLV---SDYA 448
           +  +LQ+E   +G++   SD+A
Sbjct: 728 EALELQNEMAKRGMITGLSDHA 749


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 244/469 (52%), Gaps = 25/469 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG---MGSS-------ASLFASILET 52
           FR TL +Y  ++  L+     S AR LL  ++ +K     G         AS  A + E 
Sbjct: 175 FRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMADLNEV 234

Query: 53  RGTHLPGLVLDALMIVYV----DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
             + +    +D L+ VY     ++GF  +AI  FR L         + C  L+  +++ N
Sbjct: 235 GESGVAVAAVDLLIHVYCTQFRNVGF-RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKAN 293

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
               +  +  E +  G SP VY+F+  ++  CK GK++DA  +F +  K G+    V++N
Sbjct: 294 ELEKSY-WVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYN 352

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            LI+G CK  NLDE FR K  M   G+   + TYS LINGL K  + ++A  +L E  E+
Sbjct: 353 NLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEK 412

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G TPN+V++ TLIDG+CK       G++ +A +I  +M + G+NP+ +T   ++ GFCK 
Sbjct: 413 GFTPNEVVYNTLIDGYCK------MGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI 466

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G +E A  I +EM+ RG  ++  AFT +I   C   +   A R LREML   ++P+D   
Sbjct: 467 GQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLL 526

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T ++   CK G       L   +   G    + T NAL++GLCK G ++ A  LL  ML+
Sbjct: 527 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 586

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            G V D ITYN L+ G CK G  E+  KL+ E   +G+  D   Y  L+
Sbjct: 587 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 635



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +  +L+ G+  ++   N L+H LCK G +++A  +  +  +RG     +++NTLI+G C
Sbjct: 545 LWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCC 604

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   ++EGF+L+  M   G+ PD +TY+ LI+G+C+  +LD+A  L +E   R L PN  
Sbjct: 605 KEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 664

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  +IDG+CK  +I+      E  K+  E+ T  L  + + Y  L+  +C+ G+   A 
Sbjct: 665 TYGVMIDGYCKADKIE------EGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAF 718

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  +M  +GI      +++LI G C  G++ +A+ ++ EM K GL P+   YT +I  +
Sbjct: 719 KLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGY 778

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G       +L+EM S    P   TY  +++G  K G +K A  LL  M+  G+VPD 
Sbjct: 779 CKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDT 838

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSEKGL 443
           +TYN+L  G CK G  E+  KL +E G+
Sbjct: 839 VTYNVLTNGFCKEGKIEE-GKLLAEDGV 865



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 231/472 (48%), Gaps = 29/472 (6%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE-------------- 51
           TL  YS +++ L+  +  ++A  +L   + +KG   +  ++ ++++              
Sbjct: 382 TLITYSVLINGLMKLEKFNEANSVLKETL-EKGFTPNEVVYNTLIDGYCKMGNLGDALRI 440

Query: 52  -----TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
                ++G +   + L++++  +  +G ++ A      +    F I       +I  +  
Sbjct: 441 RGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCM 500

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
            +     L F  E+L     P+  +   L+  LCKEGK  DA  ++    ++G  A  V+
Sbjct: 501 NSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVT 560

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
            N LI+G CK  N+ E  RL   M   G   D  TY+ LI+G CKE ++++   L  EM 
Sbjct: 561 TNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMV 620

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
           ++G+ P+   +  LI G C+ G++D      EA  + +E  +  L P+  TY +++DG+C
Sbjct: 621 KQGIEPDTFTYNLLIHGMCRIGKLD------EAVNLWNECKSRDLVPNVYTYGVMIDGYC 674

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K   +E    +  E++ + +EL++V +  LI  +CR G  VEA ++  +M   G+ P  A
Sbjct: 675 KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTA 734

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           TY+ +I   C  G  +    L+ EMR +G LP V  Y AL+ G CK GQ+     +L  M
Sbjct: 735 TYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM 794

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
               + P+ ITY ++++G+ K G+ +   KL  E   KG+V D   Y  L +
Sbjct: 795 SSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTN 846


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 244/469 (52%), Gaps = 25/469 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG---MGSS-------ASLFASILET 52
           FR TL +Y  ++  L+     S AR LL  ++ +K     G         AS  A + E 
Sbjct: 108 FRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMADLNEV 167

Query: 53  RGTHLPGLVLDALMIVYV----DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
             + +    +D L+ VY     ++GF  +AI  FR L         + C  L+  +++ N
Sbjct: 168 GESGVAVAAVDLLIHVYCTQFRNVGF-RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKAN 226

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
               +  +  E +  G SP VY+F+  ++  CK GK++DA  +F +  K G+    V++N
Sbjct: 227 ELEKSY-WVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYN 285

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            LI+G CK  NLDE FR K  M   G+   + TYS LINGL K  + ++A  +L E  E+
Sbjct: 286 NLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEK 345

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G TPN+V++ TLIDG+CK       G++ +A +I  +M + G+NP+ +T   ++ GFCK 
Sbjct: 346 GFTPNEVVYNTLIDGYCK------MGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI 399

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G +E A  I +EM+ RG  ++  AFT +I   C   +   A R LREML   ++P+D   
Sbjct: 400 GQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLL 459

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T ++   CK G       L   +   G    + T NAL++GLCK G ++ A  LL  ML+
Sbjct: 460 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 519

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            G V D ITYN L+ G CK G  E+  KL+ E   +G+  D   Y  L+
Sbjct: 520 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +  +L+ G+  ++   N L+H LCK G +++A  +  +  +RG     +++NTLI+G C
Sbjct: 478 LWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCC 537

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   ++EGF+L+  M   G+ PD +TY+ LI+G+C+  +LD+A  L +E   R L PN  
Sbjct: 538 KEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 597

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  +IDG+CK  +I+      E  K+  E+ T  L  + + Y  L+  +C+ G+   A 
Sbjct: 598 TYGVMIDGYCKADKIE------EGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAF 651

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  +M  +GI      +++LI G C  G++ +A+ ++ EM K GL P+   YT +I  +
Sbjct: 652 KLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGY 711

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G       +L+EM S    P   TY  +++G  K G +K A  LL  M+  G+VPD 
Sbjct: 712 CKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDT 771

Query: 416 ITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +TYN+L  G CK G  E+  K+    S++GL  D   YT+LV
Sbjct: 772 VTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLV 813



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 29/233 (12%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+VY + V++   CK  KI++ + +F E   + L   +V +NTLI  +C+  N  E F+L
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+ P   TYS+LI+G+C   R++DA+ L+ EM + GL PN V +T LI G+CK
Sbjct: 654 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCK 713

Query: 247 NGRIDM-----------------------------AGDMKEARKIVDEMCTNGLNPDKIT 277
            G++D                              +GDMK A K++ EM   G+ PD +T
Sbjct: 714 LGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVT 773

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           Y +L +GFCKEG +E    I   M + G+ LD + +T L+ G+ +   +   E
Sbjct: 774 YNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSALTNQE 826



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 19/141 (13%)

Query: 98  RCLIDRMMRTNL-PTVT-----LGFYL-------------EILDYGYSPSVYVFNVLMHK 138
           +CLID M +  L P V      +G Y              E+  Y   P+   + V++  
Sbjct: 686 KCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDG 745

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
             K G +K A  +  E   +G+    V++N L NG CK   ++EGF++   M   G+  D
Sbjct: 746 YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLD 805

Query: 199 VYTYSALINGLCKENRLDDAE 219
             TY+ L++G  + + L + E
Sbjct: 806 EITYTTLVHGWQQPSALTNQE 826


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/499 (30%), Positives = 252/499 (50%), Gaps = 35/499 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASL-FASILETRG-THLP 58
           PH   TL      +H L   K++  A+ L   + +K      ASL F S+ ET    +  
Sbjct: 74  PHQFFTLRCKCITLHILTRFKLYKTAQTLAEDVAAKTLDDEDASLVFRSLQETYDLCNST 133

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP-TVTLGFY 117
             V D ++  Y  L  +D A+    L + H F         ++D  +R+    +     +
Sbjct: 134 SSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+L    SP+V+ +N+L+   C  G +  A   FD   K+G     V++NTLI+G+CK 
Sbjct: 194 KEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKL 253

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + +D+GF L   M   G+ P++ +Y+ +INGLC+E R+ +   +L EM +RG + ++V +
Sbjct: 254 RKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTY 313

Query: 238 TTLIDGHCKNGRIDM-----------------------------AGDMKEARKIVDEMCT 268
            TLI G+CK G                                 AG+M  A + +D+M  
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL P++ TYT L+DGF ++G +  A  + KEMI  G     V + ALI+G C  GK+V+
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVD 433

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L +M + GL PD  +Y+ V+  FC++ D     R+ ++M + G  P   TY++L+ 
Sbjct: 434 AIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQ 493

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVS 445
           G C+  + K A  L D ML +G+ PD+ TY  L+  +C  G+ +   +L +   EKG++ 
Sbjct: 494 GFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLP 553

Query: 446 DYACYTSLVSKSSKYRQKR 464
           D   Y+ L++  +K  + R
Sbjct: 554 DVVTYSVLINGLNKQARTR 572



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 228/431 (52%), Gaps = 50/431 (11%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFR 91
           I SK+ +  + ++F  +L+++ +  P +    ++I  +   G LD A++ F        R
Sbjct: 180 IRSKRNISFAENVFKEMLQSQVS--PNVFTYNILIRGFCLAGNLDVALRFFD-------R 230

Query: 92  IPARGC-------RCLIDRMMRTNLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKE 142
           +  +GC         LID   +  L  +  GF L   +   G  P++  +NV+++ LC+E
Sbjct: 231 MEKKGCLPNVVTYNTLIDGYCK--LRKIDDGFELLRSMALKGLEPNLISYNVVINGLCRE 288

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
           G++K+   V  E  KRG     V++NTLI G+CK  N  +   + + M   G+ P V TY
Sbjct: 289 GRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITY 348

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID----------- 251
           ++LI+ +CK   ++ A   L +M  RGL PN+  +TTL+DG  + G ++           
Sbjct: 349 TSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMID 408

Query: 252 ------------------MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
                             +AG M +A  ++++M   GL PD ++Y+ +L GFC+  D++ 
Sbjct: 409 NGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDE 468

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL ++++M+ +GI+ D + +++LI GFC   +  EA  +  EML+VGL PD+ TYT +I+
Sbjct: 469 ALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALIN 528

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +C  GD +   +L  EM   G LP V TY+ L+NGL K  + + A  LL  +     VP
Sbjct: 529 AYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVP 588

Query: 414 DDITYNILLEG 424
            D+TY+ L+E 
Sbjct: 589 SDVTYHTLIEN 599



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 177/327 (54%), Gaps = 21/327 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G+SPSV  +N L++  C  GK+ DA  V ++  ++GL    VS++T+++G C++ 
Sbjct: 405 EMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSY 464

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++DE  R+K  M   G++PD  TYS+LI G C++ R  +A  L  EM   GL P++  +T
Sbjct: 465 DVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYT 524

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA---- 294
            LI+ +C      M GD+++A ++ +EM   G+ PD +TY++L++G  K+     A    
Sbjct: 525 ALINAYC------MEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLL 578

Query: 295 LDIRKE-----------MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           L +  E           +I+    ++  +  +LI GFC  G + EA+++   ML+   KP
Sbjct: 579 LKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKP 638

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D   Y ++I   C+ GD +  + L KEM   G L    T  AL+  L K G++   N ++
Sbjct: 639 DGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVI 698

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGN 430
             +L    + +     +L+E + + GN
Sbjct: 699 ANVLRSCELSEAEQAKVLVEINHREGN 725



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 181/368 (49%), Gaps = 44/368 (11%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + E+L +G SPSV  +  L+H +CK G +  A    D+   RGL     ++ TL++G
Sbjct: 330 LVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
             +   ++E +R+   M  +G  P V TY+ALING C   ++ DA  +L +M E+GLTP+
Sbjct: 390 FSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPD 449

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIVD 264
            V ++T++ G C++  +D A  +K                             EA  + D
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFD 509

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   GL PD+ TYT L++ +C EGDL+ A+ +  EM+++G+  D V ++ LI+G  +  
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQA 569

Query: 325 KVVEAERMLREMLKVGLKPDDATY-TMVIDC--------------FCKNGDTKTGFRLLK 369
           +  EA+R+L ++      P D TY T++ +C              FC  G      ++ +
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFE 629

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M    H P    YN +++G C+ G ++ A  L   M+  G +   +T   L++   K G
Sbjct: 630 SMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEG 689

Query: 430 NPEDFDKL 437
              + + +
Sbjct: 690 KVNELNSV 697



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 79/262 (30%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P    ++ L+   C++ + K+A  +FDE  + GL     ++  LIN +C   +L + 
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKA 539

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID- 242
            +L + M   G+ PDV TYS LINGL K+ R  +A+ LL ++      P+DV + TLI+ 
Sbjct: 540 IQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIEN 599

Query: 243 --------------GHCKNGRIDMA-----------------------------GDMKEA 259
                         G C  G +  A                             GD+++A
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKA 659

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEG------------------------------ 289
             +  EM  +G     +T   L+    KEG                              
Sbjct: 660 YSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEI 719

Query: 290 -----DLESALDIRKEMIKRGI 306
                +++  LD+  EM K G 
Sbjct: 720 NHREGNMDVVLDVLAEMAKDGF 741


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 134/384 (34%), Positives = 221/384 (57%), Gaps = 35/384 (9%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+  +L  G +P+VY +N+L+  LC  G  K+A  V  +    G    AV++NTL+   C
Sbjct: 144 FFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFC 203

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +A  +D   RL  +M   G++P++ T+++++NG+CK  R++DA  +  EM + GL P+ V
Sbjct: 204 RAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGV 263

Query: 236 IFTTLIDGHCKNG-----------------------------RIDMAGDMKEARKIVDEM 266
            + TL+ G+CK G                              +  AG+++ A  +V EM
Sbjct: 264 SYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREM 323

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL  ++IT+T L+DGFCK+G L+ AL   +EM +  I+   V + ALI+G+C  G++
Sbjct: 324 RERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRM 383

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA  ++REM   G+KPD  TY+ ++  +CKNGDT + F+L ++M  +G LP   TY++L
Sbjct: 384 DEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSL 443

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGL 443
           +  LC+  +L +A++L   M+ LG+ PD++TY  L++GHCK GN E    L  E    G+
Sbjct: 444 IRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGV 503

Query: 444 VSDYACYTSLV---SKSSKYRQKR 464
           + D   Y+ L+   SKS++ ++ +
Sbjct: 504 LPDVVTYSVLINGLSKSARTKEAQ 527



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 199/369 (53%), Gaps = 37/369 (10%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  FN +++ +CK G+++DA+ VFDE  K GL    VS+NTL+ G+CK     E 
Sbjct: 222 GLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEA 281

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M   G+ PDV T+++LI+ +CK   L+ A  L+ EM ERGL  N++ FT LIDG
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341

Query: 244 HCKNGRID-----------------------------MAGDMKEARKIVDEMCTNGLNPD 274
            CK G +D                             M G M EAR++V EM   G+ PD
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPD 401

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY+ +L  +CK GD  SA  + ++M++ G+  D + +++LI   C   ++ +A  + +
Sbjct: 402 VVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFK 461

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M+ +GL+PD+ TYT +ID  CK G+ +    L  EM   G LP V TY+ L+NGL K  
Sbjct: 462 NMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSA 521

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
           + K A  LL  +     VP +I Y+ L+   C++       +L+S   L+  + C   L+
Sbjct: 522 RTKEAQRLLFKLYHEEPVPANIKYDALMRC-CRNA------ELKSVLALLKGF-CMKGLM 573

Query: 455 SKSSKYRQK 463
           +++ K  Q 
Sbjct: 574 NEADKVYQS 582



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 173/333 (51%), Gaps = 21/333 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+   G  P V  F  L+H +CK G ++ A  +  E  +RGL    ++F  LI+
Sbjct: 281 ALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALID 340

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   LD+       M    ++P V  Y+ALING C   R+D+A  L+ EM  +G+ P
Sbjct: 341 GFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKP 400

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++T++  +CKN      GD   A ++  +M  NG+ PD ITY+ L+   C+E  L 
Sbjct: 401 DVVTYSTILSAYCKN------GDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  + K MI  G++ D V +T+LI G C+ G V  A  +  EM+K G+ PD  TY+++I
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLI 514

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM---------------NGLCKHGQLK 397
           +   K+  TK   RLL ++  +  +PA   Y+ALM                G C  G + 
Sbjct: 515 NGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMN 574

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            A+ +  ++LD     D   Y++L+ GHC+ GN
Sbjct: 575 EADKVYQSILDRNWNLDGSVYSVLIHGHCREGN 607



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 197/403 (48%), Gaps = 24/403 (5%)

Query: 44  SLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           S+FA +  TR   +P +V   +L+ V    G L+ A+   R +R+   ++       LID
Sbjct: 283 SVFAEM--TRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALID 340

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              +       L    E+      PSV  +N L++  C  G++ +A+ +  E   +G+  
Sbjct: 341 GFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKP 400

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             V+++T+++ +CK  +    F+L   M  +G+ PD  TYS+LI  LC+E RL DA +L 
Sbjct: 401 DVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLF 460

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
             M   GL P++V +T+LIDGHCK G ++       A  + DEM   G+ PD +TY++L+
Sbjct: 461 KNMISLGLQPDEVTYTSLIDGHCKEGNVE------RALSLHDEMVKAGVLPDVVTYSVLI 514

Query: 283 DGFCKEGDLESALDI-----RKEMIKRGIELDNV----------AFTALISGFCRGGKVV 327
           +G  K    + A  +      +E +   I+ D +          +  AL+ GFC  G + 
Sbjct: 515 NGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMN 574

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA+++ + +L      D + Y+++I   C+ G+        K+M   G  P   +  +L+
Sbjct: 575 EADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLI 634

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            GL + G +  A+ ++  +L+   + D      L++ + K GN
Sbjct: 635 RGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGN 677



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 183/398 (45%), Gaps = 49/398 (12%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
            L+H++     +  +  L   + E RG  +  +   AL+  +   GFLDDA+   R +R+
Sbjct: 302 SLIHVMCKAGNLERAVGLVREMRE-RGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQ 360

Query: 88  HYFRIPARGCR-------CLIDRM--------------MRTNLPTVTL------------ 114
              + P+  C        C++ RM              ++ ++ T +             
Sbjct: 361 CRIQ-PSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTH 419

Query: 115 -GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             F L  ++L+ G  P    ++ L+  LC+E ++ DA ++F      GL    V++ +LI
Sbjct: 420 SAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLI 479

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +GHCK  N++    L   M  +G+ PDV TYS LINGL K  R  +A+ LL ++      
Sbjct: 480 DGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPV 539

Query: 232 PNDVIFTTLIDGHCKNGRID----------MAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           P ++ +  L+   C+N  +           M G M EA K+   +     N D   Y++L
Sbjct: 540 PANIKYDALMRC-CRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVL 598

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G C+EG++  AL   K+M++ G   ++ +  +LI G    G VVEA+++++++L    
Sbjct: 599 IHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCS 658

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
             D      +ID   K G+      +L  M  DG LP+
Sbjct: 659 LADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPS 696



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 7/240 (2%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G  P V  Y+A++  L  +  L  A      M   G+ PN   +  L+   C  GR    
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALC--GR---- 170

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G  KEA  ++ +M   G +P+ +TY  L+  FC+ G+++ A  +   M + G++ + V F
Sbjct: 171 GHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTF 230

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            ++++G C+ G++ +A ++  EM+K GL PD  +Y  ++  +CK G +     +  EM  
Sbjct: 231 NSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTR 290

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P V T+ +L++ +CK G L+ A  L+  M + G+  ++IT+  L++G CK G  +D
Sbjct: 291 KGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDD 350



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            A R    ML  G+ P+  TY +++   C  G  K    +L++MR  G  P   TYN L+
Sbjct: 140 SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLV 199

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGL 443
              C+ G++  A  L+D M + G+ P+ +T+N ++ G CK G  ED    FD++  E GL
Sbjct: 200 AAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKE-GL 258

Query: 444 VSDYACYTSLV 454
             D   Y +LV
Sbjct: 259 APDGVSYNTLV 269



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN-PED 433
           G+ P+V  YNA++  L     L +A    D+ML  GV P+  TYNIL+   C  G+  E 
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 434 FDKLQSEKGLVSD--YACYTSLVS 455
              L+  +G   D     Y +LV+
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVA 200


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 218/411 (53%), Gaps = 29/411 (7%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
            +V D L+ V  +L   D+A +CF ++++         C  ++   ++ N   +    Y 
Sbjct: 179 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 238

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+     S +VY FN++++ LCKEGK+K A+         G     VS+NT+I+G+    
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 298

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N++   R+   M   G+ PD YTY +LI+G+CKE RL++A  L  +M E GL PN V + 
Sbjct: 299 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 358

Query: 239 TLIDGHCKNGRID-----------------------------MAGDMKEARKIVDEMCTN 269
           TLIDG+C  G ++                             M G M EA  ++ EM   
Sbjct: 359 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 418

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ PD ITY IL++G+ + G+ + A D+  EM+ +GIE  +V +T+LI    R  ++ EA
Sbjct: 419 GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 478

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           + +  ++L  G+ PD   +  ++D  C NG+ +  F LLKEM      P   T+N LM G
Sbjct: 479 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 538

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            C+ G+++ A MLLD M   G+ PD I+YN L+ G+ + G+ +D  +++ E
Sbjct: 539 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 589



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 180/330 (54%), Gaps = 29/330 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y +  L+  +CKEG++++A  +FD+  + GL   AV++NTLI+G+C   +L+  
Sbjct: 314 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +  M   G+ P V TY+ L++ L  E R+ +A+ ++ EM ++G+ P+ + +  LI+G
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 244 HCKNGRIDMAGD-----------------------------MKEARKIVDEMCTNGLNPD 274
           + + G    A D                             MKEA  + +++   G++PD
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 493

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            I +  ++DG C  G++E A  + KEM ++ +  D V F  L+ G CR GKV EA  +L 
Sbjct: 494 VIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLD 553

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM + G+KPD  +Y  +I  + + GD K  FR+  EM S G  P + TYNAL+  LCK+ 
Sbjct: 554 EMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQ 613

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +   A  LL  M++ G+ PDD TY  L+EG
Sbjct: 614 EGDLAEELLKEMVNKGISPDDSTYLSLIEG 643



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 160/272 (58%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  PSV  +N+L+H L  EG++ +A  +  E  K+G+   A+++N LING+ +  
Sbjct: 379 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 438

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N  + F L + M   G+ P   TY++LI  L + NR+ +A+ L  ++ ++G++P+ ++F 
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 498

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            ++DGHC NG ++       A  ++ EM    + PD++T+  L+ G C+EG +E A  + 
Sbjct: 499 AMVDGHCANGNVE------RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 552

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM +RGI+ D++++  LISG+ R G + +A R+  EML +G  P   TY  +I C CKN
Sbjct: 553 DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKN 612

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +      LLKEM + G  P   TY +L+ G+
Sbjct: 613 QEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 168/334 (50%), Gaps = 29/334 (8%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S  VF++L+   C+  +  +A   F    ++G+     + N +++   K   ++  + L 
Sbjct: 178 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 237

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           + M    +   VYT++ ++N LCKE +L  A   +  M   G  PN V + T+I G+   
Sbjct: 238 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 297

Query: 248 GRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
           G I+ A                             G ++EA  + D+M   GL P+ +TY
Sbjct: 298 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 357

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+DG+C +GDLE A   R EM+K+GI      +  L+      G++ EA+ M++EM K
Sbjct: 358 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 417

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G+ PD  TY ++I+ + + G+ K  F L  EM S G  P   TY +L+  L +  ++K 
Sbjct: 418 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKE 477

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           A+ L + +LD GV PD I +N +++GHC +GN E
Sbjct: 478 ADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 511



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 122/212 (57%), Gaps = 10/212 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P+   +  L++ L +  ++K+A  +F++   +G+    + FN +++GHC   
Sbjct: 449 EMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANG 508

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N++  F L   M+   + PD  T++ L+ G C+E ++++A +LL EM  RG+ P+ + + 
Sbjct: 509 NVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYN 568

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK--EGDLESALD 296
           TLI G+   GR    GD+K+A ++ DEM + G NP  +TY  L+   CK  EGDL  A +
Sbjct: 569 TLISGY---GR---RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDL--AEE 620

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           + KEM+ +GI  D+  + +LI G      +VE
Sbjct: 621 LLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 652


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 218/411 (53%), Gaps = 29/411 (7%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
            +V D L+ V  +L   D+A +CF ++++         C  ++   ++ N   +    Y 
Sbjct: 157 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 216

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+     S +VY FN++++ LCKEGK+K A+         G     VS+NT+I+G+    
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 276

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N++   R+   M   G+ PD YTY +LI+G+CKE RL++A  L  +M E GL PN V + 
Sbjct: 277 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 336

Query: 239 TLIDGHCKNGRID-----------------------------MAGDMKEARKIVDEMCTN 269
           TLIDG+C  G ++                             M G M EA  ++ EM   
Sbjct: 337 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 396

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ PD ITY IL++G+ + G+ + A D+  EM+ +GIE  +V +T+LI    R  ++ EA
Sbjct: 397 GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 456

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           + +  ++L  G+ PD   +  ++D  C NG+ +  F LLKEM      P   T+N LM G
Sbjct: 457 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 516

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            C+ G+++ A MLLD M   G+ PD I+YN L+ G+ + G+ +D  +++ E
Sbjct: 517 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 567



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 180/330 (54%), Gaps = 29/330 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y +  L+  +CKEG++++A  +FD+  + GL   AV++NTLI+G+C   +L+  
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +  M   G+ P V TY+ L++ L  E R+ +A+ ++ EM ++G+ P+ + +  LI+G
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 244 HCKNGRIDMAGD-----------------------------MKEARKIVDEMCTNGLNPD 274
           + + G    A D                             MKEA  + +++   G++PD
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 471

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            I +  ++DG C  G++E A  + KEM ++ +  D V F  L+ G CR GKV EA  +L 
Sbjct: 472 VIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLD 531

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM + G+KPD  +Y  +I  + + GD K  FR+  EM S G  P + TYNAL+  LCK+ 
Sbjct: 532 EMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQ 591

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +   A  LL  M++ G+ PDD TY  L+EG
Sbjct: 592 EGDLAEELLKEMVNKGISPDDSTYLSLIEG 621



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 160/272 (58%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  PSV  +N+L+H L  EG++ +A  +  E  K+G+   A+++N LING+ +  
Sbjct: 357 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 416

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N  + F L + M   G+ P   TY++LI  L + NR+ +A+ L  ++ ++G++P+ ++F 
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 476

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            ++DGHC NG ++       A  ++ EM    + PD++T+  L+ G C+EG +E A  + 
Sbjct: 477 AMVDGHCANGNVE------RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 530

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM +RGI+ D++++  LISG+ R G + +A R+  EML +G  P   TY  +I C CKN
Sbjct: 531 DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKN 590

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +      LLKEM + G  P   TY +L+ G+
Sbjct: 591 QEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 168/334 (50%), Gaps = 29/334 (8%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S  VF++L+   C+  +  +A   F    ++G+     + N +++   K   ++  + L 
Sbjct: 156 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 215

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           + M    +   VYT++ ++N LCKE +L  A   +  M   G  PN V + T+I G+   
Sbjct: 216 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 275

Query: 248 GRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
           G I+ A                             G ++EA  + D+M   GL P+ +TY
Sbjct: 276 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 335

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+DG+C +GDLE A   R EM+K+GI      +  L+      G++ EA+ M++EM K
Sbjct: 336 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 395

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G+ PD  TY ++I+ + + G+ K  F L  EM S G  P   TY +L+  L +  ++K 
Sbjct: 396 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKE 455

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           A+ L + +LD GV PD I +N +++GHC +GN E
Sbjct: 456 ADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 489



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 122/212 (57%), Gaps = 10/212 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P+   +  L++ L +  ++K+A  +F++   +G+    + FN +++GHC   
Sbjct: 427 EMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANG 486

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N++  F L   M+   + PD  T++ L+ G C+E ++++A +LL EM  RG+ P+ + + 
Sbjct: 487 NVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYN 546

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK--EGDLESALD 296
           TLI G+   GR    GD+K+A ++ DEM + G NP  +TY  L+   CK  EGDL  A +
Sbjct: 547 TLISGY---GR---RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDL--AEE 598

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           + KEM+ +GI  D+  + +LI G      +VE
Sbjct: 599 LLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 630


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/502 (30%), Positives = 253/502 (50%), Gaps = 38/502 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASL-FASILETRGT-HLP 58
           PH   TL      +H L   K++  A+ L   + +K      ASL F S+ ET    +  
Sbjct: 74  PHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYST 133

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP-TVTLGFY 117
             V D ++  Y  L  +D A+    L + H F         ++D  +R+    +     +
Sbjct: 134 SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+L+   SP+V+ +N+L+   C  G I  A  +FD+   +G     V++NTLI+G+CK 
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + +D+GF+L   M   G+ P++ +Y+ +INGLC+E R+ +   +L EM  RG + ++V +
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313

Query: 238 TTLIDGHCKNGRIDM-----------------------------AGDMKEARKIVDEMCT 268
            TLI G+CK G                                 AG+M  A + +D+M  
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL P++ TYT L+DGF ++G +  A  + +EM   G     V + ALI+G C  GK+ +
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L +M + GL PD  +Y+ V+  FC++ D     R+ +EM   G  P   TY++L+ 
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVS 445
           G C+  + K A  L + ML +G+ PD+ TY  L+  +C  G+ E   +L +   EKG++ 
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553

Query: 446 DYACYTSLV---SKSSKYRQKR 464
           D   Y+ L+   +K S+ R+ +
Sbjct: 554 DVVTYSVLINGLNKQSRTREAK 575



 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 187/330 (56%), Gaps = 29/330 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  +NV+++ LC+EG++K+   V  E  +RG     V++NTLI G+CK  N  + 
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M   G+ P V TY++LI+ +CK   ++ A   L +M  RGL PN+  +TTL+DG
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
             + G ++ A                             G M++A  ++++M   GL+PD
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ++Y+ +L GFC+  D++ AL +++EM+++GI+ D + +++LI GFC   +  EA  +  
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML+VGL PD+ TYT +I+ +C  GD +   +L  EM   G LP V TY+ L+NGL K  
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + + A  LL  +     VP D+TY+ L+E 
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIEN 599



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 182/368 (49%), Gaps = 44/368 (11%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + E+L +G +PSV  +  L+H +CK G +  A    D+   RGL     ++ TL++G
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
             +   ++E +R+   M  +G  P V TY+ALING C   +++DA  +L +M E+GL+P+
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIVD 264
            V ++T++ G C++  +D A  +K                             EA  + +
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   GL PD+ TYT L++ +C EGDLE AL +  EM+++G+  D V ++ LI+G  +  
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569

Query: 325 KVVEAERMLREMLKVGLKPDDATY-TMVIDC--------------FCKNGDTKTGFRLLK 369
           +  EA+R+L ++      P D TY T++ +C              FC  G      ++ +
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFE 629

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M    H P    YN +++G C+ G ++ A  L   M+  G +   +T   L++   K G
Sbjct: 630 SMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689

Query: 430 NPEDFDKL 437
              + + +
Sbjct: 690 KVNELNSV 697



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 176/327 (53%), Gaps = 21/327 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G+SPSV  +N L++  C  GK++DA  V ++  ++GL    VS++T+++G C++ 
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++DE  R+K  M   G++PD  TYS+LI G C++ R  +A  L  EM   GL P++  +T
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA---- 294
            LI+ +C      M GD+++A ++ +EM   G+ PD +TY++L++G  K+     A    
Sbjct: 525 ALINAYC------MEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578

Query: 295 LDIRKE-----------MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           L +  E           +I+    ++  +  +LI GFC  G + EA+++   ML    KP
Sbjct: 579 LKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKP 638

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D   Y ++I   C+ GD +  + L KEM   G L    T  AL+  L K G++   N ++
Sbjct: 639 DGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVI 698

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGN 430
             +L    + +     +L+E + + GN
Sbjct: 699 VHVLRSCELSEAEQAKVLVEINHREGN 725



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 79/267 (29%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G  P    ++ L+   C++ + K+A  +++E  + GL     ++  LIN +C   
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L++  +L + M   G+ PDV TYS LINGL K++R  +A+ LL ++      P+DV + 
Sbjct: 535 DLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYH 594

Query: 239 TLID---------------GHC-----------------KNGRID------------MAG 254
           TLI+               G C                 KN + D             AG
Sbjct: 595 TLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAG 654

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG------------------------- 289
           D+++A  +  EM  +G     +T   L+    KEG                         
Sbjct: 655 DIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAK 714

Query: 290 ----------DLESALDIRKEMIKRGI 306
                     +++  LD+  EM K G 
Sbjct: 715 VLVEINHREGNMDVVLDVLAEMAKDGF 741


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 218/410 (53%), Gaps = 29/410 (7%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           L+ D L+  Y +L   ++A++CF L+++  F      C  ++   ++ N   +    Y E
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAE 206

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +       S+Y FN++++ LCKEGK+K A+         G+    V++NT+I+GHC    
Sbjct: 207 MFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGK 266

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 +   M+  G+ PD YTY++ I+GLCKE RL++A  L+ +M E GL PN V +  
Sbjct: 267 FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNA 326

Query: 240 LIDGHCKNGRID-----------------------------MAGDMKEARKIVDEMCTNG 270
           LIDG+C  G +D                             M G M +A  ++ EM   G
Sbjct: 327 LIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKG 386

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD +T+ IL++G+C+ GD + A  +  EM+ +GI+   V +T+LI    +  ++ EA+
Sbjct: 387 MMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEAD 446

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  ++ + GL PD   +  +ID  C NG+    F+LLKEM +   LP   TYN LM G 
Sbjct: 447 ALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGY 506

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           C+ G+++ A  LLD M   G+ PD I+YN L+ G+ K G+ +D  +++ E
Sbjct: 507 CREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDE 556



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 177/332 (53%), Gaps = 29/332 (8%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P  Y +N  +  LCKEG++++A  +  +  + GL   AV++N LI+G+C   +LD
Sbjct: 279 DKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLD 338

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           + +  +  M   G+   + TY+  I+ L  E R+ DA+ ++ EM E+G+ P+ V    LI
Sbjct: 339 KAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398

Query: 242 DGHCKNGRI--------DMAGD---------------------MKEARKIVDEMCTNGLN 272
           +G+C+ G          +M G                      MKEA  +  ++   GL 
Sbjct: 399 NGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD I +  L+DG C  G+++ A  + KEM    +  D + +  L+ G+CR GKV EA ++
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQL 518

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EM + G+KPD  +Y  +I  + K GD K  FR+  EM + G  P + TYNAL+ GLCK
Sbjct: 519 LDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCK 578

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + + ++A  LL  M+  G+ PDD TY  ++E 
Sbjct: 579 NQEGEHAEELLKEMVSKGITPDDSTYLSIIEA 610



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 157/272 (57%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G   S+  +N+ +H L  EG++ DA  +  E  ++G+   AV+ N LING+C+  
Sbjct: 346 EMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCG 405

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +    F L   M G G++P + TY++LI  L K NR+ +A+ L  ++ + GL P+ ++F 
Sbjct: 406 DAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFN 465

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDGHC NG ID       A +++ EM    + PD+ITY  L+ G+C+EG +E A  + 
Sbjct: 466 ALIDGHCANGNID------RAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLL 519

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM +RGI+ D++++  LISG+ + G + +A R+  EM+  G  P   TY  +I   CKN
Sbjct: 520 DEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKN 579

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            + +    LLKEM S G  P   TY +++  +
Sbjct: 580 QEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 162/310 (52%), Gaps = 12/310 (3%)

Query: 151 VFDEFG---KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           +FDE      R    T + F+ L+  +C+ K  +E      +++  G  P++ T + +++
Sbjct: 130 IFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLS 189

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
              K NR   A +L  EM    +  +   F  +I+  CK G+      +K+A++ +  M 
Sbjct: 190 LFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGK------LKKAKEFIGHME 243

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           T G+ P+ +TY  ++ G C  G  + A  I + M  +G+E D   + + ISG C+ G++ 
Sbjct: 244 TLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLE 303

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA  ++ +ML+ GL P+  TY  +ID +C  GD    +    EM S G + ++ TYN  +
Sbjct: 304 EASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFI 363

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
           + L   G++ +A+ ++  M + G++PD +T+NIL+ G+C+ G+ +    L  E   KG+ 
Sbjct: 364 HALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQ 423

Query: 445 SDYACYTSLV 454
                YTSL+
Sbjct: 424 PTLVTYTSLI 433



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 130/247 (52%), Gaps = 6/247 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G + DA    + +R+      A     LI+   R        G   E++  G  P++  +
Sbjct: 370 GRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTY 429

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L++ L K  ++K+A  +F +  + GL    + FN LI+GHC   N+D  F+L   M+ 
Sbjct: 430 TSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDN 489

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
             + PD  TY+ L+ G C+E ++++A  LL EM  RG+ P+ + + TLI G+ K      
Sbjct: 490 MKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKR----- 544

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            GDMK+A ++ DEM T G +P  +TY  L+ G CK  + E A ++ KEM+ +GI  D+  
Sbjct: 545 -GDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDST 603

Query: 313 FTALISG 319
           + ++I  
Sbjct: 604 YLSIIEA 610


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 237/462 (51%), Gaps = 32/462 (6%)

Query: 11  STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSA---SLFASILETRGTHLPGLVLDALMI 67
           +T++HFLV  K   +A+ LL  I+ K G+       SL ++      ++   +V D L+ 
Sbjct: 103 ATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVVVFDLLIR 162

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            YV    L +  + F+LLRK  F +    C  L+  +++     +    Y + +  G   
Sbjct: 163 TYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIV 222

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +VY  N++++ LCK+GK+ +  +   E  ++G++A  V++NTL+N +C+   + E F L 
Sbjct: 223 NVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLV 282

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M G G++P ++TY+ALINGLCKE   + A+ +L EM   GL PN   F  ++   C+ 
Sbjct: 283 DCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRK 342

Query: 248 -----------------------------GRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
                                        G     G++  A    ++M   GL PD + Y
Sbjct: 343 EDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIY 402

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           TIL++G+C+  D+  AL +R EM++RG  +D V +  L++G CRG  + +A+ + +EM++
Sbjct: 403 TILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE 462

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G+ PD  T T +I  +CK+G+      L + M      P V TYN LM+G CK G+++ 
Sbjct: 463 RGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEK 522

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           A  L   M+   + P  I+++IL+ G C  G   +  +L  E
Sbjct: 523 AKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDE 564



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 185/340 (54%), Gaps = 9/340 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P +  F+ ++    + G++  A   F++    GL    V +  LING+C+  
Sbjct: 354 EMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRND 413

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++    ++++ M   G   DV TY+ L+NGLC+   LDDA+ L  EM ERG+ P+    T
Sbjct: 414 DVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLT 473

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G+CK+G      +M +A  + + M    L PD +TY  L+DGFCK G++E A ++ 
Sbjct: 474 TLIHGYCKDG------NMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELW 527

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +MI R I    ++F+ LI+GFC  G V EA R+  EM + G+KP   T   +I  + + 
Sbjct: 528 YDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRA 587

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+       L  M S+G  P   TYN L+N   K      A  L++ M + G++P+ +TY
Sbjct: 588 GNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTY 647

Query: 419 NILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           N +L G  +HG  ++ + +     +KG+  D + YTSL++
Sbjct: 648 NAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLIN 687



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 180/336 (53%), Gaps = 9/336 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L ++ ++   G  P   ++ +L++  C+   +  A  + +E  +RG     V++NTL+NG
Sbjct: 384 LAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNG 443

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+ K LD+   L   M   G+ PD YT + LI+G CK+  +  A  L   M  R L P+
Sbjct: 444 LCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPD 503

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V + TL+DG CK       G+M++A+++  +M +  + P  I+++IL++GFC  G +  
Sbjct: 504 VVTYNTLMDGFCK------VGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSE 557

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  EM ++GI+   V    +I G+ R G + +A   L  M+  G+ PD  TY  +I+
Sbjct: 558 AFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLIN 617

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            F K  +    F L+  M   G LP + TYNA++ G  +HG+++ A M+L  M+D G+ P
Sbjct: 618 SFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINP 677

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           D  TY  L+ G+    N ++  ++  E   +G V D
Sbjct: 678 DKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+      L +     + E+ + G  P++   N ++    + G +  A    +     G
Sbjct: 545 LINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    +++NTLIN   K +N D  F L + ME  G+ P++ TY+A++ G  +  R+ +AE
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           ++LH+M ++G+ P+   +T+LI+G+          +MKEA ++ DEM   G  PD
Sbjct: 665 MVLHKMIDKGINPDKSTYTSLINGYVSK------DNMKEAFRVHDEMLQRGFVPD 713



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 3/187 (1%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           + + +L+  + +   L    +  + + KRG  +   A  AL+    + G V  A ++  +
Sbjct: 155 VVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYED 214

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
            +K G   +  T  ++++  CK+G        L EM   G    + TYN L+N  C+ G 
Sbjct: 215 FVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGL 274

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTS 452
           +  A  L+D M   G+ P   TYN L+ G CK G+ E   ++  E    GL  + A +  
Sbjct: 275 VSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNP 334

Query: 453 LVSKSSK 459
           ++ +S +
Sbjct: 335 MLVESCR 341



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 75/166 (45%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           +  LG + +A + +  +++   +     C  +I   +R    +    F   ++  G  P 
Sbjct: 549 FCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPD 608

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
              +N L++   KE     A  + +   +RGL    V++N ++ G  +   + E   +  
Sbjct: 609 CITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLH 668

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            M   G+ PD  TY++LING   ++ + +A  +  EM +RG  P+D
Sbjct: 669 KMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDD 714


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 241/470 (51%), Gaps = 31/470 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT-HLPG 59
           P+F+ +L ++S M+H LV  +    A+ ++  +V K G+ S   +  S++ T G      
Sbjct: 230 PNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGV-SRVEIVESLVLTYGNCGSNP 288

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           LV D L+  YV    L +  + FR+L+     +    C  L+  +++     +    Y E
Sbjct: 289 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 348

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G   +VY  N++++ LCK  KI++ +    +  ++G+    V++NTLIN +C+   
Sbjct: 349 VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 408

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+E F L   M G G++P V+TY+A+INGLCK  +   A+ +L EM + G++P+   +  
Sbjct: 409 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 468

Query: 240 LIDGHCKN-----------------------------GRIDMAGDMKEARKIVDEMCTNG 270
           L+   C+N                             G +   G + +A K   +M   G
Sbjct: 469 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 528

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L PD + YTIL+ GFC+ G +  AL +R EM+++G  LD V +  +++G C+   + EA+
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEAD 588

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  EM + G+ PD  T+T +I+ + K+G+      L + M      P V TYN L++G 
Sbjct: 589 ELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 648

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           CK  +++  N L + M+   + P+ I+Y IL+ G+C  G   +  +L  E
Sbjct: 649 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDE 698



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 186/336 (55%), Gaps = 9/336 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L ++ ++ + G +P   ++ +L+   C+ G + +A  V DE  ++G     V++NT++NG
Sbjct: 518 LKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNG 577

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK K L E   L + M   G+ PD YT++ LING  K+  ++ A  L   M +R L P+
Sbjct: 578 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPD 637

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V + TLIDG CK        +M++  ++ ++M +  + P+ I+Y IL++G+C  G +  
Sbjct: 638 VVTYNTLIDGFCK------GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSE 691

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  EM+++G E   +    ++ G+CR G  V+A+  L  ML  G+ PD  TY  +I+
Sbjct: 692 AFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 751

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            F K  +    F L+ +M + G LP V TYN ++NG  + G+++ A +++  M++ GV P
Sbjct: 752 GFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNP 811

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           D  TY  L+ GH    N ++  ++  E   +G V D
Sbjct: 812 DRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 241/470 (51%), Gaps = 31/470 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT-HLPG 59
           P+F+ +L ++S M+H LV  +    A+ ++  +V K G+ S   +  S++ T G      
Sbjct: 126 PNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGV-SRVEIVESLVLTYGNCGSNP 184

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           LV D L+  YV    L +  + FR+L+     +    C  L+  +++     +    Y E
Sbjct: 185 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 244

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G   +VY  N++++ LCK  KI++ +    +  ++G+    V++NTLIN +C+   
Sbjct: 245 VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 304

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+E F L   M G G++P V+TY+A+INGLCK  +   A+ +L EM + G++P+   +  
Sbjct: 305 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 364

Query: 240 LIDGHCKN-----------------------------GRIDMAGDMKEARKIVDEMCTNG 270
           L+   C+N                             G +   G + +A K   +M   G
Sbjct: 365 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 424

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L PD + YTIL+ GFC+ G +  AL +R EM+++G  LD V +  +++G C+   + EA+
Sbjct: 425 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 484

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  EM + G+ PD  T+T +I+ + K+G+      L + M      P V TYN L++G 
Sbjct: 485 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 544

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           CK  +++  N L + M+   + P+ I+Y IL+ G+C  G   +  +L  E
Sbjct: 545 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDE 594



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 186/336 (55%), Gaps = 9/336 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L ++ ++ + G +P   ++ +L+   C+ G + +A  V DE  ++G     V++NT++NG
Sbjct: 414 LKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNG 473

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK K L E   L + M   G+ PD YT++ LING  K+  ++ A  L   M +R L P+
Sbjct: 474 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD 533

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V + TLIDG CK        +M++  ++ ++M +  + P+ I+Y IL++G+C  G +  
Sbjct: 534 VVTYNTLIDGFCK------GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSE 587

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  EM+++G E   +    ++ G+CR G  V+A+  L  ML  G+ PD  TY  +I+
Sbjct: 588 AFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 647

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            F K  +    F L+ +M + G LP V TYN ++NG  + G+++ A +++  M++ GV P
Sbjct: 648 GFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNP 707

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           D  TY  L+ GH    N ++  ++  E   +G V D
Sbjct: 708 DRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 251/460 (54%), Gaps = 15/460 (3%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIV--SKKGMGSSA-SLFASILETRGTHLPG 59
           FR T  +Y  +VH +   +M++ A D +  ++  S+  MG    ++F  +  TR   + G
Sbjct: 100 FRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSG 159

Query: 60  L-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
             V D L  V+V+LG L++A +CF  +R       AR C  L+ R+ ++    +   F+ 
Sbjct: 160 SGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 219

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G +PSV+ +NV++  LCKEG +++++ +F +  + GL    V++N+LI+G+ K  
Sbjct: 220 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 279

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+E   L + M+  G  PD+ TY+ LIN  CK  ++  A     EM   GL PN V ++
Sbjct: 280 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 339

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLID  CK G       M+ A K++ +M   GL P++ TYT L+D  CK G+L  A  + 
Sbjct: 340 TLIDAFCKEGM------MQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 393

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M++ G++L+ V +TAL+ G C+ G+++EAE + R MLK G+ P+   YT ++  + K 
Sbjct: 394 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKA 453

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +   ++LK+M      P +  Y +++ G C   +L+   ++L+ M   G+  + +  
Sbjct: 454 ERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIS 513

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             +++ + K G   D    F ++Q + G+ +    Y  L+
Sbjct: 514 TTIIDAYFKAGKSSDALNFFQEMQ-DVGVEATIVTYCVLI 552



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 194/366 (53%), Gaps = 15/366 (4%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C  ++M R         ++ E+ + G  P+V  ++ L+   CKEG ++ A  +  +  
Sbjct: 309 CYCKFEKMPRA------FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMR 362

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + GL     ++ +LI+ +CKA NL E ++L + M  +G++ ++ TY+AL++GLCK  R+ 
Sbjct: 363 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMI 422

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +AE +   M + G++PN  ++T L+ G+ K  R      M++A KI+ +M    + PD I
Sbjct: 423 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAER------MEDAMKILKQMTECNIKPDLI 476

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  ++ G C +  LE    I +EM  RGI  + V  T +I  + + GK  +A    +EM
Sbjct: 477 LYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM 536

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
             VG++    TY ++ID  C+ G  +        M S G  P V  Y +L++GLC +  +
Sbjct: 537 QDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCI 596

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSL 453
           ++A  L D M   G+ PD   +  L++G+ KHGN ++   L S   E  +  D   YTSL
Sbjct: 597 ESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSL 656

Query: 454 VSKSSK 459
           VS  S+
Sbjct: 657 VSGFSQ 662



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 152/317 (47%), Gaps = 29/317 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G   ++  +  L+  LCK G++ +A+ VF    K G+      +  L++G+ KA+
Sbjct: 395 DMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAE 454

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++  ++   M    ++PD+  Y ++I G C + +L++ +L+L EM  RG++ N VI T
Sbjct: 455 RMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIST 514

Query: 239 TLIDGHCKNGRIDMAGDMKEARK-------------IVDEMC----------------TN 269
           T+ID + K G+   A +  +  +             ++D +C                + 
Sbjct: 515 TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSL 574

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P+   YT L+DG C    +ESA  +  EM  RG+  D  AFTALI G  + G + EA
Sbjct: 575 GLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEA 634

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++  M ++ ++ D   YT ++  F + G+     +   EM   G LP       L+  
Sbjct: 635 LVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLRE 694

Query: 390 LCKHGQLKNANMLLDTM 406
             K GQL  A  L + M
Sbjct: 695 YYKRGQLDEAIELKNEM 711



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 101/208 (48%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +++RG     ++   ++  Y   G   DA+  F+ ++             LID +    +
Sbjct: 501 MKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGI 560

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             + + ++  +L  G  P+V V+  L+  LC    I+ A+ +FDE   RG+     +F  
Sbjct: 561 VELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTA 620

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI+G+ K  NL E   L S M    +  D++ Y++L++G  +   L  A    +EM E+G
Sbjct: 621 LIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 680

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           + P +V+   L+  + K G++D A ++K
Sbjct: 681 ILPEEVLCICLLREYYKRGQLDEAIELK 708


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 239/467 (51%), Gaps = 16/467 (3%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASL-----FASILETRGTH 56
           HF   L    T+   +V        +  LHL+    G G++ S+     F +    R   
Sbjct: 89  HFHHKLSDARTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGF 148

Query: 57  LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
              +V D L+    D+   D+A +CF  +++         C  L+   ++ N        
Sbjct: 149 KSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVL 208

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+       SVY FN++++ LCKEGK+K A+         G+    V++NT+++G+C 
Sbjct: 209 YAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCS 268

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           +  ++    + + M+   + PD +TY +LI+G+CK+ RL++A  +  EM ++GL P+ VI
Sbjct: 269 SGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVI 328

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + TLIDG C  G +DMA   K      DEM   G++P   TY  L+     E   + A  
Sbjct: 329 YNTLIDGFCNKGNLDMASAYK------DEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC 382

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + KE+ ++GI  D + +  LI+G+CR     +A  +  EML  G+KP   TYT ++    
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K    K    L K++ S+G LP V  +NAL++G C +  +K A  LL  M  + V PD++
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEV 502

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           T+N +++GHC+ G  E+    FD+++  +G+  D+  + +L+S  S+
Sbjct: 503 TFNTIMQGHCREGKVEEARELFDEMK-RRGIKPDHISFNTLISGYSR 548



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 179/336 (53%), Gaps = 29/336 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + +  L+  +CK+G++++A  +F+E  ++GL  +AV +NTLI+G C   NLD     
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K  M   G+ P + TY++LI+ L  E R D+AE ++ E+ E+G++P+ + +  LI+G+C+
Sbjct: 349 KDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
                 A                               MKEA  +  ++ + G+ PD I 
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIM 468

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  L+DG C   +++ A ++ K+M +  +  D V F  ++ G CR GKV EA  +  EM 
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G+KPD  ++  +I  + + GD K  FR+  EM   G  P V TYNAL+ GLCK+ +  
Sbjct: 529 RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGD 588

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            A  LL  M+  G+ PDD TY  L+EG  K   P++
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 147/471 (31%), Positives = 242/471 (51%), Gaps = 19/471 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           F  T+ +Y  + H L   +M+  A  +L  IV  K       +F  +  TR   +PG  V
Sbjct: 6   FNHTIESYCIVAHILFCARMYYDANSILREIVLSKAELEECDVFDELWSTRNVCVPGFGV 65

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            DAL  V +DLG L++A QCF  +++       R C  L+ +  +         F+ +++
Sbjct: 66  FDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMI 125

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G  P+V+ +N+++  + KEG I+ A+ +F+E   RGL    V++N++I+G+ K   LD
Sbjct: 126 GAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +       M+     PDV TY++LIN  CK  +L        EM + GL PN V ++TL+
Sbjct: 186 DTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLV 245

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK    DM   M++A K   +M   G  P++ TYT L+D  CK G+L  A  +  EM
Sbjct: 246 DAFCKE---DM---MQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEM 299

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G+E + V +TALI G C   ++ EAE++  +M+  G+ P+ A+Y  +I  F K  + 
Sbjct: 300 LEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNM 359

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                LL E++  G  P +  Y   + GLC   +++ A ++++ M + G+  + + Y  L
Sbjct: 360 DRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTL 419

Query: 422 LEGHCKHGNP-------EDFDKLQSEKGLVS-----DYACYTSLVSKSSKY 460
           ++ + K GNP       E+  +L  E  +V+     D  C   LVSK+  Y
Sbjct: 420 MDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDY 470



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 168/322 (52%), Gaps = 7/322 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+ G   +V  +  L+  LC   ++K+A+ +F +    G+     S+N LI+G  KAK
Sbjct: 298 EMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAK 357

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D    L + ++G G++PD+  Y   I GLC   +++ A+++++EM E G+  N +I+T
Sbjct: 358 NMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYT 417

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+D + K      +G+  E   +++EM         +T+ +L+DG CK   +  A+D  
Sbjct: 418 TLMDAYFK------SGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYF 471

Query: 299 KEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             M    G++ +   +TA+I G C+  +V  A  +  +M + GL PD   YT ++D   K
Sbjct: 472 GRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLK 531

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+      L  +M   G    +  Y +L+ G  +  QL+ A   L+ M+   ++PD++ 
Sbjct: 532 QGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVL 591

Query: 418 YNILLEGHCKHGNPEDFDKLQS 439
              +L+ H + G  ++   LQS
Sbjct: 592 CIGVLKKHYELGCIDEAVGLQS 613



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 121/270 (44%), Gaps = 25/270 (9%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG---------------------SSAS 44
            L +Y+ ++H  V  K   +A +LL+ +   KG G                      +A 
Sbjct: 342 NLASYNALIHGFVKAKNMDRALELLNEL---KGRGIQPDLLLYGTFIWGLCGLEKIEAAK 398

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
           +  + ++  G     L+   LM  Y   G   + +     +++    +       LID +
Sbjct: 399 VVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGL 458

Query: 105 MRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
            +  L +  + ++  +  D+G  P+  V+  ++  LCKE ++K A  +F++  + GL   
Sbjct: 459 CKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPD 518

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             ++ +L++G+ K  N+ E   L+  M   GM+ D+  Y++L+ G  + N+L  A   L 
Sbjct: 519 RTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLE 578

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           EM    + P++V+   ++  H + G ID A
Sbjct: 579 EMIGEEILPDEVLCIGVLKKHYELGCIDEA 608


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 250/460 (54%), Gaps = 15/460 (3%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIV--SKKGMGSSA-SLFASILETRGTHLPG 59
           FR T  +Y  +VH +   +M++ A D +  ++  S+  MG    ++F  +  TR   + G
Sbjct: 159 FRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSG 218

Query: 60  L-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
             V D L  V+V+LG L++A +CF  +R       AR C  L+ R+ ++    +   F+ 
Sbjct: 219 SGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 278

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G +PSV+ +NV++  LCKEG +++++ +F +  + GL    V++N+LI+G+ K  
Sbjct: 279 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 338

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+E   L + M+  G  PD+ TY+ LIN  CK  ++  A     EM   GL PN V ++
Sbjct: 339 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 398

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLID  CK G       M+ A K+  +M   GL P++ TYT L+D  CK G+L  A  + 
Sbjct: 399 TLIDAFCKEGM------MQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 452

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M++ G++L+ V +TAL+ G C+ G+++EAE + R MLK G+ P+   YT ++  + K 
Sbjct: 453 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKA 512

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +   ++LK+M      P +  Y +++ G C   +L+   ++L+ M   G+  + +  
Sbjct: 513 ERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIS 572

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             +++ + K G   D    F ++Q + G+ +    Y  L+
Sbjct: 573 TTIIDAYFKAGKSSDALNFFQEMQ-DVGVEATIVTYCVLI 611



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 196/366 (53%), Gaps = 15/366 (4%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C  ++M R         ++ E+ + G  P+V  ++ L+   CKEG ++ A  +F +  
Sbjct: 368 CYCKFEKMPRA------FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMR 421

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + GL     ++ +LI+ +CKA NL E ++L + M  +G++ ++ TY+AL++GLCK  R+ 
Sbjct: 422 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMI 481

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +AE +   M + G++PN  ++T L+ G+ K  R      M++A KI+ +M    + PD I
Sbjct: 482 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAER------MEDAMKILKQMTECNIKPDLI 535

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  ++ G C +  LE    I +EM  RGI  + V  T +I  + + GK  +A    +EM
Sbjct: 536 LYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM 595

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
             VG++    TY ++ID  CK G  +        M S G  P V  Y +L++GLCK+  +
Sbjct: 596 QDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCI 655

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSL 453
           ++A  L D M   G+ PD   +  L++G+ KHGN ++   L S   E  +  D   YTSL
Sbjct: 656 ESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSL 715

Query: 454 VSKSSK 459
           VS  S+
Sbjct: 716 VSGFSQ 721



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 179/390 (45%), Gaps = 30/390 (7%)

Query: 58  PGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P +V  + +I  +   G +  AI+ F  +R+            LID   +    T     
Sbjct: 392 PNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKL 451

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
             ++L  G   ++  +  L+  LCK G++ +A+ VF    K G+      +  L++G+ K
Sbjct: 452 LNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIK 511

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A+ +++  ++   M    ++PD+  Y ++I G C + +L++ +L+L EM  RG++ N VI
Sbjct: 512 AERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVI 571

Query: 237 FTTLIDGHCKNGR--------------------------ID---MAGDMKEARKIVDEMC 267
            TT+ID + K G+                          ID    AG ++ A      M 
Sbjct: 572 STTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRML 631

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           + GL P+   YT L+DG CK   +ESA  +  EM  RG+  D  AFTALI G  + G + 
Sbjct: 632 SLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQ 691

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA  ++  M ++ ++ D   YT ++  F + G+     +   EM   G LP       L+
Sbjct: 692 EALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLL 751

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
               K GQL  A  L + M  +G++ +  T
Sbjct: 752 REYYKRGQLDEAIELKNEMERMGLITESAT 781



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 103/208 (49%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +++RG     ++   ++  Y   G   DA+  F+ ++             LID + +  +
Sbjct: 560 MKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGI 619

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             + + ++  +L  G  P+V V+  L+  LCK   I+ A+ +FDE   RG+     +F  
Sbjct: 620 VELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTA 679

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI+G+ K  NL E   L S M    +  D++ Y++L++G  +   L  A    +EM E+G
Sbjct: 680 LIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 739

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           + P +V+   L+  + K G++D A ++K
Sbjct: 740 ILPEEVLCICLLREYYKRGQLDEAIELK 767


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  244 bits (622), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 240/474 (50%), Gaps = 33/474 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR--------- 53
           FR T  +Y  ++H LV + + S AR LL  ++     G   + +A   E+R         
Sbjct: 116 FRFTARSYCVLIHLLVGNDLLSPARLLLIRLID----GKVPAFYARNFESRHFEIAQIMA 171

Query: 54  ----------GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
                     G  +  L++      +  LGF   A   F LL K       + C  L+  
Sbjct: 172 DFNLVFEPVIGVKIADLLVHVYSTQFKHLGF-GFAADVFSLLAKKGLFPSLKTCTFLLSS 230

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           +++ N    +   Y  I   G  P V++F+ +++  CK  +  DA  +F +  K G+   
Sbjct: 231 LVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPN 290

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V++N +I+G CK+  LDE +R K  M    + P + TYS  INGL K  ++D+A  +L 
Sbjct: 291 VVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLK 350

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM E G  PN+V++ TLIDG+CK       G++ EA KI D+M + G++P+ +T   L+ 
Sbjct: 351 EMSELGFVPNEVVYNTLIDGYCK------MGNISEALKIRDDMLSKGISPNSVTLNSLIQ 404

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFCK   +  A ++ +EMI RG+ ++  +F+ +I+  C   + V A   +REML   L+P
Sbjct: 405 GFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRP 464

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +D   T ++   CK G       L   +   G +P + T NAL++GLCK G ++    LL
Sbjct: 465 NDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLL 524

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             ML+ G+V D ITYN L+ G CK G  ++  +L+ E   KG+  D   +  L+
Sbjct: 525 RDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLL 578



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 188/342 (54%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +  +L  G+ P++   N L+H LCK G +++   +  +  +RGL    +++NTLI+G C
Sbjct: 488 LWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCC 547

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + EGF LK  M   G++PD+YT++ L++GLC  +++D+A  L HE  + G  PN  
Sbjct: 548 KEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVY 607

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  +IDG+CK      A  ++E   +++E+ +  L  + + Y  L+  +C  G++ +A 
Sbjct: 608 TYGVMIDGYCK------ANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAF 661

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +R +M  RG+ L    +++L+ G C  G V +A+ +L EM K GL P+   YT +I  +
Sbjct: 662 RLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGY 721

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K G       +L+EM S    P   TY  +++G CK G+ K A  LL+ M + G++PD 
Sbjct: 722 SKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDA 781

Query: 416 ITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +TYN    G CK G  E+  K+    S   +  D   YT+L+
Sbjct: 782 VTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLI 823



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 176/348 (50%), Gaps = 9/348 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              L F  E+L     P+  +   L+  LCK GK  +A  ++     +G     V+ N L
Sbjct: 448 VTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNAL 507

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+G CKA N+ E  +L   M   G+  D  TY+ LI+G CKE ++ +   L  EM ++G+
Sbjct: 508 IHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGI 567

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+   F  L+ G C   +ID      EA ++  E   NG  P+  TY +++DG+CK   
Sbjct: 568 QPDIYTFNLLLHGLCNADKID------EASRLWHECKKNGYVPNVYTYGVMIDGYCKANK 621

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +E   ++  E++ + +EL++V + +LI  +C  G +  A R+  +M   G+    ATY+ 
Sbjct: 622 VEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSS 681

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           ++   C  G       LL EMR +G LP V  Y  ++ G  K GQ+   N++L  M    
Sbjct: 682 LMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHN 741

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           + P+  TY I+++G CK G  ++  KL    +EKG++ D   Y +  +
Sbjct: 742 IHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTN 789



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI----DRMM 105
           +++RG  L      +LM    ++G +DDA      +RK    +P   C   I     ++ 
Sbjct: 667 MKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL-LPNVVCYTTIIGGYSKLG 725

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           + N   + L    E+  +   P+ + + +++   CK GK K+A  + +E  ++G+   AV
Sbjct: 726 QMNKVNIVLQ---EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAV 782

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           ++N   NG CK   ++E F++   M    +  D  TY+ LI+G
Sbjct: 783 TYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  244 bits (622), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 239/481 (49%), Gaps = 53/481 (11%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPG--------------------LVLDALMIV 68
           ++HL V+ K +  + SL +S  E    ++                       V D    V
Sbjct: 125 VIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQV 184

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT-LGFYLEILDYGYSP 127
            VD G L +A + F  +  +   +    C   + R+ +    T T +  + E  + G   
Sbjct: 185 LVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCW 244

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+++H +C+ G+IK+A  +      +G     +S++T++NG+C+   LD+ ++L 
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            VM+  G++P+ Y Y ++I  LC+  +L +AE    EM  +G+ P+ V++TTLIDG CK 
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364

Query: 248 GRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
           G I  A                             GDM EA K+  EM   GL PD +T+
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T L++G+CK G ++ A  +   MI+ G   + V +T LI G C+ G +  A  +L EM K
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
           +GL+P+  TY  +++  CK+G+ +   +L+ E  + G      TY  LM+  CK G++  
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           A  +L  ML  G+ P  +T+N+L+ G C HG  ED +KL +    KG+  +   + SLV 
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 604

Query: 456 K 456
           +
Sbjct: 605 Q 605



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 195/344 (56%), Gaps = 9/344 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y++  ++  LC+  K+ +A+  F E  ++G+    V + TLI+G CK  ++   
Sbjct: 311 GLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAA 370

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +    M    + PDV TY+A+I+G C+   + +A  L HEM  +GL P+ V FT LI+G
Sbjct: 371 SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 430

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK      AG MK+A ++ + M   G +P+ +TYT L+DG CKEGDL+SA ++  EM K
Sbjct: 431 YCK------AGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ +   + ++++G C+ G + EA +++ E    GL  D  TYT ++D +CK+G+   
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +LKEM   G  P + T+N LMNG C HG L++   LL+ ML  G+ P+  T+N L++
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 604

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
            +C   N +    +  +   +G+  D   Y +LV    K R  +
Sbjct: 605 QYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMK 648



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 195/353 (55%), Gaps = 13/353 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+ E+     +P V  +  ++   C+ G + +A  +F E   +GL   +V+F  LING+C
Sbjct: 373 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA ++ + FR+ + M  +G  P+V TY+ LI+GLCKE  LD A  LLHEM + GL PN  
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + ++++G CK+G I+      EA K+V E    GLN D +TYT L+D +CK G+++ A 
Sbjct: 493 TYNSIVNGLCKSGNIE------EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           +I KEM+ +G++   V F  L++GFC  G + + E++L  ML  G+ P+  T+  ++  +
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C   + K    + K+M S G  P  +TY  L+ G CK   +K A  L   M   G     
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 666

Query: 416 ITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            TY++L++G  K        E FD+++ E GL +D   +       +KY+ KR
Sbjct: 667 STYSVLIKGFLKRKKFLEAREVFDQMRRE-GLAADKEIFDFF--SDTKYKGKR 716



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 64/249 (25%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G  P+++ +N +++ LCK G I++A  +  EF   GL+A  V++ TL++ +CK+ 
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH--------------- 223
            +D+   +   M G G++P + T++ L+NG C    L+D E LL+               
Sbjct: 541 EMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 600

Query: 224 --------------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAG----DMK-- 257
                               +MC RG+ P+   +  L+ GHCK   +  A     +MK  
Sbjct: 601 SLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 660

Query: 258 -----------------------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                                  EAR++ D+M   GL  DK  +    D   K    ++ 
Sbjct: 661 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTI 720

Query: 295 LDIRKEMIK 303
           +D   E+I+
Sbjct: 721 VDPIDEIIE 729



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G +P+   FN L+ + C    +K A  ++ +   RG+     ++  L+ GHCKA+N
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN 646

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E + L   M+G G    V TYS LI G  K  +  +A  +  +M   GL  +  IF  
Sbjct: 647 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 706

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
             D   K  R D   D       +DE+  N L  +++
Sbjct: 707 FSDTKYKGKRPDTIVDP------IDEIIENYLVDEQL 737



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
           +R NL   T   Y ++   G  P    +  L+   CK   +K+A  +F E   +G   + 
Sbjct: 608 IRNNLKAAT-AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 666

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
            +++ LI G  K K   E   +   M   G+  D
Sbjct: 667 STYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 239/481 (49%), Gaps = 53/481 (11%)

Query: 29   LLHLIVSKKGMGSSASLFASILETRGTHLP--------------------GLVLDALMIV 68
            ++HL V+ K +  + SL +S  E    ++                       V D    V
Sbjct: 568  VIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQV 627

Query: 69   YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT-LGFYLEILDYGYSP 127
             VD G L +A + F  +  +   +    C   + R+ +    T T +  + E  + G   
Sbjct: 628  LVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCW 687

Query: 128  SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            +V  +N+++H +C+ G+IK+A  +      +G     +S++T++NG+C+   LD+ ++L 
Sbjct: 688  NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 747

Query: 188  SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             VM+  G++P+ Y Y ++I  LC+  +L +AE    EM  +G+ P+ V++TTLIDG CK 
Sbjct: 748  EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 807

Query: 248  GRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
            G I  A                             GDM EA K+  EM   GL PD +T+
Sbjct: 808  GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 867

Query: 279  TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            T L++G+CK G ++ A  +   MI+ G   + V +T LI G C+ G +  A  +L EM K
Sbjct: 868  TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 927

Query: 339  VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            +GL+P+  TY  +++  CK+G+ +   +L+ E  + G      TY  LM+  CK G++  
Sbjct: 928  IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 987

Query: 399  ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
            A  +L  ML  G+ P  +T+N+L+ G C HG  ED +KL +    KG+  +   + SLV 
Sbjct: 988  AQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 1047

Query: 456  K 456
            +
Sbjct: 1048 Q 1048



 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 195/344 (56%), Gaps = 9/344 (2%)

Query: 124  GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
            G  P+ Y++  ++  LC+  K+ +A+  F E  ++G+    V + TLI+G CK  ++   
Sbjct: 754  GLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAA 813

Query: 184  FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +    M    + PDV TY+A+I+G C+   + +A  L HEM  +GL P+ V FT LI+G
Sbjct: 814  SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 873

Query: 244  HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            +CK      AG MK+A ++ + M   G +P+ +TYT L+DG CKEGDL+SA ++  EM K
Sbjct: 874  YCK------AGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 927

Query: 304  RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             G++ +   + ++++G C+ G + EA +++ E    GL  D  TYT ++D +CK+G+   
Sbjct: 928  IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 987

Query: 364  GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
               +LKEM   G  P + T+N LMNG C HG L++   LL+ ML  G+ P+  T+N L++
Sbjct: 988  AQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 1047

Query: 424  GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
             +C   N +    +  +   +G+  D   Y +LV    K R  +
Sbjct: 1048 QYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMK 1091



 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 195/353 (55%), Gaps = 13/353 (3%)

Query: 116  FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            F+ E+     +P V  +  ++   C+ G + +A  +F E   +GL   +V+F  LING+C
Sbjct: 816  FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 875

Query: 176  KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            KA ++ + FR+ + M  +G  P+V TY+ LI+GLCKE  LD A  LLHEM + GL PN  
Sbjct: 876  KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 935

Query: 236  IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
             + ++++G CK+G I+      EA K+V E    GLN D +TYT L+D +CK G+++ A 
Sbjct: 936  TYNSIVNGLCKSGNIE------EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 296  DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +I KEM+ +G++   V F  L++GFC  G + + E++L  ML  G+ P+  T+  ++  +
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 356  CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            C   + K    + K+M S G  P  +TY  L+ G CK   +K A  L   M   G     
Sbjct: 1050 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 1109

Query: 416  ITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
             TY++L++G  K        E FD+++ E GL +D   +       +KY+ KR
Sbjct: 1110 STYSVLIKGFLKRKKFLEAREVFDQMRRE-GLAADKEIFDFF--SDTKYKGKR 1159



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 64/249 (25%)

Query: 119  EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            E+   G  P+++ +N +++ LCK G I++A  +  EF   GL+A  V++ TL++ +CK+ 
Sbjct: 924  EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 983

Query: 179  NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH--------------- 223
             +D+   +   M G G++P + T++ L+NG C    L+D E LL+               
Sbjct: 984  EMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1043

Query: 224  --------------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAG----DMK-- 257
                                +MC RG+ P+   +  L+ GHCK   +  A     +MK  
Sbjct: 1044 SLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 1103

Query: 258  -----------------------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                                   EAR++ D+M   GL  DK  +    D   K    ++ 
Sbjct: 1104 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTI 1163

Query: 295  LDIRKEMIK 303
            +D   E+I+
Sbjct: 1164 VDPIDEIIE 1172



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 120  ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
            +L  G +P+   FN L+ + C    +K A  ++ +   RG+     ++  L+ GHCKA+N
Sbjct: 1030 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN 1089

Query: 180  LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            + E + L   M+G G    V TYS LI G  K  +  +A  +  +M   GL  +  IF  
Sbjct: 1090 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 1149

Query: 240  LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
              D   K  R D   D       +DE+  N L
Sbjct: 1150 FSDTKYKGKRPDTIVDP------IDEIIENYL 1175



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 105  MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            +R NL   T   Y ++   G  P    +  L+   CK   +K+A  +F E   +G   + 
Sbjct: 1051 IRNNLKAAT-AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 1109

Query: 165  VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
             +++ LI G  K K   E   +   M   G+  D   +    +   K  R D     + E
Sbjct: 1110 STYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDE 1169

Query: 225  MCERGLT 231
            + E  L 
Sbjct: 1170 IIENYLV 1176


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 238/467 (50%), Gaps = 16/467 (3%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASL-----FASILETRGTH 56
           HF   L    T+   +V        +  LHL+    G G++ S+     F +    R   
Sbjct: 89  HFHHKLSDARTLCLAIVIVARLPSPKPALHLLRQALGGGTTNSIREIFEFLAASRDRLGF 148

Query: 57  LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
              +V D L+    D+   D+A +CF  +++         C  L+   ++ N        
Sbjct: 149 KSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVL 208

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+       SVY FN++++ LCKEGK+K A+         G+    V++NT+++G+C 
Sbjct: 209 YAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCS 268

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           +  ++    + + M+   + PD +TY +LI+G+CK+ RL++A  +  EM ++GL P+ VI
Sbjct: 269 SGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVI 328

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + TLIDG C  G +DMA   K      DEM   G++P   TY  L+     E   + A  
Sbjct: 329 YNTLIDGFCNKGNLDMASAYK------DEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC 382

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + KE+ ++GI  D + +  LI+G+CR     +A  +  EML  G+KP   TYT ++    
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K    K    L K++ S+G LP    +NAL++G C +  +K A  LL  M  + V PD++
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEV 502

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           T+N +++GHC+ G  E+    FD+++  +G+  D+  + +L+S  S+
Sbjct: 503 TFNTIMQGHCREGKVEEARELFDEMK-RRGIKPDHISFNTLISGYSR 548



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 179/336 (53%), Gaps = 29/336 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + +  L+  +CK+G++++A  +F+E  ++GL  +AV +NTLI+G C   NLD     
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K  M   G+ P + TY++LI+ L  E R D+AE ++ E+ E+G++P+ + +  LI+G+C+
Sbjct: 349 KDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
                 A                               MKEA  +  ++ + G+ PD I 
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIM 468

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  L+DG C   +++ A ++ K+M +  +  D V F  ++ G CR GKV EA  +  EM 
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G+KPD  ++  +I  + + GD K  FR+  EM   G  P V TYNAL+ GLCK+ +  
Sbjct: 529 RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGD 588

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            A  LL  M+  G+ PDD TY  L+EG  K   P++
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 218/383 (56%), Gaps = 36/383 (9%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   +L +G +P+VY +N+L+  LC  G++++A  V  +    G    AV++NTL+   C
Sbjct: 139 FLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198

Query: 176 KAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           +A  LD   R+ S+M   G  +P++ T+++++NGLCK  R++ A  +  EM   GL P+ 
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258

Query: 235 VIFTTLIDGHCKNGRID-----------------------------MAGDMKEARKIVDE 265
           V + TL+ G+CK G +                               AG++++A  +V +
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 318

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GL  +++T+T L+DGFCK+G L+ AL   +EM K GI+   V + ALI+G+C+ G+
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 378

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           +  A  ++REM    +KPD  TY+ +I  +CK G+  + F+L ++M   G LP   TY++
Sbjct: 379 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KG 442
           L+ GLC+  +L +A  L + ML LGV PD+ TY  L++GHCK GN E    L  E   KG
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 443 LVSDYACYTSLV---SKSSKYRQ 462
           ++ D   Y+ L+   SKS++ ++
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKE 521



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 185/304 (60%), Gaps = 6/304 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G +P V  +N L+   CK G + ++  VF E  +RGL    V+F +LI+  CKA 
Sbjct: 248 EMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAG 307

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL++   L + M   G+R +  T++ALI+G CK+  LDDA L + EM + G+ P+ V + 
Sbjct: 308 NLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYN 367

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G+CK GR+D+A      R+++ EM    + PD +TY+ ++ G+CK G+L+SA  + 
Sbjct: 368 ALINGYCKLGRMDLA------RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+K+G+  D + +++LI G C   ++ +A  +   ML++G++PD+ TYT +ID  CK 
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    L  EM   G LP V TY+ L+NGL K  + K A+ LL  +     VPD+I Y
Sbjct: 482 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 419 NILL 422
           + L+
Sbjct: 542 DALM 545



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 183/335 (54%), Gaps = 11/335 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY+PSV  +N ++  L  +  +  A+       + G+     ++N L+   C    L+E 
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLID 242
             +   M G+G  P+  TY+ L+   C+   LD AE ++  M E G   PN V F ++++
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK GR      M+ ARK+ DEM   GL PD ++Y  LL G+CK G L  +L +  EM 
Sbjct: 232 GLCKAGR------MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +RG+  D V FT+LI   C+ G + +A  ++ +M + GL+ ++ T+T +ID FCK G   
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 345

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
                ++EMR  G  P+V  YNAL+NG CK G++  A  L+  M    V PD +TY+ ++
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 405

Query: 423 EGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            G+CK GN +   +L     +KG++ D   Y+SL+
Sbjct: 406 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 182/360 (50%), Gaps = 24/360 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           +L  + E+   G  P V  F  L+H  CK G ++ A  +  +  +RGL    V+F  LI+
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   LD+       M   G++P V  Y+ALING CK  R+D A  L+ EM  + + P
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++T+I G+CK G +D A  + +      +M   G+ PD ITY+ L+ G C+E  L 
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQ------KMLKKGVLPDAITYSSLIRGLCEEKRLN 450

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++ + M++ G++ D   +T LI G C+ G V +A  +  EM++ G+ PD  TY+++I
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 510

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM---------------NGLCKHGQLK 397
           +   K+  TK   RLL ++  +  +P    Y+ALM                G C  G +K
Sbjct: 511 NGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMK 570

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
            A+ +  +MLD     D   Y+IL+ GHC+ GN      F K     G   +     SLV
Sbjct: 571 EADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 199/428 (46%), Gaps = 59/428 (13%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
            L+H       +  + +L A + E RG  +  +   AL+  +   GFLDDA+     +RK
Sbjct: 298 SLIHATCKAGNLEQAVALVAQMRE-RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
                      C                        G  PSV  +N L++  CK G++  
Sbjct: 357 -----------C------------------------GIQPSVVCYNALINGYCKLGRMDL 381

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A+ +  E   + +    V+++T+I+G+CK  NLD  F+L   M   G+ PD  TYS+LI 
Sbjct: 382 ARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR 441

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           GLC+E RL+DA  L   M + G+ P++  +TTLIDGHCK G ++      +A  + DEM 
Sbjct: 442 GLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE------KALSLHDEMI 495

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF-------------- 313
             G+ PD +TY++L++G  K    + A  +  ++       DN+ +              
Sbjct: 496 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKS 555

Query: 314 -TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
             AL+ GFC  G + EA+++ + ML    K D + Y+++I   C+ G+ +      K+M 
Sbjct: 556 VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQML 615

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P   +  +L+ GL + G +  A+  +  +L    + D      L++ + K G   
Sbjct: 616 RSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEG--M 673

Query: 433 DFDKLQSE 440
           D+ + Q E
Sbjct: 674 DYFQAQGE 681



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 7/195 (3%)

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  P    Y  +L     +  L SA      M++ G+  +   +  L+   C  G++ EA
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL-PAVETYNALMN 388
             ++ +M   G  P+  TY  ++  FC+ G+     R++  MR +G+  P + T+N+++N
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSEKGLV 444
           GLCK G+++ A  + D M+  G+ PD ++YN LL G+CK    H +   F ++ +++GLV
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLV 290

Query: 445 SDYACYTSLVSKSSK 459
            D   +TSL+  + K
Sbjct: 291 PDVVTFTSLIHATCK 305


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 218/383 (56%), Gaps = 36/383 (9%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   +L +G +P+VY +N+L+  LC  G++++A  V  +    G    AV++NTL+   C
Sbjct: 139 FLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198

Query: 176 KAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           +A  LD   R+ S+M   G  +P++ T+++++NGLCK  R++ A  +  EM   GL P+ 
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258

Query: 235 VIFTTLIDGHCKNGRID-----------------------------MAGDMKEARKIVDE 265
           V + TL+ G+CK G +                               AG++++A  +V +
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 318

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GL  +++T+T L+DGFCK+G L+ AL   +EM K GI+   V + ALI+G+C+ G+
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 378

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           +  A  ++REM    +KPD  TY+ +I  +CK G+  + F+L ++M   G LP   TY++
Sbjct: 379 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KG 442
           L+ GLC+  +L +A  L + ML LGV PD+ TY  L++GHCK GN E    L  E   KG
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 443 LVSDYACYTSLV---SKSSKYRQ 462
           ++ D   Y+ L+   SKS++ ++
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKE 521



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 185/304 (60%), Gaps = 6/304 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G +P V  +N L+   CK G + ++  VF E  +RGL    V+F +LI+  CKA 
Sbjct: 248 EMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAG 307

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL++   L + M   G+R +  T++ALI+G CK+  LDDA L + EM + G+ P+ V + 
Sbjct: 308 NLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYN 367

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G+CK GR+D+A      R+++ EM    + PD +TY+ ++ G+CK G+L+SA  + 
Sbjct: 368 ALINGYCKLGRMDLA------RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+K+G+  D + +++LI G C   ++ +A  +   ML++G++PD+ TYT +ID  CK 
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    L  EM   G LP V TY+ L+NGL K  + K A+ LL  +     VPD+I Y
Sbjct: 482 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 419 NILL 422
           + L+
Sbjct: 542 DALM 545



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 183/335 (54%), Gaps = 11/335 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY+PSV  +N ++  L  +  +  A+       + G+     ++N L+   C    L+E 
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLID 242
             +   M G+G  P+  TY+ L+   C+   LD AE ++  M E G   PN V F ++++
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK GR      M+ ARK+ DEM   GL PD ++Y  LL G+CK G L  +L +  EM 
Sbjct: 232 GLCKAGR------MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +RG+  D V FT+LI   C+ G + +A  ++ +M + GL+ ++ T+T +ID FCK G   
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 345

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
                ++EMR  G  P+V  YNAL+NG CK G++  A  L+  M    V PD +TY+ ++
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 405

Query: 423 EGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            G+CK GN +   +L     +KG++ D   Y+SL+
Sbjct: 406 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 182/360 (50%), Gaps = 24/360 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           +L  + E+   G  P V  F  L+H  CK G ++ A  +  +  +RGL    V+F  LI+
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   LD+       M   G++P V  Y+ALING CK  R+D A  L+ EM  + + P
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++T+I G+CK G +D A  + +      +M   G+ PD ITY+ L+ G C+E  L 
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQ------KMLKKGVLPDAITYSSLIRGLCEEKRLN 450

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++ + M++ G++ D   +T LI G C+ G V +A  +  EM++ G+ PD  TY+++I
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 510

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM---------------NGLCKHGQLK 397
           +   K+  TK   RLL ++  +  +P    Y+ALM                G C  G +K
Sbjct: 511 NGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMK 570

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
            A+ +  +MLD     D   Y+IL+ GHC+ GN      F K     G   +     SLV
Sbjct: 571 EADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 194/418 (46%), Gaps = 57/418 (13%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
            L+H       +  + +L A + E RG  +  +   AL+  +   GFLDDA+     +RK
Sbjct: 298 SLIHATCKAGNLEQAVALVAQMRE-RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
                                               G  PSV  +N L++  CK G++  
Sbjct: 357 -----------------------------------CGIQPSVVCYNALINGYCKLGRMDL 381

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A+ +  E   + +    V+++T+I+G+CK  NLD  F+L   M   G+ PD  TYS+LI 
Sbjct: 382 ARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR 441

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           GLC+E RL+DA  L   M + G+ P++  +TTLIDGHCK G ++      +A  + DEM 
Sbjct: 442 GLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE------KALSLHDEMI 495

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF-------------- 313
             G+ PD +TY++L++G  K    + A  +  ++       DN+ +              
Sbjct: 496 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKS 555

Query: 314 -TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
             AL+ GFC  G + EA+++ + ML    K D + Y+++I   C+ G+ +      K+M 
Sbjct: 556 VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQML 615

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             G  P   +  +L+ GL + G +  A+  +  +L    + D      L++ + K GN
Sbjct: 616 RSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGN 673



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 7/195 (3%)

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  P    Y  +L     +  L SA      M++ G+  +   +  L+   C  G++ EA
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL-PAVETYNALMN 388
             ++ +M   G  P+  TY  ++  FC+ G+     R++  MR +G+  P + T+N+++N
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSEKGLV 444
           GLCK G+++ A  + D M+  G+ PD ++YN LL G+CK    H +   F ++ +++GLV
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLV 290

Query: 445 SDYACYTSLVSKSSK 459
            D   +TSL+  + K
Sbjct: 291 PDVVTFTSLIHATCK 305


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/461 (30%), Positives = 235/461 (50%), Gaps = 35/461 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET---RGTHL 57
           P+F+ +  + S MVHFLV  +  S+A+  +  +V K G+ S   +  S++ T    G+  
Sbjct: 129 PNFKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRKSGV-SRVKVVESLISTCFYFGS-- 185

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
            GL+ D L+  YV    L +  + F++LR+    +    C  L+  ++RT    +    Y
Sbjct: 186 VGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIY 245

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E++  G   +VY  N++++ LCK+ K ++      +   +G+ A  V++NTLIN +C+ 
Sbjct: 246 GEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCRE 305

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             ++E F+L +     GM P + TY+A++ GLCK  + D A+ +L EM + GLTPN   +
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
            TL+   C+   I  A                             G + +A     EM  
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +G+ PD + YTIL+DGFC+ G L  AL +R EM+ RG  +D V +   ++G C+     +
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ +  EM++ G+ PD  T+T +I  +CK+G+      L + M      P   TYN L++
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           G CK G++  A  L D M+   ++PD I+Y  +L G C  G
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586



 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 198/396 (50%), Gaps = 67/396 (16%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI-----N 172
           +E+L  G +P+   +N L+ ++C+   I +AQ +FDE  +RG+    VSF++LI     N
Sbjct: 351 IEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARN 410

Query: 173 GH------------------------------CKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
           GH                              C+   L +  +++  M   G   DV TY
Sbjct: 411 GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTY 470

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------- 253
           +  +NGLCK+    DA++L +EM ERG+ P+   FTTLI G+CK+G +D A         
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVR 530

Query: 254 --------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
                               G+M  A+++ D+M    + PD I+Y  +L+GFC  G L  
Sbjct: 531 TNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPE 590

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL++  +M+++GI  + V    LI G+CR G + +A   L +M+  G+ PD  +Y  +ID
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            + K  + +  F L+ EM   G    + TYN ++NG C  G+++ A  +L  M+++G+ P
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINP 710

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           D  TY+ L+ GH    N ++  +   E   +GLV D
Sbjct: 711 DGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 7/365 (1%)

Query: 52  TRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
           +R   LP LV   +L+ V    G L  A+  FR + +            LID   R    
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           +  L    E+L  G    V  +N  ++ LCK+    DA M+F+E  +RG+     +F TL
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I G+CK  N+D+   L   M  + ++PD  TY+ LI+G CK   +  A+ L  +M  + +
Sbjct: 509 IRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDI 568

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ + + T+++G C +G       + EA  + D+M   G+ P+ +T   L+ G+C+ GD
Sbjct: 569 IPDHISYGTVLNGFCSSGL------LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A +   +MI  GI  D+ ++  LI G+ +   + +A  ++ EM K GL+ +  TY +
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +++ FC  G  +   ++L++M   G  P   TY++L+NG      +K A    D ML  G
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742

Query: 411 VVPDD 415
           +VPDD
Sbjct: 743 LVPDD 747


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 243/485 (50%), Gaps = 34/485 (7%)

Query: 14  VHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR-GTHLPGLVLDALMIVYVDL 72
           +H L  +K++  A+ L   +V      +   LF  +  +         V D ++     +
Sbjct: 86  LHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARV 145

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT-VTLGFYLEILDYGYSPSVYV 131
             ++ A+    L + + F         ++D ++RT     +  G + E+++ G SP+VY 
Sbjct: 146 NLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYT 205

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+L+   C  G ++     F E  + G     V++NT+I+ +CK + + E F+L  +M 
Sbjct: 206 YNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ P++ +Y+ +INGLC+E ++ +   +L EM +R   P+ V F TLI+G+C  G   
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 252 MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
            A                             G++  A + +D+M   GL+P+  TYT L+
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DGF ++G L+ A  I KEM++ G     + + ALI+G C  G++ +A  +L+EM++ G  
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  +Y+ +I  FC+N + +  F+L  EM + G  P V TY++L+ GLCK  +L     L
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
              ML LG+ PD++TY  L+  +C  G+ +   +L  E   KG   D   Y  L++  +K
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 460 YRQKR 464
             + +
Sbjct: 566 QSRTK 570



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 179/329 (54%), Gaps = 29/329 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P++  +NV+++ LC+EG++K+   + +E  KR      V+FNTLING+C   N  + 
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L + M  +G+ P+V TY+ LIN +CK   L+ A   L +M +RGL PN   +TTLIDG
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
             + G +  A                             G M++A  ++ EM   G  PD
Sbjct: 388 FSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD 447

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ++Y+ ++ GFC+  +LE A  ++ EM+ +GI  D   +++LI G C+  ++ E   + +
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQ 507

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML +GL PD+ TYT +I+ +C  GD     RL  EM   G  P + TYN L+NG  K  
Sbjct: 508 EMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLE 423
           + K A  LL  +L    VP++ITYN L++
Sbjct: 568 RTKEAKRLLLKLLYEESVPNEITYNTLID 596



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 179/369 (48%), Gaps = 44/369 (11%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E++  G SP+V  +  L++ +CK G +  A    D+   RGLH    ++ TLI+
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +   L + +++   M  +G  P + TY+ALING C   R++DA  LL EM ERG  P
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIV 263
           + V ++T+I G C+N  ++ A  +K                             E   + 
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM + GL PD++TYT L++ +C EGDL+ AL +  EMI++G   D V +  LI+GF + 
Sbjct: 507 QEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQ 566

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVID-C--------------FCKNGDTKTGFRLL 368
            +  EA+R+L ++L     P++ TY  +ID C              FC  G      R+L
Sbjct: 567 SRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVL 626

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           + M   G+    E YN +++G  K G ++ A  L   ML  G  P  +T   L +     
Sbjct: 627 ESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHE 686

Query: 429 GNPEDFDKL 437
           G   + ++L
Sbjct: 687 GKEVELNQL 695



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 189/373 (50%), Gaps = 21/373 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L+ A++    +R        R    LID   +            E+++ G++P++  +
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L++  C  G+++DA  +  E  +RG     VS++T+I+G C+ + L++ F+LK  M  
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PDV TYS+LI GLCK+ RL +   L  EM   GL P++V +T+LI+ +C      +
Sbjct: 477 KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC------I 530

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI-----RKEMIKRGIE 307
            GD+ +A ++ DEM   G +PD +TY +L++GF K+   + A  +      +E +   I 
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 308 LD-------NVAFT---ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +       N+ F    AL+ GFC  G + EA+R+L  ML+ G K ++  Y ++I    K
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+ +  + L KEM   G  P   T  AL   L   G+    N LLD  L    + +   
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAAL 710

Query: 418 YNILLEGHCKHGN 430
             +L+  + K GN
Sbjct: 711 AKVLIGINSKEGN 723



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 13/369 (3%)

Query: 22  MHSQARDLLHLI--VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAI 79
           +H   R    LI   S++G    A      +   G     +  +AL+  +  LG ++DA 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 80  QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
              + + +  F         +I    R           +E++  G SP V  ++ L+  L
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           CK+ ++ +   +F E    GL    V++ +LIN +C   +LD+  RL   M   G  PD+
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDI 553

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID-------- 251
            TY+ LING  K++R  +A+ LL ++      PN++ + TLID +C N            
Sbjct: 554 VTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLID-NCNNLEFKSALALMKG 612

Query: 252 --MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             M G M EA ++++ M   G   ++  Y +++ G  K G++E A ++ KEM+  G    
Sbjct: 613 FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPH 672

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           +V   AL       GK VE  ++L   LK     + A   ++I    K G+    F +LK
Sbjct: 673 SVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLK 732

Query: 370 EMRSDGHLP 378
           +M   G LP
Sbjct: 733 DMALSGLLP 741


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 243/485 (50%), Gaps = 34/485 (7%)

Query: 14  VHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR-GTHLPGLVLDALMIVYVDL 72
           +H L  +K++  A+ L   +V      +   LF  +  +         V D ++     +
Sbjct: 86  LHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARV 145

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT-VTLGFYLEILDYGYSPSVYV 131
             ++ A+    L + + F         ++D ++RT     +  G + E+++ G SP+VY 
Sbjct: 146 NLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYT 205

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+L+   C  G ++     F E  + G     V++NT+I+ +CK + + E F+L  +M 
Sbjct: 206 YNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ P++ +Y+ +INGLC+E ++ +   +L EM +R   P+ V F TLI+G+C  G   
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 252 MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
            A                             G++  A + +D+M   GL+P+  TYT L+
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DGF ++G L+ A  I KEM++ G     + + ALI+G C  G++ +A  +L+EM++ G  
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  +Y+ +I  FC+N + +  F+L  EM + G  P V TY++L+ GLCK  +L     L
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
              ML LG+ PD++TY  L+  +C  G+ +   +L  E   KG   D   Y  L++  +K
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 460 YRQKR 464
             + +
Sbjct: 566 QSRTK 570



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 179/329 (54%), Gaps = 29/329 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P++  +NV+++ LC+EG++K+   + +E  KR      V+FNTLING+C   N  + 
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L + M  +G+ P+V TY+ LIN +CK   L+ A   L +M +RGL PN   +TTLIDG
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
             + G +  A                             G M++A  ++ EM   G  PD
Sbjct: 388 FSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD 447

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ++Y+ ++ GFC+  +LE A  ++ EM+ +GI  D   +++LI G C+  ++ E   + +
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQ 507

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML +GL PD+ TYT +I+ +C  GD     RL  EM   G  P + TYN L+NG  K  
Sbjct: 508 EMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLE 423
           + K A  LL  +L    VP++ITYN L++
Sbjct: 568 RTKEAKRLLLKLLYEESVPNEITYNTLID 596



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 179/369 (48%), Gaps = 44/369 (11%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E++  G SP+V  +  L++ +CK G +  A    D+   RGLH    ++ TLI+
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +   L + +++   M  +G  P + TY+ALING C   R++DA  LL EM ERG  P
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIV 263
           + V ++T+I G C+N  ++ A  +K                             E   + 
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM + GL PD++TYT L++ +C EGDL+ AL +  EMI++G   D V +  LI+GF + 
Sbjct: 507 QEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQ 566

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVID-C--------------FCKNGDTKTGFRLL 368
            +  EA+R+L ++L     P++ TY  +ID C              FC  G      R+L
Sbjct: 567 SRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVL 626

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           + M   G+    E YN +++G  K G ++ A  L   ML  G  P  +T   L +     
Sbjct: 627 ESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHE 686

Query: 429 GNPEDFDKL 437
           G   + ++L
Sbjct: 687 GKEVELNQL 695



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 189/373 (50%), Gaps = 21/373 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L+ A++    +R        R    LID   +            E+++ G++P++  +
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L++  C  G+++DA  +  E  +RG     VS++T+I+G C+ + L++ F+LK  M  
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PDV TYS+LI GLCK+ RL +   L  EM   GL P++V +T+LI+ +C      +
Sbjct: 477 KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC------I 530

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI-----RKEMIKRGIE 307
            GD+ +A ++ DEM   G +PD +TY +L++GF K+   + A  +      +E +   I 
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 308 LD-------NVAFT---ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +       N+ F    AL+ GFC  G + EA+R+L  ML+ G K ++  Y ++I    K
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+ +  + L KEM   G  P   T  AL   L   G+    N LLD  L    + +   
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAAL 710

Query: 418 YNILLEGHCKHGN 430
             +L+  + K GN
Sbjct: 711 AKVLIGINSKEGN 723



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 13/369 (3%)

Query: 22  MHSQARDLLHLI--VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAI 79
           +H   R    LI   S++G    A      +   G     +  +AL+  +  LG ++DA 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 80  QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
              + + +  F         +I    R           +E++  G SP V  ++ L+  L
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           CK+ ++ +   +F E    GL    V++ +LIN +C   +LD+  RL   M   G  PD+
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDI 553

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID-------- 251
            TY+ LING  K++R  +A+ LL ++      PN++ + TLID +C N            
Sbjct: 554 VTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLID-NCNNLEFKSALALMKG 612

Query: 252 --MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             M G M EA ++++ M   G   ++  Y +++ G  K G++E A ++ KEM+  G    
Sbjct: 613 FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPH 672

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           +V   AL       GK VE  ++L   LK     + A   ++I    K G+    F +LK
Sbjct: 673 SVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLK 732

Query: 370 EMRSDGHLP 378
           +M   G LP
Sbjct: 733 DMALSGLLP 741


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 232/428 (54%), Gaps = 7/428 (1%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           F LT  +Y  +VH L   +M+  A   L  ++S + +     +F  +  TR   +PG  V
Sbjct: 125 FCLTTESYCLLVHILFYARMYFDANFFLKELISSRRILPGFDVFEVLWSTRNVCVPGFGV 184

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            DAL  V+++LG L++A QCF  + +      AR C   + R+ +T    ++  F+ +++
Sbjct: 185 FDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMV 244

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G + SV+ +N+++  +CKEG +  A+ +F +  + GL    V++N+LI+G+ K   LD
Sbjct: 245 GAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLD 304

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E F L   M+  G  PDV TY+ALIN  CK  ++  A   LHEM   GL PN V ++TLI
Sbjct: 305 ESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLI 364

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK         +++A K + +M   GL+P++ TYT L+D  CK G L  AL +  EM
Sbjct: 365 DALCKEHM------LQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEM 418

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++  +  + V +T L+ G C+ G+++EAE + R M+K G+ P+  TYT ++    KN   
Sbjct: 419 LQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRV 478

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    LLKE++     P +  Y  ++ GLC   +L+    ++  M   G+  + + Y I 
Sbjct: 479 ENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIR 538

Query: 422 LEGHCKHG 429
           ++ + K G
Sbjct: 539 MDAYFKTG 546



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 168/323 (52%), Gaps = 7/323 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L      +V  +  L+  LCKEG++ +A+ +F    K G+     ++  L++GH K K
Sbjct: 417 EMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNK 476

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++    L   ++   ++PD+  Y  +I GLC +N+L++ E ++ EM   G+  N VI+T
Sbjct: 477 RVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYT 536

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
             +D + K G+        EA  ++ EMC  G+    +T+ +L+DG CK+G +E A+D  
Sbjct: 537 IRMDAYFKTGKT------VEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYF 590

Query: 299 KEMIKRGIELDNVAF-TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             M    ++ +NVA  TALI G C+   +  A+++  EM    + PD   YT +ID   K
Sbjct: 591 ARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLK 650

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           + D +    +   M   G    +  Y +L+ GL +   ++ A M L+ M+  G+VPD+I 
Sbjct: 651 HKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEIL 710

Query: 418 YNILLEGHCKHGNPEDFDKLQSE 440
              LL  + + G+ ++  +L  E
Sbjct: 711 CIRLLRKYYELGSIDEAIELHDE 733



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 147/331 (44%), Gaps = 44/331 (13%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P   VF+ L     + G +++A   F    +  +   A S N  +    K    D   + 
Sbjct: 180 PGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKF 239

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M G+G+   V+TY+ +I  +CKE                                  
Sbjct: 240 FRDMVGAGIAQSVFTYNIMIGYMCKE---------------------------------- 265

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GDM  A+ +  +M   GL PD +TY  L+DG+ K G L+ +  + +EM   G 
Sbjct: 266 -------GDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGC 318

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E D + + ALI+ FC+  ++ +A   L EM   GLKP+  TY+ +ID  CK    +   +
Sbjct: 319 EPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIK 378

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L +MR  G  P   TY +L++  CK G L +A  L D ML + V  + +TY  LL+G C
Sbjct: 379 FLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLC 438

Query: 427 KHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           K G     ED  +   + G+  +   YT+LV
Sbjct: 439 KEGRMMEAEDLFRAMIKAGVTPNLKTYTALV 469



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   +  ++ + M    K GK  +A  +  E    G+  T V+F  LI+G CK   ++E 
Sbjct: 527 GIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEA 586

Query: 184 FRLKSVMEGSGMRPD-VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
               + M    ++P+ V   +ALI+GLCK N ++ A+ L  EM ++ + P+ + +T LID
Sbjct: 587 IDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALID 646

Query: 243 GHCKNGRIDMAGDMK-----------------------------EARKIVDEMCTNGLNP 273
           G+ K+     A +++                             +AR  ++EM   G+ P
Sbjct: 647 GNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVP 706

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           D+I    LL  + + G ++ A+++  E++K+ + LD +
Sbjct: 707 DEILCIRLLRKYYELGSIDEAIELHDELLKK-VPLDEL 743


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/461 (30%), Positives = 235/461 (50%), Gaps = 35/461 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET---RGTHL 57
           P+F+ +  + S MVHFLV  +  S+A+  +  +V K G+ S   +  S++ T    G+  
Sbjct: 129 PNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKSGV-SRVKVVESLISTCFYFGS-- 185

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
            GL+ D L+  YV    L +  + F++LR+    +    C  L+  ++RT    +    Y
Sbjct: 186 VGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIY 245

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E++  G   +VY  N++++ LCK+ K ++      +   +G+ A  V++NTLIN +C+ 
Sbjct: 246 GEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCRE 305

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             ++E F+L +     GM P + TY+A++ GLCK  + D A+ +L EM + GLTPN   +
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
            TL+   C+   I  A                             G + +A     EM  
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +G+ PD + YTIL+DGFC+ G L  AL +R EM+ RG  +D V +   ++G C+     +
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ +  EM++ G+ PD  T+T +I  +CK+G+      L + M      P   TYN L++
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           G CK G++  A  L D M+   ++PD I+Y  +L G C  G
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586



 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 198/396 (50%), Gaps = 67/396 (16%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI-----N 172
           +E+L  G +P+   +N L+ ++C+   I +AQ +FDE  +RG+    VSF++LI     N
Sbjct: 351 IEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARN 410

Query: 173 GH------------------------------CKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
           GH                              C+   L +  +++  M   G   DV TY
Sbjct: 411 GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTY 470

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------- 253
           +  +NGLCK+    DA++L +EM ERG+ P+   FTTLI G+CK+G +D A         
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVR 530

Query: 254 --------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
                               G+M  A+++ D+M    + PD I+Y  +L+GFC  G L  
Sbjct: 531 TNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPE 590

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL++  +M+++GI  + V    LI G+CR G + +A   L +M+  G+ PD  +Y  +ID
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            + K  + +  F L+ EM   G    + TYN ++NG C  G+++ A  +L  M+++G+ P
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINP 710

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           D  TY+ L+ GH    N ++  +   E   +GLV D
Sbjct: 711 DGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 7/365 (1%)

Query: 52  TRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
           +R   LP LV   +L+ V    G L  A+  FR + +            LID   R    
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           +  L    E+L  G    V  +N  ++ LCK+    DA M+F+E  +RG+     +F TL
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I G+CK  N+D+   L   M  + ++PD  TY+ LI+G CK   +  A+ L  +M  + +
Sbjct: 509 IRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDI 568

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ + + T+++G C +G       + EA  + D+M   G+ P+ +T   L+ G+C+ GD
Sbjct: 569 IPDHISYGTVLNGFCSSGL------LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A +   +MI  GI  D+ ++  LI G+ +   + +A  ++ EM K GL+ +  TY +
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +++ FC  G  +   ++L++M   G  P   TY++L+NG      +K A    D ML  G
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742

Query: 411 VVPDD 415
           +VPDD
Sbjct: 743 LVPDD 747


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 243/474 (51%), Gaps = 22/474 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           F+ ++ +Y  + H L   +M+  A  +L  +V  K   +   +F  +  TR   +PG  V
Sbjct: 138 FKHSVESYCIVAHILFCARMYYDANSVLKEMVLSK---ADCDVFDVLWSTRNVCVPGFGV 194

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            DAL  V +DLG L++AIQCF  +++       R C  L+ R  +         F+ +++
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G  P+V+ +N+++  +CKEG ++ A+ +F+E   RGL    V++N++I+G  K   LD
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +       M+     PDV TY+ALIN  CK  +L        EM   GL PN V ++TL+
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 374

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK G       M++A K   +M   GL P++ TYT L+D  CK G+L  A  +  EM
Sbjct: 375 DAFCKEGM------MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM 428

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G+E + V +TALI G C   ++ EAE +  +M   G+ P+ A+Y  +I  F K  + 
Sbjct: 429 LQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNM 488

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                LL E++  G  P +  Y   + GLC   +++ A ++++ M + G+  + + Y  L
Sbjct: 489 DRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTL 548

Query: 422 LEGHCKHGNP-------EDFDKLQSEKGLVS-----DYACYTSLVSKSSKYRQK 463
           ++ + K GNP       ++  +L  E  +V+     D  C   LVSK+  Y  +
Sbjct: 549 MDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 170/322 (52%), Gaps = 7/322 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G   +V  +  L+  LC   ++K+A+ +F +    G+     S+N LI+G  KAK
Sbjct: 427 EMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAK 486

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D    L + ++G G++PD+  Y   I GLC   +++ A+++++EM E G+  N +I+T
Sbjct: 487 NMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYT 546

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+D + K      +G+  E   ++DEM    +    +T+ +L+DG CK   +  A+D  
Sbjct: 547 TLMDAYFK------SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 600

Query: 299 KEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +    G++ +   FTA+I G C+  +V  A  +  +M++ GL PD   YT ++D   K
Sbjct: 601 NRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFK 660

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+      L  +M   G    +  Y +L+ GL    QL+ A   L+ M+  G+ PD++ 
Sbjct: 661 QGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVL 720

Query: 418 YNILLEGHCKHGNPEDFDKLQS 439
              +L+ H + G  ++  +LQS
Sbjct: 721 CISVLKKHYELGCIDEAVELQS 742



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 7/228 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G   +  ++  LM    K G   +   + DE  +  +  T V+F  LI+G CK K
Sbjct: 532 EMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNK 591

Query: 179 NLDEGF-RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            + +       +    G++ +   ++A+I+GLCK+N+++ A  L  +M ++GL P+   +
Sbjct: 592 LVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAY 651

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T+L+DG+ K G +       EA  + D+M   G+  D + YT L+ G      L+ A   
Sbjct: 652 TSLMDGNFKQGNV------LEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 705

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            +EMI  GI  D V   +++      G + EA  +   ++K  L   D
Sbjct: 706 LEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSD 753



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 126/274 (45%), Gaps = 25/274 (9%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG---------------------SSAS 44
            L +Y+ ++H  V  K   +A +LL+ +   KG G                      +A 
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNEL---KGRGIKPDLLLYGTFIWGLCSLEKIEAAK 527

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
           +  + ++  G     L+   LM  Y   G   + +     +++    +       LID +
Sbjct: 528 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587

Query: 105 MRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
            +  L +  + ++  I  D+G   +  +F  ++  LCK+ +++ A  +F++  ++GL   
Sbjct: 588 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             ++ +L++G+ K  N+ E   L+  M   GM+ D+  Y++L+ GL   N+L  A   L 
Sbjct: 648 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           EM   G+ P++V+  +++  H + G ID A +++
Sbjct: 708 EMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQ 741


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 211/377 (55%), Gaps = 36/377 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           G +P+VY +N+L+  LC  G+ ++A  +V D+    G     V++NTL+   C+A  +D 
Sbjct: 149 GVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDA 208

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL  VM   G+RP + T++ ++NGLCK  R++DA  +  EM   GLTP+ V + TL+ 
Sbjct: 209 AERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVS 268

Query: 243 GHCKNGRID-----------------------------MAGDMKEARKIVDEMCTNGLNP 273
           G+CK G +                               AG+++ A  +V +M   GL  
Sbjct: 269 GYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRM 328

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           ++ T+T L+DGFC+ G L+ AL   KEM +  I+   V +  LI+G+C+ G++ EA  ++
Sbjct: 329 NEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELI 388

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EM   G+KPD  TY+ ++  +CK GDT + F L ++M   G +P   TY++L+ GLC+ 
Sbjct: 389 HEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEE 448

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
            +L +A  L + ML LG+ PD+ TY  L++GHCK GN +    L  E   KG++ D   Y
Sbjct: 449 RRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTY 508

Query: 451 TSLV---SKSSKYRQKR 464
           + L+   SKS++ ++ +
Sbjct: 509 SVLIDGLSKSARTKEAQ 525



 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 192/332 (57%), Gaps = 31/332 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PS+  FN +++ LCK G+++DA+ +FDE  + GL    VS+NTL++G+CKA  L E 
Sbjct: 220 GVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEA 279

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M   G+ PDV T+++LI+ +C+   L+ A  L+ +M ERGL  N+  FT LIDG
Sbjct: 280 LAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDG 339

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            C+NG +D A                             G M EAR+++ EM   G+ PD
Sbjct: 340 FCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPD 399

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY+ +L G+CK GD +SA ++ ++M+K+G+  D + +++LI G C   ++ +A  +  
Sbjct: 400 VVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFE 459

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +ML++GL+PD+ TYT +ID  CK G+ +    L  EM   G LP V TY+ L++GL K  
Sbjct: 460 KMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSA 519

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + K A  LL  +     VPD+I Y  L+  HC
Sbjct: 520 RTKEAQRLLFKLYYEDPVPDNIKYEALM--HC 549



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 173/333 (51%), Gaps = 21/333 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+   G  P V  F  L+H +C+ G ++ A  +  +  +RGL     +F  LI+
Sbjct: 279 ALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   LD+       M    ++P V  Y+ LING CK  R+D+A  L+HEM  +G+ P
Sbjct: 339 GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++T++ G+CK G  D A ++        +M   G+ PD ITY+ L+ G C+E  L 
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNR------KMLKKGVVPDAITYSSLIRGLCEERRLG 452

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++ ++M++ G++ D   +T LI G C+ G V +A  +  EM+K G+ PD  TY+++I
Sbjct: 453 DACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLI 512

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN---------------GLCKHGQLK 397
           D   K+  TK   RLL ++  +  +P    Y ALM+               G    G + 
Sbjct: 513 DGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMN 572

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            A+ +  +MLD     D   Y++L+ GHC+ GN
Sbjct: 573 QADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGN 605



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 173/335 (51%), Gaps = 46/335 (13%)

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL--------- 209
           G   + +++N ++     A +L    RL + M   G+ P+VYTY+ L+  L         
Sbjct: 115 GYAPSLLAYNAVLLALSDA-SLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 210 ---------------------------CKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
                                      C+   +D AE L+  M E G+ P+ V F T+++
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK GR      M++ARK+ DEM   GL PD ++Y  L+ G+CK G L  AL +  EM 
Sbjct: 234 GLCKAGR------MEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMA 287

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++G+  D V FT+LI   CR G +  A  ++ +M + GL+ ++ T+T +ID FC+NG   
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
                +KEMR     P+V  YN L+NG CK G++  A  L+  M   G+ PD +TY+ +L
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTIL 407

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
            G+CK G+ +   + ++   +KG+V D   Y+SL+
Sbjct: 408 SGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLI 442



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 192/401 (47%), Gaps = 25/401 (6%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L+ A+     +R+   R+       LID   R       L    E+ +    PSV  +
Sbjct: 309 GNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCY 368

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           NVL++  CK G++ +A+ +  E   +G+    V+++T+++G+CK  + D  F L   M  
Sbjct: 369 NVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLK 428

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PD  TYS+LI GLC+E RL DA  L  +M + GL P++  +TTLIDGHCK G +  
Sbjct: 429 KGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNV-- 486

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
               ++A  + DEM   G+ PD +TY++L+DG  K    + A  +  ++       DN+ 
Sbjct: 487 ----QKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIK 542

Query: 313 F---------------TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           +                AL+ GF   G + +A+++ + ML    K D + Y+++I   C+
Sbjct: 543 YEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCR 602

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+        K++   G  P   +  +L+ GL + G    A+ ++  +L+   + D  T
Sbjct: 603 GGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADAET 662

Query: 418 YNILLEGHCKHG----NPEDFDKLQSEKGLVSDYACYTSLV 454
              L++ + K G      +    +Q     V  + C  S+V
Sbjct: 663 SKALIDLNRKEGVGYFQAQGELCMQKPALFVEHWNCMMSIV 703



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 134/270 (49%), Gaps = 11/270 (4%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G  P +  Y+A++  L  +  L  A  LL  M   G+ PN   +  L+   C  G+    
Sbjct: 115 GYAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQ---- 169

Query: 254 GDMKEARKIV-DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              +EA  +V D+M   G  P+ +TY  L+  FC+ G++++A  +   M + G+    V 
Sbjct: 170 --REEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVT 227

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  +++G C+ G++ +A +M  EM + GL PD  +Y  ++  +CK G       +  EM 
Sbjct: 228 FNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMA 287

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G +P V T+ +L++ +C+ G L+ A  L+  M + G+  ++ T+  L++G C++G  +
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347

Query: 433 D---FDKLQSEKGLVSDYACYTSLVSKSSK 459
           D     K   E  +     CY  L++   K
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGYCK 377


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 255/491 (51%), Gaps = 43/491 (8%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGM--GSSASLFASIL----ETRGTHLPG 59
           +L +   +V   VA K    A  L+     K  +  G+S   F   L    +  G H   
Sbjct: 124 SLESLCIVVQIAVASKDLRMAHRLVFEFWEKPHLDVGNSFDRFTERLIYTYKDWGAH--P 181

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF--Y 117
           LV D    V V+ G L +A + F  L  +   +    C   + R+   +   +   F  +
Sbjct: 182 LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARL-SNSFDGIRTAFRVF 240

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E  + G   +   +N+++H LC+ GK+K+A  +  +   RG     VS++ +++G+C+ 
Sbjct: 241 REYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQV 300

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + L +  +L   ++  G++P+ YTY+++I+ LCK  R+ +AE +L  M  + + P++V++
Sbjct: 301 EQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVY 360

Query: 238 TTLIDGHCKNGRIDM-----------------------------AGDMKEARKIVDEMCT 268
           TTLI G  K+G + +                             AG + EARK+  EM +
Sbjct: 361 TTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLS 420

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL PD++TYT L+DG+CK G+++ A  +  +M+++G+  + V +TAL+ G C+ G+V  
Sbjct: 421 KGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDI 480

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L EM + GL+P+  TY  +I+  CK G+ +   +L++EM   G  P   TY  +M+
Sbjct: 481 ANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMD 540

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVS 445
             CK G++  A+ LL  MLD G+ P  +T+N+L+ G C  G  ED ++L     +KG++ 
Sbjct: 541 AYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMP 600

Query: 446 DYACYTSLVSK 456
           +   + SL+ +
Sbjct: 601 NATTFNSLMKQ 611



 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 197/349 (56%), Gaps = 9/349 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G  P+ Y +N ++  LCK G++ +A+ V      + +    V + TLI+G  K+ 
Sbjct: 312 ELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSG 371

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+   ++L   M+   + PD  TY+++I+GLC+  ++ +A  L  EM  +GL P++V +T
Sbjct: 372 NVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYT 431

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDG+CK      AG+MKEA  + ++M   GL P+ +TYT L+DG CK G+++ A ++ 
Sbjct: 432 ALIDGYCK------AGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELL 485

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM ++G++ +   + ALI+G C+ G + +A +++ EM   G  PD  TYT ++D +CK 
Sbjct: 486 HEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKM 545

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+      LL+ M   G  P + T+N LMNG C  G L++   L+  MLD G++P+  T+
Sbjct: 546 GEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTF 605

Query: 419 NILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           N L++ +C   N     +  K    +G+V D   Y  L+    K R  +
Sbjct: 606 NSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMK 654



 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 184/331 (55%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +  ++H LC+ GK+ +A+ +F E   +GL    V++  LI+G+CKA  + E F L
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G+ P+V TY+AL++GLCK   +D A  LLHEM E+GL PN   +  LI+G CK
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCK 509

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G++++A K+++EM   G  PD ITYT ++D +CK G++  A ++ + M+ +G+
Sbjct: 510 ------VGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGL 563

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +   V F  L++GFC  G + + ER+++ ML  G+ P+  T+  ++  +C   + +    
Sbjct: 564 QPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIE 623

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + K M + G +P   TYN L+ G CK   +K A  L   M++ G      +YN L++G  
Sbjct: 624 IYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFY 683

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K    E+  KL  E    G +++   Y   V
Sbjct: 684 KRKKFEEARKLFEEMRTHGFIAEKEIYDIFV 714



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 164/317 (51%), Gaps = 6/317 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+L  G  P    +  L+   CK G++K+A  + ++  ++GL    V++  L++G CK
Sbjct: 415 FSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCK 474

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +D    L   M   G++P+V TY+ALINGLCK   ++ A  L+ EM   G  P+ + 
Sbjct: 475 CGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTIT 534

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +TT++D +CK       G+M +A +++  M   GL P  +T+ +L++GFC  G LE    
Sbjct: 535 YTTIMDAYCK------MGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGER 588

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + K M+ +GI  +   F +L+  +C    +     + + M   G+ PD  TY ++I   C
Sbjct: 589 LIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHC 648

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K  + K  + L KEM   G      +YN+L+ G  K  + + A  L + M   G + +  
Sbjct: 649 KARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKE 708

Query: 417 TYNILLEGHCKHGNPED 433
            Y+I ++ + + GN E+
Sbjct: 709 IYDIFVDVNYEEGNWEN 725



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G +P+V  +  L+  LCK G++  A  +  E  ++GL     ++N LING CK  
Sbjct: 452 QMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVG 511

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+++  +L   M+ +G  PD  TY+ +++  CK   +  A  LL  M ++GL P  V F 
Sbjct: 512 NIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFN 571

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C      M+G +++  +++  M   G+ P+  T+  L+  +C   ++ + ++I 
Sbjct: 572 VLMNGFC------MSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIY 625

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M  +G+  D   +  LI G C+   + EA  + +EM++ G     A+Y  +I  F K 
Sbjct: 626 KGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKR 685

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
              +   +L +EMR+ G +   E Y+  ++   + G  +N   L D  ++
Sbjct: 686 KKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIE 735



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 6/185 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +LD G  P++  FNVLM+  C  G ++D + +      +G+   A +FN+L+  +C   N
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNN 617

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +     +   M   G+ PD  TY+ LI G CK   + +A  L  EM E+G +     + +
Sbjct: 618 MRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNS 677

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G  K  + +      EARK+ +EM T+G   +K  Y I +D   +EG+ E+ L++  
Sbjct: 678 LIKGFYKRKKFE------EARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCD 731

Query: 300 EMIKR 304
           E I++
Sbjct: 732 EAIEK 736



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 21/225 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA--LM 66
            Y+T++         ++A +LL +++ K G+  +   F  ++   G  + G++ D   L+
Sbjct: 534 TYTTIMDAYCKMGEMAKAHELLRIMLDK-GLQPTIVTFNVLMN--GFCMSGMLEDGERLI 590

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
              +D G + +A   F  L K Y         C+ + M        T+  Y  +   G  
Sbjct: 591 KWMLDKGIMPNA-TTFNSLMKQY---------CIRNNM------RATIEIYKGMHAQGVV 634

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +N+L+   CK   +K+A  +  E  ++G   TA S+N+LI G  K K  +E  +L
Sbjct: 635 PDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKL 694

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
              M   G   +   Y   ++   +E   ++   L  E  E+ L 
Sbjct: 695 FEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCLV 739


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 225/430 (52%), Gaps = 11/430 (2%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---HLPGLVLD 63
           L   S +   L     +  A DL+  I+  +   S  ++  SI++   +       ++ D
Sbjct: 92  LDVLSALAVNLCNSNWYGPASDLIKCII--RNSDSPLAVLGSIVKCYRSCNGSPNSVIFD 149

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            LM  Y  +GFL +A+  F   +   FR     C  L+  +++ N   +    +  +  +
Sbjct: 150 MLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAH 209

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
              P VY +  ++   CK G +KDA+ V  E G++G     V++N +I G C+A+ LDE 
Sbjct: 210 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEA 269

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             LK  M   G+ PD+YTY  LING C E R  +A+L+L EM + GL P  + +  LIDG
Sbjct: 270 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 329

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G      D+++A +I DEM   G+  + I +  LL+G CK G +E AL+I +EM++
Sbjct: 330 FMRQG------DIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME 383

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+E D+  ++ LI G CRG  +  A  +L EM K  L P   TY+++I+  C+ G+ + 
Sbjct: 384 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQG 443

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +L+EM  +G  P    Y  LM    K G+++ + M+L+ M + G++PD   YN L+ 
Sbjct: 444 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLII 503

Query: 424 GHCKHGNPED 433
           G CK    E+
Sbjct: 504 GFCKAKRMEE 513



 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 193/337 (57%), Gaps = 10/337 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  ++VL+H L + GK+ +A  +F E  ++GL   A ++N+LI+G CK  N+D+  +L  
Sbjct: 600 VQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE 659

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ PD+ TY+ LI+GLCK   ++ A+ L  ++  RGLTPN V +  ++DG+CK  
Sbjct: 660 EMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK-- 717

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
               + +   A ++++EM   G+ PD   Y ++L+  CKE   E ALD+ +EM+++G   
Sbjct: 718 ----SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA- 772

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V+F  LI G+C+ GK+ EA  +L EM++    P+  TYT +ID  CK G      RL 
Sbjct: 773 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 832

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM+    +P  +TY +L++G    G +   + L + M+  G+ PD +TY ++++ +C+ 
Sbjct: 833 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCRE 892

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           GN  +  KL+ E   KG+    A Y +L+    K  +
Sbjct: 893 GNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEE 929



 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 193/358 (53%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +       +  +L   ++ + PS+   N L+  L K  K++    VFD      
Sbjct: 151 LMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHK 210

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     ++  +I+ HCK  N+ +  R+   M   G  P++ TY+ +I GLC+   LD+A 
Sbjct: 211 VLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAI 270

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M ++GL P+   +  LI+G C   R       +EA+ ++ EM   GL P+ ITY 
Sbjct: 271 ELKRSMVDKGLVPDLYTYDILINGFCMEKR------SREAKLMLLEMIDVGLKPEPITYN 324

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DGF ++GD+E A  I+ EM+  GIE + + +  L++G C+ GK+ +A  +++EM++ 
Sbjct: 325 ALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEK 384

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++PD  TY+++I+  C+  +    F LL EM+     P V TY+ ++NGLC+ G L+  
Sbjct: 385 GVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGT 444

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           N +L  M+  G+ P+ + Y  L+  H K G  E+   +     E+G++ D  CY SL+
Sbjct: 445 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLI 502



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 182/333 (54%), Gaps = 9/333 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+V  ++V+++ LC+ G ++    +  E    GL   AV + TL+  H K   ++E   
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 481

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ PDV+ Y++LI G CK  R+++A   L EM ER L PN   +   IDG+ 
Sbjct: 482 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 541

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K      AG+M+ A +  +EM + G+ P+   YT L++G CKEG++  A  + + ++ R 
Sbjct: 542 K------AGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 595

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D   ++ LI G  R GK+ EA  +  E+ + GL P+  TY  +I   CK G+     
Sbjct: 596 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKAS 655

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +LL+EM   G  P + TYN L++GLCK G+++ A  L D +   G+ P+ +TY  +++G+
Sbjct: 656 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           CK  NP    +L  E   +G+  D   Y  +++
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN 748



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 184/378 (48%), Gaps = 43/378 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+  V+  LM    KEG++++++M+ +   ++G+      +N+LI G CKAK
Sbjct: 450 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAK 509

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++E       M    +RP+ +TY A I+G  K   ++ A+   +EM   G+ PN  I+T
Sbjct: 510 RMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYT 569

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+GHCK G +       EA  +   + +  +  D  TY++L+ G  + G +  A  I 
Sbjct: 570 ALIEGHCKEGNV------TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIF 623

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E+ ++G+  +   + +LISG C+ G V +A ++L EM   G+ PD  TY ++ID  CK 
Sbjct: 624 SELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA 683

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    L  ++   G  P   TY A+++G CK      A  LL+ ML  GV PD   Y
Sbjct: 684 GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 743

Query: 419 NI----------------------------------LLEGHCKHGNPEDFDKLQS---EK 441
           N+                                  L+EG+CK G  ++ + L     EK
Sbjct: 744 NVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK 803

Query: 442 GLVSDYACYTSLVSKSSK 459
             + ++  YTSL+  + K
Sbjct: 804 QFIPNHVTYTSLIDHNCK 821



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 170/343 (49%), Gaps = 30/343 (8%)

Query: 124  GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
            G +P +  +N+L+  LCK G+I+ A+ +FD+   RGL    V++  +++G+CK+KN    
Sbjct: 665  GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 724

Query: 184  FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            F+L   M   G+ PD + Y+ ++N  CKE + + A  L  EM E+G   + V F TLI+G
Sbjct: 725  FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEG 783

Query: 244  HCKNGRID-----------------------------MAGDMKEARKIVDEMCTNGLNPD 274
            +CK+G++                               AG M EA+++  EM    + P 
Sbjct: 784  YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 843

Query: 275  KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
              TYT LL G+   G++     + +EM+ +GIE D + +  +I  +CR G V+EA ++  
Sbjct: 844  AKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKD 903

Query: 335  EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            E+L  G+    A Y  +I   CK  +     +LL E+   G    + T + +  G    G
Sbjct: 904  EILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAG 963

Query: 395  QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             +  A  +L +M+  G V +  +   L++G+    N ED D L
Sbjct: 964  NMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNL 1006



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 189/387 (48%), Gaps = 8/387 (2%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP + +  AL+  +   G + +A   FR +         +    LI  + R        G
Sbjct: 562 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 621

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+ + G  P+ + +N L+   CK+G +  A  + +E   +G++   V++N LI+G C
Sbjct: 622 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 681

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  ++    L   +EG G+ P+  TY+A+++G CK      A  LL EM  RG+ P+  
Sbjct: 682 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAF 741

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           I+  +++  CK  + + A D+        EM   G     +++  L++G+CK G L+ A 
Sbjct: 742 IYNVILNFCCKEEKFEKALDL------FQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEAN 794

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + +EMI++    ++V +T+LI   C+ G + EA+R+  EM +  + P   TYT ++  +
Sbjct: 795 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 854

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
              G+      L +EM + G  P   TY  +++  C+ G +  A  L D +L  G+    
Sbjct: 855 HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSV 914

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSEKG 442
             Y+ L++  CK     +  KL +E G
Sbjct: 915 AAYDALIQALCKKEEFFEVLKLLNEIG 941



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           ++V F  L+  + + G +VEA  +         +P   +   ++    K    +  +++ 
Sbjct: 144 NSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVF 203

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M +   LP V TY  +++  CK G +K+A  +L  M + G  P+ +TYN+++ G C+ 
Sbjct: 204 DGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRA 263

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVS 455
              ++  +L+    +KGLV D   Y  L++
Sbjct: 264 RLLDEAIELKRSMVDKGLVPDLYTYDILIN 293


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 147/471 (31%), Positives = 242/471 (51%), Gaps = 22/471 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           F+ ++ +Y  + H L   +M+  A  +L  +V  K   +   +F  +  TR   +PG  V
Sbjct: 6   FKHSVESYCIVAHILFCARMYYDANSVLKEMVLSK---ADCDVFDVLWSTRNVCVPGFGV 62

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            DAL  V +DLG L++AIQCF  +++       R C  L+ R  +         F+ +++
Sbjct: 63  FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 122

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G  P+V+ +N+++  +CKEG ++ A+ +F+E   RGL    V++N++I+G  K   LD
Sbjct: 123 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 182

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +       M+     PDV TY+ALIN  CK  +L        EM   GL PN V ++TL+
Sbjct: 183 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 242

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK G       M++A K   +M   GL P++ TYT L+D  CK G+L  A  +  EM
Sbjct: 243 DAFCKEGM------MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM 296

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G+E + V +TALI G C   ++ EAE +  +M   G+ P+ A+Y  +I  F K  + 
Sbjct: 297 LQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNM 356

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                LL E++  G  P +  Y   + GLC   +++ A ++++ M + G+  + + Y  L
Sbjct: 357 DRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTL 416

Query: 422 LEGHCKHGNP-------EDFDKLQSEKGLVS-----DYACYTSLVSKSSKY 460
           ++ + K GNP       ++  +L  E  +V+     D  C   LVSK+  Y
Sbjct: 417 MDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDY 467



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 170/322 (52%), Gaps = 7/322 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G   +V  +  L+  LC   ++K+A+ +F +    G+     S+N LI+G  KAK
Sbjct: 295 EMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAK 354

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D    L + ++G G++PD+  Y   I GLC   +++ A+++++EM E G+  N +I+T
Sbjct: 355 NMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYT 414

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+D + K      +G+  E   ++DEM    +    +T+ +L+DG CK   +  A+D  
Sbjct: 415 TLMDAYFK------SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 468

Query: 299 KEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +    G++ +   FTA+I G C+  +V  A  +  +M++ GL PD   YT ++D   K
Sbjct: 469 NRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFK 528

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+      L  +M   G    +  Y +L+ GL    QL+ A   L+ M+  G+ PD++ 
Sbjct: 529 QGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVL 588

Query: 418 YNILLEGHCKHGNPEDFDKLQS 439
              +L+ H + G  ++  +LQS
Sbjct: 589 CISVLKKHYELGCIDEAVELQS 610



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 7/228 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G   +  ++  LM    K G   +   + DE  +  +  T V+F  LI+G CK K
Sbjct: 400 EMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNK 459

Query: 179 NLDEGF-RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            + +       +    G++ +   ++A+I+GLCK+N+++ A  L  +M ++GL P+   +
Sbjct: 460 LVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAY 519

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T+L+DG+ K G +       EA  + D+M   G+  D + YT L+ G      L+ A   
Sbjct: 520 TSLMDGNFKQGNV------LEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 573

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            +EMI  GI  D V   +++      G + EA  +   ++K  L   D
Sbjct: 574 LEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSD 621



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 126/274 (45%), Gaps = 25/274 (9%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG---------------------SSAS 44
            L +Y+ ++H  V  K   +A +LL+ +   KG G                      +A 
Sbjct: 339 NLASYNALIHGFVKAKNMDRALELLNEL---KGRGIKPDLLLYGTFIWGLCSLEKIEAAK 395

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
           +  + ++  G     L+   LM  Y   G   + +     +++    +       LID +
Sbjct: 396 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 455

Query: 105 MRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
            +  L +  + ++  I  D+G   +  +F  ++  LCK+ +++ A  +F++  ++GL   
Sbjct: 456 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 515

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             ++ +L++G+ K  N+ E   L+  M   GM+ D+  Y++L+ GL   N+L  A   L 
Sbjct: 516 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 575

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           EM   G+ P++V+  +++  H + G ID A +++
Sbjct: 576 EMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQ 609


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 234/471 (49%), Gaps = 19/471 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR    +Y  + H L     +  AR ++   +           F  +  TR    PG  V
Sbjct: 124 FRHAAESYCVLAHILFCGMFYLDARSVIKEWILLGREFPGCDFFDMLWSTRNVCRPGFGV 183

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            D L  V VDLG L++A QCF  + K       R C  L+ R+ +++   + L F+ +++
Sbjct: 184 FDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMV 243

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G SPSV+ +N+++  L +EG ++ A+ +F+E   +GL    V++N+LI+G+ K   L 
Sbjct: 244 VAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLT 303

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               +   M+ +G  PDV TY++LIN  CK  R+  A   LH M +RGL PN V ++TLI
Sbjct: 304 GAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLI 363

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK      AG + EA K   +M   GL P++ TYT L+D  CK GDL  A  +  EM
Sbjct: 364 DAFCK------AGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEM 417

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + G+ L+ V +TAL+ G C  G++ EAE +   +LK G   +   YT +   + K    
Sbjct: 418 QQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMM 477

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    +L+EM      P +  Y   + GLC+  +++++  ++  M+D G+  +   Y  L
Sbjct: 478 EKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTL 537

Query: 422 LEGHCKHGNPEDFDKLQSEK------------GLVSDYACYTSLVSKSSKY 460
           ++ + K G   +   L  E             G++ D  C   LV ++ +Y
Sbjct: 538 IDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRY 588



 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 195/342 (57%), Gaps = 9/342 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  ++ L+   CK G + +A   F +  + GL     ++ +LI+ +CK  +L+E 
Sbjct: 351 GLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEA 410

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+L+S M+ +G+  ++ TY+AL++GLC++ R+ +AE L   + + G T N  I+T+L  G
Sbjct: 411 FKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHG 470

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K      A  M++A  I++EM    L PD + Y   + G C++ ++E ++ + +EM+ 
Sbjct: 471 YIK------AKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMD 524

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  ++  +T LI  + + GK  EA  +L+EM  +G+K    TY ++ID  CK G  + 
Sbjct: 525 CGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQ 584

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R    M  +G  P +  Y AL++GLCK+  L+ A  L + MLD G+ PD + Y  L++
Sbjct: 585 AVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLID 644

Query: 424 GHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYRQ 462
           G+ KHGNP +   L++   E G+  D   YTSL+   S+Y Q
Sbjct: 645 GNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQ 686



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 175/330 (53%), Gaps = 9/330 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G + ++  +  L+  LC++G++++A+ +F    K G       + +L +G+ KAK
Sbjct: 416 EMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAK 475

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++   +   M    ++PD+  Y   I GLC++N ++D+  ++ EM + GLT N  I+T
Sbjct: 476 MMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYT 535

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLID + K G+        EA  ++ EM   G+    +TY +L+DG CK G ++ A+   
Sbjct: 536 TLIDAYFKVGKT------TEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYF 589

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M + G++ + + +TALI G C+   + EA+ +  EML  G+ PD   YT +ID   K+
Sbjct: 590 DHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKH 649

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+      L   M   G    +  Y +L+ G  ++GQ++ A  LLD ML  G++PD +  
Sbjct: 650 GNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLC 709

Query: 419 NILLEGHCKHGNPEDFDKLQ---SEKGLVS 445
             LL  + + G+  +   L    + +GL+S
Sbjct: 710 ICLLRKYYELGDINEALALHDDMARRGLIS 739



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 138/304 (45%), Gaps = 23/304 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           + L    Y+++ H  +  KM  +A D+L  + +KK +     L+       GT + GL  
Sbjct: 457 WTLNQQIYTSLFHGYIKAKMMEKAMDILEEM-NKKNLKPDLLLY-------GTKIWGLCR 508

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
                       ++D++   R +        +     LID   +    T  +    E+ D
Sbjct: 509 Q---------NEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQD 559

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G   +V  + VL+  LCK G ++ A   FD   + GL    + +  LI+G CK   L+E
Sbjct: 560 LGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEE 619

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + M   G+ PD   Y++LI+G  K     +A  L + M E G+  +   +T+LI 
Sbjct: 620 AKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIW 679

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  + G++ +      A+ ++DEM   G+ PD++    LL  + + GD+  AL +  +M 
Sbjct: 680 GFSRYGQVQL------AKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMA 733

Query: 303 KRGI 306
           +RG+
Sbjct: 734 RRGL 737



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 45/222 (20%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G+++D L      +G +  A++ F  + ++  +        LID + + +        + 
Sbjct: 570 GVLIDGL----CKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFN 625

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+LD G SP   V                                   + +LI+G+ K  
Sbjct: 626 EMLDKGISPDKLV-----------------------------------YTSLIDGNMKHG 650

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N  E   L++ M   GM  D+  Y++LI G  +  ++  A+ LL EM  +G+ P+ V+  
Sbjct: 651 NPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCI 710

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
            L+  + +       GD+ EA  + D+M   GL    I  T+
Sbjct: 711 CLLRKYYE------LGDINEALALHDDMARRGLISGTIDITV 746


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/493 (31%), Positives = 258/493 (52%), Gaps = 55/493 (11%)

Query: 8   HAYSTMVHFLVAHKMHSQ---ARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           HA S ++  +++ K+HSQ   +  LLH +   +   +   L+  I+    +++    L+ 
Sbjct: 57  HAQSLLLQ-VISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVII---NSYVQSQSLN- 111

Query: 65  LMIVY----VDLGFLDDAIQCFR--------------------------LLRKHYFRIPA 94
           L I Y    VD GF+  +  CF                           +L  + F I  
Sbjct: 112 LSISYFNEMVDNGFVPGS-NCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILI 170

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           +GC C    + ++          +E+ ++G+SP+V ++  L+   CK+G+I+ A+ +F E
Sbjct: 171 KGC-CEAGEIEKS------FDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
            GK GL A   ++  LING  K     +GF +   M+  G+ P++YTY+ ++N LCK+ R
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
             DA  +  EM ERG++ N V + TLI G C+  +++      EA K+VD+M ++G+NP+
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLN------EANKVVDQMKSDGINPN 337

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ITY  L+DGFC  G L  AL + +++  RG+    V +  L+SGFCR G    A +M++
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVK 397

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM + G+KP   TYT++ID F ++ + +   +L   M   G +P V TY+ L++G C  G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKG 457

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYT 451
           Q+  A+ L  +M++    P+++ YN ++ G+CK G+     KL     EK L  + A Y 
Sbjct: 458 QMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYR 517

Query: 452 SLVSKSSKYRQKR 464
            ++    K R+ +
Sbjct: 518 YMIEVLCKERKSK 530



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 179/320 (55%), Gaps = 6/320 (1%)

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           R    LI+ + +  +       Y ++ + G  P++Y +N +M++LCK+G+ KDA  VFDE
Sbjct: 234 RTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             +RG+    V++NTLI G C+   L+E  ++   M+  G+ P++ TY+ LI+G C   +
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           L  A  L  ++  RGL+P+ V +  L+ G C+ G      D   A K+V EM   G+ P 
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG------DTSGAAKMVKEMEERGIKPS 407

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           K+TYTIL+D F +  ++E A+ +R  M + G+  D   ++ LI GFC  G++ EA R+ +
Sbjct: 408 KVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFK 467

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M++   +P++  Y  +I  +CK G +    +LLKEM      P V +Y  ++  LCK  
Sbjct: 468 SMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKER 527

Query: 395 QLKNANMLLDTMLDLGVVPD 414
           + K A  L++ M+D G+ P 
Sbjct: 528 KSKEAERLVEKMIDSGIDPS 547



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 74/141 (52%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R++     +   L + + G  P V+ ++VL+H  C +G++ +A  +F    ++ 
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V +NT+I G+CK  +     +L   ME   + P+V +Y  +I  LCKE +  +AE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533

Query: 220 LLLHEMCERGLTPNDVIFTTL 240
            L+ +M + G+ P+  I + +
Sbjct: 534 RLVEKMIDSGIDPSTSILSLI 554


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 217/379 (57%), Gaps = 36/379 (9%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++ +G +P+VY +N+L+  LC  G++++A  V  +    G    AV++NTL+   C+A  
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 180 LDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           LD   R+ S+M   G  +P++ T+++++NGLCK  R++ A  +  EM   GL P+ V + 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 239 TLIDGHCKNGRID-----------------------------MAGDMKEARKIVDEMCTN 269
           TL+ G+CK G +                               AG++++A  +V +M   
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL  +++T+T L+DGFCK+G L+ AL   +EM K GI+   V + ALI+G+C+ G++  A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++REM    +KPD  TY+ +I  +CK G+  + F+L ++M   G LP   TY++L+ G
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 300

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LC+  +L +A  L + ML LGV PD+ TY  L++GHCK GN E    L  E   KG++ D
Sbjct: 301 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360

Query: 447 YACYTSLV---SKSSKYRQ 462
              Y+ L+   SKS++ ++
Sbjct: 361 VVTYSVLINGLSKSARTKE 379



 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 185/304 (60%), Gaps = 6/304 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G +P V  +N L+   CK G + ++  VF E  +RGL    V+F +LI+  CKA 
Sbjct: 106 EMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAG 165

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL++   L + M   G+R +  T++ALI+G CK+  LDDA L + EM + G+ P+ V + 
Sbjct: 166 NLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYN 225

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G+CK GR+D+A      R+++ EM    + PD +TY+ ++ G+CK G+L+SA  + 
Sbjct: 226 ALINGYCKLGRMDLA------RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 279

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+K+G+  D + +++LI G C   ++ +A  +   ML++G++PD+ TYT +ID  CK 
Sbjct: 280 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 339

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    L  EM   G LP V TY+ L+NGL K  + K A+ LL  +     VPD+I Y
Sbjct: 340 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 399

Query: 419 NILL 422
           + L+
Sbjct: 400 DALM 403



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 182/360 (50%), Gaps = 24/360 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           +L  + E+   G  P V  F  L+H  CK G ++ A  +  +  +RGL    V+F  LI+
Sbjct: 135 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 194

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   LD+       M   G++P V  Y+ALING CK  R+D A  L+ EM  + + P
Sbjct: 195 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 254

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++T+I G+CK G +D A  + +      +M   G+ PD ITY+ L+ G C+E  L 
Sbjct: 255 DVVTYSTIISGYCKVGNLDSAFQLNQ------KMLKKGVLPDAITYSSLIRGLCEEKRLN 308

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++ + M++ G++ D   +T LI G C+ G V +A  +  EM++ G+ PD  TY+++I
Sbjct: 309 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 368

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM---------------NGLCKHGQLK 397
           +   K+  TK   RLL ++  +  +P    Y+ALM                G C  G +K
Sbjct: 369 NGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMK 428

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
            A+ +  +MLD     D   Y+IL+ GHC+ GN      F K     G   +     SLV
Sbjct: 429 EADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 488



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 194/417 (46%), Gaps = 57/417 (13%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+H       +  + +L A + E RG  +  +   AL+  +   GFLDDA+     +RK 
Sbjct: 157 LIHATCKAGNLEQAVALVAQMRE-RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK- 214

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                                              G  PSV  +N L++  CK G++  A
Sbjct: 215 ----------------------------------CGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           + +  E   + +    V+++T+I+G+CK  NLD  F+L   M   G+ PD  TYS+LI G
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 300

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC+E RL+DA  L   M + G+ P++  +TTLIDGHCK G ++      +A  + DEM  
Sbjct: 301 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE------KALSLHDEMIR 354

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF--------------- 313
            G+ PD +TY++L++G  K    + A  +  ++       DN+ +               
Sbjct: 355 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSV 414

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            AL+ GFC  G + EA+++ + ML    K D + Y+++I   C+ G+ +      K+M  
Sbjct: 415 VALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLR 474

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            G  P   +  +L+ GL + G +  A+  +  +L    + D      L++ + K GN
Sbjct: 475 SGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGN 531


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 226/431 (52%), Gaps = 11/431 (2%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           FR T  +Y  +VH L   +M+  A ++L  +V    +   + +F  +  TR   +PG  V
Sbjct: 5   FRHTTESYCILVHILFYARMYFHANNILKELVLSSWVLPGSDVFEILWTTRNVCVPGFGV 64

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRI--PARGCRCLIDRMMRTNLPTVTLGFYLE 119
            DAL  V V+LG L+ A QCF  LR   FR+   AR C   + R+ +     ++  F+ +
Sbjct: 65  FDALFSVLVELGMLEAAGQCF--LRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRD 122

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G +P+V+ +N+++  +CKEG +  A+ +F++  K GL    V++NTLI+G+ K   
Sbjct: 123 MVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGL 182

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LDE   L   M+  G  PDV TY+ALIN  CK   +  A     EM ++ L PN + ++T
Sbjct: 183 LDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYST 242

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LID  CK G + M      A K   +M   GL P++ TY+ L+D  CK G+L  A  +  
Sbjct: 243 LIDALCKEGMMQM------AIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLAD 296

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM++  ++L+ V +T L+ G C  G + EAE + R M K G+ P+   YT +I    K  
Sbjct: 297 EMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVR 356

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  L  EMR     P +  +  ++ GLC   +L+   +++  M + G+  + + Y 
Sbjct: 357 SMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYT 416

Query: 420 ILLEGHCKHGN 430
            L++ + K GN
Sbjct: 417 TLMDAYFKAGN 427



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 217/457 (47%), Gaps = 36/457 (7%)

Query: 34  VSKKG-MGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91
           V K+G M ++ SLF  + +   T  P +V  + L+  Y  +G LD+++  F  ++     
Sbjct: 142 VCKEGDMLTARSLFEQMKKMGLT--PDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCE 199

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
                   LI+   +         F+ E+ D    P+V  ++ L+  LCKEG ++ A   
Sbjct: 200 PDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKF 259

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           F +  + GL     ++++LI+ +CKA NL E F L   M    +  ++ TY+ L++GLC+
Sbjct: 260 FVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCE 319

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------ 253
           E  +++AE L   M + G+TPN   +T LI GH K   +D A                  
Sbjct: 320 EGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILL 379

Query: 254 -----------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
                        ++E + I+ EM  +G+  + + YT L+D + K G+   A+++ +EM 
Sbjct: 380 WGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMR 439

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G E+  V F ALI G C+ G V EA      M    L+P+ A YT +ID  CKN    
Sbjct: 440 DLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIG 499

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +L  EM+    +P    Y A+++G  KHG  + A  + + M+++G+  D   Y  L+
Sbjct: 500 DAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLV 559

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
            G  + G  +   K  +E   KG++ D    T L+ K
Sbjct: 560 WGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRK 596



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 177/329 (53%), Gaps = 9/329 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L      ++  +  L+  LC+EG + +A+ +F   GK G+     ++  LI+GH K +
Sbjct: 297 EMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVR 356

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++D+   L + M    ++PD+  +  ++ GLC E++L++ ++++ EM E G+  N VI+T
Sbjct: 357 SMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYT 416

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+D + K      AG+  EA  +++EM   G     +T+  L+DG CK G ++ A+   
Sbjct: 417 TLMDAYFK------AGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYF 470

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M    ++ +   +TALI G C+   + +A+++  EM    + PD   YT +ID   K+
Sbjct: 471 GRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKH 530

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    +  +M   G    +  Y +L+ GL + GQ++ A   L  M+  G++PD+   
Sbjct: 531 GNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLC 590

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLV 444
             LL  H + GN ++  +LQ+   EKGL+
Sbjct: 591 TRLLRKHYELGNIDEAIELQNELVEKGLI 619



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKK-------------GMGSSASL-----FAS 48
           L AY+ ++H  +  +   +A +L + +  K              G+ S + L       +
Sbjct: 342 LQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMT 401

Query: 49  ILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
            ++  G     ++   LM  Y   G   +AI     +R     +       LID + +  
Sbjct: 402 EMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRG 461

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           L    + ++  + D+   P+V V+  L+  LCK   I DA+ +FDE   + +    +++ 
Sbjct: 462 LVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYT 521

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            +I+G+ K  N  E   +++ M   G+  D+Y Y++L+ GL +  ++  A   L EM  +
Sbjct: 522 AMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGK 581

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           G+ P++ + T L+  H + G ID      EA ++ +E+   GL
Sbjct: 582 GIIPDETLCTRLLRKHYELGNID------EAIELQNELVEKGL 618


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 199/352 (56%), Gaps = 15/352 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G +P    FN +M  LCK GK + A  +     +R    +  ++NTLI+G CK +
Sbjct: 286 EMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQ 345

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D    L      SG  PDV TYS L +GLCK  R+D+A  L+ EM  +G TPN V + 
Sbjct: 346 NVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYN 405

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLIDG CK      A   ++A ++++ + ++G  PD +TYTI++DG CKEG L+ AL + 
Sbjct: 406 TLIDGLCK------ASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV 459

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M+KRG     + +TAL+ G CR G+V EA  + +EM+      D   Y  +++ +CK+
Sbjct: 460 EGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKS 519

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
             TK   +++  +R     P ++ YNALM+G CK G+L     + + M   G VP+  TY
Sbjct: 520 SRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTY 576

Query: 419 NILLEGHCKHGN-PEDFDKLQS--EKGLVSDYACYTSLVS---KSSKYRQKR 464
           NI+++G CKHG   E F  L+S    G V D   Y  ++    K+SK ++ R
Sbjct: 577 NIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 628



 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 178/343 (51%), Gaps = 33/343 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P V V+ +L    CK G++KDA  +F           A+++N +I+GHC+  + D  
Sbjct: 190 GFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDCDGA 245

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M    + PDV+TY+ LI+GLCK ++ D A  +LHEM +RG+TP+ V F +++DG
Sbjct: 246 LEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDG 305

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            CK G+ + A                              ++  A+ +VDE  ++G  PD
Sbjct: 306 LCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPD 365

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY+IL DG CK G ++ A ++ KEM  +G   + V +  LI G C+  K  +A  +L 
Sbjct: 366 VVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLE 425

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            ++  G  PD  TYT+++D  CK G      ++++ M   G  P+V TY ALM GLC+ G
Sbjct: 426 SLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 485

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           ++  A+ +   M+      D + Y  L+ G+CK    ++  K+
Sbjct: 486 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKV 528



 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 142/501 (28%), Positives = 231/501 (46%), Gaps = 56/501 (11%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           PH +L L   ST      +  +     DLL L      + S +++   + + RGT  P +
Sbjct: 45  PHRQLHL---STARKLARSESLQQDVLDLLGL------LQSGSNIRERLEQWRGTLQPAV 95

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V   L      L     AI  F       F+       C +  ++           +  +
Sbjct: 96  VSRVLQ----RLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERM 151

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT----------------- 163
           LD GY+P  Y +++++  LC+  +I  A  + D+   RG                     
Sbjct: 152 LDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRL 211

Query: 164 --------------AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
                         A+++N +I+GHC+  + D        M    + PDV+TY+ LI+GL
Sbjct: 212 KDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGL 271

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           CK ++ D A  +LHEM +RG+TP+ V F +++DG CK      AG  + A  ++  M   
Sbjct: 272 CKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCK------AGKFERAHSLLAVMAER 325

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P   TY  L+ G CK+ +++ A D+  E +  G   D V ++ L  G C+ G++ EA
Sbjct: 326 NCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEA 385

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +++EM   G  P+  TY  +ID  CK   T+  + LL+ + S G +P V TY  +++G
Sbjct: 386 FELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDG 445

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LCK G+L  A  +++ ML  G  P  ITY  L+EG C+ G  ++   +  E   K   +D
Sbjct: 446 LCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTAD 505

Query: 447 YACYTSLVS---KSSKYRQKR 464
              Y SLV+   KSS+ ++ +
Sbjct: 506 ALAYVSLVNGYCKSSRTKEAQ 526



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 186/344 (54%), Gaps = 10/344 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G +PSV  +  LM  LC+ G++ +A  +F E   +   A A+++ +L+NG+CK+  
Sbjct: 462 MLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSR 521

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E    + V++G    P +  Y+AL++G CKE RLD+   +  +M  RG  PN   +  
Sbjct: 522 TKEA---QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI 578

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++DG CK+G++D      EA   ++ M + G  PD ++Y I++DG  K    + A  +  
Sbjct: 579 VMDGLCKHGKVD------EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLD 632

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +MI+ GI  D V +  L++ FC+  +  +A  +L+ M+K G+ PD+ TY  +I    +  
Sbjct: 633 QMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTN 692

Query: 360 DTKTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                + L+ EM  +G +  A  TYN +++ LCK G LK A +L+D M   GV  + +TY
Sbjct: 693 RLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY 752

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           NI ++  CK G  ++   L SE   + D   YT+++    K  Q
Sbjct: 753 NIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQ 796



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 170/335 (50%), Gaps = 32/335 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G+ P V  +++L   LCK G+I +A  +  E   +G     V++NTLI+G CKA 
Sbjct: 356 EFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKAS 415

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++ + L   +  SG  PDV TY+ +++GLCKE RLD A  ++  M +RG TP+ + +T
Sbjct: 416 KTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYT 475

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            L++G C+ GR+D A                                KEA+K+VD +   
Sbjct: 476 ALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI--R 533

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  P    Y  L+DG+CKEG L+   ++ ++M  RG   +   +  ++ G C+ GKV EA
Sbjct: 534 G-TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 592

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
              L  M   G  PD  +Y ++ID   K    K   ++L +M   G  P   TYN LM  
Sbjct: 593 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 652

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            CK  +  +A  +L  M+  GV PD++TYN L+ G
Sbjct: 653 FCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 687



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 183/378 (48%), Gaps = 25/378 (6%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVT 113
           V +ALM  Y   G LD+    F         +  RGC         ++D + +       
Sbjct: 540 VYNALMDGYCKEGRLDEIPNVFE-------DMACRGCVPNIKTYNIVMDGLCKHGKVDEA 592

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
             F   +   G  P V  +N+++  L K  K K+A+ V D+  + G+   AV++NTL+  
Sbjct: 593 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 652

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK +  D+   +   M  +G+ PD  TY+ LI+GL + NRL DA  L+HEM   G   +
Sbjct: 653 FCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVS 712

Query: 234 D-VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
               + T+ID  CK G       +K+A  ++D M  +G+  + +TY I +D  CKEG L+
Sbjct: 713 ACTTYNTIIDRLCKEGC------LKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLD 766

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-GLKPDDATYTMV 351
            A  +  EM       D V++T +I G C+  ++  A ++ REM+ V GL     T+ ++
Sbjct: 767 EASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 823

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID F K         LL  M   G  P+V TYN ++  LCK  ++  A  L D M   G+
Sbjct: 824 IDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI 883

Query: 412 VPDDITYNILLEGHCKHG 429
           V   ++Y +L+ G C  G
Sbjct: 884 VASSVSYTVLIYGLCGQG 901



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 39/212 (18%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF---- 155
           +IDR+ +       L     +  +G   +   +N+ + +LCKEG++ +A  +  E     
Sbjct: 720 IIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR 779

Query: 156 -----------------------------GKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
                                          +GL  T+ +FN LI+   K K LDE   L
Sbjct: 780 DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTL 839

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M   G  P V TY+ +I  LCK +++D A  L  EM  RG+  + V +T LI G C 
Sbjct: 840 LGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCG 899

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
            GR       KEA ++++EM ++    D + +
Sbjct: 900 QGR------GKEALQVLEEMASSDCEIDDLKW 925


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 239/487 (49%), Gaps = 37/487 (7%)

Query: 14  VHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH-LPGLVLDALMIVYVDL 72
           +H L   K++  A+ L   +       S +S+F  + ++   +     V D ++  Y  L
Sbjct: 96  LHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHL 155

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG---FYLEILDYGYSPSV 129
             +D A+    L +   F         ++D ++R+   +V L     Y E++    SP+V
Sbjct: 156 NMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSR-GSVKLSAEEVYREMIRSRVSPNV 214

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y +N+L+   C  G+++     F E  + G     V++NTLI+ +CK   +DE F L   
Sbjct: 215 YTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKS 274

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   GM+P++ +Y+ +INGLC+E  + +A  +L EM  +G TP++V + TL++G+CK G 
Sbjct: 275 MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 334

Query: 250 IDM-----------------------------AGDMKEARKIVDEMCTNGLNPDKITYTI 280
                                           A ++  A +  D+M   GL P++ TYT 
Sbjct: 335 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L+DGF ++G L  A  I  EM + G     V + A I G C   ++ EA  +++EM++ G
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L PD  +Y+ +I  FC+ G+    F++ +EM   G  P   TY++L+ GLC+  +L  A 
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 514

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKS 457
            L   MLD+G+ PD+ TY  L+  +C  G+      L  E   KG + D   Y+ L++  
Sbjct: 515 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGL 574

Query: 458 SKYRQKR 464
           +K  + R
Sbjct: 575 NKQARTR 581



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 200/384 (52%), Gaps = 29/384 (7%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           +  +G L   + CF  + ++           LID   +        G    +   G  P+
Sbjct: 224 FCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPN 283

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +NV+++ LC+EG +K+A  + +E G +G     V++NTL+NG+CK  N  +   + +
Sbjct: 284 LISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHA 343

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +G+ P V TY+ALIN +CK   L+ A     +M  RGL PN+  +TTLIDG  + G
Sbjct: 344 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 403

Query: 249 RIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYT 279
            ++ A                               M+EA  +V EM   GL PD ++Y+
Sbjct: 404 LLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 463

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ GFC++G+L+ A  +++EM+++G+  D V +++LI G C   ++ EA  + +EML +
Sbjct: 464 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM 523

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL PD+ TYT +I+ +C  GD      L  EM   G LP   TY+ L+NGL K  + + A
Sbjct: 524 GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREA 583

Query: 400 NMLLDTMLDLGVVPDDITYNILLE 423
             LL  ++    VP D+TY+ L+E
Sbjct: 584 KRLLFKLIYEESVPSDVTYDTLIE 607



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 178/369 (48%), Gaps = 44/369 (11%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E++  G SPSV  +  L++ +CK   +  A   FD+   RGL     ++ TLI+
Sbjct: 338 ALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 397

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +   L+E +R+ + M  SG  P V TY+A I+G C   R+++A  ++ EM E+GL P
Sbjct: 398 GFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 457

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIV 263
           + V ++T+I G C+ G +D A  MK                             EA  + 
Sbjct: 458 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 517

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM   GL PD+ TYT L++ +C EGDL  AL +  EMI +G   D V ++ LI+G  + 
Sbjct: 518 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQ 577

Query: 324 GKVVEAERMLREMLKVGLKPDDATY-TMVIDC--------------FCKNGDTKTGFRLL 368
            +  EA+R+L +++     P D TY T++ +C              FC  G      R+ 
Sbjct: 578 ARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVF 637

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           + M    H P    YN +++G C+ G L  A  L   M+  G VP  +T   L++   K 
Sbjct: 638 ESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKE 697

Query: 429 GNPEDFDKL 437
           G  E+  ++
Sbjct: 698 GMNEEMSEV 706



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 185/373 (49%), Gaps = 21/373 (5%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L+ A++ F  +R    R   R    LID   R  L         E+ + G+SPSV  +N 
Sbjct: 370 LNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 429

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
            +H  C   ++++A  V  E  ++GL    VS++T+I+G C+   LD  F++K  M   G
Sbjct: 430 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 489

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD  TYS+LI GLC+  RL +A  L  EM + GL P++  +TTLI+ +C      + G
Sbjct: 490 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYC------VEG 543

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD-----IRKEMIKRGIELD 309
           D+ +A  + DEM   G  PD +TY++L++G  K+     A       I +E +   +  D
Sbjct: 544 DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYD 603

Query: 310 -------NVAF---TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
                  N+ F    ALI GFC  G + EA+R+   M++   KP +A Y ++I   C+ G
Sbjct: 604 TLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGG 663

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +    F L KEM   G +P   T   L+  L K G  +  + ++   L    + +     
Sbjct: 664 NLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAK 723

Query: 420 ILLEGHCKHGNPE 432
           +L+E + K GN E
Sbjct: 724 VLVEINHKEGNME 736


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 211/394 (53%), Gaps = 29/394 (7%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
           DDA +CF +++          C  ++   +++N        Y E+       SV  FN++
Sbjct: 138 DDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIM 197

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++ LCKEGK+K A+         G+    V++NT+I+G+C    ++    +  +M+  G+
Sbjct: 198 INVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGV 257

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           +PD YTY + I+G+CKE +L++A  +L +M E GL P  V + TLIDG+C  G ++MA D
Sbjct: 258 KPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFD 317

Query: 256 -----------------------------MKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
                                        M EA  I+ EM   GL PD +TY IL++G+C
Sbjct: 318 YRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYC 377

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           + G+++ A  +  EMI +GI+   V +T+LI    + G++ +A+ +  ++++ G+ PD  
Sbjct: 378 RCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLI 437

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            +  +ID  C NG+    F +LKEM     +P   T+N LM G C+ G+++ A  L++ M
Sbjct: 438 MFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEM 497

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
              G+ PD I+YN L+ G+ K G+ +D  +++ E
Sbjct: 498 KSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDE 531



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 29/330 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y +   +  +CKEGK+++A  + ++  + GL  TAV++NTLI+G+C   NL+  
Sbjct: 256 GVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMA 315

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +  M   G+ P V TY+ LI+ L  + ++D+A+ ++ EM E+GL P+ V +  LI+G
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILING 375

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           +C+ G +  A                             G MK+A  + +++   G+ PD
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD 435

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            I +  L+DG C  G+++ A  + KEM +  +  D V F  L+ G CR GKV  A  ++ 
Sbjct: 436 LIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIE 495

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM   G+KPD  +Y  +I  + K GD K  FR+  EM S G  P + TYNAL+ GLCK+ 
Sbjct: 496 EMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNE 555

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +  +A  LL  M+  G+ P+D TY  L+EG
Sbjct: 556 EGDHAEQLLKEMISKGITPNDNTYLSLIEG 585



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 185/354 (52%), Gaps = 6/354 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           +G    A +   +++ RG         + +      G L++A      +++   R  A  
Sbjct: 239 RGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVT 298

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              LID         +   +  +++  G  P+V  +N+L+H L  + K+ +A  +  E  
Sbjct: 299 YNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMS 358

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           ++GL   +V++N LING+C+  N+ + F L   M   G++P   TY++LI  L K  R+ 
Sbjct: 359 EKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMK 418

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ L  ++  +G+ P+ ++F  LIDGHC NG +D A  M      + EM    + PD++
Sbjct: 419 QADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAM------LKEMDQMKVVPDEV 472

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+  L+ G C+EG +E+A ++ +EM  RGI+ D++++  LISG+ + G + +A R+  EM
Sbjct: 473 TFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEM 532

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           L +G  P   TY  +I   CKN +     +LLKEM S G  P   TY +L+ G+
Sbjct: 533 LSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 15/321 (4%)

Query: 151 VFDEFG-KRGLHA--TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           VF+E G  RG+    T V ++ LI   C+ K  D+ F    +M+G G+ P V+  + +++
Sbjct: 105 VFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLS 164

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
              K NR + A +L  EM    +  + V F  +I+  CK G+      +K+A++ +  M 
Sbjct: 165 LFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGK------LKKAKEFIGLME 218

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G+ P+ +TY  ++ G+C  G +E A  I   M  RG++ D+  + + ISG C+ GK+ 
Sbjct: 219 ALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLE 278

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA  ML +M ++GL+P   TY  +ID +C  G+ +  F    +M  +G +P V TYN L+
Sbjct: 279 EASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLI 338

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
           + L    ++  A+ ++  M + G+VPD +TYNIL+ G+C+ GN +    L  E   KG+ 
Sbjct: 339 HALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQ 398

Query: 445 SDYACYTSLV---SKSSKYRQ 462
                YTSL+   SK  + +Q
Sbjct: 399 PTRVTYTSLIYVLSKRGRMKQ 419


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 234/453 (51%), Gaps = 31/453 (6%)

Query: 18  VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT-HLPGLVLDALMIVYVDLGFLD 76
           V  K  S A+ L+  ++ + G+ S   +  S++    T  +  LV D L+  YV    L+
Sbjct: 74  VRSKRLSDAQTLILRMIRRSGV-SRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLN 132

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           +    F++LR+  F +    C  L+  +++     +    Y EI   G   +VY  N+++
Sbjct: 133 EGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMV 192

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
           + LCK+ KI D +    +  ++G+ A  V++NTLIN +C+   L E F + + M G G++
Sbjct: 193 NALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLK 252

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI----DM 252
           P ++TY+A+INGLCK+ R   A+ + +EM   GL+P+   + TL+   C+N       D+
Sbjct: 253 PTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDI 312

Query: 253 AGDM-------------------------KEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
             DM                          +A     +M T+GL PD + YTIL++G+C+
Sbjct: 313 FSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCR 372

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G +  AL+IR +M+++G  LD VA+  +++G C+   + +A  +  EM++ G+ PD  T
Sbjct: 373 NGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCT 432

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           +T +I   CK G+      L   M      P + TYN L++G CK  +++ AN L + M+
Sbjct: 433 FTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMI 492

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
              + P+ I+Y IL+ G+C  G   +  +L  E
Sbjct: 493 SRKIFPNHISYAILVNGYCNLGFVSEAFRLWDE 525



 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 9/342 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++L  G SP +  F+ L+    + G +  A M F +    GL    V +  LING+C+
Sbjct: 313 FSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCR 372

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + E   ++  M   G   DV  Y+ ++NGLCK+  L DA  L  EM ERG+ P+   
Sbjct: 373 NGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCT 432

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           FTTLI GHCK G      +M +A  +   M    + PD +TY IL+DGFCK  ++E A +
Sbjct: 433 FTTLIHGHCKEG------NMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANE 486

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EMI R I  +++++  L++G+C  G V EA R+  EM++ G+KP   T   VI  +C
Sbjct: 487 LWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYC 546

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           ++GD       L +M S+G  P   TYN L+NG  K   +  A  L++ M   G+ PD +
Sbjct: 547 RSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVV 606

Query: 417 TYNILLEGHCKHGNPEDFD---KLQSEKGLVSDYACYTSLVS 455
           TYN++L G C+ G  ++ +   +   E+G+  D + YT+L++
Sbjct: 607 TYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLIN 648



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 193/374 (51%), Gaps = 7/374 (1%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           +  +F+ +L  RG     +   +L+ V    G LD A+  FR ++             LI
Sbjct: 309 AKDIFSDMLH-RGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILI 367

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           +   R  + +  L    ++L+ G +  V  +N +++ LCK+  + DA  +FDE  +RG+ 
Sbjct: 368 NGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVV 427

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
               +F TLI+GHCK  N+ +   L  +M    ++PD+ TY+ LI+G CK   ++ A  L
Sbjct: 428 PDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANEL 487

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
            +EM  R + PN + +  L++G+C  G +       EA ++ DEM   G+ P  +T   +
Sbjct: 488 WNEMISRKIFPNHISYAILVNGYCNLGFV------SEAFRLWDEMIRKGIKPTLVTCNTV 541

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G+C+ GDL  A +   +MI  G+  D++ +  LI+GF +G  + +A  ++ +M   GL
Sbjct: 542 IKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGL 601

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           +PD  TY ++++ FC+ G  +    +L++M   G  P   TY  L+NG      LK A  
Sbjct: 602 QPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFR 661

Query: 402 LLDTMLDLGVVPDD 415
             D ML  G VPDD
Sbjct: 662 FHDEMLQRGFVPDD 675


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 201/344 (58%), Gaps = 9/344 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++Y +N ++  LCK GK+ DA+ V  E   +G+    V + TLI+G CK  N+   
Sbjct: 40  GLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAA 99

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           ++L   ME   + PD   Y+A+I GLC+  ++ +A+ + ++M  RG+ P++V +TTLIDG
Sbjct: 100 YKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDG 159

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK      +G+M++A  + ++M  +GL P+ +TYT L DG CK G +++A ++  EM  
Sbjct: 160 YCK------SGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCG 213

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++L+   + +L++G C+ G + +A +++ EM   G+ PD  T+T ++D +CK G+   
Sbjct: 214 KGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVK 273

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL+EM   G  P V T+N LMNG C  G L++   LL  ML+ G++P+  TYN L++
Sbjct: 274 AHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMK 333

Query: 424 GHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            +C   N     +  K    +G++ D   Y  L+    K R  +
Sbjct: 334 QYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMK 377



 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 189/331 (57%), Gaps = 32/331 (9%)

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           RG     VS++T+ING+C    L +  +L   M+  G++P++YTY+++I  LCK  ++DD
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------ 253
           AE +L EM  +G+ P+ V++TTLIDG CK G I  A                        
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 254 -----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                G M EA K+ ++M + G+ PD++TYT L+DG+CK G++E A  +  +M++ G+  
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + V +TAL  G C+ G+V  A  +L EM   GL+ +  TY  +++  CK+G+ +   +L+
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLM 243

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +EM   G  P   T+  LM+  CK G++  A+ LL  MLD G+ P  IT+N+L+ G C  
Sbjct: 244 EEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMS 303

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
           G  ED ++L +   EKG++ +   Y SL+ +
Sbjct: 304 GMLEDGERLLAWMLEKGIMPNTTTYNSLMKQ 334



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 171/293 (58%), Gaps = 6/293 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +  ++  LC+ GK+ +A  VF++   RG+    V++ TLI+G+CK+  +++ F L
Sbjct: 113 PDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSL 172

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  SG+ P+V TY+AL +GLCK  ++D A  LLHEMC +GL  N   + +L++G CK
Sbjct: 173 HNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCK 232

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G I      ++A K+++EM   G+ PD IT+T L+D +CK G++  A ++ +EM+ RG+
Sbjct: 233 SGNI------RQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGL 286

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +   + F  L++GFC  G + + ER+L  ML+ G+ P+  TY  ++  +C   + +    
Sbjct: 287 QPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTE 346

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           + K M + G +P   TYN L+ G CK   +K A  L   M + G      +YN
Sbjct: 347 IYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYN 399



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/273 (39%), Positives = 158/273 (57%), Gaps = 9/273 (3%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+  G  PDV +YS +ING C    L     L+ EM  +GL PN   + ++I   CK+G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D      +A +++ EM   G+ PD + YT L+DGFCK G++++A  +  EM K+ I  D
Sbjct: 61  VD------DAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            +A+TA+I G CR GK++EA+++  +M   G++PD+ TYT +ID +CK+G+ +  F L  
Sbjct: 115 FIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHN 174

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P V TY AL +GLCK GQ+  AN LL  M   G+  +  TYN L+ G CK G
Sbjct: 175 QMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSG 234

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           N     KL  E    G+  D   +T+L+    K
Sbjct: 235 NIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCK 267



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 150/309 (48%), Gaps = 6/309 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   ++         + +++  G +P+V  +  L   LCK G++  A  +  E   +G
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKG 215

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     ++N+L+NG CK+ N+ +  +L   ME +GM PD  T++ L++  CK   +  A 
Sbjct: 216 LQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAH 275

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM +RGL P  + F  L++G C      M+G +++  +++  M   G+ P+  TY 
Sbjct: 276 ELLREMLDRGLQPTVITFNVLMNGFC------MSGMLEDGERLLAWMLEKGIMPNTTTYN 329

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+  +C   ++    +I K M  RG+  D+  +  LI G C+   + EA  + +EM + 
Sbjct: 330 SLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEK 389

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G     ++Y  +I  F K         L +EMR +G     E YN  ++     G ++ A
Sbjct: 390 GFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETA 449

Query: 400 NMLLDTMLD 408
             L D  ++
Sbjct: 450 LELCDEAIE 458


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 200/344 (58%), Gaps = 9/344 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++Y ++ ++  LCK GK+ + + V  E  KRG+    V + TLI+G CK  N    
Sbjct: 175 GLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAA 234

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           ++L S ME   + PD   +SALI GL    ++ +A+ L +EM ++G  P++V +T LIDG
Sbjct: 235 YKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDG 294

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK       G+MK+A  + ++M   GL P+ +TYT L DG CK G+L++A ++  EM +
Sbjct: 295 YCK------LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCR 348

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++L+   +  +++G C+ G +++A +++ EM + GL PD  TYT ++D + K G+   
Sbjct: 349 KGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVK 408

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL+EM   G  P V T+N LMNGLC  G+L++   LL  ML+ G++P+  TYN +++
Sbjct: 409 ARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMK 468

Query: 424 GHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            +C   N     +  +    +G+V D   Y  L+    K R  +
Sbjct: 469 QYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMK 512



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 226/429 (52%), Gaps = 33/429 (7%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM-RTNLPTVTLGFYLE 119
           V D    V V+ G L++A + F  L  +   + A  C   +  +  + ++  + L  + E
Sbjct: 41  VFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSE 100

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
               G   +   +N+LM+ L + GKI++A  +      +G     VS+ T+I+G+C    
Sbjct: 101 FPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGE 160

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L +  +L   M+  G++P++YTYS++I  LCK  ++ + E +L EM +RG+ P+ VI+TT
Sbjct: 161 LQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTT 220

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LIDG CK G    A                             G + EA K+ +EM   G
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG 280

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             PD++TYT L+DG+CK G+++ A  +  +M++ G+  + V +TAL  G C+ G++  A 
Sbjct: 281 FEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTAN 340

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L EM + GL+ + +TY  +++  CK G+     +L++EM+  G  P   TY  LM+  
Sbjct: 341 ELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAY 400

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDY 447
            K G++  A  LL  MLD G+ P  +T+N+L+ G C  G  ED ++L     EKG++ + 
Sbjct: 401 YKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNA 460

Query: 448 ACYTSLVSK 456
           A Y S++ +
Sbjct: 461 ATYNSIMKQ 469



 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 183/331 (55%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    F+ L+  L   GK+ +A  +F+E  K+G     V++  LI+G+CK   + + F L
Sbjct: 248 PDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFL 307

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G+ P+V TY+AL +GLCK   LD A  LLHEMC +GL  N   + T+++G CK
Sbjct: 308 HNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCK 367

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 AG++ +A K+++EM   GL+PD ITYT L+D + K G++  A ++ +EM+ RG+
Sbjct: 368 ------AGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGL 421

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +   V F  L++G C  GK+ + ER+L+ ML+ G+ P+ ATY  ++  +C   + +    
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTE 481

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + M + G +P   TYN L+ G CK   +K A  L   M++        +YN L++G  
Sbjct: 482 IYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFF 541

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K     +  +L  E   +GLV+    Y   V
Sbjct: 542 KRKKLLEARQLFEEMRREGLVASAEIYNLFV 572



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 187/377 (49%), Gaps = 47/377 (12%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD---------------------------- 153
           D+G  P  +VF+V    L + G + +A+  FD                            
Sbjct: 34  DWGSDP--HVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDML 91

Query: 154 --------EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
                   EF + G+     S+N L+N   +   + E   L   ME  G  PDV +Y+ +
Sbjct: 92  GMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTI 151

Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
           I+G C    L     L+ EM  +GL PN   ++++I   CK+G++       E  K++ E
Sbjct: 152 IDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKV------VEGEKVLRE 205

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   G+ PD + YT L+DGFCK G+ ++A  +  EM  R I  D++AF+ALI G    GK
Sbjct: 206 MMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGK 265

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           VVEA+++  EM+K G +PD+ TYT +ID +CK G+ K  F L  +M   G  P V TY A
Sbjct: 266 VVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTA 325

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKG 442
           L +GLCK G+L  AN LL  M   G+  +  TYN ++ G CK GN     KL     E G
Sbjct: 326 LADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG 385

Query: 443 LVSDYACYTSLVSKSSK 459
           L  D   YT+L+    K
Sbjct: 386 LHPDTITYTTLMDAYYK 402



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 178/375 (47%), Gaps = 10/375 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G   +A    S +E R      +   AL+      G + +A + F  + K  F     
Sbjct: 227 KLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEV 286

Query: 96  GCRCLIDRMMRTNLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
               LID   +  L  +   F+L  +++  G +P+V  +  L   LCK G++  A  +  
Sbjct: 287 TYTALIDGYCK--LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLH 344

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E  ++GL     ++NT++NG CKA N+ +  +L   M+ +G+ PD  TY+ L++   K  
Sbjct: 345 EMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTG 404

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            +  A  LL EM +RGL P  V F  L++G C      M+G +++  +++  M   G+ P
Sbjct: 405 EMVKARELLREMLDRGLQPTVVTFNVLMNGLC------MSGKLEDGERLLKWMLEKGIMP 458

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           +  TY  ++  +C   ++  + +I + M  +G+  D+  +  LI G C+   + EA  + 
Sbjct: 459 NAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLH 518

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           +EM++       ++Y  +I  F K        +L +EMR +G + + E YN  ++   + 
Sbjct: 519 KEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEE 578

Query: 394 GQLKNANMLLDTMLD 408
           G ++    L D  ++
Sbjct: 579 GNMETTLELCDEAIE 593



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+LD G  P+V  FNVLM+ LC  GK++D + +     ++G+   A ++N+++  +C   
Sbjct: 415 EMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRN 474

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+     +   M   G+ PD  TY+ LI G CK   + +A  L  EM E+        + 
Sbjct: 475 NMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYN 534

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G  K  +      + EAR++ +EM   GL      Y + +D   +EG++E+ L++ 
Sbjct: 535 ALIKGFFKRKK------LLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELC 588

Query: 299 KEMIKR 304
            E I++
Sbjct: 589 DEAIEK 594



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
           +R N+  ++   Y  +   G  P    +N+L+   CK   +K+A  +  E  ++  + TA
Sbjct: 472 IRNNM-RISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTA 530

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            S+N LI G  K K L E  +L   M   G+      Y+  ++   +E  ++    L  E
Sbjct: 531 SSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE 590

Query: 225 MCERGL 230
             E+ L
Sbjct: 591 AIEKCL 596


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 197/344 (57%), Gaps = 9/344 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y +N ++  LCK GK+ +A+ V  E    G+    V + TLI+G CK  N+   
Sbjct: 318 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 377

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           +RL   M+   + PD  TY+A+I GLC+  R+ +A+ L HEM  + L P++V +T LIDG
Sbjct: 378 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 437

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G+      MKEA  + ++M   GL P+ +TYT L DG CK G++++A ++  EM +
Sbjct: 438 YCKEGK------MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 491

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+EL+   + +L++G C+ G + +A +++++M   G  PD  TYT ++D +CK+ +   
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL++M      P V T+N LMNG C  G L++   LL  ML+ G++P+  TYN L++
Sbjct: 552 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 611

Query: 424 GHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            +C   N     +  +    KG+V D   Y  L+    K R  +
Sbjct: 612 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMK 655



 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 220/429 (51%), Gaps = 33/429 (7%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR-TNLPTVTLGFYLE 119
           V D    V V+ G LD+A + F  +  +   I    C   I  +    +   + L  ++E
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVE 243

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
             + G   +   +N++ H LC+ G++ +A  +  +   RG     +S++T+ING+C+   
Sbjct: 244 FPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGE 303

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L    +L   M+  G++P+ YTY+ +I  LCK  ++ +AE +L EM   G+ P+ VI+TT
Sbjct: 304 LQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTT 363

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LIDG CK G +  A                             G + EA K+  EM    
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L PD++TYT L+DG+CKEG ++ A  +  +M++ G+  + V +TAL  G C+ G+V  A 
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L EM + GL+ +  TY  +++  CK G+     +L+K+M   G  P   TY  LM+  
Sbjct: 484 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 543

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDY 447
           CK  ++  A+ LL  MLD  + P  +T+N+L+ G C  G  ED +KL     EKG++ + 
Sbjct: 544 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 603

Query: 448 ACYTSLVSK 456
             Y SL+ +
Sbjct: 604 TTYNSLIKQ 612



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/348 (37%), Positives = 190/348 (54%), Gaps = 10/348 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKE-GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           ++L+YG   SV   N+ +  L ++   IK A  VF EF + G+     S+N + +  C+ 
Sbjct: 207 KMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQL 266

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             + E  +L   ME  G  PDV +YS +ING C+   L     L+ EM  +GL PN   +
Sbjct: 267 GRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTY 326

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             +I   CK G++       EA +++ EM + G+ PD + YT L+DGFCK G++ SA  +
Sbjct: 327 NGVILLLCKTGKV------AEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRL 380

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             EM KR I  D + +TA+I G C+ G+V+EA+++  EM+   L+PD+ TYT +ID +CK
Sbjct: 381 FDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCK 440

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  K  F L  +M   G  P + TY AL +GLCK G++  AN LL  M   G+  +  T
Sbjct: 441 EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYT 500

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           YN L+ G CK GN +   KL  +    G   D   YT+L+    K R+
Sbjct: 501 YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 160/336 (47%), Gaps = 29/336 (8%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP    +  ++  LC+ G++ +A  +F E   + L    V++  LI+G+CK   + E F 
Sbjct: 390 SPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFS 449

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M   G+ P++ TY+AL +GLCK   +D A  LLHEMC +GL  N   + +L++G C
Sbjct: 450 LHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLC 509

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           K G ID A                              +M  A +++ +M    L P  +
Sbjct: 510 KAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVV 569

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+ +L++GFC  G LE    + K M+++GI  +   + +LI  +C    +     + R M
Sbjct: 570 TFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM 629

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G+ PD  TY ++I   CK  + K  + L ++M   G    V +YNAL+ G  K  + 
Sbjct: 630 CAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKF 689

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             A  L + M   G+V D   YNI  + +   G  E
Sbjct: 690 LEARELFEQMRREGLVADREIYNIFADINYDEGKME 725



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 6/301 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G +P++  +  L   LCK G++  A  +  E  ++GL     ++N+L+NG CKA 
Sbjct: 453 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 512

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D+  +L   ME +G  PD  TY+ L++  CK   +  A  LL +M +R L P  V F 
Sbjct: 513 NIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFN 572

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C      M+G +++  K++  M   G+ P+  TY  L+  +C   ++ +  +I 
Sbjct: 573 VLMNGFC------MSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIY 626

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M  +G+  D   +  LI G C+   + EA  + R+M+  G     ++Y  +I  F K 
Sbjct: 627 RGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKR 686

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L ++MR +G +   E YN   +     G+++    L D  ++  +V D  T 
Sbjct: 687 KKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTK 746

Query: 419 N 419
           N
Sbjct: 747 N 747



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 4/171 (2%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  + LM  +   G L+D  +  + + +      A     LI +    N    T   Y  
Sbjct: 569 VTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRG 628

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G  P    +N+L+   CK   +K+A  +  +   +G + T  S+N LI G  K K 
Sbjct: 629 MCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKK 688

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
             E   L   M   G+  D   Y+   +    E +++    L  E+C+  +
Sbjct: 689 FLEARELFEQMRREGLVADREIYNIFADINYDEGKME----LTLELCDEAI 735


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 197/344 (57%), Gaps = 9/344 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y +N ++  LCK GK+ +A+ V  E    G+    V + TLI+G CK  N+   
Sbjct: 218 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 277

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           +RL   M+   + PD  TY+A+I GLC+  R+ +A+ L HEM  + L P++V +T LIDG
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 337

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G+      MKEA  + ++M   GL P+ +TYT L DG CK G++++A ++  EM +
Sbjct: 338 YCKEGK------MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 391

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+EL+   + +L++G C+ G + +A +++++M   G  PD  TYT ++D +CK+ +   
Sbjct: 392 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 451

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL++M      P V T+N LMNG C  G L++   LL  ML+ G++P+  TYN L++
Sbjct: 452 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 511

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQKR 464
            +C   N     ++      KG+V D   Y  L+    K R  +
Sbjct: 512 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMK 555



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 179/348 (51%), Gaps = 39/348 (11%)

Query: 148 AQMVFDEFGKRGLHATAVSFNTLI-------NGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           A+ +FD+    GL  +  S N  I       +G   A   +   +L   M+  G++P+ Y
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------- 253
           TY+ +I  LCK  ++ +AE +L EM   G+ P+ VI+TTLIDG CK G +  A       
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 254 ----------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
                                 G + EA K+  EM    L PD++TYT L+DG+CKEG +
Sbjct: 285 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 344

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A  +  +M++ G+  + V +TAL  G C+ G+V  A  +L EM + GL+ +  TY  +
Sbjct: 345 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  CK G+     +L+K+M   G  P   TY  LM+  CK  ++  A+ LL  MLD  +
Sbjct: 405 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 464

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
            P  +T+N+L+ G C  G  ED +KL     EKG++ +   Y SL+ +
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQ 512



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 96/245 (39%), Positives = 139/245 (56%), Gaps = 9/245 (3%)

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L+ EM  +GL PN   +  +I   CK G++       EA +++ EM + G+ PD + YT 
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKV------AEAERVLREMISEGIAPDGVIYTT 263

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L+DGFCK G++ SA  +  EM KR I  D + +TA+I G C+ G+V+EA+++  EM+   
Sbjct: 264 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 323

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L+PD+ TYT +ID +CK G  K  F L  +M   G  P + TY AL +GLCK G++  AN
Sbjct: 324 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 383

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKS 457
            LL  M   G+  +  TYN L+ G CK GN +   KL  +    G   D   YT+L+   
Sbjct: 384 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 443

Query: 458 SKYRQ 462
            K R+
Sbjct: 444 CKSRE 448



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 160/336 (47%), Gaps = 29/336 (8%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP    +  ++  LC+ G++ +A  +F E   + L    V++  LI+G+CK   + E F 
Sbjct: 290 SPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFS 349

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M   G+ P++ TY+AL +GLCK   +D A  LLHEMC +GL  N   + +L++G C
Sbjct: 350 LHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLC 409

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           K G ID A                              +M  A +++ +M    L P  +
Sbjct: 410 KAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVV 469

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+ +L++GFC  G LE    + K M+++GI  +   + +LI  +C    +     + R M
Sbjct: 470 TFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM 529

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G+ PD  TY ++I   CK  + K  + L ++M   G    V +YNAL+ G  K  + 
Sbjct: 530 CAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKF 589

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             A  L + M   G+V D   YNI  + +   G  E
Sbjct: 590 LEARELFEQMRREGLVADREIYNIFADINYDEGKME 625



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 6/301 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G +P++  +  L   LCK G++  A  +  E  ++GL     ++N+L+NG CKA 
Sbjct: 353 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 412

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D+  +L   ME +G  PD  TY+ L++  CK   +  A  LL +M +R L P  V F 
Sbjct: 413 NIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFN 472

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C      M+G +++  K++  M   G+ P+  TY  L+  +C   ++ +  +I 
Sbjct: 473 VLMNGFC------MSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIY 526

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M  +G+  D   +  LI G C+   + EA  + R+M+  G     ++Y  +I  F K 
Sbjct: 527 RGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKR 586

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L ++MR +G +   E YN   +     G+++    L D  ++  +V D  T 
Sbjct: 587 KKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTK 646

Query: 419 N 419
           N
Sbjct: 647 N 647



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 4/171 (2%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  + LM  +   G L+D  +  + + +      A     LI +    N    T   Y  
Sbjct: 469 VTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRG 528

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G  P    +N+L+   CK   +K+A  +  +   +G + T  S+N LI G  K K 
Sbjct: 529 MCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKK 588

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
             E   L   M   G+  D   Y+   +    E +++    L  E+C+  +
Sbjct: 589 FLEARELFEQMRREGLVADREIYNIFADINYDEGKME----LTLELCDEAI 635


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/505 (30%), Positives = 239/505 (47%), Gaps = 53/505 (10%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET----RGTHL 57
           +F  T H     +H LV  K++  A  L   + +     + ASLF  + +T         
Sbjct: 71  NFFFTPHCKCLALHILVRFKLYRTAHSLAADLAATLPDPTGASLFRHLHDTFHLCSSPFS 130

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL-------- 109
              V D ++     LGF+  A+    L  +H F         ++D ++R +         
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 110 --------------PTVT------------------LGFYLEILDYGYSPSVYVFNVLMH 137
                         P V                   LGF  ++   G SP+V  +N L+ 
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197
             CK+ K+K+A  +       G+ A  +S+N++ING C    + E   L   M G G+ P
Sbjct: 251 ASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVP 310

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           D  TY+ L+NG CKE  L    +LL EM  +GL+PN V +TTLI+  CK      AG++ 
Sbjct: 311 DEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK------AGNLS 364

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
            A +I D+M   GL P++ TYT L+DGFC++G +  A  +  EMI  G     V + AL+
Sbjct: 365 RAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G+C  G+V EA  +LR M++ GL PD  +Y+ VI  FC+  +    F++ +EM   G L
Sbjct: 425 HGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVL 484

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P   TY++L+ GLC   +L  A  L   M+  G+ PD++TY  L+  +C  G      +L
Sbjct: 485 PDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRL 544

Query: 438 QSE---KGLVSDYACYTSLVSKSSK 459
             E   +G + D   Y+ L++  +K
Sbjct: 545 HDEMVQRGFLPDNVTYSVLINGLNK 569



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 192/398 (48%), Gaps = 24/398 (6%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L  A++ F  +R    R   R    LID   +  L         E++  G+SPSV  +
Sbjct: 361 GNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTY 420

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L+H  C  G++++A  +     +RGL    VS++T+I G C+ + L + F++K  M  
Sbjct: 421 NALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVE 480

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PD  TYS+LI GLC + +L +A  L  EM  RGL P++V +T+LI+ +C +     
Sbjct: 481 KGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVD----- 535

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            G++ +A ++ DEM   G  PD +TY++L++G  K+   + A  +  ++       D+V 
Sbjct: 536 -GELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVT 594

Query: 313 FTALIS---------------GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           +  LI                GFC  G + EA+R+ + ML+   KP+ A Y ++I    +
Sbjct: 595 YNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSR 654

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+    + L  E+             AL+  L + G     + LL  +L    + D   
Sbjct: 655 GGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKV 714

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
             +L+E + K GN +    + +E    GL+ D   ++S
Sbjct: 715 AKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPDGGIHSS 752


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 229/451 (50%), Gaps = 11/451 (2%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           +L +  TM+H L  HK    A++LL  I  +  + S + L A +           +L  L
Sbjct: 74  SLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWL 133

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +I Y +     DAIQ F  +R H F+     C  L++ + +  L  +    Y +++  G 
Sbjct: 134 VIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGV 193

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P++++FNVL+H  CK G ++ A+ + +E   R +     ++NTLI+ +CK     E   
Sbjct: 194 VPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALG 253

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           ++  ME  G+ PD+ TY++LI G C+E R+ +A  L  E+   G TPN V +TTLIDG+C
Sbjct: 254 IQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYC 311

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +        D++EA ++ + M   GL+P  +TY  +L   C+EG ++ A  +  EM +R 
Sbjct: 312 R------VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERK 365

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E DNV    LI+ +C+ G +  A ++ ++ML+ GLKPD  T+  +I  FCK  +  +  
Sbjct: 366 VEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAK 425

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
             L EM   G  P+  TY+ L++        +    L D +   G+  D   Y  L+   
Sbjct: 426 EFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRL 485

Query: 426 CKHGNPEDFDK---LQSEKGLVSDYACYTSL 453
           CK    E  ++   L   KG+  D   YTSL
Sbjct: 486 CKIDKIESAERIFTLMQGKGMKGDSVVYTSL 516



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 43/283 (15%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP +  +N L++  C+EG++++A  +F E    G     V++ TLI+G+C+  +L+E 
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEA 319

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL+ VME  G+ P V TY++++  LC+E ++ DA  LL+EM ER + P++V   TLI+ 
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINA 379

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI- 302
           +CK       GDM  A K+  +M   GL PD+ T+  L+ GFCK  +++SA +   EM+ 
Sbjct: 380 YCK------IGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLD 433

Query: 303 ----------------------------------KRGIELDNVAFTALISGFCRGGKVVE 328
                                             ++G+ +D   + ALI   C+  K+  
Sbjct: 434 AGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIES 493

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           AER+   M   G+K D   YT +   + K G       +L EM
Sbjct: 494 AERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 120/216 (55%), Gaps = 8/216 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N ++ KLC+EGKIKDA  + +E  +R +    V+ NTLIN +CK  ++   
Sbjct: 330 GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSA 389

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++K  M  +G++PD +T+ ALI+G CK + +D A+  L EM + G +P+   ++ L+D 
Sbjct: 390 MKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS 449

Query: 244 HCKNGRIDMAGDMKEAR-KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           +          D KEA  ++ DE+   GL  D   Y  L+   CK   +ESA  I   M 
Sbjct: 450 YYDQ-------DNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ 502

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            +G++ D+V +T+L   + + GK + A  ML EM K
Sbjct: 503 GKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDK 538



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 8/219 (3%)

Query: 49  ILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           ++E  G H PG+V  ++++    + G + DA +    + +         C  LI+   + 
Sbjct: 325 VMEVEGLH-PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 383

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                 +    ++L+ G  P  + F  L+H  CK  ++  A+    E    G   +  ++
Sbjct: 384 GDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTY 443

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + L++ +    N +   RL   +   G+  D+  Y ALI  LCK ++++ AE +   M  
Sbjct: 444 SWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQG 503

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G+  + V++T+L   + K G+   A DM      +DEM
Sbjct: 504 KGMKGDSVVYTSLAYAYFKAGKAIAASDM------LDEM 536



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+LD G+SPS   ++ L+     +   +    + DE  ++GL      +  LI   C
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   ++   R+ ++M+G GM+ D   Y++L     K  +   A  +L EM +R L     
Sbjct: 487 KIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLK 546

Query: 236 IFTTLIDGHCKNGRI 250
           I+      +  +G I
Sbjct: 547 IYRCFSASYAGDGSI 561


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 229/451 (50%), Gaps = 11/451 (2%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           +L +  TM+H L  HK    A++LL  I  +  + S + L A +           +L  L
Sbjct: 74  SLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWL 133

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +I Y +     DAIQ F  +R H F+     C  L++ + +  L  +    Y +++  G 
Sbjct: 134 VIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGV 193

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P++++FNVL+H  CK G ++ A+ + +E   R +     ++NTLI+ +CK     E   
Sbjct: 194 VPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALG 253

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           ++  ME  G+ PD+ TY++LI G C+E R+ +A  L  E+   G TPN V +TTLIDG+C
Sbjct: 254 IQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYC 311

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +        D++EA ++ + M   GL+P  +TY  +L   C+EG ++ A  +  EM +R 
Sbjct: 312 R------VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERK 365

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E DNV    LI+ +C+ G +  A ++ ++ML+ GLKPD  T+  +I  FCK  +  +  
Sbjct: 366 VEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAK 425

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
             L EM   G  P+  TY+ L++        +    L D +   G+  D   Y  L+   
Sbjct: 426 EFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRL 485

Query: 426 CKHGNPEDFDK---LQSEKGLVSDYACYTSL 453
           CK    E  ++   L   KG+  D   YTSL
Sbjct: 486 CKIDKIESAERIFTLMQGKGMKGDSVVYTSL 516



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 43/283 (15%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP +  +N L++  C+EG++++A  +F E    G     V++ TLI+G+C+  +L+E 
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEA 319

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL+ VME  G+ P V TY++++  LC+E ++ DA  LL+EM ER + P++V   TLI+ 
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINA 379

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI- 302
           +CK       GDM  A K+  +M   GL PD+ T+  L+ GFCK  +++SA +   EM+ 
Sbjct: 380 YCK------IGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLD 433

Query: 303 ----------------------------------KRGIELDNVAFTALISGFCRGGKVVE 328
                                             ++G+ +D   + ALI   C+  K+  
Sbjct: 434 AGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIES 493

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           AER+   M   G+K D   YT +   + K G       +L EM
Sbjct: 494 AERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 120/216 (55%), Gaps = 8/216 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N ++ KLC+EGKIKDA  + +E  +R +    V+ NTLIN +CK  ++   
Sbjct: 330 GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSA 389

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++K  M  +G++PD +T+ ALI+G CK + +D A+  L EM + G +P+   ++ L+D 
Sbjct: 390 MKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS 449

Query: 244 HCKNGRIDMAGDMKEAR-KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           +          D KEA  ++ DE+   GL  D   Y  L+   CK   +ESA  I   M 
Sbjct: 450 YYDQ-------DNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ 502

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            +G++ D+V +T+L   + + GK + A  ML EM K
Sbjct: 503 GKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDK 538



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 8/219 (3%)

Query: 49  ILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           ++E  G H PG+V  ++++    + G + DA +    + +         C  LI+   + 
Sbjct: 325 VMEVEGLH-PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 383

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                 +    ++L+ G  P  + F  L+H  CK  ++  A+    E    G   +  ++
Sbjct: 384 GDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTY 443

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + L++ +    N +   RL   +   G+  D+  Y ALI  LCK ++++ AE +   M  
Sbjct: 444 SWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQG 503

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G+  + V++T+L   + K G+   A DM      +DEM
Sbjct: 504 KGMKGDSVVYTSLAYAYFKAGKAIAASDM------LDEM 536



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+LD G+SPS   ++ L+     +   +    + DE  ++GL      +  LI   C
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   ++   R+ ++M+G GM+ D   Y++L     K  +   A  +L EM +R L     
Sbjct: 487 KIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLK 546

Query: 236 IFTTLIDGHCKNGRI 250
           I+      +  +G I
Sbjct: 547 IYRCFSASYAGDGSI 561


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 198/352 (56%), Gaps = 15/352 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G +P    FN +M  LCK GK + A  +     +R    +  ++NTLI+G CK +
Sbjct: 35  EMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQ 94

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D    L      SG  PDV TYS L +GLCK  R+D+A  L+ EM   G TPN V + 
Sbjct: 95  NVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYN 154

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLIDG CK      A   ++A ++++ + ++G  PD +TYTI++DG CKEG L+ AL + 
Sbjct: 155 TLIDGLCK------ASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV 208

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M+KRG     + +TAL+ G CR G+V EA  + +EM+      D   Y  +++ +CK+
Sbjct: 209 EGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKS 268

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
             TK   +++  +R     P ++ YNALM+G CK G+L     + + M   G VP+  TY
Sbjct: 269 SRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTY 325

Query: 419 NILLEGHCKHGN-PEDFDKLQS--EKGLVSDYACYTSLVS---KSSKYRQKR 464
           NI+++G CKHG   E F  L+S    G V D   Y  ++    K+SK ++ R
Sbjct: 326 NIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 377



 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 185/347 (53%), Gaps = 18/347 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G+ P V  +++L   LCK G+I +A  +  E    G     V++NTLI+G CKA 
Sbjct: 105 EFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKAS 164

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++ + L   +  SG  PDV TY+ +++GLCKE RLD A  ++  M +RG TP+ + +T
Sbjct: 165 KTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYT 224

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C+ GR+D      EA  I  EM +     D + Y  L++G+CK    + A  + 
Sbjct: 225 ALMEGLCRTGRVD------EAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 278

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             +  RG    +V + AL+ G+C+ G++ E   +  +M   G  P+  TY +V+D  CK+
Sbjct: 279 DGI--RGTPYIDV-YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKH 335

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G     F  L+ M S G +P V +YN +++GL K  + K A  +LD M+  G+ PD +TY
Sbjct: 336 GKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTY 395

Query: 419 NILLEGHCKHGNPEDFD------KLQSEKGLVSDYACYTSLVSKSSK 459
           N L+   CK    E FD      K   + G+  D   Y +L+S  S+
Sbjct: 396 NTLMAQFCKE---ERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 439



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 186/344 (54%), Gaps = 10/344 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G +PSV  +  LM  LC+ G++ +A  +F E   +   A A+++ +L+NG+CK+  
Sbjct: 211 MLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSR 270

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E    + V++G    P +  Y+AL++G CKE RLD+   +  +M  RG  PN   +  
Sbjct: 271 TKEA---QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI 327

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++DG CK+G++D      EA   ++ M + G  PD ++Y I++DG  K    + A  +  
Sbjct: 328 VMDGLCKHGKVD------EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLD 381

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +MI+ GI  D V +  L++ FC+  +  +A  +L+ M+K G+ PD+ TY  +I    +  
Sbjct: 382 QMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTN 441

Query: 360 DTKTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                + L+ EM  +G +  A  TYN +++ LCK G LK A +L+D M   GV  + +TY
Sbjct: 442 RLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY 501

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           NI ++  CK G  ++   L SE   + D   YT+++    K  Q
Sbjct: 502 NIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQ 545



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 149/283 (52%), Gaps = 6/283 (2%)

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             +R +     ++N LI+G CKA   D+   +   M   G+ PD  T++++++GLCK  +
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
            + A  LL  M ER   P+   + TLI G CK   +D       A+ +VDE  ++G  PD
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVD------RAKTLVDEFVSSGFVPD 114

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY+IL DG CK G ++ A ++ KEM   G   + V +  LI G C+  K  +A  +L 
Sbjct: 115 VVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            ++  G  PD  TYT+++D  CK G      ++++ M   G  P+V TY ALM GLC+ G
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 234

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           ++  A+ +   M+      D + Y  L+ G+CK    ++  K+
Sbjct: 235 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKV 277



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 193/402 (48%), Gaps = 29/402 (7%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVT 113
           V +ALM  Y   G LD+    F         +  RGC         ++D + +       
Sbjct: 289 VYNALMDGYCKEGRLDEIPNVFE-------DMACRGCVPNIKTYNIVMDGLCKHGKVDEA 341

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
             F   +   G  P V  +N+++  L K  K K+A+ V D+  + G+   AV++NTL+  
Sbjct: 342 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 401

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK +  D+   +   M  +G+ PD  TY+ LI+GL + NRL DA  L+HEM   G   +
Sbjct: 402 FCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVS 461

Query: 234 D-VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
               + T+ID  CK G       +K+A  ++D M  +G+  + +TY I +D  CKEG L+
Sbjct: 462 ACTTYNTIIDRLCKEGC------LKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLD 515

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-GLKPDDATYTMV 351
            A  +  EM       D V++T +I G C+  ++  A ++ REM+ V GL     T+ ++
Sbjct: 516 EASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 572

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID F K         LL+ M   G  P+V TYN ++  LCK  ++  A  L D M   G+
Sbjct: 573 IDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI 632

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           V   ++Y +L+ G C  G  ++     +++ S    + D  C
Sbjct: 633 VASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKC 674



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 9/233 (3%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M ER + P+   +  LIDG CK  + D A +M      + EM   G+ PD +T+  ++DG
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEM------LHEMVDRGVTPDTVTFNSIMDG 54

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK G  E A  +   M +R        +  LISG C+   V  A+ ++ E +  G  PD
Sbjct: 55  LCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPD 114

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY+++ D  CK G     F L+KEM  +G  P + TYN L++GLCK  + + A  LL+
Sbjct: 115 VVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           T++  G VPD +TY I+++G CK G  +   K+     ++G       YT+L+
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 227



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 10/238 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +IDR+ +       L     +  +G   +   +N+ + +LCKEG++ +A  +  E     
Sbjct: 469 IIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL- 527

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                VS+ T+I G CKA+ LD   +L + ++   G+    +T++ LI+   K  RLD+A
Sbjct: 528 --RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEA 585

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL  M +RG +P+ + +  +I   CK  ++D      +A ++ DEM   G+    ++Y
Sbjct: 586 LTLLELMVQRGCSPSVITYNMVITCLCKLDKVD------KAWELFDEMAVRGIVASSVSY 639

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+L+ G C +G  + AL + +EM     E+D++    L       G+  EA  +LR M
Sbjct: 640 TVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/482 (30%), Positives = 248/482 (51%), Gaps = 48/482 (9%)

Query: 22  MHSQARDLLHLIVSKKGMG---SSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           ++S A+ LL  ++S K      +S+SL   + E+  +     + + ++  YV    LD +
Sbjct: 54  LYSHAQSLLLQVISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSS 113

Query: 79  IQCFRLLRKHYFRIPARGC-----------------RCLIDRM-MRTNLPTVTLGFYL-- 118
           I  F  +    F +P   C                  C  +   ++  L   + G  +  
Sbjct: 114 IYYFNEMVDKGF-VPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKG 172

Query: 119 ---------------EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
                          E+ ++G+SP+V ++  L+   CK+G+I+ A+ +F E GK GL A 
Sbjct: 173 CCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVAN 232

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             ++  LI+G  K     +GF +   M+  G+ P++YTY+ ++N LCK+ R  DA  +  
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFD 292

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM ERG++ N V + TLI G C+  + +      EA K++D+M +  +NP+ ITY  L+D
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKAN------EANKVMDQMKSYVINPNLITYNTLID 346

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFC  G L  AL + +++  RG+    V +  L+SGFCR G    A +M++EM + G+KP
Sbjct: 347 GFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKP 406

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              TYT++ID F ++ + +T  +L   M   G +P V TY+ L++G C  GQ+  A+ L 
Sbjct: 407 SKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLF 466

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKY 460
            +M++  + P+++ YN ++ G+CK G+     +L     EK L  + A Y+ L+    K 
Sbjct: 467 KSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKE 526

Query: 461 RQ 462
           R+
Sbjct: 527 RK 528



 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 183/322 (56%), Gaps = 6/322 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +  +       Y ++ ++G  P++Y +N +M++LCK+G+ KDA  VFDE  +RG
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERG 298

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++NTLI G C+    +E  ++   M+   + P++ TY+ LI+G C   +L  A 
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKAL 358

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  ++  RGL+P+ V +  L+ G C+ G      D   A K+V EM   G+ P K+TYT
Sbjct: 359 SLCRDLKSRGLSPSLVTYNVLVSGFCRKG------DTSGAAKMVKEMEERGIKPSKVTYT 412

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+D F +  ++E+A+ +R  M + G+  D   ++ LI GFC  G++ EA R+ + M++ 
Sbjct: 413 ILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L+P++  Y  +I  +CK G +    RL ++M      P V +Y+ L+  LCK  +LK A
Sbjct: 473 MLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEA 532

Query: 400 NMLLDTMLDLGVVPDDITYNIL 421
             L++ M+D G+ P D   N++
Sbjct: 533 EDLVEKMIDSGIDPSDTICNLI 554


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 239/470 (50%), Gaps = 48/470 (10%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLF--ASILETRGTHLPGLVLD 63
            +  +  ++H L   K +++ R LL    +K    S++++F   S+L + G     +++D
Sbjct: 106 NVEQFCRLLHLLANAKNYNKIRALLDSF-AKNAHYSNSTIFHSLSVLGSWGCA-NSIIVD 163

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-- 121
            L+  YV  G +D A++ F     + FR+ A  C  ++  +++     V    Y E++  
Sbjct: 164 MLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRR 223

Query: 122 ---------------------------------DYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                                             +G+SPSV  +N ++   CK GK+  A
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +  E   + +H   ++FN LI+G C+ +N+    ++   M+  G++P+V TY++LING
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   +LD+A  L  +M   GL PN V +  LI+G CK         +KEAR+++D++  
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM------LKEAREMLDDIGK 397

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL P+ IT+  L+D + K G ++ A  +R  M+  G+  +   +  LI GFCR G V E
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKE 457

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM---RSDGHLPAVETYNA 385
           A ++ +EM   GLK D  TY +++D  CK G+T+   RLL EM      G    + TYN 
Sbjct: 458 ARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNV 517

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
           L+ G C  G+L+ AN LL+ ML+ G++P+  TY+IL +   + G   D D
Sbjct: 518 LIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDID 567



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 214/417 (51%), Gaps = 22/417 (5%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLR-----KHYFRIPARGCRCLIDRMMR-TNLPT 111
           P L+L        + G + +  Q  RLL      K+Y +I     R L+D   +  +   
Sbjct: 87  PDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKI-----RALLDSFAKNAHYSN 141

Query: 112 VTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            T+   L +L  +G + S+ V ++L+    K G++  A   FD  G  G   +A+S N +
Sbjct: 142 STIFHSLSVLGSWGCANSIIV-DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPM 200

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +    K   +     +   M    +  +V T+  +INGLCK  +   A  ++ +M   G 
Sbjct: 201 LVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGF 260

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
           +P+ + + T+IDG+CK      AG M +A  ++ EM    ++P++IT+ IL+DGFC++ +
Sbjct: 261 SPSVITYNTIIDGYCK------AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           + +A  + +EM ++G++ + V + +LI+G C  GK+ EA  +  +M  +GLKP+  TY  
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNA 374

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ FCK    K    +L ++   G  P V T+N L++   K G++ +A +L   MLD G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           V P+  TYN L+ G C+ GN ++  KL  E    GL +D   Y  LV    K  + R
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR 491


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 206/382 (53%), Gaps = 8/382 (2%)

Query: 58  PGLVLDALMIVYV-DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P  V   LM+V   ++G + +A +    + +  F +    C  +ID   +       +G+
Sbjct: 222 PDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++++ G +P+V  F  L++ LCK+G IK A  + +E  +RG      +  TLI+G CK
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341

Query: 177 AKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               ++ FRL   ++   G +P+V+TY+A+ING CKE++L+ AE+LL  M E+GL PN  
Sbjct: 342 KGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTN 401

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +TTLIDGHCK       G+   A +++D M   G +P+  TY  ++DG CK+G L+ A 
Sbjct: 402 TYTTLIDGHCK------VGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAY 455

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  ++   G++ D V +T L+S  CR      +     +MLKVG  PD  +YT +I  F
Sbjct: 456 RLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTF 515

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+    K   RL +E  S G +P  +TY +++ G C++G    A  L   M + G  PD 
Sbjct: 516 CRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDS 575

Query: 416 ITYNILLEGHCKHGNPEDFDKL 437
           ITY  L+ G CK    +D   L
Sbjct: 576 ITYGALISGLCKESKLDDARNL 597



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 183/352 (51%), Gaps = 12/352 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E+ + G  PS    N ++      G ++ A+ +F E  +RG+    VSF  ++   C  
Sbjct: 178 VEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNM 237

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             + E  R  + M   G   D  T + +I+  C++  ++       +M E GL PN + F
Sbjct: 238 GRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINF 297

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T LI+G CK G I      K+A ++++EM   G  P+  T+T L+DG CK+G  E A  +
Sbjct: 298 TALINGLCKQGSI------KQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 298 RKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
             ++++      NV  +TA+I+G+C+  K+  AE +L  M + GL P+  TYT +ID  C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G+    + L+  M  +G  P + TYNA+++GLCK G L  A  LL+ +   G+  D +
Sbjct: 412 KVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGV 471

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           TY IL+  HC+  +       F+K+  + G   D   YT+L+S   + +Q +
Sbjct: 472 TYTILMSVHCRQADTNRSLVFFNKML-KVGFTPDIHSYTTLISTFCRQKQMK 522



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 148/264 (56%), Gaps = 13/264 (4%)

Query: 174 HCKAKNLDEGFRLKSV------MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            C   N  E  +LK        M+  G+ P   T + +++       ++ AE +  EMC+
Sbjct: 158 QCMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQ 217

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG++P+ V F  ++   C  GR+       EA + ++ M   G   D  T T+++D FC+
Sbjct: 218 RGVSPDCVSFKLMVVACCNMGRV------LEAERWLNAMVERGFIVDNATCTLIIDAFCQ 271

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           +G +   +    +M++ G+  + + FTALI+G C+ G + +A  +L EM++ G KP+  T
Sbjct: 272 KGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYT 331

Query: 348 YTMVIDCFCKNGDTKTGFRL-LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           +T +ID  CK G T+  FRL LK +RSDG+ P V TY A++NG CK  +L  A MLL  M
Sbjct: 332 HTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRM 391

Query: 407 LDLGVVPDDITYNILLEGHCKHGN 430
            + G+VP+  TY  L++GHCK GN
Sbjct: 392 QEQGLVPNTNTYTTLIDGHCKVGN 415



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 33/339 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID + +          +L+++   GY P+V+ +  +++  CKE K+  A+M+     ++
Sbjct: 335 LIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQ 394

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++ TLI+GHCK  N    + L  +M   G  P++YTY+A+I+GLCK+  LD+A
Sbjct: 395 GLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEA 454

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNG-------------RIDMAGD---------- 255
             LL+++   GL  + V +T L+  HC+               ++    D          
Sbjct: 455 YRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLIST 514

Query: 256 ------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 MKE+ ++ +E  + GL P K TYT ++ G+C+ G+   A+ + + M   G   D
Sbjct: 515 FCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPD 574

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           ++ + ALISG C+  K+ +A  +   M+  GL P + T   +   +CK  D+ T   +L 
Sbjct: 575 SITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLD 634

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            +        + T N L+  LC  G+L  A +    +LD
Sbjct: 635 RLEKR---QWIRTVNTLVRKLCSEGKLDMAALFFHKLLD 670



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 109/210 (51%), Gaps = 4/210 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G +KEA  +V EM   GL P   T   +LD     G +E A ++  EM +RG+  D V+F
Sbjct: 168 GKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSF 227

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++   C  G+V+EAER L  M++ G   D+AT T++ID FC+ G          +M  
Sbjct: 228 KLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVE 287

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P V  + AL+NGLCK G +K A  LL+ M+  G  P+  T+  L++G CK G  E 
Sbjct: 288 MGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEK 347

Query: 434 ----FDKLQSEKGLVSDYACYTSLVSKSSK 459
               F KL    G   +   YT++++   K
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCK 377



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +E  N     ++  F   GK+ EA  M+ EM   GL P   T   V+D     G  + 
Sbjct: 148 KNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEI 207

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +  EM   G  P   ++  ++   C  G++  A   L+ M++ G + D+ T  ++++
Sbjct: 208 AENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIID 267

Query: 424 GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             C+ G        F K+  E GL  +   +T+L++
Sbjct: 268 AFCQKGYVNRVVGYFWKM-VEMGLAPNVINFTALIN 302



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ +  +  + ++G +P    +  L+  LCKE K+ DA+ ++D    +GL    V+  TL
Sbjct: 557 SLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTL 616

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              +CK    D+     +V++    R  + T + L+  LC E +LD A L  H++ ++  
Sbjct: 617 AYEYCKK---DDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFHKLLDKEP 673

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             N V     ++   ++ +  +  ++ E
Sbjct: 674 NVNRVTLLGFMNKCYESNKYGLVSELSE 701


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 142/480 (29%), Positives = 239/480 (49%), Gaps = 48/480 (10%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVD 71
           +++ L   K + + R +L   V  +   S + +F S+    G      ++ D L++ YV+
Sbjct: 113 LLNLLANAKHYPKIRSILDSFVKGETNCSISLIFHSLSVCSGQFCANSIIADMLVLAYVE 172

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
                  ++ F+    + +++    C  L+  +++ N        Y E++    SP++  
Sbjct: 173 NSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLIT 232

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA-------------- 177
           FN +++ LCK GK+  A  V D+    G     V++NTLI+G+CK               
Sbjct: 233 FNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILK 292

Query: 178 ------------------------KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
                                   +NL    ++   M+  G++P V TY++L+NGLC E 
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEG 352

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           +L++A++LL EM    L PN + +  LI+G+CK   ++      EAR++ D +   GL P
Sbjct: 353 KLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLE------EARELFDNIGKQGLTP 406

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           + IT+  LL G+CK G +E A  ++K M+++G   +   +  LI GFCR GK+ E + +L
Sbjct: 407 NVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLL 466

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EM   G+K D  TY ++I  +C+  + K   RL+ EM   G  P+  TYN L+NG C  
Sbjct: 467 NEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCME 526

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACY 450
           G L+ A  L   M   G   + +TYN+L++G+C+ G  ED + L +   EKGL+ +   Y
Sbjct: 527 GNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586



 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 184/317 (58%), Gaps = 6/317 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++   SP+   FNVL+   CK+  +  A  VF+E   +GL  T V++N+L+NG C   
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEG 352

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L+E   L   M  S ++P+V TY+ALING CK+  L++A  L   + ++GLTPN + F 
Sbjct: 353 KLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFN 412

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G+CK G+      M+EA  +   M   G  P+  TY  L+ GFC+EG +E   ++ 
Sbjct: 413 TLLHGYCKFGK------MEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLL 466

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  RG++ D V +  LIS +C   +  +A R++ EML  GLKP   TY ++++ +C  
Sbjct: 467 NEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCME 526

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    L K+M  +G    V TYN L+ G C+ G+L++AN LL+ ML+ G++P+  TY
Sbjct: 527 GNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586

Query: 419 NILLEGHCKHGNPEDFD 435
            I+ E   + G   D +
Sbjct: 587 EIIKEEMMEKGFLPDIE 603



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 181/346 (52%), Gaps = 41/346 (11%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           DY Y  SV   N L+  L KE +    + V+ E  +R +                     
Sbjct: 188 DYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKIS-------------------- 227

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
                          P++ T++ +INGLCK  +L+ A  ++ +M   G  PN V + TLI
Sbjct: 228 ---------------PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLI 272

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           DG+CK GR+   G M +A  I+ EM  N ++P+ +T+ +L+DGFCK+ +L +AL + +EM
Sbjct: 273 DGYCKMGRV---GKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEM 329

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             +G++   V + +L++G C  GK+ EA+ +L EML   LKP+  TY  +I+ +CK    
Sbjct: 330 QSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLL 389

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L   +   G  P V T+N L++G CK G+++ A +L   ML+ G +P+  TYN L
Sbjct: 390 EEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCL 449

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           + G C+ G  E+   L +E   +G+ +D   Y  L+S   + ++ +
Sbjct: 450 IVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPK 495


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 206/382 (53%), Gaps = 8/382 (2%)

Query: 58  PGLVLDALMIVYV-DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P  V   LM+V   ++G + +A +    + +  F +    C  +ID   +       +G+
Sbjct: 222 PDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++++ G +P+V  F  L++ LCK+G IK A  + +E  +RG      +  TLI+G CK
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341

Query: 177 AKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               ++ FRL   ++   G +P+V+TY+A+ING CKE++L+ AE+LL  M E+GL PN  
Sbjct: 342 KGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTN 401

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +TTLIDGHCK       G+   A +++D M   G +P+  TY  ++DG CK+G L+ A 
Sbjct: 402 TYTTLIDGHCK------VGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAY 455

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  ++   G++ D V +T L+S  CR      +     +MLKVG  PD  +YT +I  F
Sbjct: 456 RLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXF 515

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+    K   RL +E  S G +P  +TY +++ G C++G    A  L   M + G  PD 
Sbjct: 516 CRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDS 575

Query: 416 ITYNILLEGHCKHGNPEDFDKL 437
           ITY  L+ G CK    +D   L
Sbjct: 576 ITYGALISGLCKESKLDDARNL 597



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 182/352 (51%), Gaps = 12/352 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E+ + G   S    N ++      G ++ A+ +F E  +RG+    VSF  ++   C  
Sbjct: 178 VEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNM 237

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             + E  +  + M   G   D  T + +I+  C++  ++       +M E GL PN + F
Sbjct: 238 GRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINF 297

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T LI+G CK G I      K+A ++++EM   G  P+  T+T L+DG CK+G  E A  +
Sbjct: 298 TALINGLCKQGSI------KQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 298 RKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
             ++++      NV  +TA+I+G+C+  K+  AE +L  M + GL P+  TYT +ID  C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G+    + L+  M  +G  P + TYNA+++GLCK G L  A  LL+ +   G+  D +
Sbjct: 412 KVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGV 471

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           TY IL+  HC+  +       F+K+  + G   D   YT+L+S   + +Q +
Sbjct: 472 TYTILMSVHCRQADTNRSLVFFNKML-KVGFTPDIHSYTTLISXFCRQKQMK 522



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 147/264 (55%), Gaps = 13/264 (4%)

Query: 174 HCKAKNLDEGFRLKSV------MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            C   N  E  +LK        M+  G+     T + +++       ++ AE +  EMC+
Sbjct: 158 QCMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQ 217

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG++P+ V F  ++   C  GR+       EA K ++ M   G   D  T T+++D FC+
Sbjct: 218 RGVSPDCVSFKLMVVACCNMGRV------LEAEKWLNAMVERGFIVDNATCTLIIDAFCQ 271

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           +G +   +    +M++ G+  + + FTALI+G C+ G + +A  +L EM++ G KP+  T
Sbjct: 272 KGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYT 331

Query: 348 YTMVIDCFCKNGDTKTGFRL-LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           +T +ID  CK G T+  FRL LK +RSDG+ P V TY A++NG CK  +L  A MLL  M
Sbjct: 332 HTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRM 391

Query: 407 LDLGVVPDDITYNILLEGHCKHGN 430
            + G+VP+  TY  L++GHCK GN
Sbjct: 392 QEQGLVPNTNTYTTLIDGHCKVGN 415



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 33/339 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID + +          +L+++   GY P+V+ +  +++  CKE K+  A+M+     ++
Sbjct: 335 LIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQ 394

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++ TLI+GHCK  N    + L  +M   G  P++YTY+A+I+GLCK+  LD+A
Sbjct: 395 GLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEA 454

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNG-------------RIDMAGD---------- 255
             LL+++   GL  + V +T L+  HC+               ++    D          
Sbjct: 455 YRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISX 514

Query: 256 ------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 MKE+ ++ +E  + GL P K TYT ++ G+C+ G+   A+ + + M   G   D
Sbjct: 515 FCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPD 574

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           ++ + ALISG C+  K+ +A  +   M+  GL P + T   +   +CK  D+ T   +L 
Sbjct: 575 SITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLD 634

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            +        + T N L+  LC  G+L  A +    +LD
Sbjct: 635 RLEKR---QWIRTVNTLVRKLCSEGKLDMAALFFHKLLD 670



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 108/210 (51%), Gaps = 4/210 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G +KEA  +V EM   GL     T   +LD     G +E A ++  EM +RG+  D V+F
Sbjct: 168 GKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSF 227

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++   C  G+V+EAE+ L  M++ G   D+AT T++ID FC+ G          +M  
Sbjct: 228 KLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVE 287

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P V  + AL+NGLCK G +K A  LL+ M+  G  P+  T+  L++G CK G  E 
Sbjct: 288 MGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEK 347

Query: 434 ----FDKLQSEKGLVSDYACYTSLVSKSSK 459
               F KL    G   +   YT++++   K
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCK 377



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 16/211 (7%)

Query: 73  GFLDDAIQCFRLLRK---HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           G LD+A   +RLL K   H  +        L+    R      +L F+ ++L  G++P +
Sbjct: 449 GSLDEA---YRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDI 505

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           + +  L+   C++ ++K+++ +F+E    GL  T  ++ ++I G+C+  N     +L   
Sbjct: 506 HSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQR 565

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN-- 247
           M   G  PD  TY ALI+GLCKE++LDDA  L   M ++GL+P +V   TL   +CK   
Sbjct: 566 MSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDD 625

Query: 248 --------GRIDMAGDMKEARKIVDEMCTNG 270
                    R++    ++    +V ++C+ G
Sbjct: 626 SSTAINVLDRLEKRQWIRTVNTLVRKLCSEG 656



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ +  +  + ++G +P    +  L+  LCKE K+ DA+ ++D    +GL    V+  TL
Sbjct: 557 SLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTL 616

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              +CK    D+     +V++    R  + T + L+  LC E +LD A L  H++ ++  
Sbjct: 617 AYEYCKK---DDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFHKLLDKEP 673

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             N V     ++   ++ +  +  ++ E
Sbjct: 674 NVNRVTLLGFMNKCYESNKYGLVSELSE 701



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 5/156 (3%)

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +E  N     ++  F   GK+ EA  M+ EM   GL     T   V+D     G  + 
Sbjct: 148 KNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEI 207

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +  EM   G  P   ++  ++   C  G++  A   L+ M++ G + D+ T  ++++
Sbjct: 208 AENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIID 267

Query: 424 GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             C+ G        F K+  E GL  +   +T+L++
Sbjct: 268 AFCQKGYVNRVVGYFWKM-VEMGLAPNVINFTALIN 302


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 218/415 (52%), Gaps = 11/415 (2%)

Query: 45  LFASILETRGTHLPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           +F  +  TR   +PG  V DAL  V +DLG +++AIQCF  +++       R C  L+ +
Sbjct: 10  VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHK 69

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
             +         F+ +++  G  P+V+ +N+++  +CKEG ++ A+ +F+E   RGL   
Sbjct: 70  FAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPD 129

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V++N++I+G  K   LD+       M+     PDV TY+ALIN  CK  +L        
Sbjct: 130 TVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFR 189

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM   GL PN V ++TL+D  CK G       M++A K   +M   GL P++ TYT L+D
Sbjct: 190 EMKRNGLKPNVVSYSTLVDAFCKEGM------MQQAIKFYVDMRRVGLVPNEYTYTSLID 243

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            +CK G+L  A  +  EM++ G+E + V +TALI G C      E   +L EM+++ +K 
Sbjct: 244 AYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKV 303

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANML 402
              T+ ++ID  CKN            + +D  L A    Y A+++GLCK  Q++ A  L
Sbjct: 304 TVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTL 363

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            + M   G+VPD   Y  L++G+ K GN  +   L+    E G+  D   YTSLV
Sbjct: 364 FEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLV 418



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 42/322 (13%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  +AL+  +   G L   ++ FR ++++  +        L+D   +  +    + FY++
Sbjct: 166 ITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVD 225

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G  P+ Y +  L+   CK G + DA  + +E  + G+    V++  LI+G C  +N
Sbjct: 226 MRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWEN 285

Query: 180 LDEGFRLKSVM------------------------------------EGSGMRPDVYTYS 203
             EG  L   M                                       G++ +   Y+
Sbjct: 286 PTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYT 345

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           A+I+GLCK N+++ A  L  +M ++GL P+   +T+L+DG+ K G +       EA  + 
Sbjct: 346 AMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNV------LEALALR 399

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D+M   G+  D + YT L+ G      L+ A    +EMI  GI  D V   +++      
Sbjct: 400 DKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 459

Query: 324 GKVVEAERMLREMLKVGLKPDD 345
           G + EA  +   ++K  L   D
Sbjct: 460 GCINEAVELQSYLMKHQLLTSD 481


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  234 bits (597), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 241/495 (48%), Gaps = 55/495 (11%)

Query: 2   HFRLT--LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP- 58
            FR++  L     ++H L   K +S+ R  L  +V K    + +S+F S+L   G   P 
Sbjct: 71  EFRISYGLETTGKVLHLLANSKKYSKVRSFLDKLV-KNEKHTVSSVFHSLL--LGGDRPC 127

Query: 59  --GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
              L+ D L++ YV    +  A + FR ++ + F++    C  L+  +++ N        
Sbjct: 128 ANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYV 187

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E++     P++  FN+ ++ LCK GK+  A+ V ++    G     V++NTLI+GHCK
Sbjct: 188 YKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCK 247

Query: 177 AKNLDEGFRLKSV--------------------------------------MEGSGMRPD 198
             +  + +R  ++                                      M+  G++P+
Sbjct: 248 KGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPN 307

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           + TY++LINGL    +LD+A  L  +M   GL PN V F  LI+G CK   I      KE
Sbjct: 308 IVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMI------KE 361

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           ARK+ D++    L P+ IT+  ++D FCK G +E    +   M+  GI  +   +  LI+
Sbjct: 362 ARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIA 421

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G CR   V  A+++L EM    LK D  TY ++I  +CK+G+     +LL EM + G  P
Sbjct: 422 GLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKP 481

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              TYN LM+G C  G LK A  +   M   G   + +TYN+L++G CK G  ED ++L 
Sbjct: 482 NHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLL 541

Query: 439 S---EKGLVSDYACY 450
           +   EKGL  +   Y
Sbjct: 542 NEMLEKGLNPNRTTY 556



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 149/300 (49%), Gaps = 57/300 (19%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+   G  P++  +N L++ L   GK+ +A  ++D+    GL    V+FN LING CK
Sbjct: 296 FEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCK 355

Query: 177 AK-----------------------------------NLDEGFRLKSVMEGSGMRPDVYT 201
            K                                    ++EGF L + M   G+ P+V T
Sbjct: 356 KKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVST 415

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ LI GLC+   +  A+ LL+EM    L  + V +  LI G CK+      G+  +A K
Sbjct: 416 YNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKD------GEPSKAEK 469

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++ EM   G+ P+ +TY  L+DG+C EG+L++AL +R +M K G   + V +  LI GFC
Sbjct: 470 LLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFC 529

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + GK+ +A R+L EML+ GL P+  TY +V              RL  EM   G +P +E
Sbjct: 530 KTGKLEDANRLLNEMLEKGLNPNRTTYDVV--------------RL--EMLEKGFIPDIE 573



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 76/239 (31%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  + +++  G  P++  FN L++  CK+  IK+A+ +FD+  ++ L   A++FNT+I+
Sbjct: 327 AIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMID 386

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRP----------------------------------- 197
             CKA  ++EGF L + M   G+ P                                   
Sbjct: 387 AFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKA 446

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC------------ 245
           DV TY+ LI G CK+     AE LL EM   G+ PN V + TL+DG+C            
Sbjct: 447 DVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVR 506

Query: 246 -----------------------KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
                                  K G+++      +A ++++EM   GLNP++ TY ++
Sbjct: 507 TQMEKEGKRANVVTYNVLIKGFCKTGKLE------DANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLI  + R            E+ +Y     V  +N+L+   CK+G+   A+ +  E    
Sbjct: 418 CLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNV 477

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    V++NTL++G+C   NL    ++++ ME  G R +V TY+ LI G CK  +L+DA
Sbjct: 478 GVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDA 537

Query: 219 ELLLHEMCERGLTPN----DVI--------FTTLIDGHCKN 247
             LL+EM E+GL PN    DV+        F   I+GH  N
Sbjct: 538 NRLLNEMLEKGLNPNRTTYDVVRLEMLEKGFIPDIEGHLYN 578


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 238/472 (50%), Gaps = 49/472 (10%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSA---SLFASILETRGTHLPGLVLDALMIVY 69
           MVH  V  +  S A+ L+  ++ + G+       +L +S+    GT+   LV D L+  Y
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTN--NLVFDLLIRTY 58

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           V    L +  + FR+LR   + +    C  L+  +++ +   +    + E++  G   +V
Sbjct: 59  VQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNV 118

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y  N++++ LCK+GK  D +    E    G++A  V++NTLI  +C+   L+E F + + 
Sbjct: 119 YTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNS 178

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G++P ++TY+A+INGLCK+ R   A+ +L EM   GL+P+   + TL+   C+   
Sbjct: 179 MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRR-- 236

Query: 250 IDMAGDMKEARKIVDEMCTN-----------------------------------GLNPD 274
                +  EA++I  EM                                      GL PD
Sbjct: 237 ----DNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPD 292

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + YT+L+ G+C+ G++  AL IR EM+++G  LD +A+  +++G C+   + +A+++  
Sbjct: 293 NVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFD 352

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM++ G  PD  T+T +I   C++G+      L   M      P +  YN L++G CK G
Sbjct: 353 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 412

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGL 443
           +++ A+ L D M+   + P+ ITY IL+  +C  G+  +  +L     EKG+
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGI 464



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 178/328 (54%), Gaps = 6/328 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L ++ ++  +G  P   ++ VLMH  C+ G + +A  + DE  ++G     +++NT++N
Sbjct: 277 ALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN 336

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK K L +  +L   M   G  PD YT++ LI+G C++  +  A  L   M +R + P
Sbjct: 337 GLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKP 396

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + TLIDG CK       G+M++A ++ D M +  + P+ ITY IL++ +C  G + 
Sbjct: 397 DIVAYNTLIDGFCK------VGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVS 450

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +   MI++GI+   V    +I G+CR G   +A+  L  M+  G+ PD  +Y  +I
Sbjct: 451 EAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 510

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + F +  +    F  + +M  +G LP + TYN +MNG C+ G+++ A ++L  M++ G+ 
Sbjct: 511 NGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGIN 570

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE 440
           PD  TY  L+ GH    N  +  +   E
Sbjct: 571 PDRSTYTALINGHVTQDNLNEAFRFHDE 598



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 9/382 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           +     +  +F  +L  R   +P LV   +L+ V+     LD A+  FR ++K       
Sbjct: 236 RDNFSEAKEIFGEML--RQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDN 293

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                L+    R       L    E+L+ G    V  +N +++ LCKE  + DA  +FDE
Sbjct: 294 VIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDE 353

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             +RG      +F TLI+GHC+  N+ +   L   M    ++PD+  Y+ LI+G CK   
Sbjct: 354 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 413

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           ++ A  L   M  R + PN + +  LI+ +C        G + EA ++ D M   G+ P 
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILINAYCS------VGHVSEAFRLWDVMIEKGIKPT 467

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +T   ++ G+C+ GD   A +    MI +G+  D++++  LI+GF R   + +A   + 
Sbjct: 468 LVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWIN 527

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M K GL PD  TY +V++ FC+ G  +    +L++M   G  P   TY AL+NG     
Sbjct: 528 KMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQD 587

Query: 395 QLKNANMLLDTMLDLGVVPDDI 416
            L  A    D ML  G  PDD+
Sbjct: 588 NLNEAFRFHDEMLQRGFAPDDV 609


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 255/495 (51%), Gaps = 43/495 (8%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSAS--LFASIL----ETRGT 55
            F  TL +   +VH  VA      A+ L+    +K  +  S S  LF  +L    +  G+
Sbjct: 110 QFHPTLESLCIVVHLSVASNDIQTAKRLVFEFCAKPKIDVSKSFHLFTEMLIYTYKDWGS 169

Query: 56  HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           H   LV D    V V+ GF+ +A + F  L ++   +    C   + R+   N   + + 
Sbjct: 170 H--PLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRL-SCNFEGIKIA 226

Query: 116 F--YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
              + E  + G   +    N+++H LC+ GK+++A  +  +   RG     VS+  +++G
Sbjct: 227 VKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSG 286

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +C+   LD+  +L   ++G G++PD Y Y+ +I  LCK   + +AE LL  M + G+ P+
Sbjct: 287 YCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPD 346

Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
           +V++TT+I G CK G +  A                             G M EAR++ +
Sbjct: 347 NVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFN 406

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   GL PD++TYT L+DG+CK G+++ A  +  +M+++G+  + V +TAL  G C+ G
Sbjct: 407 EMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNG 466

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++  A  +L EM + GL+P+  TY  +++  CK G+ +   +L++EM   G  P   TY 
Sbjct: 467 EIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYT 526

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EK 441
            LM+  CK G++  A+ LL  ML+  + P  +T+N+L+ G C  G  ED ++L     EK
Sbjct: 527 TLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEK 586

Query: 442 GLVSDYACYTSLVSK 456
           G++ +   + SL+ +
Sbjct: 587 GIMPNATTFNSLMKQ 601



 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 195/344 (56%), Gaps = 9/344 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y++N ++  LCK G++ +A+ +     K G+    V + T+I+G CK  N+   
Sbjct: 307 GLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAA 366

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M    + PD+ TY+++I+G+CK  ++ +A  + +EM  +GL P++V +T LIDG
Sbjct: 367 CKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDG 426

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK      AG+MKEA  + ++M   GL P+ +TYT L DG CK G+++ A ++  EM +
Sbjct: 427 YCK------AGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSR 480

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++ +   +  +++G C+ G + +  +++ EM   G  PD  TYT ++D +CK G+   
Sbjct: 481 KGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAK 540

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL+ M +    P + T+N LMNG C  G L++   L++ ML+ G++P+  T+N L++
Sbjct: 541 AHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMK 600

Query: 424 GHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            +C   N     +  K   ++G++ D   Y  L+    K R  +
Sbjct: 601 QYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMK 644



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 181/331 (54%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  +  ++H +CK GK+ +A+ +F+E   +GL    V++  LI+G+CKA  + E F +
Sbjct: 380 PDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSV 439

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G+ P+V TY+AL +GLCK   +D A  LLHEM  +GL PN   + T+++G CK
Sbjct: 440 HNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCK 499

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G++++  K+++EM   G  PD ITYT L+D +CK G++  A ++ + M+ + +
Sbjct: 500 ------IGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL 553

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +   V F  L++GFC  G + + ER++  ML+ G+ P+  T+  ++  +C   + +    
Sbjct: 554 QPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTE 613

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + K M   G +P   TYN L+ G CK   +K A  L   M++ G      TY+ L+ G  
Sbjct: 614 IYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFY 673

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K     +  KL  E    GLV++   Y   V
Sbjct: 674 KRKKFVEARKLFEEMRKHGLVAEKDIYDIFV 704



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+VY +N +++ LCK G I+    + +E    G +   +++ TL++ +CK   + + 
Sbjct: 482 GLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKA 541

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L  +M    ++P + T++ L+NG C    L+D E L+  M E+G+ PN   F +L+  
Sbjct: 542 HELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQ 601

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C      +  +M+   +I   M   G+ PD  TY IL+ G CK  +++ A  + KEM++
Sbjct: 602 YC------IKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVE 655

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G  +    + ALI GF +  K VEA ++  EM K GL  +   Y + +D   + G+ + 
Sbjct: 656 KGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEI 715

Query: 364 GFRLLKEMRSD 374
              L  E  ++
Sbjct: 716 TLELCDEFMTE 726



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 141/279 (50%), Gaps = 6/279 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G +P+V  +  L   LCK G+I  A  +  E  ++GL     ++NT++NG CK  
Sbjct: 442 QMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIG 501

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+++  +L   M+ +G  PD  TY+ L++  CK   +  A  LL  M  + L P  V F 
Sbjct: 502 NIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFN 561

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C      M+G +++  ++++ M   G+ P+  T+  L+  +C + ++ +  +I 
Sbjct: 562 VLMNGFC------MSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIY 615

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M  RG+  D+  +  LI G C+   + EA  + +EM++ G     ATY  +I  F K 
Sbjct: 616 KAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKR 675

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
                  +L +EMR  G +   + Y+  ++   + G  +
Sbjct: 676 KKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWE 714



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G  P+   FN LM + C +  ++    ++     RG+   + ++N LI GHCKA+N
Sbjct: 583 MLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARN 642

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E + L   M   G      TY ALI G  K  +  +A  L  EM + GL     I+  
Sbjct: 643 MKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDI 702

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            +D + + G  ++  ++       DE  T       + Y     G    G +ES  DI
Sbjct: 703 FVDVNYEEGNWEITLEL------CDEFMTELSGTIFVVYICFFIG----GSVESNFDI 750


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 199/359 (55%), Gaps = 21/359 (5%)

Query: 111 TVTLGFYL------------EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           TV  GFY             E+L+    P V  FN L+H LCK+G + +++ +FD+  KR
Sbjct: 265 TVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKR 324

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+     +FN  I G CK  +LD   RL   +   G+RPDV TY+ +I GLC+++R+ +A
Sbjct: 325 GVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEA 384

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           E  LH+M   G  PND  + ++IDG+CK G +       +A +I+ +    G  PD+ TY
Sbjct: 385 EECLHKMVNGGFEPNDFTYNSIIDGYCKKGMV------VDANRILKDAVFKGFKPDEFTY 438

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L++GFC++GD + A+ + K+ + +G+    + +  LI G C+ G ++ A +++ EM +
Sbjct: 439 CSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAE 498

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G KPD  TY ++I+  CK G       L+ +  + G +P + TYN L++G C+  +L +
Sbjct: 499 KGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDS 558

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           A  L++ M   G+ PD ITYN LL G CK    E   +  K  +EKG   +   Y +++
Sbjct: 559 AIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTII 617



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 187/360 (51%), Gaps = 14/360 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +  L    L    E+ + G  P ++ +N++++ LCK G + DA  +  +   +G
Sbjct: 476 LIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG 535

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++NTL++G+C+   LD    L + M   GM PDV TY+ L+NGLCK  + ++  
Sbjct: 536 CIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVM 595

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M E+G  PN + + T+I+  C + +++      EA  ++ EM + GL PD +++ 
Sbjct: 596 EIFKAMTEKGCAPNIITYNTIIESLCNSKKVN------EAVDLLGEMKSKGLTPDVVSFG 649

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            L+ GFCK GDL+ A  + + M K+  +      +  +IS F     +  A R+  EM K
Sbjct: 650 TLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKK 709

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G  PD+ TY ++ID FCK G+   G++ L E    G +P++ T+  ++N LC   +++ 
Sbjct: 710 NGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQE 769

Query: 399 ANMLLDTMLDLGVVPDDITYNILLE----GHCK-HGNPEDFDKLQSEKGLVSDYACYTSL 453
           A  ++  M+   +VPD  T N + E    GH   H     +D ++ +K L   +  + SL
Sbjct: 770 AVGIIHLMVQKDIVPD--TVNTIFEADKKGHITYHAYEFLYDGVRDKKILKKKHPNWNSL 827



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 183/419 (43%), Gaps = 85/419 (20%)

Query: 105 MRTNLPTVTL-GFYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
           MR+NL    L G Y+E +  YG                ++GKI++A   F+         
Sbjct: 145 MRSNLDNTLLEGVYVEAMRFYG----------------RKGKIQEAVDTFERMDLFNCDP 188

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           +  S+N ++N   +    ++  ++   M+   +  DVYTY+  I   C+  R   A  LL
Sbjct: 189 SVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLL 248

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------------------------- 253
             M   G   N V + T++ G  + G  D A                             
Sbjct: 249 RNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKK 308

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI---------------- 297
           G + E+ ++ D++   G+ P+  T+ I + G CKEG L+ A+ +                
Sbjct: 309 GFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTY 368

Query: 298 --------RK-----------EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
                   RK           +M+  G E ++  + ++I G+C+ G VV+A R+L++ + 
Sbjct: 369 NTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVF 428

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G KPD+ TY  +++ FC++GD      + K+    G  P++  YN L+ GLC+ G +  
Sbjct: 429 KGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILP 488

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           A  L++ M + G  PD  TYN+++ G CK G   D + L  +   KG + D   Y +LV
Sbjct: 489 ALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLV 547



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 8/265 (3%)

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G +  ++TY +++  L    + ++ E LL EM  R    N ++    ++     GR   
Sbjct: 113 QGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEM--RSNLDNTLLEGVYVEAMRFYGR--- 167

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            G ++EA    + M     +P   +Y  +++   + G    A  +   M  + +E D   
Sbjct: 168 KGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYT 227

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +T  I  FCR G+   A R+LR M  +G   +   Y  V+  F + GD      L  EM 
Sbjct: 228 YTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEML 287

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
                P V T+N L++ LCK G +  +  L D +L  GV P+  T+NI ++G CK G+ +
Sbjct: 288 ECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLD 347

Query: 433 DFDKL---QSEKGLVSDYACYTSLV 454
              +L    S +GL  D   Y +++
Sbjct: 348 RAVRLLGCVSREGLRPDVVTYNTVI 372


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 153/464 (32%), Positives = 236/464 (50%), Gaps = 55/464 (11%)

Query: 2   HFRLT--LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG 59
            +RL+  L   S ++HFL   K +S+ R  L   V K    + +S+F S+L   G   PG
Sbjct: 71  EYRLSYGLEPTSKVLHFLANSKRYSKVRSFLDSFV-KNEKHTVSSVFHSLLLDGGR--PG 127

Query: 60  ---LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
              L++D L++ YV            + L  H          C  +   R          
Sbjct: 128 ATALIIDMLVLAYV------------KNLELH----------CAYEAFTRAK-------- 157

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
                DYG+  S+   N L+  L KE KI D + V+ E  KR +H    +FN  ING C+
Sbjct: 158 -----DYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCR 212

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN---RLDDAELLLHEMCERGLTPN 233
           A  L++       M+  G+ P+V TY+ L++G CK     ++  AE  + EM    + PN
Sbjct: 213 AGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPN 272

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           +V F TLIDG CK+  +        A+K  +EM   GL P+ +TY  L++G C  G LE 
Sbjct: 273 EVTFNTLIDGFCKDENV------AAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEE 326

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+D+  +M+  G++ + V + ALI+GFC+   + EA ++  ++ K  L P+  T+  +ID
Sbjct: 327 AIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMID 386

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +CK G  + GF L   M  +G LP V TYN L+ GLC+   L+ A  LL+ M + G+  
Sbjct: 387 AYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKG 446

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLV 454
           D +TYNIL++G CK+    + +KL +E    GL  ++  Y +L+
Sbjct: 447 DVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLM 490



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 171/307 (55%), Gaps = 6/307 (1%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
            F  E+L     P+   FN L+   CK+  +  A+  F+E  K+GL    V++N+LING 
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGL 318

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C    L+E   L   M G G++P++ TY+ALING CK+  + +A  +  ++ ++ L PN 
Sbjct: 319 CNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNV 378

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           + F T+ID +CK G       M+E   +   M   G+ P+  TY  L+ G C++ DL++A
Sbjct: 379 ITFNTMIDAYCKEGM------MEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAA 432

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            ++  EM  +G++ D V +  LI G C+  K   AE++L EM  +GLKP+  TY  ++D 
Sbjct: 433 KELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDG 492

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +C  G  K    +   M  +   P V TYN L+ G CK  +L+ AN LL+ ML+ G+ P+
Sbjct: 493 YCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPN 552

Query: 415 DITYNIL 421
             TY+I+
Sbjct: 553 RTTYDIV 559


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 206/376 (54%), Gaps = 32/376 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+  +L  G +P+VY +N+L+  LC  G  K+A  +  +    G     V++NTL+    
Sbjct: 177 FFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 236

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +A  +D   RL  +M   G++P++ T+++++NG+CK  +++DA  +  EM   GL P+ V
Sbjct: 237 RAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGV 296

Query: 236 IFTTLIDGHCKNG-----------------------------RIDMAGDMKEARKIVDEM 266
            + TL+ G+CK G                              +  AG+++ A  +V +M
Sbjct: 297 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQM 356

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL  +++T+T L+DGFCK+G L+ AL   + M +  I+   V + ALI+G+C  G++
Sbjct: 357 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRM 416

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA  +L EM   GLKPD  TY+ +I  +CKN DT + F L ++M   G LP   TY++L
Sbjct: 417 DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 476

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGL 443
           +  LC   +L +A++L   M+ LG+ PD+ TY  L++GHCK GN E    L     + G+
Sbjct: 477 IRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGV 536

Query: 444 VSDYACYTSLVSKSSK 459
           + D   Y+ L++  SK
Sbjct: 537 LPDVVTYSVLINGLSK 552



 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 185/332 (55%), Gaps = 31/332 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  FN +++ +CK GK++DA+ VFDE  + GL    VS+NTL+ G+CKA    E 
Sbjct: 255 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEA 314

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M   G+ PDV T+++LI+ +CK   L+ A  L+ +M ERGL  N+V FT LIDG
Sbjct: 315 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDG 374

Query: 244 HCKNGRID-----------------------------MAGDMKEARKIVDEMCTNGLNPD 274
            CK G +D                             M G M EAR+++ EM   GL PD
Sbjct: 375 FCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 434

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY+ ++  +CK  D  SA ++ ++M+++G+  D + +++LI   C   ++ +A  + +
Sbjct: 435 VVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFK 494

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M+K+GL+PD+ TYT +ID  CK G+ ++   L  +M   G LP V TY+ L+NGL K  
Sbjct: 495 NMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSA 554

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   A  LL  +     +P +  Y+ L+  HC
Sbjct: 555 RAMEAQQLLFKLYHEDPIPANTKYDALM--HC 584



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 179/360 (49%), Gaps = 24/360 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+   G  P V  F  L+H +CK G ++ A  +  +  +RGL    V+F  LI+
Sbjct: 314 ALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALID 373

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   LD+       M+   ++P V  Y+ALING C   R+D+A  LLHEM  +GL P
Sbjct: 374 GFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 433

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++T+I  +CKN       D   A ++  +M   G+ PD ITY+ L+   C E  L 
Sbjct: 434 DVVTYSTIISAYCKN------CDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLS 487

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  + K MIK G++ D   +T+LI G C+ G V  A  +  +M+K G+ PD  TY+++I
Sbjct: 488 DAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLI 547

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN---------------GLCKHGQLK 397
           +   K+       +LL ++  +  +PA   Y+ALM+               G C  G + 
Sbjct: 548 NGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMN 607

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
            A+ +  +MLD     D   Y++L+ GHC+ GN      F K   + G   +     SL+
Sbjct: 608 EADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLI 667



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 185/437 (42%), Gaps = 92/437 (21%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
            L+H++     +  + +L   + E RG  +  +   AL+  +   GFLDDA+   R +++
Sbjct: 335 SLIHVMCKAGNLERAVTLVRQMRE-RGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQ 393

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
                    CR                            PSV  +N L++  C  G++ +
Sbjct: 394 ---------CR--------------------------IKPSVVCYNALINGYCMVGRMDE 418

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A+ +  E   +GL    V+++T+I+ +CK  +    F L   M   G+ PD  TYS+LI 
Sbjct: 419 ARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIR 478

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
            LC E RL DA +L   M + GL P++  +T+LIDGHCK G ++       A  + D+M 
Sbjct: 479 VLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVE------SALSLHDKMV 532

Query: 268 TNGLNPDKITYTILLDG------------------------------------------- 284
             G+ PD +TY++L++G                                           
Sbjct: 533 KAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKS 592

Query: 285 -------FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
                  FC +G +  A  + + M+ R   LD   ++ LI G CR G V++A    ++ML
Sbjct: 593 VLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQML 652

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G  P+  +   +I    +NG      ++++++ +   L   E   AL++     G + 
Sbjct: 653 QGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVD 712

Query: 398 NANMLLDTMLDLGVVPD 414
               +L  M   G++P 
Sbjct: 713 AVLDVLHGMAKDGLLPS 729



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 137/267 (51%), Gaps = 14/267 (5%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G  P V  Y+A++  L  +  L  A      M   G+ PN   +  L+   C  GR    
Sbjct: 151 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALC--GR---- 203

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G  KEA  I+ +M   G  P+ +TY  L+  F + G+++ A  +   M + G++ + V F
Sbjct: 204 GHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTF 263

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            ++++G C+ GK+ +A ++  EM++ GL PD  +Y  ++  +CK G +     +  EM  
Sbjct: 264 NSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ 323

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P V T+ +L++ +CK G L+ A  L+  M + G+  +++T+  L++G CK G  + 
Sbjct: 324 KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD- 382

Query: 434 FDKLQSEKGLVS-----DYACYTSLVS 455
            D L + +G+          CY +L++
Sbjct: 383 -DALLAVRGMKQCRIKPSVVCYNALIN 408


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 188/338 (55%), Gaps = 14/338 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  Y FN+L+  LCKEG+I +AQ V     KRG     V++N L+ G+C  +N+ E   L
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G+ PDV  Y+ LI+G CK   +D+A +L  E+C + L P    + +LIDG C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +GRI         +K++DEM  +   PD +TY IL+D  CKEG +  AL +   M+K+G+
Sbjct: 383 SGRI------SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV 436

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + + V + A++ G+C    V  A+ +   M+K GL+PD   Y ++I+ +CK         
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L KEMR    +P + +YN+L++GLC  G++ +   LLD M D G  PD ITYNILL+  C
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC 556

Query: 427 KHGNPEDFDKL-----QSEKGLVSDYACYTSLVSKSSK 459
           K    + FDK      Q  +G+  D+    ++V    K
Sbjct: 557 K---TQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCK 591



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 176/359 (49%), Gaps = 43/359 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +NVL+   CK   + +A ++F E   + L  T  S+N+LI+G C +  +   
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M GS   PDV TY+ LI+ LCKE R+ +A  +L  M ++G+ PN V +  ++DG
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C    +++A D      I + M  +GL PD + Y +L++G+CK   ++ A+ + KEM  
Sbjct: 450 YCLRNNVNVAKD------IFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +  D  ++ +LI G C  G++   + +L EM   G  PD  TY +++D FCK      
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDK 563

Query: 364 GFRLLKE--------------------------MRSDG--HL------PAVETYNALMNG 389
              L ++                          M  D   HL      P V+TY  L+N 
Sbjct: 564 AISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINA 623

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           LCK G    A +LL  M D    PD IT+ I++    +    +  +KL+ E   +GLV+
Sbjct: 624 LCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVN 682



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 178/390 (45%), Gaps = 41/390 (10%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA+ CF  + + +   P      L+  ++R       +  + ++   G SPS+  F +
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++    +     A  +     K G     V+FNT+ING C    + +       +   G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              D +TY  LINGL K  ++  A  LL EM +  + PN V+++ LIDG CK+G +    
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFV---- 211

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDG------------------------------ 284
              +A  +  ++   G+  D +TY  L+DG                              
Sbjct: 212 --SDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 285 -----FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
                 CKEG +  A  +   M KRG + D V + AL+ G+C    V EA  +   M+K 
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL+PD   Y ++ID +CK         L KE+ +   +P + +YN+L++GLC  G++ + 
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             LLD M      PD +TYNIL++  CK G
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEG 419



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 183/393 (46%), Gaps = 44/393 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +       L    E+      P++ +++ L+  LCK+G + DA  +  + G+RG
Sbjct: 166 LINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERG 225

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +   AV++N+LI+G C      E  +L + M    + PD YT++ LI+ LCKE R+ +A+
Sbjct: 226 ILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQ 285

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L  M +RG  P+ V +  L++G+C    +       EAR++ + M   GL PD + Y 
Sbjct: 286 GVLAMMSKRGEKPDIVTYNALMEGYCSRENV------HEARELFNRMVKRGLEPDVLNYN 339

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +L+DG+CK   ++ A+ + KE+  + +     ++ +LI G C  G++   +++L EM   
Sbjct: 340 VLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS 399

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM------------ 387
              PD  TY ++ID  CK G       +L  M   G  P + TYNA+M            
Sbjct: 400 AQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459

Query: 388 -----------------------NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                                  NG CK   +  A +L   M    ++PD  +YN L++G
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            C  G      +L  E    G   D   Y  L+
Sbjct: 520 LCNLGRIPHVQELLDEMCDSGQSPDVITYNILL 552



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 7/276 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       LG  + ++  G  P++  +N +M   C    +  A+ +F+   K G
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++N LING+CK + +DE   L   M    + PD+ +Y++LI+GLC   R+   +
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQ 530

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EMC+ G +P+ + +  L+D  CK    D A  +   R+IV+     G+ PD  T  
Sbjct: 531 ELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISL--FRQIVE-----GIWPDFYTNH 583

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CK   L+ A D  K ++  G   +   +T LI+  C+ G   EA  +L +M   
Sbjct: 584 AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN 643

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
              PD  T+ ++I    +  +T    +L +EM + G
Sbjct: 644 DRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 9/284 (3%)

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +C+ +N+D+     + M      P    +  L+  + +      A  L  ++  +G++P+
Sbjct: 30  NCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPS 89

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              FT LI+ +        A  +      +  +  +G  P+ +T+  +++GFC  G +  
Sbjct: 90  IATFTILINCYFHQSHTAFAFSL------LATILKSGYQPNLVTFNTIINGFCINGMIFK 143

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           ALD  + ++ +G   D   +  LI+G  + G++  A  +L+EM K  ++P+   Y+ +ID
Sbjct: 144 ALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK+G       L  ++   G L    TYN+L++G C  G+ +    LL  M+   V P
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 414 DDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           DD T+NIL++  CK G     +    + S++G   D   Y +L+
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 219/432 (50%), Gaps = 16/432 (3%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           +SK G   +A      +E      P LV+  AL+      GF+ DA+     + +    +
Sbjct: 170 LSKNGQIKAALHLLQEMEKSSVQ-PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
            A     LID                +++     P  Y FN+L+  LCKEG+I +AQ V 
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVL 288

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
               KRG     V++N L+ G+C  +N+ E   L + M   G+ PDV  Y+ LI+G CK 
Sbjct: 289 AMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
             +D+A +L  E+C + L P    + +LIDG C +GRI         +K++DEM  +   
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI------SHVKKLLDEMHGSAQP 402

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD +TY IL+D  CKEG +  AL +   M+K+G++ + V + A++ G+C    V  A+ +
Sbjct: 403 PDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDI 462

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
              M+K GL+PD   Y ++I+ +CK         L KEMR    +P + +YN+L++GLC 
Sbjct: 463 FNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCN 522

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-----QSEKGLVSDY 447
            G++ +   LLD M D G  PD ITYNILL+  CK    + FDK      Q  +G+  D+
Sbjct: 523 LGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCK---TQPFDKAISLFRQIVEGIWPDF 579

Query: 448 ACYTSLVSKSSK 459
               ++V    K
Sbjct: 580 YTNHAIVDNLCK 591



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 176/359 (49%), Gaps = 43/359 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +NVL+   CK   + +A ++F E   + L  T  S+N+LI+G C +  +   
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M GS   PDV TY+ LI+ LCKE R+ +A  +L  M ++G+ PN V +  ++DG
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C    +++A D      I + M  +GL PD + Y +L++G+CK   ++ A+ + KEM  
Sbjct: 450 YCLRNNVNVAKD------IFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +  D  ++ +LI G C  G++   + +L EM   G  PD  TY +++D FCK      
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDK 563

Query: 364 GFRLLKE--------------------------MRSDG--HL------PAVETYNALMNG 389
              L ++                          M  D   HL      P V+TY  L+N 
Sbjct: 564 AISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINA 623

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           LCK G    A +LL  M D    PD IT+ I++    +    +  +KL+ E   +GLV+
Sbjct: 624 LCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVN 682



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 178/390 (45%), Gaps = 41/390 (10%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA+ CF  + + +   P      L+  ++R       +  + ++   G SPS+  F +
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++    +     A  +     K G     V+FNT+ING C    + +       +   G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              D +TY  LINGL K  ++  A  LL EM +  + PN V+++ LIDG CK+G +    
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFV---- 211

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDG------------------------------ 284
              +A  +  ++   G+  D +TY  L+DG                              
Sbjct: 212 --SDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 285 -----FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
                 CKEG +  A  +   M KRG + D V + AL+ G+C    V EA  +   M+K 
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL+PD   Y ++ID +CK         L KE+ +   +P + +YN+L++GLC  G++ + 
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             LLD M      PD +TYNIL++  CK G
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEG 419



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 7/276 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       LG  + ++  G  P++  +N +M   C    +  A+ +F+   K G
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++N LING+CK + +DE   L   M    + PD+ +Y++LI+GLC   R+   +
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQ 530

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EMC+ G +P+ + +  L+D  CK    D A  +   R+IV+     G+ PD  T  
Sbjct: 531 ELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISL--FRQIVE-----GIWPDFYTNH 583

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CK   L+ A D  K ++  G   +   +T LI+  C+ G   EA  +L +M   
Sbjct: 584 AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN 643

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
              PD  T+ ++I    +  +T    +L +EM + G
Sbjct: 644 DRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 9/284 (3%)

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +C+ +N+D+     + M      P    +  L+  + +      A  L  ++  +G++P+
Sbjct: 30  NCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPS 89

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              FT LI+ +        A  +      +  +  +G  P+ +T+  +++GFC  G +  
Sbjct: 90  IATFTILINCYFHQSHTAFAFSL------LATILKSGYQPNLVTFNTIINGFCINGMIFK 143

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           ALD  + ++ +G   D   +  LI+G  + G++  A  +L+EM K  ++P+   Y+ +ID
Sbjct: 144 ALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK+G       L  ++   G L    TYN+L++G C  G+ +    LL  M+   V P
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 414 DDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           DD T+NIL++  CK G     +    + S++G   D   Y +L+
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 1/132 (0%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +T      +  + +I++ G  P  Y  + ++  LCK  K+K A+         G
Sbjct: 551 LLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHG 609

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++  LIN  CK  +  E   L S ME +   PD  T+  +I  L + N  D AE
Sbjct: 610 CSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAE 669

Query: 220 LLLHEMCERGLT 231
            L  EM  RGL 
Sbjct: 670 KLREEMIARGLV 681


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/430 (31%), Positives = 222/430 (51%), Gaps = 7/430 (1%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
           F+ T+ +Y  + H L   +M+  A  +L  +V  K       +F  +  TR   +PG  V
Sbjct: 6   FKHTIESYCIVAHILFCARMYYDANRILREMVLSKAELKDCDVFDVLWSTRNVCVPGFGV 65

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            DAL  V ++    ++A+QCF  +++       R C  L+ +  R         F+ +++
Sbjct: 66  FDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMI 125

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G  P+V+ +N+++  +CKEG I+ A  +F+E   RGL    V++N++I+G+ K   LD
Sbjct: 126 GAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +       M+     PDV TY+ LIN  CK  +L        EM + GL PN V ++TL+
Sbjct: 186 DTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLV 245

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK    DM   M++A K   +M   GL P++ TYT L+D +CK G+L  A  +  EM
Sbjct: 246 DAFCKE---DM---MQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEM 299

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + G+E + V +TALI G C   ++ EAE +  +M+  G+ P+ A+YT +I  F K  + 
Sbjct: 300 SQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNM 359

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                LL EM+  G  P +  Y   +  LC   +++ A ++++ M + G+  +   Y  L
Sbjct: 360 DRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTL 419

Query: 422 LEGHCKHGNP 431
           ++ + K  NP
Sbjct: 420 MDAYFKSENP 429



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 181/412 (43%), Gaps = 42/412 (10%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G   +AS     ++ RG     +  ++++  Y  +G LDD +  F  ++         
Sbjct: 145 KEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVI 204

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+   +       L F+ E+   G  P+V  ++ L+   CKE  ++ A   + + 
Sbjct: 205 TYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDM 264

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + GL     ++ +L++ +CK  NL + FRL   M   G+  +V TY+ALI+GLC   R+
Sbjct: 265 RRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERI 324

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +AE L  +M   G+ PN   +T LI G  K      A +M  A +++DEM   G+ PD 
Sbjct: 325 KEAEELFGKMVTAGVIPNLASYTALIHGFVK------AKNMDRALELLDEMKGRGIKPDL 378

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN------------------------- 310
           + Y   +   C    +E+A  +  EM ++GI+ +                          
Sbjct: 379 LLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEE 438

Query: 311 ----------VAFTALISGFCRGGKVVEA-ERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
                     V F  LI G C+   V +A +   R     GL+ + A YT +ID  CK  
Sbjct: 439 MLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKED 498

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
             +    L ++M   G +P    Y +L++G  K G +  A  L D M ++GV
Sbjct: 499 QVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGV 550



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 129/261 (49%), Gaps = 9/261 (3%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P    + AL + L +E+  ++A     +M    + P       L+    + G+ D     
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTD----- 115

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
              ++   +M   G  P   TY I++D  CKEGD+E+A  + +EM  RG+  D V + ++
Sbjct: 116 -GMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSM 174

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I G+ + G++ +      EM  +  +PD  TY  +I+CFCK G    G    +EM+  G 
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGL 234

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P V +Y+ L++  CK   ++ A      M  LG+VP++ TY  L++ +CK GN  D  +
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFR 294

Query: 437 LQ---SEKGLVSDYACYTSLV 454
           L    S+ G+  +   YT+L+
Sbjct: 295 LADEMSQVGVEWNVVTYTALI 315



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 154/348 (44%), Gaps = 65/348 (18%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  + L+  +   G L   ++ FR +++   +        L+D   + ++    L FY++
Sbjct: 204 ITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVD 263

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC---- 175
           +   G  P+ + +  L+   CK G + DA  + DE  + G+    V++  LI+G C    
Sbjct: 264 MRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVER 323

Query: 176 -------------------------------KAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
                                          KAKN+D    L   M+G G++PD+  Y  
Sbjct: 324 IKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGT 383

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK--- 261
            I  LC   +++ A+++++EM E+G+  N  I+TTL+D + K+        + E      
Sbjct: 384 FIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELD 443

Query: 262 ----------IVDEMCTN-----------------GLNPDKITYTILLDGFCKEGDLESA 294
                     ++D +C N                 GL  +   YT ++DG CKE  +E+A
Sbjct: 444 IEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAA 503

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
             + ++M ++G+  D  A+T+LI G  + G VV+A  +  +M ++G++
Sbjct: 504 TTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVE 551


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 208/392 (53%), Gaps = 11/392 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           + DA   F  +RKH F         L+  +      +     Y  ++  GYSP V  +N 
Sbjct: 66  IGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNT 125

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+H  CK GK+ +A  +FD   KRG     V++N LING CKA  LDE  R+   M    
Sbjct: 126 LLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSES 185

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PDV TY++L+NGLCK  R+D+A +L+    ++G +PN + ++TLI G C+  R     
Sbjct: 186 LVPDVVTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELR----- 237

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            ++ AR+++++M  NG  PD ++Y  L+ G  +E  +  AL +   ++++G E +   + 
Sbjct: 238 RLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYN 297

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI G  +  +V EA  +   ++K GL+PD  TYT+ ID  CK G  +    +LK+M   
Sbjct: 298 ILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK 357

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G +P V ++NA++NGLCK  ++  A +LL  M   G  P+ I++N L+ G C+ G  +  
Sbjct: 358 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 417

Query: 435 DKLQSE---KGLVSDYACYTSLVSKSSKYRQK 463
                E   +G+      Y  LV    K RQ+
Sbjct: 418 MTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 449



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 176/341 (51%), Gaps = 9/341 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + R    +  L  +  +L  GY P V  +N+L+  L KE ++ +A  +F    K G
Sbjct: 264 LIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHG 323

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   A+++   I+G CKA  +++   +   M+  G  PDV +++A+INGLCKE R+D+AE
Sbjct: 324 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 383

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           +LL  M  +G +PN + F TLI G C+      AG  K+A     EM   G+ P  +TY 
Sbjct: 384 VLLSGMEAKGCSPNAISFNTLICGQCR------AGKWKKAMTTFKEMLKRGVKPTVVTYN 437

Query: 280 ILLDGFCK---EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           IL+DG CK   EG ++ A+ +   MI++G   D V ++ALI G  + GK+ +A R+L  M
Sbjct: 438 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 497

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G  P+  TY  +I   C          L   M   G +P   TY  +++ LCK   +
Sbjct: 498 EAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMV 557

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             A  L D  L+ GVVP    Y  L++G C     ++  KL
Sbjct: 558 DKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKL 598



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 176/338 (52%), Gaps = 13/338 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  FN+ +  LC+  +I DAQ VFD   K G     +++N L++G C    + +   L  
Sbjct: 50  ISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYE 109

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +G  PDV TY+ L++G CK  +LD+A  +     +RG  P+ V +  LI+G CK  
Sbjct: 110 RMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKAD 169

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++D      EA++I+  M +  L PD +TY  L++G CK G ++ A   R  ++ +G   
Sbjct: 170 KLD------EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEA---RMLIVDKGFSP 220

Query: 309 DNVAFTALISGFCRGGKVVEAERMLRE-MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
           + + ++ LISG CR  + +E+ R L E M+  G KPD  +Y  +I    +        +L
Sbjct: 221 NVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKL 280

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              +   G+ P V TYN L++GL K  ++  A  L   ++  G+ PD ITY + ++G CK
Sbjct: 281 FGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCK 340

Query: 428 HGNPED---FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            G  ED     K   EKG V D   + ++++   K ++
Sbjct: 341 AGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 378



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 155/314 (49%), Gaps = 46/314 (14%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           YSP  Y   +L+  L K GKI+ A    ++               L+ G C         
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQL--------------LVKGLC--------- 48

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
                        D+ T++  I+GLC+ +R+ DA+ +   M + G  PN + +  L+ G 
Sbjct: 49  -------------DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGL 95

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C  GR      M +A+ + + M   G +PD +TY  LL GFCK G L+ AL I    +KR
Sbjct: 96  CNGGR------MSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKR 149

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   D V + ALI+GFC+  K+ EA+R+L+ M+   L PD  TY  +++  CKNG     
Sbjct: 150 GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEA 209

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKH-GQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             L+ +    G  P V TY+ L++GLC+   +L++A  LL+ M+  G  PD ++YN L+ 
Sbjct: 210 RMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIH 266

Query: 424 GHCKHGNPEDFDKL 437
           G  +     +  KL
Sbjct: 267 GLAREQGVSEALKL 280



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 167/349 (47%), Gaps = 20/349 (5%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLP-----GLVLDALMIVYVDLGFLDDAIQCFR 83
           L+H +  ++G+  +  LF S+L  R  + P      +++D L+        +++A + F 
Sbjct: 264 LIHGLAREQGVSEALKLFGSVL--RQGYEPEVPTYNILIDGLL----KEDRVNEAFELFS 317

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
            L KH     A      ID + +       L    ++ + G  P V   N +++ LCKE 
Sbjct: 318 GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 377

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++ +A+++      +G    A+SFNTLI G C+A    +       M   G++P V TY+
Sbjct: 378 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 437

Query: 204 ALINGLCK---ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
            L++GLCK   E R+ +A  L   M E+G  P+ V ++ LIDG  K G++D      +AR
Sbjct: 438 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLD------DAR 491

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           +++  M   G  P+  TY  L+ G C    ++ AL++   M+++G   D + +  +IS  
Sbjct: 492 RLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISAL 551

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           C+   V +A  +    L+ G+ P    Y  +ID  C         +LL+
Sbjct: 552 CKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 1/203 (0%)

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           +G +++A + V+++   GL  D  T+ I + G C+   +  A  +   M K G   + + 
Sbjct: 29  SGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRIT 87

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           + AL+SG C GG++ +A+ +   M+K G  PD  TY  ++  FCK G      ++     
Sbjct: 88  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAV 147

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G +P V TYNAL+NG CK  +L  A  +L  M+   +VPD +TYN L+ G CK+G  +
Sbjct: 148 KRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVD 207

Query: 433 DFDKLQSEKGLVSDYACYTSLVS 455
           +   L  +KG   +   Y++L+S
Sbjct: 208 EARMLIVDKGFSPNVITYSTLIS 230


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 245/485 (50%), Gaps = 48/485 (9%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLF--ASILETRGTHLPGLVLD 63
            +  +  ++H L   K +++ R LL    +K    S++++F   S+L + G     +++D
Sbjct: 106 NVEQFCRLLHLLANAKNYNKIRALLDSF-AKNAHYSNSTIFHSLSVLGSWGCA-NSIIVD 163

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-- 121
            L+  YV  G +D A++ F     + FR+ A  C  ++  +++     V    Y E++  
Sbjct: 164 MLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRR 223

Query: 122 ---------------------------------DYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                                             +G+SPSV  +N ++   CK GK+  A
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +  E   + +H   ++FN LI+G C+ +N+    ++   M+  G++P+V TY++LING
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   +LD+A  L  +M   GL PN V +  LI+G CK         +KEAR+++D++  
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM------LKEAREMLDDIGK 397

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL P+ IT+  L+D + K G ++ A  +R  M+  G+  +   +  LI GFCR G V E
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKE 457

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A ++ +EM   GLK D  TY +++D  CK G+T+   RLL EM   G  P+  TYNAL++
Sbjct: 458 ARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALID 517

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVS 445
           G  + G    A  +   M   G   + +TYN+L++G C  G  E+ ++L +   EKGL+ 
Sbjct: 518 GYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIP 577

Query: 446 DYACY 450
           +   Y
Sbjct: 578 NRTTY 582



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 214/417 (51%), Gaps = 22/417 (5%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLR-----KHYFRIPARGCRCLIDRMMR-TNLPT 111
           P L+L        + G + +  Q  RLL      K+Y +I     R L+D   +  +   
Sbjct: 87  PDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKI-----RALLDSFAKNAHYSN 141

Query: 112 VTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            T+   L +L  +G + S+ V ++L+    K G++  A   FD  G  G   +A+S N +
Sbjct: 142 STIFHSLSVLGSWGCANSIIV-DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPM 200

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +    K   +     +   M    +  +V T+  +INGLCK  +   A  ++ +M   G 
Sbjct: 201 LVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGF 260

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
           +P+ + + T+IDG+CK      AG M +A  ++ EM    ++P++IT+ IL+DGFC++ +
Sbjct: 261 SPSVITYNTIIDGYCK------AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           + +A  + +EM ++G++ + V + +LI+G C  GK+ EA  +  +M  +GLKP+  TY  
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNA 374

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ FCK    K    +L ++   G  P V T+N L++   K G++ +A +L   MLD G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           V P+  TYN L+ G C+ GN ++  KL  E    GL +D   Y  LV    K  + R
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR 491



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 6/170 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +LD G  P+V  +N L+   C+EG +K+A+ +  E    GL A  V++N L++  CK   
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGE 489

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             +  RL   M   G+ P   TY+ALI+G  +E     A  +   M ++G   N V +  
Sbjct: 490 TRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNV 549

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           LI G C  G+++      EA ++++EM   GL P++ TY IL D   ++G
Sbjct: 550 LIKGFCNKGKLE------EANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 593



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 17/242 (7%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+ +++     KM  +AR++L  I  K+G+  +   F ++++  G              
Sbjct: 371 TYNALINGFCKKKMLKEAREMLDDI-GKRGLAPNVITFNTLIDAYGKA------------ 417

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G +DDA     ++             CLI    R            E+   G    
Sbjct: 418 ----GRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N+L+  LCK+G+ + A  + DE  + GL+ + +++N LI+G+ +  N      +++
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRT 533

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           +ME  G R ++ TY+ LI G C + +L++A  LL+EM E+GL PN   +  L D   + G
Sbjct: 534 LMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 593

Query: 249 RI 250
            I
Sbjct: 594 FI 595


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 239/495 (48%), Gaps = 53/495 (10%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLH-LIVSKKGMGSSASLFASILETRGTHLPG 59
           P  + TLH     +   VA       +D+ H L +++  +G+ +S+              
Sbjct: 127 PSPKSTLHLLKQTIESRVA-----GVKDVFHELAITRDRLGTKSSI-------------- 167

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
            V D L+    +L   DDA +CF ++++            ++   ++ N        Y E
Sbjct: 168 -VFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +       +VY FN++++ LCKEGK+K A+         G+    V++NT+I+G+C    
Sbjct: 227 MFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           ++    +  +M+  G+ PD YTY +LI+G+CK  +L++A  +L +M E GL P  V + T
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNT 346

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LIDG+C  G +  A                             G M EA  ++ +M  +G
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSG 406

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD ITY IL++G+C+ G+ + A ++  EMI +GI+   V +T+LI    +  ++  A+
Sbjct: 407 IVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAAD 466

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  ++++ G  PD   +  +ID  C NG+    F LLKEM     +P   TYN LM G 
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGR 526

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDY 447
           C+ G+++ A  LL  M   G+ PD I+YN L+ G+ K G+  D   ++ E    G     
Sbjct: 527 CREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTL 586

Query: 448 ACYTSLVSKSSKYRQ 462
             Y +L+    K +Q
Sbjct: 587 LTYNALIQGLCKNQQ 601



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 176/330 (53%), Gaps = 29/330 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y +  L+  +CK GK+++A  + ++  + GL  TAV++NTLI+G+C   +L + 
Sbjct: 301 GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKA 360

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +  M    + P V TY+ LI+ L  E ++D+A+ ++ +M + G+ P+ + +  LI+G
Sbjct: 361 FGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILING 420

Query: 244 HCKNGRIDMAGD-----------------------------MKEARKIVDEMCTNGLNPD 274
           +C+ G    A +                             MK A  + +++   G +PD
Sbjct: 421 YCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPD 480

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            I +  L+DG C  G+L+ A  + KEM KR I  D V +  L+ G CR GKV EA  +L+
Sbjct: 481 LIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLK 540

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM + G++PD  +Y  +I  + K GD    F +  EM S G  P + TYNAL+ GLCK+ 
Sbjct: 541 EMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQ 600

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           Q   A  LL  M+  G+ PDD TY  L+EG
Sbjct: 601 QGDLAEELLKEMVSKGITPDDSTYFSLIEG 630



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 170/354 (48%), Gaps = 29/354 (8%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           +G    A +   I++ RG         +L+      G L++A      +++      A  
Sbjct: 284 RGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVT 343

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              LID            G+  E++     P+V  +N+L+H L  EGK+ +A  +  + G
Sbjct: 344 YNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMG 403

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
             G+   ++++N LING+C+  N  + F L   M   G++P + TY++LI  L K NR+ 
Sbjct: 404 DSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMK 463

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------------------- 253
            A+ L  ++   G +P+ ++F  LIDGHC NG +D A                       
Sbjct: 464 AADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLM 523

Query: 254 ------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                 G ++EAR+++ EM   G+ PD I+Y  L+ G+ K GD+  A  IR EM+  G  
Sbjct: 524 QGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFN 583

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              + + ALI G C+  +   AE +L+EM+  G+ PDD+TY  +I+   K  D+
Sbjct: 584 PTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDS 637



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 3/191 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVL-DALMIVYVDLGFLDDAIQCFRLLRK 87
           L++++  +  M ++  LF  I+    +  P L++ +AL+  +   G LD A    + + K
Sbjct: 452 LIYVLSKRNRMKAADDLFEKIIREGAS--PDLIMFNALIDGHCANGNLDRAFALLKEMDK 509

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
                       L+    R            E+   G  P    +N L+    K G I D
Sbjct: 510 RNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDIND 569

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  + DE    G + T +++N LI G CK +  D    L   M   G+ PD  TY +LI 
Sbjct: 570 AFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIE 629

Query: 208 GLCKENRLDDA 218
           G+ K +   +A
Sbjct: 630 GIGKVDDSSEA 640


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  231 bits (588), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 233/467 (49%), Gaps = 40/467 (8%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           ++ +Y+ +++ LV +   SQA  +    +  K +G    ++   +  +   + G    AL
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVY---MRMKDIGIYPDVYTHTIRMKSFCITGRPTAAL 166

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYL 118
                            RLL      +P +GC         +I    + N        + 
Sbjct: 167 -----------------RLLN----NMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P +  FN L+H LCK+G +++++ +F +  KRG+     +FN  I G C+  
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  RL   +   G+ PDV +Y+ LI G CK ++L +AE  LH+M   G+ PN+  + 
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I+G CK      AG M+ A KI+ +    G  PD+ TY+ L++G C +GD+  A+ + 
Sbjct: 326 TIINGFCK------AGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVF 379

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E +++G +   + +  L+ G  + G V++A +++++M++ G  PD  TY +V++  CK 
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKM 439

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       +L +  + G +P + T+N L++G CK   +  A  +LDTML  G+ PD ITY
Sbjct: 440 GCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 419 NILLEGHCKH---GNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           N LL G CK     N  D  K   EKG   +   Y  L+    K R+
Sbjct: 500 NTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 170/319 (53%), Gaps = 7/319 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + +  L    L    +++++G SP ++ +N++++ LCK G + DA  + ++   +G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 +FNTLI+G+CK +N+D+   +   M   G+ PDV TY+ L+NGLCK  +LD+  
Sbjct: 457 CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVV 516

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
                M E+G TPN + +  LI+  CK+ ++       EA ++  EM T GL PD +T  
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCKDRKVS------EAMELFKEMKTRGLTPDIVTLC 570

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            L+ G C  G+L+ A ++   + K          F  +I+ FC    V  AE++  +M  
Sbjct: 571 TLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGG 630

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
               PD+ TY ++ID +CK G+       L E  S G +P+  T   ++N LC   +L  
Sbjct: 631 SDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSE 690

Query: 399 ANMLLDTMLDLGVVPDDIT 417
           A ++++ M+  G+VP+++ 
Sbjct: 691 AVVIINLMVQNGIVPEEVN 709



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + ++ L++ LC +G +  A  VF E  ++G   + + +NTL+ G  K   + + 
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M   G  PD++TY+ ++NGLCK   L DA  +L++   +G  P+   F TLIDG
Sbjct: 411 LQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDG 470

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK   +D      +A +I+D M ++G+ PD ITY  LL+G CK   L++ +D  K M++
Sbjct: 471 YCKQRNMD------KAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLE 524

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI  FC+  KV EA  + +EM   GL PD  T   +I   C NG+   
Sbjct: 525 KGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDK 584

Query: 364 GFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            + L   +  +     +   +N ++N  C+   +  A  L   M      PD+ TY +++
Sbjct: 585 AYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMI 644

Query: 423 EGHCKHGN 430
           + +CK GN
Sbjct: 645 DSYCKTGN 652



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 163/339 (48%), Gaps = 16/339 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK----RGLHATAVSFNTLINGHCKAKN 179
           G+  ++  +  ++ KL   GK +  + V  E  K    + L    +    ++  + +   
Sbjct: 35  GFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG---IMRDYGRKGK 91

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M+     P V +Y+A++N L +      A  +   M + G+ P+    T 
Sbjct: 92  VQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
            +   C  GR         A ++++ M   G   + ++Y  ++ GF KE     A  +  
Sbjct: 152 RMKSFCITGR------PTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+K+GI  D + F  LI   C+ G V E+E++  +++K G+ P+  T+ + I   C+ G
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                 RLL+ + S+G  P V +YN L+ G CKH +L  A   L  M++ GV P++ TYN
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            ++ G CK G  ++ DK+  +   KG + D   Y+SL++
Sbjct: 326 TIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 32/376 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+  +L  G +P+VY +N+L+  LC  G  K+A  +  +    G     V++NTL+    
Sbjct: 137 FFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 196

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +A  +D   RL  +M   G++P++ T+++++NG+CK  +++DA  +  EM   GL P+ V
Sbjct: 197 RAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGV 256

Query: 236 IFTTLIDGHCKNG-----------------------------RIDMAGDMKEARKIVDEM 266
            + TL+ G+CK G                              +  AG+++ A  +V +M
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQM 316

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL  +++T+T L+DGFCK+G L+ AL   + M +  I+   V + ALI+G+C  G++
Sbjct: 317 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRM 376

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA  +L EM   GLKPD  TY+ +I  +CKN DT + F L ++M   G LP   TY++L
Sbjct: 377 DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 436

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGL 443
           +  LC+  +L +A++L   M+ LG+ PD+ TY  L++GHCK GN E    L     + G+
Sbjct: 437 IRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGV 496

Query: 444 VSDYACYTSLVSKSSK 459
           + D   Y+ L++  SK
Sbjct: 497 LPDVVTYSVLINGLSK 512



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 187/336 (55%), Gaps = 31/336 (9%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +LD G  P++  FN +++ +CK GK++DA+ VFDE  + GL    VS+NTL+ G+CKA  
Sbjct: 211 MLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGC 270

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E   + + M   G+ PDV T+++LI+ +CK   L+ A  L+ +M ERGL  N+V FT 
Sbjct: 271 SHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTA 330

Query: 240 LIDGHCKNGRID-----------------------------MAGDMKEARKIVDEMCTNG 270
           LIDG CK G +D                             M G M EAR+++ EM   G
Sbjct: 331 LIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 390

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L PD +TY+ ++  +CK  D  SA ++ ++M+++G+  D + +++LI   C   ++ +A 
Sbjct: 391 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAH 450

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            + + M+K+GL+PD+ TYT +ID  CK G+ +    L  +M   G LP V TY+ L+NGL
Sbjct: 451 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            K  +   A  LL  +     +P +  Y+ L+  HC
Sbjct: 511 SKSARAMEAQQLLFKLYHEEPIPANTKYDALM--HC 544



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 180/360 (50%), Gaps = 24/360 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+   G  P V  F  L+H +CK G ++ A  +  +  +RGL    V+F  LI+
Sbjct: 274 ALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALID 333

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   LD+       M    ++P V  Y+ALING C   R+D+A  LLHEM  +GL P
Sbjct: 334 GFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 393

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++T+I  +CKN       D   A ++  +M   G+ PD ITY+ L+   C+E  L 
Sbjct: 394 DVVTYSTIISAYCKN------CDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLS 447

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  + K MIK G++ D   +T+LI G C+ G V  A  +  +M+K G+ PD  TY+++I
Sbjct: 448 DAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLI 507

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN---------------GLCKHGQLK 397
           +   K+       +LL ++  +  +PA   Y+ALM+               G C  G + 
Sbjct: 508 NGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMN 567

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
            A+ +  +MLD     D   Y++L+ GHC+ GN      F K   ++G   +     SL+
Sbjct: 568 EADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLI 627



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 192/418 (45%), Gaps = 57/418 (13%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
            L+H++     +  + +L   + E RG  +  +   AL+  +   GFLDDA+   R +R+
Sbjct: 295 SLIHVMCKAGNLEWAVTLVRQMRE-RGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQ 353

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
                    CR                            PSV  +N L++  C  G++ +
Sbjct: 354 ---------CR--------------------------IKPSVVCYNALINGYCMVGRMDE 378

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A+ +  E   +GL    V+++T+I+ +CK  +    F L   M   G+ PD  TYS+LI 
Sbjct: 379 ARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIR 438

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
            LC+E RL DA +L   M + GL P++  +T+LIDGHCK G ++       A  + D+M 
Sbjct: 439 VLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVE------RALSLHDKMV 492

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDI-----RKEMIKRGIELDNV----------A 312
             G+ PD +TY++L++G  K      A  +      +E I    + D +          +
Sbjct: 493 KAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKS 552

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
             AL+ GFC  G + EA+++ + ML      D + Y+++I   C+ G+        K+M 
Sbjct: 553 VLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQML 612

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             G  P   +  +L+ GL ++G +  A+ ++  +L+   + D      L++ +   GN
Sbjct: 613 QRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGN 670



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 137/267 (51%), Gaps = 14/267 (5%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G  P V  Y+A++  L  +  L  A      M   G+ PN   +  LI   C  GR    
Sbjct: 111 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALC--GR---- 163

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G  KEA  I+ +M   G  P+ +TY  L+  F + G+++ A  +   M+  G++ + V F
Sbjct: 164 GHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTF 223

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            ++++G C+ GK+ +A ++  EM++ GL PD  +Y  ++  +CK G +     +  EM  
Sbjct: 224 NSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ 283

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P V T+ +L++ +CK G L+ A  L+  M + G+  +++T+  L++G CK G  + 
Sbjct: 284 KGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD- 342

Query: 434 FDKLQSEKGLVS-----DYACYTSLVS 455
            D L + +G+          CY +L++
Sbjct: 343 -DALLAVRGMRQCRIKPSVVCYNALIN 368


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 233/467 (49%), Gaps = 40/467 (8%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           ++ +Y+ +++ LV +   SQA  +    +  K +G    ++   +  +   + G    AL
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVY---MRMKDIGIYPDVYTHTIRMKSFCITGRPTAAL 166

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYL 118
                            RLL      +P +GC         +I    + N        + 
Sbjct: 167 -----------------RLLN----NMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P +  FN L+H LCK+G +++++ +F +  KRG+     +FN  I G C+  
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  RL   +   G+ PDV +Y+ LI G CK ++L +AE  LH+M   G+ PN+  + 
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I+G CK      AG M+ A KI+ +    G  PD+ TY+ L++G C +GD+  A+ + 
Sbjct: 326 TIINGFCK------AGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVF 379

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E +++G +   + +  L+ G  + G V++A +++++M++ G  PD  TY +V++  CK 
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKM 439

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       +L +  + G +P + T+N L++G CK   +  A  +LDTML  G+ PD ITY
Sbjct: 440 GCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 419 NILLEGHCKH---GNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           N LL G CK     N  D  K   EKG   +   Y  L+    K R+
Sbjct: 500 NTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 170/319 (53%), Gaps = 7/319 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + +  L    L    +++++G SP ++ +N++++ LCK G + DA  + ++   +G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 +FNTLI+G+CK +N+D+   +   M   G+ PDV TY+ L+NGLCK  +LD+  
Sbjct: 457 CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVV 516

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
                M E+G TPN + +  LI+  CK+ ++       EA ++  EM T GL PD +T  
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCKDRKVS------EAMELFKEMKTRGLTPDIVTLC 570

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            L+ G C  G+L+ A ++   + K          F  +I+ FC    V  AE++  +M  
Sbjct: 571 TLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGG 630

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
               PD+ TY ++ID +CK G+       L E  S G +P+  T   ++N LC   +L  
Sbjct: 631 SDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSE 690

Query: 399 ANMLLDTMLDLGVVPDDIT 417
           A ++++ M+  G+VP+++ 
Sbjct: 691 AVVIINLMVQNGIVPEEVN 709



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + ++ L++ LC +G +  A  VF E  ++G   + + +NTL+ G  K   + + 
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M   G  PD++TY+ ++NGLCK   L DA  +L++   +G  P+   F TLIDG
Sbjct: 411 LQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDG 470

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK   +D      +A +I+D M ++G+ PD ITY  LL+G CK   L++ +D  K M++
Sbjct: 471 YCKQRNMD------KAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLE 524

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI  FC+  KV EA  + +EM   GL PD  T   +I   C NG+   
Sbjct: 525 KGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDK 584

Query: 364 GFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            + L   +  +     +   +N ++N  C    +  A  L   M      PD+ TY +++
Sbjct: 585 AYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMI 644

Query: 423 EGHCKHGN 430
           + +CK GN
Sbjct: 645 DSYCKTGN 652



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 163/339 (48%), Gaps = 16/339 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK----RGLHATAVSFNTLINGHCKAKN 179
           G+  ++  +  ++ KL   GK +  + V  E  K    + L    +    ++  + +   
Sbjct: 35  GFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG---IMRDYGRKGK 91

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M+     P V +Y+A++N L +      A  +   M + G+ P+    T 
Sbjct: 92  VQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
            +   C  GR         A ++++ M   G   + ++Y  ++ GF KE     A  +  
Sbjct: 152 RMKSFCITGR------PTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+K+GI  D + F  LI   C+ G V E+E++  +++K G+ P+  T+ + I   C+ G
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                 RLL+ + S+G  P V +YN L+ G CKH +L  A   L  M++ GV P++ TYN
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            ++ G CK G  ++ DK+  +   KG + D   Y+SL++
Sbjct: 326 TIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 235/455 (51%), Gaps = 14/455 (3%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRG--THLPGLVLDA 64
           H  S   H LV  +++  A+ +L HL  S+ G+GS  S+F +++ T       P  V D 
Sbjct: 48  HMLSITTHILVRARLYENAKSILKHL--SQMGVGSK-SVFGALMNTYPLCKSNPS-VFDL 103

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+ VY+  G + DA++ FRL+    F      C  L+ ++++         F+ E+L   
Sbjct: 104 LIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARR 163

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P V  FN+L++ LC EGK+K A  +  +  + G   + V++NT++N +CK        
Sbjct: 164 VCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAAL 223

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M   G+  D  TY+ L++ LCK NR     LLL +M +R ++PN++ + ++I+G 
Sbjct: 224 ELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGF 283

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+I        A +I  EM    L P+ +TY  L+DG C +G+ E AL I + M   
Sbjct: 284 VKEGKIG------AATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEAT 337

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G + + V+++AL++G CR  K   ++ +L  M   G+      YT +ID  C+NG     
Sbjct: 338 GPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNES 397

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +LL +M  DG +P V T++ L+NG C+ G++KN   ++  M   G+ P+ I Y  L+  
Sbjct: 398 VKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYN 457

Query: 425 HCKHGN-PEDFDKLQSEKGLVSDYACYTSLVSKSS 458
           +CK G+  E F    +   +  D  C+   V  SS
Sbjct: 458 YCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSS 492



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 179/361 (49%), Gaps = 45/361 (12%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+   +N +++   KEGKI  A  +F E     L    V++N LI+GHC   N ++   
Sbjct: 270 SPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALT 329

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +ME +G +P+  +YSAL+NGLC+  + + ++ +L  M   G+    + +T +IDG C
Sbjct: 330 ILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLC 389

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG ++      E+ K++D+M  +G+ PD +T+++L++GFC+ G +++  +I  +M K G
Sbjct: 390 RNGLLN------ESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAG 443

Query: 306 IELDNVAFTALI-----------------------------------SGFCRGGKVVEAE 330
           +  +++ +T LI                                   S  C+ GKV  AE
Sbjct: 444 LAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAE 503

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
                M K+G  P+  T+  +I+ +  +G+    F +  EM   GH P+  TY  L+  L
Sbjct: 504 YFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKAL 563

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           C+ G+ K A  LLD +  +    D +TYN +L    K G   D    FD++     L   
Sbjct: 564 CRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDS 623

Query: 447 Y 447
           Y
Sbjct: 624 Y 624



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 171/363 (47%), Gaps = 33/363 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + R  L   ++    ++L  G  P V  F+VL++  C+ GKIK+ + +  +  K G
Sbjct: 384 MIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAG 443

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   ++ + TLI  +CK  ++ E F++   M   G   + +  + L++ LCK+ ++  AE
Sbjct: 444 LAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAE 503

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGR-----------------------------I 250
              H M + G  PN + F  +I+G+  +G                              +
Sbjct: 504 YFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKAL 563

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITY-TILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             AG  KEA++++D++       D +TY TIL++ F K G L  A+ +  EM++R +  D
Sbjct: 564 CRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETF-KSGMLTDAVALFDEMVQRNVLPD 622

Query: 310 NVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +  +  + +G  R GK+V A      +L K  + P+   YT  +D   + G +K      
Sbjct: 623 SYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFC 682

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD-LGVVPDDITYNILLEGHCK 427
           ++M  +G    +   N ++NG  + G++  A  +   M   + + P   TYNILL G+ K
Sbjct: 683 EDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAK 742

Query: 428 HGN 430
             N
Sbjct: 743 KKN 745



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 170/384 (44%), Gaps = 34/384 (8%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE-FGKR 158
             +D + R       L F  ++   G    +   NV+++   + GK+  A  +F   +   
Sbjct: 665  FVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGI 724

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
             +  +  ++N L++G+ K KNL +   L ++M  +G+ PD  T  +LI G CK   LD  
Sbjct: 725  TISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVG 784

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
              LL +M   G+  +   F  LI  +C+   +  A D+                      
Sbjct: 785  LKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISV 844

Query: 257  -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +E+  ++ EM   G  PD+  Y  L++  C+ G +  A  ++ EM   GI   
Sbjct: 845  LSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSG 904

Query: 310  NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            +VA +AL+ G  + GKV EA+ +L  ML+  L P  AT+T ++  FC+N       +L  
Sbjct: 905  DVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKD 964

Query: 370  EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH- 428
             M        V  YN L++GLC  G + +A  L   +   G+ P+  TY IL++    + 
Sbjct: 965  TMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDAIFTND 1024

Query: 429  ---GNPEDFDKLQSEKGLVSDYAC 449
                  E   K   E+G++S + C
Sbjct: 1025 ISLAKGEVLLKDLQERGVISGHWC 1048



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 170/368 (46%), Gaps = 8/368 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYV 131
           G L DA+  F  + +      +     +   ++R       L FY  +L  G  SP   +
Sbjct: 602 GMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVM 661

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM- 190
           +   +  L + G+ K A    ++  K GL A  ++ N ++NG+ +   + +   + ++M 
Sbjct: 662 YTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMW 721

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
            G  + P + TY+ L++G  K+  L     L + M   G+ P+ +   +LI G CK+  +
Sbjct: 722 SGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAML 781

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D+   + +          +G+  D+ T+ +L+  +C+  ++  A D+   M    I  D 
Sbjct: 782 DVGLKLLKKML------LDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDM 835

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
               ++IS   R   V E+  +L EML+ G  PD   Y  +++  C+ G     F+L  E
Sbjct: 836 TTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDE 895

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M + G        +AL+ GL K G+++ A ++LD ML   ++P   T+  L+   C++ +
Sbjct: 896 MEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNES 955

Query: 431 PEDFDKLQ 438
             +  KL+
Sbjct: 956 LVEALKLK 963



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 173/405 (42%), Gaps = 11/405 (2%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++   L+  Y   G + +A + +  + +  +      C  L+  + +     V   F+  
Sbjct: 449 IIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHH 508

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G  P+   F+ +++     G    A  +FDE  K G H +  ++  L+   C+A  
Sbjct: 509 MSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGK 568

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E  RL   +       D  TY+ ++    K   L DA  L  EM +R + P+   +  
Sbjct: 569 FKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAI 628

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIR 298
           +  G  + G+      M  A      +   G ++P+K+ YT  +DG  + G  ++AL   
Sbjct: 629 IFAGLIRRGK------MVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFC 682

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK-VGLKPDDATYTMVIDCFCK 357
           ++M K G+  D +A   +++G+ R GK+ +A  +   M   + + P  ATY +++  + K
Sbjct: 683 EDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAK 742

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
             +      L   M   G  P   T ++L+ G CK   L     LL  ML  GV  D  T
Sbjct: 743 KKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCT 802

Query: 418 YNILLEGHCKH---GNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           +N+L+  +C+    G   D   + +   +  D   + S++S  S+
Sbjct: 803 FNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSR 847



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 168/405 (41%), Gaps = 69/405 (17%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ PS + +  L+  LC+ GK K+A+ + D+          V++NT++    K+ 
Sbjct: 543 EMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSG 602

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIF 237
            L +   L   M    + PD YTY+ +  GL +  ++  A      +  +G ++P  V++
Sbjct: 603 MLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMY 662

Query: 238 TTLID-----------------------------------GHCKNGRIDMAGDM------ 256
           TT +D                                   G+ + G++  AGD+      
Sbjct: 663 TTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWS 722

Query: 257 ----------------KEARKIVDEMCTN--------GLNPDKITYTILLDGFCKEGDLE 292
                             A+K     C+N        G+ PDK+T   L+ GFCK   L+
Sbjct: 723 GITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLD 782

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             L + K+M+  G+ +D   F  LI  +C   +V +A  ++  M    + PD  T+  +I
Sbjct: 783 VGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSII 842

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
               +    +    LL EM   G +P    Y AL+N +C+ G +  A  L D M  LG+ 
Sbjct: 843 SVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGIS 902

Query: 413 PDDITYNILLEGHCKHGNPEDFD---KLQSEKGLVSDYACYTSLV 454
             D+  + L+ G  K G  E+          K L+   A +T+L+
Sbjct: 903 SGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLM 947


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/426 (32%), Positives = 224/426 (52%), Gaps = 13/426 (3%)

Query: 8    HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRG--THLPGLVLDA 64
            H Y    H LV  +M+  A+ +L HL   + G+GS  S+F ++++T      +P  V D 
Sbjct: 864  HMYCLTAHILVKARMYDSAKSILRHL--CQMGIGSK-SIFGALMDTYPLCNSIPS-VFDL 919

Query: 65   LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
            L+ VY+  G +D A++ F L+    F+     C  ++  M++     +    + E+ D G
Sbjct: 920  LIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKG 979

Query: 125  YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
              P+V  FN+L++ LC EG +K A  +  +  + G   T V++NTL+N +CK        
Sbjct: 980  ICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAI 1039

Query: 185  RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
             L   M   G+  DV TY+  I+ LC  +R   A LLL +M +  ++PN+V + TLI+G 
Sbjct: 1040 ELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGF 1099

Query: 245  CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
             K G+I +A       ++ +EM    L+P+ +TY  L+ G C  GD E AL +   M   
Sbjct: 1100 VKEGKIGVAA------QVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 1153

Query: 305  GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            G+ L+ V +  L++G C+  K   A+R+L  M    +      YT++ID  CKNG     
Sbjct: 1154 GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEA 1213

Query: 365  FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +L+  M  DG  P V TY++L+NG C+ G +K+A  ++  M   G+V + I Y+ L+  
Sbjct: 1214 VQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYN 1273

Query: 425  HCKHGN 430
             C+HGN
Sbjct: 1274 FCQHGN 1279



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 46/369 (12%)

Query: 126  SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            SP+   +N L++   KEGKI  A  VF+E  K  L    V++N LI GHC   + +E  R
Sbjct: 1086 SPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALR 1145

Query: 186  LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            L   ME +G+R +  TY  L+NGLCK  + + A+ LL  M    +    + +T LIDG C
Sbjct: 1146 LLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLC 1205

Query: 246  KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            KNG +D      EA ++V  M  +G+NPD ITY+ L++GFC+ G+++SA +I   M + G
Sbjct: 1206 KNGMLD------EAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 1259

Query: 306  IELDNVAFTALISGFC-----------------------------------RGGKVVEAE 330
            + L+ + ++ LI  FC                                   R GK+ EAE
Sbjct: 1260 LVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAE 1319

Query: 331  RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            + L  M ++GL P+  TY  +I+ +   GD    F    +M   G  P+  TY +L+ GL
Sbjct: 1320 KFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGL 1379

Query: 391  CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
            CK G L  A   L+ +  +    D + YN LL   CK GN  +    FDK+     L   
Sbjct: 1380 CKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDS 1439

Query: 447  YACYTSLVS 455
            Y  Y+SL++
Sbjct: 1440 YT-YSSLLT 1447



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 171/364 (46%), Gaps = 33/364 (9%)

Query: 132  FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            +  L++ LCK  K + A+ + +      +    +++  LI+G CK   LDE  +L   M 
Sbjct: 1162 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 1221

Query: 192  GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
              G+ PDV TYS+LING C+   +  A+ ++  M   GL  N +I++TLI   C++G + 
Sbjct: 1222 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 1281

Query: 252  MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
             A                             G + EA K +  M   GL P+ ITY  ++
Sbjct: 1282 EAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCII 1341

Query: 283  DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            +G+   GD  +A     +MIK G       + +L+ G C+GG +VEA++ L  +  +   
Sbjct: 1342 NGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGA 1401

Query: 343  PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
             D   Y  ++   CK+G+      L  +M  +  LP   TY++L+ GLC+ G+   A  L
Sbjct: 1402 VDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCL 1461

Query: 403  LDTMLDLGVV-PDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSS 458
              T +  G + P+ + Y  L++G  K G+P+    F +   +KG   D   + +++   S
Sbjct: 1462 FGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCS 1521

Query: 459  KYRQ 462
            +  Q
Sbjct: 1522 RRGQ 1525



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 171/372 (45%), Gaps = 30/372 (8%)

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            C+I+       P     F+ +++  G  PS + +  L+  LCK G + +A+   +     
Sbjct: 1339 CIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYI 1398

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                 +V +NTL+   CK+ NL E   L   M  + + PD YTYS+L+ GLC++ +   A
Sbjct: 1399 PGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTA 1458

Query: 219  ELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMA------------------------ 253
              L      RG L PN V++T L+DG  K G    A                        
Sbjct: 1459 VCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIID 1518

Query: 254  -----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                 G M +A      M   G+ P+  TY ILL GF K+  L   L +   M++ GI  
Sbjct: 1519 SCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFP 1578

Query: 309  DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
            D + F +LI G  + G      ++L +M+  G   D  T+ ++I+ + ++G  +  F L+
Sbjct: 1579 DKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLV 1638

Query: 369  KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
              M + G  P  +TYN + NGL K    + + ++L  ML+ GV+P    Y  L+ G C+ 
Sbjct: 1639 NFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRV 1698

Query: 429  GNPEDFDKLQSE 440
            G+ +   KL+ E
Sbjct: 1699 GDIQGAFKLKDE 1710



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 166/379 (43%), Gaps = 32/379 (8%)

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            CL+D + +   P     F+ E++  G  P    FN ++    + G++  A   F      
Sbjct: 1480 CLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWW 1539

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            G+     ++N L++G  K + L     L S M   G+ PD  T+ +LI GL K    D  
Sbjct: 1540 GVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLG 1599

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
              LL +M   G   +   F  LI+ + ++G++  A D+                      
Sbjct: 1600 VKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNG 1659

Query: 257  -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +E+  ++ EM  NG+ P    Y  L++G C+ GD++ A  ++ EM   G    
Sbjct: 1660 LNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSH 1719

Query: 310  NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             VA +A++ G    GK  +A  +L  ML++ L P  AT+T ++  FC++       +L  
Sbjct: 1720 EVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKG 1779

Query: 370  EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             M   G    V  YN L+ G+C +G    A  L + M    + P+  TY +L++      
Sbjct: 1780 VMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAAN 1839

Query: 430  NPEDFDKLQS---EKGLVS 445
            N    +KL +   E+GL+S
Sbjct: 1840 NLIQGEKLLTDLQERGLIS 1858



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 47/295 (15%)

Query: 186  LKSVMEGSGMRPD--VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV-------- 235
            LK V++  G+      + Y    + L K    D A+ +L  +C+ G+    +        
Sbjct: 848  LKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTY 907

Query: 236  --------IFTTLIDGHCKNGRID------------------------MAGDMKEAR--- 260
                    +F  LI  + K G ID                        +A  +K+ R   
Sbjct: 908  PLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTEL 967

Query: 261  --KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
               +  EM   G+ P+  T+ IL++G C EG+L+ A ++ K+M + G     V +  L++
Sbjct: 968  VWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLN 1027

Query: 319  GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
             +C+ G+   A  ++  M+  G++ D  TY + ID  C N  +   + LLK+MR +   P
Sbjct: 1028 WYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISP 1087

Query: 379  AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               TYN L+NG  K G++  A  + + M    + P+ +TYN L+ GHC  G+ E+
Sbjct: 1088 NEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEE 1142


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/426 (32%), Positives = 224/426 (52%), Gaps = 13/426 (3%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRG--THLPGLVLDA 64
           H Y    H LV  +M+  A+ +L HL   + G+GS  S+F ++++T      +P  V D 
Sbjct: 113 HMYCLTAHILVKARMYDSAKSILRHL--CQMGIGSK-SIFGALMDTYPLCNSIPS-VFDL 168

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+ VY+  G +D A++ F L+    F+     C  ++  M++     +    + E+ D G
Sbjct: 169 LIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKG 228

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+V  FN+L++ LC EG +K A  +  +  + G   T V++NTL+N +CK        
Sbjct: 229 ICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAI 288

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M   G+  DV TY+  I+ LC  +R   A LLL +M +  ++PN+V + TLI+G 
Sbjct: 289 ELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGF 348

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+I +A       ++ +EM    L+P+ +TY  L+ G C  GD E AL +   M   
Sbjct: 349 VKEGKIGVAA------QVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 402

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+ L+ V +  L++G C+  K   A+R+L  M    +      YT++ID  CKNG     
Sbjct: 403 GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEA 462

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +L+  M  DG  P V TY++L+NG C+ G +K+A  ++  M   G+V + I Y+ L+  
Sbjct: 463 VQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYN 522

Query: 425 HCKHGN 430
            C+HGN
Sbjct: 523 FCQHGN 528



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 46/369 (12%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+   +N L++   KEGKI  A  VF+E  K  L    V++N LI GHC   + +E  R
Sbjct: 335 SPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALR 394

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   ME +G+R +  TY  L+NGLCK  + + A+ LL  M    +    + +T LIDG C
Sbjct: 395 LLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLC 454

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           KNG +D      EA ++V  M  +G+NPD ITY+ L++GFC+ G+++SA +I   M + G
Sbjct: 455 KNGMLD------EAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 508

Query: 306 IELDNVAFTALISGFC-----------------------------------RGGKVVEAE 330
           + L+ + ++ LI  FC                                   R GK+ EAE
Sbjct: 509 LVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAE 568

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           + L  M ++GL P+  TY  +I+ +   GD    F    +M   G  P+  TY +L+ GL
Sbjct: 569 KFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGL 628

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           CK G L  A   L+ +  +    D + YN LL   CK GN  +    FDK+     L   
Sbjct: 629 CKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDS 688

Query: 447 YACYTSLVS 455
           Y  Y+SL++
Sbjct: 689 YT-YSSLLT 696



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 171/372 (45%), Gaps = 30/372 (8%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+I+       P     F+ +++  G  PS + +  L+  LCK G + +A+   +     
Sbjct: 588 CIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYI 647

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                +V +NTL+   CK+ NL E   L   M  + + PD YTYS+L+ GLC++ +   A
Sbjct: 648 PGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTA 707

Query: 219 ELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMA------------------------ 253
             L      RG L PN V++T L+DG  K G    A                        
Sbjct: 708 VCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIID 767

Query: 254 -----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                G M +A      M   G+ P+  TY ILL GF K+  L   L +   M++ GI  
Sbjct: 768 SCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFP 827

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D + F +LI G  + G      ++L +M+  G   D  T+ ++I+ + ++G  +  F L+
Sbjct: 828 DKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLV 887

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M + G  P  +TYN + NGL K    + + ++L  ML+ GV+P    Y  L+ G C+ 
Sbjct: 888 NFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRV 947

Query: 429 GNPEDFDKLQSE 440
           G+ +   KL+ E
Sbjct: 948 GDIQGAFKLKDE 959



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 171/364 (46%), Gaps = 33/364 (9%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L++ LCK  K + A+ + +      +    +++  LI+G CK   LDE  +L   M 
Sbjct: 411 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 470

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ PDV TYS+LING C+   +  A+ ++  M   GL  N +I++TLI   C++G + 
Sbjct: 471 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 530

Query: 252 MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
            A                             G + EA K +  M   GL P+ ITY  ++
Sbjct: 531 EAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCII 590

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G+   GD  +A     +MIK G       + +L+ G C+GG +VEA++ L  +  +   
Sbjct: 591 NGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGA 650

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            D   Y  ++   CK+G+      L  +M  +  LP   TY++L+ GLC+ G+   A  L
Sbjct: 651 VDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCL 710

Query: 403 LDTMLDLGVV-PDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSS 458
             T +  G + P+ + Y  L++G  K G+P+    F +   +KG   D   + +++   S
Sbjct: 711 FGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCS 770

Query: 459 KYRQ 462
           +  Q
Sbjct: 771 RRGQ 774



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 166/379 (43%), Gaps = 32/379 (8%)

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            CL+D + +   P     F+ E++  G  P    FN ++    + G++  A   F      
Sbjct: 729  CLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWW 788

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            G+     ++N L++G  K + L     L S M   G+ PD  T+ +LI GL K    D  
Sbjct: 789  GVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLG 848

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
              LL +M   G   +   F  LI+ + ++G++  A D+                      
Sbjct: 849  VKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNG 908

Query: 257  -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +E+  ++ EM  NG+ P    Y  L++G C+ GD++ A  ++ EM   G    
Sbjct: 909  LNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSH 968

Query: 310  NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             VA +A++ G    GK  +A  +L  ML++ L P  AT+T ++  FC++       +L  
Sbjct: 969  EVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKG 1028

Query: 370  EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             M   G    V  YN L+ G+C +G    A  L + M    + P+  TY +L++      
Sbjct: 1029 VMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAAN 1088

Query: 430  NPEDFDKLQS---EKGLVS 445
            N    +KL +   E+GL+S
Sbjct: 1089 NLIQGEKLLTDLQERGLIS 1107



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 144/327 (44%), Gaps = 50/327 (15%)

Query: 186 LKSVMEGSGMRPD--VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV-------- 235
           LK V++  G+      + Y    + L K    D A+ +L  +C+ G+    +        
Sbjct: 97  LKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTY 156

Query: 236 --------IFTTLIDGHCKNGRIDMAGDMKEARKIVD----------------------- 264
                   +F  LI  + K G ID A +  E   +V                        
Sbjct: 157 PLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTEL 216

Query: 265 ------EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
                 EM   G+ P+  T+ IL++G C EG+L+ A ++ K+M + G     V +  L++
Sbjct: 217 VWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLN 276

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            +C+ G+   A  ++  M+  G++ D  TY + ID  C N  +   + LLK+MR +   P
Sbjct: 277 WYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISP 336

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL- 437
              TYN L+NG  K G++  A  + + M    + P+ +TYN L+ GHC  G+ E+  +L 
Sbjct: 337 NEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLL 396

Query: 438 --QSEKGLVSDYACYTSLVSKSSKYRQ 462
                 GL  +   Y +L++   K+ +
Sbjct: 397 DHMEAAGLRLNEVTYGTLLNGLCKHEK 423


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 222/433 (51%), Gaps = 31/433 (7%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPG---LVLDALMIVYVDLGFLDDAIQCFRLL 85
           ++HL V+ K +  + SL +S  E    ++        D L+  Y D G        F  +
Sbjct: 548 VIHLAVASKDLKVAQSLISSFWERPKLNVTESFVQFFDLLVYTYKDWGSDPRVFDVFFQV 607

Query: 86  RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE-GK 144
              +  +P    R + ++M                L+YG   SV   NV + +L K+  K
Sbjct: 608 LVEFGMLPE--ARKVFEKM----------------LNYGLVLSVDSCNVYLARLSKDCNK 649

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
              A +VF EF + G+     S+N +I+  C+   ++E   L  +ME  G  PDV +YS 
Sbjct: 650 TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYST 709

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           +ING C+   LD    L+ +M ++GL PN   + ++I   C+  +      + EA +   
Sbjct: 710 VINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICK------LAEAEEAFS 763

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   G+ PD I YT L+DGFCK GD+ +A     EM  R I  D + +TA+ISGFC+ G
Sbjct: 764 EMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 823

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            +VEA ++  EML  GL+PD  T+T +++ +CK G  K  FR+   M   G  P V TY 
Sbjct: 824 DMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYT 883

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
            L++GLCK G L +AN LL  M  +G+ P+  TYN ++ G CK GN E+  KL  E    
Sbjct: 884 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 943

Query: 442 GLVSDYACYTSLV 454
           GL +D   YT+L+
Sbjct: 944 GLNADTVTYTTLM 956



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 184/354 (51%), Gaps = 12/354 (3%)

Query: 117  YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
            + E++  G  P   V+  L+   CK G I+ A   F E   R +    +++  +I+G C+
Sbjct: 762  FSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 821

Query: 177  AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              ++ E  +L   M   G+ PD+ T++ L+NG CK   + DA  + + M + G +PN V 
Sbjct: 822  IGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVT 881

Query: 237  FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            +TTLIDG CK G      D+  A +++ EM   GL P+  TY  +++G CK G++E A+ 
Sbjct: 882  YTTLIDGLCKEG------DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 935

Query: 297  IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
            +  E    G+  D V +T L+  +C+ G++ +A+ +L EML  GL+P   T+ ++++ FC
Sbjct: 936  LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFC 995

Query: 357  KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             +G  + G +LL  M + G  P   T+N L+   C    LK A  +   M   GV PD  
Sbjct: 996  LHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGK 1055

Query: 417  TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS---KSSKYRQKR 464
            TY  L++GHC   N ++   L  E   KG     + Y+ L+    K  K+ + R
Sbjct: 1056 TYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAR 1109



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 170/346 (49%), Gaps = 29/346 (8%)

Query: 116  FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            F+ E+     +P V  +  ++   C+ G + +A  +F E   RGL    ++F  L+NG+C
Sbjct: 796  FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYC 855

Query: 176  KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            KA ++ + FR+ + M  +G  P+V TY+ LI+GLCKE  LD A  LLHEM + GL PN  
Sbjct: 856  KAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 915

Query: 236  IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
             + ++++G CK+G I+ A                             G+M +A++I+ EM
Sbjct: 916  TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEM 975

Query: 267  CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
               GL P  +T+ +L++GFC  G LE    +   M+ +GI  +   F  L+  +C    +
Sbjct: 976  LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNL 1035

Query: 327  VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
              A  + ++M   G++PD  TY  ++   C   + K  + L +EM+  G   +V TY+ L
Sbjct: 1036 KAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVL 1095

Query: 387  MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            + G  K  +   A  + D M   G+  D   ++   +   K   P+
Sbjct: 1096 IKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPD 1141



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 64/249 (25%)

Query: 119  EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            E+   G  P+++ +N +++ LCK G I++A  +  EF   GL+A  V++ TL++ +CK+ 
Sbjct: 904  EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 963

Query: 179  NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH--------------- 223
             +D+   + + M G G++P + T++ L+NG C    L+D E LL+               
Sbjct: 964  EMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1023

Query: 224  --------------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAG----DMK-- 257
                                +MC RG+ P+   +  L+ GHC    +  A     +MK  
Sbjct: 1024 CLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGK 1083

Query: 258  -----------------------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                                   EAR+I D+M  +GL  DK  +    D   K    ++ 
Sbjct: 1084 GFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTI 1143

Query: 295  LDIRKEMIK 303
            +D   E+I+
Sbjct: 1144 VDPIDEIIE 1152



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 6/152 (3%)

Query: 120  ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
            +L  G +P+   FN L+ + C    +K A  ++ +   RG+     ++  L+ GHC A+N
Sbjct: 1010 MLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARN 1069

Query: 180  LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            + E + L   M+G G    V TYS LI G  K  +  +A  +  +M   GL  +  IF  
Sbjct: 1070 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDF 1129

Query: 240  LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
              D   K  R D   D       +DE+  N L
Sbjct: 1130 FSDTKYKGKRPDTIVDP------IDEIIENYL 1155



 Score = 38.9 bits (89), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 2/180 (1%)

Query: 53   RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM-MRTNLPT 111
            +G     +  + LM  +   G L+D  +    +        A    CL+ +  +R NL  
Sbjct: 978  KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKA 1037

Query: 112  VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             T   Y ++   G  P    +  L+   C    +K+A  +F E   +G   +  +++ LI
Sbjct: 1038 AT-AIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLI 1096

Query: 172  NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             G  K K   E   +   M   G+  D   +    +   K  R D     + E+ E  L 
Sbjct: 1097 KGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIENYLV 1156


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 189/338 (55%), Gaps = 41/338 (12%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ + +L+ +LC+EGKI++A  VF +  K GL    ++FN LING+CK   +   F+L
Sbjct: 333 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 392

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            SVME    +P++ TY+ L+ GLC+ ++   A LLL  + + GL P+ V +  L+DG CK
Sbjct: 393 LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCK 452

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+++MA +      I + M + GL PD  T+T L+DG CK G LE A  I   M+K+GI
Sbjct: 453 EGQLNMAFN------IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 506

Query: 307 ELDNVAFTALISGFCRGG-----------------------------------KVVEAER 331
            LD V FTALI G C+ G                                   K+ EA  
Sbjct: 507 SLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANA 566

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           ML +M+K GL P   T+T++I+  C+ G+T    ++L+ M+  G  P V TY  ++NGLC
Sbjct: 567 MLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC 626

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +G+++ A  +L +M   GV P+  TY +L++ H K G
Sbjct: 627 NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 664



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 220/458 (48%), Gaps = 49/458 (10%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           FRL+   YST++                 + ++K  MG  A L    +   G  L G+  
Sbjct: 155 FRLSYPCYSTLL-----------------MCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 197

Query: 63  DALMIVYVDLGFLDDA-IQCFRLLRKHYFRIPARGCRCLI-DRMMRTNLPTVTLGFYLEI 120
             ++      GF+  A + C ++LR   F +    C  L+     R +L      F    
Sbjct: 198 RTVVNALCKNGFVQAAEMFCCKVLRLG-FGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 256

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
            +    P+   +++L+H LC+ G++++A  +  E  ++G   +  ++  LI   C     
Sbjct: 257 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 316

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+  ++   M      P+V+TY+ LI+ LC+E ++++A  +  +M + GL P  + F  L
Sbjct: 317 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 376

Query: 241 IDGHCKNGRIDMA-------------GDMKEARKIVDEMCT----------------NGL 271
           I+G+CK G +  A              +++   ++++ +C                 NGL
Sbjct: 377 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 436

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD++TY IL+DGFCKEG L  A +I   M   G+E D   FTALI G C+ G++ +A  
Sbjct: 437 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 496

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L  M+K G+  D+ T+T +ID  CK G  K    L + M  +  L    T+N  ++ L 
Sbjct: 497 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 556

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           K  +L  AN +L  M+  G+VP  +T+ IL+EGHC+ G
Sbjct: 557 KDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 594



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 201/400 (50%), Gaps = 15/400 (3%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           +++GF+  A   +R +    F +     R +++ + +         F  ++L  G+    
Sbjct: 172 LNMGFV--AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDT 229

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +V   L+   C+   + +A  VF++  K       +V+++ LI+G C+A  L+E F+LK 
Sbjct: 230 HVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQ 289

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G +P   TY+ LI   C     D A  +L EM  +   PN   +T LID  C+ G
Sbjct: 290 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 349

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +I+      EA  +  +M  +GL P  IT+  L++G+CKEG + SA  +   M K   + 
Sbjct: 350 KIE------EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKP 403

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   +  L+ G CR  K  +A  +LR ++  GL PD  TY +++D FCK G     F + 
Sbjct: 404 NIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIF 463

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M S G  P   T+ AL++GLCK G+L+ AN +L +M+  G+  D++T+  L++GHCK 
Sbjct: 464 NSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKI 523

Query: 429 GNPED----FDKLQSEKGLVS--DYACYTSLVSKSSKYRQ 462
           G  +D    F+ +   + L +   + C+   + K  K  +
Sbjct: 524 GKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNE 563



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 199/476 (41%), Gaps = 121/476 (25%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-- 157
           LIDR+ R        G + ++L +G  P +  FN L++  CKEG +  A  +     K  
Sbjct: 341 LIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN 400

Query: 158 ---------------------------------RGLHATAVSFNTLINGHCKAKNLDEGF 184
                                             GL    V++N L++G CK   L+  F
Sbjct: 401 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 460

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            + + M  +G+ PD +T++ALI+GLCK  RL+ A  +L  M ++G++ ++V FT LIDGH
Sbjct: 461 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 520

Query: 245 CKNGR--------------------------IDMAGD---MKEARKIVDEMCTNGLNPDK 275
           CK G+                          +D  G    + EA  ++ +M   GL P  
Sbjct: 521 CKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSV 580

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +T+TIL++G C+ G+   +L + + M + G   +   +T +I+G C  G+V EAE +L  
Sbjct: 581 VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFS 640

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL--------------------------- 368
           M   G+ P+  TY +++    K G     F+++                           
Sbjct: 641 MSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNT 700

Query: 369 ----KEMRSDGHL------------------------PAVETYNALMNGLCKHGQLKNAN 400
               + + S G L                        P  + YN L+ GLCK G++  A+
Sbjct: 701 AIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEAD 760

Query: 401 MLLDTMLDLGVVPDDITYNILLE--GHCKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
            L   M+  G+ PD    +I+      CK+ N  +F KL  +   V  +A Y  ++
Sbjct: 761 QLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVI 816



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 155/301 (51%), Gaps = 29/301 (9%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           + + FN  +  L K+ K+ +A  +  +  K GL  + V+   LI GHC+A       ++ 
Sbjct: 544 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML 603

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+ +G  P+VYTY+ +INGLC   R+++AE +L  M   G++PN   +  L+  H K 
Sbjct: 604 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKA 663

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC------------KEGDLES-A 294
           GR+D       A +IV  M  NG  P+   Y+ LL GF               GDL++ +
Sbjct: 664 GRLD------RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS 717

Query: 295 LD--------IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           L         +  E+ K G+  +++ +  L+ G C+ G+++EA+++ ++M+K GL PD A
Sbjct: 718 LSSEENDNNCLSNEIKKCGVPTEDL-YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKA 776

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             + +I+ +CK          +K +  +  +P+  +Y  +++GL   G+++ A  L+  +
Sbjct: 777 ISS-IIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 835

Query: 407 L 407
           +
Sbjct: 836 V 836



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 70/330 (21%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G R     YS L+  L K N    A L+   M   G     + + T+++  CKNG +  A
Sbjct: 154 GFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAA 213

Query: 254 -----------------------------GDMKEARKIVDEMCT-NGLNPDKITYTILLD 283
                                         D+ EA ++ ++M       P+ +TY+IL+ 
Sbjct: 214 EMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIH 273

Query: 284 GFCKEGDLESALDIRKEMIKRGIE-------------------------LDNVA------ 312
           G C+ G LE A  +++EM+++G +                         LD +A      
Sbjct: 274 GLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVP 333

Query: 313 ----FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               +T LI   CR GK+ EA  + R+MLK GL P   T+  +I+ +CK G   + F+LL
Sbjct: 334 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL 393

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M      P + TYN LM GLC+  +   A +LL  ++D G++PD +TYNIL++G CK 
Sbjct: 394 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 453

Query: 429 GNP----EDFDKLQSEKGLVSDYACYTSLV 454
           G        F+ + S  GL  D   +T+L+
Sbjct: 454 GQLNMAFNIFNSMNS-AGLEPDGFTFTALI 482



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 124/260 (47%), Gaps = 29/260 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R     ++L     +   G SP+VY + ++++ LC  G++++A+ +       G
Sbjct: 586 LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFG 645

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL---- 215
           +     ++  L+  H KA  LD  F++ S M  +G +P+ + YSAL++G    N      
Sbjct: 646 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGAR 705

Query: 216 -----------------DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
                            +D   L +E+ + G+ P + ++  L+ G CK GRI       E
Sbjct: 706 ALSSTGDLDARSLSSEENDNNCLSNEIKKCGV-PTEDLYNFLVVGLCKEGRI------IE 758

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A ++  +M  +GL PDK   +I+ + +CK    ++ L+  K ++         ++  +I 
Sbjct: 759 ADQLTQDMVKHGLFPDKAISSII-EHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIH 817

Query: 319 GFCRGGKVVEAERMLREMLK 338
           G    G+V EA++++ ++++
Sbjct: 818 GLRNEGRVQEAQKLVSDLVR 837



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+  ++N L+  LCKEG+I +A  +  +  K GL     + +++I  +CK    D     
Sbjct: 738 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEF 796

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             ++  +   P   +Y  +I+GL  E R+ +A+ L+ ++        +V  T  I+
Sbjct: 797 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIE 852



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 39/168 (23%)

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           VV+    L  M ++G +     Y+ ++ C  K       F + + M ++G +     Y  
Sbjct: 140 VVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRT 199

Query: 386 LMNGLCKHGQLKNANML----------LDTML------------DLGVV----------- 412
           ++N LCK+G ++ A M           LDT +            DLG             
Sbjct: 200 VVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEE 259

Query: 413 ---PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
              P+ +TY+IL+ G C+ G  E+  +L+    EKG       YT L+
Sbjct: 260 NCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLI 307


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 189/338 (55%), Gaps = 41/338 (12%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ + +L+ +LC+EGKI++A  VF +  K GL    ++FN LING+CK   +   F+L
Sbjct: 267 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 326

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            SVME    +P++ TY+ L+ GLC+ ++   A LLL  + + GL P+ V +  L+DG CK
Sbjct: 327 LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCK 386

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+++MA +      I + M + GL PD  T+T L+DG CK G LE A  I   M+K+GI
Sbjct: 387 EGQLNMAFN------IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 440

Query: 307 ELDNVAFTALISGFCRGG-----------------------------------KVVEAER 331
            LD V FTALI G C+ G                                   K+ EA  
Sbjct: 441 SLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANA 500

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           ML +M+K GL P   T+T++I+  C+ G+T    ++L+ M+  G  P V TY  ++NGLC
Sbjct: 501 MLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC 560

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +G+++ A  +L +M   GV P+  TY +L++ H K G
Sbjct: 561 NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 598



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 220/458 (48%), Gaps = 49/458 (10%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           FRL+   YST++                 + ++K  MG  A L    +   G  L G+  
Sbjct: 89  FRLSYPCYSTLL-----------------MCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 131

Query: 63  DALMIVYVDLGFLDDA-IQCFRLLRKHYFRIPARGCRCLI-DRMMRTNLPTVTLGFYLEI 120
             ++      GF+  A + C ++LR   F +    C  L+     R +L      F    
Sbjct: 132 RTVVNALCKNGFVQAAEMFCCKVLRLG-FGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 190

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
            +    P+   +++L+H LC+ G++++A  +  E  ++G   +  ++  LI   C     
Sbjct: 191 KEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 250

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+  ++   M      P+V+TY+ LI+ LC+E ++++A  +  +M + GL P  + F  L
Sbjct: 251 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 310

Query: 241 IDGHCKNGRIDMA-------------GDMKEARKIVDEMCT----------------NGL 271
           I+G+CK G +  A              +++   ++++ +C                 NGL
Sbjct: 311 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 370

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD++TY IL+DGFCKEG L  A +I   M   G+E D   FTALI G C+ G++ +A  
Sbjct: 371 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 430

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L  M+K G+  D+ T+T +ID  CK G  K    L + M  +  L    T+N  ++ L 
Sbjct: 431 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 490

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           K  +L  AN +L  M+  G+VP  +T+ IL+EGHC+ G
Sbjct: 491 KDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 528



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 201/400 (50%), Gaps = 15/400 (3%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           +++GF+  A   +R +    F +     R +++ + +         F  ++L  G+    
Sbjct: 106 LNMGFV--AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDT 163

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +V   L+   C+   + +A  VF++  K       +V+++ LI+G C+A  L+E F+LK 
Sbjct: 164 HVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQ 223

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G +P   TY+ LI   C     D A  +L EM  +   PN   +T LID  C+ G
Sbjct: 224 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 283

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +I+      EA  +  +M  +GL P  IT+  L++G+CKEG + SA  +   M K   + 
Sbjct: 284 KIE------EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKP 337

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   +  L+ G CR  K  +A  +LR ++  GL PD  TY +++D FCK G     F + 
Sbjct: 338 NIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIF 397

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M S G  P   T+ AL++GLCK G+L+ AN +L +M+  G+  D++T+  L++GHCK 
Sbjct: 398 NSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKI 457

Query: 429 GNPED----FDKLQSEKGLVS--DYACYTSLVSKSSKYRQ 462
           G  +D    F+ +   + L +   + C+   + K  K  +
Sbjct: 458 GKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNE 497



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 156/317 (49%), Gaps = 45/317 (14%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           + + FN  +  L K+ K+ +A  +  +  K GL  + V+   LI GHC+A       ++ 
Sbjct: 478 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML 537

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+ +G  P+VYTY+ +INGLC   R+++AE +L  M   G++PN   +  L+  H K 
Sbjct: 538 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKA 597

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC------------KEGDLES-- 293
           GR+D       A +IV  M  NG  P+   Y+ LL GF               GDL++  
Sbjct: 598 GRLD------RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS 651

Query: 294 -----------------------ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                                  AL IR E+ K G+  +++ +  L+ G C+ G+++EA+
Sbjct: 652 LSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDL-YNFLVVGLCKEGRIIEAD 710

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++ ++M+K GL PD A  + +I+ +CK          +K +  +  +P+  +Y  +++GL
Sbjct: 711 QLTQDMVKHGLFPDKAISS-IIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGL 769

Query: 391 CKHGQLKNANMLLDTML 407
              G+++ A  L+  ++
Sbjct: 770 RNEGRVQEAQKLVSDLV 786



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 70/330 (21%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G R     YS L+  L K N    A L+   M   G     + + T+++  CKNG +  A
Sbjct: 88  GFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAA 147

Query: 254 -----------------------------GDMKEARKIVDEMCT-NGLNPDKITYTILLD 283
                                         D+ EA ++ ++M       P+ +TY+IL+ 
Sbjct: 148 EMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIH 207

Query: 284 GFCKEGDLESALDIRKEMIKRGIE-------------------------LDNVA------ 312
           G C+ G LE A  +++EM+++G +                         LD +A      
Sbjct: 208 GLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVP 267

Query: 313 ----FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               +T LI   CR GK+ EA  + R+MLK GL P   T+  +I+ +CK G   + F+LL
Sbjct: 268 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL 327

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M      P + TYN LM GLC+  +   A +LL  ++D G++PD +TYNIL++G CK 
Sbjct: 328 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 387

Query: 429 GNP----EDFDKLQSEKGLVSDYACYTSLV 454
           G        F+ + S  GL  D   +T+L+
Sbjct: 388 GQLNMAFNIFNSMNS-AGLEPDGFTFTALI 416



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 124/275 (45%), Gaps = 43/275 (15%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R     ++L     +   G SP+VY + ++++ LC  G++++A+ +       G
Sbjct: 520 LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFG 579

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN------ 213
           +     ++  L+  H KA  LD  F++ S M  +G +P+ + YSAL++G    N      
Sbjct: 580 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGAR 639

Query: 214 ----------------------------RLDDAE--LLLHEMCERGLTPNDVIFTTLIDG 243
                                       RL D +  L + +  ++   P + ++  L+ G
Sbjct: 640 ALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVG 699

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GRI       EA ++  +M  +GL PDK   +I+ + +CK    ++ L+  K ++ 
Sbjct: 700 LCKEGRI------IEADQLTQDMVKHGLFPDKAISSII-EHYCKTCKYDNCLEFMKLVLD 752

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
                   ++  +I G    G+V EA++++ ++++
Sbjct: 753 NKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 787



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+  ++N L+  LCKEG+I +A  +  +  K GL     + +++I  +CK    D     
Sbjct: 688 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEF 746

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             ++  +   P   +Y  +I+GL  E R+ +A+ L+ ++        +V  T  I+
Sbjct: 747 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIE 802



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 39/168 (23%)

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           VV+    L  M ++G +     Y+ ++ C  K       F + + M ++G +     Y  
Sbjct: 74  VVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRT 133

Query: 386 LMNGLCKHGQLKNANML----------LDTML------------DLGVV----------- 412
           ++N LCK+G ++ A M           LDT +            DLG             
Sbjct: 134 VVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEE 193

Query: 413 ---PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
              P+ +TY+IL+ G C+ G  E+  +L+    EKG       YT L+
Sbjct: 194 SCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLI 241


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/524 (27%), Positives = 246/524 (46%), Gaps = 73/524 (13%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG--SSASLFASILETRGTHLP 58
           P+F+ T  + S M+H LV     S A+  L  ++ + G+      +   S     G++  
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSN-- 164

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
             V D L+  YV    L +A + F LLR   F +    C  LI  ++R     +  G Y 
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQ 224

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EI   G   +VY  N++++ LCK+GK++       +  ++G++   V++NTLI+ +    
Sbjct: 225 EISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG 284

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++E F L + M G G  P VYTY+ +INGLCK  + + A+ +  EM   GL+P+   + 
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344

Query: 239 TLIDGHCKNGRI----DMAGDMKEARKIVDEMCTN------------------------- 269
           +L+   CK G +     +  DM+    + D +C +                         
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD + YTIL+ G+C++G +  A+++R EM+++G  +D V +  ++ G C+   + EA
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS--------------DG 375
           +++  EM +  L PD  T T++ID  CK G+ +    L ++M+               DG
Sbjct: 465 DKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG 524

Query: 376 H---------------------LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
                                 LP   +Y+ L+N LC  G L  A  + D M+   + P 
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPT 584

Query: 415 DITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            +  N +++G+C+ GN  D     +K+ SE G V D   Y +L+
Sbjct: 585 VMICNSMIKGYCRSGNASDGESFLEKMISE-GFVPDCISYNTLI 627



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 189/365 (51%), Gaps = 34/365 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+SP VY +N +++ LCK GK + A+ VF E  + GL   + ++ +L+   CK  ++ E 
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVET 359

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ S M    + PD+  +S++++   +   LD A +  + + E GL P++VI+T LI G
Sbjct: 360 EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419

Query: 244 HCKNGRIDMAGDMK-----------------------------EARKIVDEMCTNGLNPD 274
           +C+ G I +A +++                             EA K+ +EM    L PD
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             T TIL+DG CK G+L++A+++ ++M ++ I LD V +  L+ GF + G +  A+ +  
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+   + P   +Y+++++  C  G     FR+  EM S    P V   N+++ G C+ G
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSG 599

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK-GLVSDYAC 449
              +    L+ M+  G VPD I+YN L+ G  +  N         K++ E+ GLV D   
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFT 659

Query: 450 YTSLV 454
           Y S++
Sbjct: 660 YNSIL 664



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 168/345 (48%), Gaps = 31/345 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  F+ +M    + G +  A M F+   + GL    V +  LI G+C+   +     L
Sbjct: 373 PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNL 432

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           ++ M   G   DV TY+ +++GLCK   L +A+ L +EM ER L P+    T LIDGHCK
Sbjct: 433 RNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCK 492

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
            G +  A                             GD+  A++I  +M +  + P  I+
Sbjct: 493 LGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPIS 552

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y+IL++  C +G L  A  +  EMI + I+   +   ++I G+CR G   + E  L +M+
Sbjct: 553 YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMI 612

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD--GHLPAVETYNALMNGLCKHGQ 395
             G  PD  +Y  +I  F +  +    F L+K+M  +  G +P V TYN++++G C+  Q
Sbjct: 613 SEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQ 672

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           +K A ++L  M++ GV PD  TY  ++ G     N  +  ++  E
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDE 717



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 201/434 (46%), Gaps = 28/434 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL----------ET 52
           F   ++ Y+T+++ L  H  + +A+++   ++ + G+   ++ + S+L          ET
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEML-RSGLSPDSTTYRSLLMEACKKGDVVET 359

Query: 53  RGTH--------LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
                       +P LV   ++M ++   G LD A+  F  +++            LI  
Sbjct: 360 EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
             R  + +V +    E+L  G +  V  +N ++H LCK   + +A  +F+E  +R L   
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
           + +   LI+GHCK  NL     L   M+   +R DV TY+ L++G  K   +D A+ +  
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           +M  + + P  + ++ L++  C  G       + EA ++ DEM +  + P  +    ++ 
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGH------LAEAFRVWDEMISKNIKPTVMICNSMIK 593

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV--GL 341
           G+C+ G+        ++MI  G   D +++  LI GF R   + +A  ++++M +   GL
Sbjct: 594 GYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGL 653

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD  TY  ++  FC+    K    +L++M   G  P   TY  ++NG      L  A  
Sbjct: 654 VPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFR 713

Query: 402 LLDTMLDLGVVPDD 415
           + D ML  G  PDD
Sbjct: 714 IHDEMLQRGFSPDD 727



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 130/275 (47%), Gaps = 26/275 (9%)

Query: 201 TYSALINGLCKENRLDDAELLLHEMCER-GLT----------------PNDVIFTTLIDG 243
           + SA+I+ L +  RL DA+  L  M  R G++                 ND +F  LI  
Sbjct: 115 SLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRT 174

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + +      A  ++EA +    + + G          L+    + G +E A  + +E+ +
Sbjct: 175 YVQ------ARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+ ++      +++  C+ GK+ +    L ++ + G+ PD  TY  +I  +   G  + 
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            F L+  M   G  P V TYN ++NGLCKHG+ + A  +   ML  G+ PD  TY  LL 
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
             CK G+  + +K+ S+   + +V D  C++S++S
Sbjct: 349 EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMS 383


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 189/338 (55%), Gaps = 41/338 (12%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ + +L+ +LC+EGKI++A  VF +  K GL    ++FN LING+CK   +   F+L
Sbjct: 310 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 369

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            SVME    +P++ TY+ L+ GLC+ ++   A LLL  + + GL P+ V +  L+DG CK
Sbjct: 370 LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCK 429

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+++MA +      I + M + GL PD  T+T L+DG CK G LE A  I   M+K+GI
Sbjct: 430 EGQLNMAFN------IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 483

Query: 307 ELDNVAFTALISGFCRGG-----------------------------------KVVEAER 331
            LD V FTALI G C+ G                                   K+ EA  
Sbjct: 484 SLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANA 543

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           ML +M+K GL P   T+T++I+  C+ G+T    ++L+ M+  G  P V TY  ++NGLC
Sbjct: 544 MLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC 603

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +G+++ A  +L +M   GV P+  TY +L++ H K G
Sbjct: 604 NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 641



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 220/458 (48%), Gaps = 49/458 (10%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           FRL+   YST++                 + ++K  MG  A L    +   G  L G+  
Sbjct: 132 FRLSYPCYSTLL-----------------MCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 174

Query: 63  DALMIVYVDLGFLDDA-IQCFRLLRKHYFRIPARGCRCLI-DRMMRTNLPTVTLGFYLEI 120
             ++      GF+  A + C ++LR   F +    C  L+     R +L      F    
Sbjct: 175 RTVVNALCKNGFVQAAEMFCCKVLRLG-FGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 233

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
            +    P+   +++L+H LC+ G++++A  +  E  ++G   +  ++  LI   C     
Sbjct: 234 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 293

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+  ++   M      P+V+TY+ LI+ LC+E ++++A  +  +M + GL P  + F  L
Sbjct: 294 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 353

Query: 241 IDGHCKNGRIDMA-------------GDMKEARKIVDEMCT----------------NGL 271
           I+G+CK G +  A              +++   ++++ +C                 NGL
Sbjct: 354 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 413

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD++TY IL+DGFCKEG L  A +I   M   G+E D   FTALI G C+ G++ +A  
Sbjct: 414 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 473

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L  M+K G+  D+ T+T +ID  CK G  K    L + M  +  L    T+N  ++ L 
Sbjct: 474 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 533

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           K  +L  AN +L  M+  G+VP  +T+ IL+EGHC+ G
Sbjct: 534 KDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 571



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 201/400 (50%), Gaps = 15/400 (3%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           +++GF+  A   +R +    F +     R +++ + +         F  ++L  G+    
Sbjct: 149 LNMGFV--AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDT 206

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +V   L+   C+   + +A  VF++  K       +V+++ LI+G C+A  L+E F+LK 
Sbjct: 207 HVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQ 266

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G +P   TY+ LI   C     D A  +L EM  +   PN   +T LID  C+ G
Sbjct: 267 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 326

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +I+      EA  +  +M  +GL P  IT+  L++G+CKEG + SA  +   M K   + 
Sbjct: 327 KIE------EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKP 380

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   +  L+ G CR  K  +A  +LR ++  GL PD  TY +++D FCK G     F + 
Sbjct: 381 NIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIF 440

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M S G  P   T+ AL++GLCK G+L+ AN +L +M+  G+  D++T+  L++GHCK 
Sbjct: 441 NSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKI 500

Query: 429 GNPED----FDKLQSEKGLVS--DYACYTSLVSKSSKYRQ 462
           G  +D    F+ +   + L +   + C+   + K  K  +
Sbjct: 501 GKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNE 540



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 156/317 (49%), Gaps = 45/317 (14%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           + + FN  +  L K+ K+ +A  +  +  K GL  + V+   LI GHC+A       ++ 
Sbjct: 521 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML 580

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+ +G  P+VYTY+ +INGLC   R+++AE +L  M   G++PN   +  L+  H K 
Sbjct: 581 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKA 640

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC------------KEGDLES-- 293
           GR+D       A +IV  M  NG  P+   Y+ LL GF               GDL++  
Sbjct: 641 GRLD------RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS 694

Query: 294 -----------------------ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                                  AL IR E+ K G+  +++ +  L+ G C+ G+++EA+
Sbjct: 695 LSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDL-YNFLVVGLCKEGRIIEAD 753

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++ ++M+K GL PD A  + +I+ +CK          +K +  +  +P+  +Y  +++GL
Sbjct: 754 QLTQDMVKHGLFPDKAISS-IIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGL 812

Query: 391 CKHGQLKNANMLLDTML 407
              G+++ A  L+  ++
Sbjct: 813 RNEGRVQEAQKLVSDLV 829



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 70/330 (21%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G R     YS L+  L K N    A L+   M   G     + + T+++  CKNG +  A
Sbjct: 131 GFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAA 190

Query: 254 -----------------------------GDMKEARKIVDEMCT-NGLNPDKITYTILLD 283
                                         D+ EA ++ ++M       P+ +TY+IL+ 
Sbjct: 191 EMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIH 250

Query: 284 GFCKEGDLESALDIRKEMIKRGIE-------------------------LDNVA------ 312
           G C+ G LE A  +++EM+++G +                         LD +A      
Sbjct: 251 GLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVP 310

Query: 313 ----FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               +T LI   CR GK+ EA  + R+MLK GL P   T+  +I+ +CK G   + F+LL
Sbjct: 311 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL 370

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M      P + TYN LM GLC+  +   A +LL  ++D G++PD +TYNIL++G CK 
Sbjct: 371 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 430

Query: 429 GNP----EDFDKLQSEKGLVSDYACYTSLV 454
           G        F+ + S  GL  D   +T+L+
Sbjct: 431 GQLNMAFNIFNSMNS-AGLEPDGFTFTALI 459



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 124/275 (45%), Gaps = 43/275 (15%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R     ++L     +   G SP+VY + ++++ LC  G++++A+ +       G
Sbjct: 563 LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFG 622

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN------ 213
           +     ++  L+  H KA  LD  F++ S M  +G +P+ + YSAL++G    N      
Sbjct: 623 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGAR 682

Query: 214 ----------------------------RLDDAE--LLLHEMCERGLTPNDVIFTTLIDG 243
                                       RL D +  L + +  ++   P + ++  L+ G
Sbjct: 683 ALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVG 742

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GRI       EA ++  +M  +GL PDK   +I+ + +CK    ++ L+  K ++ 
Sbjct: 743 LCKEGRI------IEADQLTQDMVKHGLFPDKAISSII-EHYCKTCKYDNCLEFMKLVLD 795

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
                   ++  +I G    G+V EA++++ ++++
Sbjct: 796 NKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 830



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+  ++N L+  LCKEG+I +A  +  +  K GL     + +++I  +CK    D     
Sbjct: 731 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEF 789

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             ++  +   P   +Y  +I+GL  E R+ +A+ L+ ++        +V  T  I+
Sbjct: 790 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIE 845



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 39/168 (23%)

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           VV+    L  M ++G +     Y+ ++ C  K       F + + M ++G +     Y  
Sbjct: 117 VVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRT 176

Query: 386 LMNGLCKHGQLKNANML----------LDTML------------DLGVV----------- 412
           ++N LCK+G ++ A M           LDT +            DLG             
Sbjct: 177 VVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEE 236

Query: 413 ---PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
              P+ +TY+IL+ G C+ G  E+  +L+    EKG       YT L+
Sbjct: 237 NCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLI 284


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 232/488 (47%), Gaps = 36/488 (7%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--RGTHLPG 59
           +F  +  ++  ++H LV   ++  A     L        +   LF S L++  +      
Sbjct: 88  NFDHSTTSFCILIHALVQSNLYWPASS--LLQTLLLRGLNPEGLFESFLDSYRKCNFSTT 145

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           L  D L+  YV      D +   RL+         R    +++ ++R     + L  + E
Sbjct: 146 LGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDE 205

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I+  G  P VYV+  ++  LC+      A+ V       G   +  ++N  I G CK + 
Sbjct: 206 IVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQR 265

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +K+++   G+R DV TY  L+ GLCK    +  E +++EM E G  P++   + 
Sbjct: 266 VWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSN 325

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           L+DG  K G I  A                             G + EA  + + M   G
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L P+ +TY+IL+D FCK G L+ AL    +M + GI+     +++LISG C+ GK+  A+
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  EM+  GLKP+   YT +I  +CK G+    FRL  EM   G  P   T+ AL++GL
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-EDFDKLQS--EKGLVSDY 447
           C   ++  AN L   M++  V+P+++TYN+L+EGHCK GN    F+ L    EKGLV D 
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565

Query: 448 ACYTSLVS 455
             Y  L+S
Sbjct: 566 YTYRPLIS 573



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 193/366 (52%), Gaps = 18/366 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +     V L F  ++ + G   +VY ++ L+   CK GK++ A+ +FDE    G
Sbjct: 396 LIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG 455

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V + +LI+G+CK   L   FRL   M G G+ P+ YT++ALI+GLC  NR+ +A 
Sbjct: 456 LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM E  + PN+V +  LI+GHCK       G+   A +++DEM   GL PD  TY 
Sbjct: 516 KLFGEMVEWNVIPNEVTYNVLIEGHCKE------GNTVRAFELLDEMVEKGLVPDTYTYR 569

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDN--------VAFTALISGFCRGGKVVEAER 331
            L+ G C  G +  A +   ++     +L+         V +TALI+G C+ G + +AE 
Sbjct: 570 PLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAEL 629

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           + REML     P+  TY   +D     G+ +   + L ++  +G L    TYN L+ G C
Sbjct: 630 LCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ-LHDVLLEGFLANTVTYNILIRGFC 688

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
           K G+++ A  +L  M+D G+ PD I+Y+ ++  +C+ G+ ++  KL      +G+  D  
Sbjct: 689 KLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTV 748

Query: 449 CYTSLV 454
            Y  L+
Sbjct: 749 AYNFLI 754



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 183/348 (52%), Gaps = 38/348 (10%)

Query: 120 ILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +L Y G    V  +  L+  LCK  + +  + + +E  + G   +  + + L++G  K  
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKG 334

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+   F L + ++  G+ P ++ Y+ALIN +CK+ +LD+AE L + M  +GL PNDV ++
Sbjct: 335 NIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYS 394

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            LID  CK G++D+A                             G ++ A+ + DEM  N
Sbjct: 395 ILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIAN 454

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P+ + YT L+ G+CKEG+L +A  +  EM  +GI  +   FTALISG C   ++ EA
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++  EM++  + P++ TY ++I+  CK G+T   F LL EM   G +P   TY  L++G
Sbjct: 515 NKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISG 574

Query: 390 LCKHGQLKNANMLLDTMLD--------LGVVPDDITYNILLEGHCKHG 429
           LC  G++  A   ++ +           G +P+ +TY  L+ G CK G
Sbjct: 575 LCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIG 622



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 156/306 (50%), Gaps = 9/306 (2%)

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           +T + F+ LI  + + +   +G  +  +M   G+ P + T S ++NGL +  +   A  L
Sbjct: 143 STTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHL 202

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
             E+   GL P+  ++T ++   C+        D   AR+++  M ++G +    TY + 
Sbjct: 203 FDEIVSSGLRPDVYVYTAVVRSLCE------LKDFIRAREVIGRMESSGCDLSVATYNVF 256

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G CK   +  A++I+  +  +G+  D   +  L+ G C+  +    E M+ EM++ G 
Sbjct: 257 IRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGF 316

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P +A  + ++D   K G+  + F L+ +++  G  P++  YNAL+N +CK G+L  A  
Sbjct: 317 VPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAES 376

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSS 458
           L + M   G+ P+D+TY+IL++  CK G  +    F    +E G+ +    Y+SL+S   
Sbjct: 377 LFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHC 436

Query: 459 KYRQKR 464
           K  + R
Sbjct: 437 KLGKLR 442



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L     P+   +   +  L  EG I+ A  + D     G  A  V++N LI G CK  
Sbjct: 633 EMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL-LEGFLANTVTYNILIRGFCKLG 691

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E   +   M  SG+ PD  +YS +I   C+   L +A  L   M  RG+ P+ V + 
Sbjct: 692 RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYN 751

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            LI G C      + G++ +A ++ D+M   G+ P++ TY  L+ G C    + S  D
Sbjct: 752 FLIYGCC------VTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTAD 803


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 210/407 (51%), Gaps = 39/407 (9%)

Query: 85  LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
           +RKH F         L+  +      +     Y  ++  GYSP V  +N L+H  CK G+
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + +A  +FD   KRG     V++N LING CKA  LDE  R+   M    + PDV TY++
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR--------------- 249
           L+NGLCK  R+D+A +L+    ++G +PN + ++TLI G C+  R               
Sbjct: 121 LVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 250 ----------IDMAGDMKEAR-----KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                     I + G +KE R     ++   +  +GL PD ITYT+ +DG CK G +E A
Sbjct: 178 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDA 237

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L + K+M ++G   D V+  A+I+G C+  +V EAE +L  M   G  P+  ++  +I  
Sbjct: 238 LLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICG 297

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK---HGQLKNANMLLDTMLDLGV 411
            C+ G  K      KEM   G  P V TYN L++GLCK    G++K A  L D M++ G 
Sbjct: 298 QCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGR 357

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           VPD +TY+ L++G  K G  +D  +L      KG + +   Y SL+S
Sbjct: 358 VPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 404



 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 190/345 (55%), Gaps = 13/345 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G+ P+   +N L+  LC  G++ DAQ +++   K G     V++NTL++G CK   LDE
Sbjct: 4   HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDE 63

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             ++       G  PDV TY+ALING CK ++LD+A+ +L  M    L P+ V + +L++
Sbjct: 64  ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVN 123

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE-GDLESALDIRKEM 301
           G CKNGR+D      EAR ++ +    G +P+ ITY+ L+ G C+E   +  AL +   +
Sbjct: 124 GLCKNGRVD------EARMLIVD---KGFSPNVITYSTLISGLCRELRGVSEALKLFGSV 174

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +K+G E +   +  LI G  +  +V EA  +   ++K GL+PD  TYT+ ID  CK G  
Sbjct: 175 LKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    +LK+M   G +P V ++NA++NGLCK  ++  A +LL  M   G  P+ I++N L
Sbjct: 235 EDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 294

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQK 463
           + G C+ G  +       E   +G+      Y  LV    K RQ+
Sbjct: 295 ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 339



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 171/307 (55%), Gaps = 10/307 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGK-IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           I+D G+SP+V  ++ L+  LC+E + + +A  +F    K+G      ++N LI+G  K  
Sbjct: 138 IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKED 197

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++E F L S +   G+ PD  TY+  I+GLCK  R++DA L+L +M E+G  P+ V   
Sbjct: 198 RVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHN 257

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I+G CK  R+D      EA  ++  M   G +P+ I++  L+ G C+ G  + A+   
Sbjct: 258 AVINGLCKEKRVD------EAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTF 311

Query: 299 KEMIKRGIELDNVAFTALISGFCRG---GKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           KEM+KRG++   V +  L+ G C+    G++ EA  +   M++ G  PD  TY+ +ID  
Sbjct: 312 KEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL 371

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K G      RLL  M + G +P V TYN+L++GLC   ++  A  L   M++ G VPD 
Sbjct: 372 GKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDT 431

Query: 416 ITYNILL 422
           ITY  ++
Sbjct: 432 ITYGTII 438



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 148/280 (52%), Gaps = 9/280 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  +L  GY P V  +N+L+  L KE ++ +A  +F    K GL   A+++   I+
Sbjct: 167 ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CKA  +++   +   M+  G  PDV +++A+INGLCKE R+D+AE+LL  M  +G +P
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSP 286

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK---EG 289
           N + F TLI G C+      AG  K+A     EM   G+ P  +TY IL+DG CK   EG
Sbjct: 287 NAISFNTLICGQCR------AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEG 340

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A+ +   MI++G   D V ++ALI G  + GK+ +A R+L  M   G  P+  TY 
Sbjct: 341 RIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYN 400

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            +I   C          L   M   G +P   TY  +++ 
Sbjct: 401 SLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 22/343 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+++V+ L  +    +AR    +++  KG   +   +++++      L G+         
Sbjct: 118 YNSLVNGLCKNGRVDEAR----MLIVDKGFSPNVITYSTLISGLCRELRGV--------- 164

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
                  +A++ F  + K  +         LID +++ +        +  ++ +G  P  
Sbjct: 165 ------SEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDA 218

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             + V +  LCK G+++DA ++  +  ++G     VS N +ING CK K +DE   L S 
Sbjct: 219 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 278

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ME  G  P+  +++ LI G C+  +   A     EM +RG+ P  V +  L+DG CK  +
Sbjct: 279 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 338

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
               G +KEA  + D M   G  PD +TY+ L+DG  K G L+ A  +   M  +G   +
Sbjct: 339 ---EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 395

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
              + +LISG C   KV EA  +   M++ G  PD  TY  +I
Sbjct: 396 VYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 232/488 (47%), Gaps = 36/488 (7%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--RGTHLPG 59
           +F  +  ++  ++H LV   ++  A     L        +   LF S L++  +      
Sbjct: 88  NFDHSTTSFCILIHALVQSNLYWPASS--LLQTLLLRGLNPEGLFESFLDSYRKCNFSTT 145

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           L  D L+  YV      D +   RL+         R    +++ ++R     + L  + E
Sbjct: 146 LGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDE 205

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I+  G  P VYV+  ++  LC+      A+ V       G   +  ++N  I G CK + 
Sbjct: 206 IVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQR 265

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +K+++   G+R DV TY  L+ GLCK    +  E +++EM E G  P++   + 
Sbjct: 266 VWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSN 325

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           L+DG  K G I  A                             G + EA  + + M   G
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L P+ +TY+IL+D FCK G L+ AL    +M + GI+     +++LISG C+ GK+  A+
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  EM+  GLKP+   YT +I  +CK G+    FRL  EM   G  P   T+ AL++GL
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-EDFDKLQS--EKGLVSDY 447
           C   ++  AN L   M++  V+P+++TYN+L+EGHCK GN    F+ L    EKGLV D 
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565

Query: 448 ACYTSLVS 455
             Y  L+S
Sbjct: 566 YTYRPLIS 573



 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 196/392 (50%), Gaps = 43/392 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +     V L F  ++ + G   +VY ++ L+   CK GK++ A+ +FDE    G
Sbjct: 396 LIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG 455

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V + +LI+G+CK   L   FRL   M G G+ P+ YT++ALI+GLC  NR+ +A 
Sbjct: 456 LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY- 278
            L  EM E  + PN+V +  LI+GHCK       G+   A +++DEM   GL PD  TY 
Sbjct: 516 KLFGEMVEWNVIPNEVTYNVLIEGHCKE------GNTVRAFELLDEMVEKGLVPDTYTYR 569

Query: 279 ----------------------------------TILLDGFCKEGDLESALDIRKEMIKR 304
                                             + LL G+CKEG L+ ALD  +EM+ R
Sbjct: 570 PLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGR 629

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+ +D V ++ LI G  R         +L++M   GL+PD+  YT +ID   K G+ K  
Sbjct: 630 GVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMA 689

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F L   M S+G LP V TY AL+NGLCK G +  A +L   ML    +P+  TY   L+ 
Sbjct: 690 FGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDY 749

Query: 425 HCKHGNPEDFDKLQSE--KGLVSDYACYTSLV 454
               GN E   +L     +G +++   Y  L+
Sbjct: 750 LTSEGNIEKAIQLHDVLLEGFLANTVTYNILI 781



 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 198/378 (52%), Gaps = 33/378 (8%)

Query: 120 ILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +L Y G    V  +  L+  LCK  + +  + + +E  + G   +  + + L++G  K  
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKG 334

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+   F L + ++  G+ P ++ Y+ALIN +CK+ +LD+AE L + M  +GL PNDV ++
Sbjct: 335 NIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYS 394

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            LID  CK G++D+A                             G ++ A+ + DEM  N
Sbjct: 395 ILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIAN 454

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P+ + YT L+ G+CKEG+L +A  +  EM  +GI  +   FTALISG C   ++ EA
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++  EM++  + P++ TY ++I+  CK G+T   F LL EM   G +P   TY  L++G
Sbjct: 515 NKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISG 574

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LC  G++  A   ++ +       +++ ++ LL G+CK G  +D      E   +G+  D
Sbjct: 575 LCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMD 634

Query: 447 YACYTSLVSKSSKYRQKR 464
             CY+ L+    + + +R
Sbjct: 635 LVCYSVLIYGILRQQDRR 652



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 190/366 (51%), Gaps = 34/366 (9%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G +PS++V+N L++ +CK+GK+ +A+ +F+  G +GL    V+++ LI+  CK   LD 
Sbjct: 349 FGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
                  M   G++  VY YS+LI+G CK  +L  A+ L  EM   GL PN VI+T+LI 
Sbjct: 409 ALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLIS 468

Query: 243 GHCKNGRI--------DMAGD---------------------MKEARKIVDEMCTNGLNP 273
           G+CK G +        +M G                      M EA K+  EM    + P
Sbjct: 469 GYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIP 528

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           +++TY +L++G CKEG+   A ++  EM+++G+  D   +  LISG C  G+V EA   +
Sbjct: 529 NEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            ++     K ++  ++ ++  +CK G         +EM   G    +  Y+ L+ G+ + 
Sbjct: 589 NDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
              ++   LL  M D G+ PD++ Y  +++ + K GN +     +D + SE G + +   
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSE-GCLPNVVT 707

Query: 450 YTSLVS 455
           YT+L++
Sbjct: 708 YTALIN 713



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 182/405 (44%), Gaps = 66/405 (16%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+   G SP+ Y F  L+  LC   ++ +A  +F E  +  +    V++N LI GHC
Sbjct: 482 LYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHC 541

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  N    F L   M   G+ PD YTY  LI+GLC   R+ +A   ++++       N++
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEM 601

Query: 236 IFTTLIDGHCKNGRIDMAGD--------------------------MKEARKIVD---EM 266
            F+ L+ G+CK GR+D A D                           ++ R I+D   +M
Sbjct: 602 CFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQM 661

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL PD + YT ++D   K G+L+ A  +   M+  G   + V +TALI+G C+ G +
Sbjct: 662 HDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLM 721

Query: 327 VEAERMLREMLKVGLKPDD----------------------------------ATYTMVI 352
            +AE + REML     P+                                    TY ++I
Sbjct: 722 DKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILI 781

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             FCK G  +    +L  M   G  P   +Y+ ++   C+ G LK A  L ++ML+ GV 
Sbjct: 782 RGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVN 841

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           PD + YN L+ G C  G      +L+ +   +G+  + A Y SL+
Sbjct: 842 PDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 886



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 136/273 (49%), Gaps = 7/273 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G +  +  ++VL++ + ++   +    +  +   +GL    V + T+I+ + KA 
Sbjct: 625 EMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAG 684

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL   F L  +M   G  P+V TY+ALINGLCK   +D AELL  EM      PN   + 
Sbjct: 685 NLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYA 744

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
             +D     G I+ A  +        ++   G   + +TY IL+ GFCK G ++ A ++ 
Sbjct: 745 CFLDYLTSEGNIEKAIQLH-------DVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVL 797

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             MI  GI  D ++++ +I  +CR G + EA ++   ML  G+ PD   Y  +I   C  
Sbjct: 798 VNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVT 857

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           G+    F L  +M   G  P   TYN+L++G C
Sbjct: 858 GELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 890



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 156/306 (50%), Gaps = 9/306 (2%)

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           +T + F+ LI  + + +   +G  +  +M   G+ P + T S ++NGL +  +   A  L
Sbjct: 143 STTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHL 202

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
             E+   GL P+  ++T ++   C+        D   AR+++  M ++G +    TY + 
Sbjct: 203 FDEIVSSGLRPDVYVYTAVVRSLCE------LKDFIRAREVIGRMESSGCDLSVATYNVF 256

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G CK   +  A++I+  +  +G+  D   +  L+ G C+  +    E M+ EM++ G 
Sbjct: 257 IRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGF 316

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P +A  + ++D   K G+  + F L+ +++  G  P++  YNAL+N +CK G+L  A  
Sbjct: 317 VPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAES 376

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSS 458
           L + M   G+ P+D+TY+IL++  CK G  +    F    +E G+ +    Y+SL+S   
Sbjct: 377 LFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHC 436

Query: 459 KYRQKR 464
           K  + R
Sbjct: 437 KLGKLR 442



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 7/222 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID   +     +  G +  ++  G  P+V  +  L++ LCK G +  A+++  E     
Sbjct: 676 MIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASN 735

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++   ++      N+++  +L  V+   G   +  TY+ LI G CK  R+ +A 
Sbjct: 736 SLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL-EGFLANTVTYNILIRGFCKLGRIQEAA 794

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L  M + G++P+ + ++T+I  +C+       GD+KEA K+ + M   G+NPD + Y 
Sbjct: 795 EVLVNMIDSGISPDCISYSTIIYEYCRR------GDLKEAIKLWESMLNRGVNPDTVAYN 848

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            L+ G C  G+L  A ++R +M++RG++ +   + +LI G C
Sbjct: 849 FLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 890



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L     P+   +   +  L  EG I+ A  + D     G  A  V++N LI G CK  
Sbjct: 730 EMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL-LEGFLANTVTYNILIRGFCKLG 788

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E   +   M  SG+ PD  +YS +I   C+   L +A  L   M  RG+ P+ V + 
Sbjct: 789 RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYN 848

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            LI G C      + G++ +A ++ D+M   G+ P++ TY  L+ G C    + S  D
Sbjct: 849 FLIYGCC------VTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTAD 900


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 220/425 (51%), Gaps = 7/425 (1%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           +L +  TM+H L  HK    A++LL  I  +  + S + L A +           +L  L
Sbjct: 99  SLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWL 158

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +I Y +     DAIQ F  +R H F+     C  L++ + +  L  +    Y +++  G 
Sbjct: 159 VIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGV 218

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P++++FNVL+H  CK G ++ A+ + +E   R +     ++NTLI+ +CK     E   
Sbjct: 219 VPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALG 278

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKE-NRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           ++  ME  G+ PD+ TY++LI G C+E N L++A  L   M   GL P  V + +++   
Sbjct: 279 IQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 338

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C+ G+I      K+A ++++EM    + PD +T   L++ +CK GD+ SA+ ++K+M++ 
Sbjct: 339 CEEGKI------KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEA 392

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G++ D   F ALI GFC+  +V  A+  L EML  G  P  +TY+ ++D +    + +  
Sbjct: 393 GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAV 452

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            RL  E+   G    +  Y AL+  LCK  ++++A  +   M   G+  D + Y  L   
Sbjct: 453 IRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYA 512

Query: 425 HCKHG 429
           + K G
Sbjct: 513 YFKAG 517



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A+ + + M   G +    A T L++   +        ++ ++M++VG+ P+   + ++
Sbjct: 169 QDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVL 228

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I   CK+GD +   +LL EM S    P + TYN L++  CK G    A  + D M   GV
Sbjct: 229 IHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGV 288

Query: 412 VPDDITYNILLEGHCKHGN 430
            PD +TYN L+ G C+  N
Sbjct: 289 SPDIVTYNSLIYGFCREVN 307



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 8/219 (3%)

Query: 49  ILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           ++E  G H PG+V  ++++    + G + DA +    + +         C  LI+   + 
Sbjct: 318 VMEVEGLH-PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 376

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                 +    ++L+ G  P  + F  L+H  CK  ++  A+    E    G   +  ++
Sbjct: 377 GDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTY 436

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + L++ +    N +   RL   +   G+  D+  Y ALI  LCK ++++ AE +   M  
Sbjct: 437 SWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQG 496

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G+  + V++T+L   + K G+   A DM      +DEM
Sbjct: 497 KGMKGDSVVYTSLAYAYFKAGKAIAASDM------LDEM 529



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+LD G+SPS   ++ L+     +   +    + DE  ++GL      +  LI   C
Sbjct: 420 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 479

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   ++   R+ ++M+G GM+ D   Y++L     K  +   A  +L EM +R L     
Sbjct: 480 KIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLK 539

Query: 236 IFTTLIDGHCKNGRI 250
           I+      +  +G I
Sbjct: 540 IYRCFSASYAGDGSI 554


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 243/484 (50%), Gaps = 48/484 (9%)

Query: 22  MHSQARDLLHLIVSKKGMG---SSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           ++S A+ LL  ++S K      +S+SL   + E+  +     + + ++  YV    LD +
Sbjct: 54  LYSHAQSLLLQVISGKIQSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSS 113

Query: 79  IQCFRLLRKHYFRIPARGC------------------RCLIDRMMRTNLPTVTLGFYL-- 118
           I  F  +    F +P   C                  R   +  ++ +L   + G  +  
Sbjct: 114 ISYFNEMVDKGF-VPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKG 172

Query: 119 ---------------EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
                          E+ ++G+SP+V ++  L+   CK G+I+ A+ +F E GK GL A 
Sbjct: 173 CCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVAN 232

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             ++  LI+G  K     +GF +   M+  G+ P++YTY+ ++N  CK+ R  DA  L  
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFD 292

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM ERG++ N V + TLI G C+  + +      EA K++D+M ++G+NP+ ITY  L+D
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKAN------EANKVMDQMKSDGINPNLITYNTLID 346

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFC  G L  AL + +++  RG+    V +  L+SGFC+ G    A ++++EM + G+KP
Sbjct: 347 GFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              TYT++ID F +  + +   +L   M   G  P V TY+ L++G C  GQ+  A+ L 
Sbjct: 407 SKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLF 466

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKY 460
             M+   + P+ + YN ++ G+CK G+     +L     EK L  + A Y  ++    K 
Sbjct: 467 KLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKE 526

Query: 461 RQKR 464
           R+ +
Sbjct: 527 RKSK 530



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 177/322 (54%), Gaps = 6/322 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +  +       Y ++ + G  P++Y +N +M++ CK+G+ KDA  +FDE  +RG
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERG 298

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++NTLI G C+    +E  ++   M+  G+ P++ TY+ LI+G C   +L  A 
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  ++  RGL+P+ V +  L+ G CK G    AG      K+V EM   G+ P KITYT
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAG------KVVKEMEERGIKPSKITYT 412

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+D F +  ++E A+ +R  M + G+  D   ++ LI GFC  G++ EA R+ + M+  
Sbjct: 413 ILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAK 472

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L+P+   Y  ++  +CK G +    RL +EM      P V +Y  ++  LCK  + K A
Sbjct: 473 KLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEA 532

Query: 400 NMLLDTMLDLGVVPDDITYNIL 421
             L++ M+D G+ P D   N++
Sbjct: 533 EGLVEKMIDTGIDPSDSILNLI 554



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 150/281 (53%), Gaps = 6/281 (2%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C++++  +          + E+ + G S ++  +N L+  LC+E K  +A  V D+    
Sbjct: 273 CVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSD 332

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G++   +++NTLI+G C    L +   L   ++  G+ P + TY+ L++G CK+     A
Sbjct: 333 GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGA 392

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             ++ EM ERG+ P+ + +T LID      R+D   +M++A ++   M   GL PD  TY
Sbjct: 393 GKVVKEMEERGIKPSKITYTILIDTF---ARMD---NMEKAIQLRSPMEELGLTPDVHTY 446

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           ++L+ GFC +G +  A  + K M+ + +E + V +  ++ G+C+ G    A R+ REM +
Sbjct: 447 SVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEE 506

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
             L P+ A+Y  +I+  CK   +K    L+++M   G  P+
Sbjct: 507 KELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS 547


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 200/384 (52%), Gaps = 29/384 (7%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           +  +G L   + CF  + ++           LID   +        G    +   G  P+
Sbjct: 20  FCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPN 79

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +NV+++ LC+EG +K+A  + +E G +G     V++NTL+NG+CK  N  +   + +
Sbjct: 80  LISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHA 139

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +G+ P V TY+ALIN +CK   L+ A     +M  RGL PN+  +TTLIDG  + G
Sbjct: 140 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 199

Query: 249 RIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYT 279
            ++ A                               M+EA  +V EM   GL PD ++Y+
Sbjct: 200 LLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 259

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ GFC++G+L+ A  +++EM+++G+  D V +++LI G C   ++ EA  + +EML +
Sbjct: 260 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM 319

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL PD+ TYT +I+ +C  GD      L  EM   G LP   TY+ L+NGL K  + + A
Sbjct: 320 GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREA 379

Query: 400 NMLLDTMLDLGVVPDDITYNILLE 423
             LL  ++    VP D+TY+ L+E
Sbjct: 380 KRLLFKLIYEESVPSDVTYDTLIE 403



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 193/371 (52%), Gaps = 32/371 (8%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+VY +N+L+   C  G+++     F E  + G     V++NTLI+ +CK   +DE F 
Sbjct: 7   SPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFG 66

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   GM+P++ +Y+ +INGLC+E  + +A  +L EM  +G TP++V + TL++G+C
Sbjct: 67  LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 126

Query: 246 KNGRIDM-----------------------------AGDMKEARKIVDEMCTNGLNPDKI 276
           K G                                 A ++  A +  D+M   GL P++ 
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L+DGF ++G L  A  I  EM + G     V + A I G C   ++ EA  +++EM
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM 246

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           ++ GL PD  +Y+ +I  FC+ G+    F++ +EM   G  P   TY++L+ GLC+  +L
Sbjct: 247 VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRL 306

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A  L   MLD+G+ PD+ TY  L+  +C  G+      L  E   KG + D   Y+ L
Sbjct: 307 TEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVL 366

Query: 454 VSKSSKYRQKR 464
           ++  +K  + R
Sbjct: 367 INGLNKQARTR 377



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 178/369 (48%), Gaps = 44/369 (11%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E++  G SPSV  +  L++ +CK   +  A   FD+   RGL     ++ TLI+
Sbjct: 134 ALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 193

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +   L+E +R+ + M  SG  P V TY+A I+G C   R+++A  ++ EM E+GL P
Sbjct: 194 GFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 253

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIV 263
           + V ++T+I G C+ G +D A  MK                             EA  + 
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 313

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM   GL PD+ TYT L++ +C EGDL  AL +  EMI +G   D V ++ LI+G  + 
Sbjct: 314 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQ 373

Query: 324 GKVVEAERMLREMLKVGLKPDDATY-TMVIDC--------------FCKNGDTKTGFRLL 368
            +  EA+R+L +++     P D TY T++ +C              FC  G      R+ 
Sbjct: 374 ARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVF 433

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           + M    H P    YN +++G C+ G L  A  L   M+  G VP  +T   L++   K 
Sbjct: 434 ESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKE 493

Query: 429 GNPEDFDKL 437
           G  E+  ++
Sbjct: 494 GMNEEMSEV 502



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 185/373 (49%), Gaps = 21/373 (5%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L+ A++ F  +R    R   R    LID   R  L         E+ + G+SPSV  +N 
Sbjct: 166 LNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 225

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
            +H  C   ++++A  V  E  ++GL    VS++T+I+G C+   LD  F++K  M   G
Sbjct: 226 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD  TYS+LI GLC+  RL +A  L  EM + GL P++  +TTLI+ +C      + G
Sbjct: 286 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYC------VEG 339

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD-----IRKEMIKRGIELD 309
           D+ +A  + DEM   G  PD +TY++L++G  K+     A       I +E +   +  D
Sbjct: 340 DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYD 399

Query: 310 -------NVAF---TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
                  N+ F    ALI GFC  G + EA+R+   M++   KP +A Y ++I   C+ G
Sbjct: 400 TLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGG 459

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +    F L KEM   G +P   T   L+  L K G  +  + ++   L    + +     
Sbjct: 460 NLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAK 519

Query: 420 ILLEGHCKHGNPE 432
           +L+E + K GN E
Sbjct: 520 VLVEINHKEGNME 532



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 5/198 (2%)

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M  + ++P+  TY IL+ GFC  G+L+  L    EM + G   + V +  LI  +C+ G+
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + EA  +L+ M   G++P+  +Y ++I+  C+ G  K  + +L+EM   G  P   TYN 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----PEDFDKLQSEK 441
           L+NG CK G    A ++   M+  GV P  +TY  L+   CK  N     E FD+++  +
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI-R 179

Query: 442 GLVSDYACYTSLVSKSSK 459
           GL  +   YT+L+   S+
Sbjct: 180 GLRPNERTYTTLIDGFSR 197


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 191/342 (55%), Gaps = 9/342 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y +N ++  LCK GK  +A+ V  E   + +    V + TLI+G  K  ++   
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +    M    + PD  TY+ LI G  +  ++ + + L HEM  RGL P++V +TTLID 
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK      AG+M  A  + +EM   G+ P+ +TY  L+DG CK G+L++A ++  EM K
Sbjct: 443 YCK------AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++L+   + ++++G C+ G + +A ++++EM   G+ PD  TYT VID +C+ GD   
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDK 556

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +LL+EM   G  P V T+N LMNG C  G L++ + LL  ML+ G+VPD ITYN L++
Sbjct: 557 AHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMK 616

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
            HC   +     K+      +G+  D   Y  L+    K R 
Sbjct: 617 QHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARN 658



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 169/346 (48%), Gaps = 29/346 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           ++ E+L    SP    +  L+    + GK+ + Q +F E   RGL    V++ TLI+ +C
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  +   F L + M   GM P++ TY ALI+GLCK   LD A  LL EM ++GL  N  
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
           I+ ++++G CK G I+ A                             GD+ +A K++ EM
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEM 564

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL P  +T+ +L++GFC  G LE    +   M+++GI  D + +  L+   C    +
Sbjct: 565 LDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSM 624

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
               ++ + M   G+ PD  TY ++I   CK  + K  + L KEM   G++P V +YNAL
Sbjct: 625 NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +    K  +   A  L + M   G+V D   YN  ++   + G+ E
Sbjct: 685 IKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 174/335 (51%), Gaps = 13/335 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + P+   F++    L + G + +A+ + D+    GL  T  S N  ++   +  N  EG 
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGI 242

Query: 185 RLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +   V    G+  +  +Y+ +I  LC+  ++ +A  LL +M  R  TP+ V ++T+IDG
Sbjct: 243 EMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDG 302

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C        G++K+A K++D+M   GL P++ TY  ++   CK G    A  + +EM+ 
Sbjct: 303 YCH------LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS 356

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + I  DNV +T LI GF + G V  A +   EML   + PD  TYT +I  F + G    
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIE 416

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM S G  P   TY  L++  CK G++ NA  L + M+ +G+ P+ +TY  L++
Sbjct: 417 PQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G CKHG  +  ++L  E   KGL  +   Y S+V+
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+LD G  P+V  FNVLM+  C  G ++D   +     ++G+   A+++NTL+  HC   
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRN 622

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +++   ++   M   G+ PD  TY+ LI G CK   L +A  L  EM E+G  P    + 
Sbjct: 623 SMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI    K  +        EAR++ +EM  +GL  D   Y   +D   +EGD+E  L++ 
Sbjct: 683 ALIKRFYKKRK------FXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLC 736

Query: 299 KEMIKR 304
            E I++
Sbjct: 737 DEAIEK 742



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 20/168 (11%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D L+   ++ G + DAI    L+++H  R                N    T   Y  + +
Sbjct: 593 DRLLGWMLEKGIVPDAITYNTLMKQHCIR----------------NSMNTTTKIYKRMRN 636

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +P    +N+L+   CK   +K+A  ++ E  ++G   T  S+N LI    K +   E
Sbjct: 637 QGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXE 696

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              L   M G G+  D   Y+  ++ +C E    D E+ L+ +C+  +
Sbjct: 697 ARELFEEMRGHGLVADGEIYNFFVD-MCYEE--GDVEITLN-LCDEAI 740


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 191/342 (55%), Gaps = 9/342 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y +N ++  LCK GK  +A+ V  E   + +    V + TLI+G  K  ++   
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +    M    + PD  TY+ LI G  +  ++ + + L HEM  RGL P++V +TTLID 
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK      AG+M  A  + +EM   G+ P+ +TY  L+DG CK G+L++A ++  EM K
Sbjct: 443 YCK------AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++L+   + ++++G C+ G + +A ++++EM   G+ PD  TYT VID +C+ GD   
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDK 556

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +LL+EM   G  P V T+N LMNG C  G L++ + LL  ML+ G+VPD ITYN L++
Sbjct: 557 AHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMK 616

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
            HC   +     K+      +G+  D   Y  L+    K R 
Sbjct: 617 QHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARN 658



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 29/346 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           ++ E+L    SP    +  L+    + GK+ + Q +F E   RGL    V++ TLI+ +C
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  +   F L + M   GM P++ TY ALI+GLCK   LD A  LL EM ++GL  N  
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
           I+ ++++G CK G I+ A                             GD+ +A K++ EM
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEM 564

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL P  +T+ +L++GFC  G LE    +   M+++GI  D + +  L+   C    +
Sbjct: 565 LDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSM 624

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
               ++ + M   G+ PD  TY ++I   CK  + K  + L KEM   G++P V +YNAL
Sbjct: 625 NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +    K  ++  A  L + M   G+V D   YN  ++   + G+ E
Sbjct: 685 IKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 174/335 (51%), Gaps = 13/335 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + P+   F++    L + G + +A+ + D+    GL  T  S N  ++   +  N  EG 
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGI 242

Query: 185 RLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +   V    G+  +  +Y+ +I  LC+  ++ +A  LL +M  R  TP+ V ++T+IDG
Sbjct: 243 EMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDG 302

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C        G++K+A K++D+M   GL P++ TY  ++   CK G    A  + +EM+ 
Sbjct: 303 YCH------LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS 356

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + I  DNV +T LI GF + G V  A +   EML   + PD  TYT +I  F + G    
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIE 416

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM S G  P   TY  L++  CK G++ NA  L + M+ +G+ P+ +TY  L++
Sbjct: 417 PQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G CKHG  +  ++L  E   KGL  +   Y S+V+
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+LD G  P+V  FNVLM+  C  G ++D   +     ++G+   A+++NTL+  HC   
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRN 622

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +++   ++   M   G+ PD  TY+ LI G CK   L +A  L  EM E+G  P    + 
Sbjct: 623 SMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI    K  +I       EAR++ +EM  +GL  D   Y   +D   +EGD+E  L++ 
Sbjct: 683 ALIKRFYKKKKI------LEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLC 736

Query: 299 KEMIKR 304
            E I++
Sbjct: 737 DEAIEK 742



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D L+   ++ G + DAI    L+++H  R                N    T   Y  + +
Sbjct: 593 DRLLGWMLEKGIVPDAITYNTLMKQHCIR----------------NSMNTTTKIYKRMRN 636

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +P    +N+L+   CK   +K+A  ++ E  ++G   T  S+N LI    K K + E
Sbjct: 637 QGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILE 696

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              L   M G G+  D   Y+  ++ +C E    D E+ L+ +C+  +
Sbjct: 697 ARELFEEMRGHGLVADGEIYNFFVD-MCYEE--GDVEITLN-LCDEAI 740


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 223/458 (48%), Gaps = 31/458 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P+++ +L +  TM+H L   K    A+ LL  I  +  + + + L A +       +   
Sbjct: 72  PNYKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALVRLHDDPDINSH 131

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V   L+IVY +     +AIQ F  +  + FR     C  L++ + +  L  +    Y ++
Sbjct: 132 VFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKM 191

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
              G   +++V+NVL+H  CK G ++ A  +  E   + +     ++NTLI+ +CK    
Sbjct: 192 ARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMH 251

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   ++  ME  G++PD+ TY++LI+G CKE R+ +A  L  E+  R  TPN V +TTL
Sbjct: 252 YEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTYTTL 309

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           IDG+C+   +D A                             G +++A K+++EM    +
Sbjct: 310 IDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKI 369

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD +T   L++ +CK GD++SAL ++  M++ G++LD   + ALI GFC+  ++  A+ 
Sbjct: 370 EPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKE 429

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L  ML  G  P   TY+ ++D +C   + +   +L  E    G       Y AL+   C
Sbjct: 430 LLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFC 489

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           K  Q+  A  +   M + G + D + Y  L   + K G
Sbjct: 490 KREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLG 527



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 8/283 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  +N L+H  CKEG++++A  +F E   R      V++ TLI+G+C+  +LD+ 
Sbjct: 265 GIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTYTTLIDGYCRLNDLDQA 322

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL+  ME  G+ P V TY++++  LC+  R+ DA  LL+EM E+ + P++V   TLI+ 
Sbjct: 323 LRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINA 382

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK       GDMK A K+ + M   GL  D+ TY  L+ GFCK  +++ A ++   M+ 
Sbjct: 383 YCK------IGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLD 436

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G       ++ L+ G+C         ++  E ++ GL  D + Y  +I  FCK      
Sbjct: 437 AGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDY 496

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             ++   M+  G L     Y +L     K G+   A+ LLD M
Sbjct: 497 AKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEM 539



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 10/304 (3%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKGM   A      +E  G     +  ++L+  +   G + +A++ F+ +R      P  
Sbjct: 247 KKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD---ATPNH 303

Query: 96  GC-RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                LID   R N     L    E+   G  P+V  +N ++ KLC+ G+I+DA  + +E
Sbjct: 304 VTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNE 363

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             ++ +    V+ NTLIN +CK  ++    ++K+ M  +G++ D +TY ALI+G CK   
Sbjct: 364 MSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE 423

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +D A+ LL  M + G +P+   ++ L+DG+C         + +   K+ DE    GL  D
Sbjct: 424 MDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQ------QNEEAVLKLPDEFVRKGLCVD 477

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           K  Y  L+  FCK   ++ A  I   M ++G   D+V +T+L   + + GK   A  +L 
Sbjct: 478 KSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLD 537

Query: 335 EMLK 338
           EM K
Sbjct: 538 EMYK 541



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           L +LD G+SPS   ++ L+   C +   +    + DEF ++GL      +  LI   CK 
Sbjct: 432 LSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKR 491

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + +D   ++ S+M+  G   D   Y++L     K  + + A  LL EM +R L     I+
Sbjct: 492 EQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIY 551

Query: 238 TTL 240
             L
Sbjct: 552 RAL 554


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 143/523 (27%), Positives = 245/523 (46%), Gaps = 71/523 (13%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT-HLPG 59
           P+F+ T  + S M+H LV     S A+  +  ++ + G+ S   +  S++ T        
Sbjct: 97  PNFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGV-SRVEIVNSLVSTYSNCGSND 155

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
            V D L+  +V    L +A + F LLR   + +    C  LI  ++R     +    Y E
Sbjct: 156 SVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQE 215

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I   G   +VY  N++++ LCK+GK++       E  ++G++   V++NTLI+ +     
Sbjct: 216 ISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGL 275

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           ++E F L   M   G  P VYTY+ +INGLCK  + + A+ +  EM   GL+P+   + +
Sbjct: 276 MEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 335

Query: 240 LIDGHCKNGRI----DMAGDMKEARKIVDEMCTN-------------------------G 270
           L+   CK G      ++  DM+    + D +C +                         G
Sbjct: 336 LLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 395

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L PD + YTIL+ G+C++G +  A+++R EM+++G  +D V +  ++ G C+   + EA+
Sbjct: 396 LIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 455

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS--------------DGH 376
           ++  EM + GL PD  T T++ID  CK G+ +    L K+M+               DG 
Sbjct: 456 KLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGF 515

Query: 377 ---------------------LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
                                LP   +++ L+N LC  G L  A  + D M+   + P  
Sbjct: 516 GKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTV 575

Query: 416 ITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           +  N +++G+C+ GN  D     +K+ SE G V D   Y +L+
Sbjct: 576 MICNSMIKGYCRSGNASDGEIFLEKMISE-GFVPDCISYNTLI 617



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 187/365 (51%), Gaps = 34/365 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+SP VY +N +++ LCK GK + A+ VF E  + GL   + ++ +L+   CK  +  E 
Sbjct: 290 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVET 349

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + S M    + PD+  +S++++   +   LD A +  + + E GL P++VI+T LI G
Sbjct: 350 ENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 409

Query: 244 HCKNGRIDMAGDMK-----------------------------EARKIVDEMCTNGLNPD 274
           +C+ G I  A +++                             EA K+ +EM   GL PD
Sbjct: 410 YCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPD 469

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             T TIL+DG CK G+L++A+++ K+M ++ I+LD V +  L+ GF + G +  A+ +  
Sbjct: 470 SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWA 529

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+   + P   +++++++  C  G     FR+  EM S    P V   N+++ G C+ G
Sbjct: 530 DMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSG 589

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-----QSEKGLVSDYAC 449
              +  + L+ M+  G VPD I+YN L+ G  K  N      L     + + GLV D   
Sbjct: 590 NASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFT 649

Query: 450 YTSLV 454
           Y S++
Sbjct: 650 YNSIL 654



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 178/334 (53%), Gaps = 11/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  F+ +M    + G +  A M F+   + GL    V +  LI G+C+   + E   L
Sbjct: 363 PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNL 422

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           ++ M   G   DV TY+ +++GLCK   L +A+ L +EM ERGL P+    T LIDGHCK
Sbjct: 423 RNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCK 482

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G+++ A ++  +M    +  D +TY  LLDGF K GD+++A +I  +M+ + I
Sbjct: 483 ------LGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 536

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               ++F+ L++  C  G + EA R+  EM+   +KP       +I  +C++G+   G  
Sbjct: 537 LPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEI 596

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL--GVVPDDITYNILLEG 424
            L++M S+G +P   +YN L+ G  K   +  A  L+  M +   G+VPD  TYN +L G
Sbjct: 597 FLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHG 656

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            C+    ++ + +     E+G+  D + YTSL++
Sbjct: 657 FCRENQMKEAEAVLRKMIERGVNPDRSTYTSLIN 690



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 201/434 (46%), Gaps = 28/434 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL----------ET 52
           F   ++ Y+T+++ L  H  + +A+++   ++ + G+   ++ + S+L          ET
Sbjct: 291 FSPGVYTYNTVINGLCKHGKYERAKEVFAEML-RSGLSPDSTTYRSLLMEACKKGDAVET 349

Query: 53  RGTH--------LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
                       +P LV   ++M ++   G LD A+  F  +++            LI  
Sbjct: 350 ENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 409

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
             R  + +  +    E+L  G +  V  +N ++H LCK   + +A  +F+E  +RGL   
Sbjct: 410 YCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPD 469

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
           + +   LI+GHCK  NL     L   M+   ++ DV TY+ L++G  K   +D A+ +  
Sbjct: 470 SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWA 529

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           +M  + + P  + F+ L++  C  G       + EA ++ DEM +  + P  +    ++ 
Sbjct: 530 DMVSKEILPTPISFSILVNALCSKGH------LSEAFRVWDEMISKSIKPTVMICNSMIK 583

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM--LKVGL 341
           G+C+ G+        ++MI  G   D +++  LI GF +   + +A  ++++M   + GL
Sbjct: 584 GYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGL 643

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD  TY  ++  FC+    K    +L++M   G  P   TY +L+NG      L  A  
Sbjct: 644 VPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFR 703

Query: 402 LLDTMLDLGVVPDD 415
             D ML  G  PDD
Sbjct: 704 FHDEMLQRGFSPDD 717



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 130/270 (48%), Gaps = 16/270 (5%)

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---- 256
           + SA+I+ L +  RL DA+  +  M  R       I  +L+  +   G  D   D+    
Sbjct: 105 SLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDLLIRT 164

Query: 257 -KEARKIVDEMCTNGLNPDKITYTILLDG-------FCKEGDLESALDIRKEMIKRGIEL 308
             +ARK+ +      L   K  YT+ +D          + G +E A  I +E+ + G+ +
Sbjct: 165 FVQARKLREAYEAFTLLRSK-GYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGV 223

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +      +++  C+ GK+ +    L E+ + G+ PD  TY  +I  +   G  +  F L+
Sbjct: 224 NVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELM 283

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M S G  P V TYN ++NGLCKHG+ + A  +   ML  G+ PD  TY  LL   CK 
Sbjct: 284 HAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 343

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G+  + + + S+   + +V D  C++S++S
Sbjct: 344 GDAVETENIFSDMRSRDVVPDLVCFSSMMS 373


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 222/438 (50%), Gaps = 31/438 (7%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91
           +V K G+ S   +  S++ T G      LV D L+  YV    L +  + FR+L+     
Sbjct: 1   MVRKSGV-SRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLC 59

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           +    C  L+  +++     +    Y E++  G   +VY  N++++ LCK  KI++ +  
Sbjct: 60  VSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSF 119

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
             +  ++G+    V++NTLIN +C+   L+E F L   M G G++P V+TY+A+INGLCK
Sbjct: 120 LSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCK 179

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN------------------------ 247
             +   A+ +L EM + G++P+   +  L+   C+N                        
Sbjct: 180 TGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVS 239

Query: 248 -----GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
                G +   G + +A K   +M   GL PD + YTIL+ GFC+ G +  AL +R EM+
Sbjct: 240 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 299

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++G  LD V +  +++G C+   + EA+ +  EM + G+ PD  T+T +I+ + K+G+  
Sbjct: 300 EQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMN 359

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L + M      P V TYN L++G CK  +++  N L + M+   + P+ I+Y IL+
Sbjct: 360 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 419

Query: 423 EGHCKHGNPEDFDKLQSE 440
            G+C  G   +  +L  E
Sbjct: 420 NGYCNMGCVSEAFRLWDE 437



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 186/337 (55%), Gaps = 9/337 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L ++ ++ + G +P   ++ +L+   C+ G + +A  V DE  ++G     V++NT++N
Sbjct: 256 ALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILN 315

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK K L E   L + M   G+ PD YT++ LING  K+  ++ A  L   M +R L P
Sbjct: 316 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 375

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + TLIDG CK        +M++  ++ ++M +  + P+ I+Y IL++G+C  G + 
Sbjct: 376 DVVTYNTLIDGFCK------GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 429

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM+++G E   +    ++ G+CR G  V+A+  L  ML  G+ PD  TY  +I
Sbjct: 430 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI 489

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + F K  +    F L+ +M + G LP V TYN ++NG  + G+++ A +++  M++ GV 
Sbjct: 490 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN 549

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           PD  TY  L+ GH    N ++  ++  E   +G V D
Sbjct: 550 PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 248/500 (49%), Gaps = 48/500 (9%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P  +  L A+  +   L   +  ++ +++L  IV+   + S+     S +       P +
Sbjct: 58  PSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVERIVSSIGGEFNE-PSI 116

Query: 61  V---LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           V    D L  VY+D    D +++ F   RK  F I  R C   +  + R+    + + F 
Sbjct: 117 VEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFL 176

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            +++D G    V  +  ++  LCK+G++  A+ + DE   +G   + +++NTL+NG+ + 
Sbjct: 177 RQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEI 236

Query: 178 KN-----------------------------------LDEGFRLKSVMEGSGMRPDVYTY 202
           K+                                   ++E  +L   M   G+ PDVY Y
Sbjct: 237 KDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIY 296

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
           +++IN  CK   +  A +L  EM ER L PN   +  LI+G CK      AG+MK A  +
Sbjct: 297 TSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACK------AGEMKAAEMM 350

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
           V++M + G++ +++ +  L+DG+CK+G ++ AL ++  M ++G E+D      + SGFCR
Sbjct: 351 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 410

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
             +  EA+R+L  M + G+ P+  +++++ID +CK  +     RL K M   G  P+V T
Sbjct: 411 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVT 470

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK- 441
           YNA +   CK G+++ A  L++ M + G++PD  TY  L++G    GN +   +L +E  
Sbjct: 471 YNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMP 530

Query: 442 --GLVSDYACYTSLVSKSSK 459
             GL  +   YT ++S  SK
Sbjct: 531 QLGLNRNVVTYTVIISGLSK 550



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 181/339 (53%), Gaps = 13/339 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++DY    +V  + +L+    +  KI++A+ +FDE  K+G+      + ++IN +CK  N
Sbjct: 253 VVDY----NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGN 308

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +   F L   M    + P+ YTY ALING CK   +  AE+++++M  +G+  N VIF T
Sbjct: 309 MKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 368

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+DG+CK G ID      EA ++ + M   G   D  T  I+  GFC+    E A  +  
Sbjct: 369 LMDGYCKKGMID------EALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLL 422

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M +RG+  + V+F+ LI  +C+     EA R+ + M K G  P   TY   I+ +CK G
Sbjct: 423 TMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKG 482

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +  ++L+ EM+  G +P   TY +L++G    G +  A  L + M  LG+  + +TY 
Sbjct: 483 KMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYT 542

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           +++ G  K G  ++  KL  E   +G+V D   Y+SL++
Sbjct: 543 VIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIA 581



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 151/270 (55%), Gaps = 6/270 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ Y +  L++  CK G++K A+M+ ++   +G+    V FNTL++G+CK   +DE  RL
Sbjct: 326 PNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRL 385

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +++M+  G   D +T + + +G C+ NR ++A+ LL  M ERG+ PN V F+ LID +CK
Sbjct: 386 QNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCK 445

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                   +  EAR++   M   G  P  +TY   ++ +CK+G +E A  +  EM +RG+
Sbjct: 446 EQ------NFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGL 499

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T+LI G    G V  A  +  EM ++GL  +  TYT++I    K+G     F+
Sbjct: 500 MPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFK 559

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L  EM  +G +P    Y++L+  L K G L
Sbjct: 560 LYDEMNKEGIVPDDGIYSSLIASLHKVGPL 589



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G   +A +  + ++++G  +  ++ + LM  Y   G +D+A++   ++++  F I A 
Sbjct: 340 KAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAF 399

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
            C  +     R+N         L + + G +P+V  F++L+   CKE    +A+ +F   
Sbjct: 400 TCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVM 459

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            K+G   + V++N  I  +CK   ++E ++L + M+  G+ PD YTY++LI+G      +
Sbjct: 460 EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNV 519

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A  L +EM + GL  N V +T +I G  K+GR D      EA K+ DEM   G+ PD 
Sbjct: 520 DRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD------EAFKLYDEMNKEGIVPDD 573

Query: 276 ITYTILLDGFCKEGDLESALD 296
             Y+ L+    K G L S L+
Sbjct: 574 GIYSSLIASLHKVGPLVSGLE 594


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 237/498 (47%), Gaps = 34/498 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT-HLPG 59
           PH     H     +H L   K++  A++L   +            F  + +T    +   
Sbjct: 73  PHQFFNPHCKCIALHILTKFKLYKTAQNLAQDLAENSVDEKGNYFFQCLKDTYFMCNSSS 132

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV-TLGFYL 118
            V D ++     L F++ A+    L + + F         ++D ++R   P +     Y 
Sbjct: 133 AVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYR 192

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G S +V+ +N+L+   C  G ++     F+E  +       V++NT+I  +CK K
Sbjct: 193 EMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLK 252

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE F+L   M   G+ P++ TY+ +INGLC+  R+++   +L EM  +G  P+ V + 
Sbjct: 253 RIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYN 312

Query: 239 TLIDGHCKNGRIDM-----------------------------AGDMKEARKIVDEMCTN 269
           TL++G+CK G                                 AG++  A +  D+M   
Sbjct: 313 TLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVR 372

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P+ +TYT L++GF ++G ++ A  I  EMI+ G     V + AL++G C  G++ EA
Sbjct: 373 GLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEA 432

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +LR M   GL PD  +Y+ +I  FC+  +    F++  EM   G  P   TY++L+ G
Sbjct: 433 IGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQG 492

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LC+  +L  A  L   ML+  ++PD+ TY  L+ G+CK G+  +   L  E   KG + D
Sbjct: 493 LCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPD 552

Query: 447 YACYTSLVSKSSKYRQKR 464
              Y  L++  +K  + R
Sbjct: 553 TVTYNVLINGLNKQARTR 570



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 178/314 (56%), Gaps = 6/314 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  +N++++ LC+ G+I++   V  E  ++G     V++NTL+NG+CK  N  + 
Sbjct: 268 GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQA 327

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S M  +G+ PDV TY++LIN +CK   L+ A     +M  RGL PN V +T+LI+G
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLING 387

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G +D      EA +I DEM  +G  P  +TY  LL+G C  G +E A+ + + M  
Sbjct: 388 FSQKGFMD------EAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEG 441

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  D V+++ +I+GFCR  ++  A +M  EM++ G+ PD  TY+ +I   C+      
Sbjct: 442 KGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNE 501

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L +EM +   LP   TY +L+NG CK G L  A  L D M+  G +PD +TYN+L+ 
Sbjct: 502 ACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLIN 561

Query: 424 GHCKHGNPEDFDKL 437
           G  K     +  +L
Sbjct: 562 GLNKQARTREAKRL 575



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 186/391 (47%), Gaps = 56/391 (14%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ M +       + F+ ++   G  P+   +  L++   ++G + +A  ++DE  + G
Sbjct: 349 LINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSG 408

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              T V++N L+NGHC +  ++E   L   MEG G+ PDV +YS +I G C+   LD A 
Sbjct: 409 FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAF 468

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  EM E+G++P+ + +++LI G C+  R++ A D+        EM    L PD+ TYT
Sbjct: 469 QMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDL------FQEMLNKSLLPDEFTYT 522

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF-------------------------- 313
            L++G+CKEGDL  AL++  EMIK+G   D V +                          
Sbjct: 523 SLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYD 582

Query: 314 ------------------------TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
                                    ALI GFC  G + EA+++   M+K   KP++A Y 
Sbjct: 583 ESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYN 642

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I   C++G+     +L KEM   G +P   T  AL+  L   G  +  N+++  +L  
Sbjct: 643 VIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRS 702

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             + D      L++ + K GN +    L +E
Sbjct: 703 CKLSDAELSKALVQINHKEGNIDAVFNLLTE 733



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 181/429 (42%), Gaps = 91/429 (21%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  + A  F   +  RG    G+   +L+  +   GF+D+A           +RI   
Sbjct: 355 KAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEA-----------YRI--- 400

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
                 D M+R+                G+ P++  +N L++  C  G++++A  +    
Sbjct: 401 -----WDEMIRS----------------GFPPTIVTYNALLNGHCVSGRMEEAIGLLRGM 439

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +GL    VS++T+I G C+ + LD  F++ + M   G+ PD  TYS+LI GLC++ RL
Sbjct: 440 EGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRL 499

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           ++A  L  EM  + L P++  +T+LI+G+CK G      D+ EA  + DEM   G  PD 
Sbjct: 500 NEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG------DLNEALNLHDEMIKKGFLPDT 553

Query: 276 ITYTILLDG--------------------------------------------------F 285
           +TY +L++G                                                  F
Sbjct: 554 VTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGF 613

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C +G +  A  + + MIKR  + +   +  +I G CR G V +A ++ +EM+  G  P  
Sbjct: 614 CMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHT 673

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            T   ++      G  +    +++++     L   E   AL+    K G +     LL  
Sbjct: 674 VTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTE 733

Query: 406 MLDLGVVPD 414
           M   G +P 
Sbjct: 734 MAKDGFLPS 742


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 248/500 (49%), Gaps = 48/500 (9%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P  +  L A+  +   L   +  ++ +++L  IV+   + S+     S +       P +
Sbjct: 62  PSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVERIVSSIGGEFNE-PSI 120

Query: 61  V---LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           V    D L  VY+D    D +++ F   RK  F I  R C   +  + R+    + + F 
Sbjct: 121 VEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFL 180

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            +++D G    V  +  ++  LCK+G++  A+ + DE   +G   + +++NTL+NG+ + 
Sbjct: 181 RQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEI 240

Query: 178 KN-----------------------------------LDEGFRLKSVMEGSGMRPDVYTY 202
           K+                                   ++E  +L   M   G+ PDVY Y
Sbjct: 241 KDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIY 300

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
           +++IN  CK   +  A +L  EM ER L PN   +  LI+G CK      AG+MK A  +
Sbjct: 301 TSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACK------AGEMKAAEMM 354

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
           V++M + G++ +++ +  L+DG+CK+G ++ AL ++  M ++G E+D      + SGFCR
Sbjct: 355 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 414

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
             +  EA+R+L  M + G+ P+  +++++ID +CK  +     RL K M   G  P+V T
Sbjct: 415 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVT 474

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK- 441
           YNA +   CK G+++ A  L++ M + G++PD  TY  L++G    GN +   +L +E  
Sbjct: 475 YNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMP 534

Query: 442 --GLVSDYACYTSLVSKSSK 459
             GL  +   YT ++S  SK
Sbjct: 535 QLGLNRNVVTYTVIISGLSK 554



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 181/339 (53%), Gaps = 13/339 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++DY    +V  + +L+    +  KI++A+ +FDE  K+G+      + ++IN +CK  N
Sbjct: 257 VVDY----NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGN 312

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +   F L   M    + P+ YTY ALING CK   +  AE+++++M  +G+  N VIF T
Sbjct: 313 MKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 372

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+DG+CK G ID      EA ++ + M   G   D  T  I+  GFC+    E A  +  
Sbjct: 373 LMDGYCKKGMID------EALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLL 426

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M +RG+  + V+F+ LI  +C+     EA R+ + M K G  P   TY   I+ +CK G
Sbjct: 427 TMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKG 486

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +  ++L+ EM+  G +P   TY +L++G    G +  A  L + M  LG+  + +TY 
Sbjct: 487 KMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYT 546

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           +++ G  K G  ++  KL  E   +G+V D   Y+SL++
Sbjct: 547 VIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIA 585



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 151/270 (55%), Gaps = 6/270 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ Y +  L++  CK G++K A+M+ ++   +G+    V FNTL++G+CK   +DE  RL
Sbjct: 330 PNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRL 389

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +++M+  G   D +T + + +G C+ NR ++A+ LL  M ERG+ PN V F+ LID +CK
Sbjct: 390 QNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCK 449

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                   +  EAR++   M   G  P  +TY   ++ +CK+G +E A  +  EM +RG+
Sbjct: 450 EQ------NFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGL 503

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T+LI G    G V  A  +  EM ++GL  +  TYT++I    K+G     F+
Sbjct: 504 MPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFK 563

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L  EM  +G +P    Y++L+  L K G L
Sbjct: 564 LYDEMNKEGIVPDDGIYSSLIASLHKVGPL 593



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G   +A +  + ++++G  +  ++ + LM  Y   G +D+A++   ++++  F I A 
Sbjct: 344 KAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAF 403

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
            C  +     R+N         L + + G +P+V  F++L+   CKE    +A+ +F   
Sbjct: 404 TCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVM 463

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            K+G   + V++N  I  +CK   ++E ++L + M+  G+ PD YTY++LI+G      +
Sbjct: 464 EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNV 523

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A  L +EM + GL  N V +T +I G  K+GR D      EA K+ DEM   G+ PD 
Sbjct: 524 DRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD------EAFKLYDEMNKEGIVPDD 577

Query: 276 ITYTILLDGFCKEGDLESALD 296
             Y+ L+    K G L S L+
Sbjct: 578 GIYSSLIASLHKVGPLVSGLE 598


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 209/395 (52%), Gaps = 25/395 (6%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL+   V++G+  D +    L+   +    A     LIDRM+                  
Sbjct: 172 ALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVAR---------------- 215

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P ++ +  +++ LCK G I  A  +  +  K  + A  V +NT+I+G CK K++D+ 
Sbjct: 216 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDA 275

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L + ME  G++PDV+TY++LI+ LC   R  DA  LL +M ER + PN V F +LID 
Sbjct: 276 FDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDA 335

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++P+ +TY  L++GFC    L+ A  I   M+ 
Sbjct: 336 FAKEGK------LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 389

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    D V +  LI GFC+  +V E   + REM + GL  +  TY  +I    + GD   
Sbjct: 390 KDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 449

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ K+M SDG  P + TY+ L++GLCK+G+L+ A ++ + +    + P+  TYNI++E
Sbjct: 450 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIE 509

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  +   YT+++S
Sbjct: 510 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 544



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/440 (29%), Positives = 211/440 (47%), Gaps = 40/440 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV------- 61
            ++T++H L  H   S+A  L+  +V++   G    LF     T GT + GL        
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVAR---GCQPDLF-----TYGTVVNGLCKRGDIDL 239

Query: 62  ------------LDALMIVYVDL-------GFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
                       ++A +++Y  +         +DDA   F  +     +        LI 
Sbjct: 240 ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
            +      +       ++++   +P+V  FN L+    KEGK+ +A+ +FDE  +R +  
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 359

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             V++N+LING C    LDE  ++ ++M      PDV TY+ LI G CK  R+++   L 
Sbjct: 360 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELF 419

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            EM +RGL  N V + TLI G  + G  DMA      +KI  +M ++G+ PD ITY+ILL
Sbjct: 420 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMA------QKIFKKMVSDGVPPDIITYSILL 473

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK G LE AL + + + K  +E +   +  +I G C+ GKV +   +   +   G+K
Sbjct: 474 DGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+   YT +I  FC+ G  +    L +EM+ DG LP    YN L+    + G    +  L
Sbjct: 534 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAEL 593

Query: 403 LDTMLDLGVVPDDITYNILL 422
           +  M   G V D  T ++++
Sbjct: 594 IKEMRSCGFVGDASTISMVI 613



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 191/400 (47%), Gaps = 39/400 (9%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L + +Q   +   HY       C C      R+ LP + L    +++  GY P +   + 
Sbjct: 103 LGEQMQNLGIPHNHYTYSILLNCFC-----RRSQLP-LALAVLGKMMKLGYEPDIVTLSS 156

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++  C   +I +A  + D+  + G     V+FNTLI+G        E   L   M   G
Sbjct: 157 LLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARG 216

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            +PD++TY  ++NGLCK   +D A  LL +M +  +  N VI+ T+IDG CK   +D A 
Sbjct: 217 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAF 276

Query: 255 DM-----------------------------KEARKIVDEMCTNGLNPDKITYTILLDGF 285
           D+                              +A +++ +M    +NP+ +T+  L+D F
Sbjct: 277 DLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAF 336

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            KEG L  A  +  EMI+R I+ + V + +LI+GFC   ++ EA+++   M+     PD 
Sbjct: 337 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDV 396

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +I  FCK    + G  L +EM   G +    TYN L+ GL + G    A  +   
Sbjct: 397 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 456

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           M+  GV PD ITY+ILL+G CK+G  E     F+ LQ  K
Sbjct: 457 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 496



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 194/385 (50%), Gaps = 11/385 (2%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LDDA+  F  +++   F       + L+  + + N   V +    ++ + G   + Y ++
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSK-LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++  C+  ++  A  V  +  K G     V+ ++L+NG+C  K + E   L   M   
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G +PD  T++ LI+GL   N+  +A  L+  M  RG  P+   + T+++G CK G ID+ 
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL- 239

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
                A  ++ +M    +  + + Y  ++DG CK   ++ A D+  +M  +GI+ D   +
Sbjct: 240 -----ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 294

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            +LIS  C  G+  +A R+L +M++  + P+  T+  +ID F K G      +L  EM  
Sbjct: 295 NSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 354

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P + TYN+L+NG C H +L  A  +   M+    +PD +TYN L++G CK    E+
Sbjct: 355 RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEE 414

Query: 434 FDKL---QSEKGLVSDYACYTSLVS 455
             +L    S++GLV +   Y +L+ 
Sbjct: 415 GMELFREMSQRGLVGNTVTYNTLIQ 439



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 159/317 (50%), Gaps = 9/317 (2%)

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
           E K+ DA  +F E  K     + + F+ L++   K    D    L   M+  G+  + YT
Sbjct: 59  ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 118

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           YS L+N  C+ ++L  A  +L +M + G  P+ V  ++L++G+C   RI       EA  
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRIS------EAVA 172

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           +VD+M   G  PD +T+  L+ G         A+ +   M+ RG + D   +  +++G C
Sbjct: 173 LVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLC 232

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + G +  A  +L++M K  ++ +   Y  +ID  CK       F L  +M + G  P V 
Sbjct: 233 KRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVF 292

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE- 440
           TYN+L++ LC +G+  +A+ LL  M++  + P+ +T+N L++   K G   + +KL  E 
Sbjct: 293 TYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 352

Query: 441 --KGLVSDYACYTSLVS 455
             + +  +   Y SL++
Sbjct: 353 IQRSIDPNIVTYNSLIN 369



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG  + K LD+   L   M  S   P +  +S L++ + K N+ D    L  +M   G+ 
Sbjct: 55  NGLSELK-LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 113

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
            N   ++ L++  C+  ++ +A        ++ +M   G  PD +T + LL+G+C    +
Sbjct: 114 HNHYTYSILLNCFCRRSQLPLA------LAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRI 167

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A+ +  +M++ G + D V F  LI G     K  EA  ++  M+  G +PD  TY  V
Sbjct: 168 SEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTV 227

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  CK GD      LLK+M        V  YN +++GLCK+  + +A  L + M   G+
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGI 287

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
            PD  TYN L+   C +G   D  +L S   E+ +  +   + SL+   +K
Sbjct: 288 KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAK 338


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 238/470 (50%), Gaps = 24/470 (5%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------- 51
           P F+ + +A+  ++  LV + +   A  ++  I+S +  G    L    L          
Sbjct: 133 PGFKTSEYAFCAILQILVDNCLMKSAYWVMERIISFEMYGIVDVLIGGYLNYQCLLVFEK 192

Query: 52  -TRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
             R   LP +   + ++ +  D   L  A++ +R++ ++  R        ++    +   
Sbjct: 193 MMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGE 252

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
               L    ++ + G  PS   FNVL++ L K+G+++ A+ +  E  K GL  +  ++N 
Sbjct: 253 VQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNP 312

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI G+CK   L E   L   M   G+ P V +++ ++ G CKE ++ DA   L +M ++ 
Sbjct: 313 LICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKN 372

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P+ + + TLI G C+       G++ EA  ++DE+    L+ + +TY  L+DG C+ G
Sbjct: 373 LMPDIISYNTLIYGFCR------LGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLG 426

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           DLE+AL ++++MI RGI  D V +T L++G C+ G ++ A+    EML VGL PD   YT
Sbjct: 427 DLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYT 486

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
             I    K GDT   F+L +EM + G  P V TYN  +NGLCK G L+ A  LL  M+  
Sbjct: 487 ARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRD 546

Query: 410 GVVPDDITYNILLEGHCKHGNPED-----FDKLQSEKGLVSDYACYTSLV 454
           G VPD +TY   +  H ++G+  +     +D L   +G       YT L+
Sbjct: 547 GHVPDHVTYTSFMHAHMENGHLREGREIFYDML--SRGQTPTVVTYTVLI 594



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 223/488 (45%), Gaps = 49/488 (10%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           R T+  Y+TM+H         +A DL    V K             ++ RG +   +  +
Sbjct: 234 RPTVTTYNTMLHSFCKGGEVQRALDL----VPK-------------MQERGCYPSEVTFN 276

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            L+      G L  A    + + K   R+       LI    +  L    L  + E++  
Sbjct: 277 VLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTR 336

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP+V   N +M+  CKEGK+ DA+    +  K+ L    +S+NTLI G C+  N+ E 
Sbjct: 337 GVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEA 396

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L   +    +  ++ TY+ LI+GLC+   L+ A  L  +M  RG+ P+ V +T L++G
Sbjct: 397 FILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNG 456

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            CK G + MA                             GD  +A K+ +EM T G  PD
Sbjct: 457 ACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPD 516

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ITY + ++G CK G+LE A ++ ++MI+ G   D+V +T+ +      G + E   +  
Sbjct: 517 VITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFY 576

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +ML  G  P   TYT++I     NG          EM+  G +P V TYN L+NG CK  
Sbjct: 577 DMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVR 636

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           ++  A      M + G+ P+  TY IL+  +C  G  ++  +L ++   K +  D   + 
Sbjct: 637 KMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHG 696

Query: 452 SLVSKSSK 459
           +L+ K  K
Sbjct: 697 ALLKKLDK 704



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 154/309 (49%), Gaps = 6/309 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + R       L    ++++ G  P V  + VL++  CK G +  A+  FDE    G
Sbjct: 418 LIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVG 477

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     ++   I G  K  +  + F+L+  M   G  PDV TY+  +NGLCK   L++A 
Sbjct: 478 LAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAG 537

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   G  P+ V +T+ +  H +NG       ++E R+I  +M + G  P  +TYT
Sbjct: 538 ELLQKMIRDGHVPDHVTYTSFMHAHMENGH------LREGREIFYDMLSRGQTPTVVTYT 591

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +L+      G L+ A+    EM ++G+  + + +  LI+GFC+  K+ +A +   EM + 
Sbjct: 592 VLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEK 651

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ P+  TYT++I+  C  G  +   RL  +M      P   T+ AL+  L K  +++  
Sbjct: 652 GIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQAV 711

Query: 400 NMLLDTMLD 408
             +   +LD
Sbjct: 712 QFIESLILD 720


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 217/425 (51%), Gaps = 30/425 (7%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           + S+ G+   A L    +  RG     +    ++++Y  +G + +A +   ++ +  F +
Sbjct: 179 VTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVV 238

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
                  +I R       T  L ++  ++D G  P++  F  ++  LCK G IK A  + 
Sbjct: 239 DNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEML 298

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCK 211
           +E   +G      +  +LI+G CK    ++ FRL   ++     +P+V TY+A+I+G C+
Sbjct: 299 EEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCR 358

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------ 253
           E++L+ AE+LL  M E+GL PN   +TTLIDGHCK G  + A                  
Sbjct: 359 EDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCT 418

Query: 254 -----------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
                      G ++EA K++++   NGL PDK TY IL+   CK+ ++  AL +  +M+
Sbjct: 419 YNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKML 478

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           K GI+ D  ++T LI+ FCR  ++ E+E    E +++G+ P + TYT +I  +C+ G+  
Sbjct: 479 KIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLT 538

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +    +   G  P   TY A+++GLCK  +   A  L D+M++ G+VP ++T   L 
Sbjct: 539 LAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLA 598

Query: 423 EGHCK 427
             +CK
Sbjct: 599 YEYCK 603



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 194/363 (53%), Gaps = 12/363 (3%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           RC+++           +   +E+ + G  P+    N ++    + G ++ A+++F+E   
Sbjct: 139 RCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCV 198

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           RG+   ++S+  ++  +CK  N+ E  +  SVM   G   D  T++ +I+    +     
Sbjct: 199 RGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTR 258

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A      + + GL PN + FT +I+G CK G I      K+A ++++EM   G  P+  T
Sbjct: 259 ALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSI------KQAFEMLEEMVGKGWKPNVYT 312

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREM 336
           +T L+DG CK+G  E A  +  ++++      NV  +TA+ISG+CR  K+  AE +L  M
Sbjct: 313 HTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRM 372

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + GL P+  TYT +ID  CK G+ +  + L+  M S+G  P + TYNA++NGLCK G++
Sbjct: 373 KEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRV 432

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTS 452
           + A  +L+     G+ PD  TYNIL+  HCK  N       F+K+  + G+  D   YT+
Sbjct: 433 QEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKML-KIGIQPDIHSYTT 491

Query: 453 LVS 455
           L++
Sbjct: 492 LIA 494



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 176/352 (50%), Gaps = 13/352 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G+      F +++ +   +G    A   F      GL    ++F  +I G CK  +
Sbjct: 231 MLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGS 290

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFT 238
           + + F +   M G G +P+VYT+++LI+GLCK+   + A  L L  +      PN + +T
Sbjct: 291 IKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYT 350

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I G+C+  +++       A  ++  M   GL P+  TYT L+DG CK G+ E A D+ 
Sbjct: 351 AMISGYCREDKLN------RAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLM 404

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M   G   +   + A+++G C+ G+V EA +ML +  + GLKPD  TY +++   CK 
Sbjct: 405 NLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQ 464

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            + +    L  +M   G  P + +Y  L+   C+  ++K + M  +  + +G++P + TY
Sbjct: 465 ENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTY 524

Query: 419 NILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVS---KSSKYRQKR 464
             ++ G+C+ GN      F    S+ G   D   Y +++S   K SK  + R
Sbjct: 525 TSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEAR 576


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 186/331 (56%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ Y   ++++ LC+ G I+DA  VF+     G+   AV + TLI GH +     E  R+
Sbjct: 444 PTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRI 503

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             VM+  G++PDV  Y+++I GLCK  ++++A+  L EM ERGL PN   +  LI G+CK
Sbjct: 504 LKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCK 563

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 +G+M+ A +   EM   G+ P+ +  T L+DG+CKEG    A  I + M+ R +
Sbjct: 564 ------SGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV 617

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   ++ALI G  R GK+  A  +L E L+ GL PD  TY  +I  FCK G     F+
Sbjct: 618 HPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ 677

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L + M   G  P + TYNAL+NGLCK G+++ A  L D +   G+  + +TY  +++G+C
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYC 737

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K GN     +L  E   KG+  D   Y++L+
Sbjct: 738 KSGNLSKAFRLFDEMTLKGVPPDSFVYSALI 768



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 231/469 (49%), Gaps = 28/469 (5%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLH---------------LIVS---KKGMGSSASLFASI 49
             Y+ M+   +  +  S+ +DLL                +I++   + G    AS    I
Sbjct: 412 QTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEI 471

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           + + G     ++   L+  +V  G   +A++  +++ K   +        +I  + ++  
Sbjct: 472 MVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRK 531

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                 + +E+++ G  P+VY +  L+H  CK G+++ A   F E    G+    V    
Sbjct: 532 MEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTA 591

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI+G+CK  +  E   +   M G  + PDV TYSALI+GL +  +L  A  LL E  E+G
Sbjct: 592 LIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKG 651

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P+   + ++I G CK G I  A  + E       MC  G++P+ ITY  L++G CK G
Sbjct: 652 LVPDVFTYNSIISGFCKQGGIGKAFQLHEY------MCQKGISPNIITYNALINGLCKAG 705

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           ++E A ++   +  +G+  + V +  +I G+C+ G + +A R+  EM   G+ PD   Y+
Sbjct: 706 EIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYS 765

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +ID   K G+T+    L  E    G   +  + NALM+G CK G++  AN LL+ M+D 
Sbjct: 766 ALIDGCRKEGNTEKALSLFLESVQKG-FASTSSLNALMDGFCKSGKVIEANQLLEDMVDK 824

Query: 410 GVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
            V PD +TY IL++ HCK G     E F     ++ L+ +   YT+L+S
Sbjct: 825 HVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLS 873



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 184/334 (55%), Gaps = 7/334 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  LID   +    T     +  +L     P V  ++ L+H L + GK++ A  +  EF 
Sbjct: 589 CTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFL 648

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           ++GL     ++N++I+G CK   + + F+L   M   G+ P++ TY+ALINGLCK   ++
Sbjct: 649 EKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIE 708

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L   +  +GL  N V + T+IDG+CK      +G++ +A ++ DEM   G+ PD  
Sbjct: 709 RARELFDGIPGKGLAHNAVTYATIIDGYCK------SGNLSKAFRLFDEMTLKGVPPDSF 762

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y+ L+DG  KEG+ E AL +  E +++G      +  AL+ GFC+ GKV+EA ++L +M
Sbjct: 763 VYSALIDGCRKEGNTEKALSLFLESVQKGFA-STSSLNALMDGFCKSGKVIEANQLLEDM 821

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +   +KPD  TYT++ID  CK G  K   +   +M+    +P   TY AL++G    G+ 
Sbjct: 822 VDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRR 881

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
                L D M+   + PD +T++++++ H K G+
Sbjct: 882 SEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGD 915



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 228/486 (46%), Gaps = 54/486 (11%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP---- 58
           F   L ++S +   L   ++ S+A  +++ ++     G S  L + I   +   L     
Sbjct: 97  FSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDSLIKSCKEFDLNNVNG 156

Query: 59  ---------GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
                    G+V + L+  Y   G  D+A+  F   +++ F +    C  L+  +++ N 
Sbjct: 157 NENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANK 216

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             +   FY  +L+      VY +  L++   + G  K+ + +  E  ++G   + V++N 
Sbjct: 217 LELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNV 276

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I G C+A  +DE F LK +M+  G+  DV+TYS LI+G  K+ R  +A+L+L EM  +G
Sbjct: 277 VIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKG 336

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P  V +T LIDG  +       GD  EA ++ +EM   G+  +  TY  L+ G CK G
Sbjct: 337 LKPGHVAYTALIDGFMRQ------GDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFG 390

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGF----------------------------- 320
           D+E A  +  EMI  GI+ D   +  +I G+                             
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCG 450

Query: 321 ------CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
                 CR G + +A R+   M+ +G+KP+   YT +I    + G  +   R+LK M   
Sbjct: 451 MIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKK 510

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P V  YN+++ GLCK  +++ A   L  M++ G+ P+  TY  L+ G+CK G  +  
Sbjct: 511 GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVA 570

Query: 435 DKLQSE 440
           D+   E
Sbjct: 571 DRYFKE 576



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 160/288 (55%), Gaps = 7/288 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP++  +N L++ LCK G+I+ A+ +FD    +GL   AV++ T+I+G+CK+ NL + 
Sbjct: 686 GISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKA 745

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL   M   G+ PD + YSALI+G  KE   + A  L  E  ++G      +   L+DG
Sbjct: 746 FRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSL-NALMDG 804

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+G++       EA +++++M    + PD +TYTIL+D  CK G L+ A     +M K
Sbjct: 805 FCKSGKV------IEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQK 858

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R +  + + +TAL+SG+   G+  E   +  EM+   ++PD  T++++ID   K GD   
Sbjct: 859 RNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVK 918

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
             +L+ +M   G   +    + L++ LC+   +     +L+ + + G+
Sbjct: 919 TLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGL 966



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 163/366 (44%), Gaps = 30/366 (8%)

Query: 9    AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
             Y+ +++ L       +AR+L   I   KG+  +A  +A+I++                 
Sbjct: 693  TYNALINGLCKAGEIERARELFDGI-PGKGLAHNAVTYATIIDG---------------- 735

Query: 69   YVDLGFLDDAIQCFRLLRKHYFR-IPARGC--RCLIDRMMRTNLPTVTLGFYLEILDYGY 125
            Y   G L  A   FRL  +   + +P        LID   +       L  +LE +  G+
Sbjct: 736  YCKSGNLSKA---FRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF 792

Query: 126  SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            + S    N LM   CK GK+ +A  + ++   + +    V++  LI+ HCK   L E  +
Sbjct: 793  A-STSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQ 851

Query: 186  LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
                M+   + P+  TY+AL++G     R  +   L  EM  + + P+ V ++ +ID H 
Sbjct: 852  FFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHL 911

Query: 246  KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            K G      D  +  K+VD+M   G N  K    +L+D  C++  +   L + +++ ++G
Sbjct: 912  KEG------DHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQG 965

Query: 306  IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            + L     + L+  F + GK+  A R+L+ M++    PD      +I+    + D++   
Sbjct: 966  LNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAG 1025

Query: 366  RLLKEM 371
              LK+M
Sbjct: 1026 DFLKQM 1031


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 149/478 (31%), Positives = 232/478 (48%), Gaps = 41/478 (8%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRG--THLPGLVLDA 64
           H Y    H LV  +M+  A+ +L HL   + G+GS  S+F ++++T      +P  V D 
Sbjct: 113 HMYCLTAHILVKARMYDSAKSILRHL--CQMGIGSK-SIFGALMDTYPLCNSIPS-VFDL 168

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+ VY+  G +D A++ F L+    F+     C  ++  M++     +    + E+ D G
Sbjct: 169 LIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKG 228

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+V  FN+L++ LC EG +K A  +  +  + G   T V++NTL+N +CK        
Sbjct: 229 ICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAI 288

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M   G+  DV TY+  I+ LC  +R   A LLL +M +  ++PN+V + TLI+G 
Sbjct: 289 ELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGF 348

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+I +A       ++ +EM    L+P+ +TY  L+ G C  GD E AL +   M   
Sbjct: 349 VKEGKIGVAA------QVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 402

Query: 305 GIEL-----------------------DNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           G+ L                       D+     L+S  CR GK+ EAE+ L  M ++GL
Sbjct: 403 GLRLNEHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGL 462

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P+  TY  +I+ +   GD    F    +M   G  P+  TY +L+ GLCK G L  A  
Sbjct: 463 VPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKK 522

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
            L+ +  +    D + YN LL   CK GN  +    FDK+     L   Y  Y+SL++
Sbjct: 523 FLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYT-YSSLLT 579



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 148/326 (45%), Gaps = 18/326 (5%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CL+D + +   P     F+ E++  G  P    FN ++    + G++  A   F      
Sbjct: 612 CLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWW 671

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN----- 213
           G+     ++N L++G  K + L     L S M   G+ PD  T+ +LI GL K       
Sbjct: 672 GVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLG 731

Query: 214 -------RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
                   ++++ ++LHEM E G+ P    + TLI+G C+       GD++ A K+ DEM
Sbjct: 732 VKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCR------VGDIQGAFKLKDEM 785

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G    ++  + ++ G    G  E A+ +   M++  +      FT L+  FCR  K+
Sbjct: 786 EALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKI 845

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA ++   M   GLK D   Y ++I   C NGD+   F L +EMR     P + TY  L
Sbjct: 846 AEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVL 905

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVV 412
           ++ +     L     LL  + + G++
Sbjct: 906 VDAISAANNLIQGEKLLTDLQERGLI 931



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 9/328 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+  ++  L+  L K G  K A   F+E  K+G     V+FN +I+   +   + +    
Sbjct: 605 PNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDF 664

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            S M   G+ P++ TY+ L++G  K+  L     L   M   G+ P+ + F +LI G  K
Sbjct: 665 FSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSK 724

Query: 247 NGRIDMAGD------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           +G  D+         M+E+  ++ EM  NG+ P    Y  L++G C+ GD++ A  ++ E
Sbjct: 725 SGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDE 784

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G     VA +A++ G    GK  +A  +L  ML++ L P  AT+T ++  FC++  
Sbjct: 785 MEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAK 844

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                +L   M   G    V  YN L+ G+C +G    A  L + M    + P+  TY +
Sbjct: 845 IAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAV 904

Query: 421 LLEGHCKHGNPEDFDKLQS---EKGLVS 445
           L++      N    +KL +   E+GL+S
Sbjct: 905 LVDAISAANNLIQGEKLLTDLQERGLIS 932



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 54/365 (14%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+    +  NVL+  LC++GK+ +A+       + GL   +++++ +ING+    +    
Sbjct: 426 GHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNA 485

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F     M   G  P  +TY +L+ GLCK   L +A+  L+ +       + V++ TL+  
Sbjct: 486 FSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAE 545

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY------------------------- 278
            CK      +G++ EA  + D+M  N + PD  TY                         
Sbjct: 546 TCK------SGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMG 599

Query: 279 -----------TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
                      T L+DG  K G  ++A    +EM+K+G   D VAF A+I    R G+++
Sbjct: 600 RGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 659

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A      M   G+ P+ ATY +++  F K         L   M  +G  P   T+++L+
Sbjct: 660 KANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLI 719

Query: 388 NGLCKHG------------QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
            GL K G             ++ + ++L  ML+ GV+P    Y  L+ G C+ G+ +   
Sbjct: 720 LGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAF 779

Query: 436 KLQSE 440
           KL+ E
Sbjct: 780 KLKDE 784


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 225/463 (48%), Gaps = 34/463 (7%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83
           S+ + LL L +S++   S   + +S+L +  T  P  V D L+  Y       +A + FR
Sbjct: 54  SECQSLL-LRMSRRRGASRREIVSSLLASSPTPQPQ-VFDLLIRTYTQSRKPREAFEAFR 111

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           LL  H   +PA     L+  + R   P +    Y  +L      + Y  N+++H  CK  
Sbjct: 112 LLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTL 171

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +   A  V  E  KR +    V+ N LI+   +A ++D    L   M   G++P + TY+
Sbjct: 172 EFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYN 231

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
           +++ GLCK  R D A+ +   M +  + P+   F  LI G C+ G +  A          
Sbjct: 232 SVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHR 291

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              G+M  A   + EM   GL PD + YT+++ GFC+ G +  A
Sbjct: 292 YVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L +R EM+  G   D V +  L++G C+  ++++AE++L EM + G+ PD  T+T +I  
Sbjct: 352 LRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHG 411

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +C+ G+ +   +L   +      P V TYN+L++G+C+ G L  AN L D M    ++P+
Sbjct: 412 YCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPN 471

Query: 415 DITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
            ITY+IL++ HC+ G  ED   F     +KG + +   Y S++
Sbjct: 472 HITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514



 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 202/384 (52%), Gaps = 9/384 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
            D A + FR + +       R    LI    R       + FY E+     +P V  F+ 
Sbjct: 243 FDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSC 302

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+    + G++  A     E    GL    V +  +I G C+A ++ E  R++  M G G
Sbjct: 303 LIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFG 362

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TY+ L+NGLCK++RL DAE LL+EM ERG+TP+   FTTLI G+C+ G      
Sbjct: 363 CLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQG------ 416

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           + + A ++ D +    L PD +TY  L+DG C++GDL  A ++  +M  R I  +++ ++
Sbjct: 417 NFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYS 476

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI   C  G+V +A   L EM+K G  P+  TY  +I  +C++G+ K G + L++MR D
Sbjct: 477 ILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQD 536

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              P + T+N L++G  K   +  A  + + M    V PD +TYN+++ G  + GN +D 
Sbjct: 537 NVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDA 596

Query: 435 DKL---QSEKGLVSDYACYTSLVS 455
            ++     + G+  D   Y SL++
Sbjct: 597 GRVFKGMGDSGIEPDRYTYMSLIN 620


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  224 bits (570), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 222/433 (51%), Gaps = 34/433 (7%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           LV D L+  Y      D+A++C  L++++        C  L+  +++ N   +    Y E
Sbjct: 148 LVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEE 207

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++      S+  FN++++ LC+EGK K A+         G+    V++NT+ING+C    
Sbjct: 208 MVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGK 267

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            +   ++   M+   ++PD YTY++ I+ LCKE R+++A  +L ++ E GL PN V +  
Sbjct: 268 FEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LIDG C  G +D A                               ++EA  ++ EM   G
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD +TY I ++G+C+ G+ + AL +  EM+++ I      +T+LI  F +  ++ EAE
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAE 447

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
              ++ +K G+ PD   +  +ID  C NG+    F+LLKEM +   +P   T+N LM G 
Sbjct: 448 EKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGY 507

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           C+  +++ A  LLD M + G+ PD I+YN L+ G+ K G+ +D    FD++ S  G    
Sbjct: 508 CRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLS-LGFDPT 566

Query: 447 YACYTSLVSKSSK 459
              Y +L+   SK
Sbjct: 567 LLTYNALIQGYSK 579



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 185/392 (47%), Gaps = 6/392 (1%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           I+ ++G    A  F   +E  G     +  + ++  Y   G  + A + F+ ++    + 
Sbjct: 226 ILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKP 285

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
                   I R+ +        G   ++L+ G  P+   +N L+   C +G +  A    
Sbjct: 286 DCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYR 345

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           DE   RG+ A+  ++N LI+     K ++E   +   M   G+ PDV TY+  ING C+ 
Sbjct: 346 DEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRC 405

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
                A  L  EM E+ + P    +T+LID   K  R      M EA +   +    G+ 
Sbjct: 406 GNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNR------MSEAEEKFKKSIKEGML 459

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD I +  L+DG C  G+++ A  + KEM    +  D V F  L+ G+CR  KV EA+++
Sbjct: 460 PDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKL 519

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EM + G+KPD  +Y  +I  + K GD K    +  EM S G  P + TYNAL+ G  K
Sbjct: 520 LDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSK 579

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            G+  +A  LL  M   G+ PDD TY  ++E 
Sbjct: 580 IGEADHAEELLREMQSKGITPDDSTYLYVIEA 611



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 146/271 (53%), Gaps = 29/271 (10%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G   SV+ +N+L+H L  E +I++A+ +  E  ++G+    V++N  ING+C+  
Sbjct: 347 EMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCG 406

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N  +   L   M    +RP V TY++LI+   K NR+ +AE    +  + G+ P+ ++F 
Sbjct: 407 NAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFN 466

Query: 239 TLIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTN 269
            LIDGHC NG ID A  +                             +EA+K++DEM   
Sbjct: 467 ALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKER 526

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ PD I+Y  L+ G+ K GD++ AL++  EM+  G +   + + ALI G+ + G+   A
Sbjct: 527 GIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHA 586

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           E +LREM   G+ PDD+TY  VI+    N D
Sbjct: 587 EELLREMQSKGITPDDSTYLYVIEAMKTNDD 617



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 186/438 (42%), Gaps = 112/438 (25%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFG---KRGLHATAVSFNTLINGHCKAKNLDEG 183
           PS ++   ++H            ++F+E      R    T + F+ L++ +C+ +  DE 
Sbjct: 114 PSFHILQPILH-------TTTPTVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEA 166

Query: 184 FRLKSVMEGSGMRP-----------------------------------DVYTYSALING 208
               ++M+ + + P                                    + T++ +IN 
Sbjct: 167 LECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINI 226

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD------------- 255
           LC+E +   A+  +  M   G+ PN V + T+I+G+C  G+ + A               
Sbjct: 227 LCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPD 286

Query: 256 ----------------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                           ++EA  ++ ++  +GL P+ +TY  L+DG C +GDL+ A   R 
Sbjct: 287 CYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRD 346

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ RGI      +  LI       ++ EAE M++EM + G++PD  TY + I+ +C+ G
Sbjct: 347 EMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCG 406

Query: 360 DTKTGFRLLKEMRSDGHLPAVETY-----------------------------------N 384
           + K    L  EM      P VETY                                   N
Sbjct: 407 NAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFN 466

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEK 441
           AL++G C +G +  A  LL  M +  VVPD++T+N L++G+C+    E+  KL     E+
Sbjct: 467 ALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKER 526

Query: 442 GLVSDYACYTSLVSKSSK 459
           G+  D+  Y +L+S  SK
Sbjct: 527 GIKPDHISYNTLISGYSK 544



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 120/215 (55%), Gaps = 6/215 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + E+++    P+V  +  L+    K  ++ +A+  F +  K G+    + FN LI+G
Sbjct: 412 LSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDG 471

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           HC   N+D  F+L   M+ + + PD  T++ L+ G C+E ++++A+ LL EM ERG+ P+
Sbjct: 472 HCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPD 531

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + + TLI G+ K G      DMK+A ++ DEM + G +P  +TY  L+ G+ K G+ + 
Sbjct: 532 HISYNTLISGYSKRG------DMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADH 585

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           A ++ +EM  +GI  D+  +  +I        +VE
Sbjct: 586 AEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVE 620


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  224 bits (570), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 137/402 (34%), Positives = 210/402 (52%), Gaps = 10/402 (2%)

Query: 58  PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           PGLV  ++++   +  G  D A + FR +         R    LI    R       L F
Sbjct: 227 PGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRF 286

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+     +P V  F+ L+    + G++  A     E  + GL    V +  +I G C+
Sbjct: 287 YKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCR 346

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A  + E  R++  M   G  PDV TY+ L+NGLCKE RL DAE LL+EM ERG+ P+   
Sbjct: 347 AGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCT 406

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           FTTLI G+C++G I+      +A +  D +    L PD +TY  L+DG C++GDL  A +
Sbjct: 407 FTTLIHGYCRDGNIE------KALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANE 460

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +M  R I  ++V ++ LI   C  G+V  A   L EM+  G+ P+  TY  +I  +C
Sbjct: 461 LWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYC 520

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           ++G+   G + L +MR D  +P + TYN L++G  K G++  A  LL  M +  V PD +
Sbjct: 521 RSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAV 580

Query: 417 TYNILLEGHCKHGNPEDFD---KLQSEKGLVSDYACYTSLVS 455
           TYN+++ G   HGN ++ D   K    +G+  D   Y S+++
Sbjct: 581 TYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMIN 622



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 184/359 (51%), Gaps = 11/359 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D   R       +     ++  G  P +  +N ++  L + G+   A+ VF      G
Sbjct: 200 MVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACG 259

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     SFN LI G C+A  L+E  R    M G  + PDV ++S LI    +   +D A 
Sbjct: 260 VAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAA 319

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             L EM E GL P+ VI+T +I G C+      AG M EA ++ DEM   G  PD +TY 
Sbjct: 320 EYLREMREFGLMPDGVIYTMVIGGFCR------AGLMLEALRVRDEMVAFGCLPDVVTYN 373

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            LL+G CKE  L  A ++  EM +RG+  D   FT LI G+CR G + +A +    +   
Sbjct: 374 TLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQ 433

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L+PD  TY  +ID  C+ GD      L  +M S    P   TY+ L++  C+ GQ+ NA
Sbjct: 434 RLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNA 493

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLV 454
              LD M++ G+VP+ +TYN +++G+C+ GN     +   K++ +K ++ D   Y +L+
Sbjct: 494 FAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDK-VMPDLITYNTLI 551



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 212/447 (47%), Gaps = 33/447 (7%)

Query: 40  GSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC 99
            S   + +S+L +  T  P  V D L+  Y       +A + FRLL  H   IPA     
Sbjct: 71  ASRLDIVSSLLASSPTPQPQ-VFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNA 129

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + R   P +T   Y  +L      + Y  N+++H  CK  +  +   V  E  KR 
Sbjct: 130 LLAALSRAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRC 189

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V+ N +++   +A +++    L   M   G++P + TY++++ GL +  R D A 
Sbjct: 190 VFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAR 249

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            +   M   G+ P+   F  LI G C+ G ++ A                          
Sbjct: 250 EVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLF 309

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G+M  A + + EM   GL PD + YT+++ GFC+ G +  AL +R EM+  G   D 
Sbjct: 310 TRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDV 369

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +  L++G C+  ++ +AE +L EM + G+ PD  T+T +I  +C++G+ +   +    
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT 429

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           +      P + TYN L++G+C+ G L  AN L D M    + P+ +TY+IL++ HC+ G 
Sbjct: 430 ISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            ++      E   KG+V +   Y S++
Sbjct: 490 VDNAFAFLDEMVNKGIVPNIMTYNSII 516



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 188/367 (51%), Gaps = 8/367 (2%)

Query: 51  ETRGTHL-PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           E RG  + P +V    L+ ++   G +D A +  R +R+            +I    R  
Sbjct: 289 EMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAG 348

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           L    L    E++ +G  P V  +N L++ LCKE ++ DA+ + +E  +RG+     +F 
Sbjct: 349 LMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFT 408

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           TLI+G+C+  N+++  +    +    +RPD+ TY+ LI+G+C++  L  A  L  +M  R
Sbjct: 409 TLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSR 468

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
            + PN V ++ LID HC+ G++D       A   +DEM   G+ P+ +TY  ++ G+C+ 
Sbjct: 469 EIFPNHVTYSILIDSHCEKGQVD------NAFAFLDEMVNKGIVPNIMTYNSIIKGYCRS 522

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G++        +M    +  D + +  LI G+ + GK+ EA  +L+ M    ++PD  TY
Sbjct: 523 GNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTY 582

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            M+I  F  +G+ +    + K+M + G  P   TY +++NG    G  K +  L D ML 
Sbjct: 583 NMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQ 642

Query: 409 LGVVPDD 415
            G+ PDD
Sbjct: 643 KGLAPDD 649


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 230/469 (49%), Gaps = 31/469 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P ++ +L +   M+  L  HK    A+ LL  I  K  + S   L A +       +   
Sbjct: 62  PDYKHSLQSSWAMIFILTEHKHFKTAQGLLEKIAHKDFISSPLVLNALVTSYDNPDVNAH 121

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           +L  LMI+YV+     DAIQ    +R H F+     C  L++ + +  L       Y ++
Sbjct: 122 ILSWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKM 181

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +  G  P+++++NVL+H  CK G ++ A+ +  E   + +     ++NTLI+ + +    
Sbjct: 182 IRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLISLYSRKSLH 241

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   ++  ME +G+ PD+ TY++LI G CKE ++ +A  L  E+  + ++PN V +TTL
Sbjct: 242 YEALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREAVKLFREI--KDVSPNHVTYTTL 299

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           IDG+C+    + A                             G +++A K+++EM    +
Sbjct: 300 IDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKV 359

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD +T   L++ +CK GD++SAL ++ +M+  G++LD+  + ALI GFC    +  A+ 
Sbjct: 360 EPDNVTCNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRDMESAKE 419

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L  ML VGL P   TY+ ++D +C+ G+      LL E  + G+   +    AL+  LC
Sbjct: 420 LLFCMLDVGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVDLSVCRALIRRLC 479

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
              ++  A  +  TM   GV  D + Y  L   + K G      ++ SE
Sbjct: 480 HQERVGFAEKIYSTMHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLSE 528



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 164/351 (46%), Gaps = 49/351 (13%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ DRM R                 G SP +  +N L++  CKEGK+++A  +F E   +
Sbjct: 246 CVQDRMERA----------------GVSPDIVTYNSLIYGFCKEGKMREAVKLFREI--K 287

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +    V++ TLI+G+C+  + +E  RL  VME  G+   V TY++++  LC+E R+ DA
Sbjct: 288 DVSPNHVTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDA 347

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------- 253
             LL+EM ER + P++V   TLI+ +CK G +  A                         
Sbjct: 348 NKLLNEMGERKVEPDNVTCNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHG 407

Query: 254 ----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                DM+ A++++  M   GL+P   TY+ L+DG+C+ G+  + + +  E + +G  +D
Sbjct: 408 FCWVRDMESAKELLFCMLDVGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVD 467

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
                ALI   C   +V  AE++   M   G+  D   YT +   + K+G +     +L 
Sbjct: 468 LSVCRALIRRLCHQERVGFAEKIYSTMHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLS 527

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
           EM     L  ++ Y         H  +   ++  D + + G++   IT  I
Sbjct: 528 EMTKRSLLINLKLYRCFNASYGPHNSI--LHLFWDHVAERGLLSKSITKEI 576



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           ++ M+I   CK    +   ++L+ MR  G  P +     L+N L K             M
Sbjct: 124 SWLMIIYVNCKM--PQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKM 181

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           + +GVVP+   YN+L+   CK G+ E  ++L  E   K +  D   Y +L+S  S+
Sbjct: 182 IRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLISLYSR 237


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 210/401 (52%), Gaps = 14/401 (3%)

Query: 61  VLDALMIVYVD----LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           V+D L+ VY      LGF     + F LL         + C  L+  +++ N   ++   
Sbjct: 126 VVDLLIHVYSTQFKHLGF-GVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQV 184

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +   G +P VY+F+ +++  C  G++ DA  +F +  K G+    V++N +I+G CK
Sbjct: 185 FDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCK 244

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              LDE F+ K  ME   ++P + TY  LINGL K  R D+A  +L EM +RG  PN+V+
Sbjct: 245 NGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVV 304

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + TLIDG+C+       G++  A +I D+M +NG++P+ +T   L+ G+CK   +E A  
Sbjct: 305 YNTLIDGYCR------IGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEH 358

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM+  G  ++   FT++I   C   +   A   + EML    KP+D   T+++   C
Sbjct: 359 LLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLC 418

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +NG       L   +   G      T NAL++GLC+ G  + A  LL  ML+ G+V D I
Sbjct: 419 QNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSI 478

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +YN L+   CK G  E+  KL+ E   +G+  D   Y  L+
Sbjct: 479 SYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLL 519



 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 193/358 (53%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + +    +  +  +  +L+ G++ +    N L+H LC+ G  ++A  +  E  +RG
Sbjct: 413 LVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERG 472

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   ++S+NTLI   CK   ++EGF+LK  M   G++PD+YTY+ L++GLC   ++++A 
Sbjct: 473 LVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAG 532

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L HE  + G  P+   +  +IDG+CK  R++      E  K+  EM T  +  + + Y 
Sbjct: 533 GLWHECKKNGNFPDAYTYGIMIDGYCKANRVE------EGEKLFQEMVTMKIEQNAVVYG 586

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+  +C+ G++  A  +R +M  RGI   +  +++LI G    G V  A ++L EM K 
Sbjct: 587 TLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKE 646

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL P+   YT +I  +CK G       +L+EM  +   P   TY  ++NG CK G +K A
Sbjct: 647 GLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAA 706

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
             LL+ M   G+VPD +TYN L  G CK G  E+  K   L S  G+  D   YT+L+
Sbjct: 707 AKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLI 764



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 196/441 (44%), Gaps = 44/441 (9%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           RG     +V + L+  Y  +G +  A+Q    +  +     +  C  LI    ++N    
Sbjct: 296 RGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEH 355

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
                 E+L  G   +   F  ++H+LC + +   A +   E   R           L++
Sbjct: 356 AEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVS 415

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+     E   L   +   G   +  T +ALI+GLC+    ++A  LL EM ERGL  
Sbjct: 416 GLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVL 475

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + + TLI   CK G+++      E  K+ +EM   G+ PD  TY +LL G C  G +E
Sbjct: 476 DSISYNTLILACCKEGKVE------EGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIE 529

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  E  K G   D   +  +I G+C+  +V E E++ +EM+ + ++ +   Y  +I
Sbjct: 530 EAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLI 589

Query: 353 DCFCKNGDTKTGFR-----------------------------------LLKEMRSDGHL 377
             +C+NG+ +  FR                                   LL EMR +G  
Sbjct: 590 RAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLS 649

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P V  Y AL+ G CK GQ+   + +L  M    V P+ ITY I++ GHCK GN +   KL
Sbjct: 650 PNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKL 709

Query: 438 QSE---KGLVSDYACYTSLVS 455
            +E   KG+V D   Y +L +
Sbjct: 710 LNEMAQKGIVPDAVTYNALTN 730



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 29/235 (12%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G + E    G  P  Y + +++   CK  ++++ + +F E     +   AV + TLI  +
Sbjct: 533 GLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAY 592

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C+  N+ E FRL+  M   G+     TYS+LI+GL     +D A  LL EM + GL+PN 
Sbjct: 593 CENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNV 652

Query: 235 VIFTTLIDGHCKNGRI--------DMA---------------------GDMKEARKIVDE 265
           V +T LI G+CK G++        +M+                     G+MK A K+++E
Sbjct: 653 VCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNE 712

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           M   G+ PD +TY  L +GFCKEG +E AL +   M   GI LD++ +T LI G+
Sbjct: 713 MAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 6/164 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   +   ++ L+H L   G +  A  + DE  K GL    V +  LI G+CK   + + 
Sbjct: 612 GIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKV 671

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M  + + P+  TY+ +ING CK   +  A  LL+EM ++G+ P+ V +  L +G
Sbjct: 672 DSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNG 731

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
            CK G+      M+EA K+ D M T G++ D ITYT L+DG+ K
Sbjct: 732 FCKEGK------MEEALKVCDLMSTGGISLDDITYTTLIDGWHK 769


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 228/457 (49%), Gaps = 13/457 (2%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR-GTHLPG 59
           PH+  +L     M+H L  HK    A+ +L  I  K  + SS S+ ++++ T     +  
Sbjct: 68  PHYSHSLQCSWAMIHILTEHKHFKTAQHVLEKIAHKDFL-SSPSVLSTLVRTHDNQEVNS 126

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
            VL  L+I Y       DAIQ F  +R H  +     C  L++ +++  +  +    Y  
Sbjct: 127 QVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKR 186

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P++Y++N L H   K G ++ A+ + +E   +G+     ++NTL++ +CK   
Sbjct: 187 MVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGM 246

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E   +++ ME  G+  D+ +Y++LI G CKE R+ +A  +  E+  +  TPN V +TT
Sbjct: 247 HYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEI--KNATPNHVTYTT 304

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LIDG+CK        +++EA K+   M   GL P  +TY  +L   C++G +  A  +  
Sbjct: 305 LIDGYCK------TNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLN 358

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM +R ++ DN+    LI+ +C+ G +  A +   +ML+ GLKPD  TY  +I  FCK  
Sbjct: 359 EMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTN 418

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           + ++   L+  M   G  P+  TY+ +++G  K   +     L D  L  G+  D   Y 
Sbjct: 419 ELESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYR 478

Query: 420 ILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSL 453
            L+   CK    +  ++L      KG+  +   YTS+
Sbjct: 479 ALIRSSCKVERIQCAERLFYHMEGKGISGESVIYTSI 515



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 2/211 (0%)

Query: 49  ILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           ++E +G + PG+V  ++++      G + DA +    + +   +     C  LI+   + 
Sbjct: 324 LMEAKGLY-PGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITCNTLINAYCKI 382

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                 L F  ++L+ G  P  + +  L+H  CK  +++ A+ +       G   +  ++
Sbjct: 383 GDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMFSMLDAGFTPSYCTY 442

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + +++G+ K  N+D    L       G+  DV  Y ALI   CK  R+  AE L + M  
Sbjct: 443 SWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRALIRSSCKVERIQCAERLFYHMEG 502

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           +G++   VI+T++   +   G +  A  M E
Sbjct: 503 KGISGESVIYTSIAYAYWNVGNVSAASSMLE 533



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 71/181 (39%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +  R      +  + L+  Y  +G L  A++    + +   +      + LI    +TN 
Sbjct: 360 MSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNE 419

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                     +LD G++PS   ++ ++    K+  +     + DEF  RG+      +  
Sbjct: 420 LESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRA 479

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI   CK + +    RL   MEG G+  +   Y+++         +  A  +L EM  R 
Sbjct: 480 LIRSSCKVERIQCAERLFYHMEGKGISGESVIYTSIAYAYWNVGNVSAASSMLEEMARRR 539

Query: 230 L 230
           L
Sbjct: 540 L 540


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 224/436 (51%), Gaps = 15/436 (3%)

Query: 10  YSTMVHFLVAHKMHSQAR----DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           YS ++H L   K++++AR    DL+  + + +      S+F  +     +     V   L
Sbjct: 73  YSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVL 132

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           +I + ++G +++A+  +  +      +PA + C  ++D +++          Y +++  G
Sbjct: 133 IIAFSEMGLVEEALWVYYKMDV----LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+V  +  L+   C++G    A  +FDE  ++ +  T V +  LI G C    + E  
Sbjct: 189 ASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE 248

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +   M  SGM P++YTY+ +++G CK   +  A  L  EM   GL PN V F  LIDG 
Sbjct: 249 SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGL 308

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK        +M  ARK + +M + G+ P+   Y  L+DG+CK G+L  AL +  E+ K 
Sbjct: 309 CKTD------EMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            I  D   ++ LI G C   ++ EA+ +L+EM K G  P+  TY  +ID +CK G+ +  
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +  +M   G  P + T++ L++G CK G+++ A  L   M+  G++PD + Y  L++G
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 425 HCKHGNPEDFDKLQSE 440
           H K GN ++  +L  E
Sbjct: 483 HFKDGNTKEAFRLHKE 498



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 192/357 (53%), Gaps = 22/357 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y E+L  G  P+V  F +L+  LCK  ++  A+    +    G+      +N LI+
Sbjct: 282 ALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CKA NL E   L S +E   + PDV+TYS LI GLC  +R+++A+ LL EM ++G  P
Sbjct: 342 GYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLP 401

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + TLIDG+CK G      +M++A ++  +M   G+ P+ IT++ L+DG+CK G +E
Sbjct: 402 NAVTYNTLIDGYCKEG------NMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           +A+ +  EM+ +G+  D VA+TALI G  + G   EA R+ +EM + GL P+  T + +I
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 353 DCFCKNGDTKTGFRLL-------------KEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           D  CK+G      +L               E+      P    Y AL+ GLC  G++  A
Sbjct: 516 DGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKA 575

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
           +     M   G+ PD  T  ++++GH +  +  D   LQ++    G++ + + Y  L
Sbjct: 576 SKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVL 632



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 21/330 (6%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKH-------YFRIPARGCRCLIDRMMRTNLPTV 112
            V + L+  Y   G L +A+     + KH        + I  +G  C +DRM   +    
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGL-CGVDRMEEAD---- 388

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
             G   E+   G+ P+   +N L+   CKEG ++ A  V  +  ++G+    ++F+TLI+
Sbjct: 389 --GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CKA  ++    L + M   G+ PDV  Y+ALI+G  K+    +A  L  EM E GL P
Sbjct: 447 GYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP 506

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLN-----PDKITYTILLDGF 285
           N    + LIDG CK+GRI  A  +  A+   D     TN L+     P+ + YT L+ G 
Sbjct: 507 NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGL 566

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C +G +  A     +M   G+  D      +I G  R   + +   +  ++LK+G+ P+ 
Sbjct: 567 CTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNS 626

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           + Y ++   + ++G  K+  R  +++   G
Sbjct: 627 SVYRVLAKGYEESGYLKSALRCSEDLSGIG 656



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 19/236 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++ + G  P++  F+ L+   CK GK++ A  ++ E   +GL    V++  LI+GH K  
Sbjct: 428 QMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL-------------HEM 225
           N  E FRL   M+ +G+ P+V+T S LI+GLCK+ R+ DA  L              +E+
Sbjct: 488 NTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNEL 547

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
                +PN V++T LI G C +GRI       +A K   +M  +GL PD  T  +++ G 
Sbjct: 548 DRSLCSPNHVMYTALIQGLCTDGRI------FKASKFFSDMRCSGLRPDVFTCIVIIQGH 601

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
            +   L   + ++ +++K GI  ++  +  L  G+   G +  A R   ++  +G+
Sbjct: 602 FRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGI 657



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF-------------DEFGKRGLHATAV 165
           E+ + G  P+V+  + L+  LCK+G+I DA  +F             +E  +       V
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHV 557

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
            +  LI G C    + +  +  S M  SG+RPDV+T   +I G  +   L D  +L  ++
Sbjct: 558 MYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADI 617

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
            + G+ PN  ++  L  G+ ++G +  A    E    +   C+N
Sbjct: 618 LKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGIGCSN 661


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 224/436 (51%), Gaps = 15/436 (3%)

Query: 10  YSTMVHFLVAHKMHSQAR----DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           YS ++H L   K++++AR    DL+  + + +      S+F  +     +     V   L
Sbjct: 73  YSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVL 132

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           +I + ++G +++A+  +  +      +PA + C  ++D +++          Y +++  G
Sbjct: 133 IIAFSEMGLVEEALWVYYKMDV----LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+V  +  L+   C++G    A  +FDE  ++ +  T V +  LI G C    + E  
Sbjct: 189 ASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE 248

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +   M  SGM P++YTY+ +++G CK   +  A  L  EM   GL PN V F  LIDG 
Sbjct: 249 SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGL 308

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK        +M  ARK + +M + G+ P+   Y  L+DG+CK G+L  AL +  E+ K 
Sbjct: 309 CKTD------EMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            I  D   ++ LI G C   ++ EA+ +L+EM K G  P+  TY  +ID +CK G+ +  
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +  +M   G  P + T++ L++G CK G+++ A  L   M+  G++PD + Y  L++G
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 425 HCKHGNPEDFDKLQSE 440
           H K GN ++  +L  E
Sbjct: 483 HFKDGNTKEAFRLHKE 498



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/266 (19%), Positives = 115/266 (43%), Gaps = 22/266 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++++G+ P +++   L+      G + DA  +FDE   + L    +S+ ++I+ +   + 
Sbjct: 657 VINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNL----ISWTSVISAYVDNQR 712

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            ++  +L   M+   ++PD+ T +  ++       LD  E +   +  RGL  +  +  +
Sbjct: 713 PNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNS 772

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI+ + K       G++  AR+       + + P+ +T+  +L      G +E      +
Sbjct: 773 LINMYSK------CGEIGTARRF------SLVLPNDVTFMGVLMACSHAGLVEEGKQHFR 820

Query: 300 EMIKRGIELDNVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            M +       ++ F  ++   CR G + EA   +   LK+ ++P+   +  ++      
Sbjct: 821 SMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFI---LKMPVRPNAVVWRTLLGACSLQ 877

Query: 359 G--DTKTGFRLLKEMRSDGHLPAVET 382
           G  D K   R   + R D    ++E 
Sbjct: 878 GMWDKKMLVRNQIKQRRDPGCSSIEV 903


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 208/392 (53%), Gaps = 44/392 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R     V   ++ ++++ G S +VY +N +++  CK GK+K A+++F E   +G
Sbjct: 406 LIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKG 465

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T  ++ +LI+G+CK   + + F+L   M G G+ P+  T++ALI GLC+ N++ +A 
Sbjct: 466 LKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEAS 525

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT-- 277
            L  EM E  + PN+V +  LI+GHC+       G+   A +++DEM   GL+PD  T  
Sbjct: 526 KLFDEMVELKILPNEVTYNVLIEGHCRE------GNTTRAFELLDEMIKKGLSPDTYTYR 579

Query: 278 ---------------------------------YTILLDGFCKEGDLESALDIRKEMIKR 304
                                            YT LL GFCKEG ++ AL  R+EM+ R
Sbjct: 580 PLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGR 639

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+++D V++  LISG       +  E +LREM   G++PD+  YT++ID F K+G+ K  
Sbjct: 640 GLQMDLVSYAVLISGALNQNDRILFE-LLREMHGKGMQPDNVIYTILIDGFIKSGNLKKA 698

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F     M  +G++P   TY AL+NGL K G +  A +L   ML    +P+ ITY   L+ 
Sbjct: 699 FEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDH 758

Query: 425 HCKHGNPEDFDKLQSE--KGLVSDYACYTSLV 454
             K GN E+  +L +   +G  ++   Y  L+
Sbjct: 759 LTKEGNMENALQLHNAMLQGSFANTVTYNILI 790



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 32/426 (7%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            D L+  YV    + D +    L+R +      R    L++ + R       L  +  ++
Sbjct: 158 FDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLV 217

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P  Y++ V++  LC+      A+ + ++    G   + V++N  ING CK+K + 
Sbjct: 218 NAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVW 277

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   +K  +   G++ D+ TY  L+ GLC+    +    ++ EM E G  P++   + LI
Sbjct: 278 EAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLI 337

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           +G  K G I+ A                             G ++EA  +   M   GLN
Sbjct: 338 EGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLN 397

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+ +TYTIL+DGF +   L+ A     +MI+ GI     ++ ++I+  C+ GK+  AE +
Sbjct: 398 PNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELL 457

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            +EM+  GLKP  ATYT +I  +CK+G     F+L  EM   G  P   T+ AL+ GLC+
Sbjct: 458 FKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQ 517

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
             ++  A+ L D M++L ++P+++TYN+L+EGHC+ GN     +L  E   KGL  D   
Sbjct: 518 INKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYT 577

Query: 450 YTSLVS 455
           Y  L++
Sbjct: 578 YRPLIA 583



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 193/399 (48%), Gaps = 67/399 (16%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G S S+  +NV ++ LCK  ++ +A  V    G++GL A  V++ TL+ G C+ +  + G
Sbjct: 255 GCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVG 314

Query: 184 FRLKSVM-------------------------EGS----------GMRPDVYTYSALING 208
             +   M                         EG+          G+ P+++ Y+++IN 
Sbjct: 315 MEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINS 374

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------------- 253
           LCK  +L++AELL   M ERGL PNDV +T LIDG  +  ++D+A               
Sbjct: 375 LCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISAT 434

Query: 254 --------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                         G MK A  +  EM   GL P   TYT L+ G+CK+G +  A  +  
Sbjct: 435 VYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYH 494

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  +GI  + V FTALI G C+  K+ EA ++  EM+++ + P++ TY ++I+  C+ G
Sbjct: 495 EMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREG 554

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +T   F LL EM   G  P   TY  L+ GLC  G++  A   ++ +       D++ Y 
Sbjct: 555 NTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYT 614

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            LL+G CK G  ++    + E   +GL  D   Y  L+S
Sbjct: 615 ALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLIS 653



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 187/386 (48%), Gaps = 32/386 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI    +  L       Y E+   G +P+   F  L+  LC+  K+ +A  +FDE  +  
Sbjct: 476 LISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELK 535

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++N LI GHC+  N    F L   M   G+ PD YTY  LI GLC   R+ +A+
Sbjct: 536 ILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAK 595

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRID------------------------MAGD 255
             ++++  +    +++ +T L+ G CK GRI                         ++G 
Sbjct: 596 EFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGA 655

Query: 256 MKEARKIV----DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           + +  +I+     EM   G+ PD + YTIL+DGF K G+L+ A +    MI  G   ++V
Sbjct: 656 LNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSV 715

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +TAL++G  + G V EA+ + + ML     P+  TY   +D   K G+ +   +L   M
Sbjct: 716 TYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAM 775

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G      TYN L+ G C+ G+ + A  LLD M+ +G+VPD ITY+  +  +CK GN 
Sbjct: 776 L-QGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNV 834

Query: 432 E---DFDKLQSEKGLVSDYACYTSLV 454
           +   D  +   ++GL  D   +  L+
Sbjct: 835 DAAMDMWECMLQRGLKPDRVVFNFLI 860



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 146/291 (50%), Gaps = 8/291 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L+   CKEG+IK+A +   E   RGL    VS+  LI+G    +N    F L   M 
Sbjct: 613 YTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALN-QNDRILFELLREMH 671

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
           G GM+PD   Y+ LI+G  K   L  A    + M   G  PN V +T L++G  K     
Sbjct: 672 GKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFK----- 726

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            AG + EA+ +   M      P+ ITY   LD   KEG++E+AL +   M++ G   + V
Sbjct: 727 -AGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ-GSFANTV 784

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI G+C+ GK  EA ++L  M+ +G+ PD  TY+  I  +CK G+      + + M
Sbjct: 785 TYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECM 844

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              G  P    +N L++  C +G+L  A  L + M+  G+ P   TY+ L+
Sbjct: 845 LQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLM 895



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 166/313 (53%), Gaps = 11/313 (3%)

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           F E  K+   +++  F+ LI  + + K + +G  + ++M   G+ P+V T SAL+N L +
Sbjct: 143 FFESYKKYKFSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALAR 202

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
             +      L   +   G+ P+  I+T ++   C+        D  +A++I+++   NG 
Sbjct: 203 IRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCE------LKDFNKAKEIINQAEGNGC 256

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
           +   +TY + ++G CK   +  A+++++ + ++G++ D V +  L+ G CR  +      
Sbjct: 257 SLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGME 316

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           M+ EM+++G  P +A  + +I+   K G  +  F LL ++   G +P +  YN+++N LC
Sbjct: 317 MMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLC 376

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE----DFDKLQSEKGLVSDY 447
           K G+L+ A +L   M + G+ P+D+TY IL++G  +    +     F+K+  E G+ +  
Sbjct: 377 KTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKM-IECGISATV 435

Query: 448 ACYTSLVSKSSKY 460
             Y S+++   K+
Sbjct: 436 YSYNSMINCQCKF 448



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 15/235 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID  +++        F+  ++  GY P+   +  L++ L K G + +A+++F    KR 
Sbjct: 685 LIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLF----KRM 740

Query: 160 LHATAV----SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           L   A+    ++   ++   K  N++   +L + M   G   +  TY+ LI G C+  + 
Sbjct: 741 LVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAML-QGSFANTVTYNILIRGYCQIGKF 799

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +A  LL  M   G+ P+ + ++T I  +CK G +D A DM E       M   GL PD+
Sbjct: 800 QEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWEC------MLQRGLKPDR 853

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + +  L+   C  G+L+ AL +R +M+ RG++     + +L+    +  ++ + +
Sbjct: 854 VVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQVQ 908



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C +D + +       L  +  +L   ++ +V  +N+L+   C+ GK ++A  + D     
Sbjct: 754 CFLDHLTKEGNMENALQLHNAMLQGSFANTV-TYNILIRGYCQIGKFQEAAKLLDVMIGI 812

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    ++++T I  +CK  N+D    +   M   G++PD   ++ LI+  C    LD A
Sbjct: 813 GMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRA 872

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
             L ++M  RGL P    + +L+    +  R+
Sbjct: 873 LQLRNDMMLRGLKPTQSTYHSLMVQLAQRARL 904


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 229/453 (50%), Gaps = 17/453 (3%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASI---LETRGTHLPGLVLDAL 65
           A++ +   L A  + + A  LL  ++  +   S   + ASI   L   G   P  VLD L
Sbjct: 124 AFAHLAMSLCAGSLFNLANGLLIKMI--RAYPSPPVVLASIHRALSDSGHRSPA-VLDVL 180

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +  Y   G + DA +   ++R        R C  L+  ++R +   +       ++  G 
Sbjct: 181 VDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGI 240

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP VY ++ L+   CK  +   A+ V  E  +RG     V++N LI G C++  ++E F 
Sbjct: 241 SPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFG 300

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            K  ME  G+ PD +TY ALINGLCK  R ++A+ LL EM    L PN V++  LIDG  
Sbjct: 301 FKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFM 360

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G  D      EA K++ EM   G+ P+KITY  L+ G CK G ++ A  + K+M++  
Sbjct: 361 REGNAD------EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 414

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D + +  +I G  R     +A R+L EM   G+ P+  TY+++I   C++G+ +   
Sbjct: 415 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 474

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL+EM + G  P    Y  L++G C+ G +  A  + D M  + V+PD   YN L+ G 
Sbjct: 475 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 534

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            K G  E+    F ++Q E+GL+ +   Y+ L+
Sbjct: 535 SKVGRVEESTKYFAQMQ-ERGLLPNEFTYSGLI 566



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 184/344 (53%), Gaps = 9/344 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G SP+VY +++++H LC+ G+ + A  + +E   +GL   A  +  LI+G+C+  
Sbjct: 444 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 503

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+     +   M    + PD+Y Y++LI GL K  R++++     +M ERGL PN+  ++
Sbjct: 504 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 563

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G+ KNG      D++ A ++V  M   GL P+ + Y  LL+ + K  D+E      
Sbjct: 564 GLIHGYLKNG------DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 617

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M+ +G+ LDN  +  LI      G +  A R+L  + K G  PD   Y+ +I   CK 
Sbjct: 618 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKT 677

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            D +  F +L EM   G  P +  YNAL++GLCK G +  A  + +++L  G+VP+ +TY
Sbjct: 678 ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 737

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
             L++G CK G+  +   L +E    G+  D   Y+ L +  S 
Sbjct: 738 TSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSS 781



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 206/396 (52%), Gaps = 39/396 (9%)

Query: 100 LIDRMMRT--NLPTVTLGFYLEILDYGY-SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           L+ +M+R   + P V    +  + D G+ SP+V   +VL+    K G+++DA  V     
Sbjct: 144 LLIKMIRAYPSPPVVLASIHRALSDSGHRSPAV--LDVLVDTYKKSGRVQDAAEVVLMMR 201

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            RG+  +    N L+    +A  +   ++++  M G+G+ PDVYTYS LI   CK    D
Sbjct: 202 DRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFD 261

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK------------------- 257
            A+ +L EM ERG   N V +  LI G C++G ++ A   K                   
Sbjct: 262 TAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALI 321

Query: 258 ----------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                     EA+ ++DEM    L P+ + Y  L+DGF +EG+ + A  + KEM+  G++
Sbjct: 322 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 381

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + + +  L+ G C+ G++  A  +L++M++   +PD  TY ++I+   ++   K  FRL
Sbjct: 382 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRL 441

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L EM + G  P V TY+ +++GLC+ G+ + A+ LL+ M   G+ P+   Y  L+ G+C+
Sbjct: 442 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 501

Query: 428 HGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSK 459
            GN     E FDK+ ++  ++ D  CY SL+   SK
Sbjct: 502 EGNVSLACEIFDKM-TKVNVLPDLYCYNSLIFGLSK 536



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 202/425 (47%), Gaps = 26/425 (6%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
            ++ YS M+H L       +A DLL  + +K G+  +A ++A ++               
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTK-GLKPNAFVYAPLISG------------- 498

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-RCLIDRMMRTNLPTVTLGFYLEILDYG 124
              Y   G +  A + F  + K    +P   C   LI  + +      +  ++ ++ + G
Sbjct: 499 ---YCREGNVSLACEIFDKMTKVNV-LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 554

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+ + ++ L+H   K G ++ A+ +       GL    V +  L+  + K+ ++++  
Sbjct: 555 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 614

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
                M   G+  D   Y  LI+ L     ++ A  +L  + + G  P+  ++++LI G 
Sbjct: 615 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGL 674

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK        D ++A  I+DEM   G++P+ + Y  L+DG CK GD+  A ++   ++ +
Sbjct: 675 CKT------ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK 728

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  + V +T+LI G C+ G +  A  +  EML  G+ PD   Y+++       GD +  
Sbjct: 729 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQA 788

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L++EM   GH  ++ ++N L++G CK G+++    LL  ++  G+VP+ +T   ++ G
Sbjct: 789 MFLIEEMFLRGH-ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISG 847

Query: 425 HCKHG 429
             + G
Sbjct: 848 LSEAG 852



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 151/314 (48%), Gaps = 24/314 (7%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +LD G      ++ +L+H L   G ++ A  V     K G       +++LI+G CK
Sbjct: 617 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 676

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             + ++ F +   M   G+ P++  Y+ALI+GLCK   +  A  + + +  +GL PN V 
Sbjct: 677 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 736

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T+LIDG CK       GD+  A  + +EM   G+ PD   Y++L  G    GDLE A+ 
Sbjct: 737 YTSLIDGSCK------VGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMF 790

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM  RG      +F  L+ GFC+ GK+ E  ++L  ++  GL P+  T   +I    
Sbjct: 791 LIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLS 849

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           + G       +  E++      A   +++L                +D M++ G +P D+
Sbjct: 850 EAGKLSEVHTIFVELQQKTSESAARHFSSL---------------FMD-MINQGKIPLDV 893

Query: 417 TYNILLEGHCKHGN 430
             + ++  HCK GN
Sbjct: 894 VDD-MIRDHCKEGN 906



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 143/326 (43%), Gaps = 25/326 (7%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +T       G   E+   G  P++  +N L+  LCK G I  A+ VF+    +G
Sbjct: 670 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 729

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V++ +LI+G CK  ++   F L + M  +G+ PD + YS L  G      L+ A 
Sbjct: 730 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 789

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ EM  RG       F  L+DG CK G+      M+E  K++  +   GL P+ +T  
Sbjct: 790 FLIEEMFLRGHASISS-FNNLVDGFCKRGK------MQETLKLLHVIMGRGLVPNALTIE 842

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV------------- 326
            ++ G  + G L     I  E+ ++  E     F++L       GK+             
Sbjct: 843 NIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHC 902

Query: 327 ----VEAERMLREMLKVGLKPDD-ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
               ++   MLR+++     P   ++Y  ++D  C+ G       LLKEM   G  P+  
Sbjct: 903 KEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSEN 962

Query: 382 TYNALMNGLCKHGQLKNANMLLDTML 407
               L+  L   G ++  N +LD ML
Sbjct: 963 QCLILLTNLHTSGYIQEHNTVLDNML 988


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 209/395 (52%), Gaps = 25/395 (6%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL+   V++G+  D +    L+   +    A     L+D+M++                 
Sbjct: 171 ALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQR---------------- 214

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  +  +++ LCK G I  A  +  +  K  + A  V +NT+I+G CK K++D+ 
Sbjct: 215 GCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDA 274

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L + ME  G+RPDV+TY++LI+ LC   R  DA  LL  M ER + PN V F+ LID 
Sbjct: 275 FALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDA 334

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++PD  TY+ L++GFC    L+ A  + + MI 
Sbjct: 335 FVKEGK------LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    + V +  LI GFC+  +V E   + REM + GL  +  TY  +I    + GD   
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ K+M SDG  P + TY+ L++GLCK+G+L+ A ++ + +    + PD  TYNI++E
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  +   YT+++S
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 180/369 (48%), Gaps = 34/369 (9%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R+ LP + L    +++  GY P +   + L++  C   +I DA  + D+  + G     V
Sbjct: 128 RSQLP-LALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTV 186

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +FNTLI+G        E   L   M   G +PD+ TY A++NGLCK   +D A  LL +M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM 246

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDM 256
            +  +  + VI+ T+IDG CK   ID A                             G  
Sbjct: 247 EKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRW 306

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +A +++  M    +NP+ +T++ L+D F KEG L  A  +  EMIKR I+ D   +++L
Sbjct: 307 SDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+GFC   ++ EA+ M   M+     P+  TY  +I  FCK    + G  L +EM   G 
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--- 433
           +    TYN L+ GL + G    A  +   M+  GV PD ITY+ILL+G CK+G  E    
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486

Query: 434 -FDKLQSEK 441
            F+ LQ  K
Sbjct: 487 VFEYLQKSK 495



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 6/297 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+V  F+ L+    KEGK+ +A+ ++DE  KR +     ++++LING C    LDE   
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M      P+V TY+ LI G CK  R+++   L  EM +RGL  N V + TLI G  
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G  DMA      +KI  +M ++G+ PD ITY+ILLDG CK G LE AL + + + K  
Sbjct: 442 QAGDCDMA------QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 495

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E D   +  +I G C+ GKV +   +   +   G+KP+   YT +I  FC+ G  +   
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 555

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            L +EM+ DG LP    YN L+    + G    +  L+  M   G V D  T ++++
Sbjct: 556 ALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI 612



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 187/358 (52%), Gaps = 12/358 (3%)

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           I +M + +L  ++LG  ++ L   Y   +Y +N+L++  C+  ++  A  V  +  K G 
Sbjct: 90  IAKMKKFDL-VISLGERMQNLRISYD--LYSYNILINCFCRRSQLPLALAVLGKMMKLGY 146

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
               V+ ++L+NG+C +K + +   L   M   G +PD  T++ LI+GL   N+  +A  
Sbjct: 147 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVA 206

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L+ +M +RG  P+ V +  +++G CK G ID+      A  ++ +M    +  D + Y  
Sbjct: 207 LVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDL------ALSLLKKMEKGKIEADVVIYNT 260

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++DG CK   ++ A  +  +M  +GI  D   + +LIS  C  G+  +A R+L  M++  
Sbjct: 261 IIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERK 320

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  T++ +ID F K G      +L  EM      P + TY++L+NG C H +L  A 
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            + + M+     P+ +TYN L++G CK    E+  +L    S++GLV +   Y +L+ 
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 208/450 (46%), Gaps = 26/450 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            ++T++H L  H   S+A  L+  +V +   G    L      T G  + GL        
Sbjct: 187 TFNTLIHGLFLHNKASEAVALVDQMVQR---GCQPDLV-----TYGAVVNGLC------- 231

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G +D A+   + + K            +ID + +          + ++   G  P 
Sbjct: 232 --KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPD 289

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ +N L+  LC  G+  DA  +     +R ++   V+F+ LI+   K   L E  +L  
Sbjct: 290 VFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PD++TYS+LING C  +RLD+A+ +   M  +   PN V + TLI G CK  
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R++      E  ++  EM   GL  + +TY  L+ G  + GD + A  I K+M+  G+  
Sbjct: 410 RVE------EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 463

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D + ++ L+ G C+ GK+ +A  +   + K  ++PD  TY ++I+  CK G  + G+ L 
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 523

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             +   G  P V  Y  +++G C+ G  + A+ L   M + G +PD   YN L+    + 
Sbjct: 524 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRD 583

Query: 429 GNPEDFDKLQSEK---GLVSDYACYTSLVS 455
           G+     +L  E    G V D +  + +++
Sbjct: 584 GDKAASAELIKEMRSCGFVGDASTISMVIN 613



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 179/355 (50%), Gaps = 16/355 (4%)

Query: 105 MRTNLPTVTL-GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           +R   P  +L G Y     Y Y   +   N L++      K+ DA  +F E  +     +
Sbjct: 26  LRKASPLFSLRGVYFSAASYDYREKLSR-NALLNL-----KLDDAIGLFGEMVQSRPLPS 79

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V FN L++   K K  D    L   M+   +  D+Y+Y+ LIN  C+ ++L  A  +L 
Sbjct: 80  IVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 139

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           +M + G  P+ V  ++L++G+C + RI       +A  +VD+M   G  PD +T+  L+ 
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHSKRIS------DAVALVDQMVEMGYKPDTVTFNTLIH 193

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G         A+ +  +M++RG + D V + A+++G C+ G +  A  +L++M K  ++ 
Sbjct: 194 GLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEA 253

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D   Y  +ID  CK       F L  +M + G  P V TYN+L++ LC +G+  +A+ LL
Sbjct: 254 DVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLL 313

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
             M++  + P+ +T++ L++   K G   + +KL  E   + +  D   Y+SL++
Sbjct: 314 SNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 218/430 (50%), Gaps = 15/430 (3%)

Query: 32  LIVSKKGMGSSASLFASI---LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LI   +   S   + ASI   L   G   P  VLD L+  Y   G + DA +   ++R  
Sbjct: 18  LIKMIRAYPSPPVVLASIHRALSDSGHRSPA-VLDVLVDTYKKSGRVQDAAEVVLMMRDR 76

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                 R C  L+  ++R +   +       ++  G SP VY ++ L+   CK  +   A
Sbjct: 77  GLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTA 136

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           + V  E  +RG     V++N LI G C++  ++E F  K  ME  G+ PD +TY ALING
Sbjct: 137 KKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALING 196

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LCK  R ++A+ LL EM    L PN V++  LIDG  + G  D      EA K++ EM  
Sbjct: 197 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD------EAFKMIKEMVA 250

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G+ P+KITY  L+ G CK G ++ A  + K+M++     D + +  +I G  R     +
Sbjct: 251 AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKD 310

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A R+L EM   G+ P+  TY+++I   C++G+ +    LL+EM + G  P    Y  L++
Sbjct: 311 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 370

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLV 444
           G C+ G +  A  + D M  + V+PD   YN L+ G  K G  E+    F ++Q E+GL+
Sbjct: 371 GYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ-ERGLL 429

Query: 445 SDYACYTSLV 454
            +   Y+ L+
Sbjct: 430 PNEFTYSGLI 439



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 185/343 (53%), Gaps = 9/343 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G SP+VY +++++H LC+ G+ + A  + +E   +GL   A  +  LI+G+C+  
Sbjct: 317 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 376

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+     +   M    + PD+Y Y++LI GL K  R++++     +M ERGL PN+  ++
Sbjct: 377 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 436

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G+ KNG      D++ A ++V  M   GL P+ + Y  LL+ + K  D+E      
Sbjct: 437 GLIHGYLKNG------DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 490

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M+ +G+ LDN  +  LI      G +  A R+L E+ K G  PD   Y+ +I   CK 
Sbjct: 491 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKT 550

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            D +  F +L EM   G  P +  YNAL++GLCK G +  A  + +++L  G+VP+ +TY
Sbjct: 551 ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 610

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSS 458
             L++G CK G+  +   L +E    G+  D   Y+ L +  S
Sbjct: 611 TSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS 653



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 207/396 (52%), Gaps = 39/396 (9%)

Query: 100 LIDRMMRT--NLPTVTLGFYLEILDYGY-SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           L+ +M+R   + P V    +  + D G+ SP+V   +VL+    K G+++DA  V     
Sbjct: 17  LLIKMIRAYPSPPVVLASIHRALSDSGHRSPAV--LDVLVDTYKKSGRVQDAAEVVLMMR 74

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            RGL  +    N L+    +A  +   ++++  M G+G+ PDVYTYS LI   CK    D
Sbjct: 75  DRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFD 134

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK------------------- 257
            A+ +L EM ERG   N V +  LI G C++G ++ A   K                   
Sbjct: 135 TAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALI 194

Query: 258 ----------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                     EA+ ++DEM    L P+ + Y  L+DGF +EG+ + A  + KEM+  G++
Sbjct: 195 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 254

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + + +  L+ G C+ G++  A  +L++M++   +PD  TY ++I+   ++ + K  FRL
Sbjct: 255 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRL 314

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L EM + G  P V TY+ +++GLC+ G+ + A+ LL+ M   G+ P+   Y  L+ G+C+
Sbjct: 315 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 374

Query: 428 HGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSK 459
            GN     E FDK+ ++  ++ D  CY SL+   SK
Sbjct: 375 EGNVSLACEIFDKM-TKVNVLPDLYCYNSLIFGLSK 409



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 203/424 (47%), Gaps = 26/424 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           ++ YS M+H L       +A DLL  + +K G+  +A ++A ++                
Sbjct: 327 VYTYSIMIHGLCQSGEPEKASDLLEEMTTK-GLKPNAFVYAPLISG-------------- 371

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-RCLIDRMMRTNLPTVTLGFYLEILDYGY 125
             Y   G +  A + F  + K    +P   C   LI  + +      +  ++ ++ + G 
Sbjct: 372 --YCREGNVSLACEIFDKMTKVNV-LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 428

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+ + ++ L+H   K G ++ A+ +       GL    V +  L+  + K+ ++++   
Sbjct: 429 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 488

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G+  D   Y  LI+ L     ++ A  +L E+ + G  P+  ++++LI G C
Sbjct: 489 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLC 548

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K        D ++A  I+DEM   G++P+ + Y  L+DG CK GD+  A ++   ++ +G
Sbjct: 549 KT------ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 602

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V +T+LI G C+ G +  A  +  EML  G+ PD   Y+++       GD +   
Sbjct: 603 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 662

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L++EM   GH  ++ ++N L++G CK G+++    LL  ++  G+VP+ +T   ++ G 
Sbjct: 663 FLIEEMFLRGH-ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 721

Query: 426 CKHG 429
            + G
Sbjct: 722 SEAG 725



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 152/314 (48%), Gaps = 24/314 (7%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +LD G      ++ +L+H L   G ++ A  V  E  K G       +++LI+G CK
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCK 549

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             + ++ F +   M   G+ P++  Y+ALI+GLCK   +  A  + + +  +GL PN V 
Sbjct: 550 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 609

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T+LIDG CK       GD+  A  + +EM   G+ PD   Y++L  G    GDLE A+ 
Sbjct: 610 YTSLIDGSCK------VGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMF 663

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM  RG      +F  L+ GFC+ GK+ E  ++L  ++  GL P+  T   +I    
Sbjct: 664 LIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLS 722

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           + G       +  E++      A   +++L                +D M++ G +P D+
Sbjct: 723 EAGKLSEVHTIFVELQQKTSESAARHFSSL---------------FMD-MINQGKIPLDV 766

Query: 417 TYNILLEGHCKHGN 430
             + ++  HCK GN
Sbjct: 767 VDD-MIRDHCKEGN 779



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 156/368 (42%), Gaps = 26/368 (7%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
           DLL        +   +S F S+L+ +G  L   +   L+      G ++ A +    + K
Sbjct: 472 DLLESYFKSDDIEKVSSTFKSMLD-QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK 530

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           +           LI  + +T       G   E+   G  P++  +N L+  LCK G I  
Sbjct: 531 NGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISY 590

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A+ VF+    +GL    V++ +LI+G CK  ++   F L + M  +G+ PD + YS L  
Sbjct: 591 ARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTT 650

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G      L+ A  L+ EM  RG       F  L+DG CK G+      M+E  K++  + 
Sbjct: 651 GCSSAGDLEQAMFLIEEMFLRGHASISS-FNNLVDGFCKRGK------MQETLKLLHVIM 703

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV- 326
             GL P+ +T   ++ G  + G L     I  E+ ++  E     F++L       GK+ 
Sbjct: 704 GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIP 763

Query: 327 ----------------VEAERMLREMLKVGLKPDD-ATYTMVIDCFCKNGDTKTGFRLLK 369
                           ++   MLR+++     P   ++Y  ++D  C+ G       LLK
Sbjct: 764 LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 823

Query: 370 EMRSDGHL 377
           EM   G+L
Sbjct: 824 EMDKRGNL 831


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 223/436 (51%), Gaps = 15/436 (3%)

Query: 10  YSTMVHFLVAHKMHSQAR----DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           YS ++H L   K++++AR    DL+  +   +      S+F  +     +     V   L
Sbjct: 73  YSAIIHVLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSVFNVLSRLESSKFTPNVFGVL 132

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           +I + ++G +++A+  +  +      +PA + C  ++D +++          Y +++  G
Sbjct: 133 IIAFSEMGLVEEALWVYYKMDV----LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+V  +  L+   C++G    A  +FDE  ++ +  T V +  LI G C    + E  
Sbjct: 189 ASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE 248

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +   M  SGM P++YTY+ +++G CK   +  A  L  EM   GL PN V F  LIDG 
Sbjct: 249 SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGL 308

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK        +M  ARK + +M + G+ P+   Y  L+DG+CK G+L  AL +  E+ K 
Sbjct: 309 CKTD------EMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            I  D   ++ LI G C   ++ EA+ +L+EM K G  P+  TY  +ID +CK G+ +  
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +  +M   G  P + T++ L++G CK G+++ A  L   M+  G++PD + Y  L++G
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 425 HCKHGNPEDFDKLQSE 440
           H K GN ++  +L  E
Sbjct: 483 HFKDGNTKEAFRLHKE 498



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 192/358 (53%), Gaps = 22/358 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y E+L  G  P+V  F +L+  LCK  ++  A+    +    G+      +N LI+
Sbjct: 282 ALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CKA NL E   L S +E   + PDV+TYS LI GLC  +R+++A+ LL EM ++G  P
Sbjct: 342 GYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLP 401

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + TLIDG+CK G      +M++A ++  +M   G+ P+ IT++ L+DG+CK G +E
Sbjct: 402 NAVTYNTLIDGYCKEG------NMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           +A+ +  EM+ +G+  D VA+TALI G  + G   EA R+ +EM + GL P+  T + +I
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 353 DCFCKNGDTKTGFRLL-------------KEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           D  CK+G      +L               E+      P    Y AL+ GLC  G++  A
Sbjct: 516 DGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKA 575

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +     M   G+ PD  T  ++++GH +  +  D   LQ++    G++ + + Y  L 
Sbjct: 576 SKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLA 633



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 154/325 (47%), Gaps = 21/325 (6%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKH-------YFRIPARGCRCLIDRMMRTNLPTV 112
            V + L+  Y   G L +A+     + KH        + I  +G  C +DRM   +    
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGL-CGVDRMEEAD---- 388

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
             G   E+   G+ P+   +N L+   CKEG ++ A  V  +  ++G+    ++F+TLI+
Sbjct: 389 --GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CKA  ++    L + M   G+ PDV  Y+ALI+G  K+    +A  L  EM E GL P
Sbjct: 447 GYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP 506

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLN-----PDKITYTILLDGF 285
           N    + LIDG CK+GRI  A  +  A+   D     TN L+     P+ + YT L+ G 
Sbjct: 507 NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGL 566

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C +G +  A     +M   G+  D      +I G  R   + +   +  ++LK+G+ P+ 
Sbjct: 567 CTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNS 626

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKE 370
           + Y ++   + ++G  K+      E
Sbjct: 627 SVYRVLAKGYEESGYLKSALSFCGE 651



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 39/266 (14%)

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           ++  +L   M+    +PD+ T +  ++       LD  E +   +  RGL  +  +  +L
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 790

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I+ + K       G++  AR++ D         D  T+T ++ G    G  E AL +  E
Sbjct: 791 INMYSK------CGEIGTARRLFD----GTQKKDVTTWTSMIVGHALHGQAEEALQLFTE 840

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M     E +  A     +G        E E  L       + P+D T+  V+      G 
Sbjct: 841 M----KETNKRARKNKRNG--------EXESSL-------VLPNDVTFMGVLMACSHAGL 881

Query: 361 TKTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
            + G +  + M+ D  L P +  +  +++ LC+ G L  A    + +L + V P+ + + 
Sbjct: 882 VEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEA---YEFILKMPVRPNAVVWR 938

Query: 420 ILLEGHC-----KHGNPEDFDKLQSE 440
            LL G C      +GN     K+ SE
Sbjct: 939 TLL-GACSLQGDSNGNGNSNIKIXSE 963


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 179/312 (57%), Gaps = 6/312 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+  V+  ++  LC +G I DA  V ++  +R +      + T+++G C   
Sbjct: 316 EMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKG 375

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L    R    M+  G+  D  TY+ +INGLC+   L++AE LL EM  R L  ++V +T
Sbjct: 376 DLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYT 435

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDG+CK G+      M EA ++ + M   G+ P+ +TYT L DG CK+GD+++A ++ 
Sbjct: 436 VLIDGYCKRGK------MAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELL 489

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  +G+EL+   + +LI+G C+ G + +A R + +M    LKPD  TYT +ID  CK+
Sbjct: 490 HEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKS 549

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD      LL+EM   G  P + TYN LMNG C  G+++    LLD ML+  + P+  TY
Sbjct: 550 GDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATY 609

Query: 419 NILLEGHCKHGN 430
           N L++ +C   N
Sbjct: 610 NSLMKQYCIENN 621



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 201/413 (48%), Gaps = 55/413 (13%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
            R LR++        C  ++ R+         L   +E+       +V  +N+L+  LC 
Sbjct: 220 LRRLRQYGISPSPEACNAVLSRL--------PLDEAIELFQELPHKNVCSYNILLKALCD 271

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
            G++KDA+ +FDE          V++  LI+GHC    L+   +L   M   G+ P+   
Sbjct: 272 AGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATV 328

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y++++  LC +  + DA  ++ +M +R +  ++ ++TT++ G C        GD+  AR+
Sbjct: 329 YTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNK------GDLVSARR 382

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
             DEM   GL  D +TYT +++G C+  +LE A  + +EM  R +++D V +T LI G+C
Sbjct: 383 WFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYC 442

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + GK+ EA +M   M++ G+ P+  TYT + D  CK GD +    LL EM + G      
Sbjct: 443 KRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNAC 502

Query: 382 TYNALMNGLCKHGQLKN-----------------------------------ANMLLDTM 406
           TYN+L+NGLCK G L+                                    A+ LL  M
Sbjct: 503 TYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEM 562

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
           LD G+ P  +TYN+L+ G C  G  E   KL     EK +  + A Y SL+ +
Sbjct: 563 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQ 615



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 151/293 (51%), Gaps = 6/293 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G +P+V  +  L   LCK+G ++ A  +  E   +GL   A ++N+LING CKA  
Sbjct: 457 MVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 516

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L++  R  + M+ + ++PDVYTY+ LI+ LCK   LD A  LL EM ++G+ P  V +  
Sbjct: 517 LEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNV 576

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L++G C +GR++        +K++D M    ++P+  TY  L+  +C E +++S  +I K
Sbjct: 577 LMNGFCMSGRVE------GGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYK 630

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  R +  +   +  LI G C+   + EA     EM++ G +    +Y+ +I    K  
Sbjct: 631 GMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKK 690

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
                  L  +MR +G     + Y+  ++       L++   L D +++  +V
Sbjct: 691 KFVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVEASIV 743



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 155/337 (45%), Gaps = 29/337 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           ++ E+   G +     +  +++ LC+  ++++A+ +  E   R L    V++  LI+G+C
Sbjct: 383 WFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYC 442

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E F++ + M   G+ P+V TY+AL +GLCK+  +  A  LLHEM  +GL  N  
Sbjct: 443 KRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNAC 502

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
            + +LI+G CK G ++ A                             GD+  A  ++ EM
Sbjct: 503 TYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEM 562

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G+ P  +TY +L++GFC  G +E    +   M+++ I  +   + +L+  +C    +
Sbjct: 563 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNM 622

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
                + + M    + P++ TY ++I   CK  + K       EM   G      +Y+AL
Sbjct: 623 KSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSAL 682

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           +  L K  +   A  L   M   G+  +   Y+  ++
Sbjct: 683 IRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYID 719


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 246/484 (50%), Gaps = 48/484 (9%)

Query: 22  MHSQARDLLHLIVSKKGMG---SSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           ++S A+ LL  ++S K      +S+SL   + E+  +     + + ++  YV    LD +
Sbjct: 54  LYSHAQSLLLQVISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSS 113

Query: 79  IQCFRLLRKHYFRIPARGC-----------------RCLIDRM-MRTNLPTVTLGFYL-- 118
           I  F  +    F +P   C                  C  +   ++  L   + G  +  
Sbjct: 114 IYYFNEMVDKGF-VPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKG 172

Query: 119 ---------------EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
                          E+ ++G+SP+V ++  L+   CK+G+I+ A+ +F E GK GL A 
Sbjct: 173 CCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVAN 232

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             ++  LI+G  K     +GF +   M+  G+ P+++TY+ ++N LCK+ R  DA  +  
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFD 292

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM ERG++ N V + TLI G C+  + +      EA +++D+M ++G+NP+ ITY  L+D
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKAN------EANEVMDQMKSDGINPNLITYNTLID 346

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFC    L  AL + +++  RG+    V +  L+SGFC+ G    A ++++EM + G+KP
Sbjct: 347 GFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              TYT++ID F ++ + +   +L   M   G  P V TY+ L++G C  G++  A+ L 
Sbjct: 407 SKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLF 466

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKY 460
            +M++    P+++ YN ++ G+CK G+     +L     EK L  + A Y  ++    K 
Sbjct: 467 KSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKE 526

Query: 461 RQKR 464
           R+ +
Sbjct: 527 RKSK 530



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 179/322 (55%), Gaps = 6/322 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +  +       Y ++ ++G  P+++ +N +M++LCK+G+ KDA  VFDE  +RG
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERG 298

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++NTLI G C+    +E   +   M+  G+ P++ TY+ LI+G C   +L  A 
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKAL 358

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  ++  RGL+P+ V +  L+ G CK G    AG      K+V EM   G+ P K+TYT
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAG------KVVKEMEERGIKPSKVTYT 412

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+D F +  ++E A+ +R  M + G+  D   ++ LI GFC  G++ EA R+ + M++ 
Sbjct: 413 ILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEK 472

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
             +P++  Y  ++  +CK G +    RL +EM      P V +Y  ++  LCK  + K A
Sbjct: 473 KFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEA 532

Query: 400 NMLLDTMLDLGVVPDDITYNIL 421
             L++ M+D G+ P D   N++
Sbjct: 533 EGLVEKMIDSGIGPSDSILNLI 554



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 151/281 (53%), Gaps = 6/281 (2%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+++++ +          + E+ + G S ++  +N L+  LC+E K  +A  V D+    
Sbjct: 273 CVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSD 332

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G++   +++NTLI+G C  + L +   L   ++  G+ P + TY+ L++G CK+     A
Sbjct: 333 GINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGA 392

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             ++ EM ERG+ P+ V +T LID   +      + +M++A ++   M   GL PD  TY
Sbjct: 393 GKVVKEMEERGIKPSKVTYTILIDTFAR------SDNMEKAIQLRSSMEELGLTPDVHTY 446

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           ++L+ GFC +G +  A  + K M+++  E + V +  ++ G+C+ G    A R+ REM +
Sbjct: 447 SVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEE 506

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
             L P+ A+Y  +I+  CK   +K    L+++M   G  P+
Sbjct: 507 KELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS 547


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 226/439 (51%), Gaps = 28/439 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLH---LIVSKKGMGSSASLFASILE------ 51
           P   L  H   +  H  +A  + ++AR   H   L+      G    L AS+++      
Sbjct: 58  PADHLLSHPLPSSAHLCLAAHILARARLFPHSRSLLSRLLAPGHHPHLAASLVDLLHRAA 117

Query: 52  ----TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMM 105
                R + LP +V D L+ +  D G LDDA+    L R    R+P   R C  ++  + 
Sbjct: 118 LALGPRRSALPSVV-DTLLSLLADRGLLDDAV--LALARVRELRVPPNTRTCNHILLCLA 174

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R     +    + ++     +P+V+ FN+++  LCKEG + +A+ +       G     V
Sbjct: 175 RERSSELAWRLFEQL----PAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVV 230

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N+LI+G+ K   L+E  +L   M G G RPDV TY+AL+N  CK  R++ A     EM
Sbjct: 231 TYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEM 290

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G+  N V F+T +D  CKNG +      +EA K+  +M   G+ P+++TYT L+DG 
Sbjct: 291 KREGVMANVVTFSTFVDAFCKNGMV------REAMKLFAQMRMKGMKPNEVTYTCLVDGT 344

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK G L+ AL +  EM+++G+ L+ V +T L+ G C+ GKV EAE + R M + G++ ++
Sbjct: 345 CKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANE 404

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             YT +I       +++    LL EM+  G    V  Y AL+ GLC   +L  A  LL+ 
Sbjct: 405 LLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNK 464

Query: 406 MLDLGVVPDDITYNILLEG 424
           M + G+ P+++ Y  +++ 
Sbjct: 465 MDECGLKPNNVIYTNIMDA 483



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 194/368 (52%), Gaps = 6/368 (1%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G + +A++ F  +R    +       CL+D   +       L    E++  G   +V  +
Sbjct: 313 GMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTY 372

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            VL+  LCKEGK+ +A+ VF    + G+ A  + + TLI+GH   KN +    L S M+ 
Sbjct: 373 TVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKD 432

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            GM  DV  Y ALI GLC   +LD+A+ LL++M E GL PN+VI+T ++D  C   R + 
Sbjct: 433 KGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDA-CFKARKE- 490

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                EA  ++ +M  +G  P+ +TY  L+DG CK G ++ A+    +M+  G+E +  A
Sbjct: 491 ----SEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQA 546

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +TAL+ G C+ G++ +A  +L EM+  G+  D+   T ++D   K G+ +  F L  +M 
Sbjct: 547 YTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMI 606

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           + G    +  Y   + G C    ++ A  +L  M++ G+ PD + YN L+    K GN E
Sbjct: 607 NSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNME 666

Query: 433 DFDKLQSE 440
           +   LQ+E
Sbjct: 667 EAAILQNE 674



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 164/327 (50%), Gaps = 13/327 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V + L+  L   G + DA +      +  +     + N ++    + ++ +  +RL   +
Sbjct: 130 VVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQL 189

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
                 P+V+T++ +I+ LCKE  L +A  LL  M   G +P+ V + +LIDG+ K    
Sbjct: 190 PA----PNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGK---- 241

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G+++E  K+V EM   G  PD +TY  L++ FCK G +E A     EM + G+  + 
Sbjct: 242 --CGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANV 299

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V F+  +  FC+ G V EA ++  +M   G+KP++ TYT ++D  CK G       L  E
Sbjct: 300 VTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNE 359

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    V TY  L++GLCK G++  A  +   M   G+  +++ Y  L+ GH  + N
Sbjct: 360 MVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKN 419

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            E    L SE   KG+  D + Y +L+
Sbjct: 420 SERALSLLSEMKDKGMELDVSLYGALI 446



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 137/270 (50%), Gaps = 13/270 (4%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P+  T + ++  L +E   + A  L  ++      PN   F  +ID  CK G      D+
Sbjct: 161 PNTRTCNHILLCLARERSSELAWRLFEQL----PAPNVFTFNIMIDFLCKEG------DL 210

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            EAR ++  M   G +PD +TY  L+DG+ K G+LE    +  EM   G   D V + AL
Sbjct: 211 AEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNAL 270

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           ++ FC+ G++  A     EM + G+  +  T++  +D FCKNG  +   +L  +MR  G 
Sbjct: 271 VNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGM 330

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPED 433
            P   TY  L++G CK G+L +A +L + M+  GV  + +TY +L++G CK G     ED
Sbjct: 331 KPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAED 390

Query: 434 FDKLQSEKGLVSDYACYTSLVSKSSKYRQK 463
             +L    G+ ++   YT+L+     Y+  
Sbjct: 391 VFRLMERAGIRANELLYTTLIHGHFVYKNS 420



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 35/161 (21%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D + +       +  + +++D G  P+V  +  L+  LCK G++  A ++ DE   +G
Sbjct: 515 LVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG 574

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR----------------------- 196
           +    V   +L++GH K  NL + F LK+ M  SG++                       
Sbjct: 575 MSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAR 634

Query: 197 ------------PDVYTYSALINGLCKENRLDDAELLLHEM 225
                       PD   Y+ LIN   K   +++A +L +EM
Sbjct: 635 EVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEM 675


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 220/439 (50%), Gaps = 11/439 (2%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS--KKGMGSSASLFASILETRGTHLPGL 60
            R +   Y  +VH L   +  SQA   L  +V   K  + S       IL T   +   +
Sbjct: 130 LRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKNLILCTEDCNWDPV 189

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V D L+  Y+ +G + + ++ FR + +  F         L++ +++ N        Y E+
Sbjct: 190 VFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEM 249

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
             +G +P++Y FN+L H LCK+G         ++  + G     V++NTLIN +C+   L
Sbjct: 250 ERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRL 309

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+ F L  +M   G+ PD+ +Y+AL+NGLCKE R+ +A  L H M  RGL+P+ V + TL
Sbjct: 310 DDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 369

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G+CK G+      M+E+R ++ +M  NG++PD  T  +L++G+ KEG   SAL++  E
Sbjct: 370 IHGYCKEGK------MQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVE 423

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           + + G+ +    ++ LI   CR  +   A+ +L  M K G KP+   Y  +I  FC+   
Sbjct: 424 LQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDC 483

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 L  EM      P + TY A++  L +  +      L+  M+  G++PD      
Sbjct: 484 IAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRA 543

Query: 421 LLEGHCKHGNPEDFDKLQS 439
           L  G+C+     D DK +S
Sbjct: 544 LFYGYCREN---DIDKAES 559



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 119/299 (39%), Gaps = 66/299 (22%)

Query: 115 GFYLEILDY--GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            FYL  + Y  G  P +  +  LM+ LCKEG++++A  +F     RGL    V++NTLI+
Sbjct: 312 AFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIH 371

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYT------------------------------- 201
           G+CK   + E   L   M  +G+ PD +T                               
Sbjct: 372 GYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSI 431

Query: 202 ----YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
               YS LI  LC+ENR   A+ LL  M + G  P   I+  LI   C+   I  A  +K
Sbjct: 432 SQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLK 491

Query: 258 -----------------------------EARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
                                        E   +V EM  +G+ PD      L  G+C+E
Sbjct: 492 MEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRE 551

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            D++ A  +     K     D  +F ALI      G +  +  +   MLK+GL P+  T
Sbjct: 552 NDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLT 610



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 105/270 (38%), Gaps = 25/270 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++H         ++R LLH ++     G S   F   +   G    G  L AL +V
Sbjct: 365 TYNTLIHGYCKEGKMQESRSLLHDMIWN---GISPDSFTCWVLVEGYGKEGKFLSALNLV 421

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                           L++    I       LI  + R N P         +   G+ P 
Sbjct: 422 VE--------------LQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPE 467

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           + ++N L+   C+   I +A ++  E   + +     ++  +I    +     EG  L  
Sbjct: 468 LEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVG 527

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  SGM PD+    AL  G C+EN +D AE LL    +     +   F  LI       
Sbjct: 528 EMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALI------- 580

Query: 249 RIDMA-GDMKEARKIVDEMCTNGLNPDKIT 277
           RI  A GD+  + +I D M   GL P+ +T
Sbjct: 581 RITSAKGDIARSLEIQDMMLKMGLLPNPLT 610


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 204/387 (52%), Gaps = 47/387 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G   +  V+  ++  LC +G++ DA  V ++    G+   AV F T+I+G C   
Sbjct: 312 EMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKG 371

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L    RL   M+  G+  D  T++ALINGLC+   L +A+ +L EM ++GL  + V +T
Sbjct: 372 DLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYT 431

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDG+CK G      +M EA ++ +EM    + P+ +TYT L DG CK+GD+ +A ++ 
Sbjct: 432 VLIDGYCKRG------NMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELL 485

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  +G+EL+   + +LI+G C+ G + +A R++ EM   G + D  TYT +ID  CK+
Sbjct: 486 HEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKS 545

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG-------- 410
           G+      +L+EM   G  P++ TYN LMNG C  G+++    LL+ ML+          
Sbjct: 546 GEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTY 605

Query: 411 ---------------------------VVPDDITYNILLEGHCKHGNPED---FDKLQSE 440
                                      V P++ TYNIL++GHCK  N ++   F +   E
Sbjct: 606 NSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIE 665

Query: 441 KGL---VSDYACYTSLVSKSSKYRQKR 464
           KGL    S Y+    L++K  K+ + R
Sbjct: 666 KGLRLTASSYSALIRLLNKKKKFSEAR 692



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 178/333 (53%), Gaps = 9/333 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  ++H  C  G++++A  + DE   +GL + A  + ++I   C    + +  R+
Sbjct: 285 PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRV 344

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+  D   ++ +I+G C +  L  A  L  EM +RGL  + V  T LI+G C+
Sbjct: 345 LEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCR 404

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 AG++KEA +++ EM   GL+ D +TYT+L+DG+CK G++  A  +  EM+ R +
Sbjct: 405 ------AGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRV 458

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V +TAL  G C+ G V  A  +L EM   GL+ +  TY  +I+  CK G+ +   R
Sbjct: 459 APNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMR 518

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++ EM + GH   V TY  L++ LCK G+   A+ +L  MLD G+ P   TYN+L+ G C
Sbjct: 519 IMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFC 578

Query: 427 KHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
             G  E   KL     EK +  +   Y SL+ +
Sbjct: 579 MSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQ 611



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 182/336 (54%), Gaps = 20/336 (5%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG SPS    N ++ +L     + +A  +F E   + +     S N L+     A  L 
Sbjct: 221 QYGLSPSPESCNAVLSRL----PLDEAIALFRELPDKNV----CSHNILLKALLSAGRLK 272

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  +    M      PDV TY  +++G C    L++A  LL EM  +GL  N  ++T++I
Sbjct: 273 DACQHFDEMSSP---PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVI 329

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
              C  G++       +A +++++M  +G+  D + +T ++ GFC +GDL +A  + +EM
Sbjct: 330 ALLCNKGQVS------DALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEM 383

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            KRG+  D V  TALI+G CR G++ EA+R+L+EM+  GL  D  TYT++ID +CK G+ 
Sbjct: 384 QKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNM 443

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
              FR+  EM      P V TY AL +GLCK G ++ AN LL  M + G+  +  TYN L
Sbjct: 444 VEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSL 503

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + G CK GN E   ++ +E    G  +D   YT+L+
Sbjct: 504 INGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLI 539



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 197/443 (44%), Gaps = 46/443 (10%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y TMVH          A  LL  + +K G+ S+A+++ S++             AL+   
Sbjct: 290 YGTMVHGYCVRGELENAVKLLDEMAAK-GLESNATVYTSVI-------------ALL--- 332

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
            + G + DA++    +  H   + A     +I               + E+   G +   
Sbjct: 333 CNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADR 392

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
                L++ LC+ G++K+A  V  E   +GL    V++  LI+G+CK  N+ E FR+ + 
Sbjct: 393 VTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNE 452

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M G  + P+V TY+AL +GLCK+  +  A  LLHEMC +GL  N   + +LI+G CK G 
Sbjct: 453 MVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGN 512

Query: 250 IDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTI 280
           ++ A                             G+   A  ++ EM   G+ P   TY +
Sbjct: 513 LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNV 572

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L++GFC  G +E    + + M+++ +  + V + +L+  +C    +     + + M    
Sbjct: 573 LMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQE 632

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P++ TY ++I   CK  + K      +EM   G      +Y+AL+  L K  +   A 
Sbjct: 633 VAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEAR 692

Query: 401 MLLDTMLDLGVVPDDITYNILLE 423
           +  D M + G+  +   Y+  ++
Sbjct: 693 VFFDKMRNEGLTAEPDVYSFYMD 715



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 151/294 (51%), Gaps = 6/294 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++    +P+V  +  L   LCK+G ++ A  +  E   +GL     ++N+LING CK  
Sbjct: 452 EMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFG 511

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL++  R+ + ME +G R DVYTY+ LI+ LCK    D A  +L EM ++G+ P+   + 
Sbjct: 512 NLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYN 571

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C +GR++        +K+++ M    + P+ +TY  L+  +C + +++S  +I 
Sbjct: 572 VLMNGFCMSGRVE------GGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIY 625

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M  + +  +   +  LI G C+   + EA    +EM++ GL+   ++Y+ +I    K 
Sbjct: 626 KGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKK 685

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
                      +MR++G     + Y+  M+       L++   L D +++   V
Sbjct: 686 KKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVEASHV 739


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 230/483 (47%), Gaps = 88/483 (18%)

Query: 47  ASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRM 104
           A  L  R + LP +V D L+ +  D G LDDA++    +R+   R+P   R C  ++ R+
Sbjct: 123 ALALGPRRSALPSVV-DTLLSLLADHGLLDDAVRALARVRQ--LRVPPNTRTCNHILLRL 179

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            R        G    + D    P+V+ FN+++  LCKEG++ +A+ +F      G     
Sbjct: 180 ARNRQG----GLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDV 235

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN----------------- 207
           V++N+LI+G+ K  +L+E  +L S M  SG   DV TY+ALIN                 
Sbjct: 236 VTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGE 295

Query: 208 ------------------GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
                               CKE  + +A  L  +M  RG+ PN+  +T+L+DG CK GR
Sbjct: 296 MKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 355

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL------------------ 291
           +D      +A  ++DEM   GL P+ +TYT+++DG CKEG +                  
Sbjct: 356 LD------DAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKAN 409

Query: 292 -----------------ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
                            E ALD+  +M  +G+ELD   +  LI G C+  KV EA+ +L 
Sbjct: 410 ELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLH 469

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M   GL+P+   YT ++D   K G       LL ++   G  P V TY AL++GLCK G
Sbjct: 470 KMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAG 529

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            +  A    + M +LG+ P+   Y  L++G CK G+      L +E   KG+  D   YT
Sbjct: 530 SISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYT 589

Query: 452 SLV 454
           SL+
Sbjct: 590 SLI 592



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 174/322 (54%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V  + V++  LCKEGK+ +A  V     + G+ A  + + TLI+GH    
Sbjct: 365 EMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNN 424

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N +    L + M+  GM  DV  Y  LI GLCK+ ++D+A+ LLH+M   GL PN VI+T
Sbjct: 425 NSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYT 484

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T++D   K      AG   EA  ++ ++  +G  P+ +TY  L+DG CK G +  A+   
Sbjct: 485 TIMDALFK------AGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHF 538

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M + G++ +  A+TALI GFC+ G + +A  ++ EM+  G+  D   YT +ID + K 
Sbjct: 539 NKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQ 598

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            + +  F L  +M   G    +  Y   ++G C    ++ A  +L  M+  G+ PD   Y
Sbjct: 599 ANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVY 658

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
           N L+  + K GN E+   LQ+E
Sbjct: 659 NCLIRKYQKLGNMEEASSLQNE 680



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+  ++  +M  L K GK  +A  +  +    G     V++  LI+G CKA ++ E 
Sbjct: 475 GLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEA 534

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
               + M   G+ P+V  Y+ALI+G CK   L+ A  L++EM ++G++ + V++T+LIDG
Sbjct: 535 ISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDG 594

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K        ++++A  +  +M  +GL  D   YT  + GFC    ++ A  +  EMI 
Sbjct: 595 YMKQA------NLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIG 648

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            GI  D   +  LI  + + G + EA  +  EM  V
Sbjct: 649 TGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESV 684



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 127/278 (45%), Gaps = 20/278 (7%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL----------ETRGT--HL 57
           Y+T++H    +    +A DLL+ +   KGM    SL+ +++          E +     +
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQM-KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM 471

Query: 58  PGLVLDALMIVYVDL-------GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
            G  L    ++Y  +       G   +A+     +    F+        LID + +    
Sbjct: 472 AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSI 531

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           +  +  + ++ + G  P+V  +  L+   CK G +  A  + +E   +G+    V + +L
Sbjct: 532 SEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSL 591

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+G+ K  NL + F LK+ M  SG++ D+Y Y+  I+G C  N + +A  +L EM   G+
Sbjct: 592 IDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGI 651

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           TP+  ++  LI  + K G ++ A  ++   + V   CT
Sbjct: 652 TPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSCT 689



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN---GDTKTGFRLLKEMR 372
           L+S     G + +A R L  + ++ + P+  T   ++    +N   G  +  F LL    
Sbjct: 140 LLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLP--- 196

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
               +P V T+N +++ LCK G+L  A  L   M  +G  PD +TYN L++G+ K G+ E
Sbjct: 197 ----VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLE 252

Query: 433 DFDKLQSE---KGLVSDYACYTSLVSKSSKY 460
           + ++L SE    G  +D   Y +L++  SK+
Sbjct: 253 EVEQLVSEMRKSGCAADVVTYNALINCFSKF 283


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGF 116
           AL+  +     L++A++    +R+       RGC         L+D + + ++       
Sbjct: 62  ALIAAFARAKKLEEAMKLLEEMRE-------RGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
             ++++ G++P+V  FN L+   CK G + DA+ +      +G+    V+++ LI+G CK
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           ++   E   +   M+ SG+ PD +TYSALI+GLCK +++++AE +L  M   G TP+ V+
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 234

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++++I   CK+G+      + EA+K + EM     +PD +TY  ++DG CK G +  A  
Sbjct: 235 YSSIIHAFCKSGK------LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 288

Query: 297 IRKEMIKRGIEL-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           I  +M + G  L D V ++ +I+G C+   +VEA+++L  M K G  PD  TYT +ID  
Sbjct: 289 ILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 348

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G  +    LL+ M+  G  P V TY  L++GLCK  ++  A  +++ M + G  P+ 
Sbjct: 349 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNL 408

Query: 416 ITYNILLEGHCKHGNPEDFDKL 437
           +TYN ++ G C  G  ++  +L
Sbjct: 409 VTYNTMVNGLCVSGRIKEAQQL 430



 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 187/341 (54%), Gaps = 10/341 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P++  +NVL+  LCK   +  AQ V  +  + G     ++FN+L++G CK  
Sbjct: 82  EMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRG 141

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D+  +L  +M   GMRP+V TYSALI+GLCK  +  +A+ +L EM   G+TP+   ++
Sbjct: 142 NVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYS 201

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G CK  +I+      EA +++  M  +G  PD + Y+ ++  FCK G L  A    
Sbjct: 202 ALIHGLCKADKIE------EAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTL 255

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG-LKPDDATYTMVIDCFCK 357
           +EM K+    D V +  +I G C+ GK+ EA+ +L +M + G + PD  TY+ VI+  CK
Sbjct: 256 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCK 315

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           +       +LL  M   G  P V TY  +++GLCK G+L+ A  LL  M   G  P+ +T
Sbjct: 316 SDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 375

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           Y  L+ G CK    ++ +++  E    G   +   Y ++V+
Sbjct: 376 YTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVN 416



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 13/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G++P  +    ++  +   G +  A    D     G     V++  LI    +AK
Sbjct: 15  EMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFARAK 71

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L+E  +L   M   G  P++ TY+ L++ LCK + +  A+ ++ +M E G  PN + F 
Sbjct: 72  KLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFN 131

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +L+DG CK G +D      +ARK++  M   G+ P+ +TY+ L+DG CK      A ++ 
Sbjct: 132 SLVDGFCKRGNVD------DARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVL 185

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM   G+  D   ++ALI G C+  K+ EAE+MLR M   G  PD   Y+ +I  FCK+
Sbjct: 186 EEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKS 245

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG-VVPDDIT 417
           G      + L+EMR     P V TYN +++GLCK G++  A ++LD M + G V+PD +T
Sbjct: 246 GKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVT 305

Query: 418 YNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           Y+ ++ G CK     +  KL     + G   D   YT+++
Sbjct: 306 YSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 345



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 141/251 (56%), Gaps = 9/251 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P V V++ ++H  CK GK+ +AQ    E  K+      V++NT+I+G CK   + E 
Sbjct: 227 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 286

Query: 184 FRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +   M+ SG + PDV TYS +INGLCK + L +A+ LL  MC+ G  P+ V +TT+ID
Sbjct: 287 QVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIID 346

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK GR++      EA  ++  M   G  P+ +TYT L+ G CK   ++ A  + +EM 
Sbjct: 347 GLCKCGRLE------EAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 400

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREML--KVGLKPDDATYTMVIDCFCKNGD 360
             G   + V +  +++G C  G++ EA+++++ M   +    PD ATY  +++    +  
Sbjct: 401 NAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDL 460

Query: 361 TKTGFRLLKEM 371
            +   +LL++M
Sbjct: 461 VQEAEQLLEQM 471



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C A +L     L   M+ +G  PD +T++ +I  +     LD A   L  M   G  PN 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNV 57

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +T LI    +      A  ++EA K+++EM   G  P+ +TY +L+D  CK   + +A
Sbjct: 58  VTYTALIAAFAR------AKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 111

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            D+ K+MI+ G   + + F +L+ GFC+ G V +A ++L  M+  G++P+  TY+ +ID 
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK+        +L+EM++ G  P   TY+AL++GLCK  +++ A  +L  M   G  PD
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231

Query: 415 DITYNILLEGHCKHG 429
            + Y+ ++   CK G
Sbjct: 232 VVVYSSIIHAFCKSG 246


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 244/471 (51%), Gaps = 30/471 (6%)

Query: 1   PHFRLTLHAYSTMVHF-LVAH-----KMHSQARDLLHLIVSKKGMGSSASLF------AS 48
           P  RL  H   +  H  L AH     ++++ +R +L  +V+ +    +ASL       A 
Sbjct: 53  PADRLLSHPLPSTAHACLAAHLLARDRLYAHSRRVLSRLVALRRPHLAASLVDLLHRAAL 112

Query: 49  ILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMR 106
            L  R + L  +V D L+ V  D G LDDA++    +R+   R+P   R C  ++ R+ R
Sbjct: 113 ALGPRRSALASVV-DTLLSVLADRGLLDDAVRAVARVRE--LRVPPNTRTCNHILLRLAR 169

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
                +    + ++     +P+V+ FN+++  LCKEG++ +A+ +F    + G     V+
Sbjct: 170 DRSGRLVRRLFEQL----PAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVT 225

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           FN+LI+G+ K   LDE  +L   M  SG + DV TY+ALIN  CK  R++ A      M 
Sbjct: 226 FNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK 285

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
             G+  N V F+T +D  CK G +      +EA K+  +M   G+  ++ TYT L+DG C
Sbjct: 286 REGVMANVVTFSTFVDAFCKEGLV------REAMKLFAQMRVRGMALNEFTYTCLIDGTC 339

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K G L+ A+ +  EM+++G+ L+ V +T L+ G C+  KV EAE +LR M K G++ ++ 
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            YT +I     N +++    LL EM++ G    +  Y AL+ GLC   +L  A  LL  M
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 407 LDLGVVPDDITYNILLEGHCKHGN-PEDFDKLQS--EKGLVSDYACYTSLV 454
            + G+ P+ I Y  +++   K G  PE    LQ   + G   +   Y +L+
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALI 510



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 189/368 (51%), Gaps = 6/368 (1%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G + +A++ F  +R     +      CLID   +       +    E++  G   +V  +
Sbjct: 307 GLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTY 366

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            VL+  LCKE K+ +A+ V     K G+ A  + + TLI+GH   KN ++   L S M+ 
Sbjct: 367 TVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+  D+  Y ALI GLC  ++LD+A+ LL +M E GL PN +I+TT++D   K+G++  
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV-- 484

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                EA  ++ ++  +G  P+ ITY  L+DG CK G ++ A+    +M   G++ +  A
Sbjct: 485 ----PEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQA 540

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +TAL+ G C+ G + EA ++  EM+  G+  D   YT ++D + K G+    F L  +M 
Sbjct: 541 YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMI 600

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G    +  Y   ++G C    +  A  +   M+  G+ PD   YN L+  + K GN E
Sbjct: 601 DSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLE 660

Query: 433 DFDKLQSE 440
           +   LQ E
Sbjct: 661 EAISLQDE 668



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P+  ++  +M    K GK+ +A  +  +    G     +++  LI+G CKA ++D
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E     + M   G+ P+V  Y+AL++GLCK   L++A  L +EM  +G++ + V++T L+
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           DG+ K G +  A  +K   K++D    +GL  D   YT  + GFC    +  A ++  EM
Sbjct: 581 DGYLKQGNLHDAFALKA--KMID----SGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           I  GI  D   +  LIS + + G + EA  +  EM +V
Sbjct: 635 IGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 89/171 (52%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D G  P+V  +  L+  LCK G + +A  +F+E   +G
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V +  L++G+ K  NL + F LK+ M  SG++ D++ Y+  I+G C  N + +A 
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
            +  EM   G+ P+  ++  LI  + K G ++ A  +++  + V   CT+ 
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSCTDS 679


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 12/340 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           VF  +M   C++G +  A+  FDE  KRGL A  V++  LING C+A  L E  R+   M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G+  D  TY+ LI+G CK  ++ +A L+ ++M ++ +TPN V +T L DG CK G  
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG-- 474

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               D+  A +++ EMC+ GL  +  TY  L++G CK G+LE A+    +M + G++ D 
Sbjct: 475 ----DVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +T +I   C+  ++  A  +L+EML  G+KP   TY ++++ FC +G  + G RLL+ 
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M      P   TYN+LM   C    +K+   +   ML   VVP++ TYNIL++GHCK  N
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 431 PED---FDKLQSEKGL---VSDYACYTSLVSKSSKYRQKR 464
            ++   F     EKG     S Y     L++K  K+ + R
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 22/349 (6%)

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           LP+  L   L +  YG SPS    N ++ +L     + +A  +F E  ++       S+N
Sbjct: 208 LPSAPL--LLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEKN----TCSYN 257

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L+   C A  + +  +L   M      PDV TY  +++G C  + L+ A  LL EM  R
Sbjct: 258 ILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL  N V +T++I   C  G++       +A ++V++M  +G+  D   +T ++ GFC++
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVS------DAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           GDL +A +   EM KRG+  D V +TALI+G CR G++ EAER+L+EM   GL  D  TY
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T++ID +CK G     F +  +M      P V TY AL +GLCK G +  AN LL  M  
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            G+  +  TYN L+ G CK GN E   +      E GL  D   YT+++
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 181/357 (50%), Gaps = 35/357 (9%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+L+  LC  G+IKDA  +FDE          V++  +++G+C    L+   +L S M 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+  +   Y+++I  LC E ++ DA  ++ +M   G+  +  +FTT++ G C+ G + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 252 MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
            A                             G++KEA +++ EM   GL+ D +TYT+L+
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG+CK G +  A  +  +M+++ +  + V +TAL  G C+ G V  A  +L EM   GL+
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            +  TY  +I+  CK G+ +   R + +M   G  P V TY  ++  LC+  +L  A+ L
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
           L  MLD G+ P  +TYN+L+ G C  G  E   +L     EK +  +   Y SL+ +
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 183/405 (45%), Gaps = 29/405 (7%)

Query: 48  SILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           S +  RG  L  +   +++ +  D G + DA++    +  H   + A     ++    R 
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                   ++ E+   G +     +  L++ LC+ G++K+A+ V  E   +GL   AV++
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             LI+G+CK   + E F + + M    + P+V TY+AL +GLCK+  +  A  LLHEMC 
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAG----DMKEA------------------------ 259
           +GL  N   + +LI+G CK G ++ A     DM EA                        
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548

Query: 260 -RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
              ++ EM   G+ P  +TY +L++GFC  G +E    + + M+++ I  +   + +L+ 
Sbjct: 549 AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK 608

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            +C    +     + + ML   + P++ TY ++I   CK  + K       EM   G   
Sbjct: 609 QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRL 668

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +YNAL+  L K  +   A  L + M    +  +   YN  ++
Sbjct: 669 TASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYID 713



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 183/377 (48%), Gaps = 6/377 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           +KG  ++A  +   ++ RG    G+   AL+      G L +A +  + +      + A 
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LID   +    T     + +++    +P+V  +  L   LCK+G +  A  +  E 
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +GL     ++N+LING CKA NL++  R    M+ +G++PDVYTY+ +I  LC+   L
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A  LL EM ++G+ P  V +  L++G C +GR++        +++++ M    ++P+ 
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVE------GGKRLLEWMLEKNIHPNT 600

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+  +C E +++S  +I K M+ + +  +   +  LI G C+   + EA     E
Sbjct: 601 TTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSE 660

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M++ G +   ++Y  +I    K        RL ++MR +      + YN  ++       
Sbjct: 661 MIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDN 720

Query: 396 LKNANMLLDTMLDLGVV 412
           L++   L D ++++ +V
Sbjct: 721 LESTLALCDELVEVTLV 737


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 189/367 (51%), Gaps = 8/367 (2%)

Query: 65  LMIV-YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           LM+V Y  +G + D  +  + + +  + +    C  +I              ++ + +  
Sbjct: 233 LMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQM 292

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P++  F+ L++ LCK G IK A  + +E  ++G      +   LI+G CK    ++ 
Sbjct: 293 GLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKA 352

Query: 184 FRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           FRL   ++     +P+VYTY+ +ING CKE +L+ AE+LL  M E+GL PN   +T LID
Sbjct: 353 FRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLID 412

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           GHCK      AG+   A +++D M   G  P+  TY  ++DG CK+G    A  + +  +
Sbjct: 413 GHCK------AGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGL 466

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           K G+  D V +T LIS FCR     +A  +   M KVGL+PD  TY ++I  FC+    +
Sbjct: 467 KSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVE 526

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +L +E    G LP  ETY +++ G C+ G + +A      M D G  PD ITY  L+
Sbjct: 527 ESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALI 586

Query: 423 EGHCKHG 429
            G C   
Sbjct: 587 SGLCNES 593



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 184/398 (46%), Gaps = 10/398 (2%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V+  ++  + ++G L +A+     ++ H   + AR    +ID  +           + E+
Sbjct: 160 VMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEM 219

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD    P    + +++   C+ G+I D      +  +RG      +   +I+   +   +
Sbjct: 220 LDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFV 279

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +  F         G+ P++  +S+LINGLCK   +  A  +L EM  +G  PN    T L
Sbjct: 280 NRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTAL 339

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           IDG CK G  +     K  R  +  + ++   P+  TYT +++G+CKE  L  A  +   
Sbjct: 340 IDGLCKKGWTE-----KAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIR 394

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M ++G+  +   +T LI G C+ G    A  ++  M K G  P+  TY  +ID  CK G 
Sbjct: 395 MKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGR 454

Query: 361 TKTGFRLLKE-MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               ++LL+  ++S  H   V TY  L++  C+    K A  +   M  +G+ PD  TYN
Sbjct: 455 FPEAYKLLRRGLKSGLHADKV-TYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYN 513

Query: 420 ILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLV 454
           +L+   C+    E+ +KL  E    GL+     YTS++
Sbjct: 514 VLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMI 551



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 4/206 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G +KEA  +V EM  +GL         ++D     G ++ A  +  EM+ R +  D+ ++
Sbjct: 172 GKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSY 231

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G+CR G++ + +R L++M++ G   D+AT T++I  F + G     F   K+   
Sbjct: 232 KLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQ 291

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P +  +++L+NGLCK G +K A  +L+ M+  G  P+  T+  L++G CK G  E 
Sbjct: 292 MGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEK 351

Query: 434 ----FDKLQSEKGLVSDYACYTSLVS 455
               F KL        +   YT +++
Sbjct: 352 AFRLFLKLVRSDNYKPNVYTYTCMIN 377



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI    R       L  +  +   G  P ++ +NVL+   C++ K+++++ +F+E    G
Sbjct: 480 LISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLG 539

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T  ++ ++I G+C+  ++    +    M   G +PD  TY ALI+GLC E++LD+A 
Sbjct: 540 LLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEAC 599

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M + GL+P +V   TL   +CK G  D A  M    ++  ++    +N       
Sbjct: 600 QLYETMIDNGLSPCEVTRVTLAYEYCKQG--DSATAMIILERLEKKLWIRTVN------- 650

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            L+   C E  +  A     +++ + + +D +   A  + 
Sbjct: 651 TLIRKLCSEKKVGVAALFFHKLLDKDLNVDRITLAAFTTA 690



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 3/145 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           + F+ ++ DYG  P    +  L+  LC E K+ +A  +++     GL    V+  TL   
Sbjct: 564 IKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYE 623

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +CK  +         ++E    +  + T + LI  LC E ++  A L  H++ ++ L  +
Sbjct: 624 YCKQGDSATAM---IILERLEKKLWIRTVNTLIRKLCSEKKVGVAALFFHKLLDKDLNVD 680

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKE 258
            +          ++ +  +  D+ E
Sbjct: 681 RITLAAFTTACYESNKFALVSDLSE 705


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 12/340 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           VF  +M   C++G +  A+  FDE  KRGL A  V++  LING C+A  L E  R+   M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G+  D  TY+ LI+G CK  ++ +A L+ ++M ++ +TPN V +T L DG CK G  
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG-- 474

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               D+  A +++ EMC+ GL  +  TY  L++G CK G+LE A+    +M + G++ D 
Sbjct: 475 ----DVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +T +I   C+  ++  A  +L+EML  G+KP   TY ++++ FC +G  + G RLL+ 
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M      P   TYN+LM   C    +K+   +   ML   VVP++ TYNIL++GHCK  N
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 431 PED---FDKLQSEKGL---VSDYACYTSLVSKSSKYRQKR 464
            ++   F     EKG     S Y     L++K  K+ + R
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 22/349 (6%)

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           LP+  L   L +  YG SPS    N ++ +L     + +A  +F E  ++       S+N
Sbjct: 208 LPSAPL--LLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEKN----TCSYN 257

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L+   C A  + +  +L   M      PDV TY  +++G C  + L+ A  LL EM  R
Sbjct: 258 ILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL  N V +T++I   C  G++       +A ++V++M  +G+  D   +T ++ GFC++
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVS------DAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           GDL +A +   EM KRG+  D V +TALI+G CR G++ EAER+L+EM   GL  D  TY
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T++ID +CK G     F +  +M      P V TY AL +GLCK G +  AN LL  M  
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            G+  +  TYN L+ G CK GN E   +      E GL  D   YT+++
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537



 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 181/357 (50%), Gaps = 35/357 (9%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+L+  LC  G+IKDA  +FDE          V++  +++G+C    L+   +L S M 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+  +   Y+++I  LC E ++ DA  ++ +M   G+  +  +FTT++ G C+ G + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 252 MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
            A                             G++KEA +++ EM   GL+ D +TYT+L+
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG+CK G +  A  +  +M+++ +  + V +TAL  G C+ G V  A  +L EM   GL+
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            +  TY  +I+  CK G+ +   R + +M   G  P V TY  ++  LC+  +L  A+ L
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
           L  MLD G+ P  +TYN+L+ G C  G  E   +L     EK +  +   Y SL+ +
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 183/405 (45%), Gaps = 29/405 (7%)

Query: 48  SILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           S +  RG  L  +   +++ +  D G + DA++    +  H   + A     ++    R 
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                   ++ E+   G +     +  L++ LC+ G++K+A+ V  E   +GL   AV++
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             LI+G+CK   + E F + + M    + P+V TY+AL +GLCK+  +  A  LLHEMC 
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAG----DMKEA------------------------ 259
           +GL  N   + +LI+G CK G ++ A     DM EA                        
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548

Query: 260 -RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
              ++ EM   G+ P  +TY +L++GFC  G +E    + + M+++ I  +   + +L+ 
Sbjct: 549 AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK 608

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            +C    +     + + ML   + P++ TY ++I   CK  + K       EM   G   
Sbjct: 609 QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRL 668

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +YNAL+  L K  +   A  L + M    +  +   YN  ++
Sbjct: 669 TASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYID 713



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 183/377 (48%), Gaps = 6/377 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           +KG  ++A  +   ++ RG    G+   AL+      G L +A +  + +      + A 
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LID   +    T     + +++    +P+V  +  L   LCK+G +  A  +  E 
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +GL     ++N+LING CKA NL++  R    M+ +G++PDVYTY+ +I  LC+   L
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A  LL EM ++G+ P  V +  L++G C +GR++        +++++ M    ++P+ 
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVE------GGKRLLEWMLEKNIHPNT 600

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+  +C E +++S  +I K M+ + +  +   +  LI G C+   + EA     E
Sbjct: 601 TTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSE 660

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M++ G +   ++Y  +I    K        RL ++MR D      + YN  ++       
Sbjct: 661 MIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDN 720

Query: 396 LKNANMLLDTMLDLGVV 412
           L++   L D ++++ +V
Sbjct: 721 LESTLALCDELVEVTLV 737


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 244/471 (51%), Gaps = 30/471 (6%)

Query: 1   PHFRLTLHAYSTMVHF-LVAH-----KMHSQARDLLHLIVSKKGMGSSASLF------AS 48
           P  RL  H   +  H  L AH     ++++ +R +L  +V+ +    +ASL       A 
Sbjct: 53  PADRLLSHPLPSTAHACLAAHLLARDRLYAHSRRVLSRLVALRRPHLAASLVDLLHRAAL 112

Query: 49  ILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMR 106
            L  R + L  +V D L+ V  D G LDDA++    +R+   R+P   R C  ++ R+ R
Sbjct: 113 ALGPRRSALASVV-DTLLSVLADRGLLDDAVRAVARVRE--LRVPPNTRTCNHILLRLAR 169

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
                +    + ++     +P+V+ FN+++  LCKEG++ +A+ +F    + G     V+
Sbjct: 170 DRSGRLVRRLFEQL----PAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVT 225

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           FN+LI+G+ K   LDE  +L   M  SG + DV TY+ALIN  CK  R++ A      M 
Sbjct: 226 FNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK 285

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
             G+  N V F+T +D  CK G +      +EA K+  +M   G+  ++ TYT L+DG C
Sbjct: 286 REGVMANVVTFSTFVDAFCKEGLV------REAMKLFAQMRVRGMALNEFTYTCLIDGTC 339

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K G L+ A+ +  EM+++G+ L+ V +T L+ G C+  KV EAE +LR M K G++ ++ 
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            YT +I     N +++    LL EM++ G    +  Y AL+ GLC   +L  A  LL  M
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 407 LDLGVVPDDITYNILLEGHCKHGN-PEDFDKLQS--EKGLVSDYACYTSLV 454
            + G+ P+ I Y  +++   K G  PE    LQ   + G   +   Y +L+
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALI 510



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 190/368 (51%), Gaps = 6/368 (1%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G + +A++ F  +R     +      CLID   +       +    E++  G   +V  +
Sbjct: 307 GLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTY 366

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            VL+  LCKE K+ +A+ V     K G+ A  + + TLI+GH   KN ++   L S M+ 
Sbjct: 367 TVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+  D+  Y ALI GLC  ++LD+A+ LL +M E GL PN +I+TT++D   K+G++  
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPE 486

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A  M +  KI+D    +G  P+ ITY  L+DG CK G ++ A+    +M   G++ +  A
Sbjct: 487 AIAMLQ--KILD----SGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQA 540

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +TAL+ G C+ G + EA ++  EM+  G+  D   YT ++D + K G+    F L  +M 
Sbjct: 541 YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMI 600

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G    +  Y   ++G C    +  A  +   M+  G+ PD   YN L+  + K GN E
Sbjct: 601 DSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLE 660

Query: 433 DFDKLQSE 440
           +   LQ E
Sbjct: 661 EAISLQDE 668



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P+  ++  +M    K GK+ +A  +  +    G     +++  LI+G CKA ++D
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E     + M   G+ P+V  Y+AL++GLCK   L++A  L +EM  +G++ + V++T L+
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           DG+ K G +  A  +K   K++D    +GL  D   YT  + GFC    +  A ++  EM
Sbjct: 581 DGYLKQGNLHDAFALKA--KMID----SGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           I  GI  D   +  LIS + + G + EA  +  EM +V
Sbjct: 635 IGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 89/171 (52%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D G  P+V  +  L+  LCK G + +A  +F+E   +G
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V +  L++G+ K  NL + F LK+ M  SG++ D++ Y+  I+G C  N + +A 
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
            +  EM   G+ P+  ++  LI  + K G ++ A  +++  + V   CT+ 
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSCTDS 679


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/454 (31%), Positives = 231/454 (50%), Gaps = 30/454 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPGLVLDA 64
           L+ Y+ M++ L      S A  +L  ++ K G G S     S+L     G  +   V  A
Sbjct: 100 LYTYNIMINCLCRRSQLSFALAILGKMM-KLGYGPSIVTLNSLLNGFCHGNRISEAV--A 156

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+   V++G+  D +    L+   +    A     L++RM+                  G
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK----------------G 200

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P +  +  +++ LCK G+   A  + ++  K  + A  V ++T+I+  CK +++D+  
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L + M+  G+RPDV+TYS+LI+ LC   R  DA  LL +M ER + PN V F +LID  
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+      + EA K+ DEM    ++P+ +TY  L++GFC    L+ A  I   M+ +
Sbjct: 321 AKEGK------LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
               D V +  LI+GFC+  KVV+   + R+M + GL  +  TYT +I  F +  D    
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             + K+M SDG  P + TYN L++GLCK+G+L+ A ++ + +    + PD  TYNI+ EG
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            CK G  ED   L    S KG+  D   Y +++S
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 201/386 (52%), Gaps = 15/386 (3%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCL--IDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           LD+A+  F  +++   F       + L  I +M + +L  ++ G  +EIL  G S ++Y 
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDL-VISFGEKMEIL--GVSHNLYT 102

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N++++ LC+  ++  A  +  +  K G   + V+ N+L+NG C    + E   L   M 
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +PD  T++ L++GL + N+  +A  L+  M  +G  P+ V +  +I+G CK G  D
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           +A ++      +++M    +  D + Y+ ++D  CK   ++ AL++  EM  +GI  D  
Sbjct: 223 LALNL------LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVF 276

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +++LIS  C  G+  +A R+L +ML+  + P+  T+  +ID F K G      +L  EM
Sbjct: 277 TYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 336

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                 P + TYN+L+NG C H +L  A  +   M+    +PD +TYN L+ G CK    
Sbjct: 337 IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKV 396

Query: 432 EDFDKL---QSEKGLVSDYACYTSLV 454
            D  +L    S +GLV +   YT+L+
Sbjct: 397 VDGMELFRDMSRRGLVGNTVTYTTLI 422



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 203/433 (46%), Gaps = 28/433 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASI--LETRGTHLPGLVLDAL- 65
            ++T+VH L  H   S+A  L+  +V K       +  A I  L  RG   P L L+ L 
Sbjct: 172 TFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE--PDLALNLLN 229

Query: 66  ----------MIVYVDL-------GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
                     +++Y  +         +DDA+  F  +     R        LI  +    
Sbjct: 230 KMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 289

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
             +       ++L+   +P+V  FN L+    KEGK+ +A+ +FDE  +R +    V++N
Sbjct: 290 RWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           +LING C    LDE  ++ ++M      PDV TY+ LING CK  ++ D   L  +M  R
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL  N V +TTLI G  +      A D   A+ +  +M ++G++P+ +TY  LLDG CK 
Sbjct: 410 GLVGNTVTYTTLIHGFFQ------ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G LE A+ + + + K  +E D   +  +  G C+ GKV +   +   +   G+KPD   Y
Sbjct: 464 GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +I  FCK G  +  + L  +M+ DG LP   TYN L+    + G    +  L+  M  
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583

Query: 409 LGVVPDDITYNIL 421
                D  TY ++
Sbjct: 584 CRFAGDASTYGLV 596



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 179/392 (45%), Gaps = 40/392 (10%)

Query: 105 MRTNLPTVTL-GFYLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
           +R   P+  L G Y   L Y GY   +   N L+H      K+ +A  +F E  K     
Sbjct: 10  LRKASPSFCLRGIYFSGLSYDGYREKLSR-NALLHL-----KLDEAVDLFGEMVKSRPFP 63

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V F+ L++   K K  D        ME  G+  ++YTY+ +IN LC+ ++L  A  +L
Sbjct: 64  SIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAIL 123

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------------------------- 253
            +M + G  P+ V   +L++G C   RI  A                             
Sbjct: 124 GKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 183

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA  +V+ M   G  PD +TY  +++G CK G+ + AL++  +M K  IE D V +
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 243

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           + +I   C+   V +A  +  EM   G++PD  TY+ +I C C  G      RLL +M  
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE 303

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P V T+N+L++   K G+L  A  L D M+   + P+ +TYN L+ G C H   ++
Sbjct: 304 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 363

Query: 434 FDK---LQSEKGLVSDYACYTSLVSKSSKYRQ 462
             +   L   K  + D   Y +L++   K ++
Sbjct: 364 AQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 196/358 (54%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + R N     +    ++   G  P+   FN L++ LC EGKIK+A  +F+E  +RG
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRG 188

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +S+NT+ING CK  N      +   ME +G +PDV TY+ +I+ LCK+  ++DA 
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAM 248

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             L EM +RG+ PN   +  ++ G C      + G + EA ++  EM    + PD +T T
Sbjct: 249 EFLSEMLDRGIPPNVFTYNCMVHGFC------ILGQLNEATRLFKEMVGRDVMPDTVTLT 302

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+DG CKEG +  A  + + M ++G+E +   + AL+ G+C    + EA+++   M++ 
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQ 362

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P   +Y ++I+ FCK+        LL EM      P   TY+ LM GLC+ G+ K A
Sbjct: 363 GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEA 422

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             +   M   G++P+ +TY+ILL+G CKHG+ ++  KL     EK L  +   +T L+
Sbjct: 423 LNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILI 480



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 218/440 (49%), Gaps = 44/440 (10%)

Query: 20  HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDA 78
           H   S    L++ + ++  +  +  LF  ++  R  H P ++  + ++      G    A
Sbjct: 155 HPTASTFNALINGLCNEGKIKEAVELFNEMV--RRGHEPNVISYNTIINGLCKTGNTSMA 212

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           +  F+ + ++  +        +ID + +  L    + F  E+LD G  P+V+ +N ++H 
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG 272

Query: 139 -----------------------------------LCKEGKIKDAQMVFDEFGKRGLHAT 163
                                              LCKEG + +A++VF+   ++G+   
Sbjct: 273 FCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPN 332

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             ++N L++G+C  + ++E  ++  +M   G  P V++Y+ LING CK  R+D+A+ LL 
Sbjct: 333 ISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLA 392

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM  + L P+ V ++TL+ G C+ GR       KEA  I  EMC+ GL P+ +TY+ILLD
Sbjct: 393 EMYHKALNPDTVTYSTLMQGLCQFGRP------KEALNIFKEMCSYGLLPNLVTYSILLD 446

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFCK G L+ AL + K M ++ +E + V  T LI G    GK+  A+ +  ++   G++P
Sbjct: 447 GFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRP 506

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              TYT++I    K G +   + L ++M  DG LP   +YN ++ G  ++     A  L+
Sbjct: 507 TIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLI 566

Query: 404 DTMLDLGVVPDDITYNILLE 423
           D M+      +  T+ +LL+
Sbjct: 567 DEMVGKRFSANLSTFQMLLD 586



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 200/406 (49%), Gaps = 11/406 (2%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           G H      +AL+    + G + +A++ F  + +            +I+ + +T   ++ 
Sbjct: 153 GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMA 212

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +  + ++   G  P V  +N ++  LCK+  + DA     E   RG+     ++N +++G
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG 272

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C    L+E  RL   M G  + PD  T + L++GLCKE  + +A L+   M E+G+ PN
Sbjct: 273 FCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPN 332

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              +  L+DG+C      +   M EA+K+ + M   G  P   +Y IL++GFCK   ++ 
Sbjct: 333 ISTYNALMDGYC------LQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDE 386

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  EM  + +  D V ++ L+ G C+ G+  EA  + +EM   GL P+  TY++++D
Sbjct: 387 AKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLD 446

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            FCK+G      +LLK M+     P +  +  L+ G+   G+L+ A  L   +   G+ P
Sbjct: 447 GFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRP 506

Query: 414 DDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
              TY ++++G  K G  ++    F K++ + G + +   Y  ++ 
Sbjct: 507 TIRTYTVMIKGLLKEGLSDEAYDLFRKMEDD-GFLPNSCSYNVMIQ 551



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 165/332 (49%), Gaps = 9/332 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PSV  F   +    K+ +      + ++    G+     S N LIN  C+  ++D    +
Sbjct: 86  PSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSI 145

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+ P   T++ALINGLC E ++ +A  L +EM  RG  PN + + T+I+G CK
Sbjct: 146 LGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCK 205

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G   MA D      +  +M  NG  PD +TY  ++D  CK+  +  A++   EM+ RGI
Sbjct: 206 TGNTSMAVD------VFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGI 259

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   +  ++ GFC  G++ EA R+ +EM+   + PD  T T+++D  CK G       
Sbjct: 260 PPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARL 319

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + M   G  P + TYNALM+G C    +  A  + + M+  G  P   +YNIL+ G C
Sbjct: 320 VFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFC 379

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           K    ++   L +E   K L  D   Y++L+ 
Sbjct: 380 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQ 411



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 142/282 (50%), Gaps = 6/282 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           I DA   F    +     +   F   +    K K       L + M+  G+  +VY+ + 
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN LC+ N +D A  +L +M + G+ P    F  LI+G C  G+I      KEA ++ +
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKI------KEAVELFN 182

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   G  P+ I+Y  +++G CK G+   A+D+ K+M + G + D V +  +I   C+  
Sbjct: 183 EMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDR 242

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            V +A   L EML  G+ P+  TY  ++  FC  G      RL KEM     +P   T  
Sbjct: 243 LVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLT 302

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L++GLCK G +  A ++ +TM + GV P+  TYN L++G+C
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYC 344



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ AL     M++         F   +  F +  +      +  +M   G+  +  +  
Sbjct: 68  SIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLN 127

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I+C C+         +L +M   G  P   T+NAL+NGLC  G++K A  L + M+  
Sbjct: 128 VLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRR 187

Query: 410 GVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
           G  P+ I+YN ++ G CK GN     D  K   + G   D   Y +++    K R
Sbjct: 188 GHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDR 242


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 209/395 (52%), Gaps = 22/395 (5%)

Query: 83  RLLRKHYFR-----IPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           R  R H  R     +P++GC         +I      N        + E+L  G  P + 
Sbjct: 158 RTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIM 217

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            FN L+H LC++G +++++ + ++  KRG+     + N  I G C+   L+E  RL   +
Sbjct: 218 AFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGV 277

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
            G G+ PDV TY+ LI GLCK  ++ +AE  L +M   G  P+   + ++IDG+CK    
Sbjct: 278 -GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCK---- 332

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G M+ A +I+ +    G  PD+ TY  L++G C++GD++ A+++  E +++G++ + 
Sbjct: 333 --LGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNL 390

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V    L+ G  + G +++A +++ EM + G  PD  TY +VI+  CK G       L+ +
Sbjct: 391 VLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVID 450

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             + GHLP V T+N L++G CK  +L NA  ++D M + GV PD ITYN +L G CK G 
Sbjct: 451 AIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGK 510

Query: 431 PEDF---DKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            ED     KL  EKG V +   Y  L     K R+
Sbjct: 511 YEDVMGTFKLMMEKGCVPNIITYNILTESFCKARK 545



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 175/336 (52%), Gaps = 10/336 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P    +  L++ LC++G I  A  VF+E  ++GL    V  NTL+ G  +   + + 
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L + M  +G  PD++TY+ +INGLCK   + DA+ L+ +   +G  P+   F TLIDG
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDG 469

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D       A +IVD M  +G++PD ITY  +L+G CK G  E  +   K M++
Sbjct: 470 YCKKLKLD------NAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMME 523

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  L   FC+  KV EA  ++ EM   GL PD   +  ++  FC NGD   
Sbjct: 524 KGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDG 583

Query: 364 GFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            ++L K +         + TYN ++N       +  A  L + M + G  PD  TY +++
Sbjct: 584 AYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMI 643

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           +G CK GN      F  ++ EKGL+     +  +++
Sbjct: 644 DGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLN 679



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 176/347 (50%), Gaps = 9/347 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +D AI  F    +   +     C  L+  + +  L    L    E+ + G SP ++ +
Sbjct: 369 GDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTY 428

Query: 133 NVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           N++++ LCK G + DA  +V D   K G      +FNTLI+G+CK   LD    +   M 
Sbjct: 429 NLVINGLCKIGCVSDADNLVIDAIAK-GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMW 487

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ PDV TY++++NGLCK  + +D       M E+G  PN + +  L +  CK     
Sbjct: 488 NHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCK----- 542

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A  ++EA  +++EM   GL PD + +  L+ GFC  GDL+ A  + K + ++      +
Sbjct: 543 -ARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTI 601

Query: 312 A-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           A +  +I+ F     +  AE++  +M + G  PD  TY ++ID FCK G+  +G+  L  
Sbjct: 602 ATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLV 661

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
               G +P++ T+  ++N LC   ++  A  ++  M+  G+VP+ + 
Sbjct: 662 KIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVN 708



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 184/364 (50%), Gaps = 26/364 (7%)

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTL---GF--------YLEILD---YGYSPSV 129
           L RK + +   R    ++ R +  NL TV +   GF         + +LD    G +P V
Sbjct: 226 LCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDV 285

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK---AKNLDEGFRL 186
             +N L+  LCK  K+ +A+    +    G      ++N++I+G+CK    +N D+  R 
Sbjct: 286 ITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRD 345

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            +     G  PD  TY +LINGLC++  +D A  + +E  E+GL PN V+  TL+ G  +
Sbjct: 346 GAF---KGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQ 402

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G I       +A K+++EM  NG +PD  TY ++++G CK G +  A ++  + I +G 
Sbjct: 403 QGLI------LQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH 456

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   F  LI G+C+  K+  A  ++  M   G+ PD  TY  +++  CK G  +    
Sbjct: 457 LPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMG 516

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             K M   G +P + TYN L    CK  +++ A  L++ M + G+ PD + +  L++G C
Sbjct: 517 TFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFC 576

Query: 427 KHGN 430
            +G+
Sbjct: 577 DNGD 580



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 180/367 (49%), Gaps = 35/367 (9%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +D G    VY+    M    ++GKI++A  VF+         +  S+N ++N   + +  
Sbjct: 70  IDNGLLEGVYI--GAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYF 127

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+  ++   M   G+ PDVYT++  +   C+ +R   A  LL+ M  +G   + V + T+
Sbjct: 128 DQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTV 187

Query: 241 IDG-HCKNGRID-----------------MA-----------GDMKEARKIVDEMCTNGL 271
           I G + +N R++                 MA           G ++E+ ++++++   G+
Sbjct: 188 IGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGV 247

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
           +P+  T  I + GFC+   L  A+ +  + + RG+  D + +  LI G C+  KVVEAE 
Sbjct: 248 SPNLFTVNIFIQGFCQRAMLNEAIRLL-DGVGRGLTPDVITYNTLICGLCKNFKVVEAEH 306

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            LR+M+  G +PD  TY  +ID +CK G  +   ++L++    G +P   TY +L+NGLC
Sbjct: 307 YLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLC 366

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYA 448
           + G +  A  + +  ++ G+ P+ +  N L++G  + G      KL    SE G   D  
Sbjct: 367 QDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIW 426

Query: 449 CYTSLVS 455
            Y  +++
Sbjct: 427 TYNLVIN 433



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 7/271 (2%)

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
             SV +  G +  + TY  +I  L      +  E +L E   R    N ++    I    
Sbjct: 27  FNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAET--RMNIDNGLLEGVYIGAMR 84

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             GR    G ++EA  + + M      P   +Y  +++   +    + A  +   M  +G
Sbjct: 85  NYGR---KGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKG 141

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D   FT  +  FCR  +   A R+L  M   G +     Y  VI  F +        
Sbjct: 142 IVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAH 201

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L +EM   G  P +  +N L++ LC+ G ++ +  LL+ +L  GV P+  T NI ++G 
Sbjct: 202 ELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGF 261

Query: 426 CKHGNPEDFDKLQS--EKGLVSDYACYTSLV 454
           C+     +  +L     +GL  D   Y +L+
Sbjct: 262 CQRAMLNEAIRLLDGVGRGLTPDVITYNTLI 292



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            Y +S ++  +N++++    +  +  A+ +F++  + G    + ++  +I+G CK  N++
Sbjct: 594 QYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNIN 653

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
            G+    V    G+ P + T+  ++N LC + R+ +A  ++H M  +G+ P   +  T+ 
Sbjct: 654 SGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPE--VVNTIF 711

Query: 242 DGHCKNGRIDMAGDMKE--ARKIVDEMCTNGLNPDKITYTILLDG 284
           +            D KE  A KIV E      +     Y IL DG
Sbjct: 712 E-----------ADKKEVAAPKIVVENLMKKGHITYFAYEILHDG 745


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 198/386 (51%), Gaps = 53/386 (13%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+   G +P++  +N +++ LCK   +     +F+E  +RG H   V++NTLI+  C
Sbjct: 24  FRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLC 83

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM---------- 225
           KA +L+E  RL   M   G  P+V TYS LINGLCK  R+D+A  L+ EM          
Sbjct: 84  KAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPN 143

Query: 226 -----------CERGLT------------------PNDVIFTTLIDGHCKNGRIDMAGDM 256
                      C++ +T                  P+ V F+TLIDG CK G+ID     
Sbjct: 144 IITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQID----- 198

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            EA  + D+M   G  P+ ITY  L++G CK   +E A  + + M+ +G+  D + ++ L
Sbjct: 199 -EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 257

Query: 317 ISGFCRGGKVVEAERMLREMLKVG-----LKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           +  FC+  +V EA  +L  M   G     L PD  T+ ++I   CK G+ +    L +EM
Sbjct: 258 VDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEM 317

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            +    P V T+ AL++GLCK GQ++ A  +LD M +LGV P+ +TYN L+ G CK G  
Sbjct: 318 VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 377

Query: 432 EDFDKLQSE---KGLVSDYACYTSLV 454
           E+  +   E    G V D   Y SLV
Sbjct: 378 EEACQFLEEMVSSGCVPDSITYGSLV 403



 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 166/310 (53%), Gaps = 11/310 (3%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP    F+ L+  LCK G+I +A  VFD+    G     +++N L+NG CKA  ++    
Sbjct: 178 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 237

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN-----DVIFTTL 240
           +   M   G+ PDV TYS L++  CK +R+D+A  LLH M  RG TPN      V F  L
Sbjct: 238 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNIL 297

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G CK      AG+ ++A  + +EM    L PD +T+  L+DG CK G +E+A DI   
Sbjct: 298 IAGACK------AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDL 351

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G+  + V + AL+ G C+ G++ EA + L EM+  G  PD  TY  ++   C+   
Sbjct: 352 MGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASR 411

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
           T    +L+ E++S G  P   TYN L++GL K G+ + A  +L+ M+  G  PD  T+  
Sbjct: 412 TDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA 471

Query: 421 LLEGHCKHGN 430
              G  + GN
Sbjct: 472 CFSGLHRSGN 481



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLK-EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           A Y +V+   C+ GDT     + + EM  DG  P + TYN ++NGLCK   L     L +
Sbjct: 2   ADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFE 61

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
            +++ G  PD +TYN L++  CK G+ E+  +L    S +G V +   Y+ L++
Sbjct: 62  ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLIN 115


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 12/340 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           VF  +M   C++G +  A+  FDE  KRGL A  V++  LING C+A  L E  R+   M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G+  D  TY+ LI+G CK  ++ +A L+ ++M ++ +TPN V +T L DG CK G  
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG-- 474

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               D+  A +++ EMC+ GL  +  TY  L++G CK G+LE A+    +M + G++ D 
Sbjct: 475 ----DVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +T +I   C+  ++  A  +L+EML  G+KP   TY ++++ FC +G  + G RLL+ 
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M      P   TYN+LM   C    +K+   +   ML   VVP++ TYNIL++GHCK  N
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 431 PED---FDKLQSEKGL---VSDYACYTSLVSKSSKYRQKR 464
            ++   F     EKG     S Y     L++K  K+ + R
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 22/349 (6%)

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           LP+  L   L +  YG SPS    N ++ +L     + +A  +F E  ++       S+N
Sbjct: 208 LPSAPL--LLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEKN----TCSYN 257

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L+   C A  + +  +L   M      PDV TY  +++G C  + L+ A  LL EM  R
Sbjct: 258 ILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL  N V +T++I   C  G++       +A ++V++M  +G+  D   +T ++ GFC++
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVS------DAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           GDL +A +   EM KRG+  D V +TALI+G CR G++ EAER+L+EM   GL  D  TY
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T++ID +CK G     F +  +M      P V TY AL +GLCK G +  AN LL  M  
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            G+  +  TYN L+ G CK GN E   +      E GL  D   YT+++
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 181/357 (50%), Gaps = 35/357 (9%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+L+  LC  G+IKDA  +FDE          V++  +++G+C    L+   +L S M 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+  +   Y+++I  LC E ++ DA  ++ +M   G+  +  +FTT++ G C+ G + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 252 MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
            A                             G++KEA +++ EM   GL+ D +TYT+L+
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG+CK G +  A  +  +M+++ +  + V +TAL  G C+ G V  A  +L EM   GL+
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            +  TY  +I+  CK G+ +   R + +M   G  P V TY  ++  LC+  +L  A+ L
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
           L  MLD G+ P  +TYN+L+ G C  G  E   +L     EK +  +   Y SL+ +
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 183/405 (45%), Gaps = 29/405 (7%)

Query: 48  SILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           S +  RG  L  +   +++ +  D G + DA++    +  H   + A     ++    R 
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                   ++ E+   G +     +  L++ LC+ G++K+A+ V  E   +GL   AV++
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             LI+G+CK   + E F + + M    + P+V TY+AL +GLCK+  +  A  LLHEMC 
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS 488

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAG----DMKEA------------------------ 259
           +GL  N   + +LI+G CK G ++ A     DM EA                        
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548

Query: 260 -RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
              ++ EM   G+ P  +TY +L++GFC  G +E    + + M+++ I  +   + +L+ 
Sbjct: 549 AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK 608

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            +C    +     + + ML   + P++ TY ++I   CK  + K       EM   G   
Sbjct: 609 QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRL 668

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +YNAL+  L K  +   A  L + M    +  +   YN  ++
Sbjct: 669 TASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYID 713



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 183/377 (48%), Gaps = 6/377 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           +KG  ++A  +   ++ RG    G+   AL+      G L +A +  + +      + A 
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LID   +    T     + +++    +P+V  +  L   LCK+G +  A  +  E 
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +GL     ++N+LING CKA NL++  R    M+ +G++PDVYTY+ +I  LC+   L
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A  LL EM ++G+ P  V +  L++G C +GR++        +++++ M    ++P+ 
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVE------GGKRLLEWMLEKNIHPNT 600

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+  +C E +++S  +I K M+ + +  +   +  LI G C+   + EA     E
Sbjct: 601 TTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSE 660

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M++ G +   ++Y  +I    K        RL ++MR +      + YN  ++       
Sbjct: 661 MIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDN 720

Query: 396 LKNANMLLDTMLDLGVV 412
           L++   L D ++++ +V
Sbjct: 721 LESTLALCDELVEVTLV 737


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 186/334 (55%), Gaps = 12/334 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKD---AQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +G SP+V  +N L+   CK G+I     A  +  E   +G+    V++N LI+G CK +N
Sbjct: 184 WGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDEN 243

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +    R+   M+  G+RP+V TY+ LINGLC + ++D+A  L  +M    L PN V    
Sbjct: 244 VSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNV 303

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI+G CKN  ++      EA  + ++M   G++P+ +TYT L+D +CK+G +E A  +  
Sbjct: 304 LINGFCKNKTVN------EAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYN 357

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            MI RGI  +   +  LI+G CR G V  A  ++ EM+   L  D  TY ++ID  CK G
Sbjct: 358 MMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKG 417

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +++   +LL EM   G  P+  TYN LM+G C+ G L+ A ++   M   G   + +T+N
Sbjct: 418 ESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHN 477

Query: 420 ILLEGHCKHGNPEDFDKLQS---EKGLVSDYACY 450
           +L++G C  G  ED + L +   E+GLV +   Y
Sbjct: 478 VLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511



 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 185/339 (54%), Gaps = 12/339 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           DYG+  S+   N L+  L KE +  D + V+ E  KR +    +SFN ++NG CK   L+
Sbjct: 113 DYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLN 172

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD---AELLLHEMCERGLTPNDVIFT 238
               +   M+  G+ P+V TY+ LI+G CK  R+     A+ +L EM  +G+ PN+V + 
Sbjct: 173 RAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYN 232

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDG CK+  +        A ++  EM   GL P+ +TY IL++G C +G ++ A+ +R
Sbjct: 233 ILIDGFCKDENVS------GAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALR 286

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M+   +E + V    LI+GFC+   V EA  +  +M K G+ P+  TYT +ID +CK+
Sbjct: 287 DQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKD 346

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +  F L   M   G  P V TYN L+ GLC+ G +K A  L++ M+   +  D +TY
Sbjct: 347 GRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTY 406

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           NIL++  CK G      KL     EKGL   +  Y +L+
Sbjct: 407 NILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLM 445



 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 231/432 (53%), Gaps = 14/432 (3%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH-LPGLV 61
             LT    +++ H     K +S+ R  L   V  +   S +++F +I  +  +  +  ++
Sbjct: 32  LELTFRILNSLAH----TKKYSKIRSFLDKFVKYEKDYSVSAIFHAISMSGDSFCVNSIL 87

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            D L++ +V    +    + F+    + F++    C  L+  +++ +        Y E++
Sbjct: 88  ADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMI 147

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
                 +V  FN++++ LCK GK+  A  V ++    G+    +++NTLI+G+CK   + 
Sbjct: 148 KRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIG 207

Query: 182 EGFRLKSV---MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           + ++  ++   M   G+ P+  TY+ LI+G CK+  +  A  +  EM  +GL PN V + 
Sbjct: 208 KMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYN 267

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G C +G++D      EA  + D+M ++ L P+ +T+ +L++GFCK   +  A+++ 
Sbjct: 268 ILINGLCSDGKVD------EAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLF 321

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M K+G++ + + +T LI  +C+ G++ +A  +   M+  G+ P+ +TY  +I   C+ 
Sbjct: 322 NDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRK 381

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD K    L+ EM S      V TYN L++ LCK G+ + A  LLD M + G+ P  +TY
Sbjct: 382 GDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTY 441

Query: 419 NILLEGHCKHGN 430
           N L++G+C+ GN
Sbjct: 442 NTLMDGYCREGN 453



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 179/317 (56%), Gaps = 6/317 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+   +N+L+   CK+  +  A  VF E  ++GL    V++N LING C   
Sbjct: 218 EMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDG 277

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE   L+  M  S + P+V T++ LING CK   +++A  L ++M ++G+ PN + +T
Sbjct: 278 KVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYT 337

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLID +CK+GR      M++A  + + M   G+ P+  TY  L+ G C++GD+++A  + 
Sbjct: 338 TLIDAYCKDGR------MEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLM 391

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM+ + +  D V +  LI   C+ G+  +A ++L EM + GL P   TY  ++D +C+ 
Sbjct: 392 NEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCRE 451

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    +   M   G    V T+N L+ G C  G+L++AN LL+ ML+ G+VP+  TY
Sbjct: 452 GNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511

Query: 419 NILLEGHCKHGNPEDFD 435
            I+ E   + G   D +
Sbjct: 512 EIIKEEMMEKGFVPDIE 528



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L++     K +  + +LF   +E +G     +    L+  Y   G ++DA   + ++   
Sbjct: 304 LINGFCKNKTVNEAINLFND-MEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDR 362

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                     CLI  + R            E++    S  V  +N+L+  LCK+G+ + A
Sbjct: 363 GIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKA 422

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             + DE  ++GL+ + V++NTL++G+C+  NL     +++ ME  G + +V T++ LI G
Sbjct: 423 VKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKG 482

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            C + RL+DA  LL+EM ERGL PN   +  +
Sbjct: 483 FCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 6/215 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +++AI  F  + K      A     LID   +          Y  ++D G  P V  +N 
Sbjct: 314 VNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNC 373

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+  LC++G +K A+ + +E   + L A  V++N LI+  CK     +  +L   M   G
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKG 433

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + P   TY+ L++G C+E  L  A ++   M  +G   N V    LI G C  GR++   
Sbjct: 434 LNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLE--- 490

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
              +A  +++EM   GL P++ TY I+ +   ++G
Sbjct: 491 ---DANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 235/452 (51%), Gaps = 24/452 (5%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLF------ASILETRGTHLPGLVLDALMIV 68
           H L   ++++ +R +L  +V+ +    +ASL       A  L  R + L  +V D L+ V
Sbjct: 73  HLLARDRLYAHSRRVLSRLVALRRPHLAASLVDLLHRAALALGPRRSALASVV-DTLLSV 131

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             D G LDDA++    +R+   R+P   R C  ++ R+ R     +    + ++     +
Sbjct: 132 LADRGLLDDAVRAVARVRE--LRVPPNTRTCNHILLRLARDRSGRLVRRLFEQL----PA 185

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ FN+++  LCKEG++ +A+ +F    + G     V+FN+LI+G+ K   LDE  +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  SG + DV TY+ALIN  CK  R++ A      M   G+  N V F+T +D  CK
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G +      +EA K+  +M   G+  ++ TYT L+DG CK G L+ A+ +  EM+++G+
Sbjct: 306 EGLV------REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV 359

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            L+ V +T L+ G C+  KV EAE +LR M K G++ ++  YT +I     N +++    
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG 419

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL EM++ G    +  Y AL+ GLC   +L  A  LL  M + G+ P+ I Y  +++   
Sbjct: 420 LLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACF 479

Query: 427 KHGN-PEDFDKLQS--EKGLVSDYACYTSLVS 455
           K G  PE    LQ   + G   +  C    V 
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQ 511



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 157/296 (53%), Gaps = 16/296 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G + +A++ F  +R     +      CLID   +       +    E++  G   +V  +
Sbjct: 307 GLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTY 366

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            VL+  LCKE K+ +A+ V     K G+ A  + + TLI+GH   KN ++   L S M+ 
Sbjct: 367 TVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+  D+  Y ALI GLC  ++LD+A+ LL +M E GL PN +I+TT++D   K+G++  
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPE 486

Query: 253 A----------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           A                G + EA ++ +EM   G++ DK+ YT LLDG+ K+G+L  A  
Sbjct: 487 AIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFA 546

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           ++ +MI  G++LD   +T  ISGFC    + EA  +  EM+  G+ PD A Y  +I
Sbjct: 547 LKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 602


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 204/387 (52%), Gaps = 11/387 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G  D A + F+ +         R    LI    R       L  Y E+   G  P +  F
Sbjct: 179 GMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSF 238

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L+    + GK+  A     E    GL    V +  +I G C+A  + +  R++  M G
Sbjct: 239 SCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 298

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G  PDV TY+ L+NGLCKE RL DAE LL+EM ERG+ P+   FTTLI G+C  G++D 
Sbjct: 299 CGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLD- 357

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                +A ++ D M    L PD +TY  L+DG C++GDL+ A D+  +M  R I  ++V 
Sbjct: 358 -----KALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT 412

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           ++ LI   C  G+V +A   L EM+  G+ P+  TY  +I  +C++G+   G + L++M 
Sbjct: 413 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 472

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            +   P + TYN L++G  K  ++ +A  LL+ M    V PD +TYN+L+ G   HGN +
Sbjct: 473 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQ 532

Query: 433 D----FDKLQSEKGLVSDYACYTSLVS 455
           +    F+K+ + KG+  D   Y S+++
Sbjct: 533 EAGWIFEKMCA-KGIEPDRYTYMSMIN 558



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 217/471 (46%), Gaps = 42/471 (8%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           +S++       + +S+L +  T  P  V D L+  Y       +A + FRL+  H   IP
Sbjct: 1   MSRRRGACRREIVSSLLGSSPTPQP-RVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIP 59

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
           A     L+  + R   P +    Y  +       + Y  N+++H  CK  +      V  
Sbjct: 60  AAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVIS 119

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E  KR +    V+ N +++   +A + +    L   M   G++P + TY++++ GLC+  
Sbjct: 120 EMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSG 179

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------- 253
             D A  +  EM + G+ P+   FT LI G C+ G I+ A                    
Sbjct: 180 MWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFS 239

Query: 254 ---------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                    G M  A   + EM   GL PD + YT+++ GFC+ G +  AL +R EM+  
Sbjct: 240 CLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGC 299

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   D V +  L++G C+  ++++AE +L EM + G+ PD  T+T +I  +C  G     
Sbjct: 300 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 359

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +L   M +    P + TYN L++G+C+ G L  AN L D M    + P+ +TY+IL++ 
Sbjct: 360 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSL---------VSKSSKYRQK 463
           HC+ G  ED      E   KG++ +   Y S+         VSK  K+ QK
Sbjct: 420 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQK 470



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P V  +N L++ LCKE ++ DA+ + +E  +RG+     +F TLI+G+C   
Sbjct: 295 EMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 354

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD+  +L   M    +RPD+ TY+ LI+G+C++  LD A  L  +M  R + PN V ++
Sbjct: 355 KLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYS 414

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID HC+ G+++      +A   +DEM   G+ P+ +TY  ++ G+C+ G++       
Sbjct: 415 ILIDSHCEKGQVE------DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 468

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+   +  D + +  LI G+ +  K+ +A ++L  M K  ++PD  TY M+I+ F  +
Sbjct: 469 QKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVH 528

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           G+ +    + ++M + G  P   TY +++NG    G  K A  L D ML  G
Sbjct: 529 GNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 133/265 (50%), Gaps = 29/265 (10%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   E+ + G  P +  F  L+H  C EGK+  A  +FD    + L    V++NTLI+G 
Sbjct: 326 GLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGM 385

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C+  +LD+   L   M    + P+  TYS LI+  C++ +++DA   L EM  +G+ PN 
Sbjct: 386 CRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNI 445

Query: 235 VIFTTLIDGHCKNGRID------------------------MAGDMKE-----ARKIVDE 265
           + + ++I G+C++G +                         + G +KE     A K+++ 
Sbjct: 446 MTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNM 505

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M    + PD +TY +L++GF   G+++ A  I ++M  +GIE D   + ++I+G    G 
Sbjct: 506 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGN 565

Query: 326 VVEAERMLREMLKVGLKPDDATYTM 350
             EA ++  EML+ G +   A  T+
Sbjct: 566 SKEAFQLHDEMLQRGKEKRRAAGTV 590


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 203/385 (52%), Gaps = 11/385 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
            D A + FR + +       R    LI    R       + FY E+   G +P V  F+ 
Sbjct: 243 FDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSC 302

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+      GK+  A     E    GL    V +  +I G C+A ++ E  R++  M G G
Sbjct: 303 LIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLG 362

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TY+ L+NGLCK++RL DAE LL+EM ERG+TP+   FTTLI G+C++G      
Sbjct: 363 CLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDG------ 416

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           + ++A ++ D +    L PD + Y  L+DG C++GDL  A ++  +M  R I  ++V ++
Sbjct: 417 NFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYS 476

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI   C  G+V EA   L EM+  G  P+  TY  +I  +C++G+ K G + L++M  D
Sbjct: 477 ILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQD 536

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED- 433
             LP + T+N L++G  K   +  A  + + M    V PD +TYN+++ G  + GN E+ 
Sbjct: 537 NILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEA 596

Query: 434 ---FDKLQSEKGLVSDYACYTSLVS 455
              F K+ +  G+  D   Y SL++
Sbjct: 597 GRVFKKMGA-SGIEPDRYTYMSLIN 620



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 225/464 (48%), Gaps = 36/464 (7%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83
           S+ + LL L +S++   S   + +S+L +  T  P  V D L+  Y       +A + FR
Sbjct: 54  SECQSLL-LRMSRRRGASRREIVSSLLASSPTPQPQ-VFDLLIRTYTQSRKPREAFEAFR 111

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           LL  H   +PA     L+  + R   P +    Y  +L      + Y  N+++H  CK  
Sbjct: 112 LLLDHRVPVPASASNALLAALSRAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSL 171

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +   A  V  E  KR +    V+ N LI+   +A ++D    L   M   G++P + T++
Sbjct: 172 EFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFN 231

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
           +++ GLCK  R D A+ +   M +  + P+   F  LI G C+ G ++ A          
Sbjct: 232 SVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQR 291

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              G M  A   + EM   GL PD + YT+++ GFC+ G +  A
Sbjct: 292 GVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L +R EM+  G   D V +  L++G C+  ++++AE +L EM + G+ PD  T+T +I  
Sbjct: 352 LRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHG 411

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +C++G+ +   +L   +      P V  YN+L++G+C+ G L  AN L D M    + P+
Sbjct: 412 YCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPN 471

Query: 415 DITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            +TY+IL++ HC+ G  E+     D++ S KG + +   Y S++
Sbjct: 472 HVTYSILIDSHCEKGQVEEAFGFLDEMVS-KGNLPNIMTYNSII 514



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 190/393 (48%), Gaps = 34/393 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R       +     + + G  P +  FN ++  LCK  +   A+ VF    +  
Sbjct: 198 LIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCS 257

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     SFN LI G C+   ++E  +    M+  G+ PDV ++S LI       ++D A 
Sbjct: 258 VAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAA 317

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNG--------RIDMAG----------------- 254
             L EM   GL P+ VI+T +I G C+ G        R +M G                 
Sbjct: 318 AYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGL 377

Query: 255 ----DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
                + +A ++++EM   G+ PD  T+T L+ G+C++G+ E AL +   ++ + +  D 
Sbjct: 378 CKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDV 437

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           VA+ +LI G CR G + +A  +  +M    + P+  TY+++ID  C+ G  +  F  L E
Sbjct: 438 VAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDE 497

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK--- 427
           M S G+LP + TYN+++ G C+ G +K     L  M+   ++PD IT+N L+ G+ K   
Sbjct: 498 MVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEEN 557

Query: 428 -HGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
            HG    F+ ++ E  +  D   Y  +++  S+
Sbjct: 558 MHGAFNVFNIMEKEM-VQPDAVTYNMIINGFSE 589



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 56/108 (51%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  FN L+H   KE  +  A  VF+   K  +   AV++N +ING  +  N++E  R+
Sbjct: 540 PDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRV 599

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
              M  SG+ PD YTY +LING        +A  L  EM  RG  P+D
Sbjct: 600 FKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPDD 647


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 230/481 (47%), Gaps = 35/481 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH----LP 58
           F+  +  +ST++H L      S+A DL H +     +  +  +     E R       L 
Sbjct: 143 FQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLD 202

Query: 59  GLVLDALMIVYVDLGFL-------DDAIQCFRLLRK----HYFRIPARGCRCLIDRMMRT 107
            +V D L    +  G +        D +    LLRK     + +        +ID + + 
Sbjct: 203 RMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKD 262

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
              +     Y E+ + G  P ++ +N ++   C  G+  +AQ +  E  +R ++   V++
Sbjct: 263 GRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTY 322

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + LIN + K +   E   L   M   G+ P+  TY+++I+G CK+NRLD AE + + M  
Sbjct: 323 SALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMAT 382

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           +G +P+   F TLIDG+C   RID      +  +++ EM   GL  D  TY  L+ GFC 
Sbjct: 383 KGCSPDVFTFNTLIDGYCGAKRID------DGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-------- 339
            GDL +ALD+ ++MI  G+  D V    L+ G C  GK+ +A  M + M K         
Sbjct: 437 VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASR 496

Query: 340 ---GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G++PD  TY ++I      G       L KEM   G +P   TY++++NGLCK  +L
Sbjct: 497 PFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRL 556

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A  + D+M      PD +T+N L+ G+CK G  +D  +L  E   +G+V+D   Y +L
Sbjct: 557 DEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITL 616

Query: 454 V 454
           +
Sbjct: 617 I 617



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 176/343 (51%), Gaps = 17/343 (4%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ID    +   +       E+L+   +P+V  ++ L++   KE K  +A+ ++DE   R
Sbjct: 289 CMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPR 348

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    +++N++I+G CK   LD    +  VM   G  PDV+T++ LI+G C   R+DD 
Sbjct: 349 GIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDG 408

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LLHEM E GL  +   + TLI G C      + GD+  A  +  +M ++G+ PD +T 
Sbjct: 409 TELLHEMTETGLVADTTTYNTLIHGFC------LVGDLNAALDLSQQMISSGVCPDIVTC 462

Query: 279 TILLDGFCKEGDLESALDIRKEMIK-----------RGIELDNVAFTALISGFCRGGKVV 327
             LLDG C  G L+ AL++ K M K            G+E D   +  LISG    GK +
Sbjct: 463 NTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFL 522

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EAE + +EM   G+ P+  TY+ +I+  CK        ++   M S    P V T+N L+
Sbjct: 523 EAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLV 582

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           +G CK G++ +   L   M   G+V D ITY  L+ G  K GN
Sbjct: 583 SGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGN 625



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 178/344 (51%), Gaps = 21/344 (6%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  F  LM+ LC+EG++ +A  + D   + GL    +++ T+++G CK  +      L
Sbjct: 176 PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNL 235

Query: 187 -KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            + + E S ++P+V  YSA+I+GL K+ R  DA  L  EM E+G+ P+   +  +IDG C
Sbjct: 236 LRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFC 295

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            +GR        EA++++ EM    +NP+ +TY+ L++ + KE     A ++  EM+ RG
Sbjct: 296 SSGR------WSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRG 349

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  + + + ++I GFC+  ++  AE M   M   G  PD  T+  +ID +C       G 
Sbjct: 350 IIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGT 409

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL EM   G +    TYN L++G C  G L  A  L   M+  GV PD +T N LL+G 
Sbjct: 410 ELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 469

Query: 426 CKHGNPED----FDKLQSEK----------GLVSDYACYTSLVS 455
           C +G  +D    F  +Q  K          G+  D   Y  L+S
Sbjct: 470 CDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILIS 513



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 187/358 (52%), Gaps = 12/358 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  ++R   P + +  Y ++        VY FN+L+   C   K+  A   F +  K G
Sbjct: 83  LMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLG 142

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V+F+TL++G C    + E   L   M     RP+V T++ L+NGLC+E R+ +A 
Sbjct: 143 FQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAV 198

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  M E GL PN + + T++DG CK G  D    +   RK+ +EM  + + P+ + Y+
Sbjct: 199 ALLDRMVEDGLQPNQITYGTIVDGMCKIG--DTVSALNLLRKM-EEM--SHIKPNVVIYS 253

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++DG  K+G    A ++  EM ++GI  D   +  +I GFC  G+  EA+R+L+EML+ 
Sbjct: 254 AIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLER 313

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + P+  TY+ +I+ + K         L  EM   G +P   TYN++++G CK  +L  A
Sbjct: 314 KINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAA 373

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             +   M   G  PD  T+N L++G+C     +D  +L    +E GLV+D   Y +L+
Sbjct: 374 EHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLI 431



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 164/339 (48%), Gaps = 29/339 (8%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           ++DA  +F +  +     + + FN L+    + +  D    L   ME   +  DVY+++ 
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------- 253
           LI   C  ++L  A     ++ + G  P+ V F+TL+ G C   R+  A           
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPN 177

Query: 254 --------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                         G + EA  ++D M  +GL P++ITY  ++DG CK GD  SAL++ +
Sbjct: 178 VVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLR 237

Query: 300 EMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +M +   I+ + V ++A+I G  + G+  +A  +  EM + G+ PD  TY  +ID FC +
Sbjct: 238 KMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSS 297

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      RLL+EM      P V TY+AL+N   K  +   A  L D ML  G++P+ ITY
Sbjct: 298 GRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITY 357

Query: 419 NILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
           N +++G CK       E    + + KG   D   + +L+
Sbjct: 358 NSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLI 396



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 52/295 (17%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP V+ FN L+   C   +I D   +  E  + GL A   ++NTLI+G C   +L+  
Sbjct: 384 GCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAA 443

Query: 184 FRLKSVMEGSGM----------------------------------------------RP 197
             L   M  SG+                                               P
Sbjct: 444 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEP 503

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           DV TY+ LI+GL  E +  +AE L  EM  RG+ PN + ++++I+G CK  R+D      
Sbjct: 504 DVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLD------ 557

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA ++ D M +   +PD +T+  L+ G+CK G ++  L++  EM +RGI  D + +  LI
Sbjct: 558 EATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLI 617

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
            GF + G +  A  + +EM+  G+ PD  T   ++       + K    +L++++
Sbjct: 618 HGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 195/358 (54%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + R N    ++    ++   G  P    FN L++ LC EGKIK+A  +F+E  KRG
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +S+ T+ING CK  N      +   ME +G +P+V TYS +I+ LCK+  ++DA 
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAM 253

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             L EM ERG+ PN   + +++ G C  G+++      EA ++  EM    + P+ +T+T
Sbjct: 254 EFLSEMVERGIPPNVFTYNSIVHGFCNLGQLN------EATRLFKEMVGRDVMPNTVTFT 307

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+DG CKEG +  A  + + M ++G+E D   + AL+ G+C    + EA+++   M++ 
Sbjct: 308 ILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRK 367

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P   +Y ++I+ +CK+        LL EM      P   TY+ LM GLC+ G+ K A
Sbjct: 368 GCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEA 427

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             L   M   G  P+ +TY ILL+G CKHG+ ++  KL     EK L  +   YT L+
Sbjct: 428 LNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILI 485



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 174/307 (56%), Gaps = 6/307 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E++     P+   F +L+  LCKEG + +A++VF+   ++G+     ++N L++G+C 
Sbjct: 291 FKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCL 350

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            + ++E  ++  +M   G  P  ++Y+ LING CK  R+D+A+ LL EM  + L P+ V 
Sbjct: 351 QRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVT 410

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++TL+ G C+ GR       KEA  +  EMC+ G +P+ +TY ILLDGFCK G L+ AL 
Sbjct: 411 YSTLMQGLCQLGRP------KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + K M ++ +E + V +T LI G    GK+  A+ +  ++   G +PD  TYT++I    
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLL 524

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G +   + L ++M  DG LP   +YN ++ G  ++     A  L+D M+      +  
Sbjct: 525 KEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLS 584

Query: 417 TYNILLE 423
           T+ +LL+
Sbjct: 585 TFQMLLD 591



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 224/457 (49%), Gaps = 20/457 (4%)

Query: 10  YSTMVH-------FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           YST+V        F V H ++S    L++ +     +  S S+   + +  G H   +  
Sbjct: 109 YSTVVSLCNQMDLFRVTHNVYS-LNILINCLCRLNHVDFSVSVLGKMFKL-GIHPDAITF 166

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL+    + G + +A++ F  + K            +I+ + +T   ++ +  + ++  
Sbjct: 167 NALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQ 226

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P+V  ++ ++  LCK+  + DA     E  +RG+     ++N++++G C    L+E
Sbjct: 227 NGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNE 286

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M G  + P+  T++ L++GLCKE  + +A L+   M E+G+ P+   +  L+D
Sbjct: 287 ATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMD 346

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+C      +   M EA+K+ + M   G  P   +Y IL++G+CK   ++ A  +  EM 
Sbjct: 347 GYC------LQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMY 400

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            + +  D V ++ L+ G C+ G+  EA  + +EM   G  P+  TY +++D FCK+G   
Sbjct: 401 HKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLD 460

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +LLK M+     P +  Y  L+ G+   G+L+ A  L   +   G  PD  TY +++
Sbjct: 461 EALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMI 520

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           +G  K G  ++    F K++ + G + +   Y  ++ 
Sbjct: 521 KGLLKEGLSDEAYDLFRKMEDD-GFLPNSCSYNVMIQ 556



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 185/351 (52%), Gaps = 6/351 (1%)

Query: 78  AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
           A+  F+ + ++  +        +ID + +  L    + F  E+++ G  P+V+ +N ++H
Sbjct: 217 AVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVH 276

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197
             C  G++ +A  +F E   R +    V+F  L++G CK   + E   +   M   G+ P
Sbjct: 277 GFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEP 336

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           D+ TY+AL++G C +  +++A+ +   M  +G  P    +  LI+G+CK+ R+D      
Sbjct: 337 DISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMD------ 390

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA+ ++ EM    LNPD +TY+ L+ G C+ G  + AL++ KEM   G   + V +  L+
Sbjct: 391 EAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILL 450

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            GFC+ G + EA ++L+ M +  L+P+   YT++I+     G  +    L  ++  DG  
Sbjct: 451 DGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTR 510

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           P + TY  ++ GL K G    A  L   M D G +P+  +YN++++G  ++
Sbjct: 511 PDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQN 561



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 6/282 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   F    +     + V F   +    K K       L + M+   +  +VY+ + 
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN LC+ N +D +  +L +M + G+ P+ + F  LI+G C  G+I      KEA ++ +
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKI------KEAVELFN 187

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   G  P+ I+YT +++G CK G+   A+D+ K+M + G + + V ++ +I   C+  
Sbjct: 188 EMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDR 247

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            V +A   L EM++ G+ P+  TY  ++  FC  G      RL KEM     +P   T+ 
Sbjct: 248 LVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFT 307

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L++GLCK G +  A ++ +TM + GV PD  TYN L++G+C
Sbjct: 308 ILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYC 349



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           RP V  +   +    K+ +      L ++M    +T N      LI+  C+   +D +  
Sbjct: 90  RPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFS-- 147

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
                 ++ +M   G++PD IT+  L++G C EG ++ A+++  EM+KRG E + +++T 
Sbjct: 148 ----VSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTT 203

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I+G C+ G    A  + ++M + G KP+  TY+ +ID  CK+         L EM   G
Sbjct: 204 VINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERG 263

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
             P V TYN++++G C  GQL  A  L   M+   V+P+ +T+ IL++G CK G   +  
Sbjct: 264 IPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEAR 323

Query: 434 --FDKLQSEKGLVSDYACYTSLV 454
             F+ + +EKG+  D + Y +L+
Sbjct: 324 LVFETM-TEKGVEPDISTYNALM 345



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 117/283 (41%), Gaps = 41/283 (14%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+GM S A L    +  +G        +ALM  Y     +++A + F ++ +      A 
Sbjct: 315 KEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAH 374

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+   ++           E+     +P    ++ LM  LC+ G+ K+A  +F E 
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVME----------------------- 191
              G H   V++  L++G CK  +LDE  +L KS+ E                       
Sbjct: 435 CSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKL 494

Query: 192 -----------GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
                      G G RPD+ TY+ +I GL KE   D+A  L  +M + G  PN   +  +
Sbjct: 495 EVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVM 554

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           I G  +N       D   A +++DEM     + +  T+ +LLD
Sbjct: 555 IQGFLQN------QDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGF 116
           AL+  +     L++A++    +R+       RGC         L+D + + ++       
Sbjct: 184 ALIAAFARAKKLEEAMKLLEEMRE-------RGCPPNLVTYNVLVDALCKLSMVGAAQDV 236

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
             ++++ G++P+V  FN L+   CK G + DA+ +      +G+    V+++ LI+G CK
Sbjct: 237 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 296

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           ++   E   +   M+  G+ PD +TYSALI+GLCK +++++AE +L  M   G TP+ V+
Sbjct: 297 SQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 356

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++++I   CK+G+      + EA+K + EM     +PD +TY  ++DG CK G +  A  
Sbjct: 357 YSSIIHAFCKSGK------LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 410

Query: 297 IRKEMIKRGIEL-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           I ++M + G  L D V ++ +I+G C+   +VEA+++L  M K G  PD  TYT +ID  
Sbjct: 411 ILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 470

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G  +    LL+ M+  G  P V TY  L++GLCK  ++  A  +++ M + G  P+ 
Sbjct: 471 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNL 530

Query: 416 ITYNILLEGHCKHGNPEDFDKL 437
           +TYN ++ G C  G  ++  +L
Sbjct: 531 VTYNTMVNGLCVSGRIKEAQQL 552



 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 145/486 (29%), Positives = 236/486 (48%), Gaps = 49/486 (10%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLL---------------HLIVSKKGMGSSASL 45
           P F  T  ++++++  LV  K H +A DL                ++++S  G  ++  L
Sbjct: 71  PGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVIS--GFCNAGDL 128

Query: 46  FASILETRGTHLPGLVLDA-----LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC--- 97
            A++         G   DA     ++    + G LD A+   R +          GC   
Sbjct: 129 HAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM----------GCDPN 178

Query: 98  ----RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 LI    R       +    E+ + G  P++  +NVL+  LCK   +  AQ V  
Sbjct: 179 VVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK 238

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           +  + G     ++FN+L++G CK  N+D+  +L  +M   GMRP+V TYSALI+GLCK  
Sbjct: 239 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 298

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           +  +A+ +L EM  RG+TP+   ++ LI G CK  +I+      EA +++  M  +G  P
Sbjct: 299 KFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIE------EAEQMLRRMAGSGCTP 352

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D + Y+ ++  FCK G L  A    +EM K+    D V +  +I G C+ GK+ EA+ +L
Sbjct: 353 DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 412

Query: 334 REMLKVG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            +M + G + PD  TY+ VI+  CK+       +LL  M   G  P V TY  +++GLCK
Sbjct: 413 EQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCK 472

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G+L+ A  LL  M   G  P+ +TY  L+ G CK    ++ +++  E    G   +   
Sbjct: 473 CGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT 532

Query: 450 YTSLVS 455
           Y ++V+
Sbjct: 533 YNTMVN 538



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 143/253 (56%), Gaps = 9/253 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P V V++ ++H  CK GK+ +AQ    E  K+      V++NT+I+G CK   + E 
Sbjct: 349 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 408

Query: 184 FRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +   M+ SG + PDV TYS +INGLCK + L +A+ LL  MC+ G  P+ V +TT+ID
Sbjct: 409 QVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIID 468

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK GR++      EA  ++  M   G  P+ +TYT L+ G CK   ++ A  + +EM 
Sbjct: 469 GLCKCGRLE------EAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 522

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREML--KVGLKPDDATYTMVIDCFCKNGD 360
             G   + V +  +++G C  G++ EA+++++ M   +    PD ATY  +++    +  
Sbjct: 523 NAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDL 582

Query: 361 TKTGFRLLKEMRS 373
            +   +LL++M+S
Sbjct: 583 VQEAEQLLEQMKS 595


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 181/329 (55%), Gaps = 8/329 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L F  +++  G+ P VY +  ++H LC E ++ +A+   +E   R L    V++  LI+G
Sbjct: 31  LIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDG 90

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK   +DE   L S M    + P   TY++LI+GLCK  R  +A  LL EM   G  P+
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              +TTLI G CK+ + D      +A ++ +++   G  PD +TY+ L+DG CKEG L+ 
Sbjct: 150 IFTYTTLITGFCKSKKSD------DALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKE 203

Query: 294 ALDIRKEMIKRGIELDN-VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           A+D+   MIK G  + N V + +LISGFCR GK+ EA  +L  M + G  PD  TYT ++
Sbjct: 204 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + FCK       + LL +M   G  P V T+ +LM+GLC+  +L +A  +L  M      
Sbjct: 264 NGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCS 323

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEK 441
           P   TYN +L+G+C+    E+  K   E+
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFMLEE 352



 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 162/297 (54%), Gaps = 11/297 (3%)

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           A  V++ +LI G CK K L++       M   G  PDVYTY+A+I+ LC ENRL +A   
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF 68

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L EM  R LTPN V +T LIDG CK GR+D      EA  ++ +M      P  +TY  L
Sbjct: 69  LEEMANRNLTPNVVTYTVLIDGLCKGGRVD------EAVALLSKM-RKKCVPTAVTYNSL 121

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G CK      A D+ +EM+  G   D   +T LI+GFC+  K  +A R+  +++  G 
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEM-RSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           +PD  TY+ +ID  CK G  K    L   M +S   +P   TYN+L++G C+ G++  A 
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAM 241

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYTSLV 454
            LL+ M + G  PD +TY  L+ G CK    +D +D L   + KGL  D   +TSL+
Sbjct: 242 NLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 192/375 (51%), Gaps = 39/375 (10%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+ +   +P+V  + VL+  LCK G++ +A  +  +  K+ +  TAV++N+LI+G C
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLC 126

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA+   E + L   M  SG  PD++TY+ LI G CK  + DDA  +  ++  RG  P+ V
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186

Query: 236 IFTTLIDGHCKNGRIDMA------------------------------GDMKEARKIVDE 265
            ++ LIDG CK GR+  A                              G M EA  +++ 
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   G +PD +TYT L++GFCK   L+ A D+  +M ++G+  D V FT+L+ G CR  +
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENR 306

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR-LLKEMRSDGHLPAVETYN 384
           + +A  +L EM +    P   TY  ++D +C+    +   + +L+EM      P V ++N
Sbjct: 307 LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP---PNVVSFN 363

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSE 440
            ++ GLCK  +   A  L++        PD + Y  +++G C+    ++    + K+  E
Sbjct: 364 IMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEE 423

Query: 441 KGLVSDYACYTSLVS 455
            G + +   Y++LV+
Sbjct: 424 PGCLPNSITYSTLVT 438



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 175/330 (53%), Gaps = 22/330 (6%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLIN 172
           L  + +++  G+ P V  ++ L+  LCKEG++K+A  +F    K G      V++N+LI+
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   +DE   L   M  +G  PDV TY+ L+NG CK  RLDDA  LL++M  +GLTP
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 289

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V FT+L+DG C+  R      + +A  I+ EM     +P   TY  +LDG+C+   LE
Sbjct: 290 DVVTFTSLMDGLCRENR------LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLE 343

Query: 293 SALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
            A   RK M++   E+D     V+F  +I G C+  +  EA  ++ E  +    PD   Y
Sbjct: 344 EA---RKFMLE---EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           T VID  C+        R+ ++M  + G LP   TY+ L+ GLC  G L  A   ++   
Sbjct: 398 TTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK-- 455

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             G VP+  TYN+L++   K    ED  +L
Sbjct: 456 --GCVPNIGTYNLLIDAFRKANRDEDAREL 483



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 199/415 (47%), Gaps = 47/415 (11%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T   Y++++  L   +  S+A DLL  +V                        G + D  
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLEEMV----------------------YSGCIPDIF 151

Query: 66  MIVYVDLGFL-----DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
               +  GF      DDA++ F  L    FR       CLID + +       +  +  +
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 121 LDYGYS-PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +  G   P+   +N L+   C+ GK+ +A  + +   + G     V++ TL+NG CK   
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD+ + L + M   G+ PDV T+++L++GLC+ENRL DA  +L EM  +  +P    + T
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 240 LIDGHCKNGRIDMAGDMKEARK-IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++DG+C+      A  ++EARK +++EM      P+ +++ I++ G CK      A+++ 
Sbjct: 332 ILDGYCR------ANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELV 382

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDATYTMVIDCFCK 357
           +E  +R    D V +T +I G CR  KV EA R+ R+ML + G  P+  TY+ ++   C 
Sbjct: 383 EEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCN 442

Query: 358 NG--DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            G  D   G+         G +P + TYN L++   K  + ++A  LLD M+  G
Sbjct: 443 AGMLDRARGY------IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 6/191 (3%)

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           TN  + D +TYT L+ G CK   LE AL    +M+ +G   D   +TA+I   C   ++ 
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA + L EM    L P+  TYT++ID  CK G       LL +MR    +P   TYN+L+
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKC-VPTAVTYNSLI 122

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGL 443
           +GLCK  +   A  LL+ M+  G +PD  TY  L+ G CK    +D    F++L + +G 
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA-RGF 181

Query: 444 VSDYACYTSLV 454
             D   Y+ L+
Sbjct: 182 RPDVVTYSCLI 192


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 204/387 (52%), Gaps = 11/387 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G  D A + F+ +         R    LI    R       L  Y E+   G  P +  F
Sbjct: 240 GMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSF 299

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L+    + GK+  A     E    GL    V +  +I G C+A  + +  R++  M G
Sbjct: 300 SCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 359

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G  PDV TY+ L+NGLCKE RL DAE LL+EM ERG+ P+   FTTLI G+C  G++D 
Sbjct: 360 CGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLD- 418

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                +A ++ D M    L PD +TY  L+DG C++GDL+ A D+  +M  R I  ++V 
Sbjct: 419 -----KALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT 473

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           ++ LI   C  G+V +A   L EM+  G+ P+  TY  +I  +C++G+   G + L++M 
Sbjct: 474 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 533

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            +   P + TYN L++G  K  ++ +A  LL+ M    V PD +TYN+L+ G   HGN +
Sbjct: 534 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQ 593

Query: 433 D----FDKLQSEKGLVSDYACYTSLVS 455
           +    F+K+ + KG+  D   Y S+++
Sbjct: 594 EAGWIFEKMCA-KGIEPDRYTYMSMIN 619



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 223/481 (46%), Gaps = 43/481 (8%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83
           S+ + LL L +S++       + +S+L +  T  P  V D L+  Y       +A + FR
Sbjct: 53  SECQSLL-LRMSRRRGACRREIVSSLLGSSPTPQP-RVFDLLIRTYTQSRKPREAFEAFR 110

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           L+  H   IPA     L+  + R   P +    Y  +       + Y  N+++H  CK  
Sbjct: 111 LILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKAL 170

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +      V  E  KR +    V+ N +++   +A + +    L   M   G++P + TY+
Sbjct: 171 EFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYN 230

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
           +++ GLC+    D A  +  EM + G+ P+   FT LI G C+ G I+ A          
Sbjct: 231 SVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 290

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              G M  A   + EM   GL PD + YT+++ GFC+ G +  A
Sbjct: 291 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 350

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L +R EM+  G   D V +  L++G C+  ++++AE +L EM + G+ PD  T+T +I  
Sbjct: 351 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 410

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +C  G      +L   M +    P + TYN L++G+C+ G L  AN L D M    + P+
Sbjct: 411 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN 470

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL---------VSKSSKYRQ 462
            +TY+IL++ HC+ G  ED      E   KG++ +   Y S+         VSK  K+ Q
Sbjct: 471 HVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQ 530

Query: 463 K 463
           K
Sbjct: 531 K 531



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 6/297 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P V  +N L++ LCKE ++ DA+ + +E  +RG+     +F TLI+G+C   
Sbjct: 356 EMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 415

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD+  +L   M    +RPD+ TY+ LI+G+C++  LD A  L  +M  R + PN V ++
Sbjct: 416 KLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYS 475

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID HC+ G+++      +A   +DEM   G+ P+ +TY  ++ G+C+ G++       
Sbjct: 476 ILIDSHCEKGQVE------DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 529

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+   +  D + +  LI G+ +  K+ +A ++L  M K  ++PD  TY M+I+ F  +
Sbjct: 530 QKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVH 589

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           G+ +    + ++M + G  P   TY +++NG    G  K A  L D ML  G  PDD
Sbjct: 590 GNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 646


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 181/329 (55%), Gaps = 8/329 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L F  +++  G+ P VY +  ++H LC E ++ +A+   +E   R L    V++  LI+G
Sbjct: 31  LIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDG 90

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK   +DE   L S M    + P   TY++LI+GLCK  R  +A  LL EM   G  P+
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              +TTLI G CK+ + D      +A ++ +++   G  PD +TY+ L+DG CKEG L+ 
Sbjct: 150 IFTYTTLITGFCKSKKSD------DALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKE 203

Query: 294 ALDIRKEMIKRGIELDN-VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           A+D+   MIK G  + N V + +LISGFCR GK+ EA  +L  M + G  PD  TYT ++
Sbjct: 204 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + FCK       + LL +M   G  P V T+ +LM+GLC+  +L +A  +L  M      
Sbjct: 264 NGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCS 323

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEK 441
           P   TYN +L+G+C+    E+  K   E+
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFMLEE 352



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 163/297 (54%), Gaps = 11/297 (3%)

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           A  V++ +LI G CK K L++       M   G  PDVYTY+A+I+ LC ENRL +A   
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF 68

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L EM  R LTPN V +T LIDG CK GR+D      EA  ++ +M    + P  +TY  L
Sbjct: 69  LEEMANRNLTPNVVTYTVLIDGLCKGGRVD------EAVALLSKMRKKCV-PTAVTYNSL 121

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G CK      A D+ +EM+  G   D   +T LI+GFC+  K  +A R+  +++  G 
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEM-RSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           +PD  TY+ +ID  CK G  K    L   M +S   +P   TYN+L++G C+ G++  A 
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAM 241

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYTSLV 454
            LL+ M + G  PD +TY  L+ G CK    +D +D L   + KGL  D   +TSL+
Sbjct: 242 NLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 192/375 (51%), Gaps = 39/375 (10%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+ +   +P+V  + VL+  LCK G++ +A  +  +  K+ +  TAV++N+LI+G C
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLC 126

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA+   E + L   M  SG  PD++TY+ LI G CK  + DDA  +  ++  RG  P+ V
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186

Query: 236 IFTTLIDGHCKNGRIDMA------------------------------GDMKEARKIVDE 265
            ++ LIDG CK GR+  A                              G M EA  +++ 
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   G +PD +TYT L++GFCK   L+ A D+  +M ++G+  D V FT+L+ G CR  +
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENR 306

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR-LLKEMRSDGHLPAVETYN 384
           + +A  +L EM +    P   TY  ++D +C+    +   + +L+EM      P V ++N
Sbjct: 307 LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP---PNVVSFN 363

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSE 440
            ++ GLCK  +   A  L++        PD + Y  +++G C+    ++    + K+  E
Sbjct: 364 IMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEE 423

Query: 441 KGLVSDYACYTSLVS 455
            G + +   Y++L++
Sbjct: 424 PGCLPNSITYSTLIT 438



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 175/330 (53%), Gaps = 22/330 (6%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLIN 172
           L  + +++  G+ P V  ++ L+  LCKEG++K+A  +F    K G      V++N+LI+
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   +DE   L   M  +G  PDV TY+ L+NG CK  RLDDA  LL++M  +GLTP
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 289

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V FT+L+DG C+  R      + +A  I+ EM     +P   TY  +LDG+C+   LE
Sbjct: 290 DVVTFTSLMDGLCRENR------LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLE 343

Query: 293 SALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
            A   RK M++   E+D     V+F  +I G C+  +  EA  ++ E  +    PD   Y
Sbjct: 344 EA---RKFMLE---EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           T VID  C+        R+ ++M  + G LP   TY+ L+ GLC  G L  A   ++   
Sbjct: 398 TTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK-- 455

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             G VP+  TYN+L++   K    ED  +L
Sbjct: 456 --GCVPNIGTYNLLIDAFRKANRDEDAREL 483



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 199/415 (47%), Gaps = 47/415 (11%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T   Y++++  L   +  S+A DLL  +V                        G + D  
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLEEMV----------------------YSGCIPDIF 151

Query: 66  MIVYVDLGFL-----DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
               +  GF      DDA++ F  L    FR       CLID + +       +  +  +
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 121 LDYGYS-PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +  G   P+   +N L+   C+ GK+ +A  + +   + G     V++ TL+NG CK   
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD+ + L + M   G+ PDV T+++L++GLC+ENRL DA  +L EM  +  +P    + T
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 240 LIDGHCKNGRIDMAGDMKEARK-IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++DG+C+      A  ++EARK +++EM      P+ +++ I++ G CK      A+++ 
Sbjct: 332 ILDGYCR------ANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELV 382

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDATYTMVIDCFCK 357
           +E  +R    D V +T +I G CR  KV EA R+ R+ML + G  P+  TY+ +I   C 
Sbjct: 383 EEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCN 442

Query: 358 NG--DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            G  D   G+         G +P + TYN L++   K  + ++A  LLD M+  G
Sbjct: 443 AGMLDRARGY------IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 6/191 (3%)

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           TN  + D +TYT L+ G CK   LE AL    +M+ +G   D   +TA+I   C   ++ 
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA + L EM    L P+  TYT++ID  CK G       LL +MR    +P   TYN+L+
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLI 122

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGL 443
           +GLCK  +   A  LL+ M+  G +PD  TY  L+ G CK    +D    F++L + +G 
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA-RGF 181

Query: 444 VSDYACYTSLV 454
             D   Y+ L+
Sbjct: 182 RPDVVTYSCLI 192


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/413 (31%), Positives = 215/413 (52%), Gaps = 34/413 (8%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L++A +CF  +RK       R C  L+ R+ +     ++  F+ ++   G   SV+ +N+
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++  LCKEG ++ A+ +F +  + G     V++N+LI+GH K   LDE   +   M+ + 
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TY+ALIN  CK  R+  A   LHEM   GL PN V ++T ID  CK G      
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGM----- 176

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            ++EA K   +M    L P++ TYT L+D  CK G+L  AL + +E+++ GI+L+ V +T
Sbjct: 177 -LQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYT 235

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL+ G C  G++ EAE + R ML  G+ P+  TYT ++  F K  + +    +LKEM+  
Sbjct: 236 ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK 295

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED- 433
              P +  Y  ++ GLC   +L+ A +L+  + + G+  + + Y  L++ + K G   + 
Sbjct: 296 CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEA 355

Query: 434 --------------------------FDKLQSEKGLVSDYACYTSLVSKSSKY 460
                                     FD++  +KG++ D   YT+L+  + K+
Sbjct: 356 LTLLEEMLDLVDGLCKNNCFEVAKKLFDEML-DKGMMPDKIAYTALIDGNMKH 407



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 188/381 (49%), Gaps = 41/381 (10%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C  +RM +         F  E+   G  P+V  ++  +   CKEG +++A   F +  
Sbjct: 135 CFCKFERMPKA------FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMR 188

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +  L     ++ +LI+ +CKA NL E  +L   +  +G++ +V TY+AL++GLC+E R+ 
Sbjct: 189 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 248

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +AE +   M   G+ PN   +T L+ G  K      A +M+ A+ I+ EM    + PD +
Sbjct: 249 EAEEVFRAMLNAGVAPNQETYTALVHGFIK------AKEMEYAKDILKEMKEKCIKPDLL 302

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  +L G C E  LE A  +  E+ + GI  + V +T L+  + + G+  EA  +L EM
Sbjct: 303 LYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 362

Query: 337 LKV-----------------------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           L +                       G+ PD   YT +ID   K+G+ +    L   M  
Sbjct: 363 LDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIE 422

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G    +  Y AL+ GL   GQ++ A  LLD M+  GV+PD++ Y  L++ +   G  ++
Sbjct: 423 IGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDE 482

Query: 434 FDKLQSE---KGLV---SDYA 448
             +LQ+E   +G++   SD+A
Sbjct: 483 ALELQNEMAKRGMITGLSDHA 503



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 172/335 (51%), Gaps = 25/335 (7%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L +AI+ F  +R+            LID   +       L    EIL  G   +V  +
Sbjct: 175 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 234

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L+  LC+EG++K+A+ VF      G+     ++  L++G  KAK ++    +   M+ 
Sbjct: 235 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 294

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
             ++PD+  Y  ++ GLC E+RL++A+LL+ E+ E G+  N VI+TTL+D + K+G+   
Sbjct: 295 KCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATE 354

Query: 253 AGDMKE-----------------ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           A  + E                 A+K+ DEM   G+ PDKI YT L+DG  K G+L+ AL
Sbjct: 355 ALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEAL 414

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++R  MI+ G+ELD  A+TALI G    G+V +A  +L EM+  G+ PD+  Y  +I  +
Sbjct: 415 NLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKY 474

Query: 356 CKNGDTKTGFRLLKEMR--------SDGHLPAVET 382
              G       L  EM         SD  +P+V+T
Sbjct: 475 YALGKVDEALELQNEMAKRGMITGLSDHAVPSVQT 509


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 207/395 (52%), Gaps = 25/395 (6%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL+   V++G+  D      L+   +    A     L+D+M++                 
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR---------------- 217

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  +  +++ LCK G I  A  +  +  K  + A  V +NT+I+G CK K++D+ 
Sbjct: 218 GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 277

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L + M+  G+RPDV+TYS+LI+ LC   R  DA  LL +M ER + PN V F+ LID 
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 337

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++PD  TY+ L++GFC    L+ A  + + MI 
Sbjct: 338 FVKEGK------LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 391

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    + V ++ LI GFC+  +V E   + REM + GL  +  TYT +I  F +  D   
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 451

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + K+M S G  P + TYN L++GLCK+G+L  A ++ + +    + PD  TYNI++E
Sbjct: 452 AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIE 511

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED  +L    S KG+  +   Y +++S
Sbjct: 512 GMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMIS 546



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 210/432 (48%), Gaps = 23/432 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            ++T++H L  H   S+A  L+  +V +   G    L      T GT + GL        
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQR---GCQPDLV-----TYGTVVNGLC------- 234

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G +D A+   + + K            +ID + +       L  + E+ + G  P 
Sbjct: 235 --KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ ++ L+  LC  G+  DA  +  +  +R ++   V+F+ LI+   K   L E  +L  
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PD++TYS+LING C  +RLD+A+ +   M  +   PN V ++TLI G CK  
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R++      E  ++  EM   GL  + +TYT L+ GF +  D ++A  + K+M+  G+  
Sbjct: 413 RVE------EGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 466

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + + +  L+ G C+ GK+ +A  +   + +  ++PD  TY ++I+  CK G  + G+ L 
Sbjct: 467 NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             +   G  P V  YN +++G C+ G  + A+ LL  M + G +P+  TYN L+    + 
Sbjct: 527 CNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRD 586

Query: 429 GNPEDFDKLQSE 440
           G+ E   +L  E
Sbjct: 587 GDREASAELIKE 598



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 188/347 (54%), Gaps = 11/347 (3%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++LG  ++ L  G S  +Y +++ ++  C+  ++  A  V  +  K G     V+ ++L
Sbjct: 102 VISLGEQMQTL--GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +NG+C +K + +   L   M   G +PD +T++ LI+GL   N+  +A  L+ +M +RG 
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + T+++G CK G ID+      A  ++ +M    +  D + Y  ++DG CK   
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDL------ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 273

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ AL++  EM  +GI  D   +++LIS  C  G+  +A R+L +M++  + P+  T++ 
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +ID F K G      +L  EM      P + TY++L+NG C H +L  A  + + M+   
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             P+ +TY+ L++G CK    E+  +L    S++GLV +   YT+L+
Sbjct: 394 CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 175/359 (48%), Gaps = 29/359 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            I+   R +  ++ L    +++  GY P +   + L++  C   +I DA  + D+  + G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 +F TLI+G        E   L   M   G +PD+ TY  ++NGLCK   +D A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            LL +M +  +  + VI+ T+IDG CK   +D A                          
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G   +A +++ +M    +NP+ +T++ L+D F KEG L  A  +  EMIKR I+ D 
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +++LI+GFC   ++ EA+ M   M+     P+  TY+ +I  FCK    + G  L +E
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           M   G +    TY  L++G  +     NA M+   M+ +GV P+ +TYNILL+G CK+G
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 158/303 (52%), Gaps = 6/303 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++   +P+V  F+ L+    KEGK+ +A+ ++DE  KR +     ++++LING C   
Sbjct: 318 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LDE   +  +M      P+V TYS LI G CK  R+++   L  EM +RGL  N V +T
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYT 437

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G  +      A D   A+ +  +M + G++P+ +TY ILLDG CK G L  A+ + 
Sbjct: 438 TLIHGFFQ------ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + + +  +E D   +  +I G C+ GKV +   +   +   G+ P+   Y  +I  FC+ 
Sbjct: 492 EYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M+ DG LP   TYN L+    + G  + +  L+  M   G   D  T 
Sbjct: 552 GSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 611

Query: 419 NIL 421
            ++
Sbjct: 612 GLV 614



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 166/332 (50%), Gaps = 9/332 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  FN L+  + K  K +    + ++    G+     +++  IN  C+   L     +
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G  PD+ T S+L+NG C   R+ DA  L+ +M E G  P+   FTTLI G   
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHG--- 197

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              + +     EA  +VD+M   G  PD +TY  +++G CK GD++ AL + K+M K  I
Sbjct: 198 ---LFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKI 254

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E D V +  +I G C+   + +A  +  EM   G++PD  TY+ +I C C  G      R
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL +M      P V T++AL++   K G+L  A  L D M+   + PD  TY+ L+ G C
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 374

Query: 427 KHGNPEDFDKLQSEKGLVSDYACYTSLVSKSS 458
            H   +  D+ +    L+    C+ ++V+ S+
Sbjct: 375 MH---DRLDEAKHMFELMISKDCFPNVVTYST 403



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 167/325 (51%), Gaps = 9/325 (2%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L ++L    K+ DA  +F +  K     + V FN L++   K    +    L   M+  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+  D+YTYS  IN  C+ ++L  A  +L +M + G  P+ V  ++L++G+C + RI   
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRI--- 169

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               +A  +VD+M   G  PD  T+T L+ G         A+ +  +M++RG + D V +
Sbjct: 170 ---SDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             +++G C+ G +  A  +L++M K  ++ D   Y  +ID  CK         L  EM +
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P V TY++L++ LC +G+  +A+ LL  M++  + P+ +T++ L++   K G   +
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 346

Query: 434 FDKLQSE---KGLVSDYACYTSLVS 455
            +KL  E   + +  D   Y+SL++
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLIN 371


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 209/392 (53%), Gaps = 43/392 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R+    V + ++  ++  G   +VY +N L++  CK G +  A+ +F E   +G
Sbjct: 406 LIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKG 465

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +  TA +F +LI+G+CK   + + F+L + M  +G+ P+VYT++ALI+GLC  N++ +A 
Sbjct: 466 VEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEAS 525

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  E+ ER + P +V +  LI+G+C++G+ID      +A +++++M   GL PD  TY 
Sbjct: 526 ELFDELVERKIKPTEVTYNVLIEGYCRDGKID------KAFELLEDMHQKGLVPDTYTYR 579

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA--------ER 331
            L+ G C  G +  A D   ++ K+ ++L+ + ++AL+ G+C+ G+++EA        +R
Sbjct: 580 PLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQR 639

Query: 332 ---------------------------MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                                      +L++M   GL+PD+  YT +ID + K G  K  
Sbjct: 640 GINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKA 699

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F     M ++   P V TY ALMNGLCK G++  A +L   M    V P+ ITY   L+ 
Sbjct: 700 FECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDN 759

Query: 425 HCKHGNPEDFDKLQSE--KGLVSDYACYTSLV 454
             K GN ++   L     KGL+++   +  ++
Sbjct: 760 LTKEGNMKEAIGLHHAMLKGLLANTVTHNIII 791



 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 236/487 (48%), Gaps = 48/487 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--RGTHLPGLVLDALM 66
           +Y+ MVH LV  ++   A  LLH ++ ++       +F+  L++  R      L  + L+
Sbjct: 105 SYAIMVHALVHSRLFWPANSLLHTLLLRES--HPKCVFSHFLDSYKRCKFSSTLGFNLLV 162

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             YV    + DA+   +L+  +      R    L++ +++          + E ++ G  
Sbjct: 163 QNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVR 222

Query: 127 P-----------------------------------SVYVFNVLMHKLCKEGKIKDAQMV 151
           P                                   S+  +NVL+H LCK  ++ +A  V
Sbjct: 223 PDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEV 282

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
               G +GL A  V++ TL+ G C+ +  + G +L   M   G  P     S L++GL K
Sbjct: 283 KRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRK 342

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           + ++DDA  L+ ++   G  PN  ++  LI+  CK       GD+ +A  +   M    L
Sbjct: 343 QGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCK------GGDLDKAELLYSNMSLMNL 396

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P+ ITY+IL+D FC+ G L+ A+     MI+ GI     A+ +LI+G C+ G +  AE 
Sbjct: 397 RPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAES 456

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EM   G++P   T+T +I  +CK+   +  F+L  +M  +G  P V T+ AL++GLC
Sbjct: 457 LFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLC 516

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQS--EKGLVSDYA 448
              ++  A+ L D +++  + P ++TYN+L+EG+C+ G  +  F+ L+   +KGLV D  
Sbjct: 517 STNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTY 576

Query: 449 CYTSLVS 455
            Y  L+S
Sbjct: 577 TYRPLIS 583



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 194/415 (46%), Gaps = 77/415 (18%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y +++D G +P+VY F  L+  LC   K+ +A  +FDE  +R +  T V++N LI G+C
Sbjct: 492 LYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYC 551

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   +D+ F L   M   G+ PD YTY  LI+GLC   R+  A+  + ++ ++ +  N++
Sbjct: 552 RDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEM 611

Query: 236 IFTTLIDGHCKNGRIDMA------------------------GDMKEARK-----IVDEM 266
            ++ L+ G+C+ GR+  A                        G +K+  +     ++ +M
Sbjct: 612 CYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDM 671

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL PD + YT ++D + KEG  + A +    M+      + V +TAL++G C+ G++
Sbjct: 672 HDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEM 731

Query: 327 VEAERMLREMLKVGLKPDDATY----------------------------------TMVI 352
             A  + + M    + P+  TY                                   ++I
Sbjct: 732 DRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIII 791

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             FCK G      ++L EM  +G  P   TY+ L+   C+ G +  +  L DTML+ G+ 
Sbjct: 792 RGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLE 851

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           PD + YN+L+ G C +G  +   +L+ +   +G++ D           +KY QK+
Sbjct: 852 PDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD-----------NKYLQKK 895



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 173/361 (47%), Gaps = 12/361 (3%)

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC-KEGKIKDAQMVFDEFGKRGLHAT 163
           +  N+   T  + + +    +S   +  N L+H L  +E   K     F +  KR   ++
Sbjct: 95  LHKNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLLLRESHPKCVFSHFLDSYKRCKFSS 154

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            + FN L+  +  +  + +   +  +M  + + P+V T SAL+NGL K  +      L  
Sbjct: 155 TLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFD 214

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           E    G+ P+    + ++   C+        D   A++ +  M  NG +   +TY +L+ 
Sbjct: 215 ESVNAGVRPDPYTCSAVVRSMCE------LKDFLRAKEKIRWMEANGFDLSIVTYNVLIH 268

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G CK   +  A+++++ +  +G+  D V +  L+ GFCR  +     +++ EM+++G  P
Sbjct: 269 GLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSP 328

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
            +A  + ++D   K G     + L+ ++   G +P +  YNAL+N LCK G L  A +L 
Sbjct: 329 TEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLY 388

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
             M  + + P+ ITY+IL++  C+ G  +     FD++  + G+      Y SL++   K
Sbjct: 389 SNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRM-IQDGIGETVYAYNSLINGQCK 447

Query: 460 Y 460
           +
Sbjct: 448 F 448


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 155/501 (30%), Positives = 235/501 (46%), Gaps = 96/501 (19%)

Query: 38  GMGSSASLFASILE-------TRGTHLPGL--VLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           G G    L AS+++         G H   L  V D L+ +  D G LDDA++    +R+ 
Sbjct: 103 GAGHRPHLAASLVDILHRAALALGPHRSALPSVFDTLLSLLADHGLLDDAVRALARVRQ- 161

Query: 89  YFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
             R+P   R C  ++ R+ R        G    + ++  +P+V+ FN+++  LCK+G++ 
Sbjct: 162 -LRVPPNTRTCNHILLRLARNRQG----GLVRRLFEHLPAPNVFTFNIVIDFLCKQGELV 216

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A+ +F      G     V++N+LI+G+ K   L+E   L S M  SG   DV TY+ALI
Sbjct: 217 EARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALI 276

Query: 207 N-----------------------------------GLCKENRLDDAELLLHEMCERGLT 231
           N                                     CKE  + +A  L  +M  RG+ 
Sbjct: 277 NCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMM 336

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN+  +T+L+DG CK GR+D      +A  ++DEM   GL P+ +TYT+++DG CKEG +
Sbjct: 337 PNEFTYTSLVDGTCKAGRLD------DAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 390

Query: 292 -----------------------------------ESALDIRKEMIKRGIELDNVAFTAL 316
                                              E ALD+  EM  +G+ELD   +  L
Sbjct: 391 AVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTL 450

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I G C+  K+ EA+ +L +M   GL+P+   YT ++D F K G       LL ++   G 
Sbjct: 451 IWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGL 510

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P V TY AL++GLCK G +  A    D M +LG+ P+   Y  L++G CK G+      
Sbjct: 511 QPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVH 570

Query: 437 LQSE---KGLVSDYACYTSLV 454
           L +E   KG+  D   YTSL+
Sbjct: 571 LMNEMVDKGMSLDKVVYTSLI 591



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 173/322 (53%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V  + V++  LCKEGK+  A  V     + G+ A  + + TLI+GH   K
Sbjct: 364 EMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNK 423

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N +    L + M+  GM  DV  Y  LI GLCK  +LD+A+ LLH+M + GL PN VI+T
Sbjct: 424 NSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYT 483

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T++D   K      AG   EA  ++ ++  +GL P+ +TY  L+DG CK G +  A+   
Sbjct: 484 TIMDAFFK------AGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHF 537

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M + G++ +   +T LI GFC+ G + +A  ++ EM+  G+  D   YT +ID   K 
Sbjct: 538 DKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQ 597

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD +  F L  +M   G    +  Y   ++G C    ++ A  +L  M+  G+ PD   Y
Sbjct: 598 GDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAY 657

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
           N L+  + K GN E+   LQ+E
Sbjct: 658 NCLIRKYQKLGNMEEASSLQNE 679



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P+  ++  +M    K GK  +A  +  +    GL    V++  LI+G CKA ++ 
Sbjct: 472 DCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIY 531

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E       M   G+ P+V  Y+ LI+G CK   L  A  L++EM ++G++ + V++T+LI
Sbjct: 532 EAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLI 591

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           DGH K G      D++ A  +  +M   GL  D   YT  + GFC    ++ A  +  EM
Sbjct: 592 DGHMKQG------DLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEM 645

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           I  GI  D  A+  LI  + + G + EA  +  EM  V
Sbjct: 646 IGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESV 683



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 127/285 (44%), Gaps = 34/285 (11%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL----------ETR------ 53
           Y+T++H    +K   +A DLL+ +   KGM    SL+ +++          E +      
Sbjct: 412 YTTLIHGHFMNKNSERALDLLNEM-KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKM 470

Query: 54  ---GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDR 103
              G     ++   +M  +   G   +A+           +IP  G +        LID 
Sbjct: 471 DDCGLRPNTVIYTTIMDAFFKAGKESEAVALLH-------KIPDSGLQPNVVTYCALIDG 523

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           + +       +  + ++ + G  P+V V+  L+   CK G +  A  + +E   +G+   
Sbjct: 524 LCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLD 583

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V + +LI+GH K  +L   F LK+ M  +G++ D+Y Y+  I+G C  N + +A  +L 
Sbjct: 584 KVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLS 643

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           EM   G+TP+   +  LI  + K G ++ A  ++   + V   CT
Sbjct: 644 EMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESVLSSCT 688


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 133/408 (32%), Positives = 203/408 (49%), Gaps = 69/408 (16%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+   G +P++  +N +++ LCK  ++     +F+E  KRG H   V++NTLI+  C
Sbjct: 68  FRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLC 127

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM---------- 225
           KA +L+E  RL   M   G  P+V TYS LINGLCK  R+D+A  L+ EM          
Sbjct: 128 KAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPN 187

Query: 226 -----------CERGLT------------------PNDVIFTTLIDGHCKNGRIDMAGD- 255
                      C++ +T                  P+ V F+TLIDG CK G+ D A + 
Sbjct: 188 IITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACND 247

Query: 256 --------------------------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
                                     M+ A  +++ M   G+ PD ITY++L+D FCK  
Sbjct: 248 DMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS 307

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ AL++   M  RG   + V F ++I G C+  +  EA ++  ++    L PD  T+ 
Sbjct: 308 RVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFN 367

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I   CK G+ +    L +EM +    P V T+ AL++GLCK GQ++ A  +LD M +L
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427

Query: 410 GVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           GV P+ +TYN+L+ G CK G    P +F +     G V +   Y SLV
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLV 475



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 169/307 (55%), Gaps = 8/307 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP    F+ L+  LCK G+  +A    D+    G     V++N L+NG CKA  ++    
Sbjct: 222 SPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHA 279

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ PDV TYS L++  CK +R+D+A  LLH M  RG TPN V F ++IDG C
Sbjct: 280 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC 339

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+ R        EA +I  ++    L PDK+T+ IL+ G CK G+ E A  + +EM+ + 
Sbjct: 340 KSDR------SGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 393

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           ++ D + F ALI G C+ G+V  A  +L  M  +G+ P+  TY +++   CK+G  +   
Sbjct: 394 MQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPC 453

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
             L+EM S G +P   TY +L+  LC+  +  +A  L+  +   G  PD +TYNIL++G 
Sbjct: 454 EFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGL 513

Query: 426 CKHGNPE 432
            K G  E
Sbjct: 514 WKSGKTE 520



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 186/380 (48%), Gaps = 51/380 (13%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVF-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           S SV  +N+++  LC+ G+   A  +F  E  + G+  T V++NT+ING CK+  L  G 
Sbjct: 42  SRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGM 101

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   +   G  PDV TY+ LI+ LCK   L++A  L   M  RG  PN V ++ LI+G 
Sbjct: 102 ELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGL 161

Query: 245 CKNGRIDMAGDMKEARKIVDEM---------------------CTNGL------------ 271
           CK GRID      EAR+++ EM                     C   +            
Sbjct: 162 CKVGRID------EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 215

Query: 272 ------NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
                 +PD +T++ L+DG CK G  + A +   +MI  G   + V + AL++G C+  K
Sbjct: 216 DGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADK 273

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           +  A  M+  M+  G+ PD  TY++++D FCK         LL  M S G  P V T+N+
Sbjct: 274 MERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNS 333

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KG 442
           +++GLCK  +   A  +   + +  +VPD +T+NIL+ G CK GN E    L  E   K 
Sbjct: 334 IIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 393

Query: 443 LVSDYACYTSLVSKSSKYRQ 462
           +  D   + +L+    K  Q
Sbjct: 394 MQPDVMTFGALIDGLCKAGQ 413



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P+V  +N L++ LCK  K++ A  + +    +G+    ++++ L++  CKA  +DE 
Sbjct: 253 GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G  P+V T++++I+GLCK +R  +A  +  ++  R L P+ V F  LI G
Sbjct: 313 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAG 372

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      AG+ ++A  + +EM    + PD +T+  L+DG CK G +E+A DI   M  
Sbjct: 373 ACK------AGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGN 426

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V +  L+ G C+ G++ E    L EM+  G  P+  TY  ++   C+   T  
Sbjct: 427 LGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDD 486

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L+ +++S G  P   TYN L++GL K G+ + A  +L+ M+  G  PD  T+     
Sbjct: 487 ALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFG 546

Query: 424 GHCKHGN 430
           G  + GN
Sbjct: 547 GLHRSGN 553



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 175/344 (50%), Gaps = 16/344 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEF--GKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           P++  +N  +  LCK+    +A  +      G   +    V+F+TLI+G CK    DE  
Sbjct: 186 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA- 244

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
                M   G  P+V TY+AL+NGLCK ++++ A  ++  M ++G+TP+ + ++ L+D  
Sbjct: 245 -CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 303

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK  R+D      EA +++  M + G  P+ +T+  ++DG CK      A  I  ++  R
Sbjct: 304 CKASRVD------EALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR 357

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  D V F  LI+G C+ G   +A  +  EM+   ++PD  T+  +ID  CK G  +  
Sbjct: 358 MLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAA 417

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +L  M + G  P V TYN L++GLCK G+++     L+ M+  G VP+ +TY  L+  
Sbjct: 418 RDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYA 477

Query: 425 HCKHGNPEDFDKLQSEK---GLVSDYACYTSLVS---KSSKYRQ 462
            C+    +D  +L S+    G   D   Y  LV    KS K  Q
Sbjct: 478 LCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQ 521



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 165/325 (50%), Gaps = 12/325 (3%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C  D+M R +           ++D G +P V  ++VL+   CK  ++ +A  +      R
Sbjct: 269 CKADKMERAH------AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 322

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G     V+FN++I+G CK+    E F++   +    + PD  T++ LI G CK    + A
Sbjct: 323 GCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQA 382

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  EM  + + P+ + F  LIDG CK      AG ++ AR I+D M   G+ P+ +TY
Sbjct: 383 SALFEEMVAKNMQPDVMTFGALIDGLCK------AGQVEAARDILDLMGNLGVPPNVVTY 436

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            +L+ G CK G +E   +  +EM+  G   +++ + +L+   CR  +  +A +++ ++  
Sbjct: 437 NVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKS 496

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G  PD  TY +++D   K+G T+    +L+EM   GH P   T+ A   GL + G L  
Sbjct: 497 FGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAG 556

Query: 399 ANMLLDTMLDLGVVPDDITYNILLE 423
              LL  +L  G++PD  T + +L+
Sbjct: 557 TMELLRVVLAKGMLPDATTCSSILD 581


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 227/456 (49%), Gaps = 11/456 (2%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P+++ +L +  TM++ L  HK    A   L  I  K  + + + L + +       +   
Sbjct: 78  PNYKHSLQSSWTMLYILTKHKHFKTAHAFLENIAFKDFLSTQSVLSSLVKIHDDPDVNSH 137

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           VL  L+IVY +     +AIQ F  +R + FR     C  L++ + +  L       Y ++
Sbjct: 138 VLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKM 197

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +  G   +++V+NVL+H  CK G ++ A+ V  E   + +     ++NTLI+ +CK    
Sbjct: 198 VKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMH 257

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   ++  ME +G+ PD++TY++LI G C+E R+ +A  L  ++  + +TPN V +T+L
Sbjct: 258 YEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDI--KDVTPNHVTYTSL 315

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           IDG+C+        D+ EA ++ + M   GL P  ITY  +L   C+ G L  A  +  E
Sbjct: 316 IDGYCR------VNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNE 369

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M +R IE DNV    LI+ +C+ G +  A ++  +M+  GLK D  TY  +I  FCK  +
Sbjct: 370 MSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKE 429

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 LL  M   G  P+  TY+ L++  CK    +    L D ++  G+  D   Y  
Sbjct: 430 IDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRA 489

Query: 421 LLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSL 453
           L+   CK    +   +   L  +KG+  D   YTSL
Sbjct: 490 LIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSL 525



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 160/298 (53%), Gaps = 13/298 (4%)

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +++  +S+  ++ G+ K  +  E  ++   M  +G RP ++  + L+N L K+   D   
Sbjct: 134 VNSHVLSWLVIVYGNSKMTH--EAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVW 191

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  +M + G+  N  ++  L+   CK      +GD+++A K++ EM    + PD  TY 
Sbjct: 192 KIYKKMVKLGVVANIHVYNVLLHACCK------SGDVEKAEKVLSEMELKCVFPDLFTYN 245

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+  +CK+G    AL ++  M   GI  D   + +LI GFCR G++ EA ++ R++  V
Sbjct: 246 TLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIKDV 305

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              P+  TYT +ID +C+  D     RL + M   G  P V TYN+++  LC+ G+L++A
Sbjct: 306 T--PNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDA 363

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           N+LL+ M +  + PD++T N L+  +CK G+     K++ +    GL  D   Y +L+
Sbjct: 364 NILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALI 421



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKGM   A      +E  G        ++L+  +   G + +A+Q FR ++      P  
Sbjct: 253 KKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIKD---VTPNH 309

Query: 96  GC-RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                LID   R N     L     + + G  P+V  +N ++ KLC+ G+++DA ++ +E
Sbjct: 310 VTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNE 369

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             +R +    V+ NTLIN +CK  ++    ++K  M G+G++ D +TY ALI+G CK   
Sbjct: 370 MSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKE 429

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +D A+ LL  M + G +P+   ++ L+D +CK        + +   K+ DE+   GL  D
Sbjct: 430 IDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQ------NEEAVIKLPDELVRRGLCVD 483

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
              Y  L+  FCK   ++ A  +   M  +GI  D+V +T+L  G+ + GKV     +L 
Sbjct: 484 VSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILD 543

Query: 335 EMLK 338
           EM K
Sbjct: 544 EMYK 547



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++D G+SPS   ++ L+   CK+   +    + DE  +RGL      +  LI   CK + 
Sbjct: 440 MMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEK 499

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +D   R+  +M+  G+  D   Y++L  G  K  +++    +L EM ++ L     I+ +
Sbjct: 500 IDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIYRS 559

Query: 240 LIDGHCKNGRI 250
               +  +  I
Sbjct: 560 FNASYASDNSI 570


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/431 (31%), Positives = 223/431 (51%), Gaps = 21/431 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G  + A  +  +L   G  +     +AL++ Y   G L  A  C+ L+      +P  
Sbjct: 195 KEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKA--CWLLMM-----MPLM 247

Query: 96  GCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
           GCR        LI  +  T      L   L +L  G SP+++ + +L+  LCKEG+I DA
Sbjct: 248 GCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDA 307

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           +++ DE  +RG+  +  ++N +I+G+CK+  L +   +K++MEG+G  PD +TY++LI+G
Sbjct: 308 RVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHG 367

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   + D+AE LL+    RG +P  + FT +I+G+CK  +ID      +A ++   M +
Sbjct: 368 LCG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKID------DALRVKSIMIS 420

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +    D   Y +L+    K+  L+ A D   E+   G+  + V +T++I  +C+ GKV  
Sbjct: 421 SKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGA 480

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  + +     G +P+  TY+ +I    ++        L+ +M+ DG  P V TY  L+ 
Sbjct: 481 ALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQ 540

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA 448
           G CK  +  NA  L + M   G+ PD+  YN+L +  CK G  E+      +KG+V    
Sbjct: 541 GQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKV 600

Query: 449 CYTSLVSKSSK 459
            YTSLV   SK
Sbjct: 601 TYTSLVDGFSK 611



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 61/420 (14%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           +L L AY  ++  L+      +A+D L+ I +  G+  +  ++ SI++            
Sbjct: 424 KLDLQAYGVLISVLIKKHRLKEAKDTLNEIFAN-GLSPNVVIYTSIID------------ 470

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
                Y  +G +  A++ F+L           GCR                         
Sbjct: 471 ----AYCKVGKVGAALEVFKLTEH-------EGCR------------------------- 494

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
              P+ + ++ L++ L ++ K+  A  +  +  + G+    +++ TLI G CK    D  
Sbjct: 495 ---PNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNA 551

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +ME +G+ PD   Y+ L + LCK  R ++A   L    ++G+    V +T+L+DG
Sbjct: 552 FRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VKKGVVLTKVTYTSLVDG 608

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K      AG+ + A  ++++M   G   D  TY++LL   CK+  L  AL I  +M  
Sbjct: 609 FSK------AGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTL 662

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG++ + VA+T +IS   + GK   A+ M  EM+  G KP   TYT+ I  +CK G  + 
Sbjct: 663 RGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEE 722

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM  +G  P V TYN  +NG    G +  A   L  M+D    P+  TY +LL+
Sbjct: 723 AGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLK 782



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 162/328 (49%), Gaps = 12/328 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + VL+  L K+ ++K+A+   +E    GL    V + ++I+ +CK   +     +  + 
Sbjct: 429 AYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLT 488

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G RP+ +TYS+LI GL ++ +L  A  L+ +M E G+TP  + +TTLI G CK    
Sbjct: 489 EHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 548

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D       A ++ + M  NGL PD+  Y +L D  CK G  E A      ++K+G+ L  
Sbjct: 549 D------NAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSF---LVKKGVVLTK 599

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +T+L+ GF + G    A  ++ +M+  G K D  TY++++   CK         +L +
Sbjct: 600 VTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQ 659

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    +  Y  +++ + K G+  +A  + + M+  G  P  ITY + +  +CK G 
Sbjct: 660 MTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGR 719

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLVS 455
            E+   L  E    G+  D   Y   ++
Sbjct: 720 IEEAGHLIGEMERNGVAPDVVTYNVFIN 747



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 211/507 (41%), Gaps = 79/507 (15%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYV-------DLGFLD 76
           + A      +  + G   +A+  A++L+           D L++  +       D+    
Sbjct: 71  ATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMISCSGTAEDMREAV 130

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           DAIQ  R        +  +     +  ++R ++       Y +++  G  P    +N ++
Sbjct: 131 DAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNTMI 190

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
              CKEG +  A   F    + G+     + N L+ G+C+  +L +   L  +M   G R
Sbjct: 191 MAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCR 250

Query: 197 PDVYTYSALIN-----------------------------------GLCKENRLDDAELL 221
            + Y+Y+ LI                                    GLCKE R+ DA +L
Sbjct: 251 RNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVL 310

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------------------- 253
           L EM  RG+ P+   +  +IDG+CK+GR+  A                            
Sbjct: 311 LDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCG 370

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G   EA ++++     G +P  IT+T +++G+CK   ++ AL ++  MI    +LD  A+
Sbjct: 371 GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAY 430

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LIS   +  ++ EA+  L E+   GL P+   YT +ID +CK G       + K    
Sbjct: 431 GVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEH 490

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +G  P   TY++L+ GL +  +L  A  L+  M + G+ P  ITY  L++G CK     +
Sbjct: 491 EGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK---HE 547

Query: 434 FD------KLQSEKGLVSDYACYTSLV 454
           FD      ++  + GL  D   Y  L 
Sbjct: 548 FDNAFRLFEMMEQNGLTPDEQAYNVLT 574



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 22/337 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G     + ++VL+  LCK+ K+ +A  + D+   RG+    V++  +I+   K  
Sbjct: 624 KMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEG 683

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D    + + M  SG +P   TY+  I+  CK  R+++A  L+ EM   G+ P+ V + 
Sbjct: 684 KHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYN 743

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG--------- 289
             I+G    G +D A      ++++D  C     P+  TY +LL  F K           
Sbjct: 744 VFINGCGHMGYMDCA--FSTLKRMIDASC----EPNYWTYWLLLKHFLKMSLANAHYVDT 797

Query: 290 -------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
                   L++   + + M+K G+    V ++++I+GFC+  ++ EA  +L  ML   + 
Sbjct: 798 SGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDIS 857

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P++  YTM+I C C     +     +  M   G  P +E+Y+ L+ GLC  G    A  L
Sbjct: 858 PNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKAL 917

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
              +L++    +++ + IL +G  K G+ +   +L S
Sbjct: 918 FCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLS 954



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 80/291 (27%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN--GH-- 174
           E++  G+ PS   + V +   CK G+I++A  +  E  + G+    V++N  IN  GH  
Sbjct: 694 EMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMG 753

Query: 175 ----------------CKAK-------------------------------NLDEGFRLK 187
                           C+                                  LD  ++L 
Sbjct: 754 YMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLL 813

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+ P   TYS++I G CK  RL++A +LL  M  + ++PN+ I+T LI   C  
Sbjct: 814 ERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDI 873

Query: 248 GRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
              + A                             GD  +A+ +  ++     N +++ +
Sbjct: 874 KLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAW 933

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            IL DG  K G ++    +   M  R   +D+  ++ + +       + E+
Sbjct: 934 KILNDGLLKAGHVDICSQLLSAMENRHCRIDSETYSMVTNNIHEASGMYES 984



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 1/179 (0%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE-ILDYGYSPSVYVFNVLMHKLC 140
           + LL KH+ ++       +    M   +   T+   LE ++ +G +P+   ++ ++   C
Sbjct: 777 YWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFC 836

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           K  ++++A ++ D    + +      +  LI   C  K  ++     + M   G +P + 
Sbjct: 837 KATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLE 896

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
           +Y  LI GLC E   D A+ L  ++ E     N+V +  L DG  K G +D+   +  A
Sbjct: 897 SYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSA 955


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/553 (25%), Positives = 250/553 (45%), Gaps = 102/553 (18%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H +   +  L+       AR L+  ++  K   SS S   ++     T +  L  D L+ 
Sbjct: 61  HEHVQKLQTLLQQGRTETARRLIRSMLLPKSPFSSPSHLYTLFSLSSTPMKPLFSDMLLS 120

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG--- 124
           +  +   + ++ + + L++K             ++ ++ T     TL  + EI++ G   
Sbjct: 121 ICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRP 180

Query: 125 --------------------------------YSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
                                            SP V+V+NV++  LCKE ++KDA+ +F
Sbjct: 181 DQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLF 240

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           DE   R +    +++NTLI+G+CK   L+E F ++  M+   + P + T+++L+NGLC+ 
Sbjct: 241 DEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRA 300

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------- 253
             +++A+ +L EM   G  P+   +TTL DGH K G +D +                   
Sbjct: 301 QMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTC 360

Query: 254 ----------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                     G+M++A +++ +   NGL P  + +  +++G+C+ GD+  A    ++M  
Sbjct: 361 SILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEA 420

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAER-------------------------------- 331
            G+  ++V + +L+  FC    + EAE+                                
Sbjct: 421 VGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDR 480

Query: 332 ---MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
              +L EM K GLKP+  +Y  +I+C CK+ +      +L +M   G +P  + YN L++
Sbjct: 481 CFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLID 540

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           G C  G+LK+A    D M+   +VP  +TYNIL+ G CK G   + + L SE   KGL  
Sbjct: 541 GSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSF 600

Query: 446 DYACYTSLVSKSS 458
           D   Y SL+S  S
Sbjct: 601 DVITYNSLISGYS 613



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 178/339 (52%), Gaps = 15/339 (4%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           ++ILDY  S       +L++ LCKEG ++ A+ V  +F + GL    V FNT++NG+C+ 
Sbjct: 353 VQILDYTCS-------ILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQV 405

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            ++++ +     ME  G+RP+  TY++L+   C+   +++AE  + +M E+G+ PN   +
Sbjct: 406 GDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETY 465

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            TLIDG+ ++   D         +I++EM   GL P+ I+Y  L++  CK+ ++  A  I
Sbjct: 466 NTLIDGYGRSCLFD------RCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVI 519

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +M+ RG+  +   +  LI G C  GK+ +A R   EM+   + P   TY ++I+  CK
Sbjct: 520 LGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCK 579

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G       L  E+   G    V TYN+L++G    G ++ A  L +TM   G+ P   T
Sbjct: 580 KGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNT 639

Query: 418 YNILLEGHCKHG--NPEDFDKLQSEKGLVSDYACYTSLV 454
           Y+ L+ G  K G    E   +   +  LV D   Y +L+
Sbjct: 640 YHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALI 678



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 187/391 (47%), Gaps = 7/391 (1%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +E  G     +  ++L+  + ++  +++A +C + + +            LID   R+ L
Sbjct: 418 MEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCL 477

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                    E+   G  P+V  +  L++ LCK+  I +A+++  +   RG+   A  +N 
Sbjct: 478 FDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNM 537

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI+G C A  L + FR    M    + P + TY+ LINGLCK+ ++ +AE L  E+  +G
Sbjct: 538 LIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKG 597

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L+ + + + +LI G+        AG++++A ++ + M  +G+ P   TY  L+ G  KEG
Sbjct: 598 LSFDVITYNSLISGYSS------AGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG 651

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            L     I +EM++  +  D V + ALI  +   G V +A  +   M   G++PD  TY 
Sbjct: 652 -LVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYN 710

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I    K G       L+ +M+  G +P  ETY+ L+ G CK      A +    M + 
Sbjct: 711 CLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFEN 770

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           G  P     + L+ G  + G   D D + SE
Sbjct: 771 GFTPSVSICDNLITGLREEGRSHDADVICSE 801


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 190/344 (55%), Gaps = 12/344 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E++  G  PS+Y +N L++  CKE K+K+A  +F    ++G     V+++T+I+G C
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 176 KAKNLDEGFR-LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           K   + E    L   M   G   +   Y+ALINGLCK+  ++ A  LL EM  +G  P++
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           + + T++ G C+ G++       EA++  D M + G +PD + Y  LLD   KEG  + A
Sbjct: 185 ITYNTILSGLCRMGKVS------EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEA 238

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           + + K++I +G   D V + +++ G  R   + EAE M ++M+  G  P+ ATY++V+  
Sbjct: 239 MKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSG 298

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+        ++L+EM   G +P V TYN L++GLCK   +  A+ L  TM+D G  PD
Sbjct: 299 HCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358

Query: 415 DITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            ++Y+++L G CK     D    FD++  E+ LV D   +  L+
Sbjct: 359 IVSYSVVLNGLCKTNKVHDARVLFDRM-IERKLVPDVVTFNILM 401



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 180/332 (54%), Gaps = 8/332 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ Y F V++   CK+GK++D   +F++    G+    + +N LI+G+ K   +DE  R
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   G+ P +YTY++L+N  CKE ++ +A  L   M E+G  P+ V ++T+I G C
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G++  A +M     +  +M   G + + + Y  L++G CK+ ++E A  + +EM  +G
Sbjct: 125 KTGKVTEALEM-----LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKG 179

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              DN+ +  ++SG CR GKV EA++    M   G  PD   Y  ++D   K G T    
Sbjct: 180 YVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAM 239

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +L K++ + G++P   TYN+++ GL +   +  A  +   M+  G  P+  TY+I+L GH
Sbjct: 240 KLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGH 299

Query: 426 CKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           C+    +D  K+    S+ G V D   Y  L+
Sbjct: 300 CRAKKVDDAHKVLEEMSKIGAVPDVVTYNILL 331



 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 217/415 (52%), Gaps = 11/415 (2%)

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
           LF  +L+  G    G+  + L+  Y   G +D+A + +  +              L++  
Sbjct: 30  LFEQMLDN-GISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAF 88

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHAT 163
            +       +  +  + + G+ P V  ++ ++  LCK GK+ +A +M+F +  +RG  A 
Sbjct: 89  CKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSAN 148

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V++N LING CK +N++  ++L   M   G  PD  TY+ +++GLC+  ++ +A+    
Sbjct: 149 TVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFD 208

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
            M  RG +P+ V +  L+D   K G+ D      EA K+  ++   G  PD +TY  +L 
Sbjct: 209 SMPSRGYSPDVVAYNGLLDALYKEGKTD------EAMKLFKDVIAKGYMPDTVTYNSILL 262

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G  ++ +++ A ++ K+M+  G   +   ++ ++SG CR  KV +A ++L EM K+G  P
Sbjct: 263 GLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVP 322

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  TY +++D  CK         L   M  +G  P + +Y+ ++NGLCK  ++ +A +L 
Sbjct: 323 DVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLF 382

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           D M++  +VPD +T+NIL++G CK G  ++   L  +    G   DY  Y +L++
Sbjct: 383 DRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMN 437



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           R  +PN   F  ++   CK G+      +++  K+ ++M  NG++PD I Y IL+DG+ K
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGK------LRDGYKLFEQMLDNGISPDGIEYNILIDGYAK 55

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           +G ++ A  + +EM+  G+E     + +L++ FC+  K+ EA  + + M + G +PD  T
Sbjct: 56  KGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVT 115

Query: 348 YTMVIDCFCKNGDTKTGFRLL-KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           Y+ +I   CK G       +L  +M   G       YNAL+NGLCK   ++ A  LL+ M
Sbjct: 116 YSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEM 175

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
              G VPD+ITYN +L G C+ G   +    FD + S +G   D   Y  L+
Sbjct: 176 ASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPS-RGYSPDVVAYNGLL 226



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 16/103 (15%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           R L DRM+   L                 P V  FN+LM  LCK GK+ +A+ + D+   
Sbjct: 379 RVLFDRMIERKL----------------VPDVVTFNILMDGLCKAGKLDEAKDLLDQMTC 422

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
            G     V++NTL+NG  K     +  RL   M+  G   D +
Sbjct: 423 SGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 465


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 241/462 (52%), Gaps = 14/462 (3%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           ++L     ++H L   K +S+ R  L   V         S+F +I       +  ++ D 
Sbjct: 99  VSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADM 158

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L++ Y +    +   + F+    + +++ A  C+ L+  +++ N        Y E++   
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRK 218

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+V+ FNV+++ LCK GK+  A+ V ++    G     VS+NTLI+G+CK     + +
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMY 278

Query: 185 RLKSV---MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  +V   M  + + P++ T++ LI+G  K++ L  +  +  EM ++ + PN + + +LI
Sbjct: 279 KADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLI 338

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G C  G+I+ A  M+      D+M + G+ P+ ITY  L++GFCK G ++ ALD+   +
Sbjct: 339 NGLCNGGKINEAIGMR------DKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSV 392

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             +G       +  LI  +C+ GK+ +   +  EM + G+ PD  TY  +I   C+NG+ 
Sbjct: 393 KGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   +L  ++ + G LP + T++ LM G C  G+ + A MLL  M  +G+ P  +TYNI+
Sbjct: 453 EAAKKLFDQLTNKG-LPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIM 511

Query: 422 LEGHCKHGNPEDF----DKLQSEKGLVSDYACYTSLVSKSSK 459
           ++G+CK GN +       +++ E+ L  + A Y  L+   S+
Sbjct: 512 MKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQ 553



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 177/318 (55%), Gaps = 8/318 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++   SP++  FN+L+    K+  +  +  VF E   + +    +++N+LING C   
Sbjct: 286 EMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGG 345

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++E   ++  M  +G++P++ TY +LING CK   + +A  +   +  +G  P   ++ 
Sbjct: 346 KINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYN 405

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID +CK G+ID    +KE      EM   G+ PD  TY  L+ G C+ G++E+A  + 
Sbjct: 406 MLIDAYCKLGKIDDGFALKE------EMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++  +G+  D V F  L+ G+C  G+  +A  +L+EM K+GLKP   TY +++  +CK 
Sbjct: 460 DQLTNKGLP-DLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKE 518

Query: 359 GDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           G+ K    +  +M  +  L   V +YN L+ G  + G+L++ANMLL+ ML+ G+VP+ IT
Sbjct: 519 GNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRIT 578

Query: 418 YNILLEGHCKHGNPEDFD 435
           Y I+ E     G   D +
Sbjct: 579 YEIVKEEMVDKGFVPDIE 596



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 166/328 (50%), Gaps = 33/328 (10%)

Query: 100 LIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID   +  NLP  +L  + E+LD    P+V  +N L++ LC  GKI +A  + D+    
Sbjct: 302 LIDGFWKDDNLPG-SLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSA 360

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    +++++LING CK   + E   +   ++G G RP    Y+ LI+  CK  ++DD 
Sbjct: 361 GVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDG 420

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  EM   G+ P+   +  LI G C+NG I+       A+K+ D++   GL PD +T+
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE------AAKKLFDQLTNKGL-PDLVTF 473

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            IL++G+C  G+   A  + KEM K G++  ++ +  ++ G+C+ G +  A  M  +M K
Sbjct: 474 HILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEK 533

Query: 339 V-GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
              L+ + A+Y +++  + + G  +    LL EM   G +P   TY              
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY-------------- 579

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGH 425
              ++ + M+D G VPD       +EGH
Sbjct: 580 --EIVKEEMVDKGFVPD-------IEGH 598



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 170/370 (45%), Gaps = 30/370 (8%)

Query: 110 PTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--------L 160
           P + L +Y  ++ +   S S+ +   L+H L    +    +   D F + G         
Sbjct: 81  PDLCLRYYTWLVKNRDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIF 140

Query: 161 HATAVSFNTLIN---------GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           HA ++  N  +N          +      + GF         G +    +   L+  L K
Sbjct: 141 HAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLK 200

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           +NR  D E L  EM  R + PN   F  +I+  CK G+      M +AR ++++M   G 
Sbjct: 201 QNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGK------MNKARDVMEDMKVYGY 254

Query: 272 NPDKITYTILLDGFCK---EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +P+ ++Y  L+DG+CK    G +  A  + KEM++  +  +   F  LI GF +   +  
Sbjct: 255 SPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPG 314

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           + ++ +EML   + P+  TY  +I+  C  G       +  +M S G  P + TY++L+N
Sbjct: 315 SLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLIN 374

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           G CK+G +K A  + D++   G  P    YN+L++ +CK G  +D   L+ E   +G+V 
Sbjct: 375 GFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVP 434

Query: 446 DYACYTSLVS 455
           D   Y  L++
Sbjct: 435 DVGTYNCLIA 444


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 245/497 (49%), Gaps = 37/497 (7%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPG 59
           +FR  + +Y  +VH L   +M+ + R  L+ +V         ++    L    R      
Sbjct: 97  NFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSP 156

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYL 118
            V D ++ VYV+ G   +A+  F  + K   RIP+ R C  L++ +++          Y 
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGKCG-RIPSLRSCNSLLNNLVKNGETHTAHYVYQ 215

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G  P V++ +++++  CK+GK+ +A     +    G+    V++++LING+    
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIF 237
           +++    +   M   G+  +V TY+ LI G CK+ ++D+AE +L  M E   L P++  +
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAY 335

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
             LIDG+C+ G+ID A                             G++ EA  ++  M  
Sbjct: 336 GVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 395

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             L PD  +Y  LLDG+C+EG    A ++  +M++ GIE   + +  L+ G CR G   +
Sbjct: 396 WNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDD 455

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A ++   M+K G+ PD+  Y+ ++D   K  + +    L K++ + G   +  T+N +++
Sbjct: 456 ALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMIS 515

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS--EKGLVS- 445
           GLCK G++  A  + D M DLG  PD ITY  L++G+CK  N     K++   E+  +S 
Sbjct: 516 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISP 575

Query: 446 DYACYTSLVSKSSKYRQ 462
               Y SL+S   K R+
Sbjct: 576 SIEMYNSLISGLFKSRR 592



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 226/494 (45%), Gaps = 67/494 (13%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           ++G  S A      +   G     L  + L+     +G  DDA+Q + L+ K        
Sbjct: 414 REGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEV 473

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           G   L+D + +          + +IL  G++ S   FN ++  LCK GK+ +A+ +FD+ 
Sbjct: 474 GYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 533

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G     +++ TLI+G+CKA N+ + F++K  ME   + P +  Y++LI+GL K  RL
Sbjct: 534 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRL 593

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------------- 253
            +   LL EM  RGLTPN V +  LIDG CK G +D A                      
Sbjct: 594 VEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM 653

Query: 254 -------GDMKEA----RKIVD----------------------------EMCTNGLNPD 274
                  G + EA    +K+VD                            E C   L P+
Sbjct: 654 VSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPN 713

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            I Y I + G CK G ++ A      +  +G   DN  +  LI G+   G V EA R+  
Sbjct: 714 NIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRD 773

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML+ GL P+  TY  +I+  CK+ +     RL  ++   G  P V TYN L++G CK G
Sbjct: 774 EMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIG 833

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            +  A  L D M++ G+ P  +TY+ L+ G CKHG+ E   KL ++    G+ S    Y 
Sbjct: 834 NMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYC 893

Query: 452 SLVS---KSSKYRQ 462
           +LV    K+S Y +
Sbjct: 894 TLVQGGFKTSNYNE 907



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    + VL+   C+ GKI DA  + DE  + GL       N+LING+CK   + E   +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    ++PD Y+Y+ L++G C+E    +A  L  +M + G+ P  + + TL+ G C+
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G  D      +A +I   M   G+ PD++ Y+ LLDG  K  + E A  + K+++ RG 
Sbjct: 450 VGAFD------DALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 503

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               + F  +ISG C+ GK+VEAE +  +M  +G  PD  TY  +ID +CK  +    F+
Sbjct: 504 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK 563

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M  +   P++E YN+L++GL K  +L     LL  M   G+ P+ +TY  L++G C
Sbjct: 564 VKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWC 623

Query: 427 KHG 429
           K G
Sbjct: 624 KEG 626



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/536 (24%), Positives = 220/536 (41%), Gaps = 138/536 (25%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G+++D     Y   G +DDA++    + +   +     C  LI+   +        G   
Sbjct: 336 GVLIDG----YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVIT 391

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            ++D+   P  Y +N L+   C+EG   +A  + D+  + G+  T +++NTL+ G C+  
Sbjct: 392 RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG 451

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSAL--------------------------------- 205
             D+  ++  +M   G+ PD   YS L                                 
Sbjct: 452 AFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFN 511

Query: 206 --INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA---- 259
             I+GLCK  ++ +AE +  +M + G +P+ + + TLIDG+CK   +  A  +K A    
Sbjct: 512 TMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMERE 571

Query: 260 -------------------RKIVD------EMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              R++V+      EM   GL P+ +TY  L+DG+CKEG L+ A
Sbjct: 572 XISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD---------- 344
                EM + G+  + +  + ++SG  R G++ EA  ++++M+  G  PD          
Sbjct: 632 FSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIR 691

Query: 345 ----------------------DATYTMVIDCFCKNG----------------------- 359
                                 +  Y + I   CK G                       
Sbjct: 692 YAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFT 751

Query: 360 ------------DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
                       +    FRL  EM   G +P + TYNAL+NGLCK   +  A  L   + 
Sbjct: 752 YCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLH 811

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKY 460
             G+ P+ +TYN L++G+CK GN +   KL+    E+G+      Y++L++   K+
Sbjct: 812 QKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKH 867



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 23/276 (8%)

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE------RGLTPNDVI 236
           GF  + V +    RP+V +Y  L++ L +    D+    L+++ +      RG    +VI
Sbjct: 87  GF-FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRG----NVI 141

Query: 237 FTTLIDGHCKNGRIDMAGDM-----------KEARKIVDEMCTNGLNPDKITYTILLDGF 285
           +  L+  + +        DM           K A  + D M   G  P   +   LL+  
Sbjct: 142 WDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNL 201

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            K G+  +A  + ++MI+ GI  D    + +++ FC+ GKV EA   +++M  +G++P+ 
Sbjct: 202 VKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNI 261

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +I+ +   GD +    +LK M   G    V TY  L+ G CK  ++  A  +L  
Sbjct: 262 VTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRG 321

Query: 406 ML-DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           M  +  +VPD+  Y +L++G+C+ G  +D  +L  E
Sbjct: 322 MQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 357


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 192/394 (48%), Gaps = 44/394 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +          + ++L  G +PS   +  L+H LC      DA+ +F +  +RG
Sbjct: 16  LIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + V++N +I+  CK   L+E   L   M   G  PDV TY+ +++GLCK +R+++A 
Sbjct: 76  CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEAL 135

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           LL +EM   G TPN     T+I G C+  +ID      +A ++  EM    + PD  +Y 
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILGLCQQSKID------QACQVFHEMEAKDIPPDSWSYG 189

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+DG  K G L  A  + + M+  GI    V +  +I G C    + EA  + + M   
Sbjct: 190 ILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY---------------- 383
           G +P   T+ ++ID  CK G     FRLLK M  DGH+P V TY                
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 309

Query: 384 -------------------NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                              N L++GLCK G++K A  +LD M+  G  PD +TYN L+ G
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           HC+ G  E   +L S+   +GL  +   YT+LVS
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVS 403



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 165/325 (50%), Gaps = 6/325 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D A Q F  +        +     LID + +          +  +LD G +PS   +NV
Sbjct: 166 IDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNV 225

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++H +C    + +A  +F     +G   +  +FN LI+ HCK   LDE FRL   M   G
Sbjct: 226 VIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDG 285

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TYS LI+GLC   R+DDA  LL +M +R   P  V   TLI G CK GRI    
Sbjct: 286 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI---- 341

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             KEAR+++D M ++G +PD +TY  L+ G C+ G  E A ++  +M+ RG+  + V +T
Sbjct: 342 --KEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT 399

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL+SG C+  ++ EA  +  +M   G  P+  TYT +I  FC  G    G +L  EM   
Sbjct: 400 ALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCA 459

Query: 375 GHLPAVETYNALMNGLCKHGQLKNA 399
           G  P    Y  L   LCK G+   A
Sbjct: 460 GISPDHVVYGTLAAELCKSGRSARA 484



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 179/340 (52%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G+ P V  +N +M  LCK  ++++A ++F+E  + G      S NT+I G C+  
Sbjct: 105 KMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQS 164

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+  ++   ME   + PD ++Y  LI+GL K  +L++A  L   M + G+TP+ V + 
Sbjct: 165 KIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYN 224

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I G C      +A  + EA ++   M + G  P + T+ IL+D  CK G L+ A  + 
Sbjct: 225 VVIHGMC------LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLL 278

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G   D V ++ LISG C   +V +A  +L +M+K   KP   T   +I   CK 
Sbjct: 279 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 338

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  K    +L  M S G  P V TYN L++G C+ GQ + A  LL  M+  G+ P+ +TY
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398

Query: 419 NILLEGHCKHGN-PED---FDKLQSEKGLVSDYACYTSLV 454
             L+ G CK    PE    F +++S  G   +   YT+L+
Sbjct: 399 TALVSGLCKANRLPEACGVFAQMKS-SGCAPNLFTYTALI 437



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 183/363 (50%), Gaps = 9/363 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + +++     L  + E+   G +P+    N ++  LC++ KI  A  VF E   + 
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +   + S+  LI+G  KA  L+E ++L   M  SG+ P   TY+ +I+G+C    LD+A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M  +G  P+   F  LID HCK G++D      EA +++  M  +G  PD +TY+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLD------EAFRLLKRMTDDGHVPDVVTYS 294

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C    ++ A  + ++M+KR  +   V    LI G C+ G++ EA  +L  M+  
Sbjct: 295 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 354

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD  TY  ++   C+ G T+    LL +M + G  P V TY AL++GLCK  +L  A
Sbjct: 355 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
             +   M   G  P+  TY  L+ G C  G  +   KL  E    G+  D+  Y +L ++
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAE 474

Query: 457 SSK 459
             K
Sbjct: 475 LCK 477



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 152/303 (50%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + + +L+  L K GK+ +A  +F      G+  +AV++N +I+G C A  LDE   L
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G RP  +T++ LI+  CK  +LD+A  LL  M + G  P+ V ++TLI G C 
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R+D      +AR ++++M      P  +T   L+ G CK G ++ A ++   M+  G 
Sbjct: 303 IARVD------DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  L+ G CR G+   A  +L +M+  GL P+  TYT ++   CK         
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +  +M+S G  P + TY AL+ G C  GQ+     L   M+  G+ PD + Y  L    C
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 476

Query: 427 KHG 429
           K G
Sbjct: 477 KSG 479



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 126/237 (53%), Gaps = 6/237 (2%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M    + PD ++Y  LI+GL K  +L+DA  L  ++   G+TP+ V +T+LI G C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLC---- 56

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             MA    +AR++  +M   G  P  +TY +++D  CK G LE A D+ K+MI+ G   D
Sbjct: 57  --MANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  ++ G C+  +V EA  +  EM ++G  P+  ++  +I   C+        ++  
Sbjct: 115 VVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFH 174

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           EM +    P   +Y  L++GL K G+L  A  L   MLD G+ P  +TYN+++ G C
Sbjct: 175 EMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMC 231



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 91/158 (57%)

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           ++PD  +Y IL+DG  K G L  A ++ ++++  G+    VA+T+LI G C      +A 
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  +M + G  P   TY ++ID  CK G  +    L+K+M  DGH+P V TYN +M+GL
Sbjct: 66  ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           CK  +++ A +L + M  LG  P+  ++N ++ G C+ 
Sbjct: 126 CKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 163



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%)

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M +R +  D+ ++  LI G  + GK+ +A  + +++L  G+ P    YT +I   C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 L  +M   G  P+  TYN +++  CK G L+ A  L+  M++ G VPD +TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 421 LLEGHCKHGNPED 433
           +++G CK    E+
Sbjct: 121 VMDGLCKSSRVEE 133


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 207/395 (52%), Gaps = 11/395 (2%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + ++  Y  +G LD A+  FR   K +    A     LI  + +            E++ 
Sbjct: 63  NTILKAYCQIGDLDRALSHFR--GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQ 120

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
               P   V+N L+  LCK GKI  A+ V     +R      +++ +LI G C+   LDE
Sbjct: 121 KDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDE 180

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +L   M+ SG+ PD   Y+AL+NGLCK+N+L++   LL EM E G  P+   + T++ 
Sbjct: 181 ARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVA 240

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C++G+ + AG      KI+++M      PD +TY  L+DGFCK   ++ A  + ++M+
Sbjct: 241 CLCESGKYEEAG------KILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV 294

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            R      + +T LI GF R  ++ +A R++ +M K G+ PD  TY  ++D  CK G  +
Sbjct: 295 GRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLE 354

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               LL+ M      P V TY+ L+NGLCK G++ +A +LL+ ML+ G  P+ +T+N ++
Sbjct: 355 EAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMI 414

Query: 423 EGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           +G CK G  ++  K   L  E     D   Y++L+
Sbjct: 415 DGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLI 449



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 184/355 (51%), Gaps = 26/355 (7%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+V  +  L+    +  ++ DA  V ++  K G+    V++N L++G CKA  L+E   
Sbjct: 299 APTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHE 358

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L  VM      PDV TYS L+NGLCK  ++DDA LLL  M ERG  PN V F T+IDG C
Sbjct: 359 LLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFC 418

Query: 246 KNGRIDMAGD----MKE-------------------ARKIVDEMCTNGLNPDKITYTILL 282
           K G++D        MKE                   A ++ D     G++PDK +Y+ +L
Sbjct: 419 KAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSML 478

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G C  G +E A ++   M K+G    +  +  +I G C   +  EA +ML+ M + G +
Sbjct: 479 EGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCE 538

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  TY+++I+  CK    +    +L  M   G +P V TY +L++G CK  ++  A   
Sbjct: 539 PNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQC 598

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
             TM D G  PD + YNIL+ G C+ GN E   +  +L  EKG   D A Y SL+
Sbjct: 599 FKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 179/379 (47%), Gaps = 36/379 (9%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P     F+ E       PS   +  L+    + G  K    + +E   R      ++ NT
Sbjct: 5   PLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNT 64

Query: 170 LINGHCKAKNLDEGFR-LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           ++  +C+  +LD      +  M  S   P  +TY  LI+GLC+  R+D+A  LL EM ++
Sbjct: 65  ILKAYCQIGDLDRALSHFRGKMWCS---PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK 121

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGD-----------------------------MKEA 259
              P+  ++  LI G CK G+ID A +                             + EA
Sbjct: 122 DCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEA 181

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
           RK++++M  +GL PD + Y  LL+G CK+  LE    + +EM++ G E D  ++  +++ 
Sbjct: 182 RKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC 241

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C  GK  EA ++L +M++    PD  TY  ++D FCK        RLL++M      P 
Sbjct: 242 LCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPT 301

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-- 437
           V TY  L+ G  +  +L +A  +++ M   G+ PD +TYN LL+G CK G  E+  +L  
Sbjct: 302 VITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLE 361

Query: 438 -QSEKGLVSDYACYTSLVS 455
              EK    D   Y+ LV+
Sbjct: 362 VMVEKDCAPDVVTYSILVN 380



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 157/294 (53%), Gaps = 35/294 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P V  +++L++ LCK GK+ DA+++ +   +RG     V+FNT+I+G CKA  +DEG +
Sbjct: 369 APDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHK 428

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M+     PDV TYS LI+G CK NR+ DA  +L      G++P+   ++++++G C
Sbjct: 429 VLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLC 482

Query: 246 KNGRIDMAGDM-----------------------------KEARKIVDEMCTNGLNPDKI 276
             G+++ A ++                              EA K++  M   G  P+  
Sbjct: 483 STGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLY 542

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY+IL++G CK   +E A+++   M+++G   D   +T+LI GFC+  K+  A +  + M
Sbjct: 543 TYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
              G +PD   Y ++I  FC++G+ +    +++ M   G  P   TY +LM  L
Sbjct: 603 RDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 6/194 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP    ++ ++  LC  GK+++AQ V D   K+G   T+  +  +I G C  +  DE 
Sbjct: 466 GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEA 525

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++  VM   G  P++YTYS LINGLCK  R++DA  +L  M E+G  P+   +T+LIDG
Sbjct: 526 LKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDG 585

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK  ++D       A +    M  +G  PDK+ Y IL+ GFC+ G++E A+++ + M++
Sbjct: 586 FCKINKMD------AAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLE 639

Query: 304 RGIELDNVAFTALI 317
           +G   D   + +L+
Sbjct: 640 KGCNPDAATYFSLM 653



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 31/211 (14%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +YS+M+  L +     +A++++ L+ +K+G   ++S +A I+        G + D     
Sbjct: 473 SYSSMLEGLCSTGKVEEAQEVMDLM-TKQGCPPTSSHYALII--------GGLCD----- 518

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEIL 121
            V+ G  D+A++  +++ +       RGC         LI+ + +T      +     +L
Sbjct: 519 -VERG--DEALKMLQVMSE-------RGCEPNLYTYSILINGLCKTKRVEDAINVLDVML 568

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P V  +  L+   CK  K+  A   F      G     +++N LI+G C++ N++
Sbjct: 569 EKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVE 628

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           +   +  +M   G  PD  TY +L+  L  E
Sbjct: 629 KAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 11/368 (2%)

Query: 92  IPARGCRC--LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
           IP   C C  L++   R +  ++ L F  +++  G+ P +  F  L++  C+  +I DA 
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDAL 171

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            +FD   + G     V +NT+I+G CK+K +D    L + ME  G+RPD  TY++LI+GL
Sbjct: 172 YMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGL 231

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C   R DDA  ++  M +R + P+   F  LID   K GRI       EA ++ +EM   
Sbjct: 232 CNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRI------SEAEELYEEMIRR 285

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            L+PD +TY++L+ G C    L+ A  +   M+ +G   D V ++ LI+G+C+  KV   
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++  EM + G+  +  TYT++I  +C+ G       + K M   G  P + TYN L++G
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHG 405

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LC +G+++ A ++L  M   G+  D +TYNI++ G CK G   D   L      KGL  D
Sbjct: 406 LCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPD 465

Query: 447 YACYTSLV 454
              YT+++
Sbjct: 466 IWTYTAMM 473



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 29/335 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F+ L+  + K  K      ++++    G+     + N L+N  C+   L      
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ T+ +L+NG C+ +R+ DA  +   M E G  PN VI+ T+IDG CK
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           + ++D A                             G   +A ++V  M    + PD  T
Sbjct: 199 SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFT 258

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  L+D   KEG +  A ++ +EMI+R ++ D V ++ LI G C   ++ EAE+M   M+
Sbjct: 259 FNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMV 318

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  PD  TY+++I+ +CK+   + G +L  EM   G +    TY  L+ G C+ G+L 
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLN 378

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            A  +   M+  GV P+ ITYN+LL G C +G  E
Sbjct: 379 VAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 10/253 (3%)

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           L NG+ +  +LDD+  L   M +    P+   F+ L+    K  + D+   + E  +++ 
Sbjct: 53  LRNGI-RYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQML- 110

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
                G+  +  T  ILL+ FC+   L  AL    +M+K G E D V F +L++GFCRG 
Sbjct: 111 -----GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGD 165

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++ +A  M   M+++G +P+   Y  +ID  CK+        LL  M  DG  P   TYN
Sbjct: 166 RIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYN 225

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
           +L++GLC  G+  +A  ++  M    + PD  T+N L++   K G   + ++L  E   +
Sbjct: 226 SLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRR 285

Query: 442 GLVSDYACYTSLV 454
            L  D   Y+ L+
Sbjct: 286 SLDPDIVTYSLLI 298



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +  + E+   G   +   + VL+   C+ GK+  A+ +F      G+    +++N L++G
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHG 405

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C    +++   + + M+ SGM  D+ TY+ +I G+CK   + DA  L   +  +GLTP+
Sbjct: 406 LCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPD 465

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
              +T ++ G  K G   + G   EA  +  +M  +G+ P++
Sbjct: 466 IWTYTAMMLGLYKKG---LRG---EADALFRKMKEDGILPNE 501


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/430 (31%), Positives = 215/430 (50%), Gaps = 29/430 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---HLPGLVLD 63
           L   S +   L     +  A DL+  I+  +   S  ++  SI++   +       ++ D
Sbjct: 101 LDVLSALAVNLCNSNWYGPASDLIKCII--RNSDSPLAVLGSIVKCYRSCNGSPNSVIFD 158

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            LM  Y  +GFL +A+  F   +   FR     C  L+  +++ N   +    +  +  +
Sbjct: 159 MLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAH 218

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
              P VY +  ++   CK G +KDA+ V  E G+                  KA+ LDE 
Sbjct: 219 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE------------------KARLLDEA 260

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             LK  M   G+ PD+YTY  LING C E R  +A+L+L EM + GL P  + +  LIDG
Sbjct: 261 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 320

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G      D+++A +I DEM   G+  + I +  LL+G CK G +E AL+I +EM++
Sbjct: 321 FMRQG------DIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME 374

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+E D+  ++ LI G CRG  +  A  +L EM K  L P   TY+++I+  C+ G+ + 
Sbjct: 375 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQG 434

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +L+EM  +G  P    Y  LM    K G+++ + M+L+ M + G++PD   YN L+ 
Sbjct: 435 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLII 494

Query: 424 GHCKHGNPED 433
           G CK    E+
Sbjct: 495 GFCKAKRMEE 504



 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 183/312 (58%), Gaps = 7/312 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  ++VL+H L + GK+ +A  +F E  ++GL   A ++N+LI+G CK  N+D+  +L  
Sbjct: 591 VQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE 650

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ PD+ TY+ LI+GLCK   ++ A+ L  ++  RGLTPN V +  ++DG+CK  
Sbjct: 651 EMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK-- 708

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
               + +   A ++++EM   G+ PD   Y ++L+  CKE   E ALD+ +EM+++G   
Sbjct: 709 ----SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA- 763

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V+F  LI G+C+ GK+ EA  +L EM++    P+  TYT +ID  CK G      RL 
Sbjct: 764 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 823

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM+    +P  +TY +L++G    G +   + L + M+  G+ PD +TY ++++ +C+ 
Sbjct: 824 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCRE 883

Query: 429 GNPEDFDKLQSE 440
           GN  +  KL+ E
Sbjct: 884 GNVMEACKLKDE 895



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 182/333 (54%), Gaps = 9/333 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+V  ++V+++ LC+ G ++    +  E    GL   AV + TL+  H K   ++E   
Sbjct: 413 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 472

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ PDV+ Y++LI G CK  R+++A   L EM ER L PN   +   IDG+ 
Sbjct: 473 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 532

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K      AG+M+ A +  +EM + G+ P+   YT L++G CKEG++  A  + + ++ R 
Sbjct: 533 K------AGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 586

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D   ++ LI G  R GK+ EA  +  E+ + GL P+  TY  +I   CK G+     
Sbjct: 587 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKAS 646

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +LL+EM   G  P + TYN L++GLCK G+++ A  L D +   G+ P+ +TY  +++G+
Sbjct: 647 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 706

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           CK  NP    +L  E   +G+  D   Y  +++
Sbjct: 707 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN 739



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 186/349 (53%), Gaps = 26/349 (7%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+  +F++LM    K G + +A  VF          + +S N+L+    K   ++  ++
Sbjct: 151 SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWK 210

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER----------------- 228
           +   M    + PDVYTY+ +I+  CK   + DA+ +L EM E+                 
Sbjct: 211 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDK 270

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL P+   +  LI+G C   R       +EA+ ++ EM   GL P+ ITY  L+DGF ++
Sbjct: 271 GLVPDLYTYDILINGFCMEKR------SREAKLMLLEMIDVGLKPEPITYNALIDGFMRQ 324

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           GD+E A  I+ EM+  GIE + + +  L++G C+ GK+ +A  +++EM++ G++PD  TY
Sbjct: 325 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY 384

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           +++I+  C+  +    F LL EM+     P V TY+ ++NGLC+ G L+  N +L  M+ 
Sbjct: 385 SLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVM 444

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            G+ P+ + Y  L+  H K G  E+   +     E+G++ D  CY SL+
Sbjct: 445 NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLI 493



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 184/378 (48%), Gaps = 43/378 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+  V+  LM    KEG++++++M+ +   ++G+      +N+LI G CKAK
Sbjct: 441 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAK 500

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++E       M    +RP+ +TY A I+G  K   ++ A+   +EM   G+ PN  I+T
Sbjct: 501 RMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYT 560

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+GHCK G +       EA  +   + +  +  D  TY++L+ G  + G +  A  I 
Sbjct: 561 ALIEGHCKEGNV------TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIF 614

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E+ ++G+  +   + +LISG C+ G V +A ++L EM   G+ PD  TY ++ID  CK 
Sbjct: 615 SELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA 674

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    L  ++   G  P   TY A+++G CK      A  LL+ ML  GV PD   Y
Sbjct: 675 GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 734

Query: 419 NI----------------------------------LLEGHCKHGNPEDFDKLQS---EK 441
           N+                                  L+EG+CK G  ++ + L     EK
Sbjct: 735 NVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK 794

Query: 442 GLVSDYACYTSLVSKSSK 459
             + ++  YTSL+  + K
Sbjct: 795 QFIPNHVTYTSLIDHNCK 812



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 176/356 (49%), Gaps = 8/356 (2%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP + +  AL+  +   G + +A   FR +         +    LI  + R        G
Sbjct: 553 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 612

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+ + G  P+ + +N L+   CK+G +  A  + +E   +G++   V++N LI+G C
Sbjct: 613 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 672

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  ++    L   +EG G+ P+  TY+A+++G CK      A  LL EM  RG+ P+  
Sbjct: 673 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAF 732

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           I+  +++  CK  + + A D+        EM   G     +++  L++G+CK G L+ A 
Sbjct: 733 IYNVILNFCCKEEKFEKALDL------FQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEAN 785

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + +EMI++    ++V +T+LI   C+ G + EA+R+  EM +  + P   TYT ++  +
Sbjct: 786 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 845

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
              G+      L +EM + G  P   TY  +++  C+ G +  A  L D +L  G+
Sbjct: 846 HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 901



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 13/278 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D   ++  PT       E+L  G  P  +++NV+++  CKE K + A  +F E  ++G
Sbjct: 702 MVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG 761

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             A+ VSFNTLI G+CK+  L E   L   M      P+  TY++LI+  CK   + +A+
Sbjct: 762 F-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAK 820

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM ER + P    +T+L+ G+         G+M E   + +EM   G+ PDK+TY 
Sbjct: 821 RLWLEMQERNVMPTAKTYTSLLHGYHN------IGNMSEVSALFEEMVAKGIEPDKMTYY 874

Query: 280 ILLDGFCKEGDLESALDIRKEMI------KRGIELDNVAFTALISGFCRGGKVVEAERML 333
           +++D +C+EG++  A  ++ E++      K G  L     + +  GF   G + EA  +L
Sbjct: 875 VMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVL 934

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           R M+K G   +  +   ++D      +++    LLK+M
Sbjct: 935 RSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 972


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 191/394 (48%), Gaps = 44/394 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +          + ++L  G +PS   +  L+H LC      DA+ +F +  +RG
Sbjct: 16  LIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + V++N +I+  CK   L+E   L   M   G  PDV TY+ +++GLCK  R+++A 
Sbjct: 76  CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEAL 135

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           LL +EM   G TPN     T+I G C+  +ID      +A ++  EM    + PD  +Y 
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILGLCQQSKID------QACQVFHEMEARDIPPDSWSYG 189

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+DG  K G L  A  + + M+  GI    V +  +I G C    + EA  + + M   
Sbjct: 190 ILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY---------------- 383
           G +P   T+ ++ID  CK G     FRLLK M  DGH+P V TY                
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 309

Query: 384 -------------------NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                              N L++GLCK G++K A  +LD M+  G  PD +TYN L+ G
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           HC+ G  E   +L S+   +GL  +   YT+LVS
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVS 403



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 165/325 (50%), Gaps = 6/325 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D A Q F  +        +     LID + +          +  +LD G +PS   +NV
Sbjct: 166 IDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNV 225

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++H +C    + +A  +F     +G   +  +FN LI+ HCK   +DE FRL   M   G
Sbjct: 226 VIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDG 285

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TYS LI+GLC   R+DDA  LL +M +R   P  V   TLI G CK GRI    
Sbjct: 286 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI---- 341

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             KEAR+++D M ++G +PD +TY  L+ G C+ G  E A ++  +M+ RG+  + V +T
Sbjct: 342 --KEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT 399

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL+SG C+  ++ EA  +  +M   G  P+  TYT +I  FC  G    G +L  EM   
Sbjct: 400 ALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCA 459

Query: 375 GHLPAVETYNALMNGLCKHGQLKNA 399
           G  P    Y  L   LCK G+   A
Sbjct: 460 GISPDHVVYGTLAAELCKSGRSARA 484



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 180/340 (52%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G+ P V  +N +M  LCK G++++A ++F+E  + G      S NT+I G C+  
Sbjct: 105 KMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQS 164

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+  ++   ME   + PD ++Y  LI+GL K  +L++A  L   M + G+TP+ V + 
Sbjct: 165 KIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYN 224

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I G C      +A  + EA ++   M + G  P + T+ IL+D  CK G ++ A  + 
Sbjct: 225 VVIHGMC------LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLL 278

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G   D V ++ LISG C   +V +A  +L +M+K   KP   T   +I   CK 
Sbjct: 279 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 338

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  K    +L  M S G  P V TYN L++G C+ GQ + A  LL  M+  G+ P+ +TY
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398

Query: 419 NILLEGHCKHGN-PED---FDKLQSEKGLVSDYACYTSLV 454
             L+ G CK    PE    F +++S  G   +   YT+L+
Sbjct: 399 TALVSGLCKANRLPEACGVFAQMKS-SGCAPNLFTYTALI 437



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 182/363 (50%), Gaps = 9/363 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + ++      L  + E+   G +P+    N ++  LC++ KI  A  VF E   R 
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +   + S+  LI+G  KA  L+E ++L   M  SG+ P   TY+ +I+G+C    LD+A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M  +G  P+   F  LID HCK G++D      EA +++  M  +G  PD +TY+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMD------EAFRLLKRMTDDGHVPDVVTYS 294

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C    ++ A  + ++M+KR  +   V    LI G C+ G++ EA  +L  M+  
Sbjct: 295 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 354

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD  TY  ++   C+ G T+    LL +M + G  P V TY AL++GLCK  +L  A
Sbjct: 355 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
             +   M   G  P+  TY  L+ G C  G  +   KL  E    G+  D+  Y +L ++
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAE 474

Query: 457 SSK 459
             K
Sbjct: 475 LCK 477



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 152/303 (50%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + + +L+  L K GK+ +A  +F      G+  +AV++N +I+G C A  LDE   L
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G RP  +T++ LI+  CK  ++D+A  LL  M + G  P+ V ++TLI G C 
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R+D      +AR ++++M      P  +T   L+ G CK G ++ A ++   M+  G 
Sbjct: 303 IARVD------DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  L+ G CR G+   A  +L +M+  GL P+  TYT ++   CK         
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +  +M+S G  P + TY AL+ G C  GQ+     L   M+  G+ PD + Y  L    C
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 476

Query: 427 KHG 429
           K G
Sbjct: 477 KSG 479



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 146/304 (48%), Gaps = 44/304 (14%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M    + PD ++Y  LI+GL K  +L+DA  L  ++   G+TP+ V +T+LI G C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLC---- 56

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             MA    +AR++  +M   G  P  +TY +++D  CK G LE A D+ K+MI+ G   D
Sbjct: 57  --MANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPD 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVG----------------------------- 340
            V +  ++ G C+ G+V EA  +  EM ++G                             
Sbjct: 115 VVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFH 174

Query: 341 ------LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
                 + PD  +Y ++ID   K G     ++L + M   G  P+  TYN +++G+C   
Sbjct: 175 EMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAY 234

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYT 451
            L  A  L  +M   G  P   T+NIL++ HCK G  ++  +L    ++ G V D   Y+
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYS 294

Query: 452 SLVS 455
           +L+S
Sbjct: 295 TLIS 298


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 212/438 (48%), Gaps = 44/438 (10%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP------------ 110
           +A+M V VD G+ D A + +  +R              +    +T+ P            
Sbjct: 115 NAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSS 174

Query: 111 -----------TVTLGFYLE------------ILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
                      TV  GFY E            +L  G S  +  FN L+  LCK+G +K+
Sbjct: 175 QGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKE 234

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
            + + D+  KRG+     ++N  I G C+   LD   R+   +   G +PDV TY+ LI 
Sbjct: 235 CEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIY 294

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           GLCK ++  +AE+ L +M   GL P+   + TLI G+CK G + +A       +IV +  
Sbjct: 295 GLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLA------ERIVGDAV 348

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
            NG  PD+ TY  L+DG C EG+   AL +  E + +GI+ + + +  LI G    G ++
Sbjct: 349 FNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMIL 408

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA ++  EM + GL P+  T+ ++++  CK G       L+K M S G+ P + T+N L+
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF---DKLQSEKGLV 444
           +G     +++NA  +LD MLD GV PD  TYN LL G CK    ED     K   EKG  
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528

Query: 445 SDYACYTSLVSKSSKYRQ 462
            +   +  L+    +YR+
Sbjct: 529 PNLFTFNILLESLCRYRK 546



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 162/300 (54%), Gaps = 7/300 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P V  FN+L++ LCK G + DA  +      +G      +FN LI+G+    
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++    +  VM  +G+ PDVYTY++L+NGLCK ++ +D       M E+G  PN   F 
Sbjct: 476 KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFN 535

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++  C+  ++D      EA  +++EM    +NPD +T+  L+DGFCK GDL+ A  + 
Sbjct: 536 ILLESLCRYRKLD------EALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589

Query: 299 KEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           ++M +   +      +  +I  F     V  AE++ +EM+   L PD  TY +++D FCK
Sbjct: 590 RKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+   G++ L EM  +G +P++ T   ++N LC   ++  A  ++  M+  G+VP+ + 
Sbjct: 650 TGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVN 709



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 172/339 (50%), Gaps = 10/339 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G  P V  +N L++ LCK  K ++A++   +    GL   + ++NTLI G+CK   
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +    R+      +G  PD +TY +LI+GLC E   + A  L +E   +G+ PN +++ T
Sbjct: 337 VQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNT 396

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G    G I       EA ++ +EM   GL P+  T+ IL++G CK G +  A  + K
Sbjct: 397 LIKGLSNQGMI------LEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVK 450

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            MI +G   D   F  LI G+    K+  A  +L  ML  G+ PD  TY  +++  CK  
Sbjct: 451 VMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTS 510

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +      K M   G  P + T+N L+  LC++ +L  A  LL+ M +  V PD +T+ 
Sbjct: 511 KFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFG 570

Query: 420 ILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            L++G CK+G+ +     F K++    + S    Y  ++
Sbjct: 571 TLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII 609



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + +  L+  LC EG+   A  +F+E   +G+    + +NTLI G      + E 
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L + M   G+ P+V T++ L+NGLCK   + DA+ L+  M  +G  P+   F  LI G
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +    +      M+ A +I+D M  NG++PD  TY  LL+G CK    E  ++  K M++
Sbjct: 471 YSTQLK------MENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVE 524

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   +   F  L+   CR  K+ EA  +L EM    + PD  T+  +ID FCKNGD   
Sbjct: 525 KGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDG 584

Query: 364 GFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            + L ++M     + +   TYN +++   +   +  A  L   M+D  + PD  TY +++
Sbjct: 585 AYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMV 644

Query: 423 EGHCKHGN 430
           +G CK GN
Sbjct: 645 DGFCKTGN 652



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 134/268 (50%), Gaps = 14/268 (5%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  GY P ++ FN+L+H    + K+++A  + D     G+     ++N+L+NG CK   
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            ++       M   G  P+++T++ L+  LC+  +LD+A  LL EM  + + P+ V F T
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571

Query: 240 LIDGHCKNGRIDMA----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           LIDG CKNG +D A      M+EA K+         +    TY I++  F ++ ++  A 
Sbjct: 572 LIDGFCKNGDLDGAYTLFRKMEEAYKV---------SSSTPTYNIIIHAFTEKLNVTMAE 622

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + +EM+ R +  D   +  ++ GFC+ G V    + L EM++ G  P   T   VI+C 
Sbjct: 623 KLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682

Query: 356 CKNGDTKTGFRLLKEMRSDGHLP-AVET 382
           C          ++  M   G +P AV T
Sbjct: 683 CVEDRVYEAAGIIHRMVQKGLVPEAVNT 710



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 160/337 (47%), Gaps = 10/337 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNL 180
           + G+  ++  +  ++ KL   GK +  + V  +  +  G H     +   +  + +   +
Sbjct: 33  EVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKV 92

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   +   M+     P V++Y+A+++ L      D A  +   M +RG+TP+   FT  
Sbjct: 93  QEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIR 152

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           +   CK  R         A ++++ M + G   + + Y  ++ GF +E       ++  +
Sbjct: 153 MKSFCKTSRP------HAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGK 206

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+  G+ L    F  L+   C+ G V E E++L +++K G+ P+  TY + I   C+ G+
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                R++  +   G  P V TYN L+ GLCK+ + + A + L  M++ G+ PD  TYN 
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326

Query: 421 LLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           L+ G+CK G  +  +++  +    G V D   Y SL+
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLI 363



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 15/238 (6%)

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
           CE  +   + I + L+D          +G   +A K+   M   G+ PD  ++TI +  F
Sbjct: 107 CEPTVFSYNAIMSVLVD----------SGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSF 156

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK     +AL +   M  +G E++ VA+  ++ GF       E   +  +ML  G+    
Sbjct: 157 CKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCL 216

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
           +T+  ++   CK GD K   +LL ++   G LP + TYN  + GLC+ G+L  A  ++  
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFD----KLQSEKGLVSDYACYTSLVSKSSK 459
           +++ G  PD ITYN L+ G CK+   ++ +    K+ +E GL  D   Y +L++   K
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTLIAGYCK 333


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 188/353 (53%), Gaps = 11/353 (3%)

Query: 108 NLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           +L  V LGF +  +I   G+ PS+  FN L++ LC EG+I +A    D    RG   T  
Sbjct: 151 HLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVY 210

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +   ++NG CK             M      P+V +YS +I+ LCK   +++A  L + M
Sbjct: 211 THTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHM 270

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G++P  V + +LI G C +G+       K+A  +  EM    + PD +T++IL+D  
Sbjct: 271 RSIGISPTVVTYNSLIYGMCNSGQ------WKQASILFKEMLEWNMKPDVVTFSILVDAL 324

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CKEG +  AL +  +MI+  +E D V +++LI G C+     E+  +L EML   ++PD 
Sbjct: 325 CKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDV 384

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            T+++ +D FCK G       ++  M   G  P V TYN+LM+G C H Q+  A  + D 
Sbjct: 385 VTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDI 444

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           M++ G  PD ++YNIL++G+CK    ++  +L    S KGL  +   +T+L+S
Sbjct: 445 MVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLIS 497



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 179/341 (52%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +  L    +  +  +   G SP+V  +N L++ +C  G+ K A ++F E  +  
Sbjct: 250 IIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWN 309

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V+F+ L++  CK   + E   +   M    M PD+ TYS+LI+G+CK +   ++ 
Sbjct: 310 MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESS 369

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL+EM  R + P+ V F+  +D  CK G +       EA+ I++ M   GL P+ +TY 
Sbjct: 370 TLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVS------EAQSIINLMIERGLRPNVVTYN 423

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG+C    ++ A  +   M+ +G   D +++  LI G+C+  ++ EA+++  EM   
Sbjct: 424 SLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHK 483

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL P+  T+T +I   C+ G       L K+M S G  P + TY+ L++G CKHG L  A
Sbjct: 484 GLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEA 543

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             L + +    + P+ +   ILL G CK G  ED  +L S 
Sbjct: 544 LALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSS 584



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 178/351 (50%), Gaps = 15/351 (4%)

Query: 118 LEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +E LDY    GY P+VY   ++++ LCK GK   A +   +  +       VS++ +I+ 
Sbjct: 194 MEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDS 253

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK + ++E   L   M   G+ P V TY++LI G+C   +   A +L  EM E  + P+
Sbjct: 254 LCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPD 313

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F+ L+D  CK G +       EA  +  +M    + PD +TY+ L+ G CK    + 
Sbjct: 314 VVTFSILVDALCKEGVV------LEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKE 367

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           +  +  EM+ R I  D V F+  +  FC+ G V EA+ ++  M++ GL+P+  TY  ++D
Sbjct: 368 SSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMD 427

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +C +       ++   M + G  P V +YN L+ G CK  ++  A  L D M   G+ P
Sbjct: 428 GYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTP 487

Query: 414 DDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSKY 460
           + IT+  L+ G C+ G P    E F K+ S  G   D   Y++L+S   K+
Sbjct: 488 NSITHTTLISGLCQAGRPYAAKELFKKMGSH-GCPPDLITYSTLLSGFCKH 537



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 165/299 (55%), Gaps = 6/299 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+L++   P V  F++L+  LCKEG + +A  VF +  +  +    V++++LI+G C
Sbjct: 301 LFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVC 360

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K+    E   L + M    +RPDV T+S  ++  CK+  + +A+ +++ M ERGL PN V
Sbjct: 361 KSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVV 420

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + +L+DG+C + ++D      EARK+ D M   G  PD ++Y IL+ G+CK   ++ A 
Sbjct: 421 TYNSLMDGYCLHSQMD------EARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAK 474

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM  +G+  +++  T LISG C+ G+   A+ + ++M   G  PD  TY+ ++  F
Sbjct: 475 QLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGF 534

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           CK+G       L + ++     P       L+ G+CK G+L++A  L  ++    + PD
Sbjct: 535 CKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 165/307 (53%), Gaps = 6/307 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +++++  LCK   + +A  +F      G+  T V++N+LI G C +    +   L
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    M+PDV T+S L++ LCKE  + +A  +  +M +  + P+ V +++LI G CK
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCK 361

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +         KE+  +++EM +  + PD +T++I +D FCK+G +  A  I   MI+RG+
Sbjct: 362 SSL------WKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGL 415

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V + +L+ G+C   ++ EA ++   M+  G  PD  +Y ++I  +CK+       +
Sbjct: 416 RPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQ 475

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  EM   G  P   T+  L++GLC+ G+   A  L   M   G  PD ITY+ LL G C
Sbjct: 476 LFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFC 535

Query: 427 KHGNPED 433
           KHG+ ++
Sbjct: 536 KHGHLDE 542



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 39/352 (11%)

Query: 140 CKEGKIK---DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
           CK G      DA   F++            FN L+    + K+ D    +   ME  G+ 
Sbjct: 77  CKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVS 136

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
             VYT + LIN LC  + +     +L ++ + G  P+ + F TLI+G C  GRI  A  M
Sbjct: 137 CSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEA--M 194

Query: 257 KEARKIVDE----------MCTNGL---------------------NPDKITYTILLDGF 285
           ++   I+            M  NGL                      P+ ++Y+I++D  
Sbjct: 195 EQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSL 254

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK   +  A+D+   M   GI    V + +LI G C  G+  +A  + +EML+  +KPD 
Sbjct: 255 CKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDV 314

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            T+++++D  CK G       +  +M      P + TY++L++G+CK    K ++ LL+ 
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNE 374

Query: 406 MLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           ML   + PD +T++I ++  CK G     +    L  E+GL  +   Y SL+
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLM 426


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 176/307 (57%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+  V+  ++  LC +G++ DA  V ++     +      + T+++G C   +L   
Sbjct: 324 GVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSA 383

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R    M+  G+  D  TY+ LINGLC+   L +AE +L EM  R L  ++V +T L+DG
Sbjct: 384 RRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDG 443

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G+      M EA ++ + M   G+ P+ +TYT L DG CK+GD+++A ++  EM  
Sbjct: 444 YCKRGK------MAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSN 497

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+EL+   + +LI+G C+ G + +A R + +M   GLKPD  TYT +ID  CK+G+   
Sbjct: 498 KGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDR 557

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL+EM  +G  P + TYN LMNG C  G+++    LL+ ML+  + P+  TYN L++
Sbjct: 558 AHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMK 617

Query: 424 GHCKHGN 430
            +C   N
Sbjct: 618 QYCIGNN 624



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 201/413 (48%), Gaps = 55/413 (13%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
            R +R++        C  ++ R+         L   +E+       +V  +N+L+  LC 
Sbjct: 223 LRRVRQYGISPSPEACNAVLSRL--------PLDEAIELFQGLPDKNVCSYNILLKVLCG 274

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
            G+++DA+ +FDE          V++  LI+G+C    L+   +L   M   G+ P+   
Sbjct: 275 AGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATV 331

Query: 202 YSALINGLCKENRLDDA----ELLLH-------------------------------EMC 226
           Y++++  LC + R+ DA    E ++H                               EM 
Sbjct: 332 YTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQ 391

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
            +GL  + V +TTLI+G C+      AG++KEA K++ EM    L+ D++TYT+L+DG+C
Sbjct: 392 RKGLATDGVTYTTLINGLCR------AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYC 445

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K G +  A  +   M++RG+  + V +TAL  G C+ G V  A  +L EM   GL+ +  
Sbjct: 446 KRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNAC 505

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           TY  +I+  CK G      R + +M + G  P V TY  L++ LCK G+L  A+ LL  M
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
           LD G+ P  +TYN+L+ G C  G  E   KL     EK +  +   Y SL+ +
Sbjct: 566 LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQ 618



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 153/293 (52%), Gaps = 6/293 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G +P+V  +  L   LCK+G ++ A  +  E   +GL   A ++N+LING CKA  
Sbjct: 460 MVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 519

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD+  R  + M+ +G++PDVYTY+ LI+ LCK   LD A  LL EM + G+ P  V +  
Sbjct: 520 LDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNV 579

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L++G C +GR++        +K+++ M    ++P+  TY  L+  +C   +++S  +I K
Sbjct: 580 LMNGFCMSGRVE------GGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  R +E +   +  LI G C+   + EA+    EM++ G +   ++Y+ +I    K  
Sbjct: 634 GMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKK 693

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
                 +L  +MR +G     + YN  ++       L+    L D +++  +V
Sbjct: 694 KFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIV 746



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 161/346 (46%), Gaps = 29/346 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           ++ E+   G +     +  L++ LC+ G++K+A+ V  E   R L    V++  L++G+C
Sbjct: 386 WFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYC 445

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E F++ + M   G+ P+V TY+AL +GLCK+  +  A  LLHEM  +GL  N  
Sbjct: 446 KRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNAC 505

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
            + +LI+G CK G +D A                             G++  A  ++ EM
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
             NG+ P  +TY +L++GFC  G +E    + + M+++ I  +   + +L+  +C G  +
Sbjct: 566 LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNM 625

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
                + + M    ++P++ TY ++I   CK    K       EM   G      +Y+AL
Sbjct: 626 KSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSAL 685

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +  L K  +   A  L   M   G   +   YN  ++ +    N E
Sbjct: 686 IRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLE 731


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 188/358 (52%), Gaps = 14/358 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
            G   E++  G   SVYVF VL+  LCK G + +A+ +FDE   RG     V+   L+ G
Sbjct: 240 FGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGG 299

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +C   N+D    L   +   G + DV+TY+  I+G CK  R+ DA  +  EMC  G+ PN
Sbjct: 300 YCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPN 359

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V + +LID  CK      AG++  A +IV  M  +GL PD +T  ILLDG CK   L+ 
Sbjct: 360 IVTYNSLIDCLCK------AGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQ 413

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+ +  ++++ G+  D  ++T LI G C   ++ EA  +LR+M    L P   TY+ +ID
Sbjct: 414 AILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLID 473

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C++G     +RLL EM   G LP   TY+ L++ L K   L  A  L + M+  G+ P
Sbjct: 474 GLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEP 533

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV-----SKSSKYRQK 463
           D + Y I+++G+CK    ++   L  E   K LV D   YT L      S S+ Y  K
Sbjct: 534 DVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWK 591



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 188/364 (51%), Gaps = 11/364 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + R         FY E++  G  P+ + +  L+  LC  GK  +   + DE  +RG
Sbjct: 191 VIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRG 250

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  +   F  LI+G CK   L E   +   M   G  P++ T +AL+ G C +  +D A 
Sbjct: 251 LDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMAR 310

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   + E G   +   +   I G+CK GR+      ++A ++ DEMC  G+ P+ +TY 
Sbjct: 311 ELFDAIGEWGFKRDVWTYNVFIHGYCKVGRV------RDAVRVFDEMCREGVVPNIVTYN 364

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+D  CK G++  A +I K M + G+  D V    L+ G C+  ++ +A  +  ++++ 
Sbjct: 365 SLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVES 424

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL PD  +YT++I   C +        LL++M     +P + TY+ L++GLC+ G++ NA
Sbjct: 425 GLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNA 484

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             LL+ M   G +PD ITY+ILL+   K  + ++    F+++  ++GL  D  CYT ++ 
Sbjct: 485 WRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQM-IKRGLEPDVMCYTIMID 543

Query: 456 KSSK 459
              K
Sbjct: 544 GYCK 547



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 173/338 (51%), Gaps = 16/338 (4%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I ++G+   V+ +NV +H  CK G+++DA  VFDE  + G+    V++N+LI+  CKA  
Sbjct: 316 IGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGE 375

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +   + +   M  SG+ PD+ T   L++GLCK  RLD A LL +++ E GLTP+   +T 
Sbjct: 376 VSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTI 435

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C + R      M EA  ++ +M    L P  +TY+ L+DG C+ G + +A  +  
Sbjct: 436 LIHGCCTSRR------MGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLN 489

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  +G   D + ++ L+    +   + EA  +  +M+K GL+PD   YT++ID +CK+ 
Sbjct: 490 EMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSE 549

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  L +EM     +P + TY  L N + K G        ++ + D+   P  + Y 
Sbjct: 550 RIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKY- 608

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKS 457
             L   CK    E  D     K L S++A Y   +  S
Sbjct: 609 --LAALCK---SEHLDY----KCLASEFASYAGSLQTS 637



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 177/364 (48%), Gaps = 19/364 (5%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           + +   + +IL  GY       N ++  LC  G +  A    DE    G     VS+  L
Sbjct: 89  SFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGIL 148

Query: 171 INGHCKAKNLDEGFRLKSVM--------EGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           ING C+   ++E   L  ++        +G  ++ +V  YS +I+ LC+   +D+     
Sbjct: 149 INGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFY 208

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
           +EM   G+ PN+  + +LI G C        G   E   +VDEM   GL+     +T+L+
Sbjct: 209 NEMMGNGVCPNEFTYGSLIRGLCG------VGKFLEGFGLVDEMIRRGLDVSVYVFTVLI 262

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK G L  A ++  EM+ RG E + V  TAL+ G+C  G V  A  +   + + G K
Sbjct: 263 DGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFK 322

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            D  TY + I  +CK G  +   R+  EM  +G +P + TYN+L++ LCK G++  A  +
Sbjct: 323 RDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEI 382

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSS 458
           + TM   G+ PD +T  ILL+G CK    +     F++L  E GL  D   YT L+    
Sbjct: 383 VKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQL-VESGLTPDVWSYTILIHGCC 441

Query: 459 KYRQ 462
             R+
Sbjct: 442 TSRR 445



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 6/194 (3%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  L+D + ++      +  + ++++ G +P V+ + +L+H  C   ++ +A  +  +  
Sbjct: 398 CCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMH 457

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            + L    V+++ LI+G C++  +   +RL + M   G  PD  TYS L++ L K+  LD
Sbjct: 458 LKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLD 517

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A  L ++M +RGL P+ + +T +IDG+CK+ RID      EA  +  EM    L PD +
Sbjct: 518 EAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERID------EAINLFREMHMKNLVPDIV 571

Query: 277 TYTILLDGFCKEGD 290
           TYTIL +   K G 
Sbjct: 572 TYTILFNAVFKSGS 585



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 8/184 (4%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G +  +  I  ++   G   D +    +L G C  G +  AL+   E++  G  L+ V++
Sbjct: 86  GHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSY 145

Query: 314 TALISGFCRGGKVVEAERMLREMLKVG--------LKPDDATYTMVIDCFCKNGDTKTGF 365
             LI+G C  G+V EA  +LR + K          +K +   Y++VIDC C+NG    GF
Sbjct: 146 GILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGF 205

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
               EM  +G  P   TY +L+ GLC  G+      L+D M+  G+      + +L++G 
Sbjct: 206 EFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGL 265

Query: 426 CKHG 429
           CK+G
Sbjct: 266 CKNG 269


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 212/413 (51%), Gaps = 20/413 (4%)

Query: 55   THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTL 114
            T + G VL  +      LGF D A        +  +      C CL+  ++R   P   L
Sbjct: 811  TTVVGKVLQGVRNGDAALGFFDWATS------QEGYNHDTYTCNCLLQALLRLKRPKDAL 864

Query: 115  GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
              Y   L    SP+++ F +L+H LC+ G I  A  +  E  + G+    +  N +I G 
Sbjct: 865  QVYRNKL--CCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGL 922

Query: 175  CKAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C A+ LD    L   ME SG   PDV+TYS +++ L K  ++DDA  L+ +M  +G +PN
Sbjct: 923  CSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPN 982

Query: 234  DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
             V +++L+ G CK G++D      EA  ++  M  +G +P+ +TY  ++DG CK G ++ 
Sbjct: 983  VVTYSSLLHGLCKAGKLD------EATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDE 1036

Query: 294  ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
            A  + +EM+  G + + V +T L+  FC+ GK  +A  ++  M++ G  P+  TY  ++D
Sbjct: 1037 AYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD 1096

Query: 354  CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             FCK  + +   +LL  M   G +P V +YN ++ GLCK  ++    +LL+ ML    VP
Sbjct: 1097 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVP 1156

Query: 414  DDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            D +T+N +++  CK        E F+ +Q E G   +   Y SLV    K R+
Sbjct: 1157 DIVTFNTIIDAMCKTYRVDIAYELFNLIQ-ESGCTPNLVTYNSLVHGLCKSRR 1208



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/478 (30%), Positives = 238/478 (49%), Gaps = 44/478 (9%)

Query: 7    LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------------- 51
            +  YST+V  LV       A  L+  +VSK G   +   ++S+L                
Sbjct: 948  VFTYSTIVDSLVKSGKVDDACRLVEDMVSK-GCSPNVVTYSSLLHGLCKAGKLDEATALL 1006

Query: 52   ---TRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CL 100
               TR    P +V  + ++  +  LG +D+A   + LL +    +   GC+        L
Sbjct: 1007 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEA---YHLLEE----MVDGGCQPNVVTYTVL 1059

Query: 101  IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
            +D   +       +G    +++ GY P+++ +N L+   CK+ +++ A  +     ++G 
Sbjct: 1060 LDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGC 1119

Query: 161  HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
                VS+NT+I G CKA  + EG  L   M  +   PD+ T++ +I+ +CK  R+D A  
Sbjct: 1120 VPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYE 1179

Query: 221  LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYT 279
            L + + E G TPN V + +L+ G CK+ R D      +A  ++ EM    G +PD ITY 
Sbjct: 1180 LFNLIQESGCTPNLVTYNSLVHGLCKSRRFD------QAEYLLREMTRKQGCSPDIITYN 1233

Query: 280  ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
             ++DG CK   ++ A  +  +M+  G+  D+V ++ +IS  C+   + EA  +L  MLK 
Sbjct: 1234 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 1293

Query: 340  GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            G  P   TY  +ID FCK G+      +L+ + S G  P V T++  ++ L K G+L+ A
Sbjct: 1294 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQA 1353

Query: 400  NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
              LL+TML  G+VPD +TYN LL+G C     E   D  ++  + G   D A YT+LV
Sbjct: 1354 GELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 180/360 (50%), Gaps = 42/360 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G++P+V+ +N ++H  CK  ++++A  + ++   RG     VS+ T+ING CK  
Sbjct: 255 EMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLD 314

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  R+   M   G +P+V TY  L++G C+   LD A  L+ +M ERG  PN + + 
Sbjct: 315 QVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYN 374

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            ++   C+        DM+ A +++  M   G  PD I Y+ ++ GFCK G L  A D+ 
Sbjct: 375 NIMHVFCRRN------DMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLL 428

Query: 299 KEMIKRGI------------------------EL-----------DNVAFTALISGFCRG 323
           ++MI+RG                         EL           D VA++ LI   C+ 
Sbjct: 429 EQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKA 488

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            ++ EAE  L  M+K    PD  TY  V+D  CK+      F L   MR+ G +P V TY
Sbjct: 489 KRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTY 548

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQSEKG 442
           + +++  CK   L +A  +L+ M +   VPD +TY+ L+ G CK G  +  FD  Q   G
Sbjct: 549 SIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLG 608



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 180/332 (54%), Gaps = 11/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +N +++ L K  ++ DA  + +E    G      S+NT+++G CKA  ++    L
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PDV +Y+ +INGLCK +++D+A  ++ +M +RG  PN + + TL+DG C+
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 347

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GD+  A ++V +M   G  P+ ITY  ++  FC+  D+E A  + + MI+ G 
Sbjct: 348 ------VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGC 401

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D + ++ +ISGFC+ GK+ EA  +L +M++ G +PD A  + +ID  CK     +   
Sbjct: 402 PPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQE 461

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL+        P V  Y+ L++ LCK  +L  A   LD M+     PD +TYN +++G C
Sbjct: 462 LLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLC 521

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           K     D    FD++++  G++ D   Y+ ++
Sbjct: 522 KSRRINDAFLLFDRMRA-AGVMPDVVTYSIVI 552



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 182/328 (55%), Gaps = 10/328 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V   ++  LC  G+  DA + F E  K      +V++NT+ING  K+  LD+  RL   M
Sbjct: 198 VHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEM 256

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
             +G  P+V++Y+ +++G CK NR+++A  LL +M  RG  P+ V +TT+I+G CK  ++
Sbjct: 257 VDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQV 316

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D      EA +++D+M   G  P+ ITY  L+DGFC+ GDL+ A+++ ++M +RG   + 
Sbjct: 317 D------EACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNA 370

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           + +  ++  FCR   +  A ++L+ M++ G  PD   Y+ +I  FCK G  +    LL++
Sbjct: 371 ITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQ 430

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P V   + L++ LCK   + +A  LL   + +   PD + Y+IL+   CK   
Sbjct: 431 MIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCK--- 487

Query: 431 PEDFDKLQSEKGLVSDYACYTSLVSKSS 458
            +   + +S   ++    CY  +V+ +S
Sbjct: 488 AKRLPEAESWLDVMVKNRCYPDVVTYNS 515



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 190/388 (48%), Gaps = 6/388 (1%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           RG     +    L+  +  +G LD A++  R + +  +R  A     ++    R N    
Sbjct: 329 RGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMER 388

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
                  ++  G  P    ++ ++   CK GK+++A  + ++  +RG        +TLI+
Sbjct: 389 AHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLID 448

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             CKA  +D    L  +  G    PDV  YS LI+ LCK  RL +AE  L  M +    P
Sbjct: 449 ALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYP 508

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + +++DG CK+ RI+      +A  + D M   G+ PD +TY+I++  FCK+ +L+
Sbjct: 509 DVVTYNSVVDGLCKSRRIN------DAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLD 562

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           SA  + + M +     D V ++ALI+G C+ G V +A  + +EML  G  P+  TY  +I
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D  CK    +    +L+ MR     P   TY  L+NGLC   +L+ A  +L  M D G +
Sbjct: 623 DGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCL 682

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE 440
           PD +TY  LL    K  N E  ++L  E
Sbjct: 683 PDRMTYGTLLRALQKTNNLELVEQLLKE 710



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 184/350 (52%), Gaps = 13/350 (3%)

Query: 110 PTVTLGF--YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           P   L F  + E  D GY   ++  N L++ L K  +   A  +F    +       V++
Sbjct: 106 PGAALVFFEWAETRD-GYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTY 164

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           +TLI+G  +A  +   + L   M   G++     + +++ GLC   +  DA L   EM  
Sbjct: 165 STLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-S 223

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           +   P+ V + T+I+G  K+ R+D      +A ++++EM  NG  P+  +Y  +L GFCK
Sbjct: 224 KTCPPDSVTYNTMINGLSKSDRLD------DAIRLLEEMVDNGFAPNVFSYNTVLHGFCK 277

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
              +E+AL + ++M+ RG   D V++T +I+G C+  +V EA R++ +M++ G +P+  T
Sbjct: 278 ANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVIT 337

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  ++D FC+ GD      L+++M   G+ P   TYN +M+  C+   ++ A+ +L  M+
Sbjct: 338 YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMI 397

Query: 408 DLGVVPDDITYNILLEGHCKHGN-PEDFDKLQS--EKGLVSDYACYTSLV 454
             G  PD I Y+ ++ G CK G   E  D L+    +G   D AC ++L+
Sbjct: 398 QTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLI 447



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 159/309 (51%), Gaps = 30/309 (9%)

Query: 120  ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
            ++  G  P+V  +N ++  LCK  K+ +  ++ ++          V+FNT+I+  CK   
Sbjct: 1114 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYR 1173

Query: 180  LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIFT 238
            +D  + L ++++ SG  P++ TY++L++GLCK  R D AE LL EM  ++G +P+ + + 
Sbjct: 1174 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 1233

Query: 239  TLIDGHCKNGRID-------------MAGD----------------MKEARKIVDEMCTN 269
            T+IDG CK+ R+D             +A D                M EA  +++ M  N
Sbjct: 1234 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 1293

Query: 270  GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            G +P  ITY  L+DGFCK G+L+ AL+I + ++ +G   D V F+  I    + G++ +A
Sbjct: 1294 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQA 1353

Query: 330  ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
              +L  ML+ GL PD  TY  ++  FC    T+    L + MR  G  P   TY  L+  
Sbjct: 1354 GELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGH 1413

Query: 390  LCKHGQLKN 398
            L      K+
Sbjct: 1414 LVDKKSYKD 1422



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 139/248 (56%), Gaps = 6/248 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P V  +++L+H LCK  ++ +A+   D   K   +   V++N++++G CK++ +++ F 
Sbjct: 472 APDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFL 531

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M  +G+ PDV TYS +I+  CK+N LD A  +L  M E    P+ V ++ LI+G C
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLC 591

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G +D A D      +  EM   G  P+ +TY  L+DG CK   +E A ++ + M K+ 
Sbjct: 592 KAGTVDKAFD------VFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQS 645

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D++ +T LI+G C   ++ EA R+LREM   G  PD  TY  ++    K  + +   
Sbjct: 646 CTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVE 705

Query: 366 RLLKEMRS 373
           +LLKEM +
Sbjct: 706 QLLKEMEA 713



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 6/288 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G  P V   + L+  LCK   I  AQ +             V+++ LI+  CKAK
Sbjct: 430 QMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAK 489

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E      VM  +   PDV TY+++++GLCK  R++DA LL   M   G+ P+ V ++
Sbjct: 490 RLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYS 549

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I   CK+  +D A  M E  K  +  C     PD +TY+ L++G CK G ++ A D+ 
Sbjct: 550 IVIHSFCKDNNLDSAFKMLERMK--EAKCV----PDVVTYSALINGLCKAGTVDKAFDVF 603

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM+  G   + V +  LI G C+  KV +A  ML  M K    PD  TYT +I+  C  
Sbjct: 604 QEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNA 663

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
              +  +R+L+EM+  G LP   TY  L+  L K   L+    LL  M
Sbjct: 664 SRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 186/413 (45%), Gaps = 62/413 (15%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG-KR 158
            +ID M +T    +    +  I + G +P++  +N L+H LCK  +   A+ +  E   K+
Sbjct: 1164 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 1223

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            G     +++NT+I+G CK+K +D  ++L   M   G+ PD  TYS +I+ LCK   +D+A
Sbjct: 1224 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
              +L  M + G  P  + + TLIDG CK G +D      +A +I+  + + G  PD +T+
Sbjct: 1284 NNVLELMLKNGFDPGAITYGTLIDGFCKTGNLD------KALEILQLLLSKGSYPDVVTF 1337

Query: 279  TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            +I +D   K G L  A ++ + M++ G+  D V +  L+ GFC      +A  +   M +
Sbjct: 1338 SIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQ 1397

Query: 339  VGLKPDDATYTMVIDCFCKNGDTK------------TGFRLLKEMRS----------DGH 376
             G +PD+ATYT ++         K            TGF+L  E+ S          D  
Sbjct: 1398 CGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVR 1457

Query: 377  LPA--------------------------VETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            L                            V  ++A++     H Q + A  L   M   G
Sbjct: 1458 LGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEG 1517

Query: 411  VVPDDITYNILLEGHCKHG----NPEDFDKLQSEKGL---VSDYACYTSLVSK 456
            V PD +T+  LL   C  G      ++F  +  + GL   V  ++C   L+ +
Sbjct: 1518 VEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGR 1570



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 166/410 (40%), Gaps = 61/410 (14%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            +ID + ++         +L++L  G +P    +++++  LCK   + +A  V +   K G
Sbjct: 1235 VIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNG 1294

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                A+++ TLI+G CK  NLD+   +  ++   G  PDV T+S  I+ L K  RL  A 
Sbjct: 1295 FDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAG 1354

Query: 220  LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             LL  M   GL P+ V + TL+ G C     + A D+ E       M   G  PD  TYT
Sbjct: 1355 ELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEV------MRQCGCEPDNATYT 1408

Query: 280  ILLDGFCKEGDLESAL-DIRKEMIKRGIELDN---------------------------- 310
             L+     +   +  L ++ K M+  G +L++                            
Sbjct: 1409 TLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGK 1468

Query: 311  -------------------VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
                               V ++A++  +    +  +A  + R M   G++PD  T+  +
Sbjct: 1469 CGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSL 1528

Query: 352  IDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            +   C  G           +  D G  P V+ ++ +++ L   G+L   N   D ML + 
Sbjct: 1529 LTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLL---GRLGLVNEAEDLMLGMP 1585

Query: 411  VVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKY 460
              P   T+N LL  +   G   DF++      L    A Y  L +  ++Y
Sbjct: 1586 CKPSAATWNCLLSAYKICG---DFERALRVAELNPTQASYLLLSNMYAQY 1632



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  ++ L++ LCK G +  A  VF E    G     V++NTLI+G CK   +++   +
Sbjct: 578 PDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEM 637

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M      PD  TY+ LINGLC  +RL++A  +L EM ++G  P+ + + TL+    K
Sbjct: 638 LEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQK 697

Query: 247 NGRIDMAGDMKEARKIVDE 265
              +++   + +  +  +E
Sbjct: 698 TNNLELVEQLLKEMEATEE 716



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 18/235 (7%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKK-------------GMGSSASLFASILETRGT 55
           AYS ++H L   K   +A   L ++V  +             G+  S  +  + L     
Sbjct: 477 AYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRM 536

Query: 56  HLPGLVLDALMIVYVDLGF-----LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G++ D +    V   F     LD A +    +++            LI+ + +    
Sbjct: 537 RAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTV 596

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
                 + E+L  G +P++  +N L+  LCK  K++ A  + +   K+     ++++  L
Sbjct: 597 DKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCL 656

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ING C A  L+E +R+   M+  G  PD  TY  L+  L K N L+  E LL EM
Sbjct: 657 INGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 182/342 (53%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++++ G  P++  +N L+  LC+ G + +A  + DE  +RGL     S++TL+ G C
Sbjct: 218 LFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLC 277

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D   ++          PDV  YS LI GLCK  RLD+A  L  +M E    P+ V
Sbjct: 278 KTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVV 337

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            FT L+DG CK  R      ++EA+++++ M      P+ ITY+ L+DG CK G +  A 
Sbjct: 338 TFTALMDGLCKGDR------LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 391

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ K MI RGIE + V + +LI GFC    V  A  ++ EM   G  PD  TY  +ID  
Sbjct: 392 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 451

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G      RL  +M++    P V TY+ L+ G CK  ++  A  L D ML   V+PD 
Sbjct: 452 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDV 511

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +T++ L+EG+C  G  +D ++L  E        D   YTSLV
Sbjct: 512 VTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLV 553



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 191/339 (56%), Gaps = 8/339 (2%)

Query: 100 LIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           +ID + + N LP  T  ++ ++   G  P+ + +NVL++  CK  K+  A ++  E  + 
Sbjct: 132 MIDGLCKANRLPEATT-YFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES 190

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL    V+++T+I+G C+   +D  ++L   M  +G  P++ TY+ L++GLC+   +D+A
Sbjct: 191 GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 250

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL EM ERGL P+   + TL+ G CK G+IDM      A K+ ++       PD + Y
Sbjct: 251 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDM------ALKVFEDNSNGDCPPDVVAY 304

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           + L+ G CK G L+ A  + ++M +   E D V FTAL+ G C+G ++ EA+++L  M  
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 364

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
               P+  TY+ +ID  CK G  +    + K M   G  P V TYN+L++G C    + +
Sbjct: 365 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 424

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           A +L++ M   G +PD ITYN L++G CK G   + ++L
Sbjct: 425 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 463



 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 171/312 (54%), Gaps = 6/312 (1%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P V  F  LM  LCK  ++++AQ V +    R      +++++LI+G CK   + +   
Sbjct: 333 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 392

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ P+V TY++LI+G C  N +D A LL+ EM   G  P+ + + TLIDG C
Sbjct: 393 VFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLC 452

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GR        EA ++  +M     NPD ITY+ L+ GFCK   ++ A  +  +M+K+ 
Sbjct: 453 KTGR------APEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 506

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D V F+ L+ G+C  G V +AER+L EM+     PD  TYT ++D FCK G      
Sbjct: 507 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 566

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           R+LK M   G  P V TY AL++  C+ G+   A  LL+ M+  GV P+ ITY  L+ G 
Sbjct: 567 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGF 626

Query: 426 CKHGNPEDFDKL 437
           C  G+ E+  K+
Sbjct: 627 CGTGDLEEARKI 638



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 176/329 (53%), Gaps = 7/329 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +T         +  ++  G  P+V  +N L+H  C    +  A ++ +E    G
Sbjct: 377 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 436

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +++NTLI+G CK     E  RL   M+     PDV TYS LI G CK  R+D A 
Sbjct: 437 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMAR 496

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M ++ + P+ V F+TL++G+C  G +D      +A ++++EM  +  +PD  TYT
Sbjct: 497 TLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD------DAERLLEEMVASDCSPDVYTYT 550

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DGFCK G +  A  + K M KRG + + V +TALI  FCR GK   A R+L EM+  
Sbjct: 551 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN 610

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKN 398
           G++P+  TY  +I  FC  GD +   ++L+ +  D +  A +  Y  +M+GLC+ G++  
Sbjct: 611 GVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSA 670

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           A  LL+ +   G  P    Y  L+ G C+
Sbjct: 671 ALELLEAIKQSGTPPRHDIYVALIRGLCQ 699



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 180/339 (53%), Gaps = 12/339 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P   ++N ++H LCK    ++     D F         +++  +I+G CKA 
Sbjct: 84  EMRESGPVPDAAIYNFVIHALCK---ARNTAKALDYFRSMECEKNVITWTIMIDGLCKAN 140

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E     + M+  G  P+ +TY+ LING CK +++  A LLL EM E GL PN V ++
Sbjct: 141 RLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYS 200

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I G C+  ++D A       K+  +M  NG  P+ +TY  LL G C+ G ++ A ++ 
Sbjct: 201 TVIHGFCRQTKVDTA------YKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELL 254

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM +RG++ D  ++  L++G C+ GK+  A ++  +       PD   Y+ +I   CK 
Sbjct: 255 DEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKA 314

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      +L ++MR +   P V T+ ALM+GLCK  +L+ A  +L+TM D    P+ ITY
Sbjct: 315 GRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITY 374

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + L++G CK G   D  ++      +G+  +   Y SL+
Sbjct: 375 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLI 413



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 199/434 (45%), Gaps = 66/434 (15%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G LD+A + F  +R++           L+D + + +           + D   +P+V  +
Sbjct: 315 GRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITY 374

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L+  LCK G+++DAQ VF     RG+    V++N+LI+G C    +D    L   M  
Sbjct: 375 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 434

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G  PD+ TY+ LI+GLCK  R  +A  L  +M  +   P+ + ++ LI G CK  RIDM
Sbjct: 435 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 494

Query: 253 A-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           A                             G + +A ++++EM  +  +PD  TYT L+D
Sbjct: 495 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFCK G +  A  + K M KRG + + V +TALI  FCR GK   A R+L EM+  G++P
Sbjct: 555 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQP 614

Query: 344 DDATYTMVIDCFCKNGD-------------------------------TKTG-----FRL 367
           +  TY  +I  FC  GD                                +TG       L
Sbjct: 615 NVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALEL 674

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM-LDLGVVPDDITYNILLEGHC 426
           L+ ++  G  P  + Y AL+ GLC+  +L  A  +L+ M L     P+   Y  +++   
Sbjct: 675 LEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELA 734

Query: 427 KHGNPEDFDKLQSE 440
           + G  E+ + L  E
Sbjct: 735 REGRHEEANALADE 748



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 149/285 (52%), Gaps = 11/285 (3%)

Query: 147 DAQMVFDEFG--KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           DA + F  +   ++G      ++N L     +A+ +DE   +       G+ P+V+TY+ 
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           +I GLCK   LD A  LL EM E G  P+  I+  +I   CK          +   K +D
Sbjct: 65  VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCK---------ARNTAKALD 115

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
              +     + IT+TI++DG CK   L  A     +M K+G   +   +  LI+GFC+  
Sbjct: 116 YFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVH 175

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           KV  A  +L+EM + GL P+  TY+ VI  FC+     T ++L ++M  +G +P + TYN
Sbjct: 176 KVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 235

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            L++GLC++G +  A  LLD M + G+ PD  +Y+ L+ G CK G
Sbjct: 236 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 280



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 16/279 (5%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLI    +     +    + ++L     P V  F+ L+   C  G + DA+ + +E    
Sbjct: 481 CLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVAS 540

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                  ++ +L++G CK   + E  R+   M   G +P+V TY+ALI+  C+  +   A
Sbjct: 541 DCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVA 600

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV-----DEMCTNGLNP 273
             LL EM   G+ PN + + +LI G C        GD++EARKI+     DE C      
Sbjct: 601 YRLLEEMVGNGVQPNVITYRSLIGGFCGT------GDLEEARKILERLERDENC----KA 650

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D   Y +++DG C+ G + +AL++ + + + G    +  + ALI G C+G ++ +A  +L
Sbjct: 651 DMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVL 710

Query: 334 REM-LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            EM L    +P+   Y  VI    + G  +    L  E+
Sbjct: 711 EEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 749



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++G + +   +  L     R  ++ E   +L+     G+ P+  TY +VI   CK+GD  
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               LL+EMR  G +P    YN +++ LCK    +N    LD    +    + IT+ I++
Sbjct: 77  KACELLEEMRESGPVPDAAIYNFVIHALCKA---RNTAKALDYFRSMECEKNVITWTIMI 133

Query: 423 EGHCKHGN-PED---FDKLQSEKGLVSDYACYTSLVS 455
           +G CK    PE    F K++ +KG V +   Y  L++
Sbjct: 134 DGLCKANRLPEATTYFAKMK-KKGTVPNEWTYNVLIN 169


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 182/342 (53%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++++ G  P++  +N L+  LC+ G + +A  + DE  +RGL     S++TL+ G C
Sbjct: 99  LFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLC 158

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D   ++          PDV  YS LI GLCK  RLD+A  L  +M E    P+ V
Sbjct: 159 KTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVV 218

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            FT L+DG CK  R      ++EA+++++ M      P+ ITY+ L+DG CK G +  A 
Sbjct: 219 TFTALMDGLCKGDR------LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 272

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ K MI RGIE + V + +LI GFC    V  A  ++ EM   G  PD  TY  +ID  
Sbjct: 273 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 332

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G      RL  +M++    P V TY+ L+ G CK  ++  A  L D ML   V+PD 
Sbjct: 333 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDV 392

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +T++ L+EG+C  G  +D ++L  E        D   YTSLV
Sbjct: 393 VTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLV 434



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 191/339 (56%), Gaps = 8/339 (2%)

Query: 100 LIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           +ID + + N LP  T  ++ ++   G  P+ + +NVL++  CK  K+  A ++  E  + 
Sbjct: 13  MIDGLCKANRLPEATT-YFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES 71

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL    V+++T+I+G C+   +D  ++L   M  +G  P++ TY+ L++GLC+   +D+A
Sbjct: 72  GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 131

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL EM ERGL P+   + TL+ G CK G+IDM      A K+ ++       PD + Y
Sbjct: 132 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDM------ALKVFEDNSNGDCPPDVVAY 185

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           + L+ G CK G L+ A  + ++M +   E D V FTAL+ G C+G ++ EA+++L  M  
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
               P+  TY+ +ID  CK G  +    + K M   G  P V TYN+L++G C    + +
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           A +L++ M   G +PD ITYN L++G CK G   + ++L
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 344



 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 171/312 (54%), Gaps = 6/312 (1%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P V  F  LM  LCK  ++++AQ V +    R      +++++LI+G CK   + +   
Sbjct: 214 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 273

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ P+V TY++LI+G C  N +D A LL+ EM   G  P+ + + TLIDG C
Sbjct: 274 VFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLC 333

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GR        EA ++  +M     NPD ITY+ L+ GFCK   ++ A  +  +M+K+ 
Sbjct: 334 KTGRA------PEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 387

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D V F+ L+ G+C  G V +AER+L EM+     PD  TYT ++D FCK G      
Sbjct: 388 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 447

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           R+LK M   G  P V TY AL++  C+ G+   A  LL+ M+  GV P+ ITY  L+ G 
Sbjct: 448 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGF 507

Query: 426 CKHGNPEDFDKL 437
           C  G+ E+  K+
Sbjct: 508 CGTGDLEEARKM 519



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 181/330 (54%), Gaps = 9/330 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  + +++  LCK  ++ +A   F +  K+G      ++N LING CK   +   + L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+ SG+ P+V TYS +I+G C++ ++D A  L  +M E G  PN V + TL+ G C+N
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G +D      EA +++DEM   GL PDK +Y  L+ G CK G ++ AL + ++       
Sbjct: 126 GLMD------EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCP 179

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D VA++ LI+G C+ G++ EA ++  +M +   +PD  T+T ++D  CK    +   ++
Sbjct: 180 PDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 239

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L+ M      P V TY++L++GLCK GQ+++A  +   M+  G+ P+ +TYN L+ G C 
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 299

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLV 454
               +    L  E    G + D   Y +L+
Sbjct: 300 TNGVDSALLLMEEMTATGCLPDIITYNTLI 329



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 199/434 (45%), Gaps = 66/434 (15%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G LD+A + F  +R++           L+D + + +           + D   +P+V  +
Sbjct: 196 GRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITY 255

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L+  LCK G+++DAQ VF     RG+    V++N+LI+G C    +D    L   M  
Sbjct: 256 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 315

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G  PD+ TY+ LI+GLCK  R  +A  L  +M  +   P+ + ++ LI G CK  RIDM
Sbjct: 316 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 375

Query: 253 A-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           A                             G + +A ++++EM  +  +PD  TYT L+D
Sbjct: 376 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFCK G +  A  + K M KRG + + V +TALI  FCR GK   A ++L EM+  G++P
Sbjct: 436 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQP 495

Query: 344 DDATYTMVIDCFCKNGD-------------------------------TKTG-----FRL 367
           +  TY  +I  FC  GD                                +TG       L
Sbjct: 496 NVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALEL 555

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM-LDLGVVPDDITYNILLEGHC 426
           L+ ++  G  P  + Y AL+ GLC+  +L  A  +L+ M L     P+   Y  +++   
Sbjct: 556 LEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELA 615

Query: 427 KHGNPEDFDKLQSE 440
           + G  E+ + L  E
Sbjct: 616 REGRHEEANALADE 629



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 139/281 (49%), Gaps = 39/281 (13%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P V  ++ L+   CK  +I  A+ +FD+  K+ +    V+F+TL+ G+C A  +D+  R
Sbjct: 354 NPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAER 413

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M  S   PDVYTY++L++G CK  R+ +A  +L  M +RG  PN V +T LID  C
Sbjct: 414 LLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC 473

Query: 246 KNGRIDMA-----------------------------GDMKEARKIV-----DEMCTNGL 271
           + G+  +A                             GD++EARK++     DE C    
Sbjct: 474 RAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENC---- 529

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             D   Y +++DG C+ G + +AL++ + + + G    +  + ALI G C+G ++ +A  
Sbjct: 530 KADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAME 589

Query: 332 MLREM-LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           +L EM L    +P+   Y  VI    + G  +    L  E+
Sbjct: 590 VLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 630



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 3/152 (1%)

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E + + +T +I G C+  ++ EA     +M K G  P++ TY ++I+ FCK       + 
Sbjct: 4   EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 63

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LLKEM+  G  P V TY+ +++G C+  ++  A  L   M++ G +P+ +TYN LL G C
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           ++G  ++  +L     E+GL  D   Y +L++
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMA 155


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 193/347 (55%), Gaps = 10/347 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L     P V  FN ++H LC++G + ++  +  +  KRG+ A   + N  I G C+  
Sbjct: 201 EMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDG 260

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L+E   L   M G+ + PDV TY+ L+ GLCK++++ +A   L  M  +G  P+D  + 
Sbjct: 261 RLEEAVALVERM-GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYN 319

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+IDG+CK+G       ++EA +++ +    G  PD++TY  L++G C EGD+E AL++ 
Sbjct: 320 TIIDGYCKSGM------LQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELF 373

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E   + ++ D V + +L+ G CR G ++ A +++ EM++ G  PD  TY ++I+  CK 
Sbjct: 374 NEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKM 433

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+      ++ +    G+LP V T+N L++G CK  +L +A  L++ M   G+ PD ITY
Sbjct: 434 GNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITY 493

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           N +L G CK G  ++ ++   E   KG   +   Y  L+    K  Q
Sbjct: 494 NSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQ 540



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 173/337 (51%), Gaps = 11/337 (3%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P V  +N LM  LCK+ K+++A         +G      ++NT+I+G+CK+  L E   
Sbjct: 277 APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATE 336

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L       G  PD  TY +LINGLC E  ++ A  L +E   + L P+ V++ +L+ G C
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLC 396

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G I        A ++++EM   G +PD  TY I+++G CK G++  A  +  + I +G
Sbjct: 397 RQGLI------LHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKG 450

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D   F  LI G+C+  K+  A +++  M   G+ PD  TY  V++  CK G  K   
Sbjct: 451 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVN 510

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
              +EM   G  P   TYN L+   CK  QL+ A+ ++  M   G+VPD +++N L+ G 
Sbjct: 511 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF 570

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSS 458
           C++G+ +     F KL  EKG  +    +  L+   S
Sbjct: 571 CRNGDLDGAYLLFQKLD-EKGYSATADTFNILIGAYS 606



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 170/315 (53%), Gaps = 6/315 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + R  L    L    E+++ G  P ++ +N++++ LCK G I DA +V ++   +G
Sbjct: 391 LVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKG 450

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 +FNTLI+G+CK   LD   +L   M   G+ PDV TY++++NGLCK  +  +  
Sbjct: 451 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVN 510

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
               EM  +G  PN + +  LI+  CK  +++      EA  ++  MC +GL PD +++ 
Sbjct: 511 ETFEEMILKGCRPNAITYNILIENFCKINQLE------EASGVIVRMCQDGLVPDAVSFN 564

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC+ GDL+ A  + +++ ++G       F  LI  +     +  AE++  EM+  
Sbjct: 565 TLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISK 624

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G KPD  TY +++D  CK  +    +  L EM S G +P++ T+  ++N L  + ++  A
Sbjct: 625 GYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEA 684

Query: 400 NMLLDTMLDLGVVPD 414
             ++  M+ +GVVP+
Sbjct: 685 VAIIHIMVRMGVVPE 699



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P    +  L++ LC EG I+ A  +F+E   + L    V +N+L+ G C+   +   
Sbjct: 345 GFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 404

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ + M   G  PD++TY+ +INGLCK   + DA +++++   +G  P+   F TLIDG
Sbjct: 405 LQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDG 464

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D       A ++V+ M T G+ PD ITY  +L+G CK G  +   +  +EMI 
Sbjct: 465 YCKRLKLD------SALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMIL 518

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI  FC+  ++ EA  ++  M + GL PD  ++  +I  FC+NGD   
Sbjct: 519 KGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDG 578

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            + L +++   G+    +T+N L+        ++ A  +   M+  G  PD  TY IL++
Sbjct: 579 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVD 638

Query: 424 GHCKHGN 430
           G CK  N
Sbjct: 639 GLCKAAN 645



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 148/323 (45%), Gaps = 12/323 (3%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           +    + G+++ A   F+          A ++N +++    A   D+  ++   M  +G+
Sbjct: 78  IQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGV 137

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PD  T++  +   C   R   A  LL  + ERG       + T++ G   +G       
Sbjct: 138 APDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGH------ 191

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
              AR + DEM    + PD  T+  +L   C++GD+  +  +  +++KRG+  +      
Sbjct: 192 GYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNI 251

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
            I G C  G++ EA  ++ E +   + PD  TY  ++   CK+   +   + L  M + G
Sbjct: 252 WIRGLCEDGRLEEAVALV-ERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQG 310

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
            +P   TYN +++G CK G L+ A  LL   +  G VPD +TY  L+ G C  G+ E   
Sbjct: 311 CIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERAL 370

Query: 434 --FDKLQSEKGLVSDYACYTSLV 454
             F++ Q+ K L  D   Y SLV
Sbjct: 371 ELFNEAQA-KDLKPDLVVYNSLV 392



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 108/271 (39%), Gaps = 14/271 (5%)

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV--IFTTLIDGHCKNGRIDMAGDM 256
           +  Y ALI  L    RLDD +  L       L P+ +  ++   I  + + GR+  A D 
Sbjct: 35  IPAYRALIRELVSAGRLDDVDAALAS-ARSHLAPDSLQPLYVASIQAYARAGRLRAAVDA 93

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            E       M      P    Y  ++D        + A  +   M+  G+  D    T  
Sbjct: 94  FE------RMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVR 147

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +  FC  G+   A R+LR + + G     A Y  V+     +G       L  EM     
Sbjct: 148 LKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDV 207

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P V T+N +++ LC+ G +  +  LL  +L  G+  +  T NI + G C+ G  E+   
Sbjct: 208 FPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVA 267

Query: 437 LQSEKG--LVSDYACYTSLVS---KSSKYRQ 462
           L    G  +  D   Y +L+    K SK ++
Sbjct: 268 LVERMGAYVAPDVVTYNTLMRGLCKDSKVQE 298



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 44/189 (23%)

Query: 95  RGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           +GCR        LI+   + N      G  + +   G  P    FN L+H  C+ G +  
Sbjct: 519 KGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDG 578

Query: 148 AQMVFDEFGKRGLHATAVSFNTLI-----------------------------------N 172
           A ++F +  ++G  ATA +FN LI                                   +
Sbjct: 579 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVD 638

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CKA N+D  +   + M   G  P + T+  ++N L   +R+ +A  ++H M   G+ P
Sbjct: 639 GLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698

Query: 233 N--DVIFTT 239
              D I +T
Sbjct: 699 EVVDTILST 707



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 5/146 (3%)

Query: 59  GLVLDALMIVYVDLGF-----LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           GLV DA+    +  GF     LD A   F+ L +  +   A     LI          + 
Sbjct: 555 GLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMA 614

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
              + E++  GY P +Y + +L+  LCK   +  A     E   +G   +  +F  ++N 
Sbjct: 615 EKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNL 674

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDV 199
                 + E   +  +M   G+ P+V
Sbjct: 675 LAMNHRVSEAVAIIHIMVRMGVVPEV 700


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 243/497 (48%), Gaps = 37/497 (7%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPG 59
           +FR  + +Y  +VH L   +M+ + R  L+ +V         ++    L    R      
Sbjct: 63  NFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSP 122

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYL 118
            V D ++ VYV+ G   +A+  F  + K   RIP+ R C  L++ +++          Y 
Sbjct: 123 TVFDMILKVYVEKGLTKNALYVFDNMGKCG-RIPSLRSCNSLLNNLVKNGETHTAHYVYQ 181

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G  P V++ +++++  CK+GK+ +A     +    G+    V++++LING+    
Sbjct: 182 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 241

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIF 237
           +++    +   M   G+  +V TY+ LI G CK+ ++D+AE +L  M E   L P++  +
Sbjct: 242 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAY 301

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
             LIDG+C+ G+ID A                             G++ EA  ++  M  
Sbjct: 302 GVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 361

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             L PD  +Y  LLDG+C+EG    A ++  +M++ GIE   + +  L+ G CR G   +
Sbjct: 362 WNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDD 421

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A ++   M+K G+ PD+  Y+ ++D   K  + +    L K++ + G   +  T+N +++
Sbjct: 422 ALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMIS 481

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVS 445
           GLCK G++  A  + D M DLG  PD ITY  L++G+CK  N     K++     + +  
Sbjct: 482 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISP 541

Query: 446 DYACYTSLVSKSSKYRQ 462
               Y SL+S   K R+
Sbjct: 542 SIEMYNSLISGLFKSRR 558



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 213/449 (47%), Gaps = 41/449 (9%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           ++G  S A      +   G     L  + L+     +G  DDA+Q + L+ K        
Sbjct: 380 REGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEV 439

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           G   L+D + +          + +IL  G++ S   FN ++  LCK GK+ +A+ +FD+ 
Sbjct: 440 GYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 499

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G     +++ TLI+G+CKA N+ + F++K  ME   + P +  Y++LI+GL K  RL
Sbjct: 500 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRL 559

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +   LL EM  RGLTPN V +  LIDG CK G +D      +A     EM  NGL+ + 
Sbjct: 560 VEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD------KAFSSYFEMTENGLSANI 613

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELD-------------------------- 309
           I  + ++ G  + G ++ A  + ++M+  G   D                          
Sbjct: 614 IICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCK 673

Query: 310 ------NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                 N+ +   I+G C+ GKV +A R    +   G  PD+ TY  +I  +   G+   
Sbjct: 674 TFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDE 733

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            FRL  EM   G +P + TYNAL+NGLCK   +  A  L   +   G+ P+ +TYN L++
Sbjct: 734 AFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID 793

Query: 424 GHCKHGNPEDFDKLQS---EKGLVSDYAC 449
           G+CK GN +   KL+    E+G+     C
Sbjct: 794 GYCKIGNMDAAFKLKDKMIEEGISPSIQC 822



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    + VL+   C+ GKI DA  + DE  + GL       N+LING+CK   + E   +
Sbjct: 296 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 355

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    ++PD Y+Y+ L++G C+E    +A  L  +M + G+ P  + + TL+ G C+
Sbjct: 356 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 415

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G  D      +A +I   M   G+ PD++ Y+ LLDG  K  + E A  + K+++ RG 
Sbjct: 416 VGAFD------DALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 469

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               + F  +ISG C+ GK+VEAE +  +M  +G  PD  TY  +ID +CK  +    F+
Sbjct: 470 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK 529

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M  +   P++E YN+L++GL K  +L     LL  M   G+ P+ +TY  L++G C
Sbjct: 530 VKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWC 589

Query: 427 KHG 429
           K G
Sbjct: 590 KEG 592



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 23/276 (8%)

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE------RGLTPNDVI 236
           GF  + V +    RP+V +Y  L++ L +    D+    L+++ +      RG    +VI
Sbjct: 53  GF-FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRG----NVI 107

Query: 237 FTTLIDGHCKNGRIDMAGDM-----------KEARKIVDEMCTNGLNPDKITYTILLDGF 285
           +  L+  + +        DM           K A  + D M   G  P   +   LL+  
Sbjct: 108 WDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNL 167

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            K G+  +A  + ++MI+ GI  D    + +++ FC+ GKV EA   +++M  +G++P+ 
Sbjct: 168 VKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNI 227

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +I+ +   GD +    +LK M   G    V TY  L+ G CK  ++  A  +L  
Sbjct: 228 VTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRG 287

Query: 406 ML-DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           M  +  +VPD+  Y +L++G+C+ G  +D  +L  E
Sbjct: 288 MQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 323


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 183/340 (53%), Gaps = 9/340 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EI   G++PS+  +  ++  LCK G   +A  +  +  ++G     V++NT+I+  CK +
Sbjct: 166 EIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDR 225

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E     S M   G+ P+V TYS++++G C   +L++A  L  +M  R + PN V FT
Sbjct: 226 RANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFT 285

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG CK G I       EAR++ + M  NG+ PD  TY+ L+DG+C +  ++ A  + 
Sbjct: 286 ILVDGLCKEGMI------LEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLF 339

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+ +G       +  LI+G C+  ++ EA+ +L EM    L PD  TY+ ++  FC+ 
Sbjct: 340 DIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQA 399

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +   +L KEM S G LP   TY+ L++GLCKHG L  A  LL  M +  + P    Y
Sbjct: 400 GRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIY 459

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           NIL++G C  G  E   +L S    KG+      YT ++S
Sbjct: 460 NILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMIS 499



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 214/416 (51%), Gaps = 18/416 (4%)

Query: 46  FASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105
           FA  L T  T + GL           +G   +A+Q  + + +   +        +ID + 
Sbjct: 172 FAPSLITYTTIIKGLC---------KIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLC 222

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           +       + F+ E++D G  P+V  ++ ++H  C  G++ +A  +F +   R +    V
Sbjct: 223 KDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTV 282

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +F  L++G CK   + E  R+  +M  +G+ PD YTYSAL++G C ++++D+A+ L   M
Sbjct: 283 TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             +G  P+  ++  LI+GHCK+ R++      EA+ ++ EM    L PD +TY+ L+ GF
Sbjct: 343 VGKGFAPSVRVYNILINGHCKSRRLN------EAKTLLSEMYDRDLTPDTVTYSTLMQGF 396

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C+ G  + A  + KEM   G+  D++ ++ L+ G C+ G + EA R+L+ M +  ++P  
Sbjct: 397 CQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHI 456

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             Y ++I   C  G  +    L   +   G  P+V TY  +++GL K G    A  +   
Sbjct: 457 CIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRK 516

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSS 458
           M+  G +P+  TYN+ ++G  ++G+P +  +L  E   +G  +D + +  L+   S
Sbjct: 517 MVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLES 572



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 172/334 (51%), Gaps = 13/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR---GLHATAVSFNTLINGHCKAKNLDEG 183
           P+VY   +L++ LC   +       F   GK    GL  T V+F TL+NG C    + + 
Sbjct: 102 PNVYTLTILINCLCHSNR-DHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDA 160

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   +   G  P + TY+ +I GLCK     +A  LL +M E+G  P+ V + T+ID 
Sbjct: 161 VKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDS 220

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ R +      EA     EM   G+ P+ +TY+ +L GFC  G L  A  + K+MI 
Sbjct: 221 LCKDRRAN------EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIG 274

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R +  + V FT L+ G C+ G ++EA R+   M + G++PD  TY+ ++D +C       
Sbjct: 275 RNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDE 334

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L   M   G  P+V  YN L+NG CK  +L  A  LL  M D  + PD +TY+ L++
Sbjct: 335 AQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQ 394

Query: 424 GHCKHGNPEDFDKLQSEK---GLVSDYACYTSLV 454
           G C+ G P+   KL  E    GL+ D   Y+ L+
Sbjct: 395 GFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILL 428



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 189/378 (50%), Gaps = 15/378 (3%)

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           T GT L GL   A +I         DA++ F  + K  F         +I  + +    T
Sbjct: 143 TFGTLLNGLCSKAKII---------DAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTT 193

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             L    ++ + G  P V  +N ++  LCK+ +  +A   F E   +G+    V++++++
Sbjct: 194 NALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSIL 253

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G C    L+E   L   M G  + P+  T++ L++GLCKE  + +A  +   M E G+ 
Sbjct: 254 HGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVE 313

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   ++ L+DG+C   ++D      EA+K+ D M   G  P    Y IL++G CK   L
Sbjct: 314 PDAYTYSALMDGYCLQSQMD------EAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRL 367

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A  +  EM  R +  D V ++ L+ GFC+ G+   A+++ +EM   GL PD  TY+++
Sbjct: 368 NEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSIL 427

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +D  CK+G     FRLLK M+     P +  YN L+ G+C  G+L+ A  L   +   G+
Sbjct: 428 LDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGI 487

Query: 412 VPDDITYNILLEGHCKHG 429
            P  +TY +++ G  K G
Sbjct: 488 QPSVVTYTVMISGLLKEG 505


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 225/436 (51%), Gaps = 8/436 (1%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFAS-ILETRGTHLPGLV 61
           RL+ H Y  ++H L   +    A   L  LI   K + SS  +F + +L T   +   ++
Sbjct: 133 RLSSHNYCLIIHILAWSRQFPLAMKFLSELIELSKDVSSSEDVFQNLVLCTEHCNWNPVI 192

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            + L+  YV L  + ++   F+ + K  F      C C+++ + +          Y E+ 
Sbjct: 193 FEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMG 252

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G   + Y FN+L + LC++G +       ++  + G     V++NTLI+ + +   L+
Sbjct: 253 RIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLE 312

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           + F L  +M   G+ PD+ +Y++L+ GLC+  R+ +A  L H M +RG+ P+ V++ TLI
Sbjct: 313 DAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLI 372

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
             +CK+G       ++EAR ++ EM   G++PD  T  IL++G+ +EG L SAL++  E+
Sbjct: 373 GAYCKDGM------LQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEI 426

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            K G+ + +  +  LI   CR  +   A+ +L  +L+   +PD   Y  +I+ FC++ + 
Sbjct: 427 QKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNV 486

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                L  EM +  + P  +TY +L++ +C+  +  +   L+  M++  V+PD      L
Sbjct: 487 SEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRAL 546

Query: 422 LEGHCKHGNPEDFDKL 437
           + G+CK GN +  + L
Sbjct: 547 VNGYCKEGNADKAESL 562



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 110/281 (39%), Gaps = 29/281 (10%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+T++       M  +AR LLH ++   G+G     F   +   G    G ++ AL +V 
Sbjct: 368 YNTLIGAYCKDGMLQEARSLLHEMI---GIGIHPDSFTCRILVEGYGREGRLISALNLVV 424

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
                    IQ   +   H         + LI  + R + P         IL+  + P  
Sbjct: 425 --------EIQKLGVTVAHDIY------KYLIISLCREDRPFAAKSLLERILEDSFQPDS 470

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
            ++N L+   C+   + +A ++  E   R    T  ++ +LI+  C+     +G  L   
Sbjct: 471 DIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVE 530

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  S + PD     AL+NG CKE   D AE LL    +      D  F    D    N  
Sbjct: 531 MVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAQ------DFQF---FDSESFNSL 581

Query: 250 IDMAGDMKEARKIV---DEMCTNGLNPDKITYTILLDGFCK 287
           + +  D+    K++   D M   G  P+ +T   ++ G  K
Sbjct: 582 VKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWK 622



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C I+R +         G  +E+++    P   +   L++  CKEG    A+ +   F 
Sbjct: 514 CMCEINRSVDGE------GLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFA 567

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +      + SFN+L+  +    N  +   L+  M  +G  P+  T   +I+G+ K  RL+
Sbjct: 568 QDFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWKSMRLN 627


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 228/469 (48%), Gaps = 37/469 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLH-----LIVSKKGMGSSASLFASILETRGTHLPGLV 61
           +  YS ++H LV  K+ S AR LL+     L+ S K   +    F+ +   + +     V
Sbjct: 58  IQLYSAIIHVLVGSKLLSHARYLLNDLVQNLVKSHKPYHACQLAFSELSRLKSSKFTPNV 117

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
              L+IV   +  +++A+  +    K    +  + C  L+  +++T    +    Y E++
Sbjct: 118 YGELIIVLCKMELVEEALSMYH---KVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMI 174

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G SPSV  F  L+   C++G +  AQ +FDE   +G+  T + +  LI G C    ++
Sbjct: 175 SNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIE 234

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   +   M   G+ P+VYTY+ L++G CK      A  L  +M   GL P+ V F  LI
Sbjct: 235 EAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILI 294

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DG CK G +  A                             GD+ EA  +  E+    ++
Sbjct: 295 DGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVS 354

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD  TY+IL+ G C     E A +I ++M K GI  ++V + +LI G C+ GK+ +A  +
Sbjct: 355 PDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEI 414

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             +M + G++P+  T++ +ID +CK  + +    +  EM      P V TY A+++G CK
Sbjct: 415 CSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCK 474

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441
           +G +K A  L   MLD G+ P+  T + LL+G CK G   D  +L +EK
Sbjct: 475 YGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEK 523



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 177/325 (54%), Gaps = 19/325 (5%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y ++L  G  P V  F +L+  LCK G++K A+ +F    K  +      +N+LI+
Sbjct: 271 ALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLID 330

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
            +CK  ++ E   L   +E   + PDV+TYS LI GLC  +R ++A  +  +M + G+  
Sbjct: 331 AYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILA 390

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + +LIDG CK G++D      +A +I  +M  NG+ P+ IT++ L+DG+CK  +L+
Sbjct: 391 NSVTYNSLIDGCCKEGKMD------KALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQ 444

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           +A+ I  EM+ + +  D V +TA+I G C+ G + EA ++  +ML  G+ P+  T + ++
Sbjct: 445 AAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLL 504

Query: 353 DCFCKNGDTKTGFRLLKE----------MRSDGHLPAVE---TYNALMNGLCKHGQLKNA 399
           D  CK+G       L  E          + + G  P++     Y AL++GLC+ GQ   A
Sbjct: 505 DGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKA 564

Query: 400 NMLLDTMLDLGVVPDDITYNILLEG 424
             L   M   G+ PD++ Y ++L G
Sbjct: 565 VKLFSDMRRYGLQPDEVIYVVMLRG 589



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 151/266 (56%), Gaps = 19/266 (7%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +    +  +  +LE+  +  SP V+ +++L+  LC   + ++A  +F++  K G
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG 387

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + A +V++N+LI+G CK   +D+   + S M  +G+ P+V T+S LI+G CK   L  A 
Sbjct: 388 ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAM 447

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  EM  + L+P+ V +T +IDGHCK       G MKEA K+  +M  NG+ P+  T +
Sbjct: 448 GIYSEMVIKSLSPDVVTYTAMIDGHCK------YGSMKEALKLYSDMLDNGITPNCYTIS 501

Query: 280 ILLDGFCKEGDLESALDIRKEMIK-------------RGIELDNVAFTALISGFCRGGKV 326
            LLDG CK+G +  AL++  E I+             +    ++VA+TALI G C+ G+ 
Sbjct: 502 CLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQF 561

Query: 327 VEAERMLREMLKVGLKPDDATYTMVI 352
            +A ++  +M + GL+PD+  Y +++
Sbjct: 562 SKAVKLFSDMRRYGLQPDEVIYVVML 587



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 16/331 (4%)

Query: 130 YVFNVLMHKLCKEGKIKDA-QMVFDEFGK-RGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           Y+ N L+  L K  K   A Q+ F E  + +    T   +  LI   CK + ++E     
Sbjct: 79  YLLNDLVQNLVKSHKPYHACQLAFSELSRLKSSKFTPNVYGELIIVLCKMELVEEAL--- 135

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S+    G    +   + L+  L K  R +    +  EM   GL+P+ + F TLIDG C+ 
Sbjct: 136 SMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQ 195

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G      D+  A+++ DEM   G+ P  I YTIL+ G C +  +E A  + + M + G+ 
Sbjct: 196 G------DLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVY 249

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            +   +  L+ G+C+     +A R+ ++ML  GL PD  T+ ++ID  CK G+ K    L
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL 309

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M      P +  YN+L++  CK G +  A  L   +    V PD  TY+IL+ G C 
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 428 HGNPED----FDKLQSEKGLVSDYACYTSLV 454
               E+    F+K+  E G++++   Y SL+
Sbjct: 370 VSRTEEAGNIFEKMTKE-GILANSVTYNSLI 399



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 163/330 (49%), Gaps = 24/330 (7%)

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           D ++ T L   +    LE  +     ++ +++ ++H L     +  A+ + ++       
Sbjct: 31  DSLITTVLNCRSPWKALEFFNAAPEKNIQLYSAIIHVLVGSKLLSHARYLLNDL------ 84

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
                   L+  H         F   S ++ S   P+VY    LI  LCK   +++A  +
Sbjct: 85  -----VQNLVKSHKPYHACQLAFSELSRLKSSKFTPNVY--GELIIVLCKMELVEEALSM 137

Query: 222 LHEM-CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
            H++     +   +V+   L+    K GR ++        +I +EM +NGL+P  IT+  
Sbjct: 138 YHKVGAALTIQACNVLLYVLV----KTGRFELLW------RIYEEMISNGLSPSVITFGT 187

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L+DG C++GDL  A ++  EM  +GI    + +T LI G C   K+ EAE M R M +VG
Sbjct: 188 LIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVG 247

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  TY  ++D +CK  + K   RL ++M  +G +P V T+  L++GLCK G++K A 
Sbjct: 248 VYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAAR 307

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            L   M+   V P+   YN L++ +CK G+
Sbjct: 308 NLFVNMIKFSVTPNIAVYNSLIDAYCKVGD 337



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF-------------DEFGKRG 159
            L  Y ++LD G +P+ Y  + L+  LCK+GKI DA  +F             D  G + 
Sbjct: 481 ALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKP 540

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  LI+G C+     +  +L S M   G++PD   Y  ++ GL +   +    
Sbjct: 541 SLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI---L 597

Query: 220 LLLH-EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           ++LH +M + G+ PN  +   L + + ++G +  A +
Sbjct: 598 MMLHADMLKFGVIPNSAVHVILCECYQESGFLKSAQN 634


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 215/438 (49%), Gaps = 9/438 (2%)

Query: 25  QARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84
           Q   LL  IV       +    +  +E  G       L  L+  +  L  +D A   F  
Sbjct: 96  QFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSK 155

Query: 85  LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
           + K   +  A     LI+ + +       + F+ +    G  P+VY +  +++ LCK G+
Sbjct: 156 MIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGE 215

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
              A  +F +  + G     V++N LI+  CK K ++E   + S M+   + PD++TY++
Sbjct: 216 TTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNS 275

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LI GLC   R  +A  LL+EM    + PN   F  L+D  CK G++       EA+ +  
Sbjct: 276 LIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVS------EAQGVFK 329

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
            M   G+ PD +TY+ L+ G+    ++  A  +   MI +G + D  ++  LI G+C+  
Sbjct: 330 TMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAK 389

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++ EA+++  EM+  GL PD+  Y  +I   C+ G  +    L K M S+G+LP + TY+
Sbjct: 390 RIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYS 449

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
            L++G CK G L  A  L   M    + PD   YNIL++  CK GN +D  KL SE   +
Sbjct: 450 MLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQ 509

Query: 442 GLVSDYACYTSLVSKSSK 459
           GL+ +   YT++++   K
Sbjct: 510 GLLPNVQIYTTIINNLCK 527



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 157/288 (54%), Gaps = 6/288 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+++ FNVL+  +CKEGK+ +AQ VF    + G+    V++++L+ G+     + E  +L
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G +PD ++Y+ LI G CK  R+D+A+ L +EM  +GLTP++V + TLI G C+
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR      ++EA+ +   M +NG  PD  TY++LLDGFCKEG L  A  + + M    +
Sbjct: 423 LGR------LREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYL 476

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D   +  LI   C+ G + +A ++  E+   GL P+   YT +I+  CK G       
Sbjct: 477 KPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             + M  DG  P   +YN ++ G  ++     A  L+  M D G V +
Sbjct: 537 AFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAE 584



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  + +N+L+   CK  +I +A+ +F+E   +GL    V++NTLI+G C+   L E 
Sbjct: 370 GCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREA 429

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M  +G  PD++TYS L++G CKE  L  A  L   M    L P+  ++  LID 
Sbjct: 430 QDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDA 489

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK       G++K+ARK+  E+   GL P+   YT +++  CKEG L+ AL+  + M  
Sbjct: 490 MCK------FGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEG 543

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
            G   D  ++  +I GF +      A +++ EM   G   +  T T 
Sbjct: 544 DGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTTW 590



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 19/193 (9%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI-V 68
           Y+T++H L       +A+DL       K M S+             +LP L   ++++  
Sbjct: 413 YNTLIHGLCQLGRLREAQDLF------KNMHSNG------------NLPDLFTYSMLLDG 454

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           +   G+L  A + FR+++  Y +        LID M +          + E+   G  P+
Sbjct: 455 FCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPN 514

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V ++  +++ LCKEG + +A   F      G      S+N +I G  + K+     +L  
Sbjct: 515 VQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIG 574

Query: 189 VMEGSGMRPDVYT 201
            M   G   +  T
Sbjct: 575 EMRDRGFVAEAGT 587


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 243/497 (48%), Gaps = 37/497 (7%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPG 59
           +FR  + +Y  +VH L   +M+ + R  L+ +V         ++    L    R      
Sbjct: 97  NFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSP 156

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYL 118
            V D ++ VYV+ G   +A+  F  + K   RIP+ R C  L++ +++          Y 
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGK-CGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 215

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G  P V++ +++++  CK+GK+ +A     +    G+    V++++LING+    
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIF 237
           +++    +   M   G+  +V TY+ LI G CK+ ++D+AE +L  M E   L P++  +
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAY 335

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
             LIDG+C+ G+ID A                             G++ EA  ++  M  
Sbjct: 336 GVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 395

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             L PD  +Y  LLDG+C+EG    A ++  +M++ GIE   + +  L+ G CR G   +
Sbjct: 396 WNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDD 455

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A ++   M+K G+ PD+  Y+ ++D   K  + +    L K++ + G   +  T+N +++
Sbjct: 456 ALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMIS 515

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVS 445
           GLCK G++  A  + D M DLG  PD ITY  L++G+CK  N     K++     + +  
Sbjct: 516 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISP 575

Query: 446 DYACYTSLVSKSSKYRQ 462
               Y SL+S   K R+
Sbjct: 576 SIEMYNSLISGLFKSRR 592



 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/484 (30%), Positives = 221/484 (45%), Gaps = 64/484 (13%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           ++G  S A      +   G     L  + L+     +G  DDA+Q + L+ K        
Sbjct: 414 REGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEV 473

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           G   L+D + +          + +IL  G++ S   FN ++  LCK GK+ +A+ +FD+ 
Sbjct: 474 GYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 533

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G     +++ TLI+G+CKA N+ + F++K  ME   + P +  Y++LI+GL K  RL
Sbjct: 534 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRL 593

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------------- 253
            +   LL EM  RGLTPN V +  LIDG CK G +D A                      
Sbjct: 594 VEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM 653

Query: 254 -------GDMKEA----RKIVD----------------------------EMCTNGLNPD 274
                  G + EA    +K+VD                            E C   L P+
Sbjct: 654 VSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPN 713

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            I Y I + G CK G ++ A      +  +G   DN  +  LI G+   G V EA R+  
Sbjct: 714 NIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRD 773

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML+ GL P+  TY  +I+  CK+ +     RL  ++   G  P V TYN L++G CK G
Sbjct: 774 EMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIG 833

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            +  A  L D M++ G+ P  +TY+ L+ G CKHG+ E   KL ++    G+ S    Y 
Sbjct: 834 NMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYC 893

Query: 452 SLVS 455
           +LV 
Sbjct: 894 TLVQ 897



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    + VL+   C+ GKI DA  + DE  + GL       N+LING+CK   + E   +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    ++PD Y+Y+ L++G C+E    +A  L  +M + G+ P  + + TL+ G C+
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G  D      +A +I   M   G+ PD++ Y+ LLDG  K  + E A  + K+++ RG 
Sbjct: 450 VGAFD------DALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 503

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               + F  +ISG C+ GK+VEAE +  +M  +G  PD  TY  +ID +CK  +    F+
Sbjct: 504 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK 563

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M  +   P++E YN+L++GL K  +L     LL  M   G+ P+ +TY  L++G C
Sbjct: 564 VKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWC 623

Query: 427 KHG 429
           K G
Sbjct: 624 KEG 626



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 195/441 (44%), Gaps = 99/441 (22%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G  P+V  +N L+  LC+ G   DA  ++    KRG+    V ++TL++G  K +
Sbjct: 427 KMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 486

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N +    L   +   G      T++ +I+GLCK  ++ +AE +  +M + G +P+ + + 
Sbjct: 487 NFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 546

Query: 239 TLIDGHCKNGRIDMAGDMK-----------------------EARKIVD------EMCTN 269
           TLIDG+CK   +  A  +K                       ++R++V+      EM   
Sbjct: 547 TLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIR 606

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P+ +TY  L+DG+CKEG L+ A     EM + G+  + +  + ++SG  R G++ EA
Sbjct: 607 GLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEA 666

Query: 330 ERMLREMLKVGLKPD--------------------------------DATYTMVIDCFCK 357
             ++++M+  G  PD                                +  Y + I   CK
Sbjct: 667 NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCK 726

Query: 358 NG-----------------------------------DTKTGFRLLKEMRSDGHLPAVET 382
            G                                   +    FRL  EM   G +P + T
Sbjct: 727 TGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT 786

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS--- 439
           YNAL+NGLCK   +  A  L   +   G+ P+ +TYN L++G+CK GN +   KL+    
Sbjct: 787 YNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846

Query: 440 EKGLVSDYACYTSLVSKSSKY 460
           E+G+      Y++L++   K+
Sbjct: 847 EEGISPSVVTYSALINGLCKH 867



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 94/160 (58%), Gaps = 6/160 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P++  +N L++ LCK   +  AQ +F +  ++GL    V++NTLI+G+CK  
Sbjct: 774 EMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIG 833

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D  F+LK  M   G+ P V TYSALINGLCK   ++ +  LL++M + G+    + + 
Sbjct: 834 NMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYC 893

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           TL+ G+ +      +G+M++  K+ D M    L+   I++
Sbjct: 894 TLVQGYIR------SGEMQKIHKLYDMMHIRCLSTTAISH 927



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 23/276 (8%)

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE------RGLTPNDVI 236
           GF  + V +    RP+V +Y  L++ L +    D+    L+++ +      RG    +VI
Sbjct: 87  GF-FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRG----NVI 141

Query: 237 FTTLIDGHCKNGRIDMAGDM-----------KEARKIVDEMCTNGLNPDKITYTILLDGF 285
           +  L+  + +        DM           K A  + D M   G  P   +   LL+  
Sbjct: 142 WDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNL 201

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            K G+  +A  + ++MI+ GI  D    + +++ FC+ GKV EA   +++M  +G++P+ 
Sbjct: 202 VKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNI 261

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +I+ +   GD +    +LK M   G    V TY  L+ G CK  ++  A  +L  
Sbjct: 262 VTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRG 321

Query: 406 ML-DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           M  +  +VPD+  Y +L++G+C+ G  +D  +L  E
Sbjct: 322 MQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 357


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 240/462 (51%), Gaps = 14/462 (3%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           ++L     ++H L   K +S+ R  L   V         S+F +I       +  ++ D 
Sbjct: 99  VSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADM 158

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L++ Y +    +   + F+    + +++ A  C+ L+  +++ N        Y E++   
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK 218

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+V+ FNV+++ LCK GK+  A+ V ++    G     VS+NTLI+G+CK     + +
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY 278

Query: 185 RLKSV---MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  +V   M  + + P++ T++ LI+G  K++ L  +  +  EM ++ + PN + + +LI
Sbjct: 279 KADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLI 338

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G C  G+I  A  M+      D+M + G+ P+ ITY  L++GFCK   L+ ALD+   +
Sbjct: 339 NGLCNGGKISEAISMR------DKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSV 392

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             +G       +  LI  +C+ GK+ +   +  EM + G+ PD  TY  +I   C+NG+ 
Sbjct: 393 KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   +L  ++ S G LP + T++ LM G C+ G+ + A MLL  M  +G+ P  +TYNI+
Sbjct: 453 EAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIV 511

Query: 422 LEGHCKHGNPEDF----DKLQSEKGLVSDYACYTSLVSKSSK 459
           ++G+CK GN +       +++ E+ L  + A Y  L+   S+
Sbjct: 512 MKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQ 553



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 179/318 (56%), Gaps = 8/318 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++   SP++  FN+L+    K+  +  +  VF E   + +    +S+N+LING C   
Sbjct: 286 EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGG 345

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E   ++  M  +G++P++ TY+ALING CK + L +A  +   +  +G  P   ++ 
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYN 405

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID +CK G+ID    +KE      EM   G+ PD  TY  L+ G C+ G++E+A  + 
Sbjct: 406 MLIDAYCKLGKIDDGFALKE------EMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++  +G+  D V F  L+ G+CR G+  +A  +L+EM K+GLKP   TY +V+  +CK 
Sbjct: 460 DQLTSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKE 518

Query: 359 GDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           G+ K    +  +M  +  L   V +YN L+ G  + G+L++ANMLL+ ML+ G+VP+ IT
Sbjct: 519 GNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRIT 578

Query: 418 YNILLEGHCKHGNPEDFD 435
           Y I+ E     G   D +
Sbjct: 579 YEIVKEEMVDQGFVPDIE 596



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 167/328 (50%), Gaps = 33/328 (10%)

Query: 100 LIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID   +  NLP  ++  + E+LD    P+V  +N L++ LC  GKI +A  + D+    
Sbjct: 302 LIDGFWKDDNLPG-SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSA 360

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    +++N LING CK   L E   +   ++G G  P    Y+ LI+  CK  ++DD 
Sbjct: 361 GVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG 420

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  EM   G+ P+   +  LI G C+NG I+       A+K+ D++ + GL PD +T+
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE------AAKKLFDQLTSKGL-PDLVTF 473

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            IL++G+C++G+   A  + KEM K G++  ++ +  ++ G+C+ G +  A  M  +M K
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533

Query: 339 V-GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
              L+ + A+Y +++  + + G  +    LL EM   G +P   TY              
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY-------------- 579

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGH 425
              ++ + M+D G VPD       +EGH
Sbjct: 580 --EIVKEEMVDQGFVPD-------IEGH 598


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 225/436 (51%), Gaps = 8/436 (1%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFAS-ILETRGTHLPGLV 61
           RL+ H Y  ++H L   +    A   L  LI   K + SS  +F + +L T   +   ++
Sbjct: 129 RLSSHNYCLIIHILAWSRQFPLAMKFLSELIELSKDVSSSEDVFQNLVLCTEHCNWNPVI 188

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            + L+  YV L  + ++   F+ + K  F      C C+++ + +          Y E+ 
Sbjct: 189 FEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMG 248

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G   + Y FN+L + LC++G +       ++  + G     V++NTLI+ + +   L+
Sbjct: 249 RIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLE 308

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           + F L  +M   G+ PD+ +Y++L+ GLC+  R+ +A  L H M +RG+ P+ V++ TLI
Sbjct: 309 DAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLI 368

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
             +CK+G       ++EAR ++ EM   G++PD  T  IL++G+ +EG L SAL++  E+
Sbjct: 369 GAYCKDGM------LQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEI 422

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            K G+ + +  +  LI   CR  +   A+ +L  +L+   +PD   Y  +I+ FC++ + 
Sbjct: 423 QKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNV 482

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                L  EM +  + P  +TY +L++ +C+  +  +   L+  M++  V+PD      L
Sbjct: 483 SEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRAL 542

Query: 422 LEGHCKHGNPEDFDKL 437
           + G+CK GN +  + L
Sbjct: 543 VNGYCKEGNADKAESL 558



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 110/281 (39%), Gaps = 29/281 (10%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+T++       M  +AR LLH ++   G+G     F   +   G    G ++ AL +V 
Sbjct: 364 YNTLIGAYCKDGMLQEARSLLHEMI---GIGIHPDSFTCRILVEGYGREGRLISALNLVV 420

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
                    IQ   +   H         + LI  + R + P         IL+  + P  
Sbjct: 421 --------EIQKLGVTVAHDIY------KYLIISLCREDRPFAAKSLLERILEDSFQPDS 466

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
            ++N L+   C+   + +A ++  E   R    T  ++ +LI+  C+     +G  L   
Sbjct: 467 DIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVE 526

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  S + PD     AL+NG CKE   D AE LL    +      D  F    D    N  
Sbjct: 527 MVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAK------DFQF---FDSESFNSL 577

Query: 250 IDMAGDMKEARKIV---DEMCTNGLNPDKITYTILLDGFCK 287
           + +  D+    K++   D M   G  P+ +T   ++ G  K
Sbjct: 578 VKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWK 618



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C I+R +         G  +E+++    P   +   L++  CKEG    A+ +   F 
Sbjct: 510 CMCEINRSVDGE------GLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFA 563

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K      + SFN+L+  +    N  +   L+  M  +G  P+  T   +I+G+ K  RL+
Sbjct: 564 KDFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWKSMRLN 623


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 208/387 (53%), Gaps = 9/387 (2%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           + G +++A++ F  + +       R    LI  +  +      L  + E+ + G  P+V+
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + VL+  LCKE K+ +A+ +  E  ++GL  + V++N LI+G+CK   +D+ F +  +M
Sbjct: 336 TYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM 395

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E +   P+  TY+ LI GLCK+ ++  A  LL++M ER L+P+ + + +LI G CK    
Sbjct: 396 ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK---- 451

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               D++ A +++  M  NGL PD+ TY++ +D  CKEG +E A  +   +  +G++ + 
Sbjct: 452 --VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +TALI G+C+ GK+  A  +L  ML     P+  TY ++I+  CK    K    L+ +
Sbjct: 510 VIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M + G  P V TY  L+  + K G   +A  + + M+ LG  PD  TY   L  +   G 
Sbjct: 570 MLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGM 629

Query: 431 PEDFDKL---QSEKGLVSDYACYTSLV 454
            E+ D +    +E+G++ D   YT L+
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLI 656



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 70/464 (15%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P F+  +H+YS+M++ L+  ++                +G +  +  S++++  +     
Sbjct: 95  PGFKHNVHSYSSMLNILIRARL----------------LGVAEKIRISMIKSCCS----- 133

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           + D L ++ V      D    F+   + Y  I     + L+   M+T         YLE+
Sbjct: 134 IEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKT--------VYLEL 185

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L+   SP++Y FN +++  CK G + +A++   +  + GLH    ++ +LI GHC+ K +
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL------------------ 222
           D  + +  +M   G + +  +Y+ LI+GLC+  R+++A  L                   
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 223 -----------------HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
                            +EM E+G  PN   +T LIDG CK  ++D      EARK++ E
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMD------EARKMLSE 359

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GL P  +TY  L+DG+CKEG ++ A +I   M       +   +  LI G C+  K
Sbjct: 360 MSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRK 419

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V +A  +L +ML+  L P   TY  +I   CK  D ++ +RLL  M  +G +P   TY+ 
Sbjct: 420 VHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            ++ LCK G+++ A  L D++   GV  +++ Y  L++G+CK G
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 218/452 (48%), Gaps = 38/452 (8%)

Query: 3   FRLTLHAYSTMV----HFLVAHKMHSQARDLLHLIVS--------------KKGMGSSAS 44
           F+ TL  Y+T++     FL+  +M +   +LL+  +S              K G    A 
Sbjct: 155 FKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAE 214

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR------ 98
           L+AS +   G H       +L++ +     +D+A + F ++       P +GC+      
Sbjct: 215 LYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM-------PQKGCQRNEVSY 267

Query: 99  -CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             LI  +         L  + ++ +    P+V  + VL++ L   G+  +A  +F+E  +
Sbjct: 268 TNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE 327

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           +G      ++  LI+G CK   +DE  ++ S M   G+ P V TY+ALI+G CKE  +DD
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDD 387

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +L  M      PN   +  LI G CK  ++       +A  ++++M    L+P  IT
Sbjct: 388 AFEILDLMESNSCGPNTRTYNELICGLCKKRKV------HKAMALLNKMLERKLSPSLIT 441

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L+ G CK  DLESA  +   M + G+  D   ++  I   C+ G+V EA  +   + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVK 501

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G+K ++  YT +ID +CK G     + LL+ M +D  LP   TYN L+ GLCK  ++K
Sbjct: 502 AKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMK 561

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            A+ L+  ML +GV P  +TY IL+    K G
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDG 593



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 9/336 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           ++ + P++  +N ++  L K   I + + V+ E     +     +FN ++NG+CK  N+ 
Sbjct: 152 EFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVV 211

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E     S +  +G+ PD +TY++LI G C+   +D+A  +   M ++G   N+V +T LI
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C+ GRI+      EA K+  +M  +   P   TYT+L+      G    AL++  EM
Sbjct: 272 HGLCEAGRIN------EALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            ++G E +   +T LI G C+  K+ EA +ML EM + GL P   TY  +ID +CK G  
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
              F +L  M S+   P   TYN L+ GLCK  ++  A  LL+ ML+  + P  ITYN L
Sbjct: 386 DDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           + G CK  + E   +L S   E GLV D   Y+  +
Sbjct: 446 IHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFI 481



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 159/324 (49%), Gaps = 23/324 (7%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ Y +NVL+  LCKE K+K+A  +  +    G+  T V++  LI    K    D   ++
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G +PDV TY+A ++    +  L++ + ++ +M E G+ P+ V +T LIDG+ +
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 247 NGRIDMAGDM---------KEARKIVDEMCTN--------------GLNPDKITYTILLD 283
            G    A D          K +  IV  +  N              G++      ++ + 
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIA 721

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
              K  + E AL + ++M++ G  +D   + ALI+GFC+  ++ EA+ ++  M + G+ P
Sbjct: 722 DVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 781

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
            +  Y  ++DC CK G      RL+  M  +G LP +E+Y  L+ GL   G  + A  + 
Sbjct: 782 SEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVF 841

Query: 404 DTMLDLGVVPDDITYNILLEGHCK 427
             +L  G   D++ + +L++G  K
Sbjct: 842 HGLLSCGYNYDEVAWKVLIDGLLK 865


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 147/517 (28%), Positives = 249/517 (48%), Gaps = 80/517 (15%)

Query: 3   FRLTLHAYSTMV----HFLVAHKMHSQARDLLHLIVS--------------KKGMGSSAS 44
           F+ TL  Y+T++     FL+  +M +   +LL+  +S              K G    A 
Sbjct: 155 FKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAE 214

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
           L+AS +   G H       +L++ +     +D+A + F ++       P +GC+   + +
Sbjct: 215 LYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM-------PQKGCQ--RNEV 265

Query: 105 MRTNL--------------------------PTV------------------TLGFYLEI 120
             TNL                          PTV                   L  + E+
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
            + G  P+V+ + VL+  LCKE K+ +A+ +  E  ++GL  + V++N LI+G+CK   +
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+ F +  +ME +   P+  TY+ LI GLCK+ ++  A  LL++M ER L+P+ + + +L
Sbjct: 386 DDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G CK        D++ A +++  M  NGL PD+ TY++ +D  CKEG +E A  +   
Sbjct: 446 IHGQCK------VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDS 499

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +  +G++ + V +TALI G+C+ GK+  A  +L  ML     P+  TY ++I+  CK   
Sbjct: 500 VKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKK 559

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            K    L+ +M + G  P V TY  L+  + K G   +A  + + M+ LG  PD  TY  
Sbjct: 560 MKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTA 619

Query: 421 LLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            L  +   G  E+ D +    +E+G++ D   YT L+
Sbjct: 620 FLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLI 656



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 224/464 (48%), Gaps = 70/464 (15%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P F+  +H+YS+M++ L+  ++                +G +  +  S++++  +     
Sbjct: 95  PGFKHNVHSYSSMLNILIRARL----------------LGVAEKIRISMIKSCCS----- 133

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           + D L ++ V      D    F+   + Y  I     + L+   M+T         YLE+
Sbjct: 134 IEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKT--------VYLEL 185

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L+   SP++Y FN +++  CK G + +A++   +  + GLH    ++ +LI GHC+ K +
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL------------------ 222
           D  + +  +M   G + +  +Y+ LI+GLC+  R+++A  L                   
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 223 -----------------HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
                            +EM E+G  PN   +T LIDG CK  ++D      EARK++ E
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMD------EARKMLSE 359

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GL P  +TY  L+DG+CKEG ++ A +I   M       +   +  LI G C+  K
Sbjct: 360 MSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRK 419

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V +A  +L +ML+  L P   TY  +I   CK  D ++ +RLL  M  +G +P   TY+ 
Sbjct: 420 VHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            ++ LCK G+++ A  L D++   GV  +++ Y  L++G+CK G
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 9/336 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           ++ + P++  +N ++  L K   I + + V+ E     +     +FN ++NG+CK  N+ 
Sbjct: 152 EFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVV 211

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E     S +  +G+ PD +TY++LI G C+   +D+A  +   M ++G   N+V +T LI
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C+ GRI+      EA K+  +M  +   P   TYT+L+      G    AL++  EM
Sbjct: 272 HGLCEAGRIN------EALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            ++G E +   +T LI G C+  K+ EA +ML EM + GL P   TY  +ID +CK G  
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
              F +L  M S+   P   TYN L+ GLCK  ++  A  LL+ ML+  + P  ITYN L
Sbjct: 386 DDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           + G CK  + E   +L S   E GLV D   Y+  +
Sbjct: 446 IHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFI 481



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 184/416 (44%), Gaps = 85/416 (20%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  + ++V +  LCKEG++++A  +FD    +G+ A  V +  LI+G+CK   +D  
Sbjct: 469 GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           + L   M      P+ YTY+ LI GLCKE ++ +A  L+ +M   G+ P  V +T LI  
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE 588

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
             K+G  D A                             G ++E   ++ +M   G+ PD
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 275 KITYTILLDGFCKEG--------------------------------------------- 289
            +TYT+L+DG+ + G                                             
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 290 --------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
                   + E AL + ++M++ G  +D   + ALI+GFC+  ++ EA+ ++  M + G+
Sbjct: 709 IDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGM 768

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P +  Y  ++DC CK G      RL+  M  +G LP +E+Y  L+ GL   G  + A  
Sbjct: 769 SPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKA 828

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +   +L  G   D++ + +L++G  K    ++  +L     EKG   +   Y+ L+
Sbjct: 829 VFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLI 884



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 137/346 (39%), Gaps = 82/346 (23%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ Y +NVL+  LCKE K+K+A  +  +    G+  T V++  LI    K    D   ++
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G +PDV TY+A ++    +  L++ + ++ +M E G+ P+ V +T LIDG+ +
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 247 NGRIDMAGD-----------------------------MKEAR----------------- 260
            G    A D                             MKE R                 
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIA 721

Query: 261 -KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            K+ ++M  +G   D   Y  L+ GFC++  LE A  +   M +RG+      + +L+  
Sbjct: 722 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDC 781

Query: 320 FCRGGKVVEAERMLREMLKVGLKP-----------------------------------D 344
            C+ G   EA R++  M++ GL P                                   D
Sbjct: 782 CCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYD 841

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +  + ++ID   K         L+  M   G  P   TY+ L+ GL
Sbjct: 842 EVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 114/258 (44%), Gaps = 58/258 (22%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R  L      F   ++D G  PS+Y+ ++L+  L  E ++K+ +       + G
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR------SEIG 708

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + + +   NTL          +   +L   M   G   DV  Y ALI G C++ RL++A+
Sbjct: 709 IDSVS---NTL--------EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQ 757

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP------ 273
            L+H M ERG++P++ I+ +L+D  CK       G   EA ++VD M  NGL P      
Sbjct: 758 GLVHHMKERGMSPSEDIYNSLLDCCCK------LGVYAEAVRLVDAMVENGLLPLLESYK 811

Query: 274 -----------------------------DKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                                        D++ + +L+DG  K   ++   ++   M ++
Sbjct: 812 LLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEK 871

Query: 305 GIELDNVAFTALISGFCR 322
           G + + + ++ LI G  R
Sbjct: 872 GCQPNPLTYSLLIEGLER 889


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 229/455 (50%), Gaps = 30/455 (6%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPGLVLD 63
            L+ Y+ +++        S A  LL  ++ K G   S    +S+L     G  +   V  
Sbjct: 119 NLYTYNILINCFCRRSQISLALALLGKMM-KLGYEPSIVTLSSLLNGYCHGKRISDAV-- 175

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL+   V++G+  D I    L+   +    A     L+DRM++                 
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR---------------- 219

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  + V+++ LCK G I  A  + ++     + A  V ++T+I+  CK ++ D+ 
Sbjct: 220 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 279

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L + ME  G+RP+V TYS+LI+ LC   R  DA  LL +M ER + PN V F  LID 
Sbjct: 280 LNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDA 339

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++PD  TY+ L++GFC    L+ A  + + MI 
Sbjct: 340 FVKEGK------LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 393

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    + V +  LI+GFC+  ++ E   + REM + GL  +  TYT +I  F +  D   
Sbjct: 394 KDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 453

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + K+M SDG  P + TYN L++GLCK+G+L+ A ++ + +    + P   TYNI++E
Sbjct: 454 AQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 513

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  D   Y +++S
Sbjct: 514 GMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 192/357 (53%), Gaps = 12/357 (3%)

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           I +M + +L  ++LG  ++ L  G S ++Y +N+L++  C+  +I  A  +  +  K G 
Sbjct: 95  IAKMKKFDL-VISLGEKMQRL--GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGY 151

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
             + V+ ++L+NG+C  K + +   L   M   G RPD  T++ LI+GL   N+  +A  
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L+  M +RG  PN V +  +++G CK G ID+A ++      +++M    +  + + Y+ 
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL------LNKMEAAKIEANVVIYST 265

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++D  CK    + AL++  EM  +G+  + + +++LIS  C   +  +A R+L +M++  
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  T+  +ID F K G      +L  EM      P + TY++L+NG C H +L  A 
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 385

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            + + M+     P+ +TYN L+ G CK    ++  +L    S++GLV +   YT+L+
Sbjct: 386 HMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 196/415 (47%), Gaps = 23/415 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           +R     ++T++H L  H   S+A  L+  +V +   G   +L             G+V+
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR---GCQPNLVTY----------GVVV 232

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + L       G +D A      +              +ID + +       L  + E+ +
Sbjct: 233 NGL----CKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P+V  ++ L+  LC   +  DA  +  +  +R ++   V+FN LI+   K   L E
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE 348

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +L   M    + PD++TYS+LING C  +RLD+A+ +   M  +   PN V + TLI+
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIN 408

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK  RID      E  ++  EM   GL  + +TYT L+ GF +  D ++A  + K+M+
Sbjct: 409 GFCKAKRID------EGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G+  + + +  L+ G C+ GK+ +A  +   + +  ++P   TY ++I+  CK G  +
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 522

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G+ L   +   G  P V  YN +++G C+ G  + A+ L   M + G +PD  T
Sbjct: 523 DGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 159/315 (50%), Gaps = 9/315 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA  +F    K     +   FN L++   K K  D    L   M+  G+  ++YTY+
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LIN  C+ +++  A  LL +M + G  P+ V  ++L++G+C   RI       +A  +V
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI------SDAVALV 178

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D+M   G  PD IT+T L+ G         A+ +   M++RG + + V +  +++G C+ 
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G +  A  +L +M    ++ +   Y+ VID  CK         L  EM + G  P V TY
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           ++L++ LC + +  +A+ LL  M++  + P+ +T+N L++   K G   + +KL  E   
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIK 358

Query: 441 KGLVSDYACYTSLVS 455
           + +  D   Y+SL++
Sbjct: 359 RSIDPDIFTYSSLIN 373



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 10/261 (3%)

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           L NGL    +LDDA  L   M +    P+   F  L+    K  + D+   + E      
Sbjct: 57  LRNGL-HSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGE------ 109

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G++ +  TY IL++ FC+   +  AL +  +M+K G E   V  ++L++G+C G 
Sbjct: 110 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++ +A  ++ +M+++G +PD  T+T +I     +        L+  M   G  P + TY 
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
            ++NGLCK G +  A  LL+ M    +  + + Y+ +++  CK+ + +D   L +E   K
Sbjct: 230 VVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289

Query: 442 GLVSDYACYTSLVSKSSKYRQ 462
           G+  +   Y+SL+S    Y +
Sbjct: 290 GVRPNVITYSSLISCLCNYER 310


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 234/497 (47%), Gaps = 37/497 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           PH+  +LH+  +M+H L  H+    A+ +L  +  ++ + S + L + +       +   
Sbjct: 72  PHYTHSLHSSWSMIHMLTKHRHFKTAQQVLDKMAQREILSSPSVLTSLVRIHDDPEVNSH 131

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           VL  ++I Y       DA+Q F  +     +     C  L++ +++  + ++    Y  +
Sbjct: 132 VLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRM 191

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +  G  P++YV+N L+H   K   ++ A+ + +E   +G+     ++NTLI  +CK    
Sbjct: 192 VQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLH 251

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   ++  ME  G+  D+ +Y++LI G CKE ++ +A  +  E+  +   PN V +TTL
Sbjct: 252 YEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEI--KDAIPNHVTYTTL 309

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           IDG+CK    + A                             G +++A K++ EM    +
Sbjct: 310 IDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKV 369

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             D +T   L++ +CK GDL SAL  + +M++ G+  ++  + ALI GFC+  ++  A+ 
Sbjct: 370 QADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKE 429

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L  ML  G  P+  TY+ ++D +CK  +T     L  E  S G    +  Y AL+  LC
Sbjct: 430 LLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLC 489

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKG------LVS 445
           K  +++ A  LL  M   G+  D + Y  L   + K GN      +  E         V 
Sbjct: 490 KIERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEMARRRLMITVK 549

Query: 446 DYACYTSLVSKSSKYRQ 462
            Y C+++L +  +K  Q
Sbjct: 550 IYRCFSALDASQNKVSQ 566


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 216/416 (51%), Gaps = 9/416 (2%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDALMIVYVDLG 73
           H LV  +M+  AR +L  +    G   S+ +F +++ T R  +    V D L+ VY+  G
Sbjct: 80  HILVRARMYDPARHILKELSLMSG--KSSFVFGALMTTYRLCNSNPSVYDILIRVYLREG 137

Query: 74  FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
            + D+++ FRL+  + F      C  ++  ++++        F  E+L     P V  FN
Sbjct: 138 MIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFN 197

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++ LC EG  + +  +  +  K G   T V++NT+++ +CK         L   M+  
Sbjct: 198 ILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSK 257

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+  DV TY+ LI+ LC+ NR+    LLL +M +R + PN+V + TLI+G    G++ +A
Sbjct: 258 GVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIA 317

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
                  ++++EM + GL+P+ +T+  L+DG   EG+ + AL +   M  +G+    V++
Sbjct: 318 S------QLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             L+ G C+  +   A      M + G+     TYT +ID  CKNG       LL EM  
Sbjct: 372 GVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 431

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           DG  P + TY+AL+NG CK G+ K A  ++  +  +G+ P+ I Y+ L+   C+ G
Sbjct: 432 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMG 487



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L +G SP+   FN L+     EG  K+A  +F     +GL  + VS+  L++G CK  
Sbjct: 323 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 382

Query: 179 NLD--EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             D   GF ++  M+ +G+     TY+ +I+GLCK   LD+A +LL+EM + G+ P+ V 
Sbjct: 383 EFDLARGFYMR--MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVT 440

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++ LI+G CK GR       K A++IV  +   GL+P+ I Y+ L+   C+ G L+ A+ 
Sbjct: 441 YSALINGFCKVGRF------KTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIR 494

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I + MI  G   D+  F  L++  C+ GKV EAE  +R M   G+ P+  ++  +I+ + 
Sbjct: 495 IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYG 554

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            +G+    F +  EM   GH P   TY +L+ GLCK G L+ A   L ++  +    D +
Sbjct: 555 NSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV 614

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            YN LL   CK GN      L  E   + ++ D   YTSL+S
Sbjct: 615 MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLIS 656



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 168/369 (45%), Gaps = 14/369 (3%)

Query: 82  FRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           F L R  Y R+   G          +ID + +       +    E+   G  P +  ++ 
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++  CK G+ K A+ +     + GL    + ++TLI   C+   L E  R+   M   G
Sbjct: 444 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              D +T++ L+  LCK  ++ +AE  +  M   G+ PN V F  LI+G+        +G
Sbjct: 504 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGN------SG 557

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           +  +A  + DEM   G +P   TY  LL G CK G L  A    K +      +D V + 
Sbjct: 558 EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYN 617

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L++  C+ G + +A  +  EM++  + PD  TYT +I   C+ G T       KE  + 
Sbjct: 618 TLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEAR 677

Query: 375 GH-LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           G+ LP    Y   ++G+ K GQ K      + M +LG  PD +T N +++G+ + G  E 
Sbjct: 678 GNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEK 737

Query: 434 FDKLQSEKG 442
            + L  E G
Sbjct: 738 TNDLLPEMG 746



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 167/355 (47%), Gaps = 29/355 (8%)

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            C +D M +       + F  ++ + G++P +   N ++    + GKI+    +  E G +
Sbjct: 689  CFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQ 748

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                   ++N L++G+ K K++   F L   +  +G+ PD  T  +L+ G+C+ N L+  
Sbjct: 749  NGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIG 808

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
              +L     RG+  +   F  LI   C NG I+ A D+                      
Sbjct: 809  LKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSV 868

Query: 257  -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +E+R ++ EM   G++P+   Y  L++G C+ GD+++A  +++EMI   I   
Sbjct: 869  LNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPP 928

Query: 310  NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            NVA +A++    + GK  EA  +LR MLK+ L P  A++T ++   CKNG+      L  
Sbjct: 929  NVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRV 988

Query: 370  EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             M + G    + +YN L+ GLC  G +  A  L + M   G + +  TY  L+ G
Sbjct: 989  VMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 173/395 (43%), Gaps = 45/395 (11%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            L+  M ++      +  + E++     P  Y +  L+  LC++GK   A +   E   RG
Sbjct: 619  LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 160  -LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
             +    V +   ++G  KA     G   +  M+  G  PD+ T +A+I+G  +  +++  
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKT 738

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
              LL EM  +   PN   +  L+ G+ K  R D++      R I+     NG+ PDK+T 
Sbjct: 739  NDLLPEMGNQNGGPNLTTYNILLHGYSK--RKDVSTSFLLYRSII----LNGILPDKLTC 792

Query: 279  TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV------------ 326
              L+ G C+   LE  L I K  I RG+E+D   F  LIS  C  G++            
Sbjct: 793  HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852

Query: 327  -----------------------VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                                    E+  +L EM K G+ P+   Y  +I+  C+ GD KT
Sbjct: 853  LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 912

Query: 364  GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             F + +EM +    P     +A++  L K G+   A +LL  ML + +VP   ++  L+ 
Sbjct: 913  AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMH 972

Query: 424  GHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
              CK+GN  +  +L+   S  GL  D   Y  L++
Sbjct: 973  LCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLIT 1007



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 11/261 (4%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P VY    LI    +E  + D+  +   M   G  P+      ++      G +  +G+ 
Sbjct: 123 PSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL------GSVVKSGED 174

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                 + EM    + PD  T+ IL++  C EG  E +  + ++M K G     V +  +
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +  +C+ G+   A  +L  M   G+  D  TY M+I   C++     G+ LL++MR    
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMI 294

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P   TYN L+NG    G++  A+ LL+ ML  G+ P+ +T+N L++GH   GN ++  K
Sbjct: 295 HPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALK 354

Query: 437 ---LQSEKGLVSDYACYTSLV 454
              +   KGL      Y  L+
Sbjct: 355 MFYMMEAKGLTPSEVSYGVLL 375


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 181/335 (54%), Gaps = 9/335 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G + +VY  N+L++ LC+   +  A  V  +  K G+   A++FNTLING C    + E
Sbjct: 121 FGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKE 180

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + M   G +PDV +YS +INGLCK      A  LL +M E+G  PN V +TT+ID
Sbjct: 181 AVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIID 240

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CK+  ++ A D+      + EM   G+ PD +TY+ +L GFC  G L  A  +  EM+
Sbjct: 241 SLCKDTLVNDAMDL------LSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMV 294

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            R +  + V FT L+ G C+ G V EA  +   M K G +P+  TY  ++D +C N    
Sbjct: 295 GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMD 354

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              ++L  M   G  P V +YN L+NG CK  +L  A  LL  M +  + PD +TY+ L+
Sbjct: 355 EAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLM 414

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +G C+ G P++   L  E    GL+ D   Y++L+
Sbjct: 415 QGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLL 449



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 195/358 (54%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + R N     +    ++   G  P    FN L++  C EG+IK+A  +F+E  +RG
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +S++T+ING CK+ N     +L   ME  G +P++  Y+ +I+ LCK+  ++DA 
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAM 252

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM +RG+ P+ V ++T++ G C  G ++      EA  + +EM    + P+ +T+T
Sbjct: 253 DLLSEMVDRGIPPDVVTYSTILHGFCSLGHLN------EATILFNEMVGRNVMPNTVTFT 306

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+DG CKEG +  A  + + M K+G E +   + AL+ G+C   ++ EA+++L  M+  
Sbjct: 307 ILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDK 366

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P   +Y ++I+ +CK         LL EM      P   TY+ LM GLC+ G+ + A
Sbjct: 367 GCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEA 426

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             L   M   G++PD +TY+ LL+G CKHG+ ++  KL     E  +  D   Y  L+
Sbjct: 427 LNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILI 484



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 6/305 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P+   F +L+  LCKEG + +A+ VF+   K+G    A ++N L++G+C   
Sbjct: 292 EMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNN 351

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++  +M   G  P V++Y+ LING CK  RLD+A+ LL EM E+ LTP+ V ++
Sbjct: 352 QMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYS 411

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C+ GR       +EA  +  EMC++GL PD +TY+ LLDG CK G L+ AL + 
Sbjct: 412 TLMQGLCQVGRP------QEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLL 465

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M +  IE D V +  LI G    GK+  A+ +  ++   G++P   TYT++I    K 
Sbjct: 466 KSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKE 525

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G +   + L ++M  DG LP   +YN ++ G  ++     A  L+D M+      D  T+
Sbjct: 526 GLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTF 585

Query: 419 NILLE 423
            +LL+
Sbjct: 586 QMLLD 590



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 199/388 (51%), Gaps = 20/388 (5%)

Query: 82  FRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
            +LLRK    +  +GC+        +ID + +  L    +    E++D G  P V  ++ 
Sbjct: 217 LQLLRK----MEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYST 272

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++H  C  G + +A ++F+E   R +    V+F  L++G CK   + E   +   M   G
Sbjct: 273 ILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKG 332

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             P+ YTY+AL++G C  N++D+A+ +L  M ++G  P    +  LI+G+CK  R+D   
Sbjct: 333 AEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLD--- 389

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA+ ++ EM    L PD +TY+ L+ G C+ G  + AL++ KEM   G+  D + ++
Sbjct: 390 ---EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYS 446

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L+ G C+ G + EA ++L+ M +  ++PD   Y ++I+     G  +    L  ++ +D
Sbjct: 447 TLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFAD 506

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P + TY  ++ GL K G    A  L   M D G +P+  +YN++++G  ++ +    
Sbjct: 507 GIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTA 566

Query: 435 DKLQSE---KGLVSDYACYTSLVSKSSK 459
            +L  E   K   +D + +  L+   S+
Sbjct: 567 IRLIDEMVGKRFSADSSTFQMLLDLESR 594



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 175/345 (50%), Gaps = 9/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  +L     PSV  F   +  + K+ +      + ++    G+     S N LIN
Sbjct: 76  ALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILIN 135

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C+  ++     +   M   G++PD  T++ LING C E  + +A  L +EM  RG  P
Sbjct: 136 CLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQP 195

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + ++T+I+G CK+G   M      A +++ +M   G  P+ + YT ++D  CK+  + 
Sbjct: 196 DVISYSTVINGLCKSGNTSM------ALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVN 249

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+D+  EM+ RGI  D V ++ ++ GFC  G + EA  +  EM+   + P+  T+T+++
Sbjct: 250 DAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILV 309

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D  CK G       + + M   G  P   TYNALM+G C + Q+  A  +LD M+D G  
Sbjct: 310 DGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCA 369

Query: 413 PDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           P   +YNIL+ G+CK    ++   L    SEK L  D   Y++L+
Sbjct: 370 PVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLM 414



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 9/243 (3%)

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +DDA    + M      P+ V F   +      G I           + ++M   G+  +
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFL------GSIAKKKQYSTVVSLCNQMDLFGVTHN 126

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             +  IL++  C+   +  A+ +  +M K GI+ D + F  LI+G C  G++ EA  +  
Sbjct: 127 VYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFN 186

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM++ G +PD  +Y+ VI+  CK+G+T    +LL++M   G  P +  Y  +++ LCK  
Sbjct: 187 EMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDT 246

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            + +A  LL  M+D G+ PD +TY+ +L G C  G+  +   L +E   + ++ +   +T
Sbjct: 247 LVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFT 306

Query: 452 SLV 454
            LV
Sbjct: 307 ILV 309


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 216/416 (51%), Gaps = 9/416 (2%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDALMIVYVDLG 73
           H LV  +M+  AR +L  +    G   S+ +F +++ T R  +    V D L+ VY+  G
Sbjct: 80  HILVRARMYDPARHILKELSLMSG--KSSFVFGALMTTYRLCNSNPSVYDILIRVYLREG 137

Query: 74  FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
            + D+++ FRL+  + F      C  ++  ++++        F  E+L     P V  FN
Sbjct: 138 MIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFN 197

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++ LC EG  + +  +  +  K G   T V++NT+++ +CK         L   M+  
Sbjct: 198 ILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSK 257

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+  DV TY+ LI+ LC+ NR+    LLL +M +R + PN+V + TLI+G    G++ +A
Sbjct: 258 GVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIA 317

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
                  ++++EM + GL+P+ +T+  L+DG   EG+ + AL +   M  +G+    V++
Sbjct: 318 S------QLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             L+ G C+  +   A      M + G+     TYT +ID  CKNG       LL EM  
Sbjct: 372 GVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 431

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           DG  P + TY+AL+NG CK G+ K A  ++  +  +G+ P+ I Y+ L+   C+ G
Sbjct: 432 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMG 487



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L +G SP+   FN L+     EG  K+A  +F     +GL  + VS+  L++G CK  
Sbjct: 323 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 382

Query: 179 NLD--EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             D   GF ++  M+ +G+     TY+ +I+GLCK   LD+A +LL+EM + G+ P+ V 
Sbjct: 383 EFDLARGFYMR--MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVT 440

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++ LI+G CK GR       K A++IV  +   GL+P+ I Y+ L+   C+ G L+ A+ 
Sbjct: 441 YSALINGFCKVGRF------KTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIR 494

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I + MI  G   D+  F  L++  C+ GKV EAE  +R M   G+ P+  ++  +I+ + 
Sbjct: 495 IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYG 554

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            +G+    F +  EM   GH P   TY +L+ GLCK G L+ A   L ++  +    D +
Sbjct: 555 NSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV 614

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            YN LL   CK GN      L  E   + ++ D   YTSL+S
Sbjct: 615 MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLIS 656



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 168/369 (45%), Gaps = 14/369 (3%)

Query: 82  FRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           F L R  Y R+   G          +ID + +       +    E+   G  P +  ++ 
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++  CK G+ K A+ +     + GL    + ++TLI   C+   L E  R+   M   G
Sbjct: 444 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              D +T++ L+  LCK  ++ +AE  +  M   G+ PN V F  LI+G+        +G
Sbjct: 504 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGN------SG 557

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           +  +A  + DEM   G +P   TY  LL G CK G L  A    K +      +D V + 
Sbjct: 558 EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYN 617

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L++  C+ G + +A  +  EM++  + PD  TYT +I   C+ G T       KE  + 
Sbjct: 618 TLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEAR 677

Query: 375 GH-LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           G+ LP    Y   ++G+ K GQ K      + M +LG  PD +T N +++G+ + G  E 
Sbjct: 678 GNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEK 737

Query: 434 FDKLQSEKG 442
            + L  E G
Sbjct: 738 TNDLLPEMG 746



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 167/355 (47%), Gaps = 29/355 (8%)

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            C +D M +       + F  ++ + G++P +   N ++    + GKI+    +  E G +
Sbjct: 689  CFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQ 748

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                   ++N L++G+ K K++   F L   +  +G+ PD  T  +L+ G+C+ N L+  
Sbjct: 749  NGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIG 808

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
              +L     RG+  +   F  LI   C NG I+ A D+                      
Sbjct: 809  LKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSV 868

Query: 257  -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +E+R ++ EM   G++P+   Y  L++G C+ GD+++A  +++EMI   I   
Sbjct: 869  LNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPP 928

Query: 310  NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            NVA +A++    + GK  EA  +LR MLK+ L P  A++T ++   CKNG+      L  
Sbjct: 929  NVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRV 988

Query: 370  EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             M + G    + +YN L+ GLC  G +  A  L + M   G + +  TY  L+ G
Sbjct: 989  VMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 173/395 (43%), Gaps = 45/395 (11%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            L+  M ++      +  + E++     P  Y +  L+  LC++GK   A +   E   RG
Sbjct: 619  LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 160  -LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
             +    V +   ++G  KA     G   +  M+  G  PD+ T +A+I+G  +  +++  
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKT 738

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
              LL EM  +   PN   +  L+ G+ K  R D++      R I+     NG+ PDK+T 
Sbjct: 739  NDLLPEMGNQNGGPNLTTYNILLHGYSK--RKDVSTSFLLYRSII----LNGILPDKLTC 792

Query: 279  TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV------------ 326
              L+ G C+   LE  L I K  I RG+E+D   F  LIS  C  G++            
Sbjct: 793  HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852

Query: 327  -----------------------VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                                    E+  +L EM K G+ P+   Y  +I+  C+ GD KT
Sbjct: 853  LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 912

Query: 364  GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             F + +EM +    P     +A++  L K G+   A +LL  ML + +VP   ++  L+ 
Sbjct: 913  AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMH 972

Query: 424  GHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
              CK+GN  +  +L+   S  GL  D   Y  L++
Sbjct: 973  LCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLIT 1007



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 11/261 (4%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P VY    LI    +E  + D+  +   M   G  P+      ++      G +  +G+ 
Sbjct: 123 PSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL------GSVVKSGED 174

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                 + EM    + PD  T+ IL++  C EG  E +  + ++M K G     V +  +
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +  +C+ G+   A  +L  M   G+  D  TY M+I   C++     G+ LL++MR    
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMI 294

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P   TYN L+NG    G++  A+ LL+ ML  G+ P+ +T+N L++GH   GN ++  K
Sbjct: 295 HPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALK 354

Query: 437 ---LQSEKGLVSDYACYTSLV 454
              +   KGL      Y  L+
Sbjct: 355 MFYMMEAKGLTPSEVSYGVLL 375


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 182/342 (53%), Gaps = 35/342 (10%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S  VF++L      EGK+K A+         G     VS+NT+I+G+    N++   R+ 
Sbjct: 178 SSIVFDLL------EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRIL 231

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+ PD YTY +LI+G+CKE RL++A  L  +M E GL PN V + TLIDG+C  
Sbjct: 232 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNK 291

Query: 248 GRID-----------------------------MAGDMKEARKIVDEMCTNGLNPDKITY 278
           G ++                             M G M EA  ++ EM   G+ PD ITY
Sbjct: 292 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITY 351

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            IL++G+ + G+ + A D+  EM+ +GIE  +V +T+LI    R  ++ EA+ +  ++L 
Sbjct: 352 NILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD 411

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G+ PD   +  +ID  C NG+ +  F LLKEM      P   T+N LM G C+ G+++ 
Sbjct: 412 QGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEE 471

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           A MLLD M   G+ PD I+YN L+ G+ + G+ +D   ++ E
Sbjct: 472 ARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDE 513



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 178/330 (53%), Gaps = 29/330 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y +  L+  +CKEG++++A  +FD+  + GL   AV++NTLI+G+C   +L+  
Sbjct: 238 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 297

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  +  M   G+ P V TY+ L++ L  E R+ +A+ ++ EM ++G+ P+ + +  LI+G
Sbjct: 298 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 357

Query: 244 HCKNGRIDMAGD-----------------------------MKEARKIVDEMCTNGLNPD 274
           + + G    A D                             MKEA  + +++   G++PD
Sbjct: 358 YSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 417

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            I +  ++DG C  G++E A  + KEM ++ +  D V F  L+ G CR GKV EA  +L 
Sbjct: 418 VIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLD 477

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM   G+KPD  +Y  +I  + + GD K  F +  EM S G  P + TYNAL+  LCK+ 
Sbjct: 478 EMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQ 537

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +   A  LL  M++ G+ PDD TY  L+EG
Sbjct: 538 EGDLAEELLKEMVNKGISPDDSTYLSLIEG 567



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 157/272 (57%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  PSV  +N+L+H L  EG++ +A  +  E  K+G+   A+++N LING+ +  
Sbjct: 303 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 362

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N    F L + M   G+ P   TY++LI  L + NR+ +A+ L  ++ ++G++P+ ++F 
Sbjct: 363 NAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 422

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDGHC NG ++       A  ++ EM    + PD++T+  L+ G C+EG +E A  + 
Sbjct: 423 AMIDGHCANGNVE------RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 476

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  RGI+ D++++  LISG+ R G + +A  +  EML +G  P   TY  +I C CKN
Sbjct: 477 DEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKN 536

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +      LLKEM + G  P   TY +L+ G+
Sbjct: 537 QEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           + G +K+AR+ +  M   G  P+ ++Y  ++ G+   G++E A  I   M  +GIE D+ 
Sbjct: 185 LEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 244

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            + +LISG C+ G++ EA  +  +M+++GL P+  TY  +ID +C  GD +  F    EM
Sbjct: 245 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 304

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G +P+V TYN L++ L   G++  A+ ++  M   G++PD ITYNIL+ G+ + GN 
Sbjct: 305 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNA 364

Query: 432 EDFDKLQSE---KGLVSDYACYTSLV 454
           +    L +E   KG+   +  YTSL+
Sbjct: 365 KRAFDLHNEMLSKGIEPTHVTYTSLI 390


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 217/439 (49%), Gaps = 11/439 (2%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS--KKGMGSSASLFASILETRGTHLPGL 60
            R +   Y  +VH L   +  SQA   L  +V   K  +         IL T   +   +
Sbjct: 175 LRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDLPGEDVFKNLILCTEDCNWDPV 234

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V D L+  Y+ +G + + ++ FR + +  F         L++ +++ N        Y E+
Sbjct: 235 VFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEM 294

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
             +G +P++Y FN+L H LCK+G         ++  + G     V++NTLIN +C+   L
Sbjct: 295 ERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRL 354

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+ F L  +M   G+ PD+ +Y+AL+NGLCKE R+ +A  L H M  RGL+P+ V + TL
Sbjct: 355 DDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 414

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G+CK G+      M+E+R ++ +M  NG++PD  T  +L++G+ KEG   SAL++  E
Sbjct: 415 IHGYCKEGK------MQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVE 468

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           + + G+ +    ++ LI   CR  +   A+ +L  M + G K +   Y  +I  FC+   
Sbjct: 469 LQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDC 528

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 L  EM      P + TY A++  L +  +      L+  M+  G +PD      
Sbjct: 529 IAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRA 588

Query: 421 LLEGHCKHGNPEDFDKLQS 439
           L  G+C+     D DK +S
Sbjct: 589 LFYGYCREN---DIDKAES 604



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 112/287 (39%), Gaps = 25/287 (8%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++H         ++R LLH ++     G S   F   +   G    G  L AL +V
Sbjct: 410 TYNTLIHGYCKEGKMQESRSLLHDMIWN---GISPDSFTCWVLVEGYGKEGKFLSALNLV 466

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                           L++    I       LI  + R N P         +   G+   
Sbjct: 467 VE--------------LQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXE 512

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           + ++N L+   C+   I +A ++  E   + +     ++  +J    +     EG  L  
Sbjct: 513 LEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVG 572

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  SG  PD+    AL  G C+EN +D AE LL    +     +   F  LI       
Sbjct: 573 EMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALI------- 625

Query: 249 RIDMA-GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           RI  A GD+  + +I D M   GL P+ +T   ++DG  K   ++SA
Sbjct: 626 RITSAKGDIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSA 672



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 45/103 (43%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P + +   L +  C+E  I  A+ +     K        SFN LI       
Sbjct: 573 EMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKG 632

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           ++     ++ +M   G+ P+  T   +I+GL K  R+D A L+
Sbjct: 633 DIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSASLM 675


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 216/416 (51%), Gaps = 9/416 (2%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDALMIVYVDLG 73
           H LV  +M+  AR +L  +    G   S+ +F +++ T R  +    V D L+ VY+  G
Sbjct: 120 HILVRARMYDPARHILKELSLMSG--KSSFVFGALMTTYRLCNSNPSVYDILIRVYLREG 177

Query: 74  FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
            + D+++ FRL+  + F      C  ++  ++++        F  E+L     P V  FN
Sbjct: 178 MIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFN 237

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++ LC EG  + +  +  +  K G   T V++NT+++ +CK         L   M+  
Sbjct: 238 ILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSK 297

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+  DV TY+ LI+ LC+ NR+    LLL +M +R + PN+V + TLI+G    G++ +A
Sbjct: 298 GVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIA 357

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
                  ++++EM + GL+P+ +T+  L+DG   EG+ + AL +   M  +G+    V++
Sbjct: 358 S------QLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 411

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             L+ G C+  +   A      M + G+     TYT +ID  CKNG       LL EM  
Sbjct: 412 GVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 471

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           DG  P + TY+AL+NG CK G+ K A  ++  +  +G+ P+ I Y+ L+   C+ G
Sbjct: 472 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMG 527



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L +G SP+   FN L+     EG  K+A  +F     +GL  + VS+  L++G CK  
Sbjct: 363 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 422

Query: 179 NLD--EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             D   GF ++  M+ +G+     TY+ +I+GLCK   LD+A +LL+EM + G+ P+ V 
Sbjct: 423 EFDLARGFYMR--MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVT 480

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++ LI+G CK GR       K A++IV  +   GL+P+ I Y+ L+   C+ G L+ A+ 
Sbjct: 481 YSALINGFCKVGRF------KTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIR 534

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I + MI  G   D+  F  L++  C+ GKV EAE  +R M   G+ P+  ++  +I+ + 
Sbjct: 535 IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYG 594

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            +G+    F +  EM   GH P   TY +L+ GLCK G L+ A   L ++  +    D +
Sbjct: 595 NSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV 654

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            YN LL   CK GN      L  E   + ++ D   YTSL+S
Sbjct: 655 MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLIS 696



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 168/369 (45%), Gaps = 14/369 (3%)

Query: 82  FRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           F L R  Y R+   G          +ID + +       +    E+   G  P +  ++ 
Sbjct: 424 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 483

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++  CK G+ K A+ +     + GL    + ++TLI   C+   L E  R+   M   G
Sbjct: 484 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 543

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              D +T++ L+  LCK  ++ +AE  +  M   G+ PN V F  LI+G+        +G
Sbjct: 544 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGN------SG 597

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           +  +A  + DEM   G +P   TY  LL G CK G L  A    K +      +D V + 
Sbjct: 598 EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYN 657

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L++  C+ G + +A  +  EM++  + PD  TYT +I   C+ G T       KE  + 
Sbjct: 658 TLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEAR 717

Query: 375 GH-LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           G+ LP    Y   ++G+ K GQ K      + M +LG  PD +T N +++G+ + G  E 
Sbjct: 718 GNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEK 777

Query: 434 FDKLQSEKG 442
            + L  E G
Sbjct: 778 TNDLLPEMG 786



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 167/355 (47%), Gaps = 29/355 (8%)

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            C +D M +       + F  ++ + G++P +   N ++    + GKI+    +  E G +
Sbjct: 729  CFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQ 788

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                   ++N L++G+ K K++   F L   +  +G+ PD  T  +L+ G+C+ N L+  
Sbjct: 789  NGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIG 848

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
              +L     RG+  +   F  LI   C NG I+ A D+                      
Sbjct: 849  LKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSV 908

Query: 257  -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +E+R ++ EM   G++P+   Y  L++G C+ GD+++A  +++EMI   I   
Sbjct: 909  LNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPP 968

Query: 310  NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            NVA +A++    + GK  EA  +LR MLK+ L P  A++T ++   CKNG+      L  
Sbjct: 969  NVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRV 1028

Query: 370  EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             M + G    + +YN L+ GLC  G +  A  L + M   G + +  TY  L+ G
Sbjct: 1029 VMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1083



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 173/395 (43%), Gaps = 45/395 (11%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            L+  M ++      +  + E++     P  Y +  L+  LC++GK   A +   E   RG
Sbjct: 659  LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 718

Query: 160  -LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
             +    V +   ++G  KA     G   +  M+  G  PD+ T +A+I+G  +  +++  
Sbjct: 719  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKT 778

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
              LL EM  +   PN   +  L+ G+ K  R D++      R I+     NG+ PDK+T 
Sbjct: 779  NDLLPEMGNQNGGPNLTTYNILLHGYSK--RKDVSTSFLLYRSII----LNGILPDKLTC 832

Query: 279  TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV------------ 326
              L+ G C+   LE  L I K  I RG+E+D   F  LIS  C  G++            
Sbjct: 833  HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 892

Query: 327  -----------------------VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                                    E+  +L EM K G+ P+   Y  +I+  C+ GD KT
Sbjct: 893  LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 952

Query: 364  GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             F + +EM +    P     +A++  L K G+   A +LL  ML + +VP   ++  L+ 
Sbjct: 953  AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMH 1012

Query: 424  GHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
              CK+GN  +  +L+   S  GL  D   Y  L++
Sbjct: 1013 LCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLIT 1047



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 11/261 (4%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P VY    LI    +E  + D+  +   M   G  P+      ++      G +  +G+ 
Sbjct: 163 PSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL------GSVVKSGED 214

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                 + EM    + PD  T+ IL++  C EG  E +  + ++M K G     V +  +
Sbjct: 215 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 274

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +  +C+ G+   A  +L  M   G+  D  TY M+I   C++     G+ LL++MR    
Sbjct: 275 LHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMI 334

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P   TYN L+NG    G++  A+ LL+ ML  G+ P+ +T+N L++GH   GN ++  K
Sbjct: 335 HPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALK 394

Query: 437 ---LQSEKGLVSDYACYTSLV 454
              +   KGL      Y  L+
Sbjct: 395 MFYMMEAKGLTPSEVSYGVLL 415


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 192/367 (52%), Gaps = 36/367 (9%)

Query: 91  RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++  +GC+        +ID + +  L T  + F+ E++  G  P V+ ++ ++H  C  G
Sbjct: 70  KMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLG 129

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++ +A  +F +  +R +    V+F  LI+G CK + + E + +   M   G+ PDVYTY+
Sbjct: 130 RVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYN 189

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
           AL++G C  +++D+A+ L + M  +G  PN   +  LI+GHCK+GRID A          
Sbjct: 190 ALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHK 249

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              G  +EA++++ EMC+ GL P+ ITY+I+LDG CK G L+ A
Sbjct: 250 SLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEA 309

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            ++ K M +  IE +   +T LI G C  GK+  A  +   +   G++P   TYT++I  
Sbjct: 310 FELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISG 369

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             K G +     L +EM  +G LP   TYN ++ G  ++G   NA  L++ M+  G   D
Sbjct: 370 LLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSAD 429

Query: 415 DITYNIL 421
             T+ +L
Sbjct: 430 SSTFRML 436



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 183/340 (53%), Gaps = 9/340 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P V  ++ +++ LCK G    A  +  +  ++G     V++NT+I+  CK +
Sbjct: 35  EMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDR 94

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E     S M   G+ PDV+TYS++++G C   R+++A  L  +M ER + PN V FT
Sbjct: 95  LVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFT 154

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDG CK   I       EA  + + M   GL PD  TY  L+DG+C    ++ A  + 
Sbjct: 155 ILIDGLCKKRMIS------EAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLF 208

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M ++G   +  ++  LI+G C+ G++ EA+ +L EM    L PD  TY+ ++  FC+ 
Sbjct: 209 NIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQV 268

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLKEM S G LP + TY+ +++GLCKHG L  A  LL  M +  + P+   Y
Sbjct: 269 GRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIY 328

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            IL+EG C  G  E   +L S    KG+      YT ++S
Sbjct: 329 TILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMIS 368



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 186/334 (55%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  FN L+  LC + KI DA  +FDE  K G     ++++T+ING CK  N    
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   ME  G +P+V  Y+ +I+ LCK+  + +A     EM + G+ P+   +++++ G
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C  GR++      EA  +  +M    + P+K+T+TIL+DG CK+  +  A  + + M +
Sbjct: 125 FCNLGRVN------EATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+E D   + AL+ G+C   ++ EA+++   M + G  P+  +Y ++I+  CK+G    
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL EM      P + TY+ LM G C+ G+ + A  LL  M   G++P+ ITY+I+L+
Sbjct: 239 AKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLD 298

Query: 424 GHCKHGN-PEDFDKLQS--EKGLVSDYACYTSLV 454
           G CKHG+  E F+ L++  E  +  +   YT L+
Sbjct: 299 GLCKHGHLDEAFELLKAMQESKIEPNIFIYTILI 332



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 153/298 (51%), Gaps = 9/298 (3%)

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K GL  T V+FNTL++G C    + +  +L   M   G  PDV TYS +INGLCK     
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTT 62

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  LL +M E+G  PN V + T+ID  CK+  +       EA     EM   G+ PD  
Sbjct: 63  MALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLV------TEAMDFFSEMVKEGIPPDVF 116

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY+ +L GFC  G +  A  + K+M++R +  + V FT LI G C+   + EA  +   M
Sbjct: 117 TYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETM 176

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + GL+PD  TY  ++D +C         +L   M   G  P V +YN L+NG CK G++
Sbjct: 177 TEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRI 236

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYT 451
             A  LL  M    + PD  TY+ L+ G C+ G P++  +L  E    GL+ +   Y+
Sbjct: 237 DEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYS 294



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 175/374 (46%), Gaps = 46/374 (12%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           AY+T++  L   ++ ++A D    +V K+G+      ++SIL                  
Sbjct: 82  AYNTIIDSLCKDRLVTEAMDFFSEMV-KEGIPPDVFTYSSILHG---------------- 124

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           + +LG +++A   F+ + +            LID + +  + +     +  + + G  P 
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           VY +N L+   C   ++ +AQ +F+   ++G      S+N LINGHCK+  +DE   L +
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLA 244

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PD++TYS L+ G C+  R  +A+ LL EMC  GL PN + ++ ++DG CK+G
Sbjct: 245 EMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHG 304

Query: 249 RIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYT 279
            +D A                             G ++ AR++   +   G+ P  +TYT
Sbjct: 305 HLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYT 364

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +++ G  K G    A ++ +EM   G   ++  +  +I GF R G    A R++ EM+  
Sbjct: 365 VMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGK 424

Query: 340 GLKPDDATYTMVID 353
           G   D +T+ M+ D
Sbjct: 425 GFSADSSTFRMLSD 438



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M + GL P  V F TL+ G C   +I       +A K+ DEM   G  PD ITY+ +++G
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKI------MDAVKLFDEMVKMGHEPDVITYSTIING 54

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK G+   AL + K+M ++G + + VA+  +I   C+   V EA     EM+K G+ PD
Sbjct: 55  LCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPD 114

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY+ ++  FC  G       L K+M     +P   T+  L++GLCK   +  A ++ +
Sbjct: 115 VFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFE 174

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           TM + G+ PD  TYN L++G+C     ++  KL      KG   +   Y  L++
Sbjct: 175 TMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILIN 228



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M K G++   V F  L+SG C   K+++A ++  EM+K+G +PD  TY+ +I+  CK G+
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
           T    +LLK+M   G  P V  YN +++ LCK   +  A      M+  G+ PD  TY+ 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 421 LLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYR 461
           +L G C  G   +   L     E+ ++ +   +T L+    K R
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKR 164


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 214/413 (51%), Gaps = 16/413 (3%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           L+T+ T    ++ D ++  Y  L  +D+AI+CF L+++  F      C  ++  + R N 
Sbjct: 151 LQTKST----ILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNR 206

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                 FY ++       +VY FN++++ LCKEGK+K A+         G+  T V++NT
Sbjct: 207 IENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNT 266

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G+     ++    + S M+  G +PD+ TY+ +++ +C E R   A  +L EM   G
Sbjct: 267 LVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIG 323

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P+ V +  LI G C N      GD++ A    DEM   G+ P   TY  L+ G   E 
Sbjct: 324 LVPDSVSYNILIRG-CSNN-----GDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMEN 377

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +E+A  + +E+ ++GI LD+V +  +I+G+C+ G   +A  +  EM+  G+KP   TYT
Sbjct: 378 KIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYT 437

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I   C+   T+    L +++   G  P +   N LM+G C  G +  A  LL  M  +
Sbjct: 438 SLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRM 497

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            + PDD+TYN L+ G C  G  E+  +L  E   +G+  D+  Y +L+S  SK
Sbjct: 498 NIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSK 550


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/444 (29%), Positives = 221/444 (49%), Gaps = 12/444 (2%)

Query: 16  FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGF 74
           F    +  S  R +L   +       +  LF  ++ +R   LP +V    L+ V   +  
Sbjct: 40  FCFWIRAFSNYRKILRNGLHNLQFNEALDLFTRMVHSRP--LPSIVDFTRLLSVIAKMKR 97

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
            D  I  F  ++          C  +++ + R++ P     F  +++  G+ P +  F  
Sbjct: 98  FDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTS 157

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+H  C   +I+DA  +FD+    G     V++ TLI+  CK ++L+    + + M  +G
Sbjct: 158 LLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNG 217

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +RP+V TY++L++GLC+  R  DA  LL +M +RG+ PN + FT LID   K G+I    
Sbjct: 218 IRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKI---- 273

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA+++   M    + PD  TYT L++G C  G L+ A  +   M   G   + V +T
Sbjct: 274 --MEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYT 331

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI GFC+  +V +  ++  EM + GL  +  TYT++I  +C  G       +  +M S 
Sbjct: 332 TLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSR 391

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED- 433
              P + TYN L++GLC +G ++ A M+   M    +  + +TY I+++G CK G  ED 
Sbjct: 392 RAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDA 451

Query: 434 FDKLQS--EKGLVSDYACYTSLVS 455
           FD   S   KG+  +   YT+++S
Sbjct: 452 FDLFCSLFSKGMKPNVITYTTMIS 475



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 153/294 (52%), Gaps = 6/294 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P+V  +N L+  LC+ G+  DA  +  +  KRG+    ++F  LI+   K   + 
Sbjct: 215 DNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIM 274

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   L  VM    + PDV+TY+ALINGLC   RLD+A  + + M   G  PN+V +TTLI
Sbjct: 275 EAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI 334

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G CK+ R++      +  KI  EM   GL  + ITYT+L+ G+C  G  + A ++  +M
Sbjct: 335 HGFCKSKRVE------DGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQM 388

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             R    D   +  L+ G C  G V +A  + + M K  +  +  TYT++I   CK G  
Sbjct: 389 GSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKV 448

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           +  F L   + S G  P V TY  +++G C+ G +  A+ L   M + G +P++
Sbjct: 449 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNE 502



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 21/353 (5%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F  L+  + K  +      +F++    G+     + N ++N  C++         
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ T+++L++G C  NR++DA  L  ++   G  PN V +TTLI   CK
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCK 199

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           N  ++       A +I ++M  NG+ P+ +TY  L+ G C+ G    A  + ++M+KRGI
Sbjct: 200 NRHLN------HAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGI 253

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + + + FTALI  F + GK++EA+ + + M+++ + PD  TYT +I+  C  G      +
Sbjct: 254 QPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQ 313

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M S+G+ P   TY  L++G CK  ++++   +   M   G+V + ITY +L++G+C
Sbjct: 314 MFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYC 373

Query: 427 KHGNP----EDFDKLQSEKG--------LVSDYACYTSLVSKS---SKYRQKR 464
             G P    E F+++ S +         ++ D  CY   V K+    KY +KR
Sbjct: 374 LVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKR 426



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 61/110 (55%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  +NVL+  LC  G ++ A M+F    KR +    V++  +I G CK   +++ F L
Sbjct: 395 PDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDL 454

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +   GM+P+V TY+ +I+G C+   + +A+ L  +M E G  PN+ +
Sbjct: 455 FCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 218/424 (51%), Gaps = 9/424 (2%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDAL 65
           +  +    H LV  +M+  AR +L  +    G   S+ +F +++ T R  +    V D L
Sbjct: 72  VQLFCITTHILVRARMYDPARHILKELSLMSG--KSSFVFGALMATYRLCNSNPSVFDIL 129

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           + VY+  G + D+++ FRL+  + F      C  ++  ++++        F  E+L    
Sbjct: 130 IRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKI 189

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P V  FN+L++ LC EG  K +  +  +  K G   T V++NT+++ +CK         
Sbjct: 190 CPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIE 249

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   G+  DV TY+ LI+ LC+ NR     LLL +M +R + PN+V + TL++G  
Sbjct: 250 LLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFS 309

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             G++ +      AR++++EM T GL+P+ +T+  L+DG   EG+ + AL +   M  +G
Sbjct: 310 NEGKVLI------ARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKG 363

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +    V++  L+ G C+  +   A      M + G+     TYT +ID  CKNG      
Sbjct: 364 LIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAV 423

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +L EM  DG  P + TY+AL+NG C+ G+LK A  ++  +  +G+ P+ I Y+ L+   
Sbjct: 424 VMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNC 483

Query: 426 CKHG 429
           C+ G
Sbjct: 484 CRMG 487



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L +G SP+   FN L+     EG  K+A  +F     +GL  T VS+  L++G CK  
Sbjct: 323 EMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNA 382

Query: 179 NLD--EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             D   GF ++  M+ +G+     TY+ +I+GLCK   LD+A ++L+EM + G+ P+ V 
Sbjct: 383 EFDLARGFYMR--MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVT 440

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++ LI+G C+ GR      +K A++IV  +   GL+P+ I Y+ L+   C+ G L+  + 
Sbjct: 441 YSALINGFCRVGR------LKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIR 494

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I + MI  G   D+  F  L++  C+ GKV EAE  +R M   G+ P+  ++  +I+ + 
Sbjct: 495 IYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYG 554

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            +G+    F +  EM   GH P   TY +L+ GLCK G L  A   L ++ ++    D +
Sbjct: 555 SSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTV 614

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
             N L+   CK GN +    L  E   + ++ D   YTSL+S
Sbjct: 615 MCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLIS 656



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 167/369 (45%), Gaps = 14/369 (3%)

Query: 82  FRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           F L R  Y R+   G          +ID + +       +    E+   G  P +  ++ 
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSA 443

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++  C+ G++K A+ +     + GL    + ++TLI   C+   L E  R+   M   G
Sbjct: 444 LINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEG 503

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PD +T++ L+  LCK  ++ +AE  +  M   G+ PN V F  LI+G+        +G
Sbjct: 504 NTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGY------GSSG 557

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           +  +A  + DEM   G +P   TY  LL G CK G L +A    K +      +D V   
Sbjct: 558 EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCN 617

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI+  C+ G + +A  +  EM++  + PD  TYT +I   C+ G T       KE  + 
Sbjct: 618 TLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEAR 677

Query: 375 GHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           G+L P    Y   ++G+ K GQ K        M  LG+  D +T N +++G+ + G  E 
Sbjct: 678 GNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEK 737

Query: 434 FDKLQSEKG 442
              L  E G
Sbjct: 738 THDLLFEMG 746



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 165/360 (45%), Gaps = 29/360 (8%)

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            C +D M +         F  ++   G +  V   N ++    + GKI+    +  E G +
Sbjct: 689  CFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQ 748

Query: 159  GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                   ++N L++G+ K K++   F L   M  SG+ PD  T  ++I G+C+ N L+  
Sbjct: 749  NQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIG 808

Query: 219  ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
              +L     RG+  +   F  LI   C NG I+ A DM                      
Sbjct: 809  LKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSV 868

Query: 257  -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +E+R ++ EM   G++P+   Y  LL+G C+ GD+++A  +++EMI   I   
Sbjct: 869  LNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPP 928

Query: 310  NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            NVA +A++    + GK  EA  +LR MLK+ L P  A++T ++  FCKNG+      L  
Sbjct: 929  NVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRV 988

Query: 370  EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             M + G    + +YN L+ GLC  G +  A  L + M   G + +  TY  L+ G    G
Sbjct: 989  VMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQG 1048



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 168/349 (48%), Gaps = 12/349 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T+  Y  ++  G +P  + FNVL+  LCK GK+ +A+         G+   AVSF+ LIN
Sbjct: 492 TIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLIN 551

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+  +    + F +   M   G  P  +TY +L+ GLCK   L  AE  L  +       
Sbjct: 552 GYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAV 611

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V+  TLI   CK+G +D      +A  +  EM    + PD  TYT L+ G C++G   
Sbjct: 612 DTVMCNTLITAMCKSGNLD------KAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTV 665

Query: 293 SALDIRKEMIKRGIELDN-VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
            A+   KE   RG  + N V +T  + G  + G+        ++M K+GL  D  T   +
Sbjct: 666 IAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAM 725

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID + + G  +    LL EM +    P + TYN L++G  K   +  + ML  +M+  G+
Sbjct: 726 IDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGI 785

Query: 412 VPDDIT-YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
           +PD +T Y+I+L G C+    E   K+      +G+  D   +  L+SK
Sbjct: 786 LPDKLTCYSIIL-GICESNMLEIGLKILKAFICRGVEVDRHTFNMLISK 833



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 178/399 (44%), Gaps = 47/399 (11%)

Query: 97   CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
            C  LI  M ++      +  + E++     P  + +  L+  LC++GK   A +   E  
Sbjct: 616  CNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAE 675

Query: 157  KRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             RG L    V +   ++G  KA     GF  +  M+  G+  DV T +A+I+G  +  ++
Sbjct: 676  ARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKI 735

Query: 216  DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +    LL EM  +   PN   +  L+ G+ K   +  +  +  +      M  +G+ PDK
Sbjct: 736  EKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRS------MILSGILPDK 789

Query: 276  IT-YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV-------- 326
            +T Y+I+L G C+   LE  L I K  I RG+E+D   F  LIS  C  G++        
Sbjct: 790  LTCYSIIL-GICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVN 848

Query: 327  ---------------------------VEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
                                        E+  +L EM K G+ P+   Y  +++  C+ G
Sbjct: 849  VMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVG 908

Query: 360  DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
            D KT F + +EM +    P     +A++  L K G+   A++LL +ML + +VP   ++ 
Sbjct: 909  DIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFT 968

Query: 420  ILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
             L+   CK+GN  +  +L+   S  GL  D   Y  L++
Sbjct: 969  TLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLIT 1007



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 11/261 (4%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P V+    LI    +E  + D+  +   M   G  P+      ++      G I  + + 
Sbjct: 123 PSVF--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL------GSIVKSCED 174

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                 + EM    + PD  T+ IL++  C EG  + +  + ++M K G     V +  +
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +  +C+ G+   A  +L  M   G+  D  TY M+I   C++  +  G+ LL++MR    
Sbjct: 235 LHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMI 294

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P   TYN L+NG    G++  A  LL+ ML  G+ P+ +T+N L++GH   GN ++  K
Sbjct: 295 HPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALK 354

Query: 437 ---LQSEKGLVSDYACYTSLV 454
              +   KGL+     Y  L+
Sbjct: 355 MFHMMEAKGLIGTEVSYGVLL 375



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 169/427 (39%), Gaps = 83/427 (19%)

Query: 36   KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-- 93
            +KG    A LFA   E RG  +P  V+           F+D   +  +     YFR    
Sbjct: 660  RKGKTVIAILFAKEAEARGNLVPNKVMYTC--------FVDGMFKAGQWKAGFYFRQQMD 711

Query: 94   -------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
                         +ID   R      T     E+ +    P++  +N+L+H   K   + 
Sbjct: 712  KLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVS 771

Query: 147  DAQMVF-----------------------------------DEFGKRGLHATAVSFNTLI 171
             + M++                                     F  RG+     +FN LI
Sbjct: 772  TSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLI 831

Query: 172  NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            +  C    ++  F + +VM   G+  D  T  A+++ L + +R  ++ ++LHEM ++G++
Sbjct: 832  SKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGIS 891

Query: 232  PNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKI 262
            P    +  L++G C+ G I  A                             G   EA  +
Sbjct: 892  PESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLL 951

Query: 263  VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            +  M    L P   ++T L+  FCK G++  AL++R  M   G++LD V++  LI+G C 
Sbjct: 952  LRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCA 1011

Query: 323  GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR-LLKEMRSDGHLPAVE 381
             G +  A  +  EM + G   +  TY  ++      G   +G   +LK++ + G + A+ 
Sbjct: 1012 KGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQGTEFSGTDIILKDLLARGFITAM- 1070

Query: 382  TYNALMN 388
            ++N ++N
Sbjct: 1071 SFNHMIN 1077


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 188/362 (51%), Gaps = 34/362 (9%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SPS  V +VL+    K G +++A  V       GL  T    N L+    +A  ++  ++
Sbjct: 170 SPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWK 229

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           LK  MEG+G+ PDVYTYS  I   CK    D A+ +  EM  R    N+V +  +I G C
Sbjct: 230 LKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLC 289

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           ++G ++ A                               +KEA+ ++DEM  +GL P+ +
Sbjct: 290 RSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIV 349

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  L+DGF KEG    A DI KEMI  G++ + + +  LI G C+ G++  A ++L+EM
Sbjct: 350 VYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEM 409

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +KVGL+PD  TY  ++    +  D    F LL EMR+ G LP V +Y  ++NGLC++G+ 
Sbjct: 410 IKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGES 469

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTS 452
           K A  LL+ M+  G+ P+   Y  L+ GH K GN     E  +K+ ++  +  D  CY S
Sbjct: 470 KEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKM-TKANVHPDLFCYNS 528

Query: 453 LV 454
           L+
Sbjct: 529 LI 530



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 197/426 (46%), Gaps = 67/426 (15%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D  M+            E++  G  P+  +++ L+  LCK G++  A  +  E  K G
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVG 413

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     ++N L+ GH +  + D  F L + M  SG+ P+VY+Y  +INGLC+     +A 
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            LL EM   GL PN  ++  LI GH K G I +A                          
Sbjct: 474 NLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGL 533

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G M+EA +   ++   GL PD+ TY+ L+ G+CK G+LE A  + ++M+  G++ + 
Sbjct: 534 STVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNA 593

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI------------------ 352
             +T L+ G+ +     +   +L+ ML  G KPD+  Y +VI                  
Sbjct: 594 DTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTE 653

Query: 353 -----------------DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
                               CK  D +    LL EM  +G  P +  YNAL++G C+ G 
Sbjct: 654 VEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGD 713

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FD--KLQSEKGLVSDYACYTS 452
           +  A  + D++L  G+VP+ +TY  L++G+CK+G+  D FD  K   ++G+  D   Y  
Sbjct: 714 ISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNV 773

Query: 453 LVSKSS 458
           L +  S
Sbjct: 774 LATGCS 779



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 165/348 (47%), Gaps = 30/348 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+ +++  L+    KEG I  A    ++  K  +H     +N+LI G     
Sbjct: 478 EMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVG 537

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++E     + ++  G+ PD +TYS LI+G CK   L+ A+ LL +M   GL PN   +T
Sbjct: 538 RMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYT 597

Query: 239 TLIDGHCKNG-----------------------------RIDMAGDMKEARKIVDEMCTN 269
            L++G+ K+                               +  + +M+ A  ++ E+  N
Sbjct: 598 DLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN 657

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD   Y+ L+ G CK  D+E A+ +  EM K G+E   V + ALI GFCR G +  A
Sbjct: 658 GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 717

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +   +L  GL P+  TYT +ID  CKNGD    F L KEM   G  P    YN L  G
Sbjct: 718 RNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATG 777

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
                 L+ A  L + M + G     + +N L+ G CK G  ++ +KL
Sbjct: 778 CSDAADLEQALFLTEEMFNRGYANVSL-FNTLVHGFCKRGKLQETEKL 824



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 172/331 (51%), Gaps = 11/331 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +Y ++   G  P  + ++ L+H  CK G ++ A  +  +    GL   A ++  L+ G+ 
Sbjct: 545 YYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYF 604

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K+ + ++   +   M GSG +PD + Y  +I  L +   ++ A ++L E+ + GL P+  
Sbjct: 605 KSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLH 664

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           I+++LI G CK        DM++A  ++DEM   GL P  + Y  L+DGFC+ GD+  A 
Sbjct: 665 IYSSLISGLCK------IADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRAR 718

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++   ++ +G+  + V +TALI G C+ G + +A  + +EML  G+ PD   Y ++    
Sbjct: 719 NVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGC 778

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
               D +    L +EM + G+   V  +N L++G CK G+L+    LL  M+D  +VP+ 
Sbjct: 779 SDAADLEQALFLTEEMFNRGY-ANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNA 837

Query: 416 ITYNILLEGHCKHGNPED----FDKLQSEKG 442
            T   ++    K G   +    F +LQ +K 
Sbjct: 838 QTVEKVVSEFGKAGKLGEAHRVFAELQQKKA 868



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 7/237 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I  + R+    V      E+   G  P +++++ L+  LCK   ++ A  + DE  K G
Sbjct: 634 VIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEG 693

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V +N LI+G C++ ++     +   +   G+ P+  TY+ALI+G CK   + DA 
Sbjct: 694 LEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAF 753

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM +RG+ P+  ++  L  G C +     A D+++A  + +EM   G   +   + 
Sbjct: 754 DLYKEMLDRGIAPDAFVYNVLATG-CSD-----AADLEQALFLTEEMFNRGY-ANVSLFN 806

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            L+ GFCK G L+    +   M+ R I  +      ++S F + GK+ EA R+  E+
Sbjct: 807 TLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAEL 863


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/322 (35%), Positives = 183/322 (56%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++   G  P    FN L++ LC EGKIK+A  +F+E    G     +S+NT+ING CK  
Sbjct: 156 KMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNG 215

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N     R+   ME +  +P+V TY+ +I+ LCK+  +++A   L EM +RG+ P+ V + 
Sbjct: 216 NTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYN 275

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T++ G C  G+++      EA ++  EM    + PD +T+ IL+DG CKEG +  A  + 
Sbjct: 276 TILHGFCSLGQLN------EATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M ++G E +   + AL+ G+C   ++ EA ++L  M+  G  P+ ++Y ++I+ +CK+
Sbjct: 330 ETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKS 389

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                  RLL EM      P   TY+ LM GLC+ G+ + A  L   M   G++PD + Y
Sbjct: 390 KRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAY 449

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
           +ILL+G CKHG+ ++  KL  E
Sbjct: 450 SILLDGFCKHGHLDEALKLLKE 471



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 188/351 (53%), Gaps = 6/351 (1%)

Query: 78  AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
           A++ FR + ++  +        +ID + +  L    + F  E++D G  P V  +N ++H
Sbjct: 220 AVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILH 279

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197
             C  G++ +A  +F E   R +    V+FN L++G CK   + E   +   M   G  P
Sbjct: 280 GFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEP 339

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           + YTY+AL++G C  N++D+A  +L  M  +G  PN   +  LI+G+CK+ R      M 
Sbjct: 340 NAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKR------MN 393

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA++++ EM    L PD +TY+ L+ G C+ G    AL++ KEM   G+  D +A++ L+
Sbjct: 394 EAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILL 453

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            GFC+ G + EA ++L+EM +  +KP+   YT++I      G  +    L  ++ +DG  
Sbjct: 454 DGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIR 513

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           P + TYN ++ GL K G    A      M D G +PD  +YN++++G  ++
Sbjct: 514 PDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQN 564



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 176/308 (57%), Gaps = 6/308 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E++     P    FN+L+  LCKEG + +A+ V +   ++G    A ++N L++G+C
Sbjct: 293 LFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYC 352

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +DE  ++  +M G G  P++ +Y+ LING CK  R+++A+ LL EM E+ LTP+ V
Sbjct: 353 LHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTV 412

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            ++TL+ G C+ GR       +EA  +  EMC++GL PD + Y+ILLDGFCK G L+ AL
Sbjct: 413 TYSTLMQGLCQVGRP------REALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEAL 466

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + KEM +R I+ + + +T LI G    GK+  A+ +  ++   G++PD  TY ++I   
Sbjct: 467 KLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGL 526

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K G +   +   ++M  DG LP   +YN ++ G  ++     A  L+D M+      D 
Sbjct: 527 LKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADS 586

Query: 416 ITYNILLE 423
            T+ +LL+
Sbjct: 587 STFQMLLD 594



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 210/425 (49%), Gaps = 11/425 (2%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           ++KK   SSA    + ++  G       L+ L+     L  +D A+     + K   +  
Sbjct: 106 IAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPD 165

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
           A     LI+ +         +G + E++  G+ P+V  +N +++ LCK G    A  VF 
Sbjct: 166 AITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFR 225

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           +  +       V++NT+I+  CK + ++E     S M   G+ PDV TY+ +++G C   
Sbjct: 226 KMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLG 285

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           +L++A  L  EM  R + P+ V F  L+DG CK G +       EAR + + M   G  P
Sbjct: 286 QLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVS------EARCVSETMTEKGAEP 339

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           +  TY  L+DG+C    ++ A+ +   MI +G   +  ++  LI+G+C+  ++ EA+R+L
Sbjct: 340 NAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLL 399

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EM +  L PD  TY+ ++   C+ G  +    L KEM S G LP +  Y+ L++G CKH
Sbjct: 400 SEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKH 459

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYAC 449
           G L  A  LL  M +  + P+ I Y IL+ G    G      E F KL ++ G+  D   
Sbjct: 460 GHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSAD-GIRPDIWT 518

Query: 450 YTSLV 454
           Y  ++
Sbjct: 519 YNVMI 523



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 171/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PSV  F   +  + K+ +   A  + ++    G+     S N LIN  C+  ++D    +
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G++PD  T++ LINGLC E ++ +A  L +EM   G  PN + + T+I+G CK
Sbjct: 154 MGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCK 213

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NG   M      A ++  +M  N   P+ +TY  ++D  CK+  +  A++   EM+ RGI
Sbjct: 214 NGNTIM------AVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGI 267

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  ++ GFC  G++ EA R+ +EM+   + PD  T+ +++D  CK G       
Sbjct: 268 PPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARC 327

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + M   G  P   TYNALM+G C H Q+  A  +L  M+  G  P+  +YNIL+ G+C
Sbjct: 328 VSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYC 387

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           K     +  +L    SEK L  D   Y++L+
Sbjct: 388 KSKRMNEAKRLLSEMSEKNLTPDTVTYSTLM 418



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 173/331 (52%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  +N ++  LCK+  + +A     E   RG+    V++NT+++G C    L+E  RL
Sbjct: 234 PNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRL 293

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M G  + PD  T++ L++GLCKE  + +A  +   M E+G  PN   +  L+DG+C 
Sbjct: 294 FKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCL 353

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + ++D      EA K++  M   G  P+  +Y IL++G+CK   +  A  +  EM ++ +
Sbjct: 354 HNQMD------EAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNL 407

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V ++ L+ G C+ G+  EA  + +EM   GL PD   Y++++D FCK+G      +
Sbjct: 408 TPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALK 467

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LLKEM      P +  Y  L+ G+   G+L+ A  L   +   G+ PD  TYN++++G  
Sbjct: 468 LLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLL 527

Query: 427 KHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           K G      +F +   + G + D   Y  ++
Sbjct: 528 KEGLSDEAYEFFRKMEDDGFLPDSCSYNVII 558



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 9/262 (3%)

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           RP V  +   +  + K+ +   A  L ++M   G+T N      LI+  C+   +D A  
Sbjct: 93  RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFA-- 150

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
                 ++ +M   G+ PD IT+  L++G C EG ++ A+ +  EM+  G E + +++  
Sbjct: 151 ----VSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNT 206

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I+G C+ G  + A R+ R+M +   KP+  TY  +ID  CK+         L EM   G
Sbjct: 207 VINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRG 266

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
             P V TYN +++G C  GQL  A  L   M+   V+PD +T+NIL++G CK G   +  
Sbjct: 267 IPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEAR 326

Query: 434 -FDKLQSEKGLVSDYACYTSLV 454
              +  +EKG   +   Y +L+
Sbjct: 327 CVSETMTEKGAEPNAYTYNALM 348



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 6/184 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + +   P   L  + E+   G  P +  +++L+   CK G + +A  +  E  +R 
Sbjct: 417 LMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERR 476

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    + +  LI G   A  L+    L S +   G+RPD++TY+ +I GL KE   D+A 
Sbjct: 477 IKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAY 536

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
               +M + G  P+   +  +I G  +N       D   A +++DEM     + D  T+ 
Sbjct: 537 EFFRKMEDDGFLPDSCSYNVIIQGFLQN------QDSSTAIQLIDEMVGKRFSADSSTFQ 590

Query: 280 ILLD 283
           +LLD
Sbjct: 591 MLLD 594



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ AL     M++       V F   +    +  +   A  +  +M   G+  +  +  
Sbjct: 76  SIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLN 135

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I+C C+         ++ +M   G  P   T+N L+NGLC  G++K A  L + M+  
Sbjct: 136 VLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 410 GVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKG--------LVSDYACYTSLVSKS 457
           G  P+ I+YN ++ G CK+GN       F K++  +G         + D  C   LV+++
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEA 255

Query: 458 SKY 460
            ++
Sbjct: 256 VEF 258


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 181/343 (52%), Gaps = 29/343 (8%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
             GF   +   G  P++  FN++++ LC++G++K+   V  E  ++G     V++NTL+N
Sbjct: 37  AFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVN 96

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CK  N  +   L + M  +G+ P+V TY++LIN +CK   L+ A     +M  RGL P
Sbjct: 97  GYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCP 156

Query: 233 NDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIV 263
           N+  +TT+I+G  + G +D A                             G M+EA  ++
Sbjct: 157 NERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLL 216

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            +M   G+ PD ++Y+ ++ GF +  +L+ A  ++ EMI + +  D V +++LI G C  
Sbjct: 217 QDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQ 276

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            ++ EA  M +EML + L PD+ TYT +I+ +CK GD      L  EM   G LP   TY
Sbjct: 277 RRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTY 336

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           N L+NGL K  + K A  LL  +     +P  +TYN L+E  C
Sbjct: 337 NVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCC 379



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 186/357 (52%), Gaps = 12/357 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L F+ E+   G  P+V  +N ++   CK  +  +A       G +GL    ++FN +ING
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+   L E   +   M   G  PD  TY+ L+NG CKE     A +L  EM   GL+PN
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPN 122

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V +T+LI+  CK      AG++  A +  D+M   GL P++ TYT +++GF ++G L+ 
Sbjct: 123 VVTYTSLINSMCK------AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDE 176

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  EM + G     V + ALI+G C  G++ EA  +L++M+  G+ PD  +Y+ +I 
Sbjct: 177 AYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIIS 236

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            F +N +    F++  EM     LP   TY++L+ GLC+  +L  A  +   ML + + P
Sbjct: 237 GFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPP 296

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV---SKSSKYRQKR 464
           D+ TY  L+  +CK G+      L  E   KG + D   Y  L+   +K ++ ++ R
Sbjct: 297 DEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEAR 353



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 163/283 (57%), Gaps = 9/283 (3%)

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           G R    ME +G  P+V TY+ +I+G CK  R D+A   L  M  +GL PN + F  +I+
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C++GR      +KE  +++ EM   G  PD++TY  L++G+CKEG+   AL +  EM+
Sbjct: 62  GLCRDGR------LKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMV 115

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + G+  + V +T+LI+  C+ G +  A     +M   GL P++ TYT +I+ F + G   
Sbjct: 116 RNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLD 175

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             +R+L EM   G +P++ TYNAL+NG C  G+++ A  LL  M+  GV+PD ++Y+ ++
Sbjct: 176 EAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTII 235

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
            G  ++   +   +++ E   K ++ D   Y+SL+    + R+
Sbjct: 236 SGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRR 278



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 187/426 (43%), Gaps = 82/426 (19%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E++  G SP+V  +  L++ +CK G +  A   FD+   RGL     ++ T+IN
Sbjct: 107 ALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIIN 166

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +   LDE +R+ + M  SG  P + TY+ALING C   R+++A  LL +M  +G+ P
Sbjct: 167 GFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLP 226

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIV 263
           + V ++T+I G  +N  +D A  MK                             EA  + 
Sbjct: 227 DVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMF 286

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF---------- 313
            EM T  L PD+ TYT L++ +CKEGDL  AL +  EMI++G   D V +          
Sbjct: 287 QEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQ 346

Query: 314 ----------------------------------------TALISGFCRGGKVVEAERML 333
                                                    AL+ GFC  G + EA+++ 
Sbjct: 347 ARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVF 406

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M+    KP++A Y ++I   C+ G+    ++L KEM     +P   T  AL+  L   
Sbjct: 407 ESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTE 466

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           G     N ++  +L    + D     +L+E + K GN +    L +E    GL+      
Sbjct: 467 GMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGTP 526

Query: 451 TSLVSK 456
           T+ +++
Sbjct: 527 TNAIAR 532


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 211/438 (48%), Gaps = 44/438 (10%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP------------ 110
           +A+M + VD G+ D A + +  +R              +    RT+ P            
Sbjct: 115 NAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSS 174

Query: 111 -----------TVTLGFYLE------------ILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
                      TV  GFY E            +L  G S  +  FN L+H LCK+G +K+
Sbjct: 175 QGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKE 234

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
            + + D+  KRG+     ++N  I G C+   LD   R+   +   G +PDV TY+ LI 
Sbjct: 235 CEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIY 294

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           GLCK ++  +AE+ L ++   GL P+   + TLI G+CK G + +A       +I+    
Sbjct: 295 GLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLA------ERILVNAV 348

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
            NG  PD+ TY  L+DG C EG+   AL +  E + +GI+ + + +  LI G    G ++
Sbjct: 349 FNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLIL 408

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA ++  EM + GL P+  T+ ++++  CK G       L+K M S G+ P + T+N L+
Sbjct: 409 EAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF---DKLQSEKGLV 444
           +G     +++NA  +LD M+D GV PD  TYN LL G CK    ED     K   EKG  
Sbjct: 469 HGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCA 528

Query: 445 SDYACYTSLVSKSSKYRQ 462
            +   +  L+    +Y +
Sbjct: 529 PNLFTFNILLESLCRYHK 546



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 7/299 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P V  FN+L++ LCK G + DA  +      +G      +FN LI+G+    
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++    +  VM  +G+ PDVYTY++L+NGLCK ++ +D       M E+G  PN   F 
Sbjct: 476 KMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFN 535

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++  C+  ++D      +A  +++EM    +NPD +T+  L+DGFCK GDL+ A  + 
Sbjct: 536 ILLESLCRYHKLD------KALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589

Query: 299 KEMIK-RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           ++M +   +      +  +I  F     V  AE++ +EM+   L PD  TY +++D FCK
Sbjct: 590 RKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            G+   G++ L EM  +G +P++ T   ++N LC   ++  A  ++  M+  G+VP+ +
Sbjct: 650 TGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAV 708



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 178/356 (50%), Gaps = 25/356 (7%)

Query: 94  ARGCRCLIDRMM-RTNLPTV-TLGFYLE-----------------ILDYGYSPSVYVFNV 134
            + C  L+D+++ R  LP + T  F+++                 ++D G  P V  +N 
Sbjct: 232 VKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNY 291

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++ LCK  K ++A++   +    GL   + ++NTLI G+CK   +    R+      +G
Sbjct: 292 LIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNG 351

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PD +TY +LI+GLC E   + A  L +E   +G+ PN +++ TLI G    G I    
Sbjct: 352 FVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLI---- 407

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA ++  EM   GL P+  T+ IL++G CK G +  A  + K MI +G   D   F 
Sbjct: 408 --LEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFN 465

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI G+    K+  A  +L  M+  G+ PD  TY  +++  CK    +      K M   
Sbjct: 466 ILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEK 525

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           G  P + T+N L+  LC++ +L  A  LL+ M +  V PD +T+  L++G CK+G+
Sbjct: 526 GCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGD 581



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + +  L+  LC EG+   A  +F+E   +G+    + +NTLI G      + E 
Sbjct: 351 GFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEA 410

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L S M   G+ P+V T++ L+NGLCK   + DA+ L+  M  +G  P+   F  LI G
Sbjct: 411 AQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +    +      M+ A +I+D M  NG++PD  TY  LL+G CK    E  ++  K M++
Sbjct: 471 YSTQLK------MENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVE 524

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   +   F  L+   CR  K+ +A  +L EM    + PD  T+  +ID FCKNGD   
Sbjct: 525 KGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDG 584

Query: 364 GFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            + L ++M     +  +  TYN +++   +   +  A  L   M+D  + PD  TY +++
Sbjct: 585 AYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMV 644

Query: 423 EGHCKHGN 430
           +G CK GN
Sbjct: 645 DGFCKTGN 652



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 162/336 (48%), Gaps = 9/336 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           Y   P+V+ +N +M  L   G    A  V+     RG+     SF   +   C+      
Sbjct: 105 YDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHA 164

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL + M   G   +V  Y  ++ G  +EN  D+   L  +M   G++     F  L+ 
Sbjct: 165 ALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLH 224

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CK       GD+KE  K++D++   G+ P+  TY   + G C++G+L++A+ +   +I
Sbjct: 225 VLCKK------GDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLI 278

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G + D V +  LI G C+  K  EAE  L +++  GL+PD  TY  +I  +CK G  +
Sbjct: 279 DQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQ 338

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              R+L     +G +P   TY +L++GLC  G+   A  L +  L  G+ P+ I YN L+
Sbjct: 339 LAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398

Query: 423 EGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
           +G    G   +  +L    SEKGL+ +   +  LV+
Sbjct: 399 KGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVN 434



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 168/349 (48%), Gaps = 26/349 (7%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPA 94
           KG+  +  L+ +++  +G    GL+L+A  +     + G + + +Q F +L     ++  
Sbjct: 385 KGIKPNVILYNTLI--KGLSNQGLILEAAQLASEMSEKGLIPE-VQTFNILVNGLCKM-- 439

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
            GC    D +++             ++  GY P ++ FN+L+H    + K+++A  + D 
Sbjct: 440 -GCVSDADGLVKV------------MISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 486

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
               G+     ++N+L+NG CK    ++       M   G  P+++T++ L+  LC+ ++
Sbjct: 487 MMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHK 546

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           LD A  LL EM  + + P+ V F TLIDG CKNG  D+ G     RK+ +    +   P 
Sbjct: 547 LDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG--DLDGAYTLFRKMEEVYMVSCSTP- 603

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY I++  F ++ ++  A  + +EM+ R +  D   +  ++ GFC+ G V    + L 
Sbjct: 604 --TYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLL 661

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP-AVET 382
           EM++ G  P   T   VI+C C          ++  M   G +P AV T
Sbjct: 662 EMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNT 710



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 125/283 (44%), Gaps = 11/283 (3%)

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
             S+ +  G +  + TY ++I  L    + +  E +L +M  R    N ++    +    
Sbjct: 27  FNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDM--RQNVGNHMLEGVYVGAMK 84

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             GR    G ++EA  + + M      P   +Y  ++      G  + A  +   M  RG
Sbjct: 85  NYGR---KGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRG 141

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D  +FT  +  FCR  +   A R+L  M   G + +   Y  V+  F +      G+
Sbjct: 142 ITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGY 201

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L  +M + G    + T+N L++ LCK G +K    LLD ++  GV+P+  TYN  ++G 
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGL 261

Query: 426 CKHGNPEDFDKLQS---EKGLVSDYACYTSLV---SKSSKYRQ 462
           C+ G  +   ++     ++G   D   Y  L+    K+SK+++
Sbjct: 262 CQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQE 304


>gi|357495705|ref|XP_003618141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493156|gb|AES74359.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 846

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 228/475 (48%), Gaps = 44/475 (9%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG--SSASLFASILE-TRGTHLPG 59
           F L+L  Y  +VH L  +++  QA  LL  ++    +   S   ++  +++ T   +   
Sbjct: 134 FTLSLQNYCLIVHILGWNQIFDQAMKLLCELIQLNNVNVVSYDDVYKCLIDCTEDCNWNP 193

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++ D L+  YV LG ++  ++ F    +  F      C CL++ + + N        Y E
Sbjct: 194 VIFDMLIKAYVKLGMVEKGLETFWKNVEGSFVPNVVACNCLLNGLSKINYIGECWEVYEE 253

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G   + Y FN++ H LC+EG         ++  + G     V++N LING+CK + 
Sbjct: 254 MGRLGIHRNGYTFNIMTHVLCREGDSDKVNGFLEKMEEEGFEPDLVTYNILINGYCKKRR 313

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L++ F L  +M   G+ P++ +YSAL+NGLCKE ++ +A  L ++M +RG+ P+ V + T
Sbjct: 314 LEDAFYLYKIMGIRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVVSYNT 373

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+CK G     G M+  R ++ EM   G+ PD +T  I+  G+ +EG L SAL++  
Sbjct: 374 LISGYCKEG-----GKMQMCRSLLHEMIGIGIRPDNVTCRIVFQGYTREGKLLSALNMVA 428

Query: 300 EMIKRGIELDNVAFTALISGFCRGGK---------------------------------- 325
           E+ + GI++    +  L+   C+ G+                                  
Sbjct: 429 ELQRFGIKIPENLYDYLLVALCKEGRPFAARSFLIRISQDGDYVPEMSTYIKLAESLCSF 488

Query: 326 --VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
             V EA  +  EM K  +K +  TY  +I C C+   T     LL+EM S G LP +E  
Sbjct: 489 NNVEEALILKSEMAKKSMKLNLTTYKAIISCLCRVKRTSEAENLLEEMVSLGILPDLEIK 548

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
            AL+NG C+   +  A  LL        V D  +YN +++  C+ GN  +  +LQ
Sbjct: 549 RALINGYCEENDVDKAVSLLKFFAKEFQVYDTESYNAIVKVFCEVGNVAELMELQ 603


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 210/383 (54%), Gaps = 24/383 (6%)

Query: 89  YFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILD----YGYS--PSVYVFNVL 135
           + R+   GC         LI  + +T    + L  + E+L+    YG +  P V  ++++
Sbjct: 184 FLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSII 243

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           +  LCK G+  +A+ +F+E   +G+    +S++TLI+G C A   D+   L   M   G+
Sbjct: 244 IDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGV 303

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           +PD+ T+S LI+ LCKE ++ +A+ LL  M +RG+ PN + + +LIDG C      M GD
Sbjct: 304 QPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC------MVGD 357

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +  AR++   M + GL PD+I+YT L++G+CK   ++ A+++  EM++ G   +   +  
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L+ G  + GKV +A+++   M   G+  +   Y + +D  CKN        L  E++S  
Sbjct: 418 LLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYN 477

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
               +E Y+ L++GLCK G+L+ A  L + +   G+ PD +TYNI++ G CK G  ++  
Sbjct: 478 FKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNAN 537

Query: 434 --FDKLQSEKGLVSDYACYTSLV 454
             F+K++ E G   D   Y +L+
Sbjct: 538 ILFEKME-ENGCTPDIIAYNTLL 559



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 194/375 (51%), Gaps = 24/375 (6%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C ++R+      +  L     IL  GY P+V  +  L+  LC E +I +A  +F    
Sbjct: 135 CLCNVNRV------SEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQ 188

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM------EGSGMRPDVYTYSALINGLC 210
           K G    AV++ TLI G C+  N++   +L   M       G   +P V TYS +I+GLC
Sbjct: 189 KLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLC 248

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           K  R D+A+ L  EM  +G+ P+ + ++TLI G C  G+ D      +++ + DEM   G
Sbjct: 249 KVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWD------QSKHLFDEMVDQG 302

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD +T+++L+D  CKEG +  A  + + MI+RGI  + + + +LI GFC  G +  A 
Sbjct: 303 VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAR 362

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +   M   GL+PD+ +YT +I+ +CK    K    L  EM   G  P V TY  L+ GL
Sbjct: 363 ELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG----NPEDFDKLQSE--KGLV 444
            + G++ +A  L   M   GV  +   Y I L+G CK+       E F++L+S   K  +
Sbjct: 423 FQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNI 482

Query: 445 SDYACYTSLVSKSSK 459
            +Y+C    + K+ K
Sbjct: 483 ENYSCLIDGLCKAGK 497



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 204/420 (48%), Gaps = 32/420 (7%)

Query: 42  SASLFASILETRGTHLPGLVLDA--------------LMIVYVDLGFLDDAIQCFR---- 83
           S+++ +SI +T  TH P  +L A              L +     G +  AIQ F     
Sbjct: 23  SSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKTGNIT-AIQAFHFFDL 81

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++R H    P      L+  + + N  +     Y E+   G SP ++  ++L + LC   
Sbjct: 82  MMRSHPIP-PISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVN 140

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++ +A        +RG     V++ TLI G C    + E  RL   M+  G  P+  TY 
Sbjct: 141 RVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYG 200

Query: 204 ALINGLCKENRLDDAELLLHEM----CERGLT--PNDVIFTTLIDGHCKNGRIDMAGDMK 257
            LI GLC+   ++ A  L  EM     + G+   P  + ++ +IDG CK GR D      
Sbjct: 201 TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED------ 254

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA+++ +EM   G+ PD I+Y+ L+ GFC  G  + +  +  EM+ +G++ D V F+ LI
Sbjct: 255 EAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLI 314

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
              C+ GKV EA+++L  M++ G+ P+  TY  +ID FC  GD  +   L   M S G  
Sbjct: 315 DTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLE 374

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P   +Y  L+NG CK  ++K A  L + ML +G  P+  TY  LL+G  + G   D  KL
Sbjct: 375 PDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKL 434



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 64/322 (19%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G  P +  F+VL+  LCKEGK+ +A+ + +   +RG+    +++N+LI+G C   
Sbjct: 297 EMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVG 356

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE----------- 227
           +L+    L   M   G+ PD  +Y+ LING CK  ++ +A  L +EM +           
Sbjct: 357 DLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYG 416

Query: 228 ------------------------RGLTPNDVIFTTLIDGHCKNG--------------- 248
                                    G++ N  I+   +DG CKN                
Sbjct: 417 TLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSY 476

Query: 249 --RIDM------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             ++++            AG ++ A ++ +++   GL PD +TY I++ GFCK G +++A
Sbjct: 477 NFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNA 536

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + ++M + G   D +A+  L+ GFC G K+ E  ++L +M++  + P+ A+ T+V+D 
Sbjct: 537 NILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDM 596

Query: 355 FCKNGDTKTGFRLLKEMRSDGH 376
            CK+   K    LL +     H
Sbjct: 597 LCKDEKYKKFVDLLPKFPVQRH 618



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 94/190 (49%), Gaps = 9/190 (4%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRG----THLPGLVLDALMIVYVDLGFLDDAIQCFRL 84
           LL  +  K  +G +  LF  +++T G    + + G+ LD L         L +A++ F  
Sbjct: 418 LLKGLFQKGKVGDAKKLFG-VMKTYGVSANSQIYGIFLDGL----CKNDCLFEAMELFNE 472

Query: 85  LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
           L+ + F++      CLID + +          + ++   G  P V  +N+++H  CK G+
Sbjct: 473 LKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQ 532

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + +A ++F++  + G     +++NTL+ G C+   L+E  +L   M    + P+  + + 
Sbjct: 533 VDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTI 592

Query: 205 LINGLCKENR 214
           +++ LCK+ +
Sbjct: 593 VVDMLCKDEK 602



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%)

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           +F  L+ G  +     +   +  EM   GL PD  T +++ +C C           +  +
Sbjct: 93  SFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGI 152

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G++P V TY  L+ GLC   ++  A  L   M  LG  P+ +TY  L++G C+ GN 
Sbjct: 153 LRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNV 212

Query: 432 EDFDKLQSE 440
               KL  E
Sbjct: 213 NIALKLHKE 221


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 191/335 (57%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P V+ +  +++ LCK G+   A  +F + G+ G     V+++T+I+  CK + ++E 
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + S M+  G+ P+++TY++LI GLC  +R  +A  +L+EM    + PN V F+ LI+ 
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G +       EAR ++  M   G+ P+ +TY+ L++G+  + ++  A  +   MI 
Sbjct: 342 FCKEGNV------FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMIT 395

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G + D  ++  LI+G+C+  ++ EA+++  EM+  GL PD  +Y  +ID  C+ G  + 
Sbjct: 396 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 455

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L K M ++G+LP + TY+ L++G CK G L  A  L   M    + P+ + YNIL++
Sbjct: 456 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILID 515

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
             CK  N ++  KL SE   +GL  +   YT++++
Sbjct: 516 AMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIIN 550



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 6/299 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P++  F++L++  CKEG + +A+ V     + G+    V++++L+NG+    
Sbjct: 322 EMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQA 381

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E  +L  VM   G +PDV++Y+ LING CK  R+ +A+ L +EM  +GLTP+ V + 
Sbjct: 382 EVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYN 441

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLIDG C+ GR      ++EA  +   M TNG  PD  TY+ILLDGFCK+G L  A  + 
Sbjct: 442 TLIDGLCQLGR------LREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLF 495

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M    ++ + V +  LI   C+   + EA ++  E+   GL+P+   YT +I+  CK 
Sbjct: 496 RAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKE 555

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           G         + M  DG  P   +YN ++ G  +H     A  L+  M + G V D  T
Sbjct: 556 GLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 45  LFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           LF ++L T G +LP L   ++++  +   G+L  A + FR ++  Y +        LID 
Sbjct: 459 LFKNML-TNG-NLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 516

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           M ++         + E+   G  P+V ++  +++ LCKEG + +A   F    + G    
Sbjct: 517 MCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
             S+N +I G  + K+     +L   M   G   DV T
Sbjct: 577 EFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 202/392 (51%), Gaps = 43/392 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +  +  V   ++  +++ G   ++Y +N L++  CK G +  A+ ++ +    G
Sbjct: 399 LIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEG 458

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  TA +F TLI+G+CK   +++ F+L   M    + P VYT++ALI GLC  N + +A 
Sbjct: 459 LEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEAS 518

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM ER + P +V +  +I+G+CK      A +M +A +++++M  NGL PD  TY 
Sbjct: 519 KLFDEMVERKIKPTEVTYNVMIEGYCK------AHNMDKAFELLEDMLHNGLVPDTYTYR 572

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA--------ER 331
            L+ G C  G + +A D   ++ K+ ++L+ + ++AL+ G+C  G++ EA        +R
Sbjct: 573 PLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQR 632

Query: 332 ---------------------------MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                                      +L++M   GL+PD   YT +ID + K G  K  
Sbjct: 633 GINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKS 692

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
              L  M ++   P V TY A MNGLCK G++  A  L + ML   + P+ +TY   L+ 
Sbjct: 693 GECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDS 752

Query: 425 HCKHGNPEDFDKLQSE--KGLVSDYACYTSLV 454
             K GN ++   L  E  KGL+++ A Y  L+
Sbjct: 753 LTKEGNMKEATDLHHEMLKGLLANTATYNILI 784



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 228/485 (47%), Gaps = 38/485 (7%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSAS-LFASILET--RGTHLPGLVL 62
           T  +++ +VH LV +K+   A  LLH ++ +   GS    +F   LE+  +      L  
Sbjct: 95  TTTSFAILVHALVQNKLFWPANSLLHTLLLR---GSDPKFVFEKFLESHKQCKFSSTLGF 151

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D L+  Y+    + DA+   RL+  +      R    +++ ++R     +    + E ++
Sbjct: 152 DFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVN 211

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P  Y  + ++  LC+      A+             + V++N LI+G CK   + E
Sbjct: 212 AGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLE 271

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              ++  +   G++ DV TY  L+ G C+  + DD   L++EM E G  P +   + L+D
Sbjct: 272 ALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVD 331

Query: 243 GHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNP 273
           G  K G ID A                              D+ +A  +   M +  L  
Sbjct: 332 GLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPL 391

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           + +TY+IL+D FCK G L+ A      MI+ GI      + +LI+G C+ G +  AE + 
Sbjct: 392 NDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLY 451

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            +M+  GL+P   T+T +I  +CK+   +  F+L +EM      P+V T+ AL+ GLC  
Sbjct: 452 TKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCST 511

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK-HGNPEDFDKLQS--EKGLVSDYACY 450
            ++  A+ L D M++  + P ++TYN+++EG+CK H   + F+ L+     GLV D   Y
Sbjct: 512 NEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTY 571

Query: 451 TSLVS 455
             L+S
Sbjct: 572 RPLIS 576



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 174/344 (50%), Gaps = 30/344 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+ +   +PSVY F  L++ LC   ++ +A  +FDE  +R +  T V++N +I G+C
Sbjct: 485 LYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYC 544

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA N+D+ F L   M  +G+ PD YTY  LI+GLC   R+  A+  + ++ ++ L  N++
Sbjct: 545 KAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEM 604

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
            ++ L+ G+C  GR+  A                              DMK    ++ +M
Sbjct: 605 CYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKM 664

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL PD + YT ++D + KEG  + + +    M+      + V +TA ++G C+ G++
Sbjct: 665 YDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEI 724

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A  +  +ML   + P+  TY   +D   K G+ K    L  EM   G L    TYN L
Sbjct: 725 DRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNIL 783

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           + G CK G+L  A  +L  M + G+ PD ITY+ ++  HC+ G+
Sbjct: 784 IRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGD 827



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 16/307 (5%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           ++ L+H  C +G++ +A     E  +RG++   V    LI+G  K +++   F L   M 
Sbjct: 606 YSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMY 665

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+RPD   Y+++I+   KE     +   L  M      PN V +T  ++G CK G ID
Sbjct: 666 DQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEID 725

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            AG + E      +M T  ++P+ +TY   LD   KEG+++ A D+  EM+K G+  +  
Sbjct: 726 RAGHLFE------KMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTA 778

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI GFC+ G+++EA ++L EM + G+ PD  TY+ +I   C++GD      L   M
Sbjct: 779 TYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTM 838

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY---------NILL 422
              G  P    +N L+ G C +G L  A  L + ML  G+ P  I           N L+
Sbjct: 839 LRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLM 898

Query: 423 EGHCKHG 429
            G C  G
Sbjct: 899 HGGCVTG 905



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 169/334 (50%), Gaps = 14/334 (4%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEF---GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           N L+H L   G   D + VF++F    K+   ++ + F+ L++ + +   + +   +  +
Sbjct: 116 NSLLHTLLLRGS--DPKFVFEKFLESHKQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRL 173

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M G+ + P+V T SA++NGL +  +      +  E    G+ P+    + +I   C+   
Sbjct: 174 MLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCE--- 230

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                D   A++ +  M +N  +   +TY +L+ G CK G +  AL++RK + ++G++ D
Sbjct: 231 ---LKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKED 287

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  L+ GFCR  +  +   ++ EM+++G  P +A  + ++D   K G+  + + L+ 
Sbjct: 288 VVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVV 347

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           ++   G LP +  YNAL+N LCK   L  A +L   M  + +  +D+TY+IL++  CK G
Sbjct: 348 KLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRG 407

Query: 430 N---PEDFDKLQSEKGLVSDYACYTSLVSKSSKY 460
                E +     E G+      Y SL++   K+
Sbjct: 408 MLDVAESYFGRMIEDGIRETIYPYNSLINGHCKF 441



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 157/358 (43%), Gaps = 16/358 (4%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G  S+A  F   L  +   L  +   AL+  Y   G L +A+     + +    +     
Sbjct: 582 GRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCH 641

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             LID  M+        G   ++ D G  P   ++  ++    KEG  K +    D    
Sbjct: 642 AVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVT 701

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
                  V++   +NG CK   +D    L   M  + + P+  TY   ++ L KE  + +
Sbjct: 702 EKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKE 761

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  L HEM  +GL  N   +  LI G CK GR      + EA K++ EM  NG+ PD IT
Sbjct: 762 ATDLHHEML-KGLLANTATYNILIRGFCKLGR------LIEATKVLSEMTENGIFPDCIT 814

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y+ ++   C+ GD+ +A+++   M+++G+E D+VAF  LI G C  G + +A  +  +ML
Sbjct: 815 YSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDML 874

Query: 338 KVGLKP---------DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             GLKP         D      ++   C  G+  T  RL   M +     ++E +  L
Sbjct: 875 SRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTRAVKLSLEMWKCL 932


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 177/312 (56%), Gaps = 6/312 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   FN+L+   CK+  +  A  VF E  ++G+    V++N+LING C    ++E 
Sbjct: 231 GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEA 290

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L+  M  S ++P++ T++AL+NG CK   +  A  L  +M ++G+TPN   +  LID 
Sbjct: 291 TALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDA 350

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK+       +M++A  +   M   G+ PD  TY  L+ G C++GDLE+A ++  EM  
Sbjct: 351 YCKDE------NMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT 404

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + ++ D + +  LI   C  G++ +A R+L EM + GLKP   TY  +ID +CK G+ + 
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRA 464

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +M   G L  V TYN L+ G CK  +L++AN LL+ ML+ G++P+ +TY I+ E
Sbjct: 465 ALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTE 524

Query: 424 GHCKHGNPEDFD 435
              + G   D +
Sbjct: 525 EMMEKGFVPDIE 536



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 180/333 (54%), Gaps = 12/333 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKD---AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           G S +V  +N L+   CK GKI     A  +  E    G+    V+FN LI+G CK KN+
Sbjct: 193 GVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNV 252

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
               ++ + M   G++P+V TY++LINGLC   ++++A  L  +M    L PN +    L
Sbjct: 253 SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNAL 312

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ++G CKN  +  AG++       D+M   G+ P+  TY IL+D +CK+ ++E A  + + 
Sbjct: 313 LNGFCKNKMVKQAGEL------FDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRI 366

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+ +G+  D   +  LI+G CR G +  A  ++ EM    LK D  TY ++ID  C  G+
Sbjct: 367 MLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGE 426

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            K   RLL EM   G  P+  TYN +++G CK G L+ A  L   M  +G + +  TYN+
Sbjct: 427 MKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNV 486

Query: 421 LLEGHCKHGNPEDFDKLQS---EKGLVSDYACY 450
           L++G CK    ED + L +   EKGL+ +   Y
Sbjct: 487 LIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTY 519



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 184/349 (52%), Gaps = 14/349 (4%)

Query: 114 LGF--YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           LGF  +    DYG   SV   N LM  L K G+I D + V+ E  +R +  T +SFN +I
Sbjct: 111 LGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVI 170

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD---DAELLLHEMCER 228
           NG CK   L++   +   M+  G+  +V TY+ LI+G CK  ++     A+ +L EM   
Sbjct: 171 NGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRAD 230

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G+ PN+V F  LIDG CK+  +        A K+  EM   G+ P+ +TY  L++G C  
Sbjct: 231 GICPNEVTFNILIDGFCKDKNVS------AAMKVFAEMNRQGVKPNVVTYNSLINGLCNN 284

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G +  A  +R +M+   ++ + +   AL++GFC+   V +A  +  +M K G+ P+  TY
Sbjct: 285 GKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            ++ID +CK+ + +  F L + M   G  P V TYN L+ GLC+ G L+ A  L+  M  
Sbjct: 345 NILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT 404

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             +  D ITYNIL++  C  G  +   +L  E   KGL      Y +++
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMI 453



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 161/326 (49%), Gaps = 29/326 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +    +  +  + E+   G  P+V  +N L++ LC  GK+ +A  + D+     
Sbjct: 242 LIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC 301

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    ++ N L+NG CK K + +   L   M   G+ P+V TY+ LI+  CK+  ++DA 
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M  +G+ P+   +  LI G C+       GD++ AR +V EM T  L  D ITY 
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCR------KGDLEAARNLVSEMDTKHLKADLITYN 415

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+D  C +G+++ AL +  EM ++G++   + +  +I G+C+ G +  A  +  +M KV
Sbjct: 416 ILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKV 475

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G   + ATY ++I  FCK    +    LL EM   G +P   TY                
Sbjct: 476 GRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTY---------------- 519

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGH 425
            ++ + M++ G VPD       +EGH
Sbjct: 520 EIVTEEMMEKGFVPD-------IEGH 538



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 154/300 (51%), Gaps = 12/300 (4%)

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           A ++  + L+  + K      GF         G++  V + + L++GL K   + D E +
Sbjct: 91  ANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFV 150

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
             EM  R + P  + F  +I+G CK G+++ AGD      I+++M   G++ + ITY  L
Sbjct: 151 YKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGD------IIEDMKVRGVSANVITYNTL 204

Query: 282 LDGFCKEGDLE---SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           +DG+CK G +     A  I KEM   GI  + V F  LI GFC+   V  A ++  EM +
Sbjct: 205 IDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNR 264

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G+KP+  TY  +I+  C NG       L  +M +    P + T+NAL+NG CK+  +K 
Sbjct: 265 QGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQ 324

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVS 455
           A  L D M   G+ P+  TYNIL++ +CK  N ED     ++   KG+  D + Y  L++
Sbjct: 325 AGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIA 384



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 11/198 (5%)

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D  C N +  D     IL+  + K        +  K     G++L   +   L+SG  + 
Sbjct: 87  DSFCANSIIVD-----ILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKV 141

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G++ + E + +EM++  ++P   ++ +VI+  CK G       ++++M+  G    V TY
Sbjct: 142 GEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITY 201

Query: 384 NALMNGLCKHGQLK---NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N L++G CK G++     A+ +L  M   G+ P+++T+NIL++G CK  N     K+ +E
Sbjct: 202 NTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAE 261

Query: 441 ---KGLVSDYACYTSLVS 455
              +G+  +   Y SL++
Sbjct: 262 MNRQGVKPNVVTYNSLIN 279


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 223/454 (49%), Gaps = 11/454 (2%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILET-RGTHLPGLVLD 63
           ++  Y  +VH L   K   +A   L  LI   K    +  +F ++L   +  +   ++ D
Sbjct: 124 SIQNYCFLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDVFQTLLFCCQDCNWDPVIFD 183

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            L+  YV  G + +    FR + +         C CL++ +++ N        Y E+   
Sbjct: 184 MLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARV 243

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y FN+L H  C++G +       +   + G     V++NTLI+ +C+   LD+ 
Sbjct: 244 GIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDA 303

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L  +M    + PD+ +Y+AL+NGLCKE ++ +A  L H M  RGL P+ V F TLI G
Sbjct: 304 FYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICG 363

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G+      M+E+R ++ EM  +G+ PDK+T  +L++G+ KE  + SAL++  E+ +
Sbjct: 364 YCKEGK------MRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELER 417

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+ +    +  L+   C  G+   A+ +L+ + + G  P    Y  +I+  CK+     
Sbjct: 418 FGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIAD 477

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +  EM      P+  TY AL+  LC+  +   A  L++ ML  G++PD      L+ 
Sbjct: 478 ALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMH 537

Query: 424 GHCKH---GNPEDFDKLQSEKGLVSDYACYTSLV 454
            +CK    G  E   +  +++  + D   Y +LV
Sbjct: 538 VYCKERDIGKAETLLQTFAKEFQIFDSESYNTLV 571



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 166/375 (44%), Gaps = 60/375 (16%)

Query: 122 DYGYSPSVYVFNVLMH-------------------KLCKE-------------------- 142
           D G  PS+  +  L+H                   KL K+                    
Sbjct: 118 DLGLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDVFQTLLFCCQDCNW 177

Query: 143 ---------------GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
                          G IK+    F +  + G   + +S N L+NG  K   +D+ +++ 
Sbjct: 178 DPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVY 237

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+ P+ YT++ L +  C++  +D     L  M E G  P+ V + TLI  +C+ 
Sbjct: 238 KEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRK 297

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR+D      +A  +   M    + PD ++YT L++G CKEG +  A  +   MI RG+ 
Sbjct: 298 GRLD------DAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLN 351

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V+F  LI G+C+ GK+ E+  +L EM+  G+ PD  T  ++I+ + K     +   L
Sbjct: 352 PDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNL 411

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           + E+   G   + + Y+ LM  +C+ G+   A  LL  +   G VP    YN L+E  CK
Sbjct: 412 VVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCK 471

Query: 428 HGNPEDFDKLQSEKG 442
             +  D   ++SE G
Sbjct: 472 SDSIADALLVKSEMG 486



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 144/327 (44%), Gaps = 43/327 (13%)

Query: 115 GFYLEILDYGYS--PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            FYL  + Y  +  P +  +  LM+ LCKEGK+++A  +F     RGL+   VSFNTLI 
Sbjct: 303 AFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLIC 362

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING------------------------ 208
           G+CK   + E   L   M GSG+ PD  T   LI G                        
Sbjct: 363 GYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPI 422

Query: 209 -----------LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
                      +C+E R   A+ LL  + +RG  P   I+  LI+  CK+  I       
Sbjct: 423 STDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSI------A 476

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A  +  EM    + P  ITY  L+   C+      A  + +EM++ G+  D     AL+
Sbjct: 477 DALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALM 536

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
             +C+   + +AE +L+   K     D  +Y  ++  +C++ D      L   M   G  
Sbjct: 537 HVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGFA 596

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLD 404
           P ++T+  +++GL K   ++   +LL+
Sbjct: 597 PNIQTFRQMIHGLWKAMAVEKDKLLLE 623


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 252/507 (49%), Gaps = 50/507 (9%)

Query: 2   HFRLTLHAYSTMVHFLV----AHKMH-----SQARDLLHLIVSKKGMGSSASLFASILET 52
           +++  L AY T++  L     + K+H     ++ R L +      G+    ++ AS+++ 
Sbjct: 86  YYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTVIASLVDD 145

Query: 53  -------RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105
                            D L  VY D     +A++ F  + K  F I  R C   +  + 
Sbjct: 146 ACNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALR 205

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R       L F+  +++     +VY   +++  LCK G ++  + + DE   +G+ A  V
Sbjct: 206 RGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVV 265

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N  I G+ K  +L     + ++ME  G+  +V TY+ LI+G     ++++A+ L  EM
Sbjct: 266 TYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEM 325

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDM 256
            E+G+  +  ++T++I  +C++G +  A                             G M
Sbjct: 326 REKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQM 385

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           + A+ +V+EM   G++ + + +  L+DG+C+ G ++ AL ++  M K+G+E D  A+ ++
Sbjct: 386 EAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSI 445

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
            SG C+  +  EA+ +L  M++ G+ P+  ++T +ID +CK G+     R+ +EM   G+
Sbjct: 446 ASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGN 505

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--- 433
           +P + TYN L++G  K G +K A+ L D + + G++PD  T   L+ G C  G  +    
Sbjct: 506 VPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALK 565

Query: 434 -FDKLQSEKGLVSDYACYTSLVSKSSK 459
            FD++  ++GLV +   YT+++S  SK
Sbjct: 566 LFDEM-PQRGLVPNVVTYTAMISGLSK 591



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 194/349 (55%), Gaps = 18/349 (5%)

Query: 48  SILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH------YFRIPARGCRCLI 101
           +++E  G     +    L+  + ++G +++A + F  +R+       Y       C C  
Sbjct: 288 TLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 347

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
             + R       L  + E+ D G  PS + +  L+H +CK G+++ AQM+ +E   +G+ 
Sbjct: 348 GNVKRA------LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGID 401

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
              V FNTLI+G+C++  +DE  RL+ VME  G+  DV+ Y+++ +GLCK NR D+A+ L
Sbjct: 402 LNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGL 461

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L  M ERG++PN + FTTLID +CK G      +  EA+++  EM   G  P+ ITY +L
Sbjct: 462 LFSMVERGVSPNTMSFTTLIDIYCKEG------NFVEAKRVFREMEEKGNVPNIITYNVL 515

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DG+ K G+++ A  ++ E+  RG+  D    T+LI G C  GKV  A ++  EM + GL
Sbjct: 516 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 575

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            P+  TYT +I    K+G ++  F+L  EM+  G  P    Y++L+  L
Sbjct: 576 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624



 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 204/379 (53%), Gaps = 16/379 (4%)

Query: 86  RKHYFRIPARGCRCLI---DRMMRTNLPTVTLGFYLEILDY----GYSPSVYVFNVLMHK 138
           RK    + A+G +  +   +  +      + LG   EIL      G + +V  + +L+H 
Sbjct: 249 RKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHG 308

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
               GKI++AQ +F+E  ++G+ A    + ++I+ +C++ N+     L   M   G+ P 
Sbjct: 309 FSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPS 368

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
            +TY ALI+G+CK  +++ A++L++EM  +G+  N VIF TLIDG+C++G +D      E
Sbjct: 369 AHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVD------E 422

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A ++   M   GL  D   Y  +  G CK    + A  +   M++RG+  + ++FT LI 
Sbjct: 423 ALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID 482

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            +C+ G  VEA+R+ REM + G  P+  TY ++ID + K G+ K   +L  E+ + G +P
Sbjct: 483 IYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIP 542

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL- 437
            V T  +L++G C  G++  A  L D M   G+VP+ +TY  ++ G  K G  E+  KL 
Sbjct: 543 DVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLY 602

Query: 438 --QSEKGLVSDYACYTSLV 454
               E GL  D   Y+SLV
Sbjct: 603 DEMKETGLTPDDTVYSSLV 621



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 181/395 (45%), Gaps = 31/395 (7%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRT----------NLPTVTLGFYLEILDYGYSPSVYV 131
           F  +RK+Y++   R    LI ++ R+              +   F    +D G    V V
Sbjct: 79  FHFIRKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTV 138

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
              L+   C E K   A+   ++F           F+ L   +   K   E       ME
Sbjct: 139 IASLVDDACNESKCNRAKFK-EKF-----------FDLLFRVYADNKMFGEALEAFEHME 186

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G   D  +    +  L +  ++D        M    +       T ++DG CK G ++
Sbjct: 187 KKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVE 246

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           M       RK++DE+   G+  + +TY   ++G+ K  DL    +I   M K G+  + V
Sbjct: 247 MG------RKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVV 300

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LI GF   GK+ EA+R+  EM + G++ D   YT +I C C++G+ K    L  EM
Sbjct: 301 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 360

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G +P+  TY AL++G+CK GQ++ A ML++ M   G+  + + +N L++G+C+ G  
Sbjct: 361 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMV 420

Query: 432 EDFDKLQ---SEKGLVSDYACYTSLVSKSSKYRQK 463
           ++  +LQ    +KGL SD   Y S+ S   K  +K
Sbjct: 421 DEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRK 455



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 137/270 (50%), Gaps = 7/270 (2%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           V K G   +A +  + ++ +G  L  ++ + L+  Y + G +D+A++   ++ K      
Sbjct: 379 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 438

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 +   + + N      G    +++ G SP+   F  L+   CKEG   +A+ VF 
Sbjct: 439 VFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFR 498

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E  ++G     +++N LI+G+ K  N+ E  +LK  +E  G+ PDVYT ++LI+G C + 
Sbjct: 499 EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDG 558

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           ++D A  L  EM +RGL PN V +T +I G  K+GR +      EA K+ DEM   GL P
Sbjct: 559 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE------EAFKLYDEMKETGLTP 612

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIK 303
           D   Y+ L+ G     D   ++ I+   +K
Sbjct: 613 DDTVYSSLV-GSLHSADESISMQIQGSQVK 641


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 192/360 (53%), Gaps = 11/360 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + R N     +  + ++   G  P V  F  L++ +C EGKIK A  +++E  + G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +S+NTLING C + N +    +   ME +G +P+V TY+ +I+ LCK+  ++DA 
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAM 253

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             L EM  RG+ P+ + + +++ G C        G + EA ++   M  NG  PD +TY 
Sbjct: 254 DFLSEMVGRGIPPDAITYNSIVHGLC------CLGQLNEATRLFKRMEQNGCKPDVVTYN 307

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           I++D   K+  +  A D   EM+ +GI  D V +T ++ G C  G++ EA R+ ++M + 
Sbjct: 308 IIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQK 367

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G KPD   Y  +ID  CK+         L EM   G  P   TY+ +++G C  GQL  A
Sbjct: 368 GCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEA 427

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             L   M+   V+P+ +T++IL++G C+ G   +    F+ + +EKG+  +   Y +L++
Sbjct: 428 TQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETM-TEKGVEPNIYTYNALMN 486



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 183/334 (54%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N+++  L K+  + DA     E   +G+    V++ T+++G C    L+E 
Sbjct: 298 GCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEA 357

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL   ME  G +PDV  Y+ +I+ LCK+  ++DA   L EM +RG+ PN V ++T++ G
Sbjct: 358 IRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHG 417

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C  G++D      EA ++  EM    + P+ +T++IL+DG C+EG +  A  + + M +
Sbjct: 418 FCNLGQLD------EATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTE 471

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+E +   + AL++G+C   K+ EA ++   M+  G  PD  +Y ++I+ +C +     
Sbjct: 472 KGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDK 531

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL +M      P   TYN +M GLC  G+L +A  L   M   G++P  +TY+ILL 
Sbjct: 532 AKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLN 591

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           G CKHG+ ++  KL     EK L  D   YT L+
Sbjct: 592 GLCKHGHLDEALKLFKSMKEKKLEPDIILYTILI 625



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/437 (29%), Positives = 217/437 (49%), Gaps = 29/437 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++  L   ++ + A D L  +V + G+   A  + SI+        GL        
Sbjct: 235 TYNTIIDSLCKDRLVNDAMDFLSEMVGR-GIPPDAITYNSIVH-------GLCC------ 280

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
              LG L++A + F+ + ++  +        +ID + +  L      F  E++D G  P 
Sbjct: 281 ---LGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPD 337

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  ++H LC  G++ +A  +F +  ++G     V++NT+I+  CK + +++     S
Sbjct: 338 VVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLS 397

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ P+  TYS +++G C   +LD+A  L  EM  R + PN + F+ L+DG C+ G
Sbjct: 398 EMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEG 457

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            +       EAR + + M   G+ P+  TY  L++G+C    +  A  + + M+ +G   
Sbjct: 458 MVS------EARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAP 511

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D  ++  LI+G+C   ++ +A+ +L +M    L P+  TY  ++   C  G       L 
Sbjct: 512 DLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELF 571

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           K+M S G LP + TY+ L+NGLCKHG L  A  L  +M +  + PD I Y IL+EG    
Sbjct: 572 KKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIG 631

Query: 429 GNPEDFDKLQSEKGLVS 445
           G      KL+  KGL S
Sbjct: 632 G------KLEVAKGLFS 642



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 176/316 (55%), Gaps = 9/316 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N ++  LCK+  + DA     E   RG+   A+++N++++G C    L+E 
Sbjct: 228 GCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEA 287

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL   ME +G +PDV TY+ +I+ L K+  ++DA   L EM ++G+ P+ V +TT++ G
Sbjct: 288 TRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHG 347

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C  G+++      EA ++  +M   G  PD + Y  ++D  CK+  +  A++   EM+ 
Sbjct: 348 LCYLGQLN------EAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVD 401

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RGI  + V ++ ++ GFC  G++ EA ++ +EM+   + P+  T+++++D  C+ G    
Sbjct: 402 RGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSE 461

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + + M   G  P + TYNALMNG C   ++  A  + + M+  G  PD  +YNIL+ 
Sbjct: 462 ARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILIN 521

Query: 424 GHCKHGNPEDFDKLQS 439
           G+C   N    DK ++
Sbjct: 522 GYC---NSRRMDKAKA 534



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 165/331 (49%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F   +  + K  +      + ++    G+  T  S N LIN  C+  ++D    +
Sbjct: 91  PSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSV 150

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G++PDV T++ LING+C E ++  A  L +EM   G  P+ + + TLI+G C 
Sbjct: 151 WGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCN 210

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G  +M      A  +  +M  NG  P+ +TY  ++D  CK+  +  A+D   EM+ RGI
Sbjct: 211 SGNTNM------AVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGI 264

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D + + +++ G C  G++ EA R+ + M + G KPD  TY ++ID   K+        
Sbjct: 265 PPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAAD 324

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L EM   G  P V TY  +++GLC  GQL  A  L   M   G  PD + YN +++  C
Sbjct: 325 FLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLC 384

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K     D  +  SE   +G+  +   Y++++
Sbjct: 385 KDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 186/368 (50%), Gaps = 58/368 (15%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           AY+T++  L   ++ + A + L  +V + G+  +A  +++IL                  
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDR-GIPPNAVTYSTILHG---------------- 417

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           + +LG LD+A Q F+                                   E++     P+
Sbjct: 418 FCNLGQLDEATQLFK-----------------------------------EMVGRNVMPN 442

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
              F++L+  LC+EG + +A+ VF+   ++G+     ++N L+NG+C    ++E  ++  
Sbjct: 443 TLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFE 502

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           +M G G  PD+++Y+ LING C   R+D A+ LL +M  + LTPN V + T++ G C  G
Sbjct: 503 IMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVG 562

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R      + +A+++  +MC++G+ P  +TY+ILL+G CK G L+ AL + K M ++ +E 
Sbjct: 563 R------LLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEP 616

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D + +T LI G   GGK+  A+ +  ++   G++P   TY ++I    K G +   + L 
Sbjct: 617 DIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676

Query: 369 KEMRSDGH 376
           ++ +   H
Sbjct: 677 RKWKMMKH 684



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 11/321 (3%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   F    +     + V F   +    K K       L + M+  G+   VY+ + 
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN LC+ N +D A  +  +M + G+ P+ + FTTLI+G C  G+I      K A ++ +
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKI------KVAVELYN 187

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM  +G  PD I+Y  L++G C  G+   A+ + K+M + G + + V +  +I   C+  
Sbjct: 188 EMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDR 247

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            V +A   L EM+  G+ PD  TY  ++   C  G      RL K M  +G  P V TYN
Sbjct: 248 LVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYN 307

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSE 440
            +++ L K   + +A   L  M+D G+ PD +TY  +L G C  G   +    F K++ +
Sbjct: 308 IIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKME-Q 366

Query: 441 KGLVSDYACYTSLVSKSSKYR 461
           KG   D   Y +++    K R
Sbjct: 367 KGCKPDVVAYNTIIDSLCKDR 387


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 185/339 (54%), Gaps = 30/339 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G++P+V+ +N ++H  CK  ++++A  + ++   RG     VS+ T+ING CK  
Sbjct: 69  EMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLD 128

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  R+   M   G +P+V TY  L++G C+   LD A  L+ +M ERG  PN + + 
Sbjct: 129 QVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYN 188

Query: 239 TLIDGHCKNGRIDMA------------------------------GDMKEARKIVDEMCT 268
            ++ G C   ++D A                              G + +A ++V+ M +
Sbjct: 189 NIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVS 248

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G +P+ +TY+ LL G CK G L+ A  + + M + G   + V +  +I G C+ G++ E
Sbjct: 249 KGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDE 308

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L EM+  G +P+  TYT+++D FCK G  +    L++ M   G++P + TYN+L++
Sbjct: 309 AYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD 368

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             CK  +++ A  LL +M+  G VP+ ++YN ++ G CK
Sbjct: 369 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 407



 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 232/471 (49%), Gaps = 30/471 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------------- 51
           +  YST+V  LV       A  L+  +VSK G   +   ++S+L                
Sbjct: 220 VFTYSTIVDSLVKSGKVDDACRLVEAMVSK-GCSPNVVTYSSLLHGLCKAGKLDEATALL 278

Query: 52  ---TRGTHLPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
              TR    P +V  + ++  +  LG +D+A      +     +        L+D   + 
Sbjct: 279 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 338

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                 +G    +++ GY P+++ +N L+   CK+ +++ A  +     ++G     VS+
Sbjct: 339 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 398

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           NT+I G CKA  + EG  L   M  +   PD+ T++ +I+ +CK  R+D A  L + + E
Sbjct: 399 NTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQE 458

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYTILLDGFC 286
            G TPN V + +L+ G CK+ R D      +A  ++ EM    G +PD ITY  ++DG C
Sbjct: 459 SGCTPNLVTYNSLVHGLCKSRRFD------QAEYLLREMTRKQGCSPDIITYNTVIDGLC 512

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K   ++ A  +  +M+  G+  D+V ++ +IS  C+   + EA  +L  MLK G  P   
Sbjct: 513 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 572

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           TY  +ID FCK G+      +L+ + S G  P V T++  ++ L K G+L+ A  LL+TM
Sbjct: 573 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 632

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           L  G+VPD +TYN LL+G C     E   D  ++  + G   D A YT+LV
Sbjct: 633 LRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 178/332 (53%), Gaps = 10/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +N +++ L K  ++ DA  + +E    G      S+NT+++G CKA  ++    L
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PDV +Y+ +INGLCK +++D+A  ++ +M +RG  PN + + TL+DG C+
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 161

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG- 305
                  GD+  A ++V +M   G  P+ ITY  ++ G C    L+SAL + KEM + G 
Sbjct: 162 ------VGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGS 215

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D   ++ ++    + GKV +A R++  M+  G  P+  TY+ ++   CK G      
Sbjct: 216 CPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEAT 275

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL+ M   G  P + TYN +++G CK G++  A  LL+ M+D G  P+ +TY +LL+  
Sbjct: 276 ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 335

Query: 426 CKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           CK G  ED     ++  EKG V +   Y SL+
Sbjct: 336 CKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL 367



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 159/310 (51%), Gaps = 30/310 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            ++  G  P+V  +N ++  LCK  K+ +  ++ ++          V+FNT+I+  CK  
Sbjct: 385 SMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTY 444

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIF 237
            +D  + L ++++ SG  P++ TY++L++GLCK  R D AE LL EM  ++G +P+ + +
Sbjct: 445 RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 504

Query: 238 TTLIDGHCKNGRID-------------MAGD----------------MKEARKIVDEMCT 268
            T+IDG CK+ R+D             +A D                M EA  +++ M  
Sbjct: 505 NTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 564

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           NG +P  ITY  L+DGFCK G+L+ AL+I + ++ +G   D V F+  I    + G++ +
Sbjct: 565 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQ 624

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L  ML+ GL PD  TY  ++  FC    T+    L + MR  G  P   TY  L+ 
Sbjct: 625 AGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVG 684

Query: 389 GLCKHGQLKN 398
            L      K+
Sbjct: 685 HLVDKKSYKD 694



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  +GL  +  +  +++ G C       AG   +A     EM +    PD +TY  +++G
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCD------AGQCSDAVLHFREM-SKTCPPDSVTYNTMING 53

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
             K   L+ A+ + +EM+  G   +  ++  ++ GFC+  +V  A  +L +M+  G  PD
Sbjct: 54  LSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD 113

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             +YT VI+  CK        R++ +M   G  P V TY  L++G C+ G L  A  L+ 
Sbjct: 114 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 173

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPED-----FDKLQSEKGLVSDYACYTSLV 454
            M + G  P+ ITYN ++ G C  G   D     F +++       D   Y+++V
Sbjct: 174 KMTERGYRPNAITYNNIMHGLCS-GRKLDSALQLFKEMEESGSCPPDVFTYSTIV 227



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 19/230 (8%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------TRGTHL- 57
           L  Y+++VH L   +   QA  LL  +  K+G       + ++++         R   L 
Sbjct: 465 LVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLF 524

Query: 58  -----PGLVLDALMIVYV-----DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
                 GL  D +    V        F+D+A     L+ K+ F   A     LID   +T
Sbjct: 525 LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKT 584

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                 L     +L  G  P V  F++ +  L K G+++ A  + +   + GL    V++
Sbjct: 585 GNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTY 644

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           NTL+ G C A   ++   L  VM   G  PD  TY+ L+  L  +    D
Sbjct: 645 NTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKD 694


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 185/335 (55%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  + V+++ LCK G    A ++ ++  +  L    + + T+I+G CK K++D+ 
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDA 275

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M ER + P+   F+ LID 
Sbjct: 276 LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 335

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++P  +TY+ L++GFC    L+ A  + + M+ 
Sbjct: 336 FVKEGK------LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    D V+++ LI GFC+  +V E   + REM + GL  +  TYT +I    + GD   
Sbjct: 390 KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDM 449

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + KEM SDG  P + TYN L++GLCK+G+L+ A ++ + +    + P   TYNI++E
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  D   Y +++S
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMIS 544



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 183/331 (55%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V ++  ++  LCK   + DA  +F E   +G+    V++++LI+  C      +  RL
Sbjct: 254 PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            S M    + PDV+T+SALI+   KE +L +AE L  EM +R + P+ V +++LI+G C 
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + R+D      EA+++ + M +    PD ++Y+ L+ GFCK   ++  +++ +EM +RG+
Sbjct: 374 HDRLD------EAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V +T LI G  + G    A+ + +EM+  G+ P+  TY  ++D  CKNG  +    
Sbjct: 428 VGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + ++     P + TYN ++ G+CK G++++   L   +   GV PD + YN ++ G C
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           + G+ E+ D L     E G + +  CY +L+
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 208/432 (48%), Gaps = 26/432 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE---TRG-THLPGLVLDA 64
            ++T++H L  H   S+A  L+  +V+K G       +  ++     RG T L  ++L+ 
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFILLNK 246

Query: 65  L--------MIVYVDL-------GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +        +++Y  +         +DDA+  F+ +     R        LI  +     
Sbjct: 247 MEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
            +       ++++   +P V+ F+ L+    KEGK+ +A+ ++DE  KR +  + V++++
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 366

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING C    LDE  ++   M      PDV +YS LI G CK  R+D+   L  EM +RG
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRG 426

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L  N V +TTLI G  + G  DM      A++I  EM ++G+ P+ +TY  LLDG CK G
Sbjct: 427 LVGNTVTYTTLIQGLFQAGDCDM------AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            LE A+ + + + +  +E     +  +I G C+ GKV +   +   +   G+KPD   Y 
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I  FC+ G  +    L KEM+ DG LP    YN L+    + G  + +  L+  M   
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 600

Query: 410 GVVPDDITYNIL 421
           G   D  T  ++
Sbjct: 601 GFAGDASTIGLV 612



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 203/384 (52%), Gaps = 11/384 (2%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LDDA+  F  +++   F       + L+  + + N   V +    ++ + G   + Y ++
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSK-LLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++  C+  ++  A  V  +  K G     V+ ++L+NG+C +K + E   L   M  +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G +P+  T++ LI+GL   N+  +A  L+  M  +G  P+ V +  +++G CK G  D+ 
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL- 239

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
                A  ++++M    L P  + YT ++DG CK   ++ AL++ KEM  +GI  + V +
Sbjct: 240 -----AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           ++LIS  C  G+  +A R+L +M++  + PD  T++ +ID F K G      +L  EM  
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P++ TY++L+NG C H +L  A  + + M+     PD ++Y+ L++G CK    ++
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDE 414

Query: 434 FDKL---QSEKGLVSDYACYTSLV 454
             +L    S++GLV +   YT+L+
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLI 438



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 166/328 (50%), Gaps = 6/328 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+   G  P+V  ++ L+  LC  G+  DA  +  +  +R ++    +F+ LI+
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
              K   L E  +L   M    + P + TYS+LING C  +RLD+A+ +   M  +   P
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++TLI G CK  R+D      E  ++  EM   GL  + +TYT L+ G  + GD +
Sbjct: 395 DVVSYSTLIKGFCKAKRVD------EGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCD 448

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A +I KEM+  G+  + + +  L+ G C+ GK+ +A  +   + +  ++P   TY ++I
Sbjct: 449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  CK G  + G+ L   +   G  P V  YN +++G C+ G  + A+ L   M + G +
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE 440
           P+   YN L+    + G+ E   +L  E
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKE 596



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG  ++  D  +A  +  EM  +   P  I ++ LL    K    +  + + ++M   G
Sbjct: 54  RNGLSELKLD--DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG 111

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  ++  ++ LI+ FCR  ++  A  +L +M+K+G +P+  T + +++ +C +       
Sbjct: 112 MPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV 171

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ +M   G+ P   T+N L++GL  H +   A  L+D M+  G  PD +TY +++ G 
Sbjct: 172 ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGL 231

Query: 426 CKHGNPE 432
           CK G+ +
Sbjct: 232 CKRGDTD 238


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 205/396 (51%), Gaps = 31/396 (7%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL------------EILDYGYSPSV 129
            RLLR     +P RGC      +      TV  G Y             E+L     P V
Sbjct: 65  LRLLRS----LPERGCD-----VKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDV 115

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             FN ++H LC++G I ++  +  +  KRG+     + N  I G C+   L+E   L   
Sbjct: 116 ATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVES 175

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+   + PDV TY+ L+ GLCK++++ +A   L  M  +G  P+D  + T+IDG+CK   
Sbjct: 176 MDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKR-- 232

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
            DM   ++EA +++ +    G  PD++TY  L++G C EGD+E AL++  E   + ++ D
Sbjct: 233 -DM---LQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPD 288

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V + +L+ G CR G ++ A +++ EM++ G  PD  TY +VI+  CK G+      ++ 
Sbjct: 289 LVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMN 348

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +    G+LP V T+N +++G CK  +L +A  L++ M   G+ PD ITYN +L G CK G
Sbjct: 349 DAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAG 408

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
             ++ ++   E   KG   +   Y  L+    K  Q
Sbjct: 409 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQ 444



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 11/346 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E +D   +P V  +N LM  LCK+ K+++A         +G      ++NT+I+G+CK 
Sbjct: 173 VESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKR 232

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             L E   L       G  PD  TY +LINGLC E  ++ A  L +E   + L P+ V++
Sbjct: 233 DMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVY 292

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            +L+ G C+ G I        A ++++EM  +G +PD  TY I+++G CK G++  A  +
Sbjct: 293 NSLVKGLCRQGLI------LHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVV 346

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             + I +G   D   F  +I G+C+  K+  A +++  M   G+ PD  TY  V++  CK
Sbjct: 347 MNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCK 406

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  K      +EM   G  P   TYN L+   CK  QL+ A+ ++  M   G+VPD I+
Sbjct: 407 AGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTIS 466

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           +N L+ G C++G+ +     F KL  EKG  +    +  L+   S 
Sbjct: 467 FNTLIHGFCRNGDLDGAYLLFQKLD-EKGYSATADTFNILIGAYSS 511



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 163/307 (53%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P    +  L++ LC EG ++ A  +F+E   + L    V +N+L+ G C+   +   
Sbjct: 249 GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 308

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ + M   G  PD++TY+ +INGLCK   + DA +++++   +G  P+   F T+IDG
Sbjct: 309 LQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDG 368

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D       A ++V+ M   G+ PD ITY  +L+G CK G  +   +  +EMI 
Sbjct: 369 YCKRLKLD------SALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMIL 422

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI  FC+  ++ EA  ++  M + GL PD  ++  +I  FC+NGD   
Sbjct: 423 KGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDG 482

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            + L +++   G+    +T+N L+        ++ A  +   M+  G  PD  TY +L++
Sbjct: 483 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVD 542

Query: 424 GHCKHGN 430
           G CK  N
Sbjct: 543 GSCKAAN 549



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 168/315 (53%), Gaps = 6/315 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + R  L    L    E+++ G  P ++ +N++++ LCK G I DA +V ++   +G
Sbjct: 295 LVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKG 354

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 +FNT+I+G+CK   LD   +L   M   G+ PD  TY++++NGLCK  +  +  
Sbjct: 355 YLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVN 414

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
               EM  +G  PN + +  LI+  CK  +++      EA  ++  M  +GL PD I++ 
Sbjct: 415 ETFEEMILKGCRPNAITYNILIENFCKINQLE------EASGVIVRMSQDGLVPDTISFN 468

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC+ GDL+ A  + +++ ++G       F  LI  +     +  AE++  EM+  
Sbjct: 469 TLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISK 528

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G KPD  TY +++D  CK  +    +  L EM S G +P++ T+  ++N L  + ++  A
Sbjct: 529 GYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEA 588

Query: 400 NMLLDTMLDLGVVPD 414
             ++  M+ +GVVP+
Sbjct: 589 VAIIHIMVRMGVVPE 603



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 12/300 (4%)

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G    A ++N +++        D+  ++   M  +G+ PD  T++  I   C   R   A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL  + ERG     + + T++ G   +G         +AR + DEM    + PD  T+
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGH------GYDARHLFDEMLRRDVFPDVATF 118

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             +L   C++GD+  +  +  +++KRG+ ++       I G C GG++ EA  ++  M  
Sbjct: 119 NNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-D 177

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
             + PD  TY  ++   CK+   +   + L+ M + G +P   TYN +++G CK   L+ 
Sbjct: 178 AYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQE 237

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           A  LL   +  G VPD +TY  L+ G C  G+ E     F++ Q+ K L  D   Y SLV
Sbjct: 238 ATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQA-KDLKPDLVVYNSLV 296



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 44/189 (23%)

Query: 95  RGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           +GCR        LI+   + N      G  + +   G  P    FN L+H  C+ G +  
Sbjct: 423 KGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDG 482

Query: 148 AQMVFDEFGKRGLHATAVSFNTLI-----------------------------------N 172
           A ++F +  ++G  ATA +FN LI                                   +
Sbjct: 483 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVD 542

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CKA N+D  +   + M   G  P + T+  ++N L   +R+ +A  ++H M   G+ P
Sbjct: 543 GSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP 602

Query: 233 N--DVIFTT 239
              D I +T
Sbjct: 603 EVVDTILST 611



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 5/198 (2%)

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  P    Y  ++D        + A  +   M+  G+  D    T  I  FC  G+   A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            R+LR + + G       Y  V+     +G       L  EM      P V T+N +++ 
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL--QSEKGLVSDY 447
           LC+ G +  +  LL  +L  G+  +  T NI + G C+ G  E+   L    +  +  D 
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDV 184

Query: 448 ACYTSL---VSKSSKYRQ 462
             Y +L   + K SK ++
Sbjct: 185 VTYNTLMRGLCKDSKVQE 202


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 250/506 (49%), Gaps = 48/506 (9%)

Query: 2   HFRLTLHAYSTMVHFLV----AHKMH-----SQARDLLHLIVSKKGMGSSASLFASILET 52
           +++  L AY T++  L     + K+H     ++ R L +      G+    ++ AS+++ 
Sbjct: 82  YYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTVIASLVDD 141

Query: 53  -------RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105
                            D L  VY D     +A++ F  + K  F I  R C   +  + 
Sbjct: 142 ACNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALR 201

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R       L F+  +++     +VY   +++  LCK G ++  + + DE   +G+ A  V
Sbjct: 202 RGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVV 261

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N  I G+ K  +L     + ++ME  G+  +V TY+ LI+G     ++++A+ L  EM
Sbjct: 262 TYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEM 321

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRID-----------------------------MAGDM 256
            E+G+  +  ++T++I  +C++G +                               AG M
Sbjct: 322 REKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQM 381

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           + A+ +V+EM   G++ + + +  L+DG+C+ G ++ AL ++  M K+G+E D  A+ ++
Sbjct: 382 EAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSI 441

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
            SG C+  +  EA+ +L  M++ G+ P+  ++T +ID +CK G+     R+ +EM   G+
Sbjct: 442 ASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGN 501

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
           +P + TYN L++G  K G +K A+ L D + + G++PD  T   L+ G C  G  +   K
Sbjct: 502 VPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALK 561

Query: 437 LQSE---KGLVSDYACYTSLVSKSSK 459
           L  E   +GLV +   YT+++S  SK
Sbjct: 562 LFDEMPQRGLVPNVVTYTAMISGLSK 587



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 194/349 (55%), Gaps = 18/349 (5%)

Query: 48  SILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH------YFRIPARGCRCLI 101
           +++E  G     +    L+  + ++G +++A + F  +R+       Y       C C  
Sbjct: 284 TLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 343

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
             + R       L  + E+ D G  PS + +  L+H +CK G+++ AQM+ +E   +G+ 
Sbjct: 344 GNVKRA------LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGID 397

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
              V FNTLI+G+C++  +DE  RL+ VME  G+  DV+ Y+++ +GLCK NR D+A+ L
Sbjct: 398 LNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGL 457

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L  M ERG++PN + FTTLID +CK G      +  EA+++  EM   G  P+ ITY +L
Sbjct: 458 LFSMVERGVSPNTMSFTTLIDIYCKEG------NFVEAKRVFREMEEKGNVPNIITYNVL 511

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DG+ K G+++ A  ++ E+  RG+  D    T+LI G C  GKV  A ++  EM + GL
Sbjct: 512 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 571

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            P+  TYT +I    K+G ++  F+L  EM+  G  P    Y++L+  L
Sbjct: 572 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 620



 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 204/379 (53%), Gaps = 16/379 (4%)

Query: 86  RKHYFRIPARGCRCLI---DRMMRTNLPTVTLGFYLEILDY----GYSPSVYVFNVLMHK 138
           RK    + A+G +  +   +  +      + LG   EIL      G + +V  + +L+H 
Sbjct: 245 RKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHG 304

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
               GKI++AQ +F+E  ++G+ A    + ++I+ +C++ N+     L   M   G+ P 
Sbjct: 305 FSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPS 364

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
            +TY ALI+G+CK  +++ A++L++EM  +G+  N VIF TLIDG+C++G +D      E
Sbjct: 365 AHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVD------E 418

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A ++   M   GL  D   Y  +  G CK    + A  +   M++RG+  + ++FT LI 
Sbjct: 419 ALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID 478

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            +C+ G  VEA+R+ REM + G  P+  TY ++ID + K G+ K   +L  E+ + G +P
Sbjct: 479 IYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIP 538

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL- 437
            V T  +L++G C  G++  A  L D M   G+VP+ +TY  ++ G  K G  E+  KL 
Sbjct: 539 DVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLY 598

Query: 438 --QSEKGLVSDYACYTSLV 454
               E GL  D   Y+SLV
Sbjct: 599 DEMKETGLTPDDTVYSSLV 617



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 181/395 (45%), Gaps = 31/395 (7%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRT----------NLPTVTLGFYLEILDYGYSPSVYV 131
           F  +RK+Y++   R    LI ++ R+              +   F    +D G    V V
Sbjct: 75  FHFIRKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTV 134

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
              L+   C E K   A+   ++F           F+ L   +   K   E       ME
Sbjct: 135 IASLVDDACNESKCNRAKFK-EKF-----------FDLLFRVYADNKMFGEALEAFEHME 182

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G   D  +    +  L +  ++D        M    +       T ++DG CK G ++
Sbjct: 183 KKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVE 242

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           M       RK++DE+   G+  + +TY   ++G+ K  DL    +I   M K G+  + V
Sbjct: 243 MG------RKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVV 296

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LI GF   GK+ EA+R+  EM + G++ D   YT +I C C++G+ K    L  EM
Sbjct: 297 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 356

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G +P+  TY AL++G+CK GQ++ A ML++ M   G+  + + +N L++G+C+ G  
Sbjct: 357 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMV 416

Query: 432 EDFDKLQ---SEKGLVSDYACYTSLVSKSSKYRQK 463
           ++  +LQ    +KGL SD   Y S+ S   K  +K
Sbjct: 417 DEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRK 451



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 133/261 (50%), Gaps = 12/261 (4%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           V K G   +A +  + ++ +G  L  ++ + L+  Y + G +D+A++   ++ K      
Sbjct: 375 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 434

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 +   + + N      G    +++ G SP+   F  L+   CKEG   +A+ VF 
Sbjct: 435 VFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFR 494

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E  ++G     +++N LI+G+ K  N+ E  +LK  +E  G+ PDVYT ++LI+G C + 
Sbjct: 495 EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDG 554

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           ++D A  L  EM +RGL PN V +T +I G  K+GR +      EA K+ DEM   GL P
Sbjct: 555 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE------EAFKLYDEMKETGLTP 608

Query: 274 DKITYTILLDGFCKEGDLESA 294
           D   Y+ L+      G L SA
Sbjct: 609 DDTVYSSLV------GSLHSA 623


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 179/314 (57%), Gaps = 7/314 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++  FN ++H LCK G + +A ++  +  +RG+     ++N  I G C+A  L E  RL
Sbjct: 187 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 246

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    + PDV TY+ LI GLCK++   +A   L  M  +G  P+D  + T+IDG+CK
Sbjct: 247 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 305

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              I M   ++EA +++ +    G  PD++TY  L++G C EGD+E AL++  E   +GI
Sbjct: 306 ---ISM---VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 359

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D V + +L+ G C  G ++ A +++ EM + G  PD  TY +VI+  CK G+      
Sbjct: 360 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 419

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++ +    G+LP V T+N L++G CK  +L +A  L++ M + G+ PD ITYN +L G C
Sbjct: 420 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLC 479

Query: 427 KHGNPEDFDKLQSE 440
           K G   + ++   E
Sbjct: 480 KAGKVNEVNETFQE 493



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P    +  L++ LC EG ++ A  +F+E   +G+    V +N+L+ G C    +   
Sbjct: 323 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 382

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ + M   G  PD+ TY+ +INGLCK   + DA +++++   +G  P+   F TLIDG
Sbjct: 383 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 442

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D       A ++V+ M   G+ PD ITY  +L+G CK G +    +  +EMI 
Sbjct: 443 YCKRLKLD------SALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMIL 496

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI  FCR  K+ EA +++ +M + GL PD  ++  +I  FC+NGD + 
Sbjct: 497 KGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEG 556

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            + L +++   G+    +T+N L+        +  A  + D ML  G   D  TY +L++
Sbjct: 557 AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLID 616

Query: 424 GHCKHGN 430
           G CK  N
Sbjct: 617 GSCKTAN 623



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 164/298 (55%), Gaps = 6/298 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P +  +N++++ LCK G I DA +V ++   +G      +FNTLI+G+CK  
Sbjct: 388 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 447

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD   +L   M   G+ PD  TY++++NGLCK  ++++      EM  +G  PN + + 
Sbjct: 448 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 507

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+  C++ +      M+EA K++ +M   GL+PD +++  L+ GFC+ GDLE A  + 
Sbjct: 508 ILIENFCRSNK------MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 561

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +++ ++G       F  LI  F     +  AE++  EML  G + D  TY ++ID  CK 
Sbjct: 562 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 621

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            +    +  L EM   G +P++ T+  ++N L  + ++  A  ++  M+ +GVVP+ +
Sbjct: 622 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 679



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 170/336 (50%), Gaps = 11/336 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N L+  LCK+   ++A         +G      ++NT+I+G+CK   + E   L
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                  G  PD  TY +LINGLC E  ++ A  L +E   +G+ P+ V++ +L+ G C 
Sbjct: 316 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 375

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G I        A ++++EM   G +PD  TY I+++G CK G++  A  +  + I +G 
Sbjct: 376 QGLI------LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY 429

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   F  LI G+C+  K+  A +++  M + G+ PD  TY  V++  CK G       
Sbjct: 430 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 489

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             +EM   G  P   TYN L+   C+  +++ A+ ++  M   G+ PD +++N L+ G C
Sbjct: 490 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 549

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLVSKSS 458
           ++G+ E     F KL+ EKG  +    + +L+   S
Sbjct: 550 RNGDLEGAYLLFQKLE-EKGYSATADTFNTLIGAFS 584



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 161/377 (42%), Gaps = 64/377 (16%)

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           + G+++DA   F+          A ++N +++    A   D+  ++   M  +G+ PD++
Sbjct: 65  RAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLH 124

Query: 201 T-------------------------------YSALINGLCKENRLDDAELLLHEMCERG 229
           T                               Y  ++ GL       DA  L  +M    
Sbjct: 125 THTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTH 184

Query: 230 LTPNDVIFTTLIDGHCKNG-----------------RIDM------------AGDMKEAR 260
           + PN   F  ++   CK G                  I++            AG + EA 
Sbjct: 185 VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAV 244

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++VD M    + PD +TY  L+ G CK+   + A+   + M+ +G   D+  +  +I G+
Sbjct: 245 RLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGY 303

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+   V EA  +L++ +  G  PD  TY  +I+  C  GD +    L  E ++ G  P +
Sbjct: 304 CKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDI 363

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             YN+L+ GLC  G + +A  +++ M + G  PD  TYNI++ G CK GN  D   + ++
Sbjct: 364 VVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 423

Query: 441 ---KGLVSDYACYTSLV 454
              KG + D   + +L+
Sbjct: 424 AIMKGYLPDVFTFNTLI 440



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 112/260 (43%), Gaps = 22/260 (8%)

Query: 202 YSALINGLCKENRLDDAELLLHEM----CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           Y A I    +  RL DA      M    C       + I   L+D          A    
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVD----------AAYHD 105

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A K+   M   G++PD  T+TI L  FC       AL + + +  RG     VA+  ++
Sbjct: 106 QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA----VAYCTVV 161

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G    G   +A ++  +ML   + P+ A +  V+   CK GD      LL ++   G  
Sbjct: 162 CGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMS 221

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---F 434
             + TYN  + GLC+ G+L  A  L+D M     VPD +TYN L+ G CK   P++   +
Sbjct: 222 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHY 280

Query: 435 DKLQSEKGLVSDYACYTSLV 454
            +    +G + D   Y +++
Sbjct: 281 LRRMMNQGCLPDDFTYNTII 300



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R+N         +++   G  P    FN L++  C+ G ++ A ++F +  ++G
Sbjct: 509 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 568

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             ATA +FNTLI       N+    ++   M   G R D YTY  LI+G CK   +D A 
Sbjct: 569 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 628

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-GDMKEARKI--VDEMCTNGLNPDK- 275
           + L EM ++G  P+   F  +I+    N R+  A G +    KI  V E+    LN DK 
Sbjct: 629 MHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNADKK 688

Query: 276 --ITYTILLDGFCKEGDLE 292
                 IL++   K+G + 
Sbjct: 689 EIAAPKILVEDLMKKGHIS 707


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 200/370 (54%), Gaps = 13/370 (3%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
            ++ + L+  +V  G LDDA      +   Y  +P     C  + ++        +G  L
Sbjct: 347 SVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDV---CTYNSLIYGYWKKGLVGLAL 403

Query: 119 EIL----DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           E+L    + G  P+VY + +L+   CK GKI +A  + +E    GL    V FN LI+  
Sbjct: 404 EVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAF 463

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK   + E   +   M   G +PDVYT+++LI+GLC+ + +  A  LL +M   G+  N 
Sbjct: 464 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT 523

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + TLI+   + G I      KEARK+V+EM   G   D+ITY  L+ G C+ G+++ A
Sbjct: 524 VTYNTLINAFLRRGEI------KEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKA 577

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + ++M++ G+   +++   LI+G CR G V EA    +EM+  G  PD  T+  +I+ 
Sbjct: 578 RSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 637

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+ G  + G  + ++++++G  P   TYN LM+ LCK G + +A +LLD  ++ G VP+
Sbjct: 638 LCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 697

Query: 415 DITYNILLEG 424
           D T++ILL+ 
Sbjct: 698 DRTWSILLQS 707



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 186/336 (55%), Gaps = 14/336 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G++P    +  LM+ LCK G++  A+ +F    K     T+V FNTLI+G      LD+ 
Sbjct: 311 GFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGRLDDA 366

Query: 184 FRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             + S M  S G+ PDV TY++LI G  K+  +  A  +L +M  +G  PN   +T L+D
Sbjct: 367 KAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVD 426

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK G+ID      EA  +++EM  +GL P+ + +  L+  FCKE  +  A++I +EM 
Sbjct: 427 GFCKLGKID------EAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 480

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++G + D   F +LISG C   ++  A  +LR+M+  G+  +  TY  +I+ F + G+ K
Sbjct: 481 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK 540

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +L+ EM   G L    TYN+L+ GLC+ G++  A  L + ML  G+VP  I+ NIL+
Sbjct: 541 EARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILI 600

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            G C+ G  E+  + Q E   +G   D   + SL++
Sbjct: 601 NGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 636



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 178/334 (53%), Gaps = 12/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVF-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           P+  +FN L+H     G++ DA+ V  D     G+     ++N+LI G+ K   +     
Sbjct: 345 PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALE 404

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G +P+VY+Y+ L++G CK  ++D+A  LL+EM   GL PN V F  LI   C
Sbjct: 405 VLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFC 464

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  RI       EA +I  EM   G  PD  T+  L+ G C+  +++ AL + ++MI  G
Sbjct: 465 KEHRI------PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 518

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V +  LI+ F R G++ EA +++ EM+  G   D+ TY  +I   C+ G+     
Sbjct: 519 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKAR 578

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L ++M  DG +P+  + N L+NGLC+ G ++ A      M+  G  PD +T+N L+ G 
Sbjct: 579 SLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 638

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           C+ G  ED    F KLQ+E G+  D   Y +L+S
Sbjct: 639 CRAGRIEDGLTMFRKLQAE-GIPPDTVTYNTLMS 671



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 229/469 (48%), Gaps = 33/469 (7%)

Query: 19  AHKMHSQARDLLHLIVSKKGMGSSASLFASIL---ETRGTHLPGLVLDALMIVYVDLGFL 75
           + K +  + D+  +++ K G          +L   +  G      +  ++M  Y   GF 
Sbjct: 97  SQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFP 156

Query: 76  DDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
               +    +R  Y   P  +    +++ ++  N   V    + ++L     P+++ F V
Sbjct: 157 GQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGV 216

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           +M  LC   ++  A  V  +  K G    +V + TLI+   K   ++E  +L   M   G
Sbjct: 217 VMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMG 276

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA- 253
             PD  T++ +I GLCK +R+++A  +++ M  RG TP+D+ +  L++G CK GR+D A 
Sbjct: 277 CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAK 336

Query: 254 ------------------------GDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKE 288
                                   G + +A+ ++ +M T+ G+ PD  TY  L+ G+ K+
Sbjct: 337 DLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKK 396

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G +  AL++ ++M  +G + +  ++T L+ GFC+ GK+ EA  +L EM   GLKP+   +
Sbjct: 397 GLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGF 456

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +I  FCK         + +EM   G  P V T+N+L++GLC+  ++K+A  LL  M+ 
Sbjct: 457 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 516

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            GVV + +TYN L+    + G  ++  KL +E   +G + D   Y SL+
Sbjct: 517 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLI 565



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 167/310 (53%), Gaps = 6/310 (1%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +  YG  P V  +N L++   K+G +  A  V  +   +G      S+  L++G CK   
Sbjct: 374 VTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK 433

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +DE + L + M   G++P+   ++ LI+  CKE+R+ +A  +  EM  +G  P+   F +
Sbjct: 434 IDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 493

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C+        ++K A  ++ +M + G+  + +TY  L++ F + G+++ A  +  
Sbjct: 494 LISGLCE------VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 547

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ +G  LD + + +LI G CR G+V +A  +  +ML+ GL P   +  ++I+  C++G
Sbjct: 548 EMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSG 607

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +      KEM   G  P + T+N+L+NGLC+ G++++   +   +   G+ PD +TYN
Sbjct: 608 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYN 667

Query: 420 ILLEGHCKHG 429
            L+   CK G
Sbjct: 668 TLMSWLCKGG 677



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 90/161 (55%), Gaps = 6/161 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N L+  LC+ G++  A+ +F++  + GL  +++S N LING C++  ++E    +  M 
Sbjct: 561 YNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMV 620

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  PD+ T+++LINGLC+  R++D   +  ++   G+ P+ V + TL+   CK G + 
Sbjct: 621 LRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFV- 679

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
                 +A  ++DE   +G  P+  T++ILL     +  L+
Sbjct: 680 -----YDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLD 715



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 14/171 (8%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           +G+ L  +  ++L+      G +D A   F  + +      +  C  LI+ + R+ +   
Sbjct: 552 QGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEE 611

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F  E++  G +P +  FN L++ LC+ G+I+D   +F +    G+    V++NTL++
Sbjct: 612 AVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMS 671

Query: 173 GHCKAKN-------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
             CK          LDEG          G  P+  T+S L+  L  +  LD
Sbjct: 672 WLCKGGFVYDACLLLDEGIE-------DGFVPNDRTWSILLQSLVPQETLD 715


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 175/312 (56%), Gaps = 6/312 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P+    N LM  LC EGK+K+A    D+   +G   + +S+  LING CK  
Sbjct: 118 KILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIG 177

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 RL   +E   +RP+V  YS +I+ LCK+  +D+A  L  EM  +G++P+ V ++
Sbjct: 178 ETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYS 237

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+ G C  G+++ A D+      ++EM    +NPD  TYTIL+D  CKEG ++ A ++ 
Sbjct: 238 ILVSGFCIVGQLNRAIDL------LNEMVLENINPDIYTYTILVDALCKEGKVKEAENVL 291

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+K  + LD V ++ L+ G+C   +V  A+R+   M ++G+ PD   Y+++I+  CK 
Sbjct: 292 AVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKI 351

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L +E+     +P   TY +L++ LCK G++     L D MLD G  PD ITY
Sbjct: 352 KRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITY 411

Query: 419 NILLEGHCKHGN 430
           N L++  CK+G+
Sbjct: 412 NNLIDALCKNGH 423



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 183/335 (54%), Gaps = 9/335 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +   P+V ++++++ +LCK+  + +A  ++ E   +G+    V+++ L++G C    L+ 
Sbjct: 192 WSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNR 251

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + M    + PD+YTY+ L++ LCKE ++ +AE +L  M +  +  + V+++TL+D
Sbjct: 252 AIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMD 311

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+C      +  ++  A+++   M   G+ PD   Y+I+++G CK   ++ AL++ +E+ 
Sbjct: 312 GYC------LVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIH 365

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++ +  D V +T+LI   C+ G++     +  EML  G  PD  TY  +ID  CKNG   
Sbjct: 366 QKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLD 425

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L  +M+     P V T+  L++GLCK G+LKNA      +L  G   +  TY +++
Sbjct: 426 RAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMI 485

Query: 423 EGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            G CK G  ++   LQS   + G +SD   +  ++
Sbjct: 486 NGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMI 520



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 194/406 (47%), Gaps = 14/406 (3%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           +G    A  F   +  +G  L G+    L+     +G    AI+  R + +   R     
Sbjct: 141 EGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVI 200

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +IDR+ +  L       Y E++  G SP V  +++L+   C  G++  A  + +E  
Sbjct: 201 YSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMV 260

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
              ++    ++  L++  CK   + E   + +VM  + +  DV  YS L++G C  N ++
Sbjct: 261 LENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVN 320

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A+ + + M + G+TP+   ++ +I+G CK  R+D      EA  + +E+    + PD +
Sbjct: 321 NAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVD------EALNLFEEIHQKNMVPDTV 374

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L+D  CK G +    D+  EM+ RG   D + +  LI   C+ G +  A  +  +M
Sbjct: 375 TYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKM 434

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
               ++P+  T+T+++D  CK G  K      +++ + G+   V TY  ++NGLCK G L
Sbjct: 435 KDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLL 494

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKG 442
             A  L   M D G + D +T+ I++           FDK +++K 
Sbjct: 495 DEALALQSRMEDNGCISDAVTFEIMIRAF--------FDKDENDKA 532



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 151/287 (52%), Gaps = 6/287 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P +Y + +L+  LCKEGK+K+A+ V     K  ++   V ++TL++G+C    ++   R
Sbjct: 265 NPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKR 324

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ PDV+ YS +INGLCK  R+D+A  L  E+ ++ + P+ V +T+LID  C
Sbjct: 325 VFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLC 384

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+GRI    D+       DEM   G  PD ITY  L+D  CK G L+ A+ +  +M  + 
Sbjct: 385 KSGRISYVWDL------FDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQA 438

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  +   FT L+ G C+ G++  A    +++L  G   +  TYT++I+  CK G      
Sbjct: 439 IRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEAL 498

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            L   M  +G +    T+  ++       +   A  L+  M+  G++
Sbjct: 499 ALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGLL 545



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 151/321 (47%), Gaps = 34/321 (10%)

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           FN ++      K       L   ME S + PD +T + +IN  C   ++  A   + ++ 
Sbjct: 61  FNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKIL 120

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMK 257
           + G  PN +   TL+ G C  G++  A                             G+ +
Sbjct: 121 KLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETR 180

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
            A +++  +    + P+ + Y++++D  CK+  ++ A D+  EM+ +GI  D V ++ L+
Sbjct: 181 AAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILV 240

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           SGFC  G++  A  +L EM+   + PD  TYT+++D  CK G  K    +L  M      
Sbjct: 241 SGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVN 300

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---- 433
             V  Y+ LM+G C   ++ NA  +  TM  +GV PD   Y+I++ G CK    ++    
Sbjct: 301 LDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNL 360

Query: 434 FDKLQSEKGLVSDYACYTSLV 454
           F+++  +K +V D   YTSL+
Sbjct: 361 FEEIH-QKNMVPDTVTYTSLI 380



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P  + ++ ++  L    R   A  L  +M    + P+      +I+  C  G++ +A   
Sbjct: 56  PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                 V ++   G  P+ IT   L+ G C EG ++ AL    +++ +G  L  +++  L
Sbjct: 116 ------VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGIL 169

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G C+ G+   A R+LR + +  ++P+   Y+M+ID  CK+      + L  EM   G 
Sbjct: 170 INGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGI 229

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            P V TY+ L++G C  GQL  A  LL+ M+   + PD  TY IL++  CK G
Sbjct: 230 SPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEG 282



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D    P+VY F +L+  LCK G++K+A   F +   +G
Sbjct: 414 LIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKG 473

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++  +ING CK   LDE   L+S ME +G   D  T+  +I     ++  D AE
Sbjct: 474 YCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAE 533

Query: 220 LLLHEMCERGL 230
            L+ EM  RGL
Sbjct: 534 KLVREMIARGL 544


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 177/316 (56%), Gaps = 6/316 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G SP+   F VL++  CK      A  VF+E  ++G+ A+ V++N+LI+G C   
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++EG +L   ME  G+ P+  T+  ++ G CK+  + DA   +  M ER + P+ VI+T
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYT 373

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDG+ + G+++ A  +KEA      M   G++P+  TY  L+ GF + GD  SA  + 
Sbjct: 374 ILIDGYRRLGKMEDAMAVKEA------MAKKGISPNVTTYNCLITGFSRSGDWRSASGLL 427

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM ++GIE D V +  LI   C  G+V +A ++L EM +VGL+P+  TY  +I  FC  
Sbjct: 428 DEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDK 487

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ K+ + +   M        V TYN  +   C+ G++  AN LL+ MLD  +VP+ ITY
Sbjct: 488 GNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547

Query: 419 NILLEGHCKHGNPEDF 434
             + EG  + G   D 
Sbjct: 548 ETIKEGMMEKGYTPDI 563



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 9/308 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK---AKNLDE 182
           SP +Y FN ++  LC+ G+++ A  V  +    GL  +  ++N+LI+G+CK   A N+  
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L   M  +G+ P   T+  LING CK +    A  +  EM ++G+  + V + +LI 
Sbjct: 248 VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLIS 307

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C  G+++      E  K+++EM   GL+P++IT+  +L GFCK+G +  A D    M 
Sbjct: 308 GLCSEGKVE------EGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMT 361

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +R +E D V +T LI G+ R GK+ +A  +   M K G+ P+  TY  +I  F ++GD +
Sbjct: 362 ERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWR 421

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +   LL EM+  G    V TYN L+  LC  G+++ A  LLD M ++G+ P+ +TYN ++
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 423 EGHCKHGN 430
           +G C  GN
Sbjct: 482 QGFCDKGN 489



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 171/336 (50%), Gaps = 12/336 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + PS    N L+  L    ++  A+  F    +R +     +FNT+I+G C+   L +  
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDD---AELLLHEMCERGLTPNDVIFTTLI 241
            +   ++  G+ P V TY++LI+G CK+    +    ++LL EM E G++P  V F  LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CKN       +   A ++ +EM   G+    +TY  L+ G C EG +E  + + +EM
Sbjct: 272 NGYCKNS------NTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM 325

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              G+  + + F  ++ GFC+ G + +A   +  M +  ++PD   YT++ID + + G  
Sbjct: 326 EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKM 385

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    + + M   G  P V TYN L+ G  + G  ++A+ LLD M + G+  D +TYN+L
Sbjct: 386 EDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVL 445

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +   C  G      KL    SE GL  ++  Y +++
Sbjct: 446 IGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 6/295 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   + +     +  + E+   G + SV  +N L+  LC EGK+++   + +E    G
Sbjct: 270 LINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLG 329

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    ++F  ++ G CK   + +       M    + PDV  Y+ LI+G  +  +++DA 
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAM 389

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M ++G++PN   +  LI G  +      +GD + A  ++DEM   G+  D +TY 
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSR------SGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +L+   C +G++  A+ +  EM + G+E +++ +  +I GFC  G +  A  +   M K 
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKC 503

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
             + +  TY + I  FC+ G       LL EM     +P   TY  +  G+ + G
Sbjct: 504 RKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           KKGM + A+ +   +  R    P +V+  ++I  Y  LG ++DA+     + K       
Sbjct: 346 KKGMMADANDWIDGMTERNVE-PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNV 404

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
               CLI    R+       G   E+ + G    V  +NVL+  LC +G+++ A  + DE
Sbjct: 405 TTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDE 464

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             + GL    +++NT+I G C   N+   + +++ ME    R +V TY+  I   C+  +
Sbjct: 465 MSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGK 524

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           +D+A  LL+EM ++ L PN + + T+ +G  + G
Sbjct: 525 MDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 138/492 (28%), Positives = 242/492 (49%), Gaps = 45/492 (9%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPG 59
           +F  +  ++  ++H LV   +   A  LL  ++ + G+     +F ++L+   +   +  
Sbjct: 100 NFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGL-DPREVFEALLDCFEKCDFISS 158

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           L  D L+  YV    + D++  FRL+R+       R    +++ + +     + L  + E
Sbjct: 159 LGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGE 218

Query: 120 ILDYGYSPSVY---------------------------------VFNVLMHKLCKEGKIK 146
           IL  G  P +Y                                 V+NVL+H LCK  ++ 
Sbjct: 219 ILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVW 278

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A  + +   ++GL A+ V++ TL+ G CK +  + G  +   M   G  P     S+L+
Sbjct: 279 EAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLV 338

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
            GL ++ ++ DA  L++ + + G  P+  ++  LI+  CK+G+ D      EA  +  EM
Sbjct: 339 EGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFD------EAELLFKEM 392

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL  + +TY+IL+D FC+ G L++A+    +MI  GI++    + +LI+G C+ G +
Sbjct: 393 GEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNL 452

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A     EM+  GLKP   +YT +I  +C  G     FRL  EM   G  P   T+  L
Sbjct: 453 SAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTL 512

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-EDFDKLQS--EKGL 443
           ++ L +  ++ +A  L D ML+  ++P+++TYN+++EGHCK GN  + F+ L    +KGL
Sbjct: 513 ISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGL 572

Query: 444 VSDYACYTSLVS 455
           V D   Y  L+S
Sbjct: 573 VPDTYTYRPLIS 584



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 192/386 (49%), Gaps = 31/386 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R       + F  +++  G   +VY +N L++  CK G +  A   FDE   +G
Sbjct: 407 LIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG 466

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T VS+ +LI+G+C    L E FRL   M G G+ P+ YT++ LI+ L + NR+ DA 
Sbjct: 467 LKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAF 526

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            L  EM E+ + PN+V +  +I+GHCK G    A                          
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSL 586

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G + EA+K +D++       +++ Y+ LL G+CKEG L  AL + +EM+KRG+++D 
Sbjct: 587 CSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDL 646

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +  LI G  +         +L+ M    L+PD   YT +ID + K G  K  F +   
Sbjct: 647 VCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDI 706

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M  +G  P + TY  L+N LCK G +  A +L   ML     P+ +TY   L+   + G+
Sbjct: 707 MIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGS 766

Query: 431 PEDFDKLQSE--KGLVSDYACYTSLV 454
            E   +L ++  KGL+++   Y  LV
Sbjct: 767 MEKAVQLHNDMLKGLLANTVSYNILV 792



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 190/398 (47%), Gaps = 72/398 (18%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PS++V+N L++ LCK+GK  +A+++F E G++GL A  V+++ LI+  C+   LD  
Sbjct: 361 GAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTA 420

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M  +G++  VY Y++LING CK   L  A     EM ++GL P  V +T+LI G
Sbjct: 421 IHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISG 480

Query: 244 HCKNGRI--------DMAGD---------------------MKEARKIVDEMCTNGLNPD 274
           +C  G++        +M G                      M +A ++ DEM    + P+
Sbjct: 481 YCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPN 540

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML- 333
           ++TY ++++G CKEG+   A ++  +M+++G+  D   +  LIS  C  G+V EA++ + 
Sbjct: 541 EVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFID 600

Query: 334 ----------------------------------REMLKVGLKPDDATYTMVIDCFCKNG 359
                                             REM+K G+  D   Y ++ID   K  
Sbjct: 601 DLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQ 660

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           DT   F LLK M      P    Y ++++G  K G +K A  + D M+D G  P+ +TY 
Sbjct: 661 DTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYT 720

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSD-------YACY 450
            L+   CK G  +  + L  E  LVS+       Y C+
Sbjct: 721 TLINELCKAGLMDKAELLWKEM-LVSNSTPNHVTYCCF 757



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 188/417 (45%), Gaps = 80/417 (19%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+   G +P+ Y F  L+  L +  ++ DA  +FDE  ++ +    V++N +I GHC
Sbjct: 493 LYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHC 552

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTY--------------------------------- 202
           K  N  + F L + M   G+ PD YTY                                 
Sbjct: 553 KEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEM 612

Query: 203 --SALINGLCKENRLDDAELLLHEMCERG------------------------------- 229
             SAL++G CKE RL DA  +  EM +RG                               
Sbjct: 613 CYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM 672

Query: 230 ----LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
               L P+ VI+T++IDG+ K      AG +K+A  I D M   G  P+ +TYT L++  
Sbjct: 673 HDQRLRPDKVIYTSMIDGYSK------AGSVKKAFGIWDIMIDEGCTPNIVTYTTLINEL 726

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK G ++ A  + KEM+      ++V +   +    R G + +A ++  +MLK GL  + 
Sbjct: 727 CKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANT 785

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            +Y +++  FCK G  +   +LL EM  +   P   TY+ ++   C+ G L  A    DT
Sbjct: 786 VSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDT 845

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           ML+ G+ PD + YN L+ G C  G      +L+ +   +G+  + A + SL   +S+
Sbjct: 846 MLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASR 902



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 49/94 (52%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D    P    ++ ++++ C+ G +  A   +D    +GL    +++N LI G C A 
Sbjct: 810 EMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAG 869

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
            L + F L+  M   G++P+  T+ +L +G  ++
Sbjct: 870 ELGKAFELRDDMIRRGVKPNQATHKSLSHGASRK 903


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 198/368 (53%), Gaps = 11/368 (2%)

Query: 92  IPARGCRC--LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
           IP   C C  L++   R +  ++ L F  +++  G+ PS+  F  L++  C+  ++ DA 
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            +FD+    G     V +NT+I+G CK+K +D    L + ME  G+ PDV TY++LI+GL
Sbjct: 172 YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C   R  DA  ++  M +R + P+   F  LID   K GR+       EA +  +EM   
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV------SEAEEFYEEMIRR 285

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            L+PD +TY++L+ G C    L+ A ++   M+ +G   D V ++ LI+G+C+  KV   
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++  EM + G+  +  TYT++I  +C+ G       + + M   G  P + TYN L++G
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LC +G+++ A ++L  M   G+  D +TYNI++ G CK G   D   +      +GL+ D
Sbjct: 406 LCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPD 465

Query: 447 YACYTSLV 454
              YT+++
Sbjct: 466 IWTYTTMM 473



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 29/335 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F+ L+  + K  K      ++++    G+     + N L+N  C+   L      
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  P + T+ +L+NG C+ +R+ DA  +  +M   G  PN VI+ T+IDG CK
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           + ++D A                             G   +A ++V  M    + PD  T
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  L+D   KEG +  A +  +EMI+R ++ D V ++ LI G C   ++ EAE M   M+
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMV 318

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  PD  TY+++I+ +CK+   + G +L  EM   G +    TY  L+ G C+ G+L 
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLN 378

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            A  +   M+  GV P+ ITYN+LL G C +G  E
Sbjct: 379 VAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 149/296 (50%), Gaps = 9/296 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           +   F+ L++   K K  D    L   M+  G+  ++ T + L+N  C+ ++L  A   L
Sbjct: 80  SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFL 139

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M + G  P+ V F +L++G C+  R+       +A  + D+M   G  P+ + Y  ++
Sbjct: 140 GKMIKLGHEPSIVTFGSLLNGFCRGDRV------YDALYMFDQMVGMGYKPNVVIYNTII 193

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK   +++ALD+   M K GI  D V + +LISG C  G+  +A RM+  M K  + 
Sbjct: 194 DGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIY 253

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  T+  +ID   K G         +EM      P + TY+ L+ GLC + +L  A  +
Sbjct: 254 PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEM 313

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
              M+  G  PD +TY+IL+ G+CK    E   KL    S++G+V +   YT L+ 
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQ 369



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 66/111 (59%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  +NVL+H LC  GKI+ A ++  +  K G+ A  V++N +I G CKA  + + 
Sbjct: 391 GVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADA 450

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           + +   +   G+ PD++TY+ ++ GL K+    +A+ L  +M E G+ PN+
Sbjct: 451 WDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNE 501



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 3/190 (1%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P    ++ LL    K    +  + + ++M   GI  +      L++ FCR  ++  A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L +M+K+G +P   T+  +++ FC+         +  +M   G+ P V  YN +++GLCK
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYAC 449
             Q+ NA  LL+ M   G+ PD +TYN L+ G C  G   D  ++ S   ++ +  D   
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258

Query: 450 YTSLVSKSSK 459
           + +L+    K
Sbjct: 259 FNALIDACVK 268



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +  + E+   G   +   + +L+   C+ GK+  A+ +F      G+H   +++N L++G
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C    +++   + + M+ +GM  D+ TY+ +I G+CK   + DA  +   +  +GL P+
Sbjct: 406 LCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPD 465

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
              +TT++ G  K G        +EA  +  +M  +G+ P++
Sbjct: 466 IWTYTTMMLGLYKKGL------RREADALFRKMKEDGILPNE 501


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 179/314 (57%), Gaps = 7/314 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++  FN ++H LCK G + +A ++  +  +RG+     ++N  I G C+A  L E  RL
Sbjct: 184 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 243

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    + PDV TY+ LI GLCK++   +A   L  M  +G  P+D  + T+IDG+CK
Sbjct: 244 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 302

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              I M   ++EA +++ +    G  PD++TY  L++G C EGD+E AL++  E   +GI
Sbjct: 303 ---ISM---VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 356

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D V + +L+ G C  G ++ A +++ EM + G  PD  TY +VI+  CK G+      
Sbjct: 357 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 416

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++ +    G+LP V T+N L++G CK  +L +A  L++ M + G+ PD ITYN +L G C
Sbjct: 417 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLC 476

Query: 427 KHGNPEDFDKLQSE 440
           K G   + ++   E
Sbjct: 477 KAGKVNEVNETFQE 490



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P    +  L++ LC EG ++ A  +F+E   +G+    V +N+L+ G C    +   
Sbjct: 320 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 379

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ + M   G  PD+ TY+ +INGLCK   + DA +++++   +G  P+   F TLIDG
Sbjct: 380 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 439

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D       A ++V+ M   G+ PD ITY  +L+G CK G +    +  +EMI 
Sbjct: 440 YCKRLKLD------SALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMIL 493

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI  FCR  K+ EA +++ +M + GL PD  ++  +I  FC+NGD + 
Sbjct: 494 KGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEG 553

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            + L +++   G+    +T+N L+        +  A  + D ML  G   D  TY +L++
Sbjct: 554 AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLID 613

Query: 424 GHCKHGN 430
           G CK  N
Sbjct: 614 GSCKTAN 620



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 163/296 (55%), Gaps = 6/296 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P +  +N++++ LCK G I DA +V ++   +G      +FNTLI+G+CK  
Sbjct: 385 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 444

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD   +L   M   G+ PD  TY++++NGLCK  ++++      EM  +G  PN + + 
Sbjct: 445 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 504

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+  C++ +      M+EA K++ +M   GL+PD +++  L+ GFC+ GDLE A  + 
Sbjct: 505 ILIENFCRSNK------MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 558

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +++ ++G       F  LI  F     +  AE++  EML  G + D  TY ++ID  CK 
Sbjct: 559 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 618

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            +    +  L EM   G +P++ T+  ++N L  + ++  A  ++  M+ +GVVP+
Sbjct: 619 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 674



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 170/336 (50%), Gaps = 11/336 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N L+  LCK+   ++A         +G      ++NT+I+G+CK   + E   L
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                  G  PD  TY +LINGLC E  ++ A  L +E   +G+ P+ V++ +L+ G C 
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G I        A ++++EM   G +PD  TY I+++G CK G++  A  +  + I +G 
Sbjct: 373 QGLI------LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY 426

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   F  LI G+C+  K+  A +++  M + G+ PD  TY  V++  CK G       
Sbjct: 427 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 486

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             +EM   G  P   TYN L+   C+  +++ A+ ++  M   G+ PD +++N L+ G C
Sbjct: 487 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 546

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLVSKSS 458
           ++G+ E     F KL+ EKG  +    + +L+   S
Sbjct: 547 RNGDLEGAYLLFQKLE-EKGYSATADTFNTLIGAFS 581



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 161/377 (42%), Gaps = 64/377 (16%)

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           + G+++DA   F+          A ++N +++    A   D+  ++   M  +G+ PD++
Sbjct: 62  RAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLH 121

Query: 201 T-------------------------------YSALINGLCKENRLDDAELLLHEMCERG 229
           T                               Y  ++ GL       DA  L  +M    
Sbjct: 122 THTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTH 181

Query: 230 LTPNDVIFTTLIDGHCKNG-----------------RIDM------------AGDMKEAR 260
           + PN   F  ++   CK G                  I++            AG + EA 
Sbjct: 182 VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAV 241

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++VD M    + PD +TY  L+ G CK+   + A+   + M+ +G   D+  +  +I G+
Sbjct: 242 RLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGY 300

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+   V EA  +L++ +  G  PD  TY  +I+  C  GD +    L  E ++ G  P +
Sbjct: 301 CKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDI 360

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             YN+L+ GLC  G + +A  +++ M + G  PD  TYNI++ G CK GN  D   + ++
Sbjct: 361 VVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 420

Query: 441 ---KGLVSDYACYTSLV 454
              KG + D   + +L+
Sbjct: 421 AIMKGYLPDVFTFNTLI 437



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 112/260 (43%), Gaps = 22/260 (8%)

Query: 202 YSALINGLCKENRLDDAELLLHEM----CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           Y A I    +  RL DA      M    C       + I   L+D          A    
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVD----------AAYHD 102

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A K+   M   G++PD  T+TI L  FC       AL + + +  RG     VA+  ++
Sbjct: 103 QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA----VAYCTVV 158

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G    G   +A ++  +ML   + P+ A +  V+   CK GD      LL ++   G  
Sbjct: 159 CGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMS 218

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---F 434
             + TYN  + GLC+ G+L  A  L+D M     VPD +TYN L+ G CK   P++   +
Sbjct: 219 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHY 277

Query: 435 DKLQSEKGLVSDYACYTSLV 454
            +    +G + D   Y +++
Sbjct: 278 LRRMMNQGCLPDDFTYNTII 297



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 6/198 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R+N         +++   G  P    FN L++  C+ G ++ A ++F +  ++G
Sbjct: 506 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 565

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             ATA +FNTLI       N+    ++   M   G R D YTY  LI+G CK   +D A 
Sbjct: 566 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 625

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-GDMKEARKI--VDEMCTNGLNPDK- 275
           + L EM ++G  P+   F  +I+    N R+  A G +    KI  V E+    LN DK 
Sbjct: 626 MHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNADKK 685

Query: 276 --ITYTILLDGFCKEGDL 291
                 IL++   K+G +
Sbjct: 686 EIAAPKILVEDLMKKGHI 703


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 179/314 (57%), Gaps = 7/314 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++  FN ++H LCK G + +A ++  +  +RG+     ++N  I G C+A  L E  RL
Sbjct: 185 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 244

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    + PDV TY+ LI GLCK++   +A   L  M  +G  P+D  + T+IDG+CK
Sbjct: 245 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 303

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              I M   ++EA +++ +    G  PD++TY  L++G C EGD+E AL++  E   +GI
Sbjct: 304 ---ISM---VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 357

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D V + +L+ G C  G ++ A +++ EM + G  PD  TY +VI+  CK G+      
Sbjct: 358 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 417

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++ +    G+LP V T+N L++G CK  +L +A  L++ M + G+ PD ITYN +L G C
Sbjct: 418 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLC 477

Query: 427 KHGNPEDFDKLQSE 440
           K G   + ++   E
Sbjct: 478 KAGKVNEVNETFQE 491



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P    +  L++ LC EG ++ A  +F+E   +G+    V +N+L+ G C    +   
Sbjct: 321 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 380

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ + M   G  PD+ TY+ +INGLCK   + DA +++++   +G  P+   F TLIDG
Sbjct: 381 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 440

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D       A ++V+ M   G+ PD ITY  +L+G CK G +    +  +EMI 
Sbjct: 441 YCKRLKLD------SALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMIL 494

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI  FCR  K+ EA +++ +M + GL PD  ++  +I  FC+NGD + 
Sbjct: 495 KGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEG 554

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            + L +++   G+    +T+N L+        +  A  + D ML  G   D  TY +L++
Sbjct: 555 AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLID 614

Query: 424 GHCKHGN 430
           G CK  N
Sbjct: 615 GSCKTAN 621



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 163/296 (55%), Gaps = 6/296 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P +  +N++++ LCK G I DA +V ++   +G      +FNTLI+G+CK  
Sbjct: 386 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 445

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD   +L   M   G+ PD  TY++++NGLCK  ++++      EM  +G  PN + + 
Sbjct: 446 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 505

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+  C++ +      M+EA K++ +M   GL+PD +++  L+ GFC+ GDLE A  + 
Sbjct: 506 ILIENFCRSNK------MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 559

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +++ ++G       F  LI  F     +  AE++  EML  G + D  TY ++ID  CK 
Sbjct: 560 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 619

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            +    +  L EM   G +P++ T+  ++N L  + ++  A  ++  M+ +GVVP+
Sbjct: 620 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 675



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 170/336 (50%), Gaps = 11/336 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N L+  LCK+   ++A         +G      ++NT+I+G+CK   + E   L
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                  G  PD  TY +LINGLC E  ++ A  L +E   +G+ P+ V++ +L+ G C 
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G I        A ++++EM   G +PD  TY I+++G CK G++  A  +  + I +G 
Sbjct: 374 QGLI------LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY 427

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   F  LI G+C+  K+  A +++  M + G+ PD  TY  V++  CK G       
Sbjct: 428 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 487

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             +EM   G  P   TYN L+   C+  +++ A+ ++  M   G+ PD +++N L+ G C
Sbjct: 488 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 547

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLVSKSS 458
           ++G+ E     F KL+ EKG  +    + +L+   S
Sbjct: 548 RNGDLEGAYLLFQKLE-EKGYSATADTFNTLIGAFS 582



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 161/377 (42%), Gaps = 64/377 (16%)

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           + G+++DA   F+          A ++N +++    A   D+  ++   M  +G+ PD++
Sbjct: 63  RAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLH 122

Query: 201 T-------------------------------YSALINGLCKENRLDDAELLLHEMCERG 229
           T                               Y  ++ GL       DA  L  +M    
Sbjct: 123 THTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTH 182

Query: 230 LTPNDVIFTTLIDGHCKNG-----------------RIDM------------AGDMKEAR 260
           + PN   F  ++   CK G                  I++            AG + EA 
Sbjct: 183 VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAV 242

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++VD M    + PD +TY  L+ G CK+   + A+   + M+ +G   D+  +  +I G+
Sbjct: 243 RLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGY 301

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+   V EA  +L++ +  G  PD  TY  +I+  C  GD +    L  E ++ G  P +
Sbjct: 302 CKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDI 361

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             YN+L+ GLC  G + +A  +++ M + G  PD  TYNI++ G CK GN  D   + ++
Sbjct: 362 VVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 421

Query: 441 ---KGLVSDYACYTSLV 454
              KG + D   + +L+
Sbjct: 422 AIMKGYLPDVFTFNTLI 438



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 102/236 (43%), Gaps = 19/236 (8%)

Query: 202 YSALINGLCKENRLDDAELLLHEM----CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           Y A I    +  RL DA      M    C       + I   L+D          A    
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVD----------AAYHD 103

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A K+   M   G++PD  T+TI L  FC       AL + + +  RG     VA+  ++
Sbjct: 104 QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA----VAYCTVV 159

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G    G   +A ++  +ML   + P+ A +  V+   CK GD      LL ++   G  
Sbjct: 160 CGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMS 219

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
             + TYN  + GLC+ G+L  A  L+D M     VPD +TYN L+ G CK   P++
Sbjct: 220 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQE 274



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 6/198 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R+N         +++   G  P    FN L++  C+ G ++ A ++F +  ++G
Sbjct: 507 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 566

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             ATA +FNTLI       N+    ++   M   G R D YTY  LI+G CK   +D A 
Sbjct: 567 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 626

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-GDMKEARKI--VDEMCTNGLNPDK- 275
           + L EM ++G  P+   F  +I+    N R+  A G +    KI  V E+    LN DK 
Sbjct: 627 MHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNADKK 686

Query: 276 --ITYTILLDGFCKEGDL 291
                 IL++   K+G +
Sbjct: 687 EIAAPKILVEDLMKKGHI 704


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 187/369 (50%), Gaps = 32/369 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P+  + N LM  LC +G++K +    D+   +G     VS+  L+NG CK  
Sbjct: 70  KILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIG 129

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L   +E    RPDV  YS +I+GLCK+  +D+A  L  EM  RG+ P+ + +T
Sbjct: 130 ETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYT 189

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           TLI G C  G++  A                             G +KE++ ++  M   
Sbjct: 190 TLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKK 249

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ PD + Y+IL+DG+C  G+++ A  I   M++ G+  D  ++  +I+G C+G +V EA
Sbjct: 250 GVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEA 309

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +LREML   + PD  TY+ +ID  CK G   T   L KEM   G    + TYN+L++G
Sbjct: 310 MNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDG 369

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LCK+  L  A  L   M + G+ P+  TY  L++G CK G  +    L      KG   D
Sbjct: 370 LCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCID 429

Query: 447 YACYTSLVS 455
              YT ++S
Sbjct: 430 VWTYTVMIS 438



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 186/336 (55%), Gaps = 9/336 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I D    P V +++ ++  LCK+  + +A  ++ E   RG+    +++ TLI G C A  
Sbjct: 141 IEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQ 200

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L E F L + M    + P++YTY+ LI+ LCKE ++ +++ LL  M ++G+ P+ VI++ 
Sbjct: 201 LMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSI 260

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+DG+C      + G++++A++I   M   G+NPD  +Y I+++G CK   ++ A+++ +
Sbjct: 261 LMDGYC------LVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLR 314

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ + +  D V +++LI G C+ G++     + +EM   G   +  TY  ++D  CKN 
Sbjct: 315 EMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQ 374

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +      L  +M+  G  P   TY AL++GLCK G+LK    L   +L  G   D  TY 
Sbjct: 375 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYT 434

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           +++ G CK G    FD+  + K  + D  C  + V+
Sbjct: 435 VMISGLCKEGM---FDEALAMKSKMEDNGCIPNAVT 467



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 174/315 (55%), Gaps = 12/315 (3%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CL  ++M         G   E++    +P++Y +N L+  LCKEGK+K+++ +     K+
Sbjct: 196 CLAGQLMEA------FGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKK 249

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    V ++ L++G+C    + +  ++  VM  +G+ PDVY+Y+ +INGLCK  R+D+A
Sbjct: 250 GVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEA 309

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL EM  + + P+ V +++LIDG CK GRI    D+ +      EM   G   + +TY
Sbjct: 310 MNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTK------EMHHRGQPANLVTY 363

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             LLDG CK  +L+ A+ +  +M +RGI+ +   +TALI G C+GG++ + + + + +L 
Sbjct: 364 NSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLV 423

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G   D  TYT++I   CK G       +  +M  +G +P   T+  ++  L +  +   
Sbjct: 424 KGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDK 483

Query: 399 ANMLLDTMLDLGVVP 413
           A  LL  M+  G++P
Sbjct: 484 AEKLLHEMIAKGLLP 498



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 168/334 (50%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +   ++L++  C  G++  +  V  +  K G     +  NTL+ G C    + + 
Sbjct: 40  GIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKS 99

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 +   G + D  +Y  L+NGLCK      A  LL  + +R   P+ V+++T+IDG
Sbjct: 100 LHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDG 159

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+  +D      EA  +  EM   G+ PD ITYT L+ GFC  G L  A  +  EMI 
Sbjct: 160 LCKDKLVD------EAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMIL 213

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + I  +   +  LI   C+ GKV E++ +L  M K G+KPD   Y++++D +C  G+ + 
Sbjct: 214 KNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQK 273

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++   M   G  P V +YN ++NGLCK  ++  A  LL  ML   ++PD +TY+ L++
Sbjct: 274 AKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLID 333

Query: 424 GHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           G CK G      D  K    +G  ++   Y SL+
Sbjct: 334 GLCKLGRITTILDLTKEMHHRGQPANLVTYNSLL 367



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           + F  ++    K K+      L   ME  G+ PD+ T S LIN  C   ++  +  +L +
Sbjct: 11  IEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGK 70

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           + + G  PN +I  TL+ G C      + G++K++    D++   G   D+++Y ILL+G
Sbjct: 71  ILKLGYQPNTIILNTLMKGLC------LKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNG 124

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK G+   A+ + + +  R    D V ++ +I G C+   V EA  +  EM   G+ PD
Sbjct: 125 LCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPD 184

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TYT +I  FC  G     F LL EM      P + TYN L++ LCK G++K +  LL 
Sbjct: 185 VITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLA 244

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            M   GV PD + Y+IL++G+C  G  +   ++     + G+  D   Y  +++
Sbjct: 245 VMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIIN 298



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 9/261 (3%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P +  +  ++  L K         L  +M  +G+ P+ V  + LI+  C        G M
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCH------LGQM 61

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
             +  ++ ++   G  P+ I    L+ G C +G+++ +L    +++ +G ++D V++  L
Sbjct: 62  AFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGIL 121

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           ++G C+ G+   A ++LR +     +PD   Y+ +ID  CK+      + L  EM + G 
Sbjct: 122 LNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGI 181

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P V TY  L+ G C  GQL  A  LL+ M+   + P+  TYN L++  CK G  ++   
Sbjct: 182 FPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKN 241

Query: 437 L---QSEKGLVSDYACYTSLV 454
           L    ++KG+  D   Y+ L+
Sbjct: 242 LLAVMTKKGVKPDVVIYSILM 262


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 224/461 (48%), Gaps = 53/461 (11%)

Query: 36  KKGMGSSASLFASILETRGTH-LPGLVLDALMIVYV----DLGFLDDAIQCFRLLRKHYF 90
           K+G     ++    +ETRG+  LP  V   ++I  +    DL    + ++  RL +K   
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKK--- 305

Query: 91  RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
              +     LI  ++            LE+ + G  P+V  +N ++H L + G+++ AQ+
Sbjct: 306 -ASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
            F E    GL    +++N+L+NG+CKA +L E   L   +  +G+ P V TY+ LI+G C
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYC 424

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           +   L++A  L  EM E+G  P+   +T L+ G      + MA      R+  DEM + G
Sbjct: 425 RLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMA------REFFDEMLSKG 478

Query: 271 LNPD-----------------------------------KITYTILLDGFCKEGDLESAL 295
           L PD                                    +TY IL+DG CK G+L  A 
Sbjct: 479 LQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAK 538

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           D++ +M+  G++ D + +T LI   C  G + EA +  ++M+  GL P   TYT+ I  +
Sbjct: 539 DLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAY 598

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G+  + +   ++M  +G  P   TYN L++ LC+ G+ + A      ML+ G+VP+ 
Sbjct: 599 CRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNK 658

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
            TY +L++G+CK GN ED  +   E    G+  DY  + +L
Sbjct: 659 YTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKAL 699



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 166/352 (47%), Gaps = 45/352 (12%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           ++E+   G  P V  +N L++  CK G +K+A ++F +    GL  T +++N LI+G+C+
Sbjct: 366 FVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCR 425

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--- 233
             +L+E  RLK  M   G  PDV TY+ L+ G      L  A     EM  +GL P+   
Sbjct: 426 LGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFA 485

Query: 234 --------------------------------DVIFTTLIDGHCKNGRIDMAGDMKEARK 261
                                            V +  LIDG CK G ++ A D++    
Sbjct: 486 YNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQM--- 542

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
              +M  NGL PD ITYT L+   C+ G L  A    K+MI  G+    V +T  I  +C
Sbjct: 543 ---KMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYC 599

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           R G +  A    R+ML+ G++P++ TY ++I   C+ G T+  +R   EM   G +P   
Sbjct: 600 RRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKY 659

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL----EGHCKHG 429
           TY  L++G CK G  ++A      M   G+ PD +T+  L     EGH  H 
Sbjct: 660 TYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGFDEGHMNHA 711



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 173/379 (45%), Gaps = 45/379 (11%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA--VSFNTLIN 172
             + E+L  G  PS+  +N L+    KEG+     M+  E   RG       V+ N +I 
Sbjct: 223 AVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVIT 282

Query: 173 GHCKAKNLD------EGFRLKS----------------------------VMEGSGMRPD 198
           G  +  +L+      EG RL                               ME  G+ P 
Sbjct: 283 GLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPT 342

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           V TY+A+I+GL +  +++ A++   EM   GL P+ + + +L++G+CK      AG +KE
Sbjct: 343 VVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCK------AGSLKE 396

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A  +  ++   GL P  +TY IL+DG+C+ GDLE A  +++EM+++G   D   +T L+ 
Sbjct: 397 ALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMK 456

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G      +  A     EML  GL+PD   Y   I      G     FRL + M  +G   
Sbjct: 457 GSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISS 516

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFD 435
              TYN L++GLCK G L +A  L   M+  G+ PD ITY  L+  HC+ G       F 
Sbjct: 517 DTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFF 576

Query: 436 KLQSEKGLVSDYACYTSLV 454
           K     GL      YT  +
Sbjct: 577 KDMISDGLAPSAVTYTVFI 595



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 146/309 (47%), Gaps = 12/309 (3%)

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
            F E    G+       N ++     A   D+   + + M   G+ P + TY+ L++   
Sbjct: 189 AFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFL 248

Query: 211 KENRLDDAELLLHEMCERG--LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           KE R D   +LL EM  RG    PNDV    +I G  + G ++ A +M E  ++  +  +
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASS 308

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
                   TY  L+ G   +G ++ A D++ EM   GI    V + A+I G  + G+V  
Sbjct: 309 -------FTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEA 361

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+    EM  +GL+PD  TY  +++ +CK G  K    L  ++R  G  P V TYN L++
Sbjct: 362 AQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILID 421

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH---CKHGNPEDFDKLQSEKGLVS 445
           G C+ G L+ A  L + M++ G +PD  TY IL++G    C      +F      KGL  
Sbjct: 422 GYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQP 481

Query: 446 DYACYTSLV 454
           D   Y + +
Sbjct: 482 DCFAYNTRI 490



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 7/197 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +T          ++++  G  P    +  L+H  C+ G +++A+  F +    G
Sbjct: 524 LIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDG 583

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  +AV++   I+ +C+  NL   +     M   G+ P+  TY+ LI+ LC+  R   A 
Sbjct: 584 LAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAY 643

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
              HEM ERGL PN   +T LIDG+CK       G+ ++A +   EM  NG++PD +T+ 
Sbjct: 644 RHFHEMLERGLVPNKYTYTLLIDGNCKE------GNWEDAMRFYFEMHQNGIHPDYLTHK 697

Query: 280 ILLDGFCKEGDLESALD 296
            L  GF  EG +  A++
Sbjct: 698 ALFKGF-DEGHMNHAIE 713



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLI       L      F+ +++  G +PS   + V +H  C+ G +  A   F +  + 
Sbjct: 558 CLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEE 617

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    +++N LI+  C+       +R    M   G+ P+ YTY+ LI+G CKE   +DA
Sbjct: 618 GVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDA 677

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDG 243
                EM + G+ P+ +    L  G
Sbjct: 678 MRFYFEMHQNGIHPDYLTHKALFKG 702


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 228/458 (49%), Gaps = 36/458 (7%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVL 62
           R +L +++ ++H L   +    AR LL  +        +  LF  + E  R      +  
Sbjct: 97  RPSLVSHAQLLHILARARRFHDARALLSSLPPH-----AEPLFPHLAEVYRDFTFSAVSF 151

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D L+  + D G L  A+  F  + K   R   R C  L+++++++  P +    Y ++  
Sbjct: 152 DLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRI 211

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P  +   ++    C++G++  A    +E    GL    V+++ +++ +C     ++
Sbjct: 212 AGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTED 271

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLI 241
             R+   ++  G+ P+V TY+ L+ G CK+ R+++AE ++ EM E G +  ++V +  +I
Sbjct: 272 ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI 331

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           +G+C+ GR+D A                             G M+E +K++ EM   G+ 
Sbjct: 332 NGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMR 391

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK +Y  L+DG+C+EG +  A ++ + M++ G+    + +  L+ GFC    + +A R+
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
              MLK G+ P++ + + ++D   K G T+    L KE  + G    V T+N ++NGLCK
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            G++  A  LLD M +L   PD +TY  L +G+CK G 
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQ 549



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 178/337 (52%), Gaps = 30/337 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDE 182
           G SP+V  + +L+   CK+G++++A+ V  E  + G +    V++  +ING+C+   +D+
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             R+++ M  +G+  +++ Y+ +INGLCK  R+++ + +L EM + G+ P+   + TLID
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 243 GHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNGLNP 273
           G+C+ G +  A +M                              +A ++   M   G+ P
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAP 462

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           ++I+ + LLDG  K G  E AL++ KE + RG+  + + F  +I+G C+ G++ EAE +L
Sbjct: 463 NEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL 522

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M ++   PD  TY  + D +CK G   T   L+ +M   G  P+VE +N+ + G    
Sbjct: 523 DRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIA 582

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            Q    N +   M   G+ P+ +TY  L+ G CK GN
Sbjct: 583 KQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 191/407 (46%), Gaps = 32/407 (7%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           L  + L+  +  L  +DDA++ + L+ K         C  L+D + +       L  + E
Sbjct: 430 LTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKE 489

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
            L  G + +V  FN +++ LCK G++ +A+ + D   +      ++++ TL +G+CK   
Sbjct: 490 TLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQ 549

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L     L + ME  G  P V  +++ I G     +      +  EM  RGL+PN V +  
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G CK G      ++ EA  +  EM  NG+NP+    + L+  F KEG ++ A  + +
Sbjct: 610 LIAGWCKEG------NLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQ 663

Query: 300 EMIK---------RGIELD-----------------NVAFTALISGFCRGGKVVEAERML 333
           +++            IE+D                 NV +  +I G C+ G++ +A+ + 
Sbjct: 664 KLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLF 723

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             +      PD+ TY+ +I     +G     F L   M S G  P + TYN+L+ GLCK 
Sbjct: 724 ESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKS 783

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           G+L  A  L + +   G+ P+ ITYN L++ +CK G   +  KL+ +
Sbjct: 784 GKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQK 830



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 164/346 (47%), Gaps = 57/346 (16%)

Query: 124 GYSPSVYVFNVLM--HKLCKEG-KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           G++PSV +FN  +  H + K+  K+ D   +  E   RGL    V++  LI G CK  NL
Sbjct: 564 GFAPSVEMFNSFITGHFIAKQWHKVND---IHSEMSARGLSPNLVTYGALIAGWCKEGNL 620

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN------- 233
            E   L   M  +GM P+V+  SAL++   KE ++D+A L+L ++    + P        
Sbjct: 621 HEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIE 680

Query: 234 -------------------DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
                              +V++  +I G CK+GRI       +A+ + + +      PD
Sbjct: 681 IDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRI------ADAKSLFESLRNKRFLPD 734

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+ L+ G    G ++ A  +R  M+  G+  + + + +LI G C+ GK+  A  +  
Sbjct: 735 NFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFN 794

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           ++   G+ P+  TY  +ID +CK G T   F+L ++M  +G+                  
Sbjct: 795 KLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGY------------------ 836

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            ++ A  LLD M++  V P+ ITY  L+ G+ K GN E+  KL  E
Sbjct: 837 -MEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDE 881



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 112/186 (60%), Gaps = 10/186 (5%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           ++NV++  LCK G+I DA+ +F+    +       ++++LI+G   + ++DE F L+ VM
Sbjct: 702 MWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVM 761

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
             +G+ P++ TY++LI GLCK  +L  A  L +++  +G++PN + + TLID +CK G+ 
Sbjct: 762 LSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821

Query: 251 DMA----------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
             A          G M+EA K++D+M  N ++P+ ITY  L+ G+ K G++E    +  E
Sbjct: 822 TEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDE 881

Query: 301 MIKRGI 306
           M  RG+
Sbjct: 882 MHIRGL 887



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 126/272 (46%), Gaps = 48/272 (17%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF----------------------- 152
            Y E+++ G +P+V++ + LM    KEGK+ +A +V                        
Sbjct: 626 LYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKIS 685

Query: 153 ---DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
              D       H+  V +N +I G CK+  + +   L   +      PD +TYS+LI+G 
Sbjct: 686 HVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGC 745

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
                +D+A  L   M   GLTPN + + +LI G CK+G++        A  + +++ + 
Sbjct: 746 AASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLS------RAVNLFNKLQSK 799

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG----------------IELDNVAF 313
           G++P+ ITY  L+D +CKEG    A  ++++M++ G                ++ + + +
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITY 859

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
             LI G+ + G + E  ++  EM   GL P +
Sbjct: 860 CTLIHGYIKSGNMEEISKLYDEMHIRGLLPTN 891



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 83/165 (50%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +++ +LL      G L SAL++   M K G      +   L++   + G    A  +  +
Sbjct: 149 VSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQ 208

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   G+ PD+ T  ++   +C++G        ++EM   G    +  Y+A+M+  C  G 
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            ++A  +L+++   G+ P+ +TY +L++G+CK G  E+ +++  E
Sbjct: 269 TEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313


>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 208/435 (47%), Gaps = 25/435 (5%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDA 64
           TL  YS ++H L  +     A  +L  I+    +   + LF +IL + R       V D+
Sbjct: 190 TLETYSIILHILTKNHKFKSAESVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFDS 249

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L   Y  +  L +AI  F  ++ + F      C   I   +      + L FY E+  Y 
Sbjct: 250 LFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYR 309

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+VY  N++M   CK GK++ A  VF      G   T  S+NTLI G+C    L+ G 
Sbjct: 310 ISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGM 369

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +LK +ME +G+RPD  T++ LING C+  +L +A  +  EM    + PN + + TLI+G+
Sbjct: 370 KLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGY 429

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            + G  +M G      ++ DEM  NG+  D +TY  L+ G C EG  + A  + KE+ + 
Sbjct: 430 SQVGNSEMGG------RLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRE 483

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  ++  F+ALI+G C       A ++ + M++ G  P+  T+ M+I  FCKN D    
Sbjct: 484 NLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGA 543

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +++EM      P  +T + L  GL   G+                  +++   +  E 
Sbjct: 544 VEVVREMSERSIAPDSDTLSELCRGLWLSGK------------------EELALKLCKEM 585

Query: 425 HCKHGNPEDFDKLQS 439
             KH  PE FDK ++
Sbjct: 586 EMKHLMPEGFDKSKT 600



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 23/250 (9%)

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT---N 269
           ++L +A L  + +C+      D +F T                MK+ R  +D  C     
Sbjct: 227 SKLFEAILYSYRICDSSPCVFDSLFKTY-------------AQMKKLRNAIDVFCQMKDY 273

Query: 270 GLNP--DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           G  P  +     I      + GD+  AL   +EM +  I  +      ++  FC+ GK+ 
Sbjct: 274 GFLPRVESCNAYISASISLQRGDI--ALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLE 331

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A  + + M  +G  P   +Y  +I  +C  G   +G +L   M  +G  P   T+N L+
Sbjct: 332 KAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLI 391

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
           NG C+ G+L  AN +   M    VVP+ ITYN L+ G+ + GN E   +L  E    G+ 
Sbjct: 392 NGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIK 451

Query: 445 SDYACYTSLV 454
           +D   Y +L+
Sbjct: 452 ADILTYNALI 461


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 228/458 (49%), Gaps = 36/458 (7%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVL 62
           R +L +++ ++H L   +    AR LL  +        +  LF  + E  R      +  
Sbjct: 97  RPSLVSHAQLLHILARARRFHDARALLSSLPPH-----AEPLFPHLAEVYRDFTFSAVSF 151

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D L+  + D G L  A+  F  + K   R   R C  L+++++++  P +    Y ++  
Sbjct: 152 DLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRI 211

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P  +   ++    C++G++  A    +E    GL    V+++ +++ +C     ++
Sbjct: 212 AGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTED 271

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLI 241
             R+   ++  G+ P+V TY+ L+ G CK+ R+++AE ++ EM E G +  ++V +  +I
Sbjct: 272 ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI 331

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           +G+C+ GR+D A                             G M+E +K++ EM   G+ 
Sbjct: 332 NGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMR 391

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PDK +Y  L+DG+C+EG +  A ++ + M++ G+    + +  L+ GFC    + +A R+
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
              MLK G+ P++ + + ++D   K G T+    L KE  + G    V T+N ++NGLCK
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            G++  A  LLD M +L   PD +TY  L +G+CK G 
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQ 549



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 178/337 (52%), Gaps = 30/337 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDE 182
           G SP+V  + +L+   CK+G++++A+ V  E  + G +    V++  +ING+C+   +D+
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             R+++ M  +G+  +++ Y+ +INGLCK  R+++ + +L EM + G+ P+   + TLID
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 243 GHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNGLNP 273
           G+C+ G +  A +M                              +A ++   M   G+ P
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAP 462

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           ++I+ + LLDG  K G  E AL++ KE + RG+  + + F  +I+G C+ G++ EAE +L
Sbjct: 463 NEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL 522

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M ++   PD  TY  + D +CK G   T   L+ +M   G  P+VE +N+ + G    
Sbjct: 523 DRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIA 582

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            Q    N +   M   G+ P+ +TY  L+ G CK GN
Sbjct: 583 KQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 174/346 (50%), Gaps = 38/346 (10%)

Query: 124 GYSPSVYVFNVLM--HKLCKEG-KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           G++PSV +FN  +  H + K+  K+ D   +  E   RGL    V++  LI G CK  NL
Sbjct: 564 GFAPSVEMFNSFITGHFIAKQWHKVND---IHSEMSARGLSPNLVTYGALIAGWCKEGNL 620

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN------- 233
            E   L   M  +GM P+V+  SAL++   KE ++D+A L+L ++    + P        
Sbjct: 621 HEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIE 680

Query: 234 -------------------DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
                              +V++  +I G CK+GRI       +A+ + + +      PD
Sbjct: 681 IDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRI------ADAKSLFESLRNKRFLPD 734

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+ L+ G    G ++ A  +R  M+  G+  + + + +LI G C+ GK+  A  +  
Sbjct: 735 NFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFN 794

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           ++   G+ P+  TY  +ID +CK G T   F+L ++M  +G  P V TY+ L+ GLC  G
Sbjct: 795 KLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQG 854

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            ++ A  LLD M++  V P+ ITY  L+ G+ K GN E+  KL  E
Sbjct: 855 YMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDE 900



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 195/435 (44%), Gaps = 95/435 (21%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G  P  Y +N L+   C+EG ++ A  +     + GL AT +++NTL+ G C   
Sbjct: 384 EMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLH 443

Query: 179 NLDEGFRLKSVMEGSGMRPD-----------------------------------VYTYS 203
            +D+  RL  +M   G+ P+                                   V T++
Sbjct: 444 AIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFN 503

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM------- 256
            +INGLCK  R+ +AE LL  M E    P+ + + TL DG+CK G++  A  +       
Sbjct: 504 TVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHL 563

Query: 257 -------------------KEARKIVD---EMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              K+  K+ D   EM   GL+P+ +TY  L+ G+CKEG+L  A
Sbjct: 564 GFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEA 623

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD---------- 344
            ++  EM+  G+  +    +AL+S F + GKV EA  +L++++ + + P           
Sbjct: 624 CNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDK 683

Query: 345 ----------------DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                           +  + ++I   CK+G       L + +R+   LP   TY++L++
Sbjct: 684 ISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH 743

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLV 444
           G    G +  A  L D ML  G+ P+ ITYN L+ G CK G        F+KLQS KG+ 
Sbjct: 744 GCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQS-KGIS 802

Query: 445 SDYACYTSLVSKSSK 459
            +   Y +L+ +  K
Sbjct: 803 PNGITYNTLIDEYCK 817



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 6/154 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G +P++  +N L++ LCK GK+  A  +F++   +G+    +++NTLI+ +CK   
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGK 820

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E F+LK  M   G++P V TYS LI GLC +  +++A  LL +M E  + PN + + T
Sbjct: 821 TTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCT 880

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           LI G+ K      +G+M+E  K+ DEM   GL P
Sbjct: 881 LIHGYIK------SGNMEEISKLYDEMHIRGLLP 908



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 83/165 (50%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +++ +LL      G L SAL++   M K G      +   L++   + G    A  +  +
Sbjct: 149 VSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQ 208

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   G+ PD+ T  ++   +C++G        ++EM   G    +  Y+A+M+  C  G 
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            ++A  +L+++   G+ P+ +TY +L++G+CK G  E+ +++  E
Sbjct: 269 TEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP+   +N L+ + CKEGK  +A  +  +  + G+  T ++++ LI G C    ++E 
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEA 859

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            +L   M  + + P+  TY  LI+G  K   +++   L  EM  RGL P + I
Sbjct: 860 IKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWI 912



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 61/128 (47%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L  A+  F  L+             LID   +    T       ++++ G  P+V  +
Sbjct: 784 GKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITY 843

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           ++L++ LC +G +++A  + D+  +  +    +++ TLI+G+ K+ N++E  +L   M  
Sbjct: 844 SILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHI 903

Query: 193 SGMRPDVY 200
            G+ P  +
Sbjct: 904 RGLLPTNW 911


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 182/333 (54%), Gaps = 14/333 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP    F+ L+  LCK G+I +A  VFD+    G     +++N L+NG CKA  ++    
Sbjct: 357 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 416

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ PDV TYS L++  CK +R+D+A  LLH M  RG TPN V F ++IDG C
Sbjct: 417 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC 476

Query: 246 KNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           K+ R        EA ++ D+M   +GL PDKITY  L+DG  + G    A    + ++  
Sbjct: 477 KSDR------SGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQA----EALLDA 526

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
             + D  AF   I+G  + G V  A ++   ML++ L PD  T+ ++I   CK G+ +  
Sbjct: 527 MPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQA 586

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L +EM +    P V T+ AL++GLCK GQ++ A  +LD M +LGV P+ +TYN L+ G
Sbjct: 587 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 646

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            CK G  E+  +   E    G V D   Y SLV
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 679



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 199/352 (56%), Gaps = 16/352 (4%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P+V  +N L+H LCK G+I++A    +E    G    ++++ +L+   C+A   D
Sbjct: 630 NLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 689

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  +L S ++  G  PD  TY+ L++GL K  + + A  +L EM  +G  P+ V + TLI
Sbjct: 690 DALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLI 749

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLN---PDKITYTILLDGFCKEGDLESALDIR 298
           D  CK      AGD++EAR++  +M +       P+ +TY++L++G CK G ++ A ++ 
Sbjct: 750 DSLCK------AGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELI 803

Query: 299 KEMIKRGIEL--DNVAFTALISGFCRGGKVVEAERMLREMLKVGLK--PDDATYTMVIDC 354
           +EM+++  ++  + + + + + G C+   + EA  ++R +    L+  PD  T++ +ID 
Sbjct: 804 QEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDG 863

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK G T     +  +M + G++P V TYN LMNGLCK  +++ A+ ++++M+D GV PD
Sbjct: 864 LCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPD 923

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQK 463
            ITY++L++  CK  + ++  +L    + +G   +   + S++    K  Q 
Sbjct: 924 VITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQS 975



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 177/317 (55%), Gaps = 7/317 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+   G +P++  +N +++ LCK  ++     +F+E  +RG H   V++NTLI+  C
Sbjct: 203 FRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLC 262

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPN 233
           KA +L+E  RL   M      P+V TYS LINGLCK  R+D+A  L+ EM  +   + PN
Sbjct: 263 KAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPN 322

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + + + +DG CK      A ++   R + D   +  ++PD +T++ L+DG CK G ++ 
Sbjct: 323 IITYNSFLDGLCKQSMTAEACELM--RSLRDG--SLRVSPDTVTFSTLIDGLCKCGQIDE 378

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  +MI  G   + + + AL++G C+  K+  A  M+  M+  G+ PD  TY++++D
Sbjct: 379 ACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVD 438

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM-LDLGVV 412
            FCK         LL  M S G  P V T+N++++GLCK  +   A  + D M L  G+V
Sbjct: 439 AFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLV 498

Query: 413 PDDITYNILLEGHCKHG 429
           PD ITY  L++G  + G
Sbjct: 499 PDKITYCTLIDGLFRTG 515



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 229/481 (47%), Gaps = 46/481 (9%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YS +++ L       +AR+L+  +  K     S  +  +I+ T  + L GL   ++    
Sbjct: 289 YSVLINGLCKVGRIDEARELIQEMTRK-----SCDVLPNII-TYNSFLDGLCKQSMTA-- 340

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGC--RCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
                  +A +  R LR    R+         LID + +          + +++  GY P
Sbjct: 341 -------EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP 393

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N L++ LCK  K++ A  + +    +G+    ++++ L++  CKA  +DE   L 
Sbjct: 394 NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 453

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIFTTLIDGHCK 246
             M   G  P+V T++++I+GLCK +R  +A  +  +M  + GL P+ + + TLIDG  +
Sbjct: 454 HGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFR 513

Query: 247 NGRIDMA-------------------------GDMKEARKIVDEMCTNGLNPDKITYTIL 281
            GR   A                         GD+  A ++ + M    L PDK+T+ IL
Sbjct: 514 TGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNIL 573

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G CK G+ E A  + +EM+ + ++ D + F ALI G C+ G+V  A  +L  M  +G+
Sbjct: 574 IAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV 633

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P+  TY  ++   CK+G  +   + L+EM S G +P   TY +L+  LC+  +  +A  
Sbjct: 634 PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 693

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSS 458
           L+  +   G  PD +TYNIL++G  K G  E    +  E   KG   D   Y +L+    
Sbjct: 694 LVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLC 753

Query: 459 K 459
           K
Sbjct: 754 K 754



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 179/338 (52%), Gaps = 14/338 (4%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            L+  + R +     L    E+  +G+ P    +N+L+  L K G+ + A  V +E   +G
Sbjct: 678  LVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKG 737

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR---PDVYTYSALINGLCKENRLD 216
             H   V++NTLI+  CKA +L+E  RL   M     R   P+V TYS LINGLCK  R+D
Sbjct: 738  HHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRID 797

Query: 217  DAELLLHEMCERG--LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL--N 272
            +A  L+ EM  +   + PN + + + +DG CK         M EA +++  +    L  +
Sbjct: 798  EARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSM------MAEACELMRSLRDGSLRVS 851

Query: 273  PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            PD +T++ L+DG CK G  + A ++  +MI  G   + V +  L++G C+  K+  A  M
Sbjct: 852  PDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAM 911

Query: 333  LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            +  M+  G+ PD  TY++++D FCK         LL  M S G  P V T+N++++GLCK
Sbjct: 912  IESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 971

Query: 393  HGQLKNANMLLDTM-LDLGVVPDDITYNILLEGHCKHG 429
              Q   A  + D M L  G+ PD ITY  L++G  + G
Sbjct: 972  SDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTG 1009



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 188/391 (48%), Gaps = 44/391 (11%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C  D+M R +           ++D G +P V  ++VL+   CK  ++ +A  +      R
Sbjct: 406 CKADKMERAH------AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 459

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVME-GSGMRPDVYTYSALINGLCKENRLDD 217
           G     V+FN++I+G CK+    E F++   M    G+ PD  TY  LI+GL +  R   
Sbjct: 460 GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQ 519

Query: 218 AELLLHEM----------CERGLT---------------------PNDVIFTTLIDGHCK 246
           AE LL  M          C  GL+                     P+ V F  LI G CK
Sbjct: 520 AEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACK 579

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 AG+ ++A  + +EM    L PD +T+  L+DG CK G +E+A DI   M   G+
Sbjct: 580 ------AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV 633

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V + AL+ G C+ G++ EA + L EM+  G  PD  TY  ++   C+   T    +
Sbjct: 634 PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 693

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L+ E++S G  P   TYN L++GL K GQ + A  +L+ M+  G  PD +TYN L++  C
Sbjct: 694 LVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLC 753

Query: 427 KHGNPEDFDKLQSEKGLVSDYACYTSLVSKS 457
           K G+ E+  +L  +        C  ++V+ S
Sbjct: 754 KAGDLEEARRLHGDMSSRVSRCCVPNVVTYS 784



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 194/368 (52%), Gaps = 18/368 (4%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C I+ + +    +  L  Y  +L+    P    FN+L+   CK G  + A  +F+E   +
Sbjct: 537 CCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 596

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            L    ++F  LI+G CKA  ++    +  +M   G+ P+V TY+AL++GLCK  R+++A
Sbjct: 597 NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEA 656

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
              L EM   G  P+ + + +L+   C+  R D      +A ++V E+ + G +PD +TY
Sbjct: 657 CQFLEEMVSSGCVPDSITYGSLVYALCRASRTD------DALQLVSELKSFGWDPDTVTY 710

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM-- 336
            IL+DG  K G  E A+ + +EM+ +G   D V +  LI   C+ G + EA R+  +M  
Sbjct: 711 NILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS 770

Query: 337 -LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM--RSDGHLPAVETYNALMNGLCKH 393
            +     P+  TY+++I+  CK G       L++EM  +S   LP + TYN+ ++GLCK 
Sbjct: 771 RVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQ 830

Query: 394 GQLKNANMLLDTMLD--LGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDY 447
             +  A  L+ ++ D  L V PD +T++ L++G CK G  ++    FD + +  G V + 
Sbjct: 831 SMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIA-GGYVPNV 889

Query: 448 ACYTSLVS 455
             Y  L++
Sbjct: 890 VTYNVLMN 897



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 198/400 (49%), Gaps = 41/400 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + ++N     +  + E+++ G+ P V  +N L+  LCK G +++A+ +  +   R 
Sbjct: 222 IINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRS 281

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVM--EGSGMRPDVYTYSALINGLCKENRLDD 217
                V+++ LING CK   +DE   L   M  +   + P++ TY++ ++GLCK++   +
Sbjct: 282 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE 341

Query: 218 AELLLHEMCERGL--TPNDVIFTTLIDGHCKNGRID------------------------ 251
           A  L+  + +  L  +P+ V F+TLIDG CK G+ID                        
Sbjct: 342 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNAL 401

Query: 252 -----MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 A  M+ A  +++ M   G+ PD ITY++L+D FCK   ++ AL++   M  RG 
Sbjct: 402 VNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGC 461

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
             + V F ++I G C+  +  EA +M  +M LK GL PD  TY  +ID   + G      
Sbjct: 462 TPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAE 521

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL  M      P    +N  +NGL K G +  A  + + ML+L +VPD +T+NIL+ G 
Sbjct: 522 ALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGA 577

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           CK GN E    L  E   K L  D   + +L+    K  Q
Sbjct: 578 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 617



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/273 (36%), Positives = 148/273 (54%), Gaps = 14/273 (5%)

Query: 126  SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            SP    F+ L+  LCK G+  +A  VFD+    G     V++N L+NG CK   ++    
Sbjct: 851  SPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHA 910

Query: 186  LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            +   M   G+ PDV TYS L++  CK + +D+A  LLH M  RG TPN V F ++IDG C
Sbjct: 911  MIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLC 970

Query: 246  KNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K+   D +G   EA ++ D+M   +GL PDKITY  L+DG  + G    A    + ++  
Sbjct: 971  KS---DQSG---EAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQA----EVLLDA 1020

Query: 305  GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
              + D  AF   I+G  + G V    R L  ML++ L PD  T+ ++I   CK G+ +  
Sbjct: 1021 MPDPDTYAFNCCINGLSKLGDV---SRALHRMLELELVPDKVTFNILIAGACKAGNFEQA 1077

Query: 365  FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
              L +EM +    P V T+ AL++GLCK GQ++
Sbjct: 1078 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 29/162 (17%)

Query: 124  GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG-KRGLHATAVSFNTLINGHCKAKNLDE 182
            G +P+V  FN ++  LCK  +  +A  +FD+   K GL    +++ TLI+G  +     +
Sbjct: 954  GCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQ 1013

Query: 183  GFRLKSVMEGSG----------------------------MRPDVYTYSALINGLCKENR 214
               L   M                                + PD  T++ LI G CK   
Sbjct: 1014 AEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGN 1073

Query: 215  LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
             + A  L  EM  + L P+ + F  LIDG CK G+++   D+
Sbjct: 1074 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDI 1115



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 77   DAIQCFRLLRKHYFRIPARGCRC-LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
            +A Q F  +   +   P +   C LID + RT       G    +LD    P  Y FN  
Sbjct: 977  EAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWA----GQAEVLLDAMPDPDTYAFNCC 1032

Query: 136  MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
            ++ L K G +  A     E     L    V+FN LI G CKA N ++   L   M    +
Sbjct: 1033 INGLSKLGDVSRALHRMLEL---ELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 1089

Query: 196  RPDVYTYSALINGLCKENRLD 216
            +PDV T+ ALI+GLCK  +++
Sbjct: 1090 QPDVMTFGALIDGLCKAGQVE 1110


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 32/426 (7%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFR 91
           IV++ G+   A      +  RG   P  V   +M+V Y  LG + ++ +    + +  F 
Sbjct: 176 IVTEMGLVEYAENLFDEMCARGVQ-PNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFV 234

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           +       ++         T  L ++    + G  P++  F  ++  LCK G +K A  +
Sbjct: 235 VDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEM 294

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLC 210
            +E   RG      +   LI+G CK    ++ FRL   ++     +P+V TY+A+I+G C
Sbjct: 295 LEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYC 354

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------------- 253
           ++ +++ AE+LL  M E+GL PN   +TTLIDGHCK G  + A                 
Sbjct: 355 RDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVC 414

Query: 254 ------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
                       G ++EA K++     NGL+ DK+TYTIL+   CK+ +++ AL +  +M
Sbjct: 415 TYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKM 474

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +K GI+ D  ++T LI+ FCR  ++ E+E    E ++ GL P + TYT +I  +C+ G+ 
Sbjct: 475 VKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNL 534

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   +    M   G      TY AL++GLCK  +L  A  L D M++ G+ P ++T   L
Sbjct: 535 RLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTL 594

Query: 422 LEGHCK 427
              +CK
Sbjct: 595 AYEYCK 600



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 229/481 (47%), Gaps = 34/481 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIV-SKKGMGSSASLFASILE--TRGTHLPG 59
           FR     Y      L+++K   +A +++  +V S   +G        ++E   +G     
Sbjct: 108 FRHFTRLYIACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPST 167

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR--CLIDRMMRTNLPTVTLGFY 117
             L+ ++ +  ++G ++ A   F         + ARG +  C+  R+M        LG  
Sbjct: 168 KTLNWVVKIVTEMGLVEYAENLFD-------EMCARGVQPNCVSYRVMVVGY--CKLGNV 218

Query: 118 LE-------ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           LE       +++ G+       ++++ + C++G +  A   F  F + GL    ++F  +
Sbjct: 219 LESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCM 278

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERG 229
           I G CK  ++ + F +   M G G +P+VYT++ALI+GLCK+   + A  L L  +    
Sbjct: 279 IEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSEN 338

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             PN + +T +I G+C++ +      M  A  ++  M   GL P+  TYT L+DG CK G
Sbjct: 339 HKPNVLTYTAMISGYCRDEK------MNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAG 392

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           + E A ++   M + G   +   + A++ G C+ G+V EA ++L+   + GL  D  TYT
Sbjct: 393 NFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYT 452

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I   CK  + K    L  +M   G  P + +Y  L+   C+  ++K + M  +  +  
Sbjct: 453 ILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRF 512

Query: 410 GVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS---KSSKYRQK 463
           G+VP + TY  ++ G+C+ GN      F    S+ G  SD   Y +L+S   K SK  + 
Sbjct: 513 GLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEA 572

Query: 464 R 464
           R
Sbjct: 573 R 573



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 33/339 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID + +          +L+++    + P+V  +  ++   C++ K+  A+M+     ++
Sbjct: 313 LIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQ 372

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++ TLI+GHCKA N +  + L +VM   G  P+V TY+A+++GLCK+ R+ +A
Sbjct: 373 GLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEA 432

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------- 253
             +L      GL  + V +T LI  HCK   I  A                         
Sbjct: 433 YKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAV 492

Query: 254 ----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 MKE+    +E    GL P   TYT ++ G+C+EG+L  AL     M   G   D
Sbjct: 493 FCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASD 552

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           ++ + ALISG C+  K+ EA  +   M++ GL P + T   +   +CK  D  +   +L+
Sbjct: 553 SITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLE 612

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            +        V T N L+  LC   ++  A +    +LD
Sbjct: 613 RLEKK---LWVRTVNTLVRKLCSERKVGMAALFFHKLLD 648



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + L F+  + D+G +     +  L+  LCK+ K+ +A+ ++D   ++GL    V+  TL 
Sbjct: 536 LALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLA 595

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             +CK   +D+G     V+E    +  V T + L+  LC E ++  A L  H++ ++   
Sbjct: 596 YEYCK---IDDGCSAMVVLERLEKKLWVRTVNTLVRKLCSERKVGMAALFFHKLLDKDPN 652

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDM 256
            N V     +    ++ + D+  D+
Sbjct: 653 VNRVTIAAFMTACYESNKYDLVSDL 677


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 198/369 (53%), Gaps = 13/369 (3%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++ + L+  +V  G LDDA      +   Y  +P     C  + ++        +G  LE
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDV---CTYNSLIYGYWKEGLVGLALE 410

Query: 120 IL----DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +L    + G  P+VY + +L+   CK GKI +A  V +E    GL    V FN LI+  C
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E   +   M   G +PDVYT+++LI+GLC+ + +  A  LL +M   G+  N V
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TLI+   + G I      KEARK+V+EM   G   D+ITY  L+ G C+ G+++ A 
Sbjct: 531 TYNTLINAFLRRGEI------KEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + ++M++ G    N++   LI+G CR G V EA    +EM+  G  PD  T+  +I+  
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G  + G  + ++++++G  P   T+N LM+ LCK G + +A +LLD  ++ G VP+ 
Sbjct: 645 CRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNH 704

Query: 416 ITYNILLEG 424
            T++ILL+ 
Sbjct: 705 RTWSILLQS 713



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 178/334 (53%), Gaps = 12/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVF-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           P + +FN L+H     G++ DA+ V  D     G+     ++N+LI G+ K   +     
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALE 410

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G +P+VY+Y+ L++G CK  ++D+A  +L+EM   GL PN V F  LI   C
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  RI       EA +I  EM   G  PD  T+  L+ G C+  +++ AL + ++MI  G
Sbjct: 471 KEHRI------PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V +  LI+ F R G++ EA +++ EM+  G   D+ TY  +I   C+ G+     
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L ++M  DGH P+  + N L+NGLC+ G ++ A      M+  G  PD +T+N L+ G 
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           C+ G  ED    F KLQ+E G+  D   + +L+S
Sbjct: 645 CRAGRIEDGLTMFRKLQAE-GIPPDTVTFNTLMS 677



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 184/336 (54%), Gaps = 14/336 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G++P    +  LM+ LCK G++  A+ +F    K  +    V FNTLI+G      LD+ 
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLDDA 372

Query: 184 FRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             + S M  S G+ PDV TY++LI G  KE  +  A  +LH+M  +G  PN   +T L+D
Sbjct: 373 KAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVD 432

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK G+ID      EA  +++EM  +GL P+ + +  L+  FCKE  +  A++I +EM 
Sbjct: 433 GFCKLGKID------EAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 486

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++G + D   F +LISG C   ++  A  +LR+M+  G+  +  TY  +I+ F + G+ K
Sbjct: 487 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK 546

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +L+ EM   G      TYN+L+ GLC+ G++  A  L + ML  G  P +I+ NIL+
Sbjct: 547 EARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILI 606

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            G C+ G  E+  + Q E   +G   D   + SL++
Sbjct: 607 NGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 642



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 229/482 (47%), Gaps = 47/482 (9%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           +R +   Y  ++  L A+    +  D L + +  +G+    SLF SI+            
Sbjct: 107 YRHSFDVYQVLIGKLGANG-EFKTIDRLLIQMKDEGIVFKESLFISIMRD---------- 155

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEIL 121
                 Y   GF     +    +R  Y   P  +    +++ ++  N   V    + ++L
Sbjct: 156 ------YDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDML 209

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
                P+++ F V+M   C   +I  A  +  +  K G    +V + TLI+   K   ++
Sbjct: 210 SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN 269

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E  +L   M   G  PD  T++ +I GLCK +R+++A  +++ M  RG  P+D+ +  L+
Sbjct: 270 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLM 329

Query: 242 DGHCKNGRIDMA-------------------------GDMKEARKIVDEMCTN-GLNPDK 275
           +G CK GR+D A                         G + +A+ ++ +M T+ G+ PD 
Sbjct: 330 NGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDV 389

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+ G+ KEG +  AL++  +M  +G + +  ++T L+ GFC+ GK+ EA  +L E
Sbjct: 390 CTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNE 449

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   GLKP+   +  +I  FCK         + +EM   G  P V T+N+L++GLC+  +
Sbjct: 450 MSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE 509

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
           +K+A  LL  M+  GVV + +TYN L+    + G  ++  KL +E   +G   D   Y S
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569

Query: 453 LV 454
           L+
Sbjct: 570 LI 571



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 187/371 (50%), Gaps = 38/371 (10%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L    ++  +G  P+  ++  L+H L K  ++ +A  + +E    G    A +FN +I 
Sbjct: 236 ALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL 295

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   ++E  ++ + M   G  PD  TY  L+NGLCK  R+D A+ L + + +    P
Sbjct: 296 GLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----P 351

Query: 233 NDVIFTTLIDGHCKNGRIDMA----GDMKEARKIVDEMCT-------------------- 268
             VIF TLI G   +GR+D A     DM  +  IV ++CT                    
Sbjct: 352 EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEV 411

Query: 269 ------NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
                  G  P+  +YTIL+DGFCK G ++ A ++  EM   G++ + V F  LIS FC+
Sbjct: 412 LHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCK 471

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
             ++ EA  + REM + G KPD  T+  +I   C+  + K    LL++M S+G +    T
Sbjct: 472 EHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQ 438
           YN L+N   + G++K A  L++ M+  G   D+ITYN L++G C+ G  +     F+K+ 
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591

Query: 439 SEKGLVSDYAC 449
            +    S+ +C
Sbjct: 592 RDGHAPSNISC 602



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 167/310 (53%), Gaps = 6/310 (1%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +  YG  P V  +N L++   KEG +  A  V  +   +G      S+  L++G CK   
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +DE + + + M   G++P+   ++ LI+  CKE+R+ +A  +  EM  +G  P+   F +
Sbjct: 440 IDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 499

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C+        ++K A  ++ +M + G+  + +TY  L++ F + G+++ A  +  
Sbjct: 500 LISGLCE------VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 553

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ +G  LD + + +LI G CR G+V +A  +  +ML+ G  P + +  ++I+  C++G
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +      KEM   G  P + T+N+L+NGLC+ G++++   +   +   G+ PD +T+N
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFN 673

Query: 420 ILLEGHCKHG 429
            L+   CK G
Sbjct: 674 TLMSWLCKGG 683



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 6/161 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N L+  LC+ G++  A+ +F++  + G   + +S N LING C++  ++E    +  M 
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMV 626

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  PD+ T+++LINGLC+  R++D   +  ++   G+ P+ V F TL+   CK G + 
Sbjct: 627 LRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFV- 685

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
                 +A  ++DE   +G  P+  T++ILL     +  L+
Sbjct: 686 -----YDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLD 721


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 179/328 (54%), Gaps = 13/328 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G + +   ++ L+  LCK  ++ +A  + +   +RG   T V++N++I G C+A+
Sbjct: 99  EMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRAR 158

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE       M   G  PD+ TY+ALI G CK   +     LL E+  RG TP+ V ++
Sbjct: 159 RVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYS 218

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+IDG CK GR      +++A  I +EM      P  ITY  L+ G+C+ GD++ A+ + 
Sbjct: 219 TVIDGLCKAGR------LRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLL 269

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M+      D V +T L+S FC+ G++ +A  + ++M+   L PD  T+T ++D  C  
Sbjct: 270 GKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGE 329

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LL+E+   G  P + TYN +++G CK  Q++ A  L+      G VP+ +TY
Sbjct: 330 GRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTY 389

Query: 419 NILLEGHCKHGNPED----FDKLQSEKG 442
           NIL+ G C+ G  +      D+L SE G
Sbjct: 390 NILVAGCCRAGRTDQALQYLDQLNSEGG 417



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G++P +  ++ ++  LCK G+++DA  +F+E        TA+++N+LI G+C+A 
Sbjct: 204 EVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAG 260

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++DE  RL   M      PDV TY+ L++  CK  RLDDA  L  +M    L+P+ V FT
Sbjct: 261 DMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFT 320

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +L+DG C  GR      M++A ++++E+   G  P   TY  ++DG+CK   +  A ++ 
Sbjct: 321 SLVDGLCGEGR------MEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELV 374

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG--LKPDDATYTMVIDCFC 356
            +   RG   + V +  L++G CR G+  +A + L ++   G       A Y +++D  C
Sbjct: 375 ADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALC 434

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           ++G T    +  +EM   G++PA  T+  ++  LCK  Q + A+ LL+ M+  G  P   
Sbjct: 435 RDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPG 494

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
           T + ++  +C+ G  +  D+L SE  L +D
Sbjct: 495 TCDAVVSAYCRAGMIQKADELASELRLYTD 524



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 183/340 (53%), Gaps = 12/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++   + P      V++  LC   ++ DA+ + +E   RG+ A A++++ L++G CK +
Sbjct: 64  EMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 123

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LDE   L   M   G  P V TY+++I G C+  R+D+A   + +M   G  P+ + +T
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYT 183

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G CK+       D+    +++ E+   G  PD +TY+ ++DG CK G L  A+DI 
Sbjct: 184 ALIGGFCKS------RDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 237

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM         + + +LI G+CR G + EA R+L +M+     PD  TYT ++  FCK 
Sbjct: 238 EEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKM 294

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G     + L ++M ++   P V T+ +L++GLC  G++++A  LL+ +   G  P   TY
Sbjct: 295 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           N +++G+CK       ++L ++   +G V +   Y  LV+
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVA 394



 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 178/346 (51%), Gaps = 14/346 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+V  +N ++   C+  ++ +A    ++    G H   +++  LI G CK++++  G
Sbjct: 139 GCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRG 198

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   +   G  PD+ TYS +I+GLCK  RL DA  +  EM      P  + + +LI G
Sbjct: 199 LELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGG 255

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C+      AGDM EA +++ +M  +   PD +TYT L+  FCK G L+ A ++ ++M+ 
Sbjct: 256 YCR------AGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVA 309

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             +  D V FT+L+ G C  G++ +A  +L E+ + G  P   TY  V+D +CK    + 
Sbjct: 310 NKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRK 369

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM-LDLGVVPDDIT-YNIL 421
              L+ + RS G +P   TYN L+ G C+ G+   A   LD +  + G  P  +  Y I+
Sbjct: 370 AEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAII 429

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           L+  C+ G  +D  +   E   +G V   A + ++V    K  Q +
Sbjct: 430 LDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQ 475



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 172/355 (48%), Gaps = 13/355 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            LG Y ++ D  + P    +  L+H L K  +++DA  V  E           +   ++ 
Sbjct: 24  ALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQ 82

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C    +D+   L   M   GM  +  TYSAL++GLCK  RLD+A  L+  M ERG  P
Sbjct: 83  SLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAP 142

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
             V + ++I G C+  R+D      EA   +++M   G +PD ITYT L+ GFCK  D+ 
Sbjct: 143 TVVTYNSIITGFCRARRVD------EAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVG 196

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             L++  E+ +RG   D V ++ +I G C+ G++ +A  +  EM      P   TY  +I
Sbjct: 197 RGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLI 253

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +C+ GD     RLL +M  D   P V TY  LM+  CK G+L +A  L   M+   + 
Sbjct: 254 GGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLS 313

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           PD +T+  L++G C  G  ED  +L  E   +G       Y  +V    K  Q R
Sbjct: 314 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVR 368



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 169/333 (50%), Gaps = 15/333 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P   + NV++  LC+ G+++ A  V+ +          +++  L++G  KA+ L +  +
Sbjct: 2   NPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQ 60

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M  +   PD  T + ++  LC  +R+DDA  L+ EM  RG+  N + ++ L+DG C
Sbjct: 61  VLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLC 120

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  R+D      EA  +V+ M   G  P  +TY  ++ GFC+   ++ A    ++M+  G
Sbjct: 121 KCERLD------EAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEG 174

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D + +TALI GFC+   V     +L E+ + G  PD  TY+ VID  CK G  +   
Sbjct: 175 CHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV 234

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            + +EM      P   TYN+L+ G C+ G +  A  LL  M+D    PD +TY  L+   
Sbjct: 235 DIFEEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAF 291

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           CK G  +D    F ++ + K L  D   +TSLV
Sbjct: 292 CKMGRLDDAYELFQQMVANK-LSPDVVTFTSLV 323



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 156/295 (52%), Gaps = 13/295 (4%)

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           N +I G C+A  L     +   M      PD  TY+ L++GL K  RL DA  +L EM  
Sbjct: 9   NVVIGGLCRAGRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVS 67

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
               P++   T ++   C   R+D      +AR++V+EM   G+  + ITY+ L+DG CK
Sbjct: 68  ARHVPDNTTLTVVVQSLCLGDRVD------DARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
              L+ A+ + + M +RG     V + ++I+GFCR  +V EA   + +M+  G  PD  T
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           YT +I  FCK+ D   G  LL E+   G  P + TY+ +++GLCK G+L++A   +D   
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDA---VDIFE 238

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           ++   P  ITYN L+ G+C+ G+ ++  +L     +     D   YT+L+S   K
Sbjct: 239 EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCK 293



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +NP  + + +++ G C+ G L  AL + ++M       D + +T L+ G  +  ++ +A 
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAV 59

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++L+EM+     PD+ T T+V+   C          L++EM   G      TY+AL++GL
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDY 447
           CK  +L  A  L++TM + G  P  +TYN ++ G C+    ++   F +    +G   D 
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 448 ACYTSLVSKSSKYR 461
             YT+L+    K R
Sbjct: 180 ITYTALIGGFCKSR 193


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 241/488 (49%), Gaps = 36/488 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV---LD 63
           L A+  ++  L   +     +++L      K +  S S F S+++ R  H P  V    D
Sbjct: 91  LRAHVILISRLFKARKFVVMKNVLTCYAMDKNLRCSVSDFVSLIDNR-FHEPKFVEKLCD 149

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            L  VYVD    ++  + F  +  +  +I  R C   +  + R++   ++LGF+ +++++
Sbjct: 150 MLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEF 209

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
               +VY   +++  LCK+G+++ A+ +  E   +G+    V++NTL+N + K  + +  
Sbjct: 210 KVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGV 269

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +  +ME   +  +  TY+ LI       ++ +AE +  +M ERG+  +  +FT++I  
Sbjct: 270 NEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISW 329

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            CK G +  A                             G +  A  +V+EM + GL+ +
Sbjct: 330 QCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMN 389

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + +  L++G+CK+G ++ AL ++  M K+G E D   +  +  G C+  +  EA+R L 
Sbjct: 390 LVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLF 449

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M++ G+ P+  ++T++ID  CK G+     R+ ++M+  G  P V TYN L++G  K G
Sbjct: 450 TMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKG 509

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           +LK A  L D M  +G+  D  TY  L+ G C  G  E+   L +E   KGL      YT
Sbjct: 510 KLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYT 569

Query: 452 SLVSKSSK 459
           +++S  SK
Sbjct: 570 AIISGLSK 577



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 129/245 (52%), Gaps = 6/245 (2%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G   +A +  + ++++G  +  ++ + L+  Y   G +D+A++   ++ K  F       
Sbjct: 369 GQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTY 428

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             +   + + N       +   +++ G  P+   F +++   CKEG + +A+ VF +  K
Sbjct: 429 NTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKK 488

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           +G     V++NTLI+G+ K   L E +RLK  ME  GM  D+YTY+ L++G C   ++++
Sbjct: 489 KGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEE 548

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  LL+E+C +GL  + V +T +I G  K GR +      EA ++ DEM   GL PD   
Sbjct: 549 ALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSE------EAFRLYDEMMAAGLTPDDRV 602

Query: 278 YTILL 282
           YT L+
Sbjct: 603 YTSLV 607



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 17/209 (8%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F   +  Y+T+   L     H +A+  L  +V +KG+  +A  F  +++           
Sbjct: 421 FENDIFTYNTIAGGLCKLNRHEEAKRWLFTMV-EKGVDPNAVSFTIMID----------- 468

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
                ++   G L +A + F+ ++K   +        LID   +            E+  
Sbjct: 469 -----IHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMES 523

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +  +Y +  L+H  C  GK+++A  + +E  ++GL  + V++  +I+G  K    +E
Sbjct: 524 IGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEE 583

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            FRL   M  +G+ PD   Y++L+  L K
Sbjct: 584 AFRLYDEMMAAGLTPDDRVYTSLVANLHK 612


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 32/368 (8%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+ + G  P+V  +N ++H + + G ++ A+M F E    GL    +++N+LING+CKA
Sbjct: 326 LEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKA 385

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            NL E   L   ++ +G+ P V TY+ L++G C+   L++A     EM E+G  P+   +
Sbjct: 386 GNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTY 445

Query: 238 TTLIDGHCK--------------------------NGRID---MAGDMKEARKIVDEMCT 268
           T L++G  K                          N RI    + G   EA ++ + M +
Sbjct: 446 TILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMIS 505

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G++ D +TY I LDG CK G+L+ A  +  +M+  G++ D + +T LI   C  G++ E
Sbjct: 506 RGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLRE 565

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +   ML  GL P   TYT+ I  +C+ G+  + +   ++M  +G  P   TYN L++
Sbjct: 566 ARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIH 625

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
            LC+ G+   A      ML+ G+ P+  TY +L++G+CK GN E+  +L SE    G+  
Sbjct: 626 ALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHP 685

Query: 446 DYACYTSL 453
           D+  + +L
Sbjct: 686 DHCTHNAL 693



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 175/352 (49%), Gaps = 8/352 (2%)

Query: 57  LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP L+  ++L+  Y   G L +A+  F  L++            L+D   R         
Sbjct: 369 LPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARR 428

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+++ G  P V  + +LM+   K   +   +  FDE   +GL     ++NT I+   
Sbjct: 429 FKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAEL 488

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
              +  E F+L  VM   G+  D  TY+  ++GLCK   L DA +L  +M   GL P+ +
Sbjct: 489 ILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCI 548

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T LI  HC+ GR      ++EAR I D M  +GL P  +TYT+ +  +C+ G+L SA 
Sbjct: 549 TYTCLIHAHCERGR------LREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAY 602

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
              ++M++ G+  + V +  LI   CR G+   A +   EML+ GL P+  TYT++ID  
Sbjct: 603 GWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGN 662

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           CK G+ +   RL  EM   G  P   T+NAL  G    GQ K+A   ++ ++
Sbjct: 663 CKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF-DEGQSKHAIQYMENVV 713



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 170/352 (48%), Gaps = 45/352 (12%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           ++E+   G  P +  +N L++  CK G +K+A  +F +  + GL  + +++N L++G+C+
Sbjct: 360 FVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCR 419

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD-------------------- 216
             +L+E  R K  M   G +PDV TY+ L+NG  K   L                     
Sbjct: 420 LGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFA 479

Query: 217 -----DAELLLHE----------MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
                 AEL+L            M  RG++ + V +   +DG CK      +G++K+A  
Sbjct: 480 YNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCK------SGNLKDAYV 533

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           +  +M ++GL PD ITYT L+   C+ G L  A DI   M+  G+    V +T  I  +C
Sbjct: 534 LWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYC 593

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           R G +  A    ++ML+ G++P++ TY ++I   C+ G T   ++   EM   G  P   
Sbjct: 594 RRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKY 653

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL----EGHCKHG 429
           TY  L++G CK G  + A  L   M   G+ PD  T+N L     EG  KH 
Sbjct: 654 TYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHA 705



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 178/385 (46%), Gaps = 49/385 (12%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T+ L  + E+  +G  P +   N+++  L  E +  D + V+ E  + G+  + V++NTL
Sbjct: 178 TLCLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTL 237

Query: 171 INGHCKAKNLDEGFRLKSVMEG--SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           ++   +   +D+  +L   ME    G  P   TY+ +INGL ++  L+ A  L+  M   
Sbjct: 238 LDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RM 296

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
               +   F  LI G+   G ++ AG ++       EM   G+ P  +TY  ++ G  + 
Sbjct: 297 SKKASAFTFNPLITGYFARGSVEKAGALQL------EMENEGIVPTVVTYNTIIHGMFRS 350

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G++E+A     EM   G+  D + + +LI+G+C+ G + EA  +  ++ + GL P   TY
Sbjct: 351 GNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTY 410

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH--------------- 393
            +++D +C+ GD +   R  +EM   G  P V TY  LMNG  K                
Sbjct: 411 NILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLS 470

Query: 394 --------------------GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
                               G    A  L + M+  G+  D +TYNI L+G CK GN +D
Sbjct: 471 KGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKD 530

Query: 434 ----FDKLQSEKGLVSDYACYTSLV 454
               + K+ S+ GL  D   YT L+
Sbjct: 531 AYVLWMKMVSD-GLQPDCITYTCLI 554


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 184/335 (54%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P ++ +  +++ LCK G I  A  +  +  K  + A  V + T+I+  C  KN+++ 
Sbjct: 199 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 258

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L + M+  G+RP+V TY++LI  LC   R  DA  LL +M ER + PN V F+ LID 
Sbjct: 259 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 318

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++PD  TY+ L++GFC    L+ A  + + MI 
Sbjct: 319 FVKEGK------LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 372

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    + V +  LI GFC+  +V E   + REM + GL  +  TY  +I    + GD   
Sbjct: 373 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 432

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ K+M SDG  P + TY+ L++GLCK+G+L+ A ++ + +    + PD  TYNI++E
Sbjct: 433 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 492

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  +   YT+++S
Sbjct: 493 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 527



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 205/443 (46%), Gaps = 46/443 (10%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            ++T++H L  H   S+A  L+  +V++   G    LF     T GT + GL        
Sbjct: 171 TFNTLIHGLFLHNKASEAVALIDRMVAR---GCQPDLF-----TYGTVVNGLC------- 215

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G +D A+   + + K            +ID +         L  + E+ + G  P+
Sbjct: 216 --KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 273

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +N L+  LC  G+  DA  +  +  +R ++   V+F+ LI+   K   L E  +L  
Sbjct: 274 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 333

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PD++TYS+LING C  +RLD+A+ +   M  +   PN V + TLI G CK  
Sbjct: 334 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 393

Query: 249 RID-----------------------------MAGDMKEARKIVDEMCTNGLNPDKITYT 279
           R++                              AGD   A+KI  +M ++G+ PD ITY+
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 453

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           ILLDG CK G LE AL + + + K  +E D   +  +I G C+ GKV +   +   +   
Sbjct: 454 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 513

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+KP+   YT +I  FC+ G  +    L +EM+ DG LP   TYN L+    + G    +
Sbjct: 514 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 573

Query: 400 NMLLDTMLDLGVVPDDITYNILL 422
             L+  M   G V D  T ++++
Sbjct: 574 AELIKEMRSCGFVGDASTISMVI 596



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R+ LP + L    +++  GY P +   + L++  C   +I +A  + D+          V
Sbjct: 112 RSQLP-LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 170

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +FNTLI+G        E   L   M   G +PD++TY  ++NGLCK   +D A  LL +M
Sbjct: 171 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 230

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDM 256
            +  +  + VI+TT+ID  C    ++ A                             G  
Sbjct: 231 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 290

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +A +++ +M    +NP+ +T++ L+D F KEG L  A  +  EMIKR I+ D   +++L
Sbjct: 291 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 350

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+GFC   ++ EA+ M   M+     P+  TY  +I  FCK    + G  L +EM   G 
Sbjct: 351 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 410

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--- 433
           +    TYN L+ GL + G    A  +   M+  GV PD ITY+ILL+G CK+G  E    
Sbjct: 411 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 470

Query: 434 -FDKLQSEK 441
            F+ LQ  K
Sbjct: 471 VFEYLQKSK 479



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 185/358 (51%), Gaps = 12/358 (3%)

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           I +M + +L  ++LG  ++ L   Y   +Y +N+L++  C+  ++  A  V  +  K G 
Sbjct: 74  IAKMNKFDL-VISLGERMQNLRISYD--LYSYNILINCFCRRSQLPLALAVLGKMMKLGY 130

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
               V+ ++L+NG+C  K + E   L   M     +P+  T++ LI+GL   N+  +A  
Sbjct: 131 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 190

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L+  M  RG  P+   + T+++G CK G ID+      A  ++ +M    +  D + YT 
Sbjct: 191 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL------ALSLLKKMEKGKIEADVVIYTT 244

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++D  C   ++  AL++  EM  +GI  + V + +LI   C  G+  +A R+L +M++  
Sbjct: 245 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 304

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  T++ +ID F K G      +L  EM      P + TY++L+NG C H +L  A 
Sbjct: 305 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 364

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            + + M+     P+ +TYN L++G CK    E+  +L    S++GLV +   Y +L+ 
Sbjct: 365 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 422



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 143/302 (47%), Gaps = 6/302 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  FN L+  + K  K      + +      +     S+N LIN  C+   L     +
Sbjct: 62  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 121

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ T S+L+NG C   R+ +A  L+ +M      PN V F TLI G   
Sbjct: 122 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHG--- 178

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              + +     EA  ++D M   G  PD  TY  +++G CK GD++ AL + K+M K  I
Sbjct: 179 ---LFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKI 235

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E D V +T +I   C    V +A  +  EM   G++P+  TY  +I C C  G      R
Sbjct: 236 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 295

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL +M      P V T++AL++   K G+L  A  L D M+   + PD  TY+ L+ G C
Sbjct: 296 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 355

Query: 427 KH 428
            H
Sbjct: 356 MH 357



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 13/216 (6%)

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D+ G+M ++R +          P  + +  LL    K    +  + + + M    I  D
Sbjct: 49  VDLFGEMVQSRPL----------PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYD 98

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             ++  LI+ FCR  ++  A  +L +M+K+G +PD  T + +++ +C          L+ 
Sbjct: 99  LYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 158

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M    + P   T+N L++GL  H +   A  L+D M+  G  PD  TY  ++ G CK G
Sbjct: 159 QMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 218

Query: 430 NPEDFDKL--QSEKGLV-SDYACYTSLVSKSSKYRQ 462
           + +    L  + EKG + +D   YT+++     Y+ 
Sbjct: 219 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKN 254


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 184/335 (54%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P ++ +  +++ LCK G I  A  +  +  K  + A  V + T+I+  C  KN+++ 
Sbjct: 215 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 274

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L + M+  G+RP+V TY++LI  LC   R  DA  LL +M ER + PN V F+ LID 
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++PD  TY+ L++GFC    L+ A  + + MI 
Sbjct: 335 FVKEGK------LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    + V +  LI GFC+  +V E   + REM + GL  +  TY  +I    + GD   
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ K+M SDG  P + TY+ L++GLCK+G+L+ A ++ + +    + PD  TYNI++E
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  +   YT+++S
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 205/443 (46%), Gaps = 46/443 (10%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            ++T++H L  H   S+A  L+  +V++   G    LF     T GT + GL        
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVAR---GCQPDLF-----TYGTVVNGLC------- 231

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G +D A+   + + K            +ID +         L  + E+ + G  P+
Sbjct: 232 --KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +N L+  LC  G+  DA  +  +  +R ++   V+F+ LI+   K   L E  +L  
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PD++TYS+LING C  +RLD+A+ +   M  +   PN V + TLI G CK  
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 249 RID-----------------------------MAGDMKEARKIVDEMCTNGLNPDKITYT 279
           R++                              AGD   A+KI  +M ++G+ PD ITY+
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           ILLDG CK G LE AL + + + K  +E D   +  +I G C+ GKV +   +   +   
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+KP+   YT +I  FC+ G  +    L +EM+ DG LP   TYN L+    + G    +
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 589

Query: 400 NMLLDTMLDLGVVPDDITYNILL 422
             L+  M   G V D  T ++++
Sbjct: 590 AELIKEMRSCGFVGDASTISMVI 612



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R+ LP + L    +++  GY P +   + L++  C   +I +A  + D+          V
Sbjct: 128 RSQLP-LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 186

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +FNTLI+G        E   L   M   G +PD++TY  ++NGLCK   +D A  LL +M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDM 256
            +  +  + VI+TT+ID  C    ++ A                             G  
Sbjct: 247 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +A +++ +M    +NP+ +T++ L+D F KEG L  A  +  EMIKR I+ D   +++L
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+GFC   ++ EA+ M   M+     P+  TY  +I  FCK    + G  L +EM   G 
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--- 433
           +    TYN L+ GL + G    A  +   M+  GV PD ITY+ILL+G CK+G  E    
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486

Query: 434 -FDKLQSEK 441
            F+ LQ  K
Sbjct: 487 VFEYLQKSK 495



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 185/358 (51%), Gaps = 12/358 (3%)

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           I +M + +L  ++LG  ++ L   Y   +Y +N+L++  C+  ++  A  V  +  K G 
Sbjct: 90  IAKMNKFDL-VISLGERMQNLRISYD--LYSYNILINCFCRRSQLPLALAVLGKMMKLGY 146

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
               V+ ++L+NG+C  K + E   L   M     +P+  T++ LI+GL   N+  +A  
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 206

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L+  M  RG  P+   + T+++G CK G ID+      A  ++ +M    +  D + YT 
Sbjct: 207 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL------ALSLLKKMEKGKIEADVVIYTT 260

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++D  C   ++  AL++  EM  +GI  + V + +LI   C  G+  +A R+L +M++  
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  T++ +ID F K G      +L  EM      P + TY++L+NG C H +L  A 
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            + + M+     P+ +TYN L++G CK    E+  +L    S++GLV +   Y +L+ 
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 143/302 (47%), Gaps = 6/302 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  FN L+  + K  K      + +      +     S+N LIN  C+   L     +
Sbjct: 78  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ T S+L+NG C   R+ +A  L+ +M      PN V F TLI G   
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHG--- 194

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              + +     EA  ++D M   G  PD  TY  +++G CK GD++ AL + K+M K  I
Sbjct: 195 ---LFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKI 251

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E D V +T +I   C    V +A  +  EM   G++P+  TY  +I C C  G      R
Sbjct: 252 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 311

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL +M      P V T++AL++   K G+L  A  L D M+   + PD  TY+ L+ G C
Sbjct: 312 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 371

Query: 427 KH 428
            H
Sbjct: 372 MH 373



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 13/216 (6%)

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D+ G+M ++R +          P  + +  LL    K    +  + + + M    I  D
Sbjct: 65  VDLFGEMVQSRPL----------PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYD 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             ++  LI+ FCR  ++  A  +L +M+K+G +PD  T + +++ +C          L+ 
Sbjct: 115 LYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 174

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M    + P   T+N L++GL  H +   A  L+D M+  G  PD  TY  ++ G CK G
Sbjct: 175 QMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234

Query: 430 NPEDFDKL--QSEKGLV-SDYACYTSLVSKSSKYRQ 462
           + +    L  + EKG + +D   YT+++     Y+ 
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKN 270


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 8/312 (2%)

Query: 112 VTLGF--YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           V  GF  + + L  G+ P V +F  L+  +C+ GK + A  +  E G  G     V+ N+
Sbjct: 91  VDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNS 150

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G+C    +D+  ++  +M   G++PDVY+YS  ING CK  ++D+A  L  EM  RG
Sbjct: 151 LMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRG 210

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           + PN V + TLI   C+  R       ++A+ +  +MC  GL+PD + Y+ LLDGFCK+G
Sbjct: 211 VVPNAVTYNTLIKALCQALR------PRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQG 264

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           +L+  L + +EM +R ++ D V +T +I+G CR  KV +A+ +L  ++  GLKPD  TYT
Sbjct: 265 NLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYT 324

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            ++D  C+ G      RL ++M  DG +P   +YN L+ G  +H        L+  M D 
Sbjct: 325 ALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADR 384

Query: 410 GVVPDDITYNIL 421
           G   D +T   L
Sbjct: 385 GFYADAVTRTFL 396



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 166/318 (52%), Gaps = 6/318 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  +LD    P +  FN L+  + +  K +    +F E   RG+     + + LIN
Sbjct: 24  ALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILIN 83

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C   ++D GF +       G +PDV  ++ LI+G+C+  + + A  LL EM   G  P
Sbjct: 84  CFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVP 143

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V   +L+ G+C  G+ID      + RKI   M + GL PD  +Y+I ++G+CK   ++
Sbjct: 144 DVVTCNSLMRGYCSQGKID------KVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKID 197

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+++  EM  RG+  + V +  LI   C+  +  +A+ + R+M   GL PD   Y+ ++
Sbjct: 198 EAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLL 257

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D FCK G+      L +EM+     P +  Y  ++NG+C+  ++K+A  +L  ++  G+ 
Sbjct: 258 DGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLK 317

Query: 413 PDDITYNILLEGHCKHGN 430
           PD  TY  L++G C+ G+
Sbjct: 318 PDVHTYTALVDGLCREGS 335



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 31/369 (8%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL  +V  K   +  SLF   +E RG       L  L+  +  L  +D     F    K 
Sbjct: 46  LLSSVVRMKKYETVVSLFKE-MEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKR 104

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
            F+        LID + R     +  G   E+   G  P V   N LM   C +GKI   
Sbjct: 105 GFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKV 164

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           + +F     +GL     S++  ING+CK + +DE   L   M   G+ P+  TY+ LI  
Sbjct: 165 RKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKA 224

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID----------------- 251
           LC+  R  DA++L  +MC  GL+P+ + ++TL+DG CK G +D                 
Sbjct: 225 LCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPD 284

Query: 252 ------------MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                        +  +K+A++++  +   GL PD  TYT L+DG C+EG +  AL + +
Sbjct: 285 LVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFR 344

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M + G    + ++  L+ G  +        +++ EM   G   D  T T + D F    
Sbjct: 345 KMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKD-FLPGN 403

Query: 360 DTKTGFRLL 368
           D+    +LL
Sbjct: 404 DSPAIKQLL 412



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NLD+     + M     +P +  ++ L++ + +  + +    L  EM  RG+  N    +
Sbjct: 20  NLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLS 79

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+  C    +D          +  +    G  PD + +T L+DG C+ G  E A  + 
Sbjct: 80  ILINCFCFLHHVDYG------FSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLL 133

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM   G   D V   +L+ G+C  GK+ +  ++   M+  GLKPD  +Y++ I+ +CK 
Sbjct: 134 KEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKV 193

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L  EM   G +P   TYN L+  LC+  + ++A +L   M   G+ PD + Y
Sbjct: 194 EKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAY 253

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           + LL+G CK GN ++    F ++Q  + +  D   YT +++   + R+
Sbjct: 254 STLLDGFCKQGNLDEMLVLFQEMQ-RRLVKPDLVVYTIIINGMCRSRK 300


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 185/347 (53%), Gaps = 16/347 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P VY +  L+   C+ G+I  AQ  FDE   + L       + LI+G CKAK   +  R
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M+GSG+  D   Y+AL++GL KE RLD A  +LHEM + G  PN V + +LIDG C
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI-KR 304
           KN   D A ++ E  K V+       +P  +TY  LLDG  + G LE A+ + +EM+ +R
Sbjct: 126 KNNEPDRAQELFEHMKSVE------CSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR 179

Query: 305 GIELDN------VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             ++D+      + ++ LI G C+  +V +A  +L  M   G  PD  TYT+++D  CK 
Sbjct: 180 SHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 239

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                 + +L+EM   G +P + TYN+L++GLC+  ++ +A  L+  M   G  P+ +TY
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYRQ 462
             L++G CK G  +D   + +   +KG   D   Y  L++   K  Q
Sbjct: 300 GTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 346



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 188/348 (54%), Gaps = 13/348 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGY-------SPSVYVFNVLMHKLCKEGKIKDAQMVF 152
           L+D + RT      +  + E+LD          SP+V  ++VL+  LCK  ++  A  + 
Sbjct: 155 LLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELL 214

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           +    RG     +++  L++G CK   +   + +   M  +G  P++ TY++L++GLC+ 
Sbjct: 215 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRA 274

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            R+ DA  L+ +M  RG TPN V + TLIDG CK GR+      K+A  ++ +M   G  
Sbjct: 275 RRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV------KDACAMLADMIDKGGT 328

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD + Y +L++G CK   ++ ++ + +  +  GI+ D V ++++I G CR  ++ EA R+
Sbjct: 329 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 388

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L  +   G  PD   Y+ +ID  CK G     F L + M  DG    V TY+ L++GLCK
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK 448

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            G++  A++LL  M+ +G  P  +TYN L++G C   + ++  +L  E
Sbjct: 449 AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEE 496



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 196/383 (51%), Gaps = 21/383 (5%)

Query: 94  ARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
           ARGC         L+D + + +          E+LD G  P++  +N L+H LC+  ++ 
Sbjct: 219 ARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVS 278

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           DA  +  +   RG     V++ TLI+G CK   + +   + + M   G  PD+  Y+ LI
Sbjct: 279 DALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLI 338

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           NGLCK +++D++  LL      G+ P+ V ++++I G C++ R+D      EA +++  +
Sbjct: 339 NGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLD------EACRLLLYV 392

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
            + G  PD I Y+ L+DG CK G ++ A D+ + M   G + D V ++ LI G C+ G+V
Sbjct: 393 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV 452

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA  +L  M+++G  P   TY  +I   C          L++EM      P+  TYN L
Sbjct: 453 DEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNIL 512

Query: 387 MNGLCKHGQLKNANMLLDT-----MLDLGVVPDDITYNILLEGHCKHGN-PEDFDKLQS- 439
           ++G+C+  ++ +A +LL+      +   G   D I Y+ L++G CK G   E  D  Q  
Sbjct: 513 IHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEM 572

Query: 440 -EKGLVSDYACYTSLVSKSSKYR 461
            + G++ D+  Y+ L+    K +
Sbjct: 573 IDNGVIPDHITYSILLEGLKKSK 595



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 190/392 (48%), Gaps = 16/392 (4%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +D A +CF  +R          C  LID + +       L  +  +   G      ++
Sbjct: 23  GEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIY 82

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L+  L KE ++  A  +  E    G     V++N+LI+G CK    D    L   M+ 
Sbjct: 83  TALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKS 142

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-------LTPNDVIFTTLIDGHC 245
               P + TY+ L++GL +  +L+ A  L  EM +R         +PN + ++ LIDG C
Sbjct: 143 VECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLC 202

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  R+  A ++ E+ K        G +PD ITYTIL+DG CKE  + +A ++ +EM+  G
Sbjct: 203 KANRVSQAVELLESMK------ARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 256

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              + V + +L+ G CR  +V +A  ++R+M   G  P+  TY  +ID  CK G  K   
Sbjct: 257 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 316

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +L +M   G  P +  YN L+NGLCK  Q+  +  LL   +  G+ PD +TY+ ++ G 
Sbjct: 317 AMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 376

Query: 426 CKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           C+    ++  +L      +G   D   Y++L+
Sbjct: 377 CRSNRLDEACRLLLYVKSRGCPPDVILYSTLI 408



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + + N  +  +     +   G SP V  + +L+  LCKE K+  A  V  E    G
Sbjct: 197 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 256

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++N+L++G C+A+ + +   L   M   G  P+V TY  LI+GLCK  R+ DA 
Sbjct: 257 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 316

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L +M ++G TP+ +I+  LI+G CK  ++D      E+  ++    + G+ PD +TY+
Sbjct: 317 AMLADMIDKGGTPDLMIYNMLINGLCKADQVD------ESIALLRRAVSGGIKPDVVTYS 370

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ G C+   L+ A  +   +  RG   D + ++ LI G C+ GKV EA  +   M   
Sbjct: 371 SVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGD 430

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G   D  TY+ +ID  CK G       LL  M   G  P+  TYN+L+ GLC    L  A
Sbjct: 431 GCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEA 490

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCK 427
             L++ M      P  +TYNIL+ G C+
Sbjct: 491 IELVEEMERSNCAPSAVTYNILIHGMCR 518



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 157/328 (47%), Gaps = 47/328 (14%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+V  +  L+  LCK G++KDA  +  +   +G     + +N LING CKA  +DE 
Sbjct: 291 GCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDES 350

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L       G++PDV TYS++I GLC+ NRLD+A  LL  +  RG  P+ ++++TLIDG
Sbjct: 351 IALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDG 410

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G++D A D+ E       M  +G + D +TY+ L+DG CK G ++ A  +   M++
Sbjct: 411 LCKAGKVDEAFDLYEV------MAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVR 464

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI----------- 352
            G     + + +LI G C    + EA  ++ EM +    P   TY ++I           
Sbjct: 465 MGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDS 524

Query: 353 -----------------------------DCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
                                        D  CK G         +EM  +G +P   TY
Sbjct: 525 AVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITY 584

Query: 384 NALMNGLCKHGQLKN-ANMLLDTMLDLG 410
           + L+ GL K   L    +++LD M+ LG
Sbjct: 585 SILLEGLKKSKDLHELRHLVLDQMVQLG 612



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 2/240 (0%)

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           + R+N         L +   G  P V +++ L+  LCK GK+ +A  +++     G  A 
Sbjct: 376 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDAD 435

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V+++TLI+G CKA  +DE   L + M   G  P   TY++LI GLC  N LD+A  L+ 
Sbjct: 436 VVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 495

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM      P+ V +  LI G C+  R+D A  + E  K    +   G   D I Y+ L+D
Sbjct: 496 EMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAK-ARCVAAGGTALDTIAYSSLID 554

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM-LREMLKVGLK 342
           G CK G +  ALD  +EMI  G+  D++ ++ L+ G  +   + E   + L +M+++G +
Sbjct: 555 GLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 614


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/498 (28%), Positives = 237/498 (47%), Gaps = 53/498 (10%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSK-------KGMGSSASLFASILETRGTHLPG 59
           L A  T+ H L +++  S+ R LL+ +V+        +G+GS A +   I E +      
Sbjct: 78  LTAVVTLSHRLYSNRRFSEMRLLLNSVVNDGFYERPVEGLGS-AMVDCDISEEKFEFWEK 136

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
              D +  VYVD G  ++ ++ F  + K    I  R C   +    +     + L F+  
Sbjct: 137 F-FDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRR 195

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++D G   +VY   +++  LC+ G+++ ++ +  EF  +G+   A ++NT+IN + K ++
Sbjct: 196 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRD 255

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                ++  VM+  G+  +  TY+ LI    K  +++D E L  EM ERG+  +  ++T+
Sbjct: 256 FSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTS 315

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI  +C+ G I      K A  + DE+   GL P   TY  L+DG CK G++ +A  +  
Sbjct: 316 LISWNCRKGNI------KRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMN 369

Query: 300 EMIKRGIELDNVAFTALISGFCRGG----------------------------------- 324
           EM  +G+ +  V F  LI+G+CR G                                   
Sbjct: 370 EMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLK 429

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +  EA++ L  M++ G++    +YT +ID +CK G+ +   RL  EM S    P   TYN
Sbjct: 430 RYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYN 489

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
            ++   CK G++K A  L   M   G+ PD  TY  L+ G C   N ++  +L SE   K
Sbjct: 490 VMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLK 549

Query: 442 GLVSDYACYTSLVSKSSK 459
           GL  +   YT ++S  SK
Sbjct: 550 GLDQNSVTYTVMISGLSK 567



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 149/272 (54%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  PS + +  L+  +CK G++  A+++ +E   +G++ T V FNTLING+C+  
Sbjct: 335 ELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKG 394

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE   +  VME  G + DV+T + + +   +  R D+A+  L  M E G+  + V +T
Sbjct: 395 MIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYT 454

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID +CK G ++      EA+++  EM +  + P+ ITY +++  +CK+G ++ A  + 
Sbjct: 455 NLIDVYCKEGNVE------EAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLW 508

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M   G++ D+  +T+LI G C    V EA R+  EM   GL  +  TYT++I    K 
Sbjct: 509 ANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKA 568

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G +   F L  E++  G+    + Y AL+  +
Sbjct: 569 GKSDEAFGLYDEIKRKGYTIDNKVYTALIGSM 600



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 6/249 (2%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           V K G   +A +  + ++++G ++  +V + L+  Y   G +D+A   + ++ K  F+  
Sbjct: 355 VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQAD 414

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
              C  +     R         +   +++ G   S   +  L+   CKEG +++A+ +F 
Sbjct: 415 VFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFV 474

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   + +   A+++N +I  +CK   + E  +L + M+ +GM PD YTY++LI+G C  +
Sbjct: 475 EMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIAD 534

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            +D+A  L  EM  +GL  N V +T +I G  K G+ D      EA  + DE+   G   
Sbjct: 535 NVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSD------EAFGLYDEIKRKGYTI 588

Query: 274 DKITYTILL 282
           D   YT L+
Sbjct: 589 DNKVYTALI 597



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 134/282 (47%), Gaps = 21/282 (7%)

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLIDGHCKNGRI 250
           S ++PD+     L + L    R  +  LLL+ +   G    P + + + ++D      + 
Sbjct: 72  SNLKPDLTAVVTLSHRLYSNRRFSEMRLLLNSVVNDGFYERPVEGLGSAMVDCDISEEKF 131

Query: 251 DMA--------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +                G  +E  ++ D M   GL+ D+ +  + L    K   ++  L+
Sbjct: 132 EFWEKFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLE 191

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
             + M+  G+++   + T ++ G CR G+V +++++++E    G+KP+  TY  +I+ + 
Sbjct: 192 FFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYL 251

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K+ D     ++LK M+ DG +    TY  L+    K+G++ +   L D M + G+  D  
Sbjct: 252 KHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIH 311

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            Y  L+  +C+ GN +     FD+L +EKGL+     Y +L+
Sbjct: 312 VYTSLISWNCRKGNIKRAFLLFDEL-TEKGLLPSSHTYGALI 352


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 183/335 (54%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  + V+++ LCK G    A  + ++  +  L    + +NT+I+G CK K++D+ 
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 275

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M ER + P+   F+ LID 
Sbjct: 276 LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 335

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++P  +TY+ L++GFC    L+ A  + + M+ 
Sbjct: 336 FVKEGK------LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    D V +  LI GFC+  +V E   + REM + GL  +  TY ++I    + GD   
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + KEM SDG  P + TYN L++GLCK+G+L+ A ++ + +    + P   TYNI++E
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  D   Y +++S
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMIS 544



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 182/331 (54%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V ++N ++  LCK   + DA  +F E   +G+    V++++LI+  C      +  RL
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            S M    + PDV+T+SALI+   KE +L +AE L  EM +R + P+ V +++LI+G C 
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + R+D      EA+++ + M +    PD +TY  L+ GFCK   +E  +++ +EM +RG+
Sbjct: 374 HDRLD------EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V +  LI G  + G    A+ + +EM+  G+ P+  TY  ++D  CKNG  +    
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + ++     P + TYN ++ G+CK G++++   L   +   GV PD + YN ++ G C
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           + G+ E+ D L     E G + +  CY +L+
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 203/386 (52%), Gaps = 13/386 (3%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LDDA+  F  +++   F       + L+  + + N   V +    ++ + G   + Y ++
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSK-LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++  C+  ++  A  V  +  K G     V+ ++L+NG+C +K + E   L   M  +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G +P+  T++ LI+GL   N+  +A  L+  M  +G  P+ V +  +++G CK G  D+A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            ++      +++M    L P  + Y  ++DG CK   ++ AL++ KEM  +GI  + V +
Sbjct: 241 FNL------LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           ++LIS  C  G+  +A R+L +M++  + PD  T++ +ID F K G      +L  EM  
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P++ TY++L+NG C H +L  A  + + M+     PD +TYN L++G CK+   E+
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414

Query: 434 ----FDKLQSEKGLVSDYACYTSLVS 455
               F ++ S++GLV +   Y  L+ 
Sbjct: 415 GMEVFREM-SQRGLVGNTVTYNILIQ 439



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 201/432 (46%), Gaps = 26/432 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE----------------- 51
            ++T++H L  H   S+A  L+  +V+K G       +  ++                  
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNK 246

Query: 52  -TRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
             +G   PG L+ + ++        +DDA+  F+ +     R        LI  +     
Sbjct: 247 MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
            +       ++++   +P V+ F+ L+    KEGK+ +A+ ++DE  KR +  + V++++
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 366

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING C    LDE  ++   M      PDV TY+ LI G CK  R+++   +  EM +RG
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 426

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L  N V +  LI G  + G  DMA      ++I  EM ++G+ P+ +TY  LLDG CK G
Sbjct: 427 LVGNTVTYNILIQGLFQAGDCDMA------QEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            LE A+ + + + +  +E     +  +I G C+ GKV +   +   +   G+KPD   Y 
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I  FC+ G  +    L KEM+ DG LP    YN L+    + G  + +  L+  M   
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 600

Query: 410 GVVPDDITYNIL 421
           G   D  T  ++
Sbjct: 601 GFAGDASTIGLV 612



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG  ++  D  +A  +  EM  +   P  I ++ LL    K    +  + + ++M   G
Sbjct: 54  RNGLSELKLD--DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG 111

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  ++  ++ LI+ FCR  ++  A  +L +M+K+G +P+  T + +++ +C +       
Sbjct: 112 IPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV 171

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ +M   G+ P   T+N L++GL  H +   A  L+D M+  G  PD +TY +++ G 
Sbjct: 172 ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGL 231

Query: 426 CKHGNPE 432
           CK G+ +
Sbjct: 232 CKRGDTD 238


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 193/376 (51%), Gaps = 45/376 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P     N L+  LC  GK+K+A    D   ++  H   VS+ TLING CK+ 
Sbjct: 113 KILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSG 172

Query: 179 NLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
                 +L   +EG  + RPDV  Y+A+I+  CK+  + DA  L  EM  + + PN V F
Sbjct: 173 ETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTF 232

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            +LI G C      + G +KEA  +++EM  N +NP+  T+ IL+DG CKEG+++ A  +
Sbjct: 233 NSLIYGFC------IVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 298 RKEMIKRGIELDNVAFTAL-----------------------------------ISGFCR 322
              MIK+G+E + V +T+L                                   I+G C+
Sbjct: 287 LSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
              V EA ++ +EM    + P+  TY+ +ID  CK+G     + L+ E+ + G    + T
Sbjct: 347 NKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIIT 406

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-- 440
           YN+L+NGLCK+ Q+  A  LL  M D G+ PD  TY  L++G CK+G  +D  ++  +  
Sbjct: 407 YNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLL 466

Query: 441 -KGLVSDYACYTSLVS 455
            KG   +   YT +++
Sbjct: 467 CKGYPLNIRMYTVMIN 482



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 176/331 (53%), Gaps = 6/331 (1%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            +ID   +  L       Y E++     P+V  FN L++  C  G++K+A  + +E    
Sbjct: 199 AIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLN 258

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            ++    +FN LI+G CK   + +   + SVM   G+ P+V TY++L++G      ++ A
Sbjct: 259 NVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKA 318

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           + + + +  RG+TPN   ++ +I+G CKN  +D      EA K+  EM    + P+ +TY
Sbjct: 319 KHVFNTISLRGVTPNVHSYSVMINGLCKNKMVD------EAVKLFKEMHLKNMTPNTVTY 372

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           + L+DG CK G +    D+  E+  RG   + + + +L++G C+  +V +A  +L +M  
Sbjct: 373 SSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKD 432

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G++PD +TYT ++D  CKNG  K   R+ +++   G+   +  Y  ++NGLCK G    
Sbjct: 433 EGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDE 492

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           A  LL  M D G +PD +TY  L+    K+ 
Sbjct: 493 ALSLLSQMEDNGCMPDAVTYETLISALFKNN 523



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 162/282 (57%), Gaps = 6/282 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+VY FN+L+  LCKEG++K A  V     K+G+    V++ +L++G+   K +++   
Sbjct: 261 NPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKH 320

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + + +   G+ P+V++YS +INGLCK   +D+A  L  EM  + +TPN V +++LIDG C
Sbjct: 321 VFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLC 380

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+GRI    D+      +DE+   G   + ITY  LL+G CK   ++ A+ +  +M   G
Sbjct: 381 KSGRISDVWDL------IDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+ D   +T L+ G C+ G++ +A+R+ +++L  G   +   YT++I+  CK G      
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEAL 494

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
            LL +M  +G +P   TY  L++ L K+ +   A  LL  M+
Sbjct: 495 SLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMI 536



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 131/269 (48%), Gaps = 6/269 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G    A+   S++  +G     +   +LM  Y  +  ++ A   F  +          
Sbjct: 276 KEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVH 335

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               +I+ + +  +    +  + E+     +P+   ++ L+  LCK G+I D   + DE 
Sbjct: 336 SYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEI 395

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             RG  A  +++N+L+NG CK   +D+   L + M+  G++PD+ TY+ L++GLCK  RL
Sbjct: 396 NNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRL 455

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            DA+ +  ++  +G   N  ++T +I+G CK G  D      EA  ++ +M  NG  PD 
Sbjct: 456 KDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFD------EALSLLSQMEDNGCMPDA 509

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKR 304
           +TY  L+    K      A+ + +EMI R
Sbjct: 510 VTYETLISALFKNNKNGKAVKLLREMIAR 538



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           N   P    +  +L    K    + A+   ++M  +GI+ +   F  LI+ F    ++  
Sbjct: 47  NNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNF 106

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE-MRSDGHLPAVETYNALM 387
           A  M+ ++LK+G +PD  T   ++   C NG  K         +R   HL  V +Y  L+
Sbjct: 107 AFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQV-SYGTLI 165

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVV-PDDITYNILLEGHCKHGNPEDFDKLQSE---KGL 443
           NGLCK G+ + A  LL  +  L +V PD I Y  +++  CK     D   L SE   K +
Sbjct: 166 NGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKI 225

Query: 444 VSDYACYTSLV 454
             +   + SL+
Sbjct: 226 YPNVVTFNSLI 236


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 224/453 (49%), Gaps = 16/453 (3%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG---LVLDAL 65
           A++ +   L A  ++ QA  LL  ++  +   +   + +S+         G   +VLD L
Sbjct: 122 AFAHLAVSLCAAGLYPQANGLLDQMI--RAYPTPPLVLSSVHRALSGSDQGRRPVVLDVL 179

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +  Y   G + D  +   L++        R C  L+  ++R +   +       +   G 
Sbjct: 180 VDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGI 239

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP VY ++ L+   CK   ++ A+ V +E  + G     V++NTLI G C+A  ++E F 
Sbjct: 240 SPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFG 299

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            K  ME  G+ PD +TY A+INGLCK  R D A+ LL EM   GL PN V+++TLIDG  
Sbjct: 300 YKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFM 359

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G  D      EA KIV EM   G+ P+KITY  L+ G CK G +  A  I K+M K G
Sbjct: 360 RQGNAD------EAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D + +  +I G  R     EA  +L EM K G+ P+  TY+++I+  C+ G+++   
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERAS 473

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL++M +DG  P    Y  L++G C+ G    A   L  M    + PD   YN L+ G 
Sbjct: 474 GLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGL 533

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
              G  ++    +D++  EKG   +   Y  L+
Sbjct: 534 SNVGKMDEAIEYYDEML-EKGFQPNDFTYGGLI 565



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 178/338 (52%), Gaps = 9/338 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP+VY ++++++ LC+ G+ + A  + ++    GL   A  +  LI+G+C+  +    
Sbjct: 448 GISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLA 507

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M    + PD+Y Y++LI GL    ++D+A     EM E+G  PND  +  LI G
Sbjct: 508 CETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHG 567

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +       MAG++++A +++ +M  +GLNP+   Y  +L+G+ K  +LE      K M++
Sbjct: 568 Y------SMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE 621

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  DN  +  +I      G +  A  +L  + K GL PD   Y  +I  FCK  D + 
Sbjct: 622 KGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEK 681

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL EM   G  P +  YNAL++G CK   + +A  + ++++  G+ P+ +TY  L++
Sbjct: 682 AVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLID 741

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSS 458
           G+CK G+  D   L +E   +G+  D   Y+ L +  S
Sbjct: 742 GYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCS 779



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 30/352 (8%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   +++  G  P+ +V+  L+   C+EG    A     +  +  L      +N+LI G 
Sbjct: 474 GLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGL 533

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
                +DE       M   G +P+ +TY  LI+G      L+ AE LLH+M   GL PND
Sbjct: 534 SNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPND 593

Query: 235 VIFTTLIDGHCKNGRID-----------------------------MAGDMKEARKIVDE 265
            I+  +++G+ K+  ++                              +G M+ A  ++  
Sbjct: 594 FIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSV 653

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           +  NGL PD + Y  L+ GFCK  D+E A+ +  EM K+GIE     + ALI GFC+   
Sbjct: 654 IEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDD 713

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           +  A  +   ++  GL P+  TYT +ID +CK GD +    L  EM ++G  P    Y+ 
Sbjct: 714 ISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSV 773

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           L  G    G L+ A  + + M+  G      ++N L+ G CK G  ++  K 
Sbjct: 774 LAAGCSNSGDLQQALFITEEMIARGYAIIS-SFNTLVHGFCKRGKLQETVKF 824



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 133/287 (46%), Gaps = 23/287 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P   ++  L+   CK   ++ A  + DE  K+G+      +N LI+G CK+ ++   
Sbjct: 658 GLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHA 717

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + +   G+ P+  TY+ LI+G CK   + DA  L +EM   G+ P+  +++ L  G
Sbjct: 718 RNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAG 777

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C N     +GD+++A  I +EM   G      ++  L+ GFCK G L+  +     M+ 
Sbjct: 778 -CSN-----SGDLQQALFITEEMIARGYAIIS-SFNTLVHGFCKRGKLQETVKFLHVMMD 830

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + I    +    ++ G    GK+ EA  +  E     L+  +A++           DT  
Sbjct: 831 KDIVPSLLTVENIVIGLGEAGKLSEAHTIFVE-----LQQKNASHR----------DTDH 875

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
              L  +M + G +P ++  + ++   CK G L  A ML D ++  G
Sbjct: 876 LSSLFTDMINQGLVP-LDVIHNMIQSHCKQGYLDKALMLHDALVAKG 921



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 29/250 (11%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   E+   G  P +  +N L+   CK   I  A+ +F+    +GL    V++ TLI+
Sbjct: 682 AVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLID 741

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CKA ++ +   L + M   G+ PD + YS L  G      L  A  +  EM  RG   
Sbjct: 742 GYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYA- 800

Query: 233 NDVI--FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
             +I  F TL+ G CK G+      ++E  K +  M    + P  +T   ++ G  + G 
Sbjct: 801 --IISSFNTLVHGFCKRGK------LQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGK 852

Query: 291 LESALDIRKEMIKRGIE-LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           L  A  I  E+ ++     D    ++L +                +M+  GL P D  + 
Sbjct: 853 LSEAHTIFVELQQKNASHRDTDHLSSLFT----------------DMINQGLVPLDVIHN 896

Query: 350 MVIDCFCKNG 359
           M I   CK G
Sbjct: 897 M-IQSHCKQG 905



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 124/292 (42%), Gaps = 19/292 (6%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           ++H + S   M ++ S+  S++E  G     L+  +L+  +     ++ A+     + K 
Sbjct: 634 VIHNLSSSGHMQAAVSVL-SVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKK 692

Query: 89  YFRIPARGC-RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
               P   C   LID   +++  +     +  I+  G  P+   +  L+   CK G I+D
Sbjct: 693 GIE-PGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRD 751

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  +++E    G+   A  ++ L  G   + +L +   +   M   G    + +++ L++
Sbjct: 752 AIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYA-IISSFNTLVH 810

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------- 253
           G CK  +L +    LH M ++ + P+ +    ++ G  + G++  A              
Sbjct: 811 GFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASH 870

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            D      +  +M   GL P  + +  ++   CK+G L+ AL +   ++ +G
Sbjct: 871 RDTDHLSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALMLHDALVAKG 921


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 188/339 (55%), Gaps = 9/339 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P+    N LM  LC +G++K +    D+   +G     VS+ TL+NG CK  
Sbjct: 70  KILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG 129

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L  ++E    RP+V  Y+ +I+GLCK+  +++A  L  EM  RG+ PN + ++
Sbjct: 130 ETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C      +AG + EA  +++EM    +NP+  TYTIL+D  CKEG ++ A ++ 
Sbjct: 190 TLIYGFC------LAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLL 243

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M K G++ + V++  L+ G+C  G+V  A++M   M++ G+ P+  +Y ++ID  CK+
Sbjct: 244 AVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKS 303

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   LL+E+     +P   TY++L++G CK G++ +A  LL  M   G   D +TY
Sbjct: 304 KRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTY 363

Query: 419 NILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             LL+  CK+ N +    L     E+G+  +   YT+L+
Sbjct: 364 TSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALI 402



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 191/338 (56%), Gaps = 9/338 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I D    P+V ++N ++  LCK+  + +A  ++ E   RG+    ++++TLI G C A  
Sbjct: 141 IEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQ 200

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L E F L + M    + P+VYTY+ L++ LCKE ++ +A+ LL  M + G+ PN V + T
Sbjct: 201 LMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNT 260

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+DG+C      + G+++ A+++   M   G+NP+  +Y I++D  CK   ++ A+++ +
Sbjct: 261 LMDGYC------LIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLR 314

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           E++ + +  + V +++LI GFC+ G++  A  +L+EM   G   D  TYT ++D  CKN 
Sbjct: 315 EVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQ 374

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +      L  +M+  G  P   TY AL++GLCK G+ KNA  L   +L  G   +  TYN
Sbjct: 375 NLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYN 434

Query: 420 ILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           +++ G CK G  ++   ++S   E G + D   +  ++
Sbjct: 435 VMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 167/309 (54%), Gaps = 12/309 (3%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CL  ++M         G   E++    +P+VY + +LM  LCKEGK+K+A+ +     K 
Sbjct: 196 CLAGQLMEA------FGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    VS+NTL++G+C    +    ++   M   G+ P+VY+Y+ +I+ LCK  R+D+A
Sbjct: 250 GVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEA 309

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL E+  + + PN V +++LIDG CK GRI  A D+      + EM   G   D +TY
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDL------LKEMYHRGQPADVVTY 363

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T LLD  CK  +L+ A  +  +M +RGI+ +   +TALI G C+GG+   A+++ + +L 
Sbjct: 364 TSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLV 423

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G + +  TY ++I   CK G       +  +M  +G +P   T+  ++  L +  Q   
Sbjct: 424 KGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDK 483

Query: 399 ANMLLDTML 407
           A  LL  M+
Sbjct: 484 AEKLLHEMI 492



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 167/332 (50%), Gaps = 9/332 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P +  FN ++  L K      A  +F +   +G+     + N LIN  C    +   F 
Sbjct: 7   TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT 66

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   +   G +P+  T + L+ GLC +  +  +     ++  +G   + V + TL++G C
Sbjct: 67  VLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLC 126

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K       G+ + A K++  +      P+ + Y  ++DG CK+  +  A D+  EM  RG
Sbjct: 127 K------IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  + + ++ LI GFC  G+++EA  +L EM+   + P+  TYT+++D  CK G  K   
Sbjct: 181 IFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAK 240

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL  M  +G  P V +YN LM+G C  G+++NA  +  TM+  GV P+  +YNI+++  
Sbjct: 241 NLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRL 300

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           CK    ++   L  E   K +V +   Y+SL+
Sbjct: 301 CKSKRVDEAMNLLREVLHKNMVPNTVTYSSLI 332



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 9/301 (2%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           + FN ++    K K+      L   M+  G+ PD++T + LIN  C   ++  +  +L +
Sbjct: 11  MEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGK 70

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           + + G  PN +   TL+ G C      + G++K++    D++   G   D+++Y  LL+G
Sbjct: 71  ILKLGYQPNTITLNTLMKGLC------LKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNG 124

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK G+  SAL + + +  R    + V +  +I G C+   V EA  +  EM   G+ P+
Sbjct: 125 LCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPN 184

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY+ +I  FC  G     F LL EM      P V TY  LM+ LCK G++K A  LL 
Sbjct: 185 VITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLA 244

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYR 461
            M   GV P+ ++YN L++G+C  G  ++  ++     +KG+  +   Y  ++ +  K +
Sbjct: 245 VMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSK 304

Query: 462 Q 462
           +
Sbjct: 305 R 305



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 11/306 (3%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G    A    +++   G     +  + LM  Y  +G + +A Q F  + +        
Sbjct: 232 KEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVY 291

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               +IDR+ ++      +    E+L     P+   ++ L+   CK G+I  A  +  E 
Sbjct: 292 SYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEM 351

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             RG  A  V++ +L++  CK +NLD+   L   M+  G++P+ YTY+ALI+GLCK  R 
Sbjct: 352 YHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRH 411

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +A+ L   +  +G   N   +  +I G CK G +D A  MK       +M  NG  PD 
Sbjct: 412 KNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMK------SKMEENGCIPDA 465

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +T+ I++    ++   + A  +  EMI +    D + F     G     +  +AE++L E
Sbjct: 466 VTFEIIIRSLFEKDQNDKAEKLLHEMIAK----DLLRFRDF-HGERSPNENDKAEKLLHE 520

Query: 336 MLKVGL 341
           M+  GL
Sbjct: 521 MIAKGL 526



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 23/227 (10%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           +++Y+ M+  L   K   +A +LL  ++ K  + ++ + ++S+++               
Sbjct: 290 VYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVT-YSSLIDG-------------- 334

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFR-IPARGCR--CLIDRMMRTNLPTVTLGFYLEILDY 123
             +  LG +  A+    LL++ Y R  PA       L+D + +          ++++ + 
Sbjct: 335 --FCKLGRITSALD---LLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKER 389

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y +  L+  LCK G+ K+AQ +F     +G      ++N +I+G CK   LDE 
Sbjct: 390 GIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEA 449

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
             +KS ME +G  PD  T+  +I  L ++++ D AE LLHEM  + L
Sbjct: 450 LAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDL 496



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML V   P    +  ++    K     T   L K+M+  G  P + T N L+N  C  GQ
Sbjct: 1   MLLVRDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQ 60

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYT 451
           +  +  +L  +L LG  P+ IT N L++G C  G  +      DK+ ++ G   D   Y 
Sbjct: 61  MTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQ-GFQMDQVSYA 119

Query: 452 SLVSKSSKYRQKR 464
           +L++   K  + R
Sbjct: 120 TLLNGLCKIGETR 132


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 182/337 (54%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP +  F V+++ LC+E ++ +A  V +   + G     V++N  I+G CKA+ +D+ F+
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M+     P   TY+AL++GL K  RLD+A  +L +M E+G +P    +T +IDG  
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR- 304
           K GR++      EAR+I  +M  NG  PD   YT L+ G CK G  E A  + KE   R 
Sbjct: 124 KAGRVE------EARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARK 177

Query: 305 ---GIELDNVAFTALISGFCRGGKVVEAERML-REMLKVGLKPDDATYTMVIDCFCKNGD 360
                  D V +T+LI G C+ G+++EA ++   E ++ G  PD  TYT +ID  CK G 
Sbjct: 178 HHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGR 237

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            + G     EMR+ G+ P   TY AL++G  K   +  A+ +   ML  G V   +TYNI
Sbjct: 238 VEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNI 297

Query: 421 LLEGHCKHGN-PEDFDKL--QSEKGLVSDYACYTSLV 454
           +L+G CK G   E +       E+G V+    Y++L+
Sbjct: 298 ILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALM 334



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 164/309 (53%), Gaps = 11/309 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +  L+  L K G++ +A  V ++  ++G   T  ++  +I+G  KA  ++E  R+
Sbjct: 75  PTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 134

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER----GLTPNDVIFTTLID 242
              M G+G RPD + Y+ALI GLCK  + ++A  L  E   R       P+ V +T+LID
Sbjct: 135 FVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLID 194

Query: 243 GHCKNGRIDMAGDMKEARKIVD-EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           G CK GRI       EAR++ D E    G  PD +TYT ++DG CK G +E   +   EM
Sbjct: 195 GLCKAGRI------LEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 248

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RG E D V + ALI GF +   + +A R+ R+ML+ G      TY +++D  CK G  
Sbjct: 249 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRV 308

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
              +     M   G +  V TY+ALM+G C  G +  A  L   MLD G  P+ ++YNI+
Sbjct: 309 AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII 368

Query: 422 LEGHCKHGN 430
           + G C+ G 
Sbjct: 369 IRGLCRAGK 377



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 176/337 (52%), Gaps = 10/337 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFD-EFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           P V  +  L+  LCK G+I +A+ VFD E  +RG    AV++ ++I+G CK   ++EG  
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G  PD  TY+ALI+G  K   +  A  +  +M + G   + V +  ++DG C
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GR+       EA      M   G     +TY+ L+DGFC EG++ +A+++ + M+ RG
Sbjct: 304 KAGRV------AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG 357

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT-G 364
            E + V++  +I G CR GK+ +A     ++L+  L PD  T+   +   C+  DT + G
Sbjct: 358 CEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDG 417

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L + M S G  P + +Y+ LM+G+C+ G L+ A  +   M+  GV PD + +N L+  
Sbjct: 418 VELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRW 477

Query: 425 HCKHGNPEDFDKL--QSEKGLVSDYACYTSLVSKSSK 459
            C  G  ++  ++  + E+    D   Y SL+   S+
Sbjct: 478 LCIAGRVDEALEVFRELERRSAPDAWSYWSLLDGLSR 514



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 169/334 (50%), Gaps = 11/334 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D +++       +    ++++ G SP++  + V++  L K G++++A+ +F +    G
Sbjct: 83  LVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNG 142

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG----SGMRPDVYTYSALINGLCKENRL 215
               A  +  LI G CK+   +E + L          +   PDV TY++LI+GLCK  R+
Sbjct: 143 CRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRI 202

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
            +A ++   E  ERG  P+ V +T++IDG CK GR++      E  +   EM   G  PD
Sbjct: 203 LEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVE------EGCERFHEMRNRGYEPD 256

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY  L+DGF K   +  A  + ++M++ G  +  V +  ++ G C+ G+V EA     
Sbjct: 257 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 316

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M + G      TY+ ++D FC  G+      L + M   G  P + +YN ++ GLC+ G
Sbjct: 317 AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 376

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +L  A    + +L   + PD  T+N  L G C+ 
Sbjct: 377 KLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQR 410



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 6/282 (2%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           LG +++  + F  +R   +   A     LID  M+  +       Y ++L  G   S   
Sbjct: 235 LGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVT 294

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+++  LCK G++ +A   F    +RG  AT V+++ L++G C   N+     L   M 
Sbjct: 295 YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 354

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P++ +Y+ +I GLC+  +L  A     ++ +R L P+   F   + G C+  R+D
Sbjct: 355 DRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ--RLD 412

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
              D  E   + + M + G +P+  +Y+IL+DG C+ G LE AL+I +EM+ RG+  D V
Sbjct: 413 TVSDGVE---LFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVV 469

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
            F  LI   C  G+V EA  + RE+ +    PD  +Y  ++D
Sbjct: 470 VFNTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLD 510



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 3/128 (2%)

Query: 108 NLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
            L TV+ G  L   ++  G SP+++ +++LM  +C+ G ++ A  +F E   RG+    V
Sbjct: 410 RLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVV 469

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
            FNTLI   C A  +DE   +   +E     PD ++Y +L++GL +  R+++A LL   M
Sbjct: 470 VFNTLIRWLCIAGRVDEALEVFRELERRSA-PDAWSYWSLLDGLSRCERMEEARLLSFHM 528

Query: 226 CERGLTPN 233
             +G  P 
Sbjct: 529 KLQGCAPR 536


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 197/338 (58%), Gaps = 6/338 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +++RM ++    + L  + ++ +     SV  +++++  LCK+G + DA  +F+E   +G
Sbjct: 215 VLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKG 274

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + A  V+++++I G C     D+G ++   M G  + P+V T+SALI+   KE +L +A+
Sbjct: 275 IKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAK 334

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L +EM  RG+ P+ + +++LIDG CK  R+       EA +++D M + G  P+ +TY+
Sbjct: 335 ELYNEMVARGIAPDTITYSSLIDGFCKENRLG------EANQMLDLMVSKGCEPNIVTYS 388

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL++ +CK   +++ + +  E+  +G+  D V +  L+ GFC+ GK+  A+ + +EM+  
Sbjct: 389 ILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSR 448

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ P   TY +++D  C NG+ +    + ++M+    +  +  YN +++G+C   ++ +A
Sbjct: 449 GVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDA 508

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             L  ++   GV PD +TYN+++ G CK G+  + D L
Sbjct: 509 WSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADML 546



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 182/326 (55%), Gaps = 10/326 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++  Y P+V   N L++ LC +G++ +A ++ D   K G  A  +++  ++N  CK+ N
Sbjct: 165 MVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGN 224

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 L   ME   ++  V  YS +I+ LCK+  LDDA  L +EM  +G+  + V +++
Sbjct: 225 TALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSS 284

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I G C +GR D      +  K++ EM    + P+ +T++ L+D F KEG L  A ++  
Sbjct: 285 IIGGLCNDGRWD------DGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYN 338

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ RGI  D + +++LI GFC+  ++ EA +ML  M+  G +P+  TY+++I+ +CK  
Sbjct: 339 EMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAK 398

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               G RL  E+ S G +    TYN L+ G C+ G+L  A  L   M+  GV P  +TY 
Sbjct: 399 RVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYG 458

Query: 420 ILLEGHCKHGN----PEDFDKLQSEK 441
           ILL+G C +G      E F+K+Q  +
Sbjct: 459 ILLDGLCDNGELQKALEIFEKMQKSR 484



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 187/347 (53%), Gaps = 9/347 (2%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + LGF  E+   G   ++Y  N++++  C++ K+  A  V     K G     ++F+TLI
Sbjct: 87  LVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLI 146

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG C    + E   L   M     RP+V T + LINGLC + R+ +A +L+  M + G  
Sbjct: 147 NGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCE 206

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
            N++ +  +++  CK+G   +A D+        +M    +    + Y+I++D  CK+G+L
Sbjct: 207 ANEITYGPVLNRMCKSGNTALALDL------FRKMEERSIKASVVQYSIVIDSLCKDGNL 260

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + AL +  EM  +GI+ D VA++++I G C  G+  +  +MLREM+   + P+  T++ +
Sbjct: 261 DDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSAL 320

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID F K G       L  EM + G  P   TY++L++G CK  +L  AN +LD M+  G 
Sbjct: 321 IDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGC 380

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            P+ +TY+IL+  +CK    ++  +L    S KGLV+D   Y +LV 
Sbjct: 381 EPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQ 427



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 149/299 (49%), Gaps = 41/299 (13%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P+V  F+ L+    KEGK+ +A+ +++E   RG+    +++++LI+G CK  
Sbjct: 304 EMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKEN 363

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E  ++  +M   G  P++ TYS LIN  CK  R+D+   L  E+  +GL  + V + 
Sbjct: 364 RLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYN 423

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C++G++++A      +++  EM + G+ P  +TY ILLDG C  G+L+ AL+I 
Sbjct: 424 TLVQGFCQSGKLNVA------KELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIF 477

Query: 299 KEMIK-----------------------------------RGIELDNVAFTALISGFCRG 323
           ++M K                                   +G++ D + +  +I G C+ 
Sbjct: 478 EKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKK 537

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           G + EA+ + R+M + G  P D TY ++I          +   L++EM+  G      T
Sbjct: 538 GSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADAST 596



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 155/314 (49%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ +A  +F+   +     + + F+ L +   + K  D        M+ +G+  ++YT +
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +IN  C++ +L  A  ++    + G  PN + F+TLI+G C  GR+       EA  +V
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVS------EAVALV 162

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M      P+ +T   L++G C +G +  AL +   M+K G E + + +  +++  C+ 
Sbjct: 163 DRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKS 222

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G    A  + R+M +  +K     Y++VID  CK+G+      L  EM   G    V  Y
Sbjct: 223 GNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAY 282

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           ++++ GLC  G+  +   +L  M+   ++P+ +T++ L++   K G   +  +L +E   
Sbjct: 283 SSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVA 342

Query: 441 KGLVSDYACYTSLV 454
           +G+  D   Y+SL+
Sbjct: 343 RGIAPDTITYSSLI 356



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E++  G  PSV  + +L+  LC  G+++ A  +F++  K  +      +N +I+G C
Sbjct: 441 LFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMC 500

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            A  +D+ + L   +   G++PDV TY+ +I GLCK+  L +A++L  +M E G  P+D 
Sbjct: 501 NASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDC 560

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD----KITYTILLDG 284
            +  LI  H     +        + ++++EM   G   D    K+   +L DG
Sbjct: 561 TYNILIRAHLGGSGV------ISSVELIEEMKMRGFAADASTIKMVVVMLSDG 607


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 191/368 (51%), Gaps = 32/368 (8%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+ + G  P+V  +N L+  L K G  + AQ+ FDE   +GL    +++N+LING+CKA
Sbjct: 324 LEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKA 383

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            NL +   L   ++ +G+ P V TY+ LI+G C+   L+ A  L  EM E    P+   +
Sbjct: 384 GNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTY 443

Query: 238 TTLIDGHCK--------------------------NGRIDMA---GDMKEARKIVDEMCT 268
           T L++G C                           N RI      G +  A ++ +EM  
Sbjct: 444 TILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMML 503

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G++ D +TY +L+DG CK G L+ A  +  +M+  G+ LD V +T LI   C  G+++E
Sbjct: 504 RGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIE 563

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ +   M+  GL P   TYT+ I  +C+ G+    +   ++M  +G  P   TYN LM+
Sbjct: 564 AKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMH 623

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
            LC+ G+ ++A      ML+ G+VP+  TY +L++G CK GN     +L  E   KG+  
Sbjct: 624 ALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHP 683

Query: 446 DYACYTSL 453
           D+  + +L
Sbjct: 684 DHCTHNAL 691



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 174/361 (48%), Gaps = 12/361 (3%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C   + +  +  T  L  + E+  +G +P V   N ++  L    +  D + V+ +  + 
Sbjct: 164 CQAQKSVPASCSTQCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQL 223

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVME--GSGMRPDVYTYSALINGLCKENRLD 216
           G+  +  ++NTL++  CKA  +D+   L   ME   +G  P+  TY+ +INGL ++  L+
Sbjct: 224 GVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELE 283

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L+  M       +   +  LI G      ++ AG       ++ EM   G+ P  +
Sbjct: 284 KAAQLVDIM-RLSKKASAFTYNPLITGLLARDFVEKAG------ALLLEMENEGIVPTVV 336

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+DG  K G+ E+A     EM  +G+  D + + +LI+G+C+ G + +A  +  ++
Sbjct: 337 TYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDL 396

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + GL P   TY ++ID +C+ GD +   RL +EM  +  LP V TY  LMNG C    L
Sbjct: 397 KRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNL 456

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
               +  D ML  G+ PD   YN  +      G   +  +L+ E   +G+ SD   Y  L
Sbjct: 457 AMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVL 516

Query: 454 V 454
           +
Sbjct: 517 I 517



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G++ ++L+ G  P+   +NVLMH LC+ G+ + A   F E  +RGL     ++  LI+G 
Sbjct: 601 GWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGS 660

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           CK  N     RL   M   G+ PD  T++AL  G  + +  D  + L
Sbjct: 661 CKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGFGEGHMYDAVQYL 707



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+ G  P+ Y + +L+   CKEG    A  ++ E  ++G+H    + N L  G  +  
Sbjct: 640 EMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGFGEGH 699

Query: 179 NLDEGFRLKSVMEGS 193
             D    L++V+ G+
Sbjct: 700 MYDAVQYLENVVLGT 714


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 201/386 (52%), Gaps = 14/386 (3%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           L  LD  ++C+R        +        ID+             ++  +  G+ P++  
Sbjct: 154 LEILDSLVRCYREFGGSNLTV----FDIFIDKFRVLGFLNEASSVFIASISEGFFPTLIC 209

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            N LM  L K   +     V+    +  +     ++  +I  HCK  ++ +G  + S ME
Sbjct: 210 CNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME 269

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
               +P+++TY+A I GLC+   +D+A  +   M E+GL P+   +T L+DG CK  R  
Sbjct: 270 KE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKR-- 326

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                KEA+ I + M ++GLNP++ TYT L+DGF KEG++E AL I+ EMI RG++L+ V
Sbjct: 327 ----SKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV 382

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            + A+I G  + G++ +A  +  EML  GL+PD  TY ++ID + K+ D      LL EM
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           ++    P+  TY+ L++GLC    L+ AN +LD M+  GV P+   Y  L++ + +    
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502

Query: 432 E---DFDKLQSEKGLVSDYACYTSLV 454
           E   +  K+    G++ D  CY  L+
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLI 528



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 206/406 (50%), Gaps = 9/406 (2%)

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           TRG  L  +  +A++      G +  A+  F  +              LID  ++++   
Sbjct: 374 TRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMA 433

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                  E+     +PS + ++VL+  LC    ++ A  V D+  + G+      + TLI
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLI 493

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             + +    +    L  +M  +G+ PD++ Y+ LI GLC+  ++++A++LL +M E+G+ 
Sbjct: 494 KAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN   +   I+ + K+G I +A       +   +M ++G+ P+ + YTIL+ G C  G+ 
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVA------ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNT 607

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             AL   K M+++G+  D  A++A+I    + GK  EA  +  + LK G+ PD   Y  +
Sbjct: 608 VEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSL 667

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I  FCK GD +   +L  EM  +G  P +  YN L+NGLCK G++  A  L D + +  +
Sbjct: 668 ISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDL 727

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           VPD +TY+ +++G+CK GN  +  KL  E   KG+  D   Y  L+
Sbjct: 728 VPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILI 773



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 198/448 (44%), Gaps = 63/448 (14%)

Query: 33   IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
            + SK G    A  +   + + G     ++   L+  + D+G   +A+  F+ + +     
Sbjct: 565  LYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIP 624

Query: 93   PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
              R    +I  + +       +G +L+ L  G  P V+++N L+   CKEG I+ A  ++
Sbjct: 625  DIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684

Query: 153  DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
            DE    G++   V +NTLING CK   + +   L   +E   + PDV TYS +I+G CK 
Sbjct: 685  DEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKS 744

Query: 213  NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------- 253
              L +A  L  EM  +G++P+  I+  LIDG  K G ++ A                   
Sbjct: 745  GNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFN 804

Query: 254  ---------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA---------- 294
                     G + EAR++ D+M    L P+ +TYTIL+D + K   +E A          
Sbjct: 805  SLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR 864

Query: 295  -------------------------LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
                                     + + K+M  RGI  D +A+  + S +C+ GK +EA
Sbjct: 865  NIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEA 924

Query: 330  ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++L + L  G+K +D  +  +I   CK     T   LL EM  +    + +T N L+ G
Sbjct: 925  LKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLG 984

Query: 390  LCKHGQLKNANMLLDTMLDLGVVPDDIT 417
              K G    A+ +L  M  LG VP  ++
Sbjct: 985  FYKSGNEDEASKVLGVMQRLGWVPTSLS 1012



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 84/336 (25%)

Query: 176 KAKNLDEGFRLKSVMEGSGMR---PD-VYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +   +D+  RL++    S  +   P  +++YS L   LC    +  A+ +L ++ +    
Sbjct: 93  QKSEIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKP 152

Query: 232 P-----------------NDVIFTTLIDGH---------------------------CKN 247
           P                 N  +F   ID                             C N
Sbjct: 153 PLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 248 GRIDM--AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD--------------- 290
              D+  A  M    K+   M    + PD  TYT ++   CK GD               
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC 272

Query: 291 -------------------LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
                              ++ AL+++K M+++G+  D   +T L+ GFC+  +  EA+ 
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +   M   GL P+  TYT +ID F K G+ +   R+  EM + G    V TYNA++ G+ 
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           K G++  A  L + ML  G+ PD  TYN+L++G+ K
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLK 428



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 96/273 (35%), Gaps = 59/273 (21%)

Query: 6    TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKK-------------------GMGSSASLF 46
            +L A+++++     H    +AR+L   +V KK                    M  +  LF
Sbjct: 799  SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLF 858

Query: 47   ASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
               +ETR      L   +L++ Y  +G     I  F+        + ARG  C       
Sbjct: 859  LD-METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFK-------DMEARGIAC------- 903

Query: 107  TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
                        + + YG   S Y         CKEGK  +A  + ++    G+      
Sbjct: 904  ------------DAIAYGVMASAY---------CKEGKSLEALKLLNKSLVEGIKLEDDV 942

Query: 167  FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
            F+ LI   CK K +     L S M    +     T + L+ G  K    D+A  +L  M 
Sbjct: 943  FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQ 1002

Query: 227  ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
              G  P  +  T  I      GR DM  D+ + 
Sbjct: 1003 RLGWVPTSLSLTDSIS----TGRDDMKSDISQV 1031



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +++   M     +P V TY  ++   CK G +    M+L  M +    P+  TYN  + G
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGG 285

Query: 425 HCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            C+ G  ++     KL  EKGL  D   YT LV    K ++ +
Sbjct: 286 LCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 183/335 (54%), Gaps = 9/335 (2%)

Query: 124  GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
            G  P +  + V+++ LCK G    A  + ++  +  L    + +NT+I+G CK K++D+ 
Sbjct: 830  GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 889

Query: 184  FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
              L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M ER + P+   F+ LID 
Sbjct: 890  LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 949

Query: 244  HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
              K G+      + EA K+ DEM    ++P  +TY+ L++GFC    L+ A  + + M+ 
Sbjct: 950  FVKEGK------LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 1003

Query: 304  RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            +    D V +  LI GFC+  +V E   + REM + GL  +  TY ++I    + GD   
Sbjct: 1004 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 1063

Query: 364  GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
               + KEM SDG  P + TYN L++GLCK+G+L+ A ++ + +    + P   TYNI++E
Sbjct: 1064 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 1123

Query: 424  GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            G CK G  ED   L    S KG+  D   Y +++S
Sbjct: 1124 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMIS 1158



 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 188/348 (54%), Gaps = 9/348 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ L    ++L  GY P       L++  C+  ++ DA  + D+  + G     V++N +
Sbjct: 240 SLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAI 299

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+  CK K +++ F     +E  G+RP+V TY+AL+NGLC  +R  DA  LL +M ++ +
Sbjct: 300 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 359

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
           TPN + ++ L+D   KNG++       EA+++ +EM    ++PD +TY+ L++G C    
Sbjct: 360 TPNVITYSALLDAFVKNGKV------LEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 413

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A  +   M+ +G   D V++  LI+GFC+  +V +  ++ REM + GL  +  TY  
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I  F + GD         +M   G  P + TYN L+ GLC +G+L+ A ++ + M    
Sbjct: 474 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +  D +TY  ++ G CK G  E+   L    S KGL  D   YT+++S
Sbjct: 534 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 581



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 182/331 (54%), Gaps = 9/331 (2%)

Query: 127  PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            P V ++N ++  LCK   + DA  +F E   +G+    V++++LI+  C      +  RL
Sbjct: 868  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 927

Query: 187  KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             S M    + PDV+T+SALI+   KE +L +AE L  EM +R + P+ V +++LI+G C 
Sbjct: 928  LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 987

Query: 247  NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            + R+D      EA+++ + M +    PD +TY  L+ GFCK   +E  +++ +EM +RG+
Sbjct: 988  HDRLD------EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 1041

Query: 307  ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
              + V +  LI G  + G    A+ + +EM+  G+ P+  TY  ++D  CKNG  +    
Sbjct: 1042 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 1101

Query: 367  LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            + + ++     P + TYN ++ G+CK G++++   L   +   GV PD + YN ++ G C
Sbjct: 1102 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 1161

Query: 427  KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            + G+ E+ D L     E G + +  CY +L+
Sbjct: 1162 RKGSKEEADALFKEMKEDGTLPNSGCYNTLI 1192



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 175/330 (53%), Gaps = 6/330 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L++   R N  +  +    ++++ GY P +  +N ++  LCK  ++ DA   F E  ++G
Sbjct: 264 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 323

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++  L+NG C +    +  RL S M    + P+V TYSAL++   K  ++ +A+
Sbjct: 324 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 383

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM    + P+ V +++LI+G C + RID      EA ++ D M + G   D ++Y 
Sbjct: 384 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRID------EANQMFDLMVSKGCLADVVSYN 437

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++GFCK   +E  + + +EM +RG+  + V +  LI GF + G V +A+    +M   
Sbjct: 438 TLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF 497

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ PD  TY +++   C NG+ +    + ++M+       + TY  ++ G+CK G+++ A
Sbjct: 498 GISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEA 557

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             L  ++   G+ PD +TY  ++ G C  G
Sbjct: 558 WSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 587



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 203/386 (52%), Gaps = 13/386 (3%)

Query: 75   LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
            LDDA+  F  +++   F       + L+  + + N   V +    ++ + G   + Y ++
Sbjct: 676  LDDAVALFGEMVKSRPFPSIIEFSK-LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 734

Query: 134  VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            +L++  C+  ++  A  V  +  K G     V+ ++L+NG+C +K + E   L   M  +
Sbjct: 735  ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 194  GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
            G +P+  T++ LI+GL   N+  +A  L+  M  +G  P+ V +  +++G CK G  D+A
Sbjct: 795  GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 254  GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
             ++      +++M    L P  + Y  ++DG CK   ++ AL++ KEM  +GI  + V +
Sbjct: 855  FNL------LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908

Query: 314  TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            ++LIS  C  G+  +A R+L +M++  + PD  T++ +ID F K G      +L  EM  
Sbjct: 909  SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 968

Query: 374  DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
                P++ TY++L+NG C H +L  A  + + M+     PD +TYN L++G CK+   E+
Sbjct: 969  RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 1028

Query: 434  ----FDKLQSEKGLVSDYACYTSLVS 455
                F ++ S++GLV +   Y  L+ 
Sbjct: 1029 GMEVFREM-SQRGLVGNTVTYNILIQ 1053



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 181/348 (52%), Gaps = 13/348 (3%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++LG  +E+L  G    +Y FN++++  C   ++  A  +  +  K G     V+  +L
Sbjct: 207 VISLGKKMEVL--GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSL 264

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +NG C+   + +   L   M   G +PD+  Y+A+I+ LCK  R++DA     E+  +G+
Sbjct: 265 VNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI 324

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            PN V +T L++G C + R        +A +++ +M    + P+ ITY+ LLD F K G 
Sbjct: 325 RPNVVTYTALVNGLCNSSR------WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 378

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A ++ +EM++  I+ D V +++LI+G C   ++ EA +M   M+  G   D  +Y  
Sbjct: 379 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 438

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ FCK    + G +L +EM   G +    TYN L+ G  + G +  A      M   G
Sbjct: 439 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 498

Query: 411 VVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           + PD  TYNILL G C +G  E     F+ +Q ++ +  D   YT+++
Sbjct: 499 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQ-KREMDLDIVTYTTVI 545



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 168/315 (53%), Gaps = 9/315 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA  +F +  K     + V FN L++   K K  D    L   ME  G+R D+YT++
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +IN  C   ++  A  +L +M + G  P+ V   +L++G C+  R+       +A  +V
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRV------SDAVSLV 281

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D+M   G  PD + Y  ++D  CK   +  A D  KE+ ++GI  + V +TAL++G C  
Sbjct: 282 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNS 341

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            +  +A R+L +M+K  + P+  TY+ ++D F KNG       L +EM      P + TY
Sbjct: 342 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 401

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           ++L+NGLC H ++  AN + D M+  G + D ++YN L+ G CK    ED  KL    S+
Sbjct: 402 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 461

Query: 441 KGLVSDYACYTSLVS 455
           +GLVS+   Y +L+ 
Sbjct: 462 RGLVSNTVTYNTLIQ 476



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 201/432 (46%), Gaps = 26/432 (6%)

Query: 9    AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE----------------- 51
             ++T++H L  H   S+A  L+  +V+K G       +  ++                  
Sbjct: 802  TFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNK 860

Query: 52   -TRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
              +G   PG L+ + ++        +DDA+  F+ +     R        LI  +     
Sbjct: 861  MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 920

Query: 110  PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             +       ++++   +P V+ F+ L+    KEGK+ +A+ ++DE  KR +  + V++++
Sbjct: 921  WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 980

Query: 170  LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
            LING C    LDE  ++   M      PDV TY+ LI G CK  R+++   +  EM +RG
Sbjct: 981  LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 1040

Query: 230  LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
            L  N V +  LI G  + G  DMA      ++I  EM ++G+ P+ +TY  LLDG CK G
Sbjct: 1041 LVGNTVTYNILIQGLFQAGDCDMA------QEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 1094

Query: 290  DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             LE A+ + + + +  +E     +  +I G C+ GKV +   +   +   G+KPD   Y 
Sbjct: 1095 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 1154

Query: 350  MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
             +I  FC+ G  +    L KEM+ DG LP    YN L+    + G  + +  L+  M   
Sbjct: 1155 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 1214

Query: 410  GVVPDDITYNIL 421
            G   D  T  ++
Sbjct: 1215 GFAGDASTIGLV 1226



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 173/347 (49%), Gaps = 35/347 (10%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           ++DA   F+ + +   R        L++ +  ++  +       +++    +P+V  ++ 
Sbjct: 309 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 368

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+    K GK+ +A+ +F+E  +  +    V++++LING C    +DE  ++  +M   G
Sbjct: 369 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 428

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              DV +Y+ LING CK  R++D   L  EM +RGL  N V + TLI G  +      AG
Sbjct: 429 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ------AG 482

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+ +A++   +M   G++PD  TY ILL G C  G+LE AL I ++M KR ++LD V +T
Sbjct: 483 DVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 542

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI---------------------- 352
            +I G C+ GKV EA  +   +   GLKPD  TYT ++                      
Sbjct: 543 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 602

Query: 353 -----DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
                DC   +GD      L+K+M S G+ P++     + +G+CK  
Sbjct: 603 GLMKNDCTLSDGDITLSAELIKKMLSCGYAPSL--LKDIKSGVCKKA 647



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 207/472 (43%), Gaps = 67/472 (14%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            YS++++ L  H    +A  +  L+VSK  +    S                  + L+  
Sbjct: 400 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSY-----------------NTLING 442

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           +     ++D ++ FR + +            LI    +         F+ ++  +G SP 
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           ++ +N+L+  LC  G+++ A ++F++  KR +    V++ T+I G CK   ++E + L  
Sbjct: 503 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 562

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT--------- 239
            +   G++PD+ TY+ +++GLC +  L + E L  +M + GL  ND   +          
Sbjct: 563 SLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAEL 622

Query: 240 ----------------LIDGHCK-----------------------NGRIDMAGDMKEAR 260
                           +  G CK                       NG  ++  D  +A 
Sbjct: 623 IKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLD--DAV 680

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            +  EM  +   P  I ++ LL    K    +  + + ++M   GI  ++  ++ LI+ F
Sbjct: 681 ALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCF 740

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           CR  ++  A  +L +M+K+G +P+  T + +++ +C +        L+ +M   G+ P  
Sbjct: 741 CRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNT 800

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            T+N L++GL  H +   A  L+D M+  G  PD +TY +++ G CK G+ +
Sbjct: 801 VTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 852


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 215/430 (50%), Gaps = 12/430 (2%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLH---LIVSKKGMGSSAS--LFASILE-TRGTHLPG 59
           TLH Y  +VH L   ++ S A +LL     +V  +G+    +  ++ +++E T   +   
Sbjct: 119 TLHNYCVIVHILAWSRVFSHAMNLLSELIQLVEVEGVCVPPNDGIYENLVECTEDCNWNP 178

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
            + D L+  YV  G ++  +  FR   +  F      C CL+  + R N        Y E
Sbjct: 179 AIFDMLIKAYVKAGMVEKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVYEE 238

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G   + Y FN++ H LCK+G         D+  + G     V++NTL+N +CK + 
Sbjct: 239 MGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRR 298

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L++ F L  +M   G+ P++ T++ L+NGLC+E ++ +A  L H+M  RG+ P+ V + T
Sbjct: 299 LEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNT 358

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+ G+C+ G++ M       R ++ EM  NG+ PD +T  ++++GF ++G L SAL+   
Sbjct: 359 LVSGYCREGKMQM------CRSLLHEMIGNGICPDSVTCRLIVEGFARDGKLLSALNTVV 412

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           E+ +  I++    +  LI   C  G+   A   L  + + G  P   TY  +++  CK  
Sbjct: 413 ELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFN 472

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           + +    L  EM     +  +  Y A+++ LC+  +   A  LL+ M+  G++PD     
Sbjct: 473 NVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMVSSGILPDVEISR 532

Query: 420 ILLEGHCKHG 429
            L+ G+C+  
Sbjct: 533 ALINGYCEEN 542



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 33/271 (12%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCER------GLTPNDVIFTTLIDGHCKN 247
            + P ++ Y  +++ L        A  LL E+ +        + PND I+  L++     
Sbjct: 115 NITPTLHNYCVIVHILAWSRVFSHAMNLLSELIQLVEVEGVCVPPNDGIYENLVE----- 169

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                              CT   N +   + +L+  + K G +E  L   +  I+    
Sbjct: 170 -------------------CTEDCNWNPAIFDMLIKAYVKAGMVEKGLATFRRNIEACFI 210

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + +A   L+SG  R   + +   +  EM ++G+  +  T+ ++    CK+GDT    R 
Sbjct: 211 PNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRF 270

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L +M  +G  P + TYN L+N  CK  +L++A  L   M   GV+P+ IT+ +L+ G C+
Sbjct: 271 LDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCE 330

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            G  ++  +L  +   +G+  D   Y +LVS
Sbjct: 331 EGKVKEAHQLFHQMVHRGIDPDVVSYNTLVS 361



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 6/224 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           CR +++   R       L   +E+  +       +++ L+  LC EG+   A+       
Sbjct: 391 CRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRIS 450

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G      ++N L+   CK  N++E   LKS M    M  ++  Y A+I+ LC+ NR  
Sbjct: 451 QDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTL 510

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +AE LL EM   G+ P+  I   LI+G+C+  ++D A  +   +   +E        D  
Sbjct: 511 EAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSL--LKFFANEFQVY----DTE 564

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           +Y  ++  FC  G++   L+++ +++K G   + +    +I G 
Sbjct: 565 SYNAVVKVFCDVGNVAELLELQDKLLKVGYVSNRLTCKYVIHGL 608



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 12/230 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L  A+     L++   +IP      LI  +     P     F L I   GY P +  +
Sbjct: 402 GKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRISQDGYMPKINTY 461

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L+  LCK   +++A ++  E  KR +    V++  +I+  C+     E   L   M  
Sbjct: 462 NKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMVS 521

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           SG+ PDV    ALING C+EN++D A  LL          +   +  ++   C       
Sbjct: 522 SGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVYDTESYNAVVKVFCD------ 575

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
            G++ E  ++ D++   G   +++T   ++ G      L+ A++   EM+
Sbjct: 576 VGNVAELLELQDKLLKVGYVSNRLTCKYVIHG------LQKAMEQDDEML 619


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 192/404 (47%), Gaps = 8/404 (1%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           P  V D L+   V +G    AI  F  L              LI+        +      
Sbjct: 54  PIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLL 113

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             IL  G+ P++  FN L++  C  G +  A     +   +G      S+ +LING CK 
Sbjct: 114 GTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKN 173

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
               +  +L   ME   +RP++ TYS +I+GLCK+  + DA  L   +  RG+  + V +
Sbjct: 174 GQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAY 233

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            +LI G C        G  +EA +++  M    +NPD  T+ IL+D  CKEG +  A  +
Sbjct: 234 NSLIHGCCS------VGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGV 287

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              M+KRG + D V + AL+ GFC    V EA  +   M+K GL+PD   Y ++I+ +CK
Sbjct: 288 FAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCK 347

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                    L KE+R    +P + TYN+L++GLCK G++     L+D M D G  PD +T
Sbjct: 348 IDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVT 407

Query: 418 YNILLEGHCKHGNPEDFDKL--QSEKGLVSDYACYTSLVSKSSK 459
           YNI L+  CK    E    L  Q  +G+  D+  Y  +V    K
Sbjct: 408 YNIFLDAFCKSKPYEKAISLFRQIVQGIWPDFYMYDVIVENFCK 451



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 7/290 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P  Y FN+L+  LCKEG+I +AQ VF    KRG     V++N L+ G C + N+ E   
Sbjct: 262 NPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARE 321

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M   G+ PDV  Y+ LING CK + +D+A +L  E+  + L PN   + +LIDG C
Sbjct: 322 LFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLC 381

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GR      M   +++VDEMC  G +PD +TY I LD FCK    E A+ + +++++ G
Sbjct: 382 KLGR------MSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-G 434

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D   +  ++  FC+G K+  AE  L+ +L  G  P+  TYT++I+  CK+       
Sbjct: 435 IWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAM 494

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            LL +M  +   P   T+  ++  L +  +   A  L   M++ G+V D+
Sbjct: 495 TLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVNDE 544



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 172/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P ++VF+ L+  + + G    A  +F +   +G+  +  +   LIN +C   +L   F L
Sbjct: 53  PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +   G +P++ T++ LING C    +  A     ++  +G   ++  + +LI+G CK
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCK 172

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NG+       ++A +++ +M  + + P+ ITY+ ++DG CK+  +  AL +   +  RGI
Sbjct: 173 NGQT------RDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGI 226

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            +D VA+ +LI G C  G+  EA R+L  M++  + PDD T+ +++D  CK G       
Sbjct: 227 LVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQG 286

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M   G  P + TYNALM G C    +  A  L + M+  G+ PD + YN+L+ G+C
Sbjct: 287 VFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYC 346

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K    ++   L  E   K LV + A Y SL+
Sbjct: 347 KIDMVDEAMVLFKEIRCKNLVPNLATYNSLI 377



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 193/399 (48%), Gaps = 8/399 (2%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL  IV      ++ SLF+  L ++G       L  L+  Y     L  A      + K 
Sbjct: 61  LLGAIVRMGHYPTAISLFSQ-LHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKM 119

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
            F+        LI+      + +  + F L+++  GY    + +  L++ LCK G+ +DA
Sbjct: 120 GFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDA 179

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +  +  +  +    ++++T+I+G CK + + +  RL S++   G+  DV  Y++LI+G
Sbjct: 180 LQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHG 239

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            C   +  +A  LL  M    + P+D  F  L+D  CK GRI       EA+ +   M  
Sbjct: 240 CCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRI------VEAQGVFAVMMK 293

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G  PD +TY  L++GFC   ++  A ++   M+KRG+E D + +  LI+G+C+   V E
Sbjct: 294 RGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDE 353

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  + +E+    L P+ ATY  +ID  CK G       L+ EM   G  P + TYN  ++
Sbjct: 354 AMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLD 413

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             CK    + A  L   ++  G+ PD   Y++++E  CK
Sbjct: 414 AFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCK 451



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 192/415 (46%), Gaps = 10/415 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
            GM S A  F   L  +G  L      +L+      G   DA+Q  + + +   R     
Sbjct: 138 NGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLIT 197

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID + +  L    L  +  +   G    V  +N L+H  C  G+ ++A  +     
Sbjct: 198 YSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMV 257

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +  ++    +FN L++  CK   + E   + +VM   G +PD+ TY+AL+ G C  N + 
Sbjct: 258 RGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVS 317

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A  L + M +RGL P+ + +  LI+G+CK   IDM   + EA  +  E+    L P+  
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLINGYCK---IDM---VDEAMVLFKEIRCKNLVPNLA 371

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+DG CK G +    ++  EM  RG   D V +   +  FC+     +A  + R++
Sbjct: 372 TYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI 431

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           ++ G+ PD   Y ++++ FCK    K     L+ +   G  P V TY  ++N LCK    
Sbjct: 432 VQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSF 490

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYA 448
             A  LL  M D    PD +T+  ++    +    +  +KL+    E+GLV+D A
Sbjct: 491 DEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVNDEA 545



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML+    P    +  ++    + G   T   L  ++ S G  P++ T   L+N  C    
Sbjct: 46  MLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAH 105

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
           L  A  LL T+L +G  P+ +T+N L+ G C +G        + +   KG   D   Y S
Sbjct: 106 LSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGS 165

Query: 453 LVSKSSKYRQKR 464
           L++   K  Q R
Sbjct: 166 LINGLCKNGQTR 177


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 231/451 (51%), Gaps = 30/451 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            +ST+V+        S+A  L+  +V  K      ++   I    G  L G V +AL+++
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLI---NGLCLKGRVSEALVLI 198

Query: 69  --YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
              V+ GF  D +    +L                +R+ ++    + L  + ++ +    
Sbjct: 199 DRMVEYGFQPDEVTYGPVL----------------NRLCKSGNSALALDLFRKMEERNIK 242

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            SV  +++++  LCK+G   DA  +F+E   +G+ A  V++++LI G C     D+G ++
Sbjct: 243 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 302

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M G  + PDV T+SALI+   KE +L +A+ L +EM  RG+ P+ + + +LIDG CK
Sbjct: 303 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 362

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                    + EA ++ D M + G  PD +TY+IL++ +CK   ++  + + +E+  +G+
Sbjct: 363 ENC------LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + + +  L+ GFC+ GK+  A+ + +EM+  G+ P   TY +++D  C NG+      
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + ++M+       +  YN +++G+C   ++ +A  L  ++ D GV PD +TYN+++ G C
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           K G+  + D L     E G   D   Y  L+
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 194/384 (50%), Gaps = 11/384 (2%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           ++DAI  F  +++      P    R L   + RT    + LGF   +   G    +Y   
Sbjct: 51  VNDAIDLFESMIQSRPLPTPIDFNR-LCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           ++++  C++ K+  A  V     K G     ++F+TL+NG C    + E   L   M   
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
             RPD+ T S LINGLC + R+ +A +L+  M E G  P++V +  +++  CK+G   +A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            D+        +M    +    + Y+I++D  CK+G  + AL +  EM  +GI+ D V +
Sbjct: 230 LDL------FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTY 283

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           ++LI G C  GK  +  +MLREM+   + PD  T++ +ID F K G       L  EM +
Sbjct: 284 SSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   TYN+L++G CK   L  AN + D M+  G  PD +TY+IL+  +CK    +D
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDD 403

Query: 434 FDKL---QSEKGLVSDYACYTSLV 454
             +L    S KGL+ +   Y +LV
Sbjct: 404 GMRLFREISSKGLIPNTITYNTLV 427



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 161/305 (52%), Gaps = 6/305 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P V  F+ L+    KEGK+ +A+ +++E   RG+    +++N+LI+G CK  
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E  ++  +M   G  PD+ TYS LIN  CK  R+DD   L  E+  +GL PN + + 
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C++G+++       A+++  EM + G+ P  +TY ILLDG C  G+L  AL+I 
Sbjct: 425 TLVLGFCQSGKLN------AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M K  + L    +  +I G C   KV +A  +   +   G+KPD  TY ++I   CK 
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       L ++M+ DG  P   TYN L+        L ++  L++ M   G   D  T 
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTI 598

Query: 419 NILLE 423
            ++++
Sbjct: 599 KMVID 603



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 44/314 (14%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA  +F+   +     T + FN L +   + K  D        ME +G+  D+YT +
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +IN  C++ +L  A                  F+ L       GR         A K+ 
Sbjct: 110 IMINCYCRKKKLLFA------------------FSVL-------GR---------AWKL- 134

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
                 G  PD IT++ L++GFC EG +  A+ +   M++     D V  + LI+G C  
Sbjct: 135 ------GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK 188

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+V EA  ++  M++ G +PD+ TY  V++  CK+G++     L ++M       +V  Y
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           + +++ LCK G   +A  L + M   G+  D +TY+ L+ G C  G  +D  K+  E   
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308

Query: 441 KGLVSDYACYTSLV 454
           + ++ D   +++L+
Sbjct: 309 RNIIPDVVTFSALI 322



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 31/239 (12%)

Query: 58  PGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P +V  +++I  Y     +DD ++ FR        I ++G   LI   +  N  T+ LGF
Sbjct: 383 PDIVTYSILINSYCKAKRVDDGMRLFR-------EISSKG---LIPNTITYN--TLVLGF 430

Query: 117 ------------YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
                       + E++  G  PSV  + +L+  LC  G++  A  +F++  K  +    
Sbjct: 431 CQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGI 490

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
             +N +I+G C A  +D+ + L   +   G++PDV TY+ +I GLCK+  L +A++L  +
Sbjct: 491 GIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 550

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           M E G TP+D  +  LI  H           +  + ++++EM   G + D  T  +++D
Sbjct: 551 MKEDGCTPDDFTYNILIRAHLG------GSGLISSVELIEEMKVCGFSADSSTIKMVID 603



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 18/212 (8%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T+V         + A++L   +VS+ G+  S   +            G++LD L   
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVVTY------------GILLDGL--- 465

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
             D G L+ A++ F  ++K    +       +I  M   +        +  + D G  P 
Sbjct: 466 -CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +NV++  LCK+G + +A M+F +  + G      ++N LI  H     L     L  
Sbjct: 525 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIE 584

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
            M+  G   D  T   +I+ L  + RLD + L
Sbjct: 585 EMKVCGFSADSSTIKMVIDML-SDRRLDKSFL 615


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 231/451 (51%), Gaps = 30/451 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            +ST+V+        S+A  L+  +V  K      ++   I    G  L G V +AL+++
Sbjct: 171 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLI---NGLCLKGRVSEALVLI 227

Query: 69  --YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
              V+ GF  D +    +L                +R+ ++    + L  + ++ +    
Sbjct: 228 DRMVEYGFQPDEVTYGPVL----------------NRLCKSGNSALALDLFRKMEERNIK 271

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            SV  +++++  LCK+G   DA  +F+E   +G+ A  V++++LI G C     D+G ++
Sbjct: 272 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 331

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M G  + PDV T+SALI+   KE +L +A+ L +EM  RG+ P+ + + +LIDG CK
Sbjct: 332 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 391

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                    + EA ++ D M + G  PD +TY+IL++ +CK   ++  + + +E+  +G+
Sbjct: 392 ENC------LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 445

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + + +  L+ GFC+ GK+  A+ + +EM+  G+ P   TY +++D  C NG+      
Sbjct: 446 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 505

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + ++M+       +  YN +++G+C   ++ +A  L  ++ D GV PD +TYN+++ G C
Sbjct: 506 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 565

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           K G+  + D L     E G   D   Y  L+
Sbjct: 566 KKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 225/453 (49%), Gaps = 23/453 (5%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T+H+   M+  L+   ++ +A +   ++      G+S   ++SI E + ++      + L
Sbjct: 23  TIHSLKKMIQRLIP--LNRKASNFTQILEK----GTSLLHYSSITEAKLSYK-----ERL 71

Query: 66  MIVYVDLGFLDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
               VD+  ++DAI  F  +++      P    R L   + RT    + LGF   +   G
Sbjct: 72  RNGIVDIK-VNDAIDLFESMIQSRPLPTPIDFNR-LCSAVARTKQYDLVLGFCKGMELNG 129

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
               +Y   ++++  C++ K+  A  V     K G     ++F+TL+NG C    + E  
Sbjct: 130 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAV 189

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M     RPD+ T S LINGLC + R+ +A +L+  M E G  P++V +  +++  
Sbjct: 190 ALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRL 249

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK+G   +A D+        +M    +    + Y+I++D  CK+G  + AL +  EM  +
Sbjct: 250 CKSGNSALALDL------FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 303

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           GI+ D V +++LI G C  GK  +  +MLREM+   + PD  T++ +ID F K G     
Sbjct: 304 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 363

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L  EM + G  P   TYN+L++G CK   L  AN + D M+  G  PD +TY+IL+  
Sbjct: 364 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 423

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +CK    +D  +L    S KGL+ +   Y +LV
Sbjct: 424 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 161/305 (52%), Gaps = 6/305 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P V  F+ L+    KEGK+ +A+ +++E   RG+    +++N+LI+G CK  
Sbjct: 334 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 393

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E  ++  +M   G  PD+ TYS LIN  CK  R+DD   L  E+  +GL PN + + 
Sbjct: 394 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 453

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C++G+++       A+++  EM + G+ P  +TY ILLDG C  G+L  AL+I 
Sbjct: 454 TLVLGFCQSGKLN------AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 507

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M K  + L    +  +I G C   KV +A  +   +   G+KPD  TY ++I   CK 
Sbjct: 508 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 567

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       L ++M+ DG  P   TYN L+        L ++  L++ M   G   D  T 
Sbjct: 568 GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTI 627

Query: 419 NILLE 423
            ++++
Sbjct: 628 KMVID 632



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 31/239 (12%)

Query: 58  PGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P +V  +++I  Y     +DD ++ FR        I ++G   LI   +  N  T+ LGF
Sbjct: 412 PDIVTYSILINSYCKAKRVDDGMRLFR-------EISSKG---LIPNTITYN--TLVLGF 459

Query: 117 ------------YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
                       + E++  G  PSV  + +L+  LC  G++  A  +F++  K  +    
Sbjct: 460 CQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGI 519

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
             +N +I+G C A  +D+ + L   +   G++PDV TY+ +I GLCK+  L +A++L  +
Sbjct: 520 GIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 579

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           M E G TP+D  +  LI  H           +  + ++++EM   G + D  T  +++D
Sbjct: 580 MKEDGCTPDDFTYNILIRAHLG------GSGLISSVELIEEMKVCGFSADSSTIKMVID 632



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 18/212 (8%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T+V         + A++L   +VS+ G+  S   +            G++LD L   
Sbjct: 451 TYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVVTY------------GILLDGL--- 494

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
             D G L+ A++ F  ++K    +       +I  M   +        +  + D G  P 
Sbjct: 495 -CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 553

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +NV++  LCK+G + +A M+F +  + G      ++N LI  H     L     L  
Sbjct: 554 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIE 613

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
            M+  G   D  T   +I+ L  + RLD + L
Sbjct: 614 EMKVCGFSADSSTIKMVIDML-SDRRLDKSFL 644


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 242/505 (47%), Gaps = 50/505 (9%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLH-LIVSKKGMGSSASLFASILET-RGTHLPG 59
           +FR  ++++  +VH L   +M+ + R  L+ L+   K   SS  ++  ++          
Sbjct: 89  NFRPNVNSHCKLVHILSRARMYDETRSYLNELVTPSKNNYSSLVVWNELVRVFEDFKFSP 148

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
            V D ++ +Y + G + +A+  F  + K       R C  L+  ++R    +  +  Y  
Sbjct: 149 TVFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDH 208

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKI---------------------------------- 145
           I   G  P V+  +++++  CK+G +                                  
Sbjct: 209 INRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGD 268

Query: 146 -KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYS 203
            + A+MV    G+RG+    V+   LI G+C+   L+E  ++   ME S GM  D Y Y 
Sbjct: 269 MERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYG 328

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+G C+  ++DDA  L  EM   GL  N  I   LI+G+CKNG++       EA +++
Sbjct: 329 VLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVS------EAERLL 382

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
             M    L P+  +Y+ L+DGFC+EG +  A+ +  EM++ GI+ + V   +L+ G CR 
Sbjct: 383 MRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRV 442

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G   +A  +   MLK G+ PD+ +Y  ++D   K G+      L  ++ + G+  +   +
Sbjct: 443 GAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAF 502

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SE 440
           N ++NG CK  ++  A    + M +LG  PD +TY  L++G+CK GN E+  K++    +
Sbjct: 503 NTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEK 562

Query: 441 KGLVSDYACYTSLVS---KSSKYRQ 462
           + ++     Y SL+    KS K R+
Sbjct: 563 EAILPSIELYNSLIGGLFKSKKTRE 587



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 207/422 (49%), Gaps = 46/422 (10%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRC-LIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           +G  +DA+  + L+ K     P     C L+D + +       L  + +IL  GY  S Y
Sbjct: 442 VGAFEDALHVWHLMLKRGV-TPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTY 500

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            FN +++  CK  K+ +A+  F+   + G     V++ TLI+G+CK  N++E F++K  M
Sbjct: 501 AFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKM 560

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E   + P +  Y++LI GL K  +  +   LL EMC +GL+PN V + TLI G C  GR+
Sbjct: 561 EKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRL 620

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD- 309
           D      +A     +M   G  P+ I  + ++    + G ++ A  + ++M+   + LD 
Sbjct: 621 D------KAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDH 674

Query: 310 ----------------------------------NVAFTALISGFCRGGKVVEAERMLRE 335
                                             +V +   I+G C+ GKV +A+++   
Sbjct: 675 GYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSS 734

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +L  G  PD+ TY  +I  +   G+    F L  EM   G  P + TYNAL+NGLCK G 
Sbjct: 735 LLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGN 794

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTS 452
           L  A  L D +   G+ P+ I+YNIL++G+CK+GN  +   L++   ++G+      Y++
Sbjct: 795 LDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSA 854

Query: 453 LV 454
           L+
Sbjct: 855 LI 856



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 167/378 (44%), Gaps = 70/378 (18%)

Query: 85  LRKHYFRIPARGCRC----LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140
           LRK Y   P    +     LIDR+ R     + LG Y  + D  +  S Y+ + ++ KL 
Sbjct: 16  LRKSYHWKPRHESKLTRPELIDRISRL----LVLGRYHALKDLNFQFSDYILDSVLLKL- 70

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
                                     FN + + H         F+L S  + S  RP+V 
Sbjct: 71  -------------------------KFNPIASLHF--------FKLAS--KQSNFRPNVN 95

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           ++  L++ L +    D+    L+E+    +TP+   +++L+     N  + +  D K + 
Sbjct: 96  SHCKLVHILSRARMYDETRSYLNEL----VTPSKNNYSSLV---VWNELVRVFEDFKFSP 148

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            + D               ++L  +C++G +++AL +   M K G      +   L+S  
Sbjct: 149 TVFD---------------MILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSL 193

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
            R G+   A  +   + ++G+ PD  T +++++ +CK+G        +KEM   G    V
Sbjct: 194 VRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNV 253

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            TYN+L++G    G ++ A M+L  M + G++ + +T  +L++G+C+    E+ +K+  E
Sbjct: 254 VTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLRE 313

Query: 441 ----KGLVSDYACYTSLV 454
               +G+V D   Y  L+
Sbjct: 314 MERSEGMVLDEYAYGVLI 331


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 198/423 (46%), Gaps = 29/423 (6%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K    S ASL    +   G     +  + L+  +  LG +D+A+  F  + ++       
Sbjct: 248 KSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVF 307

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LID   +   P        E++ YG  P+   +N LM  L K GK  DA  +    
Sbjct: 308 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 367

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            +R    +  +FN +I+  CK   LD  + L  +M   G  PD+YTY+ +I+G C+ NR+
Sbjct: 368 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 427

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE----------------- 258
           DDA  LL  M E G  P+ V + +++ G CK  ++D A ++ E                 
Sbjct: 428 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 487

Query: 259 ------------ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                       A K++ EM  NG  PD + YTIL+ GFCK   L+ +L    EM+ +G 
Sbjct: 488 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGC 547

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               + ++ +I   C+  +V +   +L+ ML+ G+ PD   YT VID  CK+      + 
Sbjct: 548 VPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYE 607

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L K M+  G  P V TYN L++ LCK  +L  A  LL+ M   G +PD +TYN + +G  
Sbjct: 608 LYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFW 667

Query: 427 KHG 429
           K  
Sbjct: 668 KSA 670



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 161/302 (53%), Gaps = 7/302 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP    ++ L++  CK    + A  + DE  KRG+      +NT+I G C    +D    
Sbjct: 164 SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALV 223

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M+     P V TY+ L++ LCK  R+ DA L+L +M E G  PN V + TLI+G C
Sbjct: 224 HYRDMQ-RNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC 282

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K       G+M EA  + ++M  N  +PD  TY IL+DG+CK+   +    + +EM+K G
Sbjct: 283 K------LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG 336

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            E + + +  L+    + GK ++A  + + ML+   KP   T+ ++ID FCK G     +
Sbjct: 337 CEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAY 396

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L + M   G LP + TYN +++G C+  ++ +A  LL+ M + G  PD +TYN ++ G 
Sbjct: 397 ELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 456

Query: 426 CK 427
           CK
Sbjct: 457 CK 458



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L+   SP V+ +N+L+   CK+ + +D   +  E  K G     +++NTL++   K+ 
Sbjct: 296 QMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 355

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              + F L  +M     +P  +T++ +I+  CK  +LD A  L   M +RG  P+   + 
Sbjct: 356 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 415

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I G C+  RID      +AR++++ M   G  PD +TY  ++ G CK   ++ A ++ 
Sbjct: 416 IMISGACRANRID------DARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 469

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + +   G  LD V  + LI G C+  ++ +AE++LREM + G  PD   YT++I  FCK 
Sbjct: 470 EVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKA 529

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                      EM   G +P V TY+ +++ LCK  ++++  MLL TML+ GV PD I Y
Sbjct: 530 DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVY 589

Query: 419 NILLEGHCK---HGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
             +++G CK   +    +  KL  + G       Y  LV K  K
Sbjct: 590 TSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 155/301 (51%), Gaps = 6/301 (1%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P +Y +N+++   C+  +I DA+ + +   + G     V++N++++G CKA  +D
Sbjct: 404 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 463

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E + +  V+   G   DV T S LI+GLCK  RLDDAE LL EM   G  P+ V +T LI
Sbjct: 464 EAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILI 523

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G CK  ++D      ++     EM   G  P  ITY+I++D  CK   +     + K M
Sbjct: 524 HGFCKADQLD------KSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM 577

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++RG+  D + +T++I G C+     EA  + + M + G  P   TY +++D  CK    
Sbjct: 578 LERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRL 637

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                LL+ M SDG LP   TYN++ +G  K  +   A  L   M   G  P    Y++L
Sbjct: 638 DEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLL 697

Query: 422 L 422
           L
Sbjct: 698 L 698



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 178/342 (52%), Gaps = 10/342 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY  S +  N L+    ++ K ++A  +F           +++++TLING CKA++  + 
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           +RL   ME  G+ P    Y+ +I GLC   R+D A +   +M +R   P+ + +T L+D 
Sbjct: 187 YRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRNCAPSVITYTILVDA 245

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ RI       +A  I+++M   G  P+ +TY  L++GFCK G+++ A+ +  +M++
Sbjct: 246 LCKSARI------SDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE 299

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                D   +  LI G+C+  +  +  ++L+EM+K G +P+  TY  ++D   K+G    
Sbjct: 300 NSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID 359

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            F L + M      P+  T+N +++  CK GQL  A  L   M D G +PD  TYNI++ 
Sbjct: 360 AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS 419

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
           G C+    +D  +L    +E G   D   Y S+VS   K  Q
Sbjct: 420 GACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 461



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+V  +NVL+ KLCK  ++ +A  + +     G     V++N++ +G  K+   D+ 
Sbjct: 616 GCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKA 675

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           FRL   M+  G  P  + YS L+  L  E ++D A  +  E  E G   +  I  TL
Sbjct: 676 FRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 181/317 (57%), Gaps = 6/317 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P V+ +  +++ LCK G+   A  +F + G+ G     V+++T+I+  CK + ++E 
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + S M+  G+ P+++TY++LI GLC  +R  +A  +L+EM    + PN V F+ LI+ 
Sbjct: 65  LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 124

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G +       EAR ++  M   G+ P+ +TY+ L++G+  + ++  A  +   MI 
Sbjct: 125 FCKEGNVF------EARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMIT 178

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G + D  ++  LI+G+C+  ++ EA+++  EM+  GL PD  +Y  +ID  C+ G  + 
Sbjct: 179 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 238

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L K M ++G+LP + TY+ L++G CK G L  A  L   M    + P+ + YNIL++
Sbjct: 239 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILID 298

Query: 424 GHCKHGNPEDFDKLQSE 440
             CK  N ++  KL SE
Sbjct: 299 AMCKSRNLKEARKLFSE 315



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 156/272 (57%), Gaps = 6/272 (2%)

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           RG      ++ T+ING CK         L   M  +G +PDV TYS +I+ LCK+ R+++
Sbjct: 4   RGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 63

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +   M  +G++PN   + +LI G C   R       +EA  +++EM +  + P+ +T
Sbjct: 64  ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSR------WREASAMLNEMMSLNIMPNIVT 117

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +++L++ FCKEG++  A  + K M + G+E + V +++L++G+    +V EA ++   M+
Sbjct: 118 FSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMI 177

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G KPD  +Y ++I+ +CK        +L  EM   G  P + +YN L++GLC+ G+L+
Sbjct: 178 TKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLR 237

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            A+ L   ML  G +PD  TY+ILL+G CK G
Sbjct: 238 EAHDLFKNMLTNGNLPDLCTYSILLDGFCKQG 269



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 38/227 (16%)

Query: 266 MCTNGLNPDKITYTILLDGFCKEGD----------------------------------- 290
           M   G  PD  TYT +++G CK G+                                   
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  ALDI   M  +GI  +   + +LI G C   +  EA  ML EM+ + + P+  T+++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ FCK G+      +LK M   G  P V TY++LMNG     ++  A  L D M+  G
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             PD  +YNIL+ G+CK     +  +L +E   +GL  D   Y +L+
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 227



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +L  G  P +  +++L+   CK+G +  A  +F       L    V +N LI+  CK
Sbjct: 243 FKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCK 302

Query: 177 AKNLDEGFRLKSVMEGSGMRPDV 199
           ++NL E  +L S +   G++P++
Sbjct: 303 SRNLKEARKLFSELFVQGLQPNM 325


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 230/481 (47%), Gaps = 35/481 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH----LP 58
           F  +L  +ST++H L      S+A    H I     +  +  +     E R       L 
Sbjct: 142 FHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLD 201

Query: 59  GLVLDALMIVYVDLGF-------LDDAIQCFRLLRK--HYFRIPARGC--RCLIDRMMRT 107
            +V D L    +  G        + D +    LLRK     RI         +ID + + 
Sbjct: 202 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKD 261

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
              T     + E+ + G SP+++ +N +++  C  G+  +AQ +  E  +R +    V+F
Sbjct: 262 GRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTF 321

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + LIN   K     E   L + M   G+ P+  TY+++I+G  K+NRLD AE + + M  
Sbjct: 322 SVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMAT 381

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           +G +P+ + F+ LIDG+C   R+D      +  K++ EM   GL  + ITYT L+ GFC+
Sbjct: 382 KGCSPDVITFSILIDGYCGAKRVD------DGMKLLHEMSRRGLVANTITYTTLIHGFCQ 435

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL------ 341
            G+L +ALD+ +EMI  G+  + V    L+ G C  GK+ +A  M + M K  +      
Sbjct: 436 LGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASH 495

Query: 342 -----KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
                +PD  TY ++I      G       L +EM   G +P   TYN++++GLCK  +L
Sbjct: 496 PFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRL 555

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A  + D+M   G  PD +T+  L+ G+CK G   D  ++  E   +G+V++   Y +L
Sbjct: 556 DEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTL 615

Query: 454 V 454
           +
Sbjct: 616 I 616



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 171/323 (52%), Gaps = 17/323 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ +   SP V  F+VL++ L KEGK  +A+ +++E   RG+    +++N++I+G  K  
Sbjct: 308 EMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQN 367

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD   R+  +M   G  PDV T+S LI+G C   R+DD   LLHEM  RGL  N + +T
Sbjct: 368 RLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYT 427

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C+ G ++ A D+      + EM ++G+ P+ +T   LLDG C  G L+ AL++ 
Sbjct: 428 TLIHGFCQLGNLNAALDL------LQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMF 481

Query: 299 KEMIKRGIELDNV-----------AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           K M K  ++LD              +  LI G    GK  EAE +  EM   GL PD  T
Sbjct: 482 KVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTIT 541

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  VID  CK        ++   M S G  P V T+  L+NG CK G++ +   +   M 
Sbjct: 542 YNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMG 601

Query: 408 DLGVVPDDITYNILLEGHCKHGN 430
             G+V + ITY  L+ G C+ GN
Sbjct: 602 RRGIVANAITYRTLIHGFCQVGN 624



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 200/389 (51%), Gaps = 24/389 (6%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLID------RMMRTNLPTVTLGFYLEILDYGYSPS 128
           LDDAI  F       + + +R   C+ID       ++R   P V +  + ++       +
Sbjct: 57  LDDAIDLFG------YMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCN 110

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +Y F +L+   C   K+  A   F +  K G H + V+F+TL++G C    + E      
Sbjct: 111 IYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFH 170

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +     +P+V  ++ L+NGLC+E R+ +A  LL  M E GL PN + + T++DG CK G
Sbjct: 171 QI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 226

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
             D    +   RK+ +    + + P+ + Y+ ++DG  K+G    A ++  EM ++GI  
Sbjct: 227 --DTVSALNLLRKMEE---VSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP 281

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   +  +I+GFC  G+  EA+R+LREM +  + PD  T++++I+   K G       L 
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM   G +P   TYN++++G  K  +L  A  +   M   G  PD IT++IL++G+C  
Sbjct: 342 NEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGA 401

Query: 429 GNPEDFDKL---QSEKGLVSDYACYTSLV 454
              +D  KL    S +GLV++   YT+L+
Sbjct: 402 KRVDDGMKLLHEMSRRGLVANTITYTTLI 430



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N+L+  L  EGK  +A+ +++E   RGL    +++N++I+G CK   LDE  ++
Sbjct: 502 PDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQM 561

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PDV T++ LING CK  R+ D   +  EM  RG+  N + + TLI G C+
Sbjct: 562 FDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQ 621

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            G I+ A D      I  EM ++G+ PD IT   +L G   + +L+ A+ 
Sbjct: 622 VGNINGALD------IFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQ 665


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 175/309 (56%), Gaps = 6/309 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  + +L+ + CKEG++++A+ V DE   +GL   AV +N LI+  CK + + + 
Sbjct: 437 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G +PD++T+++LI GLCK N+ ++A  L  +M   G+  N + + TLI  
Sbjct: 497 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 556

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G       M+EA K+V++M   G   D ITY  L+   C+ G++E  L + ++M+ 
Sbjct: 557 FLRRGA------MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 610

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  +N++   LI+G CR G +  A   LR+M+  GL PD  TY  +I+  CK G  + 
Sbjct: 611 KGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQE 670

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +++ +G  P   TYN L++  CK G   +A++LL   +D G +P+++T+ IL+ 
Sbjct: 671 ALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVS 730

Query: 424 GHCKHGNPE 432
              K G+ E
Sbjct: 731 NFIKEGDQE 739



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 194/407 (47%), Gaps = 78/407 (19%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G++P+ + + VLMH LC+ GK+ +A+M+ ++      +   V FNTLING+     LDE 
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVLFNTLINGYVSRGRLDEA 390

Query: 184 FRLKSVMEGS----GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
              K+VM  S    G  PD++TY+ LI GLCK+  L  A  L++EM  +G  PN + +T 
Sbjct: 391 ---KAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTI 447

Query: 240 LIDGHCKNGRI---------------------------------------DMAGDM---- 256
           LID  CK GR+                                       +M GDM    
Sbjct: 448 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKG 507

Query: 257 ---------------------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
                                +EA  +  +M   G+  + ITY  L+  F + G ++ AL
Sbjct: 508 CKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEAL 567

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  +M+ RG  LD++ +  LI   CR G + +   +  +M+  GL P++ +  ++I+  
Sbjct: 568 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 627

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G+ +     L++M   G  P + TYN+L+NGLCK G+ + A  L D +   G+ PD 
Sbjct: 628 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 687

Query: 416 ITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           ITYN L+  HCK G  +D   L S   + G + +   +  LVS   K
Sbjct: 688 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 734



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/423 (30%), Positives = 199/423 (47%), Gaps = 50/423 (11%)

Query: 82  FRLLRKHYFR--IPARGCRCLIDR-------------------MMRTNLPTVTLGFYLEI 120
           F L+ KHY R  +P +  R L+D                    ++  N P V    + E+
Sbjct: 167 FILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEM 226

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G SP+VY F V+M  LC   ++  A  +  +  + G    A+ + TLI+   K   +
Sbjct: 227 LSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRV 286

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +E  +L   M   G  PDV T++  I+GLCK  R+ +A  L+  M  RG TPN   +  L
Sbjct: 287 NEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVL 346

Query: 241 IDGHCKNGRIDMA-------------------------GDMKEARKIVDE-MCTNGLNPD 274
           + G C+ G++D A                         G + EA+ ++ E M + G  PD
Sbjct: 347 MHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPD 406

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY  L+ G CK+G L SA ++  EM  +G E + + +T LI  FC+ G++ EA  +L 
Sbjct: 407 IFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLD 466

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM   GL  +   Y  +I   CK+   +    +  +M S G  P + T+N+L+ GLCK  
Sbjct: 467 EMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVN 526

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           + + A  L   ML  GV+ + ITYN L+    + G  ++  KL ++   +G   D   Y 
Sbjct: 527 KFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYN 586

Query: 452 SLV 454
            L+
Sbjct: 587 GLI 589



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 6/333 (1%)

Query: 30  LHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89
           L L + KKG   SA    + ++ +G     +    L+  +   G L++A      +    
Sbjct: 413 LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 472

Query: 90  FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
             + A G  CLI  + +       L  + ++   G  P ++ FN L+  LCK  K ++A 
Sbjct: 473 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 532

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            ++ +    G+ A  +++NTLI+   +   + E  +L + M   G   D  TY+ LI  L
Sbjct: 533 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 592

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C+   ++    L  +M  +GL PN++    LI+G C+ G I      + A + + +M   
Sbjct: 593 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI------QHALEFLRDMIHR 646

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD +TY  L++G CK G  + AL++  ++   GI  D + +  LIS  C+ G   +A
Sbjct: 647 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 706

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             +L   +  G  P++ T+ +++  F K GD +
Sbjct: 707 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y +L+D     G+ ++   +  +M + GI      F  ++  + R G   +A R+L +M
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 190

Query: 337 LKV-GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
             V   +P   +Y +V+D        K    +  EM S G  P V T+  +M  LC   +
Sbjct: 191 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNE 250

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           + +A  LL  M   G VP+ I Y  L+    K G
Sbjct: 251 VDSACALLKDMTRHGCVPNAIVYQTLIHALSKVG 284


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 204/398 (51%), Gaps = 12/398 (3%)

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
           V+ D G +D A++ +R   K +  +P    C  L++ +++     +    Y E++D    
Sbjct: 110 VFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGE 169

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
              Y   +++  LCKEGK++D   + ++   RG     V +NTLI+G+CK  + +    L
Sbjct: 170 VDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVL 229

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              ++  G  P V TY A+ING CK+ + +  + LL EM ERGL  +  I+  +ID   K
Sbjct: 230 FKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFK 289

Query: 247 NG-RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +G RI       EA   V  M  +G +PD  TY IL+ G C  G++  A  + ++ IKRG
Sbjct: 290 HGCRI-------EAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRG 342

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V++T LI  +C+ G+ + A  +L +M + G KPD  TY  +I      G+     
Sbjct: 343 LLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVAL 402

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +  +M   G LP    YN LM+GLCK G+L  A +LL  MLD  V PD      L++G 
Sbjct: 403 TVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGF 462

Query: 426 CKHGNPEDFDK---LQSEKGLVSDYACYTSLVSKSSKY 460
            +HG+ E+  K   L  EKG+      Y +++    K+
Sbjct: 463 IRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKF 500



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 170/338 (50%), Gaps = 13/338 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T+G+   ++  G  P +  +N+L+   C  G++  A+ + ++  KRGL    VS+  LI+
Sbjct: 299 TVGW---MIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIH 355

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
            +CK         L   M   G +PD+ TY+ALI+GL     +D A  + ++M E+G+ P
Sbjct: 356 NYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLP 415

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +  I+  L+ G CK GR      +  A+ ++ EM    + PD      L+DGF + GD E
Sbjct: 416 DANIYNVLMSGLCKKGR------LPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFE 469

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  + +  I++GI+   V + A+I G+C+ G + +A    + M++    PD+ TY+ +I
Sbjct: 470 EAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTII 529

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D + K  D     R+   M      P V TY  L+NG C  G +  A      ML L + 
Sbjct: 530 DGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLK 589

Query: 413 PDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           P+ +TY IL+   CK  N       F+++  EK L +D
Sbjct: 590 PNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPND 627



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 177/394 (44%), Gaps = 76/394 (19%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +  L+H  CK+G+   A  +  +  +RG     V++  LI+G   A  +D  
Sbjct: 342 GLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVA 401

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +++ M   G+ PD   Y+ L++GLCK+ RL  A++LL EM ++ + P+  I  TL+DG
Sbjct: 402 LTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDG 461

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
             ++G  + A                             G MK+A      M     +PD
Sbjct: 462 FIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPD 521

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           + TY+ ++DG+ K  DL  AL +   M+K   + + V +T LI+GFC  G +  AE+  +
Sbjct: 522 EFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFK 581

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG----- 389
           +ML + LKP+  TYT++I CFCK  +        ++M  +  LP   TYN LMNG     
Sbjct: 582 QMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTNNV 641

Query: 390 ------------------------------------------LCKHGQLKNANMLLDTML 407
                                                     LC+H  +K+A  L D M+
Sbjct: 642 DFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRDKMM 701

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441
             G +PD ++   LL G C  G  +D++ + S K
Sbjct: 702 SKGFLPDPVSLVALLHGLCLEGRSQDWNNVISCK 735



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 53/369 (14%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V L    ++++ G  P   ++NVLM  LCK+G++  A+++  E   + +   A    TL+
Sbjct: 400 VALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLV 459

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G  +  + +E  +L  +    G+ P V  Y+A+I G CK   + DA L    M +   +
Sbjct: 460 DGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHS 519

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P++  ++T+IDG+ K        D+  A ++   M      P+ +TYT+L++GFC  GD+
Sbjct: 520 PDEFTYSTIIDGYIK------MNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDI 573

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A    K+M+   ++ + V +T LI  FC+G  + +A     +ML     P+D TY  +
Sbjct: 574 NRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYL 633

Query: 352 ID-----------------------------------------------CFCKNGDTKTG 364
           ++                                               C C++   K  
Sbjct: 634 MNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHA 693

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L  +M S G LP   +  AL++GLC  G+ ++ N ++   L+   +   + Y+  L+ 
Sbjct: 694 LHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQDWNNVISCKLNERELQVAVKYSEKLDA 753

Query: 425 HCKHGNPED 433
               G   +
Sbjct: 754 FLSQGQTSE 762


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 175/309 (56%), Gaps = 6/309 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  + +L+ + CKEG++++A+ V DE   +GL   AV +N LI+  CK + + + 
Sbjct: 419 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G +PD++T+++LI GLCK N+ ++A  L  +M   G+  N + + TLI  
Sbjct: 479 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 538

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G       M+EA K+V++M   G   D ITY  L+   C+ G++E  L + ++M+ 
Sbjct: 539 FLRRGA------MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 592

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  +N++   LI+G CR G +  A   LR+M+  GL PD  TY  +I+  CK G  + 
Sbjct: 593 KGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQE 652

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +++ +G  P   TYN L++  CK G   +A++LL   +D G +P+++T+ IL+ 
Sbjct: 653 ALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVS 712

Query: 424 GHCKHGNPE 432
              K G+ E
Sbjct: 713 NFIKEGDQE 721



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 194/407 (47%), Gaps = 78/407 (19%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G++P+ + + VLMH LC+ GK+ +A+M+ ++      +   V FNTLING+     LDE 
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVLFNTLINGYVSRGRLDEA 372

Query: 184 FRLKSVMEGS----GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
              K+VM  S    G  PD++TY+ LI GLCK+  L  A  L++EM  +G  PN + +T 
Sbjct: 373 ---KAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTI 429

Query: 240 LIDGHCKNGRI---------------------------------------DMAGDM---- 256
           LID  CK GR+                                       +M GDM    
Sbjct: 430 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKG 489

Query: 257 ---------------------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
                                +EA  +  +M   G+  + ITY  L+  F + G ++ AL
Sbjct: 490 CKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEAL 549

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  +M+ RG  LD++ +  LI   CR G + +   +  +M+  GL P++ +  ++I+  
Sbjct: 550 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 609

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G+ +     L++M   G  P + TYN+L+NGLCK G+ + A  L D +   G+ PD 
Sbjct: 610 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 669

Query: 416 ITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           ITYN L+  HCK G  +D   L S   + G + +   +  LVS   K
Sbjct: 670 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 716



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/423 (30%), Positives = 199/423 (47%), Gaps = 50/423 (11%)

Query: 82  FRLLRKHYFR--IPARGCRCLIDR-------------------MMRTNLPTVTLGFYLEI 120
           F L+ KHY R  +P +  R L+D                    ++  N P V    + E+
Sbjct: 149 FILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEM 208

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G SP+VY F V+M  LC   ++  A  +  +  + G    A+ + TLI+   K   +
Sbjct: 209 LSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRV 268

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +E  +L   M   G  PDV T++  I+GLCK  R+ +A  L+  M  RG TPN   +  L
Sbjct: 269 NEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVL 328

Query: 241 IDGHCKNGRIDMA-------------------------GDMKEARKIVDE-MCTNGLNPD 274
           + G C+ G++D A                         G + EA+ ++ E M + G  PD
Sbjct: 329 MHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPD 388

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY  L+ G CK+G L SA ++  EM  +G E + + +T LI  FC+ G++ EA  +L 
Sbjct: 389 IFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLD 448

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM   GL  +   Y  +I   CK+   +    +  +M S G  P + T+N+L+ GLCK  
Sbjct: 449 EMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVN 508

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           + + A  L   ML  GV+ + ITYN L+    + G  ++  KL ++   +G   D   Y 
Sbjct: 509 KFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYN 568

Query: 452 SLV 454
            L+
Sbjct: 569 GLI 571



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 159/335 (47%), Gaps = 6/335 (1%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
           + L L + KKG   SA    + ++ +G     +    L+  +   G L++A      +  
Sbjct: 393 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 452

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
               + A G  CLI  + +       L  + ++   G  P ++ FN L+  LCK  K ++
Sbjct: 453 KGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEE 512

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  ++ +    G+ A  +++NTLI+   +   + E  +L + M   G   D  TY+ LI 
Sbjct: 513 ALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIK 572

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
            LC+   ++    L  +M  +GL PN++    LI+G C+ G I      + A + + +M 
Sbjct: 573 ALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI------QHALEFLRDMI 626

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GL PD +TY  L++G CK G  + AL++  ++   GI  D + +  LIS  C+ G   
Sbjct: 627 HRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFD 686

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +A  +L   +  G  P++ T+ +++  F K GD +
Sbjct: 687 DAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 197/391 (50%), Gaps = 6/391 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D+A+Q F  + +      +     LID + +          + ++L  G +PS   +  
Sbjct: 304 IDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTS 363

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+H LC      DA+ +F +  +RG   + V++N +I+  CK   L+E   L   M   G
Sbjct: 364 LIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDG 423

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA- 253
             PDV TY+ +++GLCK +R+++A LL +EM   G TPN     T+I G C+  +ID A 
Sbjct: 424 HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQAC 483

Query: 254 --GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
             G + EA +++  M  +G  PD +TY+ L+ G C    ++ A  + ++M+KR  +   V
Sbjct: 484 QRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 543

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
               LI G C+ G++ EA  +L  M+  G  PD  TY  ++   C+ G T+    LL +M
Sbjct: 544 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 603

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            + G  P V TY AL++GLCK  +L  A  +   M   G  P+  TY  L+ G C  G  
Sbjct: 604 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV 663

Query: 432 EDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           +   KL  E    G+  D+  Y +L ++  K
Sbjct: 664 DGGLKLFGEMVCAGISPDHVVYGTLAAELCK 694



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 232/493 (47%), Gaps = 76/493 (15%)

Query: 23  HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82
           +S A +++ + + K      A   A  +  +   L    LD++++  +D G +D+A+Q +
Sbjct: 144 NSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVY 203

Query: 83  RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL----DYGYSPSVYVFNVLMHK 138
           R  R+         C   ++ ++        +    E+L    D   +P    +  ++  
Sbjct: 204 RENRRE-------PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDG 256

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAV---------SFNTLINGHCKAKNLDEGFRLKSV 189
           LCK G++++A  +   FG R L +++           +N +I G C+   +DE  ++   
Sbjct: 257 LCKAGRVEEAVRL---FGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEK 313

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M    + PD ++Y  LI+GL K  +L+DA  L  ++   G+TP+ V +T+LI G C    
Sbjct: 314 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLC---- 369

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             MA    +AR++  +M   G  P  +TY +++D  CK G LE A D+ K+MI+ G   D
Sbjct: 370 --MANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD 427

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV---------IDCFCKNGD 360
            V +  ++ G C+  +V EA  +  EM ++G  P+  ++  +         ID  C+ G 
Sbjct: 428 VVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGK 487

Query: 361 TKTGFRLLKEMRSDGHLPAVETY-----------------------------------NA 385
               FRLLK M  DGH+P V TY                                   N 
Sbjct: 488 LDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNT 547

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KG 442
           L++GLCK G++K A  +LD M+  G  PD +TYN L+ GHC+ G  E   +L S+   +G
Sbjct: 548 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 607

Query: 443 LVSDYACYTSLVS 455
           L  +   YT+LVS
Sbjct: 608 LAPNVVTYTALVS 620



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 155/290 (53%), Gaps = 15/290 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G+ P V  +N +M  LCK  ++++A ++F+E  + G      S NT+I G C+  
Sbjct: 418 KMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQS 477

Query: 179 N---------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
                     LDE FRL   M   G  PDV TYS LI+GLC   R+DDA  LL +M +R 
Sbjct: 478 KIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 537

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             P  V   TLI G CK GRI      KEAR+++D M ++G +PD +TY  L+ G C+ G
Sbjct: 538 CKPTVVTQNTLIHGLCKAGRI------KEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 591

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             E A ++  +M+ RG+  + V +TAL+SG C+  ++ EA  +  +M   G  P+  TYT
Sbjct: 592 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 651

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +I  FC  G    G +L  EM   G  P    Y  L   LCK G+   A
Sbjct: 652 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 701



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 185/385 (48%), Gaps = 53/385 (13%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LEI+    S +   +N+++  LCK  ++ DA  +     ++ +   A S ++++ G   +
Sbjct: 137 LEIMPVANSSA---YNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDS 193

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +DE  +   V   +   P + T + L+ G C   ++D A  LL  M +    P++V +
Sbjct: 194 GRIDEALQ---VYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSY 250

Query: 238 TTLIDGHCKNGRIDMA----GD-------------------------------MKEARKI 262
            T++DG CK GR++ A    GD                               + EA ++
Sbjct: 251 CTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQM 310

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            ++M    ++PD  +Y IL+DG  K G L  A ++ ++++  G+    VA+T+LI G C 
Sbjct: 311 FEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCM 370

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
                +A  +  +M + G  P   TY ++ID  CK G  +    L+K+M  DGH+P V T
Sbjct: 371 ANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVT 430

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----------PE 432
           YN +M+GLCK  +++ A +L + M  LG  P+  ++N ++ G C+              E
Sbjct: 431 YNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDE 490

Query: 433 DFDKLQ--SEKGLVSDYACYTSLVS 455
            F  L+  ++ G V D   Y++L+S
Sbjct: 491 AFRLLKRMTDDGHVPDVVTYSTLIS 515



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 170/420 (40%), Gaps = 81/420 (19%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             +++  +SP   V+NVL+  L K  + +  + +      RG    + +F T++ G CKA
Sbjct: 33  FSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKA 92

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYT-------------------------------YSALI 206
             +DE   +   M    + P   T                               Y+ ++
Sbjct: 93  GKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVANSSAYNIVV 152

Query: 207 NGLCKENRLDDAELLLHEMCERGLT--------------------------------PND 234
             LCK  R+DDA  L   M E+ +                                 P  
Sbjct: 153 VALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCL 212

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V    L++G C  G++D A ++   R + DE C     PD+++Y  +LDG CK G +E A
Sbjct: 213 VTLNVLLEGFCSRGQVDKAREL--LRAMPDEECA----PDEVSYCTVLDGLCKAGRVEEA 266

Query: 295 LDI--RKEMIKRGIELDNV----AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           + +   +E+        +      +  +I G C+  ++ EA +M  +M +  + PD  +Y
Sbjct: 267 VRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSY 326

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            ++ID   K G       L +++   G  P+   Y +L++GLC      +A  L   M  
Sbjct: 327 GILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR 386

Query: 409 LGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS---KSSKYRQ 462
            G  P  +TYN++++  CK G  E   D  K   E G V D   Y +++    KSS+  +
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 446



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 16/288 (5%)

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRL 215
           ++G+    + F ++I G C      E  ++ S+ME      PDV  Y+ LI+ L K    
Sbjct: 3   QQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDV--YNVLIDSLSKRQET 60

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           +  + ++  M +RG  P+   FTT++ G CK G++D      EA  ++DEM +  + P  
Sbjct: 61  EAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMD------EAELVMDEMRSRMIPPYF 114

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            T + L    C  G +E A  + + M       ++ A+  ++   C+  +V +A  + R 
Sbjct: 115 ATSSFLAHELCLRGSMERAFQLLEIMPV----ANSSAYNIVVVALCKAARVDDALELART 170

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M +  +     +   V+     +G      ++ +E R +   P + T N L+ G C  GQ
Sbjct: 171 MSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRRE---PCLVTLNVLLEGFCSRGQ 227

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL 443
           +  A  LL  M D    PD+++Y  +L+G CK G  E+  +L  ++ L
Sbjct: 228 VDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDREL 275



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 111/263 (42%), Gaps = 46/263 (17%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M ++G+ P  ++FT++I G C  GR        EA KI   M     +P    Y +L+D 
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRT------FEAVKIFSLM-EECHSPYPDVYNVLIDS 53

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
             K  + E+   + + M+ RG   D+  FT ++ G C+ GK+ EAE ++ EM    + P 
Sbjct: 54  LSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPY 113

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
            AT + +    C  G  +  F+LL+ M     +     YN ++  LCK  ++ +A  L  
Sbjct: 114 FATSSFLAHELCLRGSMERAFQLLEIM----PVANSSAYNIVVVALCKAARVDDALELAR 169

Query: 405 TM-------------------LDLGVV-------------PDDITYNILLEGHCKHGNPE 432
           TM                   +D G +             P  +T N+LLEG C  G   
Sbjct: 170 TMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQ-- 227

Query: 433 DFDKLQSEKGLVSDYACYTSLVS 455
             DK +     + D  C    VS
Sbjct: 228 -VDKARELLRAMPDEECAPDEVS 249


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 231/456 (50%), Gaps = 13/456 (2%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLV 61
           FR +  ++  + H +       + R +L+ +V ++G GS+ SL   +  + R   L  +V
Sbjct: 111 FRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLCELLCNSFRDWDLNNVV 170

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            D L   Y     + DA+     ++    ++       L+  +  T+   +    Y EI 
Sbjct: 171 WDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTD---IMWDVYNEIK 227

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G   + Y   +L+  LC++ +++DA     E G      + VSFN L++G CK  ++D
Sbjct: 228 ASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVD 287

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
                  +M   G+ PDVY+Y+ L++GLC    +++A    ++M   G+ P+ V +  L 
Sbjct: 288 VAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILA 347

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G        + G +  A K+V  M  NGLNPD +TYTIL+ G C+ G++E +  ++++M
Sbjct: 348 NG------FRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKM 401

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           + +G++L  V +T L+S  C+ G++ EA  +L EM  +GLKPD  TY+++I   CK G  
Sbjct: 402 LSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAV 461

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L +EM S    P     +A+++GL + G +  A M  D++    V  + I YNI+
Sbjct: 462 EEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIM 521

Query: 422 LEGHCKHGNPEDFD---KLQSEKGLVSDYACYTSLV 454
           ++G+ K GN  +     K   EKG+      + SL+
Sbjct: 522 IDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 557



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 195/379 (51%), Gaps = 44/379 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G   S+  + VL+  LCK G+I +A ++  E    GL    ++++ LI+G CK  
Sbjct: 400 KMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRG 459

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA--------------ELLLH- 223
            ++E   L   M    + P+ +  SA+I+GL ++  + +A              E++L+ 
Sbjct: 460 AVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYN 519

Query: 224 --------------------EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
                               ++ E+G++P  V F +LI G CK G+      + EA K++
Sbjct: 520 IMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGK------LAEAVKLL 573

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D +  +GL P  +TYT L++G+C+EGD+ S  D+  EM  + I+   + +T ++ G C+ 
Sbjct: 574 DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKE 633

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G++ E+ ++L+ M   GL PD  TY  VI  FCK  D +  F+L  +M      P+  TY
Sbjct: 634 GRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTY 693

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSE 440
           N L+NGLC +G LK+A+ LL T+ D  +    + Y  +++ HC  G+ ++   F     E
Sbjct: 694 NVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVE 753

Query: 441 KGLVSDYACYTSLVSKSSK 459
           +G       Y++++++  K
Sbjct: 754 RGFEVSIRDYSAVINRLCK 772



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 183/346 (52%), Gaps = 9/346 (2%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V   F+  ++ YG  P VY +N+L+H LC  G +++A    ++    G+    V++N L 
Sbjct: 288 VAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILA 347

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG      +   +++   M  +G+ PD+ TY+ LI G C+   ++++  L  +M  +GL 
Sbjct: 348 NGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLK 407

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
            + V +T L+   CK+GRID      EA  ++ EM   GL PD +TY++L+ G CK G +
Sbjct: 408 LSIVTYTVLLSSLCKSGRID------EAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAV 461

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           E A+++ +EM  + I  ++   +A+ISG    G + EA+     + K  +  +   Y ++
Sbjct: 462 EEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIM 521

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID + K G+     R  K++   G  P + T+N+L+ G CK G+L  A  LLDT+   G+
Sbjct: 522 IDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGL 581

Query: 412 VPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYTSLV 454
           VP  +TY  L+ G+C+ G+    FD L     K +      YT +V
Sbjct: 582 VPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVV 627



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 173/359 (48%), Gaps = 6/359 (1%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +++AI+ +  +        +  C  +I  +      +    ++  +     +  + ++
Sbjct: 459 GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILY 518

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+++    K G I +A   + +  ++G+  T V+FN+LI G CK   L E  +L   ++ 
Sbjct: 519 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 578

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P   TY+ L+NG C+E  +     +LHEM  + + P  + +T ++ G CK GR   
Sbjct: 579 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGR--- 635

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              + E+ +++  M   GL PD+ITY  ++  FCK  DL+ A  +  +M++  ++   V 
Sbjct: 636 ---LHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVT 692

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  LI+G C  G + +A+R+L  +    ++     YT +I   C  GD +       +M 
Sbjct: 693 YNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMV 752

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
             G   ++  Y+A++N LCK   + +A      ML  G+ PD     ++L    + G+P
Sbjct: 753 ERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDP 811



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 152/297 (51%), Gaps = 6/297 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y +I++ G SP++  FN L++  CK+GK+ +A  + D     GL  T+V++ TL+NG+C+
Sbjct: 538 YKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCE 597

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             ++   F +   ME   ++P   TY+ ++ GLCKE RL ++  LL  M  RGL P+ + 
Sbjct: 598 EGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQIT 657

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T+I   CK      A D+++A ++ ++M  + L P  +TY +L++G C  G+L+ A  
Sbjct: 658 YNTVIQSFCK------AHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADR 711

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +   +  + I L  VA+T +I   C  G V  A     +M++ G +     Y+ VI+  C
Sbjct: 712 LLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLC 771

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
           K             M + G  P  +    ++N   + G   +   +   M+  G++P
Sbjct: 772 KRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 193/346 (55%), Gaps = 9/346 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           +   + +IL  GY P    F +L+  LC +G++  A    D+   +G     VS+ TLIN
Sbjct: 112 SFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLIN 171

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+        +L   ++G  +RP+V  YS +I+ +CK+  ++DA  L  EM  + ++P
Sbjct: 172 GLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISP 231

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +++LI G C      + G +K A  + + M ++ +NP+  T++IL+DGFCKEG + 
Sbjct: 232 DVVTYSSLISGFC------VVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVR 285

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++   M+K+ ++LD V + +L+ G+C   +V +A+ +   M + G+ PD  +Y+++I
Sbjct: 286 EAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMI 345

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + FCK        +L +EM      P V TYN+L++GLCK G+   A  L+D M D G  
Sbjct: 346 NGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQP 405

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
            + ITYN +L+  CK+ + +    L +   EKG+  D   YT L++
Sbjct: 406 SNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLIN 451



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 168/287 (58%), Gaps = 6/287 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+VY F++L+   CKEGK+++A+ V     K+ +    V++N+L++G+C  K +++   
Sbjct: 265 NPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKS 324

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L +VM   G+ PDV++YS +ING CK   +D+A  L  EM  + + PN V + +L+DG C
Sbjct: 325 LFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLC 384

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+GR   A ++      VDEM   G   + ITY  +LD  CK   ++ A+ +  ++ ++G
Sbjct: 385 KSGRTSCALEL------VDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+ D   +T LI+G C+ G++ +A+++  ++L  G  P+  TYT +I+ FC  G    G 
Sbjct: 439 IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGL 498

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            +L +M+ +G +P   TY  L++ L +  +   A  LL  M+  G++
Sbjct: 499 AMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGLL 545



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 197/404 (48%), Gaps = 6/404 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   +  +G  L  +    L+     +G    A+Q  R +     R     
Sbjct: 141 KGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVM 200

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID M +  L       Y E++    SP V  ++ L+   C  GK+K A  +F+   
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
              ++    +F+ LI+G CK   + E   + +VM    ++ DV TY++L++G C   +++
Sbjct: 261 SDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVN 320

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ L + M +RG+TP+   ++ +I+G CK   +D      EA K+ +EM    + P+ +
Sbjct: 321 KAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVD------EAMKLFEEMHCKQIFPNVV 374

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+DG CK G    AL++  EM  RG   + + + +++   C+   V +A  +L ++
Sbjct: 375 TYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKI 434

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G++PD  TYT++I+  CK G      ++ +++   G+ P + TY +L+NG C  G  
Sbjct: 435 KEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFF 494

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
                +L  M D G +P+ ITY IL+    +    +  +KL  E
Sbjct: 495 DEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLRE 538



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 32/323 (9%)

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
           A+ F  ++    KAK       L   ME +G++PD  T + L+N   +   +  +  +  
Sbjct: 58  AIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFA 117

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------G 254
           ++ ++G  P+ V FT LI G C  G +  A                             G
Sbjct: 118 KILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVG 177

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           + K A +++  +    + P+ + Y+ ++D  CK+  +  A D+  EM+ + I  D V ++
Sbjct: 178 ETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYS 237

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           +LISGFC  GK+  A  +   M+   + P+  T++++ID FCK G  +    +L  M   
Sbjct: 238 SLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKK 297

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
                V TYN+LM+G C   Q+  A  L + M   GV PD  +Y+I++ G CK    ++ 
Sbjct: 298 NVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEA 357

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
            KL  E   K +  +   Y SLV
Sbjct: 358 MKLFEEMHCKQIFPNVVTYNSLV 380



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + + N     +    +I + G  P ++ + VL++ LCK G++ DAQ VF++   +G
Sbjct: 414 ILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKG 473

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++ +LING C     DEG  + S M+ +G  P+  TY  LI+ L +++  D AE
Sbjct: 474 YSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAE 533

Query: 220 LLLHEMCERGL 230
            LL EM  RGL
Sbjct: 534 KLLREMIARGL 544



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P  I +  +L    K    ++AL + ++M   GI+ D +    L++ F + G +  +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             ++LK G  PD  T+T++I   C  G+         ++ + G      +Y  L+NGLC+
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G+ K A  LL  +    V P+ + Y+ +++  CK     D   L  E   K +  D   
Sbjct: 176 VGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVT 235

Query: 450 YTSLVS 455
           Y+SL+S
Sbjct: 236 YSSLIS 241


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 225/439 (51%), Gaps = 19/439 (4%)

Query: 11  STMVHFLVAHKMHSQARDLLHLIV--SKKGMGSSASLFASILETRGTHL------PGLVL 62
           +  VH  VA K  +QA  L   +V  S+   G S++  A+      T L      P   L
Sbjct: 63  AAAVHGTVAAKNFAQAIRLTKSLVQVSRSFPGRSSAATAAGAGAAFTALSSTSTTPAPAL 122

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEIL 121
             L+I    +G LD+A+  FR LR     +PA   C  ++D +++   P      + E+L
Sbjct: 123 GVLVIALSQMGLLDEALYVFRRLRT----LPALPACNAVLDGLVKARRPGCAWELFDEML 178

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G  PSV  +N L++    +G +  AQ V+D+   + +    V++ T+I   C+   + 
Sbjct: 179 RRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIG 238

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  RL   M+ +GM+P+ YTY+ L++G C+ + ++ A +L  E+ + GL PN VIFTTLI
Sbjct: 239 DAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLI 298

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           DG CK  R        EA+ +  EM   G+ P    Y  L+DG  + G+ + AL + +EM
Sbjct: 299 DGFCKAKRFS------EAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEM 352

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + G+  D    + ++ G C GG++  A+R L+ + + G+  + A Y  +ID +C+ G+ 
Sbjct: 353 TRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNL 412

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +        M   G  P V +Y++L++G  K G+++ A  +   M+  G+ P+ +TY  L
Sbjct: 413 EEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTAL 472

Query: 422 LEGHCKHGNPEDFDKLQSE 440
           + GH K+G  +   +L  E
Sbjct: 473 IHGHAKNGGIDAAFRLHKE 491



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 158/333 (47%), Gaps = 27/333 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +    +   G +LE+  +G +P+V V+N LM    + G  ++A  ++ E  + G
Sbjct: 297 LIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLG 356

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     + + ++ G C    +    R    ++  G+  +   Y+ALI+  C+   L++A 
Sbjct: 357 LCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEAL 416

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
                M E G+ PN V +++LIDGH K G+      M+ A  I  EM   G+ P+ +TYT
Sbjct: 417 ATCTRMTEVGIEPNVVSYSSLIDGHSKRGK------MQIAMAIYTEMVAKGIEPNVVTYT 470

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G  K G +++A  + KEMI+ GI  + +  + L+ G CR  +V EA R + E    
Sbjct: 471 ALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEY--S 528

Query: 340 GLKPDD-----ATYTMVIDCFCKN--------------GDTKTGFRLLKEMRSDGHLPAV 380
           GLK  D     + +T+  +C   N              G      +L   MR  G +P  
Sbjct: 529 GLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDS 588

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            TY  L+ G C  G + NA ML   M+ +GV P
Sbjct: 589 FTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP 621



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 168/331 (50%), Gaps = 12/331 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
             VL+  L + G + +A  VF     R L A   + N +++G  KA+     + L   M 
Sbjct: 122 LGVLVIALSQMGLLDEALYVFRRL--RTLPALP-ACNAVLDGLVKARRPGCAWELFDEML 178

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ P V TY+ LIN    +  +  A+ +  +M  + + PN V +TT+I   C+ G I 
Sbjct: 179 RRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCI- 237

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
             GD   A ++ D M   G+ P++ TY +L+ G C+  D+ SA+ + +E++K G+  + V
Sbjct: 238 --GD---AERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAV 292

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            FT LI GFC+  +  EA+ M  EM + G+ P    Y  ++D   ++G+ +    L +EM
Sbjct: 293 IFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEM 352

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G  P   T + ++ GLC  GQ+  A+  L  + + GV  +   YN L++ +C+ GN 
Sbjct: 353 TRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNL 412

Query: 432 EDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           E+        +E G+  +   Y+SL+   SK
Sbjct: 413 EEALATCTRMTEVGIEPNVVSYSSLIDGHSK 443


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 201/386 (52%), Gaps = 14/386 (3%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           L  LD  ++C+R        +        ID+             ++  +  G+ P++  
Sbjct: 154 LEILDSLVRCYREFGGSNLTV----FDIFIDKFRVLGFLNEASSVFIASISEGFFPTLIC 209

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            N LM  L K   +     V+    +  +     ++  +I  HCK  ++ +G  + S ME
Sbjct: 210 CNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME 269

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
               +P+++TY+A I GLC+   +D+A  +   M E+GL P+   +T L+DG CK  R  
Sbjct: 270 KE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKR-- 326

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                KEA+ I + M ++GLNP++ TYT L+DGF KEG++E AL I+ EMI RG++L+ V
Sbjct: 327 ----SKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV 382

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            + A+I G  + G++ +A  +  EML  G++PD  TY ++ID + K+ D      LL EM
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           ++    P+  TY+ L++GLC    L+ AN +LD M+  GV P+   Y  L++ + +    
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502

Query: 432 E---DFDKLQSEKGLVSDYACYTSLV 454
           E   +  K+    G++ D  CY  L+
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLI 528



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 184/370 (49%), Gaps = 34/370 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G   +V  +N ++  + K G++  A  +F+E    G+     ++N LI+G+ K+ 
Sbjct: 371 EMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSH 430

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++ +   L + M+   + P  +TYS LI+GLC  + L  A  +L +M   G+ PN  ++ 
Sbjct: 431 DMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYG 490

Query: 239 TLIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTN 269
           TLI  + +  R +MA ++                             +EA+ ++ +M   
Sbjct: 491 TLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEK 550

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ P+  TY   ++ + K G+++ A    K+M+  GI  +NV +T LI G C  G  VEA
Sbjct: 551 GIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEA 610

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
               + ML+ GL PD   Y+ +I    KNG TK    +  +    G +P V  YN+L++G
Sbjct: 611 LSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE--GHCKHGNPEDFDKLQSE---KGLV 444
            CK G ++ A+ L D ML  G+ P+ + YN L+   G+CK GN  +  KL  E   KG+ 
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGIS 730

Query: 445 SDYACYTSLV 454
            D   Y  L+
Sbjct: 731 PDGYIYCILI 740



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 196/422 (46%), Gaps = 44/422 (10%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           + SK G    A  +   + + G     ++   L+  + D+G   +A+  F+ + +     
Sbjct: 565 LYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIP 624

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
             R    +I  + +       +G +L+ L  G  P V+++N L+   CKEG I+ A  ++
Sbjct: 625 DIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684

Query: 153 DEFGKRGLHATAVSFNTLIN--GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           DE    G++   V +NTLIN  G+CK+ NL E F+L   M   G+ PD Y Y  LI+G  
Sbjct: 685 DEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCG 744

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           KE  L+ A  L HE  ++ +      F +LID  CK+G++       EAR++ D+M    
Sbjct: 745 KEGNLEKALSLFHEAQQKSVGSLSA-FNSLIDSFCKHGKV------IEARELFDDMVDKK 797

Query: 271 LNPDKITYTILLDGFCKEGDLESA-----------------------------------L 295
           L P+ +TYTIL+D + K   +E A                                   +
Sbjct: 798 LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMI 857

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + K+M  RGI  D +A+  + S +C+ GK +EA ++L + L  G+K +D  +  +I   
Sbjct: 858 SLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHL 917

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK     T   LL EM  +    + +T N L+ G  K G    A+ +L  M  LG VP  
Sbjct: 918 CKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTS 977

Query: 416 IT 417
           ++
Sbjct: 978 LS 979



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 167/319 (52%), Gaps = 15/319 (4%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           ++ ++L  G  P+  ++ +L+   C  G   +A   F    ++GL     +++ +I+   
Sbjct: 578 YFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K     E   +      +G+ PDV+ Y++LI+G CKE  ++ A  L  EM   G+ PN V
Sbjct: 638 KNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIV 697

Query: 236 IFTTLID--GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           ++ TLI+  G+CK      +G++ EA K+ DEM + G++PD   Y IL+DG  KEG+LE 
Sbjct: 698 VYNTLINDYGYCK------SGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEK 751

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL +  E  ++ +     AF +LI  FC+ GKV+EA  +  +M+   L P+  TYT++ID
Sbjct: 752 ALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILID 810

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL---G 410
            + K    +   +L  +M +   +P   TY +L   L  + Q+ N   ++    D+   G
Sbjct: 811 AYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSL---LLSYNQIGNRFKMISLFKDMEARG 867

Query: 411 VVPDDITYNILLEGHCKHG 429
           +  D I Y ++   +CK G
Sbjct: 868 IACDAIAYGVMASAYCKEG 886



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 162/327 (49%), Gaps = 13/327 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G  P +  ++ ++H L K GK K+A  VF +F K G+      +N+LI+G CK  +
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALIN--GLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +++  +L   M  +G+ P++  Y+ LIN  G CK   L +A  L  EM  +G++P+  I+
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIY 736

Query: 238 TTLIDGHCKNGRIDMAGDM--KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
             LIDG  K G ++ A  +  +  +K V  +           +  L+D FCK G +  A 
Sbjct: 737 CILIDGCGKEGNLEKALSLFHEAQQKSVGSLSA---------FNSLIDSFCKHGKVIEAR 787

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  +M+ + +  + V +T LI  + +   + EAE++  +M    + P+  TYT ++  +
Sbjct: 788 ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSY 847

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            + G+      L K+M + G       Y  + +  CK G+   A  LL+  L  G+  +D
Sbjct: 848 NQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLED 907

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSEKG 442
             ++ L+   CK        +L SE G
Sbjct: 908 DVFDALIFHLCKEKQISTVLELLSEMG 934



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 84/336 (25%)

Query: 176 KAKNLDEGFRLKSVMEGSGMR---PD-VYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +   +D+  RL++    S  +   P  +++YS L   LC    +  A+ +L ++ +    
Sbjct: 93  QKSEIDDSVRLQNFFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKP 152

Query: 232 P-----------------NDVIFTTLIDGH---------------------------CKN 247
           P                 N  +F   ID                             C N
Sbjct: 153 PLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 248 GRIDM--AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD--------------- 290
              D+  A  M    K+   M    + PD  TYT ++   CK GD               
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC 272

Query: 291 -------------------LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
                              ++ AL+++K M+++G+  D   +T L+ GFC+  +  EA+ 
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +   M   GL P+  TYT +ID F K G+ +   R+  EM + G    V TYNA++ G+ 
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           K G++  A  L + ML  G+ PD  TYN+L++G+ K
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLK 428



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 96/273 (35%), Gaps = 59/273 (21%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKK-------------------GMGSSASLF 46
           +L A+++++     H    +AR+L   +V KK                    M  +  LF
Sbjct: 766 SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLF 825

Query: 47  ASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
              +ETR      L   +L++ Y  +G     I  F+        + ARG  C       
Sbjct: 826 LD-METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFK-------DMEARGIAC------- 870

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
                       + + YG   S Y         CKEGK  +A  + ++    G+      
Sbjct: 871 ------------DAIAYGVMASAY---------CKEGKSLEALKLLNKSLVEGIKLEDDV 909

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           F+ LI   CK K +     L S M    +     T + L+ G  K    D+A  +L  M 
Sbjct: 910 FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQ 969

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
             G  P  +  T  I      GR DM  D+ + 
Sbjct: 970 RLGWVPTSLSLTDSIS----TGRDDMKSDISQV 998



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +++   M     +P V TY  ++   CK G +    M+L  M +    P+  TYN  + G
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGG 285

Query: 425 HCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            C+ G  ++     KL  EKGL  D   YT LV    K ++ +
Sbjct: 286 LCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 147/473 (31%), Positives = 230/473 (48%), Gaps = 33/473 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIV----------SKKGMGSSASLFASILET 52
           FR T+H+Y T++  L+  K    AR LL  ++          S+K     A+    +   
Sbjct: 105 FRFTIHSYCTLILLLIRSKFIPPARLLLIRLIDGNLPVLNLDSEKFHIEIANALFGLTSV 164

Query: 53  RGTHLPGLVLDALMIVYV----DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
            G        D L+ VY     +LGF   A+  F LL +       + C  L+  +++ N
Sbjct: 165 VGRFEWTQAFDLLIHVYSTQFRNLGF-SCAVDVFYLLARKGTFPSLKTCNFLLSSLVKAN 223

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
                   +  ++  G  P V+ F  +++ LCK GK+++A  +F +  K G+    V++N
Sbjct: 224 EFEKCCEVF-RVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYN 282

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            +ING C+   LD  F LK  M   G++P++ TY ALINGL K N  D    +L EM   
Sbjct: 283 CIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGS 342

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G  PN V+F  LIDG+CK G I+       A KI D M +  + P  +T   L+ GFCK 
Sbjct: 343 GFNPNVVVFNNLIDGYCKMGNIE------GALKIKDVMISKNITPTSVTLYSLMQGFCKS 396

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             +E A +  +E++  G+ +      +++   C+  +   A R  + ML    +P D   
Sbjct: 397 DQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 456

Query: 349 TMVIDCFCKNGD----TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           TM++   CK+G     T+  FRLL++    G   +  T NAL++GLC  G+L  A+ ++ 
Sbjct: 457 TMLVCGLCKDGKHLEATELWFRLLEK----GSPASKVTSNALIHGLCGAGKLPEASRIVK 512

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            ML+ G+  D ITYN L+ G C  G  E   +L+ E   +G+  D   Y  L+
Sbjct: 513 EMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLL 565



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 181/341 (53%), Gaps = 9/341 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +L+ G   S    N L+H LC  GK+ +A  +  E  +RGL    +++N LI G C 
Sbjct: 476 WFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCN 535

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              ++  FRL+  M   G++PD+YTY+ L+ GLC   +LDDA  L  E    GL  N   
Sbjct: 536 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHT 595

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +  +++G+CK  RI+      +   + +E+ +  +  + I Y I++   C+ G++ +AL 
Sbjct: 596 YGIMMEGYCKANRIE------DVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQ 649

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + + M  +GI  +   +++LI G C  G V +A+ ++ EM K G  P+   YT +I  +C
Sbjct: 650 LLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYC 709

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G   T      EM S    P   TY  +++G CK G ++ AN LL  M + G+VPD +
Sbjct: 710 KLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVV 769

Query: 417 TYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           TYN+L  G CK  + ++  K+    + +GL  D   YT+LV
Sbjct: 770 TYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 167/306 (54%), Gaps = 6/306 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+ G       +N L+   C EGK++    + +E  KRG+     ++N L+ G C   
Sbjct: 513 EMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVG 572

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD+  +L    + SG+  +++TY  ++ G CK NR++D E L +E+  + +  N +++ 
Sbjct: 573 KLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYN 632

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I  HC+NG +        A ++++ M + G+ P+  TY+ L+ G C  G +E A  + 
Sbjct: 633 IIIKAHCQNGNV------AAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 686

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM K G   + V +TALI G+C+ G++  AE    EM+   + P+  TYT++ID +CK 
Sbjct: 687 DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKL 746

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    LL +M+  G +P V TYN L NG CK   + NA  + D M   G+  D+ITY
Sbjct: 747 GNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITY 806

Query: 419 NILLEG 424
             L+ G
Sbjct: 807 TTLVHG 812



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 179/339 (52%), Gaps = 9/339 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L   + PS  +  +L+  LCK+GK  +A  ++    ++G  A+ V+ N LI+G C A  
Sbjct: 444 MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGK 503

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L E  R+   M   G+  D  TY+ALI G C E +++    L  EM +RG+ P+   +  
Sbjct: 504 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 563

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+ G C  G++D      +A K+ DE   +GL  +  TY I+++G+CK   +E   ++  
Sbjct: 564 LLRGLCNVGKLD------DAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFN 617

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           E++ + +EL+++ +  +I   C+ G V  A ++L  M   G+ P+ ATY+ +I   C  G
Sbjct: 618 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG 677

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +    L+ EMR +G +P V  Y AL+ G CK GQ+  A      M+   + P+  TY 
Sbjct: 678 LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYT 737

Query: 420 ILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           ++++G+CK GN E  + L     E G+V D   Y  L +
Sbjct: 738 VMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTN 776



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 164/334 (49%), Gaps = 38/334 (11%)

Query: 19  AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           A K+ S A  L+H +     +  ++ +   +LE RG  +  +  +AL++ + + G ++  
Sbjct: 486 ASKVTSNA--LIHGLCGAGKLPEASRIVKEMLE-RGLPMDRITYNALILGFCNEGKVEG- 541

Query: 79  IQCFRL---LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
             CFRL   + K   +        L+  +         +  + E    G   +++ + ++
Sbjct: 542 --CFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIM 599

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           M   CK  +I+D + +F+E   + +   ++ +N +I  HC+  N+    +L   M+  G+
Sbjct: 600 MEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI 659

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-- 253
            P+  TYS+LI+G+C    ++DA+ L+ EM + G  PN V +T LI G+CK G++D A  
Sbjct: 660 LPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAES 719

Query: 254 ---------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
                                      G+M++A  ++ +M  +G+ PD +TY +L +GFC
Sbjct: 720 TWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFC 779

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           K  D+++A  +  +M   G+ +D + +T L+ G+
Sbjct: 780 KANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 813


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 183/340 (53%), Gaps = 9/340 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  GY P V  ++ +++ LCK G    A  +  +  ++G     V ++T+I+  CK K
Sbjct: 72  EMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDK 131

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E     S M   G+ P+V TYS++++G C   R ++A  L  +M ER + P+ V F 
Sbjct: 132 LITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFN 191

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG  K G I       EA+ + + M   G+ P+  TY  L+DG+C +  ++ A  + 
Sbjct: 192 ILVDGLSKEGMI------LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLF 245

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+++G      ++  LI G C+ G++ EA+ +L EM    L PD  TY+ ++  FC++
Sbjct: 246 NIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQD 305

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +   +LL+EMRS G LP + TY+ +++GLCK G L  A  LL  M +  + P+   Y
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            IL++G C  G  E   +L S    KG+  D   YT ++S
Sbjct: 366 TILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMIS 405



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 179/316 (56%), Gaps = 9/316 (2%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R+N  T     + ++++    P    FN+L+  L KEG I +AQ VF+   ++G+     
Sbjct: 167 RSNEAT---SLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVN 223

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N L++G+C    +DE  +L ++M   G  P V +Y+ LI G CK  R+D+A+ LL EM
Sbjct: 224 TYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM 283

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             + LTP+ V ++TL+ G C++GR       ++A+K+++EM + GL PD +TY+I+LDG 
Sbjct: 284 SHKALTPDTVTYSTLMKGFCQDGRP------QDAQKLLEEMRSYGLLPDLMTYSIVLDGL 337

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK+G L+ A ++ K M +  IE +   +T LI G C  GK+  A  +   +   G++PD 
Sbjct: 338 CKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDV 397

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TYT++I    K G +     L ++M   G LP   TYN ++ G  ++G   NA  L++ 
Sbjct: 398 VTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEE 457

Query: 406 MLDLGVVPDDITYNIL 421
           M+  G   D  T+ +L
Sbjct: 458 MVGRGFSADSSTFQML 473



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 170/330 (51%), Gaps = 11/330 (3%)

Query: 127 PSVYVFNVLMHKLCKEGK--IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           P VY   +L++  C         A  V     K GL    V+F+TL+NG      + +  
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +L   M   G  PDV TYS +INGLCK      A  LL +M E+G  PN V+++T+ID  
Sbjct: 68  KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK+  I       EA + + EM   G++P+ +TY+ +L GFC  G    A  + K+M++R
Sbjct: 128 CKDKLI------TEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER 181

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  D V F  L+ G  + G ++EA+ +   M++ G++P+  TY  ++D +C        
Sbjct: 182 NVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +L   M   G  P+V +YN L+ G CK G++  A  LL  M    + PD +TY+ L++G
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKG 301

Query: 425 HCKHGNPEDFDKLQSEK---GLVSDYACYT 451
            C+ G P+D  KL  E    GL+ D   Y+
Sbjct: 302 FCQDGRPQDAQKLLEEMRSYGLLPDLMTYS 331



 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 6/353 (1%)

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           DA++ F  + K  +         +I+ + +    T+ +    ++ + G  P+V V++ ++
Sbjct: 65  DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
             LCK+  I +A     E   RG+    V+++++++G C     +E   L   M    + 
Sbjct: 125 DSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVM 184

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           PD  T++ L++GL KE  + +A+ +   M E+G+ PN   +  L+DG+C   ++D     
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMD----- 239

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            EA+K+ + M   G  P   +Y IL+ G CK G ++ A  +  EM  + +  D V ++ L
Sbjct: 240 -EAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTL 298

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           + GFC+ G+  +A+++L EM   GL PD  TY++V+D  CK G     F LLK M+    
Sbjct: 299 MKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKI 358

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            P +  Y  L+ G+C  G+L+ A  L   +   G+ PD +TY +++ G  K G
Sbjct: 359 EPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGG 411



 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 200/379 (52%), Gaps = 16/379 (4%)

Query: 91  RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++  +GC+        +ID + +  L T  + F  E+++ G SP+V  ++ ++H  C  G
Sbjct: 107 KMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLG 166

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +  +A  +F +  +R +    V+FN L++G  K   + E   +   M   G+ P+V TY+
Sbjct: 167 RSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYN 226

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           AL++G C ++++D+A+ L + M  +G  P+   +  LI GHCK+GRID      EA+ ++
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRID------EAKGLL 280

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM    L PD +TY+ L+ GFC++G  + A  + +EM   G+  D + ++ ++ G C+ 
Sbjct: 281 AEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQ 340

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G + EA  +L+ M +  ++P+   YT++I   C  G  +    L   +   G  P V TY
Sbjct: 341 GHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTY 400

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
             +++GL K G    A  L   M   G +P+  TYN++++G  ++G+  +  +L  E   
Sbjct: 401 TVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVG 460

Query: 441 KGLVSDYACYTSLVSKSSK 459
           +G  +D + +  L    S+
Sbjct: 461 RGFSADSSTFQMLSDLESR 479



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 8/250 (3%)

Query: 190 MEGSGMRPDVYTYSALINGLCKEN--RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           M+ S +RPDVYT + LIN  C  N      A  +L  M + GL PN V F+TL++G    
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            +I       +A K+ DEM   G  PD ITY+ +++G CK G    A+ + K+M ++G +
Sbjct: 61  AKI------IDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCK 114

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V ++ +I   C+   + EA   L EM+  G+ P+  TY+ ++  FC  G +     L
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            K+M     +P   T+N L++GL K G +  A  + +TM++ GV P+  TYN L++G+C 
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 428 HGNPEDFDKL 437
               ++  KL
Sbjct: 235 QSQMDEAQKL 244


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 229/496 (46%), Gaps = 49/496 (9%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL-----ETRGTHLPGLV 61
           L A  T+ H L +++  ++ R LL+ +V+            S +                
Sbjct: 97  LTAVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKF 156

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            D +  VYVD G  ++ ++ F  + K    I  R C   +    +     + L  +  ++
Sbjct: 157 FDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMV 216

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G   +VY   +++  LC+ G+++ ++ +  EF  +G+   A ++NT+IN + K ++  
Sbjct: 217 DSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFS 276

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               +  VM+  G+  +  TY+ L+    K  ++ DAE L  EM ERG+  +  ++T+LI
Sbjct: 277 GVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLI 336

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
             +C+       G+MK A  + DE+   GL+P   TY  L+DG CK G++ +A  +  EM
Sbjct: 337 SWNCRK------GNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEM 390

Query: 302 IKRGIELDNVAFTALISGFCRGGKV----------------------------------- 326
             +G+ +  V F  LI G+CR G V                                   
Sbjct: 391 QSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRY 450

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA++ L  M++ G+K    +YT +ID +CK G+ +   RL  EM S G  P   TYN +
Sbjct: 451 DEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVM 510

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGL 443
           +   CK G++K A  L   M   G+ PD  TY  L+ G C   N ++  +L SE   KGL
Sbjct: 511 IYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGL 570

Query: 444 VSDYACYTSLVSKSSK 459
             +   YT ++S  SK
Sbjct: 571 DQNSVTYTVMISGLSK 586



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 172/327 (52%), Gaps = 11/327 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           + +LM    K GK+ DA+ +FDE  +RG+ +    + +LI+ +C+  N+   F L   + 
Sbjct: 297 YTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELT 356

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ P  YTY ALI+G+CK   +  AE+L++EM  +G+    V+F TLIDG+C+ G +D
Sbjct: 357 EKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVD 416

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 EA  I D M   G   D  T   +   F +    + A      M++ G++L  V
Sbjct: 417 ------EASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTV 470

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           ++T LI  +C+ G V EA+R+  EM   G++P+  TY ++I  +CK G  K   +L   M
Sbjct: 471 SYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANM 530

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            ++G  P   TY +L++G C    +  A  L   M   G+  + +TY +++ G  K G  
Sbjct: 531 EANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKS 590

Query: 432 ED----FDKLQSEKGLVSDYACYTSLV 454
           ++    +D+++  KG   D   YT+L+
Sbjct: 591 DEAFGLYDEMK-RKGYTIDNKVYTALI 616



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           LM + V  G + DA + F  +R+            LI    R          + E+ + G
Sbjct: 300 LMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKG 359

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SPS Y +  L+  +CK G++  A+++ +E   +G++ T V FNTLI+G+C+   +DE  
Sbjct: 360 LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEAS 419

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +  VME  G + DV+T + + +   +  R D+A+  L  M E G+  + V +T LID +
Sbjct: 420 MIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVY 479

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G ++      EA+++  EM + G+ P+ ITY +++  +CK+G ++ A  +R  M   
Sbjct: 480 CKEGNVE------EAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEAN 533

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G++ D+  +T+LI G C    V EA R+  EM   GL  +  TYT++I    K G +   
Sbjct: 534 GMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEA 593

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGL 390
           F L  EM+  G+    + Y AL+  +
Sbjct: 594 FGLYDEMKRKGYTIDNKVYTALIGSM 619



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 6/249 (2%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           V K G   +A +  + ++++G ++  +V + L+  Y   G +D+A   + ++ +  F+  
Sbjct: 374 VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQAD 433

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
              C  +     R         +   +++ G   S   +  L+   CKEG +++A+ +F 
Sbjct: 434 VFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFV 493

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   +G+   A+++N +I  +CK   + E  +L++ ME +GM PD YTY++LI+G C  +
Sbjct: 494 EMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIAD 553

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            +D+A  L  EM  +GL  N V +T +I G  K G+ D      EA  + DEM   G   
Sbjct: 554 NVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSD------EAFGLYDEMKRKGYTI 607

Query: 274 DKITYTILL 282
           D   YT L+
Sbjct: 608 DNKVYTALI 616


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 183/336 (54%), Gaps = 9/336 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I D    P+V ++N ++  LCK+  + +A  ++ E   RG+   A+++ TLI G C    
Sbjct: 141 IEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQ 200

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L   F L   M    + P VY Y+ LIN LCKE  + +A+ LL  M + G+ P  V ++T
Sbjct: 201 LMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYST 260

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+DG+C      + G+++ A++I   M   G+NP+  +Y I+++G CK   ++ A+++ +
Sbjct: 261 LMDGYC------LVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLR 314

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ + +  D V + +LI G C+ G++  A  ++ EM   G   D  TYT ++D  CKN 
Sbjct: 315 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQ 374

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +      L  +M+  G  P + TY AL++GLCK G+LKNA  L   +L  G   D  TY 
Sbjct: 375 NLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYT 434

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           +++ G CK G    FD+  + K  + D  C  + V+
Sbjct: 435 VMISGLCKEGM---FDEALAIKSKMEDNGCIPNAVT 467



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 186/369 (50%), Gaps = 32/369 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P     N LM  LC +G++K +    D+   +G     VS+ TL+NG CK  
Sbjct: 70  KILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG 129

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L  ++E    RP+V  Y+ +I+GLCK+  +++A  L  EM  RG+ P+ + +T
Sbjct: 130 ETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYT 189

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           TLI G C  G++  A                             G++KEA+ ++  M   
Sbjct: 190 TLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKE 249

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ P  +TY+ L+DG+C  G++++A  I   M++ G+  +  ++  +I+G C+  +V EA
Sbjct: 250 GIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEA 309

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +LREML   + PD  TY  +ID  CK+G   +   L+ EM   G    V TY +L++ 
Sbjct: 310 MNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDA 369

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LCK+  L  A  L   M + G+ P   TY  L++G CK G  ++  +L      KG   D
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCID 429

Query: 447 YACYTSLVS 455
              YT ++S
Sbjct: 430 VWTYTVMIS 438



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 180/370 (48%), Gaps = 9/370 (2%)

Query: 78  AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
           A++  R++     R        +ID + +  L       Y E+   G  P    +  L++
Sbjct: 134 AVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIY 193

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197
             C  G++  A  + DE   + ++     +N LIN  CK  N+ E   L +VM   G++P
Sbjct: 194 GFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKP 253

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
            V TYS L++G C    + +A+ + H M + G+ PN   +  +I+G CK  R+D      
Sbjct: 254 GVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVD------ 307

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA  ++ EM    + PD +TY  L+DG CK G + SAL++  EM  RG   D V +T+L+
Sbjct: 308 EAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLL 367

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
              C+   + +A  +  +M + G++P   TYT +ID  CK G  K    L + +   G  
Sbjct: 368 DALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCC 427

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             V TY  +++GLCK G    A  +   M D G +P+ +T+ I++    +    +  +KL
Sbjct: 428 IDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKL 487

Query: 438 QSE---KGLV 444
             E   KGL+
Sbjct: 488 LHEMIAKGLL 497



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 166/297 (55%), Gaps = 6/297 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++    +P VY++N+L++ LCKEG +K+A+ +     K G+    V+++TL++G+C   
Sbjct: 210 EMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVG 269

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +    ++   M   G+ P+VY+Y+ +INGLCK  R+D+A  LL EM  + + P+ V + 
Sbjct: 270 EVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYN 329

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LIDG CK+GRI        A  +++EM   G   D +TYT LLD  CK  +L+ A  + 
Sbjct: 330 SLIDGLCKSGRI------TSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALF 383

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M +RGI+     +TALI G C+GG++  A+ + + +L  G   D  TYT++I   CK 
Sbjct: 384 MKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKE 443

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           G       +  +M  +G +P   T+  ++  L +  +   A  LL  M+  G++  D
Sbjct: 444 GMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVLD 500



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 177/358 (49%), Gaps = 11/358 (3%)

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
           M+  L  ++L   +E+   G   +    N+L++  C  G++  +  V  +  K G     
Sbjct: 23  MKQYLTAISLSKQMEV--KGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDT 80

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           ++ NTL+ G C    + +       +   G + D  +Y  L+NGLCK      A  LL  
Sbjct: 81  ITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRM 140

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           + +R   PN V++ T+IDG CK+  ++      EA  +  EM   G+ PD ITYT L+ G
Sbjct: 141 IEDRSTRPNVVMYNTIIDGLCKDKLVN------EAYDLYSEMDARGIFPDAITYTTLIYG 194

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           FC  G L  A  +  EMI + I      +  LI+  C+ G V EA+ +L  M K G+KP 
Sbjct: 195 FCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPG 254

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY+ ++D +C  G+ +   ++   M   G  P V +YN ++NGLCK  ++  A  LL 
Sbjct: 255 VVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLR 314

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            ML   +VPD +TYN L++G CK G       L +E   +G  +D   YTSL+    K
Sbjct: 315 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCK 372



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 165/333 (49%), Gaps = 9/333 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++P +  FN ++  L K  +   A  +  +   +G+ A  V+ N LIN  C    +   F
Sbjct: 6   HTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSF 65

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +   +   G +PD  T + L+ GLC +  +  +     ++  +G   + V + TL++G 
Sbjct: 66  SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G    A  +K  R I D        P+ + Y  ++DG CK+  +  A D+  EM  R
Sbjct: 126 CKIGETRCA--VKLLRMIEDR----STRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDAR 179

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           GI  D + +T LI GFC  G+++ A  +L EM+   + P    Y ++I+  CK G+ K  
Sbjct: 180 GIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEA 239

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             LL  M  +G  P V TY+ LM+G C  G+++NA  +   M+ +GV P+  +YNI++ G
Sbjct: 240 KNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMING 299

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            CK    ++   L  E   K +V D   Y SL+
Sbjct: 300 LCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLI 332



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 31/147 (21%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
             ++++ + G  P++Y +  L+  LCK G++K+AQ +F     +G      ++  +I+G 
Sbjct: 381 ALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGL 440

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----------------------- 211
           CK    DE   +KS ME +G  P+  T+  +I  L +                       
Sbjct: 441 CKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVLD 500

Query: 212 --------ENRLDDAELLLHEMCERGL 230
                   +N  D AE LLHEM  +GL
Sbjct: 501 FKVADVFVQNENDKAEKLLHEMIAKGL 527



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML V   P    +  ++    K     T   L K+M   G      T N L+N  C  GQ
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQ 60

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTS 452
           +  +  +L  +L LG  PD IT N L++G C  G  +    F      +G   D+  Y +
Sbjct: 61  MAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGT 120

Query: 453 LVSKSSKYRQKR 464
           L++   K  + R
Sbjct: 121 LLNGLCKIGETR 132


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 143/465 (30%), Positives = 239/465 (51%), Gaps = 19/465 (4%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRGTHLPG--L 60
           R+T H Y   VH LV  +M SQA  +L HL ++  G   SA +F+S+L T     P    
Sbjct: 106 RIT-HIYCMAVHILVQAQMPSQAMSVLRHLALT--GFSCSA-IFSSLLRTISRCDPTNLF 161

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
            +D L+  YV  G + DA      + +  F+     C  +++ ++  N       F  E 
Sbjct: 162 SVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKES 221

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD  +   V   N++++ LC +GK+  A+ +  +  K      AV++NT++N + K    
Sbjct: 222 LDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKM-KNCRLPNAVTYNTILNWYVKKGRC 280

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
               R+   ME +G+  D+YTY+ +I+ LCK  R   A LLL  M E  LTP++  + TL
Sbjct: 281 KSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTL 340

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G    G+I++A        I ++M    L P   TYT L+DG+C+ G  + A  +  E
Sbjct: 341 IHGFFGEGKINLA------IYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYE 394

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G+    + ++AL++G+C+  K+  A  +++ +    +  +   YT++ID FC+ G+
Sbjct: 395 MQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGE 454

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                ++LK M +DG  P V TY+AL+NG+CK G +     +L  M   GV+P+++ Y  
Sbjct: 455 VSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTT 514

Query: 421 LLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           L+   CK G+ ++  K   +    GLV++   + +L+   S YR+
Sbjct: 515 LVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALL--CSFYRE 557



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 181/367 (49%), Gaps = 44/367 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P    +N L+H    EGKI  A  +F++  ++ L  +  ++  LI+G+C+    DE  R
Sbjct: 331 TPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARR 390

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M+ +G+RP   TYSAL+NG CK ++L  A  L+  +  R ++ N  ++T LIDG C
Sbjct: 391 VLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFC 450

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       G++ +A++I+  M  +G++PD ITY+ L++G CK G +    +I   M K G
Sbjct: 451 Q------LGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSG 504

Query: 306 IELDNVAFTALISGFC-----------------------------------RGGKVVEAE 330
           +  +NV +T L+  FC                                   R G + EAE
Sbjct: 505 VLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAE 564

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +  + M ++ +  D A++  +ID +C+ G+    F +   M   G  P + TY +L+ GL
Sbjct: 565 QFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGL 624

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDY 447
           C+ G L  A   +  +L+     D+ T N LL G CKHG  +   D  +    + ++ D 
Sbjct: 625 CQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDT 684

Query: 448 ACYTSLV 454
             YT L+
Sbjct: 685 YTYTILL 691



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 187/416 (44%), Gaps = 33/416 (7%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G ++ AI  F  + +   +        LID   R            E+   G  PS   +
Sbjct: 348 GKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTY 407

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L++  CK  K+  A  +      R +      +  LI+G C+   + +  ++   M  
Sbjct: 408 SALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLA 467

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PDV TYSALING+CK   + + + +L  M + G+ PN+V++TTL+   CK G    
Sbjct: 468 DGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKE 527

Query: 253 A-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           A                             G + EA +    M    ++ D  ++  ++D
Sbjct: 528 ALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIID 587

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            +C+ G++  A  +   M++ G   D   + +L+ G C+GG +V+A+  +  +L+     
Sbjct: 588 SYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAI 647

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D+ T   ++   CK+G       L ++M +   LP   TY  L++G CK G++  A +LL
Sbjct: 648 DEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILL 707

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             ML+ G+VPD I Y  LL G    G  +     F ++  ++GL +D   Y S+++
Sbjct: 708 QMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMN 763



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 176/348 (50%), Gaps = 26/348 (7%)

Query: 120  ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAK 178
            +L+ G  P    +  L++ L  EG++K A  +F E   K GL+A  +++N+++NG+ K  
Sbjct: 710  MLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGG 769

Query: 179  NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++E  RL   M  + + P   +Y+ L++G  K+ +L     L  +M + G+ P++V + 
Sbjct: 770  QINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYR 829

Query: 239  TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE---------- 288
             LI G C+ G I++A       K +++M   G+ PD + + IL+  F ++          
Sbjct: 830  LLIFGLCEYGLIEIA------VKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLF 883

Query: 289  ------GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
                  GD++ A +++++M   G+    VA ++++ G C+ GKV EA  +   +++ G+ 
Sbjct: 884  SYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMV 943

Query: 343  PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            P  AT+T ++   CK       F L + M S G    V TYN L+ GLC    + +A  L
Sbjct: 944  PTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDL 1003

Query: 403  LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDY 447
             + M   G++P+  TY  L       G  +D +KL     ++G+V  Y
Sbjct: 1004 YEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSY 1051


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 183/335 (54%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  + V+++ LCK G    A  + ++  +  L    + +NT+I+G CK K++D+ 
Sbjct: 11  GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 70

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M ER + P+   F+ LID 
Sbjct: 71  LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 130

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ DEM    ++P  +TY+ L++GFC    L+ A  + + M+ 
Sbjct: 131 FVKEGK------LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 184

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    D V +  LI GFC+  +V E   + REM + GL  +  TY ++I    + GD   
Sbjct: 185 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 244

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + KEM SDG  P + TYN L++GLCK+G+L+ A ++ + +    + P   TYNI++E
Sbjct: 245 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 304

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  ED   L    S KG+  D   Y +++S
Sbjct: 305 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMIS 339



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 182/331 (54%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V ++N ++  LCK   + DA  +F E   +G+    V++++LI+  C      +  RL
Sbjct: 49  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 108

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            S M    + PDV+T+SALI+   KE +L +AE L  EM +R + P+ V +++LI+G C 
Sbjct: 109 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 168

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + R+D      EA+++ + M +    PD +TY  L+ GFCK   +E  +++ +EM +RG+
Sbjct: 169 HDRLD------EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 222

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V +  LI G  + G    A+ + +EM+  G+ P+  TY  ++D  CKNG  +    
Sbjct: 223 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 282

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + ++     P + TYN ++ G+CK G++++   L   +   GV PD + YN ++ G C
Sbjct: 283 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 342

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           + G+ E+ D L     E G + +  CY +L+
Sbjct: 343 RKGSKEEADALFKEMKEDGTLPNSGCYNTLI 373



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 171/347 (49%), Gaps = 6/347 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA+  F+ +     R        LI  +      +       ++++   +P V+ F+ 
Sbjct: 67  MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 126

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+    KEGK+ +A+ ++DE  KR +  + V++++LING C    LDE  ++   M    
Sbjct: 127 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 186

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TY+ LI G CK  R+++   +  EM +RGL  N V +  LI G  + G  DMA 
Sbjct: 187 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA- 245

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
                ++I  EM ++G+ P+ +TY  LLDG CK G LE A+ + + + +  +E     + 
Sbjct: 246 -----QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 300

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            +I G C+ GKV +   +   +   G+KPD   Y  +I  FC+ G  +    L KEM+ D
Sbjct: 301 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 360

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           G LP    YN L+    + G  + +  L+  M   G   D  T  ++
Sbjct: 361 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 407



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 38/232 (16%)

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGD------------------------------- 290
           ++D M   G  PD +TY ++++G CK GD                               
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 291 ----LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
               ++ AL++ KEM  +GI  + V +++LIS  C  G+  +A R+L +M++  + PD  
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           T++ +ID F K G      +L  EM      P++ TY++L+NG C H +L  A  + + M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +     PD +TYN L++G CK+   E+  ++    S++GLV +   Y  L+ 
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 234


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 192/358 (53%), Gaps = 14/358 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R       +GF  ++       +VY +N L++  CK G    A+  FDE   +G
Sbjct: 233 LIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKG 292

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V++ +LI+G+C      + F++ + M   G+ P+ YT++A+I+GLC+ N + +A 
Sbjct: 293 LTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAI 352

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM ER + P++V +  +I+GHC++G I       EA  ++DEM   G  PD  TY 
Sbjct: 353 RLFGEMKERKIMPSEVTYNVMIEGHCRSGNIS------EAFHLLDEMVGKGFVPDTYTYR 406

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C  G +  A +   ++ K   +L+N+ ++AL+ G+C+ G+  +A    R M++ 
Sbjct: 407 PLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVER 466

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+  D   Y ++ID   +  DT+  F LLKEM + G  P    Y  +++   K G LK A
Sbjct: 467 GVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEA 526

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD-------YACY 450
             L D M+D G +P+ +TY  L+ G CK G   D  +L S++ LVSD       Y C+
Sbjct: 527 FGLWDIMVDEGCLPNVVTYTALINGLCKAG-LMDKAELLSKETLVSDVTPNHITYGCF 583



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 193/414 (46%), Gaps = 41/414 (9%)

Query: 83  RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
           RL++        R    L++ ++R       L  + +I+     P +Y+++ ++  LC+ 
Sbjct: 85  RLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCEL 144

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
                A+ +           + V +N LI+G CK++ + E   +K+ +   G+  +V TY
Sbjct: 145 KDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY 204

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------- 253
                      + ++AELL  EM E+GL  N + ++ LID  C+ G +D A         
Sbjct: 205 YG---------KFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTK 255

Query: 254 --------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
                               G+   A+   DEM   GL P  +TYT L+ G+C EG+   
Sbjct: 256 ASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHK 315

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  EM  +GI  +   FTA+ISG CR   + EA R+  EM +  + P + TY ++I+
Sbjct: 316 AFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIE 375

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C++G+    F LL EM   G +P   TY  L++GLC  G++  A   +D +       
Sbjct: 376 GHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKL 435

Query: 414 DDITYNILLEGHCKHGNPEDFD---KLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           +++ Y+ L+ G+CK G  +D     ++  E+G+  D  CY  L+  +++    R
Sbjct: 436 NNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTR 489



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 181/405 (44%), Gaps = 80/405 (19%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+   G SP+ Y F  ++  LC+   + +A  +F E  +R +  + V++N +I GHC+
Sbjct: 320 YNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCR 379

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTY---------------------------------- 202
           + N+ E F L   M G G  PD YTY                                  
Sbjct: 380 SGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMC 439

Query: 203 -SALINGLCKENRLDDAEL-----------------------------------LLHEMC 226
            SAL++G CKE R  DA                                     LL EM 
Sbjct: 440 YSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMH 499

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
             GL P+ VI+T +ID H K      AG++KEA  + D M   G  P+ +TYT L++G C
Sbjct: 500 NHGLRPDAVIYTNMIDRHSK------AGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLC 553

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K G ++ A  + KE +   +  +++ +   +    RGG + +A ++   MLK G      
Sbjct: 554 KAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-GFLATTV 612

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           +Y ++I  FC+ G  +   +LL  M  +  LP   TY+ ++   CK   L+ A  L  TM
Sbjct: 613 SYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTM 672

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
           LD G+ PD + Y+ L+ G C  G  E   +L+ E   +G+ S++ 
Sbjct: 673 LDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHV 717



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 64/362 (17%)

Query: 158 RGLHATAVSFN-TLINGHCKAKNLDEGFRLKSV-----MEGSGMRPDVYTYSALINGLCK 211
           RG  +  ++FN   I+ + K  ++D+   + S+     M+   + P+V T SAL+NGL +
Sbjct: 49  RGKQSWRIAFNDPFISRNLKPSHVDKVLMMLSLNDSRLMKDCNLMPEVRTLSALLNGLLR 108

Query: 212 ENRLDDAELLLHEMCERGLTPN-----------------------------------DVI 236
             R +D  LL  ++    + P+                                    V+
Sbjct: 109 FRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVV 168

Query: 237 FTTLIDGHCKNGRIDMA--------------------GDMKEARKIVDEMCTNGLNPDKI 276
           +  LI G CK+ RI  A                    G   EA  +  EM   GL  + I
Sbjct: 169 YNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHI 228

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY+IL+D FC+ G++++A+    +M K  IE     + +LI+G+C+ G    A+    EM
Sbjct: 229 TYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEM 288

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +  GL P   TYT +I  +C  G+    F++  EM + G  P   T+ A+++GLC+   +
Sbjct: 289 IDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMM 348

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A  L   M +  ++P ++TYN+++EGHC+ GN  +   L  E   KG V D   Y  L
Sbjct: 349 AEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPL 408

Query: 454 VS 455
           +S
Sbjct: 409 IS 410



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C +D + R       +  +  +L  G+  +   +N+L+   C+ GKI++A  +       
Sbjct: 582 CFLDHLTRGGNMEKAVQLHHAMLK-GFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDN 640

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +    ++++T+I   CK  NL E  +L   M   G++PD   YS L++G C    L+ A
Sbjct: 641 DILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKA 700

Query: 219 ELLLHEMCERGLTPNDV 235
             L  EM  RG+  N V
Sbjct: 701 FELRDEMIRRGMRSNHV 717


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 175/335 (52%), Gaps = 29/335 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P VY +N +++ LCK G+   A  +  +  + G     V+++TLI+  C+ + ++E 
Sbjct: 193 GCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEA 252

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + S M+  G+ PD++TY++LI GLCK +R  +A  LL+EM    + P+ V F  L+D 
Sbjct: 253 LDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDT 312

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            CK G++  A                              D+ EARK+   M T G  P+
Sbjct: 313 FCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPN 372

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             +Y IL++G+CK   ++ A+ +  EMI +G+  +NV++  LI GFC+ GK+ EA+ + R
Sbjct: 373 IFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFR 432

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M   G  PD  TY++++D FCK G     FRL + M+S    P +  Y  L++ +CK G
Sbjct: 433 NMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSG 492

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             K+A  L   +   G+ P    Y  ++ G CK G
Sbjct: 493 NHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEG 527



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 174/335 (51%), Gaps = 29/335 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP++Y  ++ M+  C+  ++     V  +  K GL  T V+F TLING CK     + 
Sbjct: 123 GLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQA 182

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G +PDVYTY+ +INGLCK      A  LL +M E G  PN V ++TLID 
Sbjct: 183 VELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDS 242

Query: 244 HCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNGLNPD 274
            C++  ++ A D+                             KEA  +++EM +  + PD
Sbjct: 243 LCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPD 302

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +T+ +L+D FCKEG +  AL + K M + G+E + V +++L+ G+     VVEA ++  
Sbjct: 303 IVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFH 362

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M+  G KP+  +Y ++I+ +CK        +L  EM   G  P   +YN L++G C+ G
Sbjct: 363 VMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLG 422

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +L+ A  L   M   G +PD  TY+ILL+G CK G
Sbjct: 423 KLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQG 457



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 7/282 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-AKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           I DA   F+    R      + F  L++   K  +  D    L   ME  G+ P++YT S
Sbjct: 73  IDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLS 132

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
             +N  C+  R+D    +L ++ + GL P  V FTTLI+G CK       G+  +A ++ 
Sbjct: 133 IFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCK------VGEFAQAVELF 186

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D+M   G  PD  TY  +++G CK G+  +A  + K+M + G + + V ++ LI   CR 
Sbjct: 187 DDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRD 246

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
             V EA  +   M   G+ PD  TYT +I   CK    K    LL EM S   +P + T+
Sbjct: 247 RLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTF 306

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           N L++  CK G++  A  +L TM ++GV P+ +TY+ L+ G+
Sbjct: 307 NVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 149/287 (51%), Gaps = 10/287 (3%)

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVI 236
           +N+D+     + M      P +  ++ L++ + K  +  D  + L +  E  GL+PN   
Sbjct: 71  RNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYT 130

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            +  ++  C+  R+D+         ++ ++   GL P  +T+T L++G CK G+   A++
Sbjct: 131 LSIFMNCFCQLQRVDLG------FSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVE 184

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +M+ +G + D   +  +I+G C+ G+   A  +L++M + G +P+  TY+ +ID  C
Sbjct: 185 LFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLC 244

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           ++        +   M++ G  P + TY +L+ GLCK  + K A+ LL+ M  L ++PD +
Sbjct: 245 RDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIV 304

Query: 417 TYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSKY 460
           T+N+L++  CK G   +     K  +E G+  +   Y+SL+   S +
Sbjct: 305 TFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLW 351


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 218/451 (48%), Gaps = 15/451 (3%)

Query: 10  YSTMVHFLVAHKMHSQARDLLH---LIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           Y  ++H L   K   QA   L    L+V          LF   L  +  +   ++ D L+
Sbjct: 133 YCLILHVLAWSKEFEQAMKFLTELILLVKDTDEDVFQCLF---LCCQDCNWDPIIFDLLL 189

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             YV  G + +  + F  + +  +      C  L++ ++++N   +    Y E+   G  
Sbjct: 190 KAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWHVYGEMGRVGVI 249

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ Y FN+L H  CK+G I       ++  + G     V++NTLING+C    L + F L
Sbjct: 250 PNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYL 309

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M    + PD+ +Y+AL+NGLCKE R+ +A  LLH M  RGL P+ V + TLI G+CK
Sbjct: 310 YRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCK 369

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+      M E++ ++ EM  NG+ PD  T  +L+ G+ KEG L SAL++  E+ K G+
Sbjct: 370 EGK------MLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGV 423

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            +    +  L++  C   +   A+ +L  M + G  P    Y  +I+  CK         
Sbjct: 424 SISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALS 483

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  E+      P + TY AL+  LC+ G+   A  L++ ML  G+ PD      ++ G+C
Sbjct: 484 LKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYC 543

Query: 427 KH---GNPEDFDKLQSEKGLVSDYACYTSLV 454
           +    G  E    L +++  + D   Y++LV
Sbjct: 544 REKDAGKAESLLVLFAKEFQIFDSESYSTLV 574



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 122/296 (41%), Gaps = 64/296 (21%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  +  LM+ LCKEG++++A  +      RGL+   VS+NTLI G+CK   + E   L
Sbjct: 320 PDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSL 379

Query: 187 KSVMEGSGMRPDVYTYSALING-----------------------------------LCK 211
              M G+G+ PD +T   LI G                                   LC+
Sbjct: 380 LYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCE 439

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK-------------- 257
           E+R   A+ LL  M +RG  P+  I+  LI+  CK   +  A  +K              
Sbjct: 440 EDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLT 499

Query: 258 ---------------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
                          EA K+++EM   GL PD      ++ G+C+E D   A  +     
Sbjct: 500 YKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFA 559

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K     D+ +++ L+   C  G V +   +   MLKVG  P+  T   +ID   KN
Sbjct: 560 KEFQIFDSESYSTLVRIVCEDGDVAKFMELQERMLKVGFAPNSLTCKYMIDGLRKN 615



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 112/238 (47%), Gaps = 6/238 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           CR LI    +       L   +E+  +G S S  +++ L+  LC+E +   A+ + +   
Sbjct: 395 CRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMS 454

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +RG       +N LI   CK   + +   LK+ +    + P++ TY ALI  LC+  R  
Sbjct: 455 QRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSI 514

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +AE L+ EM   GL P+  I   +I G+C+        D  +A  ++          D  
Sbjct: 515 EAEKLMEEMLHFGLQPDPEICRAMIHGYCREK------DAGKAESLLVLFAKEFQIFDSE 568

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           +Y+ L+   C++GD+   +++++ M+K G   +++    +I G  +   +V+ + +L 
Sbjct: 569 SYSTLVRIVCEDGDVAKFMELQERMLKVGFAPNSLTCKYMIDGLRKNVGLVKEKLILE 626



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 55/240 (22%)

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIK-----------------RGIELDNVA 312
           GL P  + Y ++L       + E A+    E+I                  +    D + 
Sbjct: 125 GLKPSTLNYCLILHVLAWSKEFEQAMKFLTELILLVKDTDEDVFQCLFLCCQDCNWDPII 184

Query: 313 FTALISGFCRGGKVVEAERMLREML----------------------------------- 337
           F  L+  + + G + E  R   ++L                                   
Sbjct: 185 FDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWHVYGEMG 244

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           +VG+ P+  T+ ++   FCK+GD       L++M  +G  P + TYN L+NG C  G+L 
Sbjct: 245 RVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLS 304

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +A  L   M    V+PD ++Y  L+ G CK G   +  +L      +GL  D   Y +L+
Sbjct: 305 DAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLI 364


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 214/453 (47%), Gaps = 68/453 (15%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  +  ++ A +    ++K      A  C  +++ +      T     + E++ +G  P+
Sbjct: 417 YYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPN 476

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           + ++  ++  L KEG+ ++A  +      +GL      +NT+I G CKA  ++EG     
Sbjct: 477 IVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLV 536

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G++P+VYTY A I+G C+   +  AE    EM + G+ PNDVI T LIDG+CK+G
Sbjct: 537 EMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDG 596

Query: 249 RIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYT 279
               A                             G ++EA  +  E+   GL PD  TYT
Sbjct: 597 NTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYT 656

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV------------ 327
            L+   CKEGDL++A ++  +M K+GI  + V + ALI+G C+ G++             
Sbjct: 657 SLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEK 716

Query: 328 -----------------------EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                                  EA ++   M  VG+ PD   Y  +ID  CK G+T+  
Sbjct: 717 GLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKA 776

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L   M  +G + +   +NAL++G  K G+L  A  L++ M+D  + P+ +TY IL+E 
Sbjct: 777 LSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEY 835

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           HC  GN ++ ++L  E   + ++ +   YTSL+
Sbjct: 836 HCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLL 868



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 181/331 (54%), Gaps = 9/331 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           + + +  L+H LCK G ++ A+ +F E    G+     ++N LI G+ K +N+++ + L 
Sbjct: 371 NTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELL 430

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             ++   +  + Y   A++NGLC    L  A  L  EM   GL PN VI+TT++ G  K 
Sbjct: 431 IEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKE 490

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR +      EA KI+  M   GL+PD   Y  ++ GFCK G +E       EMI +G++
Sbjct: 491 GRFE------EAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLK 544

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            +   + A I G+CR G++  AER   EML  G+ P+D   T +ID +CK+G+T   F  
Sbjct: 545 PNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAK 604

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            + M   G LP V+T++ L++GL K+G+L+ A  +   +LD G+VPD  TY  L+   CK
Sbjct: 605 FRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCK 664

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            G+ +   +L  +   KG+  +   Y +L++
Sbjct: 665 EGDLKAAFELHDDMCKKGINPNIVTYNALIN 695



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 181/334 (54%), Gaps = 7/334 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  LID   +    T     +  +LD G  P V   +VL+H L K GK+++A  VF E  
Sbjct: 585 CTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELL 644

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            +GL     ++ +LI+  CK  +L   F L   M   G+ P++ TY+ALINGLCK   + 
Sbjct: 645 DKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIA 704

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L   + E+GL  N V ++T+I G+CK+  +  A  +    K+V      G+ PD  
Sbjct: 705 KARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLV------GVPPDSF 758

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  L+DG CK G+ E AL +   M++ GI     AF ALI GF + GK++EA +++ +M
Sbjct: 759 VYCALIDGCCKAGNTEKALSLFLGMVEEGIA-STPAFNALIDGFFKLGKLIEAYQLVEDM 817

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +   + P+  TYT++I+  C  G+ K   +L  EM+    +P V TY +L++G  + G+ 
Sbjct: 818 VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRR 877

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
                L D M+  G+ PDD+ ++++++ H K GN
Sbjct: 878 SEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGN 911



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 183/359 (50%), Gaps = 9/359 (2%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLI+   +           +EI     + + Y+   +++ LC  G +  A  +F E    
Sbjct: 412 CLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISW 471

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL    V + T++ G  K    +E  ++  VM+  G+ PDV+ Y+ +I G CK  ++++ 
Sbjct: 472 GLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEG 531

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           +  L EM  +GL PN   +   I G+C+      AG+M+ A +   EM  +G+ P+ +  
Sbjct: 532 KSYLVEMIAKGLKPNVYTYGAFIHGYCR------AGEMQAAERSFIEMLDSGIAPNDVIC 585

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T L+DG+CK+G+   A    + M+ +G+  D    + LI G  + GK+ EA  +  E+L 
Sbjct: 586 TDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLD 645

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            GL PD  TYT +I   CK GD K  F L  +M   G  P + TYNAL+NGLCK G++  
Sbjct: 646 KGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAK 705

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGN-PEDFDKLQSEK--GLVSDYACYTSLV 454
           A  L D + + G+  + +TY+ ++ G+CK  N  E F      K  G+  D   Y +L+
Sbjct: 706 ARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALI 764



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 218/456 (47%), Gaps = 34/456 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGM-GSSASLFASILETRGTHLPGLVLDAL 65
           LH +   V+       +     +L LI+   G+ G++A++   +++TR  H+        
Sbjct: 90  LHGFFNWVNSRTVFSQNLSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVK------- 142

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
                    LD  I+C++ +              LID   +       +  +L      +
Sbjct: 143 --------ILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEF 194

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV----SFNTLINGHCKAKNLD 181
              +   N L   L K  +++    V+     +G+    V    ++  LIN +C+   ++
Sbjct: 195 IVGLACCNSLSKDLLKGNRVELFWKVY-----KGMLGAIVPDVYTYTNLINAYCRVGKVE 249

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EG  +   ME  G  P++ TYS +I GLC+   +D+A  L   M  +GL P++ I+ TLI
Sbjct: 250 EGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLI 309

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           DG C+  R        E + ++DEM T GL PD + YT L++GF K+ D+  A  +++EM
Sbjct: 310 DGFCRQKR------STEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEM 363

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             R I+L+   + ALI G C+ G + +AE +  EM  +G+KPD  TY  +I+ + K  + 
Sbjct: 364 FARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNM 423

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +  + LL E++ +          A++NGLC  G L  AN L   M+  G+ P+ + Y  +
Sbjct: 424 EKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTI 483

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           ++G  K G  E+  K+     ++GL  D  CY +++
Sbjct: 484 VKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVI 519



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 161/287 (56%), Gaps = 7/287 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P++  +N L++ LCK G+I  A+ +FD   ++GL   +V+++T+I G+CK+ NL E 
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+L   M+  G+ PD + Y ALI+G CK    + A  L   M E G+      F  LIDG
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPA-FNALIDG 800

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA ++V++M  N + P+ +TYTIL++  C  G+++ A  +  EM K
Sbjct: 801 FFKLGK------LIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQK 854

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R +  + + +T+L+ G+ R G+  E   +  EM+  G+KPDD  +++++D   K G+   
Sbjct: 855 RNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIK 914

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
             +L+ +M S+G       Y  L++ LCKH  L     +LD +   G
Sbjct: 915 ALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQG 961



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 7/239 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       L  +L +++ G + S   FN L+    K GK+ +A  + ++     
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGIA-STPAFNALIDGFFKLGKLIEAYQLVEDMVDNH 821

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++  LI  HC   N+ E  +L   M+   + P+V TY++L++G  +  R  +  
Sbjct: 822 ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMF 881

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  RG+ P+D+ ++ ++D H K G      +  +A K+VD+M + G+N  K  YT
Sbjct: 882 SLFDEMVARGIKPDDLAWSVMVDAHLKEG------NWIKALKLVDDMLSEGVNVCKNLYT 935

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           IL+D  CK  +L   L +  E+ K+G +L       L+  F R G+  EA R+L  M++
Sbjct: 936 ILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR 994


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 227/443 (51%), Gaps = 15/443 (3%)

Query: 18  VAHKMHSQARDLLHLIVSKKGMGSSA-SLFASILETRGTHLPGLV-LDALMIVYVDLGFL 75
           V+ ++  +  DLL  + SKK M     S+F  ++++R +  P +   + ++ +  D   +
Sbjct: 158 VSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS--PDVKNCNRILRILRDKDLM 215

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
             A++ +R + +   +        L+D   +       L    E+   G +P+   +NVL
Sbjct: 216 SKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVL 275

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++ L K+G+ + A+ +  E  K GL  +A ++N LI G+     L E   L+  M   G 
Sbjct: 276 INGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA 335

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            P V TY++ I GLCK  R+ DA   L +M    L P+ V + TLI G+C+       G+
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR------LGN 389

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           + +A  + DE+ +  L P  +TY  LLDG C++G+LE A  ++ EMI  GI  D V +T 
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++G C+ G +  A+    EML  GL+ D   Y   I    K GDT   F L +EM + G
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 509

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----P 431
             P +  YN +++GLCK G L+ A+ LL  M+  GV+PD +TY  ++  H ++G      
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGR 569

Query: 432 EDFDKLQSEKGLVSDYACYTSLV 454
           E F ++ S KGL      YT L+
Sbjct: 570 EIFYEMLS-KGLTPSVVTYTVLI 591



 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 188/373 (50%), Gaps = 32/373 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G SP+V  +N  ++ LCK G++ DA     +     L    VS+NTLI G+C+  
Sbjct: 329 EMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLG 388

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL + F L   +    + P + TY+ L++GLC++  L+ A+ L  EM   G+ P+ V +T
Sbjct: 389 NLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYT 448

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            L++G CK G + MA                             GD   A  + +EM   
Sbjct: 449 ILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD I Y +++DG CK G+LE A ++ ++M+  G+  D V +T++I      G++ + 
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  EML  GL P   TYT++I      G  +  F    EM+  G LP V TYN+L+NG
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LCK  ++  A      M++ G+ P+  +Y IL+  +C  GN ++   L  +   +G+  D
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 447 YACYTSLVSKSSK 459
              +++L+ +  K
Sbjct: 689 SCTHSALLKQLGK 701



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 180/353 (50%), Gaps = 10/353 (2%)

Query: 57  LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +V  + L+  Y  LG L  A   F  LR  Y          L+D + R     V   
Sbjct: 371 LPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQ 430

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
             +E+++ G +P +  + +L++  CK G +  AQ  FDE    GL   + ++ T I G  
Sbjct: 431 LKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGEL 490

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  +    F L+  M   G  PD+  Y+ +++GLCK   L++A  LL +M   G+ P+ V
Sbjct: 491 KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYV 550

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T++I  H +NGR      +++ R+I  EM + GL P  +TYT+L+ G   +G LE A 
Sbjct: 551 TYTSIIHAHLENGR------LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAF 604

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
               EM ++GI  + + + +LI+G C+  ++ +A     EM++ G+ P+  +YT++I+  
Sbjct: 605 IYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINEN 664

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL---CKHGQLKNANMLLDT 405
           C  G+ +    L K+M   G  P   T++AL+  L   CK   ++    LLD+
Sbjct: 665 CNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQLESLLDS 717


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 227/443 (51%), Gaps = 15/443 (3%)

Query: 18  VAHKMHSQARDLLHLIVSKKGMGSSA-SLFASILETRGTHLPGLV-LDALMIVYVDLGFL 75
           V+ ++  +  DLL  + SKK M     S+F  ++++R +  P +   + ++ +  D   +
Sbjct: 158 VSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS--PDVKNCNRILRILRDKDLM 215

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
             A++ +R + +   +        L+D   +       L    E+   G +P+   +NVL
Sbjct: 216 SKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVL 275

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++ L K+G+ + A+ +  E  K GL  +A ++N LI G+     L E   L+  M   G 
Sbjct: 276 INGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA 335

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            P V TY++ I GLCK  R+ DA   L +M    L P+ V + TLI G+C+       G+
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR------LGN 389

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           + +A  + DE+ +  L P  +TY  LLDG C++G+LE A  ++ EMI  GI  D V +T 
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++G C+ G +  A+    EML  GL+ D   Y   I    K GDT   F L +EM + G
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 509

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----P 431
             P +  YN +++GLCK G L+ A+ LL  M+  GV+PD +TY  ++  H ++G      
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGR 569

Query: 432 EDFDKLQSEKGLVSDYACYTSLV 454
           E F ++ S KGL      YT L+
Sbjct: 570 EIFYEMLS-KGLTPSVVTYTVLI 591



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 188/373 (50%), Gaps = 32/373 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G SP+V  +N  ++ LCK G++ DA     +     L    VS+NTLI G+C+  
Sbjct: 329 EMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLG 388

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL + F L   +    + P + TY+ L++GLC++  L+ A+ L  EM   G+ P+ V +T
Sbjct: 389 NLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYT 448

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            L++G CK G + MA                             GD   A  + +EM   
Sbjct: 449 ILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD I Y +++DG CK G+LE A ++ ++M+  G+  D V +T++I      G++ + 
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  EML  GL P   TYT++I      G  +  F    EM+  G LP V TYN+L+NG
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LCK  ++  A      M++ G+ P+  +Y IL+  +C  GN ++   L  +   +G+  D
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 447 YACYTSLVSKSSK 459
              +++L+ +  K
Sbjct: 689 SCTHSALLKQLGK 701



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 176/342 (51%), Gaps = 7/342 (2%)

Query: 57  LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +V  + L+  Y  LG L  A   F  LR  Y          L+D + R     V   
Sbjct: 371 LPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQ 430

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
             +E+++ G +P +  + +L++  CK G +  AQ  FDE    GL   + ++ T I G  
Sbjct: 431 LKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGEL 490

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  +    F L+  M   G  PD+  Y+ +++GLCK   L++A  LL +M   G+ P+ V
Sbjct: 491 KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYV 550

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T++I  H +NGR      +++ R+I  EM + GL P  +TYT+L+ G   +G LE A 
Sbjct: 551 TYTSIIHAHLENGR------LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAF 604

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
               EM ++GI  + + + +LI+G C+  ++ +A     EM++ G+ P+  +YT++I+  
Sbjct: 605 IYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINEN 664

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           C  G+ +    L K+M   G  P   T++AL+  L K  +L+
Sbjct: 665 CNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQ 706



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P    +  ++H   + G+++  + +F E   +GL  + V++  LI+GH     L+  
Sbjct: 544 GVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERA 603

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F   S M+  G+ P+V TY++LINGLCK  R+D A     EM E+G+ PN   +T LI+ 
Sbjct: 604 FIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINE 663

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           +C        G+ +EA  +  +M   G+ PD  T++ LL    K+  L++ 
Sbjct: 664 NCN------MGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAV 708


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 224/457 (49%), Gaps = 28/457 (6%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYV-------DLGFLD 76
           + A      +  + G   +A+  A++L+           D L++  V       D+    
Sbjct: 69  ATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREAV 128

Query: 77  DAIQCFRL----LRKHYF---RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILD 122
           DAIQ  R     LRK  +    +P  GCR        LI  +  T      L   + ++ 
Sbjct: 129 DAIQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQ 188

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G S +++ + +L+  LCKEG+I  A+ V +E   RG+  +  ++N +I+G+CK+  + +
Sbjct: 189 DGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 248

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              +K++ME +G  PD +TY+ LI GLC E + D+AE LL++   RG TP  + FT +I+
Sbjct: 249 ALGIKALMERNGCNPDDWTYNILIYGLCGE-KPDEAEELLNDAIVRGFTPTVITFTNIIN 307

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+CK  RID      +A ++   M ++    D   Y +L++   K+   + A +   EM 
Sbjct: 308 GYCKAERID------DALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMF 361

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G+  + V +T++I G+C+ GKV  A  + R M   G +P+  TY+ +I    ++    
Sbjct: 362 ANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLH 421

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L+ +M+ DG  P V TY  L+ G CK  +  NA  L + M   G+ PD+  YN+L 
Sbjct: 422 KAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLT 481

Query: 423 EGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
              CK G  E+       KG+V     YTSLV   SK
Sbjct: 482 HALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSK 518



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 191/420 (45%), Gaps = 61/420 (14%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           +L L AY  +++ L+      +A++ +  + +  G+  +  ++ SI++            
Sbjct: 331 KLDLQAYGVLINVLIKKCRFKEAKETVSEMFAN-GLAPNVVIYTSIIDG----------- 378

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
                Y  +G +  A++ FRL+          GCR                         
Sbjct: 379 -----YCKVGKVGAALEVFRLMEHE-------GCR------------------------- 401

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
              P+ + ++ L++ L ++ K+  A  +  +  + G+    +++ TLI G CK    D  
Sbjct: 402 ---PNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNA 458

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +ME +G+ PD   Y+ L + LCK  R ++A   L     +G+    V +T+L+DG
Sbjct: 459 FRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDG 515

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G  D A        ++++M   G   D  TY++LL   CK+  L  AL I  +M  
Sbjct: 516 FSKAGNTDFAA------VLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTL 569

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + VA+T +IS   + GK   A+ M  EM+  G KP   TYT+ I  +CK G  + 
Sbjct: 570 SGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEE 629

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM  DG  P V TYN  +NG    G +  A   L  M+D    P+  TY ILL+
Sbjct: 630 AEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLK 689



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 162/327 (49%), Gaps = 12/327 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           + VL++ L K+ + K+A+    E    GL    V + ++I+G+CK   +     +  +ME
Sbjct: 337 YGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLME 396

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G RP+ +TYS+LI GL ++ +L  A  L+ +M E G+TP  + +TTLI G CK    D
Sbjct: 397 HEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFD 456

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                  A ++ + M  NGL PD+  Y +L    CK G  E A      ++++G+ L  V
Sbjct: 457 ------NAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSF---LVRKGVVLTKV 507

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T+L+ GF + G    A  ++ +M+  G K D  TY++++   CK         +L +M
Sbjct: 508 TYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQM 567

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G    +  Y  +++ + K G+  +A  + + M+  G  P   TY + +  +CK G  
Sbjct: 568 TLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQI 627

Query: 432 EDFDKLQSE---KGLVSDYACYTSLVS 455
           E+ + L  E    G+  D   Y   ++
Sbjct: 628 EEAEHLIGEMERDGVAPDVVTYNVFIN 654



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 158/367 (43%), Gaps = 63/367 (17%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P    +NVL H LCK G+ ++A   +    ++G+  T V++ +L++G  KA N D  
Sbjct: 469 GLTPDEQAYNVLTHALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFA 525

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G + D YTYS L+  LCK+ +L++A  +L +M   G+  N V +T +I  
Sbjct: 526 AVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISE 585

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+ D       A+ + +EM ++G  P   TYT+ +  +CK G +E A  +  EM +
Sbjct: 586 MIKEGKHD------HAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMER 639

Query: 304 RGIELDNVAFTALISG----------FCRGGKVVEAE----------------------- 330
            G+  D V +   I+G          F    ++++A                        
Sbjct: 640 DGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDA 699

Query: 331 ------------------RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
                             ++L  M+K GL P   TY+ +I  FCK    +    L   MR
Sbjct: 700 HYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMR 759

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
                P  E Y  L+   C       A   +  M++ G  P   +Y+ L+ G C  G   
Sbjct: 760 GKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEG--- 816

Query: 433 DFDKLQS 439
           D+DK +S
Sbjct: 817 DYDKAKS 823



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 159/338 (47%), Gaps = 23/338 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G     Y ++VL+  LCK+ K+ +A  + D+    G+    V++  +I+   K  
Sbjct: 531 KMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEG 590

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D    + + M  SG +P   TY+  I+  CK  ++++AE L+ EM   G+ P+ V + 
Sbjct: 591 KHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYN 650

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG--------- 289
             I+G    G +D A      ++++D  C     P+  TY ILL  F K           
Sbjct: 651 VFINGCGHMGYMDRA--FSTLKRMIDASC----EPNYWTYWILLKHFLKMSLVDAHYVDT 704

Query: 290 -------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
                  +L++   + + M+K G+    V ++++I+GFC+  ++ EA  +   M    + 
Sbjct: 705 SGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDIS 764

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P++  YTM+I C C           + +M   G  P +E+Y+ L+ GLC  G    A  L
Sbjct: 765 PNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSL 824

Query: 403 LDTMLDL-GVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
              +L +     +++ + IL +G  K G+ +   +L S
Sbjct: 825 FCDLLGMEDYNHNEVAWKILNDGLLKAGHVDFCSQLLS 862



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 23/289 (7%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ PS   + V +   CK G+I++A+ +  E  + G+    V++N  ING     
Sbjct: 601 EMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMG 660

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALI----------------NGLCKENRLDDAELLL 222
            +D  F     M  +   P+ +TY  L+                +G+     LD    LL
Sbjct: 661 YMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLL 720

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
             M + GL P  V ++++I G CK  R++      EA  + D M    ++P++  YT+L+
Sbjct: 721 ERMVKHGLNPTAVTYSSIIAGFCKATRLE------EACVLFDHMRGKDISPNEEIYTMLI 774

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-GL 341
              C       A+    +MI+ G +    ++  LI G C  G   +A+ +  ++L +   
Sbjct: 775 KCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDY 834

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             ++  + ++ D   K G      +LL  M +       ETY+ + + +
Sbjct: 835 NHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMVTDNI 883


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 175/309 (56%), Gaps = 6/309 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  + +L+ + CKEG++++A+ V DE   +GL   AV +N LI+  CK + + + 
Sbjct: 44  GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 103

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G +PD++T+++LI GLCK N+ ++A  L  +M   G+  N + + TLI  
Sbjct: 104 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 163

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G       M+EA K+V++M   G   D ITY  L+   C+ G++E  L + ++M+ 
Sbjct: 164 FLRRGA------MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 217

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  +N++   LI+G CR G +  A   LR+M+  GL PD  TY  +I+  CK G  + 
Sbjct: 218 KGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQE 277

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +++ +G  P   TYN L++  CK G   +A++LL   +D G +P+++T+ IL+ 
Sbjct: 278 ALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVS 337

Query: 424 GHCKHGNPE 432
              K G+ E
Sbjct: 338 NFIKEGDQE 346



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 178/343 (51%), Gaps = 9/343 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G  P ++ +N L+  LCK+G +  A+ + +E   +G     +++  LI+  CK   
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+E   +   M G G+  +   Y+ LI+ LCK+ ++ DA  +  +M  +G  P+   F +
Sbjct: 65  LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 124

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G CK  + +      EA  +  +M   G+  + ITY  L+  F + G ++ AL +  
Sbjct: 125 LIFGLCKVNKFE------EALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 178

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M+ RG  LD++ +  LI   CR G + +   +  +M+  GL P++ +  ++I+  C+ G
Sbjct: 179 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 238

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           + +     L++M   G  P + TYN+L+NGLCK G+ + A  L D +   G+ PD ITYN
Sbjct: 239 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYN 298

Query: 420 ILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
            L+  HCK G  +D   L S   + G + +   +  LVS   K
Sbjct: 299 TLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 341



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 6/333 (1%)

Query: 30  LHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89
           L L + KKG   SA    + ++ +G     +    L+  +   G L++A      +    
Sbjct: 20  LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 79

Query: 90  FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
             + A G  CLI  + +       L  + ++   G  P ++ FN L+  LCK  K ++A 
Sbjct: 80  LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 139

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            ++ +    G+ A  +++NTLI+   +   + E  +L + M   G   D  TY+ LI  L
Sbjct: 140 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 199

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C+   ++    L  +M  +GL PN++    LI+G C+ G I      + A + + +M   
Sbjct: 200 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI------QHALEFLRDMIHR 253

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD +TY  L++G CK G  + AL++  ++   GI  D + +  LIS  C+ G   +A
Sbjct: 254 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 313

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             +L   +  G  P++ T+ +++  F K GD +
Sbjct: 314 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 100/194 (51%), Gaps = 3/194 (1%)

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           + M + G  PD  TY  L+ G CK+G L SA ++  EM  +G E + + +T LI  FC+ 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G++ EA  +L EM   GL  +   Y  +I   CK+   +    +  +M S G  P + T+
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           N+L+ GLCK  + + A  L   ML  GV+ + ITYN L+    + G  ++  KL ++   
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182

Query: 441 KGLVSDYACYTSLV 454
           +G   D   Y  L+
Sbjct: 183 RGCPLDDITYNGLI 196



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + + M+  G   D   +  LI G C+ G +V A  ++ EM   G +P+  TYT++ID FC
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G  +    +L EM   G       YN L++ LCK  ++++A  +   M   G  PD  
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           T+N L+ G CK    E+   L  +   +G++++   Y +L+
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 161


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 228/458 (49%), Gaps = 14/458 (3%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRGT-HLPGLVLDAL 65
           H   T  H LV  +M++ A+  L HL+    G+ S   +F +++ET    +    V D L
Sbjct: 55  HIICTTTHILVRARMYNFAKTTLKHLLQLPIGLNS---VFGALMETYPICNSNPAVFDLL 111

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           + V +    + DA+Q F L+           C  ++  +++     +   F+  +L  G 
Sbjct: 112 IRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGI 171

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P V  FN+L++ LC+ GK K+A  +  +  + G++ TAV++NTL+N +CK        +
Sbjct: 172 CPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQ 231

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   G+  DV TY+  I+ LC+++R     LLL  M    + PN++ + TLI G  
Sbjct: 232 LIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFV 291

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G+I++      A K+ DEM    L P+ ITY  L+ G C  G++  AL +   M+  G
Sbjct: 292 REGKIEV------ATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHG 345

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V + AL++G  +  +      +L  M   G++    +YT +ID  CKNG  +   
Sbjct: 346 LRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAV 405

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +LL +M      P V T++ L+NG  + G++ NA  ++  M   G+VP+ I Y+ L+  +
Sbjct: 406 QLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNY 465

Query: 426 CKHG---NPEDFDKLQSEKGLVSDYACYTSLVSKSSKY 460
           CK G      +   + +  G V+D+     LV+   +Y
Sbjct: 466 CKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRY 503



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 180/367 (49%), Gaps = 44/367 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +N L+    +EGKI+ A  VFDE     L   ++++NTLI GHC   N+ E  RL
Sbjct: 278 PNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRL 337

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             VM   G+RP+  TY AL+NGL K         +L  M   G+  + + +T +IDG CK
Sbjct: 338 MDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCK 397

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NG ++      EA +++D+M    +NPD +T+++L++GF + G + +A +I  +M K G+
Sbjct: 398 NGMLE------EAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGL 451

Query: 307 ELDNVAFTALI-----------------------------------SGFCRGGKVVEAER 331
             + + ++ LI                                   + FCR GK+ EAE 
Sbjct: 452 VPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEY 511

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            +  M ++GL P+  T+  +I+ +  +GD    F +  +M S GH P++ TY  L+ GLC
Sbjct: 512 FMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLC 571

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
             G +  A      +  +    D++ +N  L   C+ GN  D   L +E      + D  
Sbjct: 572 IGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNF 631

Query: 449 CYTSLVS 455
            YT+L++
Sbjct: 632 TYTNLIA 638



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 166/355 (46%), Gaps = 42/355 (11%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            +G+ PS++ +  L+  LC  G I +A   F            V FNT +   C++ NL 
Sbjct: 553 SFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLS 612

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL-TPNDVIFTTL 240
           +   L + M  +   PD +TY+ LI GLCK+ ++  A LL  +  E+GL +PN  ++T+L
Sbjct: 613 DAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSL 672

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI------------------------ 276
           +DG  K+G        + A  I +EM    + PD +                        
Sbjct: 673 VDGLLKHGH------ARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILST 726

Query: 277 -----------TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
                      TY ILL G+ K   +     + K+MI+ G   D  ++ +LI G+C+   
Sbjct: 727 MKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKS 786

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
              A ++LR +   G   D  T+ M+I  FC+  + K  F L+K+M     +P V+TYNA
Sbjct: 787 FDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNA 846

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           L NGL +      A+ +L  +L+ G VP +  Y  L+ G C+ GN +   KLQ E
Sbjct: 847 LFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDE 901



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 160/340 (47%), Gaps = 30/340 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++ +G  P+   +  L++ L K  +      + +     G+  + +S+  +I+G CK   
Sbjct: 341 MVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGM 400

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+E  +L   M    + PDV T+S LING  +  ++++A+ ++ +M + GL PN ++++T
Sbjct: 401 LEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYST 460

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LI  +CK G +  A                             G ++EA   ++ M   G
Sbjct: 461 LIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMG 520

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L+P+ +T+  +++G+   GD   A  +  +M   G       +  L+ G C GG + EA 
Sbjct: 521 LDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEAL 580

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +    +  +    D+  +   +   C++G+      L+ EM ++  LP   TY  L+ GL
Sbjct: 581 KFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGL 640

Query: 391 CKHGQLKNANMLLDTMLDLGVV-PDDITYNILLEGHCKHG 429
           CK G++  A +L    ++ G++ P+   Y  L++G  KHG
Sbjct: 641 CKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHG 680



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 152/312 (48%), Gaps = 11/312 (3%)

Query: 132  FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            +N+L+H   K   +    M++ +  + G      S+++LI G+C++K+ D   ++   + 
Sbjct: 739  YNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWIT 798

Query: 192  GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
              G   D +T++ LI   C+ N +  A  L+ +M +  + PN   +  L +G  +     
Sbjct: 799  LEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIR----- 853

Query: 252  MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
               D  +A +++  +  +G  P    Y  L++G C+ G+++ A+ ++ EM   GI   NV
Sbjct: 854  -TSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNV 912

Query: 312  AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            A +A++ G     K+  A  +L  ML++ + P  AT+T ++  +CK  +      L   M
Sbjct: 913  AMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIM 972

Query: 372  RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                    V  YN L++GLC +G ++ A  L + M    + P+   Y +L++  C  GN 
Sbjct: 973  EHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCA-GNY 1031

Query: 432  EDFDKLQSEKGL 443
            +    ++SEK L
Sbjct: 1032 Q----IESEKLL 1039



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 169/367 (46%), Gaps = 44/367 (11%)

Query: 126  SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            SP+  V+  L+  L K G  + A  +F+E   + +    V+FN +I+ + +     +   
Sbjct: 663  SPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVND 722

Query: 186  LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            + S M+   +  ++ TY+ L++G  K + +    +L  +M   G  P+   + +LI G+C
Sbjct: 723  ILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYC 782

Query: 246  KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            ++   D+A       KI+  +   G   D+ T+ +L+  FC+  +++ A ++ K+M +  
Sbjct: 783  QSKSFDVA------IKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFM 836

Query: 306  IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            +  +   + AL +G  R     +A R+L+ +L+ G  P +  Y  +I+  C+ G+ K   
Sbjct: 837  VIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAM 896

Query: 366  RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP------------ 413
            +L  EM++ G        +A++ GL    +++NA  +LD ML++ ++P            
Sbjct: 897  KLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVY 956

Query: 414  -----------------------DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
                                   D + YN+L+ G C +G+ E   KL  E   + L  + 
Sbjct: 957  CKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNT 1016

Query: 448  ACYTSLV 454
            + Y  L+
Sbjct: 1017 SIYIVLI 1023



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 116  FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
             Y +++ +G+ P  + ++ L+   C+      A  +       G      +FN LI   C
Sbjct: 758  LYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFC 817

Query: 176  KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            +   + + F L   M    + P+V TY+AL NGL + +    A  +L  + E G  P + 
Sbjct: 818  ERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNK 877

Query: 236  IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
             + TLI+G C+       G++K A K+ DEM T G++   +  + ++ G      +E+A+
Sbjct: 878  QYITLINGMCR------VGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAI 931

Query: 296  DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
             +   M++  I      FT L+  +C+   V +A  +   M    +K D   Y ++I   
Sbjct: 932  WVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGL 991

Query: 356  CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK-HGQLKNANMLLD 404
            C NGD +  F+L +EM+     P    Y  L++  C  + Q+++  +L D
Sbjct: 992  CANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRD 1041



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 127  PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            P+V  F  LMH  CKE  +  A  +        +    V++N LI+G C   +++  F+L
Sbjct: 944  PTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKL 1003

Query: 187  KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
               M+   + P+   Y  LI+  C  N   ++E LL ++ +R L   +  F       C 
Sbjct: 1004 YEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRDIQDRELMRLNQQF-------CY 1056

Query: 247  NGRIDMA 253
            + R D+A
Sbjct: 1057 SSRCDIA 1063


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 215/431 (49%), Gaps = 21/431 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKG  + A  +  +L   G  +     +AL++ Y     L  A  C+ L+      +P  
Sbjct: 191 KKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA--CWLLMM-----MPLM 243

Query: 96  GCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
           GCR        LI  +         L     ++  G S +++ + +L+  LCKEG+I DA
Sbjct: 244 GCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDA 303

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           + + DE   RG+  +  ++N +I+G+CK+  + +   +K++ME +G  PD +TY++LI G
Sbjct: 304 RGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYG 363

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   +LD+AE LL+    RG TP  + FT LI+G+CK  RID      +A ++   M +
Sbjct: 364 LCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERID------DALRVKSNMIS 416

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +    D   Y +L++   K+  L+ A +   EM   G+  + V +T++I G+C+ G V  
Sbjct: 417 SNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGA 476

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  + + M   G  P+  TY  +I    ++        L+ +M+ DG  P V TY  L+ 
Sbjct: 477 ALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQ 536

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA 448
           G CK  +  NA  L + M   G+ PD+  YN+L +  CK G  E+       KG+V    
Sbjct: 537 GQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKV 596

Query: 449 CYTSLVSKSSK 459
            YTSLV   SK
Sbjct: 597 TYTSLVDGFSK 607



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 9/300 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + +  L++ L ++ K+  A  +  +  + G+    +++ TLI G CK    D  
Sbjct: 488 GCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNA 547

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +ME +G+ PD   Y+ L + LCK  R ++A   L     +G+    V +T+L+DG
Sbjct: 548 FRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDG 604

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G  D A        ++++M   G   D  TY++LL   CK+  L  AL I  +M  
Sbjct: 605 FSKAGNTDFAA------VLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTV 658

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + VA+T +IS   + GK   A+ +  EM+  G KP   TYT+ I  +CK G  + 
Sbjct: 659 SGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEE 718

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM  DG  P V TYN  +NG    G +  A   L  M+D    P+  TY +LL+
Sbjct: 719 AEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLK 778



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 12/328 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + VL++ L K+ ++K+A+   +E    GL    V++ ++I+G+CK   +     +  +M
Sbjct: 425 AYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLM 484

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G  P+ +TY +LI GL ++ +L  A  L+ +M E G+TP  + +TTLI G CK    
Sbjct: 485 EHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 544

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D       A ++ + M  NGL PD+  Y +L D  CK G  E A      ++++G+ L  
Sbjct: 545 D------NAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSF---LVRKGVVLTK 595

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +T+L+ GF + G    A  ++ +M+  G K D  TY++++   CK         +L +
Sbjct: 596 VTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQ 655

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    +  Y  +++ + K G+  +A  L + M+  G  P   TY + +  +CK G 
Sbjct: 656 MTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGR 715

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLVS 455
            E+ + L  E    G+  D   Y   ++
Sbjct: 716 IEEAEHLIGEMERDGVTPDVVTYNIFIN 743



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 157/328 (47%), Gaps = 22/328 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G    +Y ++VL+  LCK+ K+ +A  + D+    G+    V++  +I+   K  
Sbjct: 620 KMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEG 679

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D    L + M  SG +P   TY+  I+  CK  R+++AE L+ EM   G+TP+ V + 
Sbjct: 680 KHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYN 739

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG--------- 289
             I+G    G ID A      +++VD  C     P+  TY +LL  F K           
Sbjct: 740 IFINGCGHMGYIDRA--FSTLKRMVDASC----EPNCWTYWLLLKHFLKMSLINAHYVDT 793

Query: 290 -------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
                  +L     + + M+K G+    V ++++I+GFC+  ++ EA  +L  ML   + 
Sbjct: 794 SGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDIS 853

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P++  YTM+I C C           + +M   G  P +E+Y+ L+ GLC  G    A  L
Sbjct: 854 PNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSL 913

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGN 430
              +L +    +++ + IL +G  K G+
Sbjct: 914 FCDLLGMDYNHNEVAWKILNDGLLKAGH 941



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 158/367 (43%), Gaps = 63/367 (17%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P    +NVL   LCK G+ ++A   +    ++G+  T V++ +L++G  KA N D  
Sbjct: 558 GLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFA 614

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G + D+YTYS L+  LCK+ +L++A  +L +M   G+  N V +T +I  
Sbjct: 615 AVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISE 674

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+ D       A+ + +EM ++G  P   TYT+ +  +CK G +E A  +  EM +
Sbjct: 675 MIKEGKHD------HAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMER 728

Query: 304 RGIELDNVAFTALISG----------FCRGGKVVEAE----------------------- 330
            G+  D V +   I+G          F    ++V+A                        
Sbjct: 729 DGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINA 788

Query: 331 ------------------RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
                             ++L  M+K GL P   TY+ +I  FCK    +    LL  M 
Sbjct: 789 HYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHML 848

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
                P  E Y  L+   C       A   +  M++ G  P   +Y+ L+ G C  G   
Sbjct: 849 GKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEG--- 905

Query: 433 DFDKLQS 439
           D+D+ +S
Sbjct: 906 DYDRAKS 912



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +++ G+  D V +  +I  +C+ G +  A R    + + G++ D  T   ++  +C+  D
Sbjct: 170 LVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSD 229

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +    LL  M   G      +Y  L+ GLC+   ++ A +L+  M+  G   +  TY +
Sbjct: 230 LRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTL 289

Query: 421 LLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           L++G CK G   D   L  E   +G+V     Y +++
Sbjct: 290 LIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMI 326



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKL 139
           + LL KH+ ++        +D     N   + + + L   ++ +G +P+V  ++ ++   
Sbjct: 773 YWLLLKHFLKMSLINAH-YVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGF 831

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           CK  ++++A ++ D    + +      +  LI   C  K   +     + M   G +P +
Sbjct: 832 CKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQL 891

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
            +Y  LI GLC E   D A+ L  ++       N+V +  L DG  K G +D    +  A
Sbjct: 892 ESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAA 951



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 49/97 (50%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F  +++++G+ P +  ++ L+  LC EG    A+ +F +      +   V++  L +
Sbjct: 875 AVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILND 934

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           G  KA ++D   +L + M+    R D  +YS L + +
Sbjct: 935 GLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 230/469 (49%), Gaps = 33/469 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLV 61
           F  +L A++ ++H LV  +  + AR +L  ++S +    +  LF  ++E  +        
Sbjct: 118 FPPSLLAHAQLLHILVRARRSADARAILASLLSARP--PAPPLFPHLVEVYKEFSFSAAS 175

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            D L+    + G LD A+Q F  +R    R+  R C  +++R+ +T     T+  + ++ 
Sbjct: 176 FDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQ 235

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G  P  +   ++    CK   +  A    +E  K G+    V+++ ++NG+C+    +
Sbjct: 236 RAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTN 295

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTL 240
           +  R+   + G G  P++ TY+ L+ G C E  +++AE ++ E+ + + L  ++ +F  +
Sbjct: 296 DARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAV 355

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           I+G+C+ GR++ A                             G M EA  I+ EM   G+
Sbjct: 356 INGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGV 415

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD  +Y  L+DG+CK+G +  A +    M++ G     + + AL+ GFC  G + +A R
Sbjct: 416 RPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALR 475

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +   MLK G+ P++ + + ++D F K+G T+    L KE  + G      T+N ++NGLC
Sbjct: 476 LWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLC 535

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           K  ++  A  L+D M      PD ITY  L  G+CK G+ +   ++ +E
Sbjct: 536 KIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNE 584



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 185/365 (50%), Gaps = 33/365 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-RGLHATAVSFNTLINGHCKAKNLDE 182
           G+SP++  + +L+   C E  +++A+ V  E  K + L      F  +ING+C+   +++
Sbjct: 308 GFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMED 367

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL + M  S ++ +++ Y+ +ING CK  R+ +A  +LHEM   G+ P+   + +L+D
Sbjct: 368 AARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVD 427

Query: 243 GHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNP 273
           G+CK G ++ A                             G + +A ++   M   G+ P
Sbjct: 428 GYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAP 487

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           ++I+ + LLDGF K G  E AL++ KE + RG+  +   F  +I+G C+  ++ EAE ++
Sbjct: 488 NEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELV 547

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            +M +    PD  TY  +   +CK GD     R+L E+ + G  P +E +N+L+ G    
Sbjct: 548 DKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIA 607

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACY 450
            Q    N +L  M + G+ P+ + Y  L+ G CK G+      L     EKGLV +    
Sbjct: 608 KQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFIC 667

Query: 451 TSLVS 455
           +SLVS
Sbjct: 668 SSLVS 672



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 208/477 (43%), Gaps = 58/477 (12%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKG+ + A    + +   G     L  +AL+  +  LG +DDA++ + L+ K        
Sbjct: 431 KKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEI 490

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
            C  L+D   ++      L  + E L  G + +   FN +++ LCK  ++ +A+ + D+ 
Sbjct: 491 SCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKM 550

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG----------------------- 192
            +       +++ TL +G+CK  ++D   R+ + +E                        
Sbjct: 551 KQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQH 610

Query: 193 ------------SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
                        G+ P+   Y ALI G CKE  L  A  L  EM E+GL PN  I ++L
Sbjct: 611 GKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSL 670

Query: 241 IDGHCKNGRID-------------MAGDMKEAR-------KIVDEMCTNGLNPDKITYTI 280
           +    + G+ D             M  D+   R         +D +     +  KI + I
Sbjct: 671 VSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNI 730

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++ G CK G +E A ++  ++  +G   DN  +++LI G    G V  A  +   ML VG
Sbjct: 731 VIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVG 790

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L P+  TY  +I   CK+G+      L K++ + G  P   TYN L++  CK G +  A 
Sbjct: 791 LTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAF 850

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            L   M++ G+ P   TY+IL+ G C  G  E+  KL     E  +  +Y  Y +L+
Sbjct: 851 KLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLI 907



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 171/365 (46%), Gaps = 35/365 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G  P  Y +N L+   CK+G +  A   ++   + G  AT +++N L+ G C   
Sbjct: 409 EMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLG 468

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++D+  RL  +M   G+ P+  + S L++G  K  + + A  L  E   RGL  N   F 
Sbjct: 469 SIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFN 528

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I+G CK  R      M EA ++VD+M      PD ITY  L  G+CK GD++ A  I 
Sbjct: 529 TVINGLCKIER------MPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRIL 582

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E+   G       F +LI+G     +  +   +L EM   GL P+   Y  +I  +CK 
Sbjct: 583 NELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKE 642

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD---- 414
           GD  T + L  EM   G +P +   ++L++   + G+   AN++L  ++   ++PD    
Sbjct: 643 GDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAP 702

Query: 415 ----------------------DITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYAC 449
                                  I +NI++ G CK G  ED   L +   +KG V+D   
Sbjct: 703 RLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFT 762

Query: 450 YTSLV 454
           Y+SL+
Sbjct: 763 YSSLI 767



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 171/338 (50%), Gaps = 38/338 (11%)

Query: 119 EILDYGYSPSVYVFNVLM--HKLCKE-GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           E+ + G++P++  FN L+  H + K+ GK+ D   +  E   RGL    V++  LI G C
Sbjct: 584 ELENLGFAPTIEFFNSLITGHFIAKQHGKVND---ILFEMSNRGLSPNTVAYGALIAGWC 640

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN-- 233
           K  +L   + L   M   G+ P+++  S+L++   ++ + D+A L+L  +    + P+  
Sbjct: 641 KEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDIS 700

Query: 234 ------------------------DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
                                    +++  +I G CK GRI+      +A+ ++ ++   
Sbjct: 701 APRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIE------DAKNLLADLKDK 754

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G   D  TY+ L+ G    G ++ A D+R  M+  G+  + V + +LI G C+ G++  A
Sbjct: 755 GFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRA 814

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             + +++   G+ P+  TY  +ID  CK+G     F+L + M  +G  P V TY+ L+NG
Sbjct: 815 VSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILING 874

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           LC  G ++ A  LLD M++  V P+ +TY  L++G+ +
Sbjct: 875 LCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVR 912



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 82/133 (61%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G +P++  +N L++ LCK G++  A  +F +   +G+   A+++NTLI+ HCK   
Sbjct: 786 MLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGY 845

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E F+LK  M   G+ P V+TYS LINGLC +  +++A  LL +M E  + PN V + T
Sbjct: 846 ITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWT 905

Query: 240 LIDGHCKNGRIDM 252
           LI G+ +   +D+
Sbjct: 906 LIQGYVRCESVDV 918



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 40  GSSASLFASI-LETRGTHL-----PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           G SAS F  +  + R T L     P +V  ++L+      G L  A+  F+ L       
Sbjct: 769 GCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISP 828

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
            A     LID+  +    T        +++ G  P+V+ +++L++ LC +G +++A  + 
Sbjct: 829 NAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLL 888

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D+  +  +    V++ TLI G+ + +++D
Sbjct: 889 DQMIENNVDPNYVTYWTLIQGYVRCESVD 917


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 182/336 (54%), Gaps = 9/336 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I D    P V ++N ++  LCK+  + +A   + E   RG+    ++++TLI G C A  
Sbjct: 263 IEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQ 322

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L   F L + M    + PDVYTY+ LI+ LCKE +L +A+ LL  M + G+ PN V ++T
Sbjct: 323 LMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYST 382

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+DG+C      + G++  A++I   M    +NP   +Y I+++G CK   ++ A+++ +
Sbjct: 383 LMDGYC------LVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLR 436

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ + +  + V + +LI G C+ G++  A  +++E+   G   D  TYT ++D  CKN 
Sbjct: 437 EMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQ 496

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +      L  +M+  G  P   TY AL++GLCK  +LKNA  L   +L  G   D  TYN
Sbjct: 497 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYN 556

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           +++ G CK G     D+  + K  + D  C    V+
Sbjct: 557 VMIGGLCKEGM---LDEALAMKSKMEDNGCIPDAVT 589



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 188/340 (55%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P+  +   LM  LC +G++K +    D+   +G     VS+ TL+NG CK  
Sbjct: 192 KILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIG 251

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L  ++E    RPDV  Y+ +I+GLCK+  +++A     EM  RG+ P+ + ++
Sbjct: 252 ETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYS 311

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C      +AG +  A  +++EM    +NPD  TYTIL+D  CKEG L+ A ++ 
Sbjct: 312 TLICGFC------LAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLL 365

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M K G++ + V ++ L+ G+C  G+V  A+++   M++  + P   +Y ++I+  CK 
Sbjct: 366 GVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKG 425

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   LL+EM     +P   TYN+L++GLCK G++ +A  L+  +   G   D ITY
Sbjct: 426 KSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITY 485

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             LL+G CK+ N +     F K++ E+G+  +   YT+L+
Sbjct: 486 TSLLDGLCKNQNLDKAIALFMKMK-ERGIQPNKYTYTALI 524



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +   ++L++  C  G++  +  V  +  K G     +   TL+ G C    + + 
Sbjct: 162 GIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKS 221

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 +   G + +  +Y  L+NGLCK      A  LL  + +R   P+ V++ T+IDG
Sbjct: 222 LHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDG 281

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+  ++      EA     EM + G+ PD ITY+ L+ GFC  G L  A  +  EM  
Sbjct: 282 LCKDKLVN------EAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTL 335

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + I  D   +T LI   C+ GK+ EA+ +L  M K G+KP+  TY+ ++D +C  G+   
Sbjct: 336 KNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHN 395

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++   M      P+V +YN ++NGLCK   +  A  LL  ML   VVP+ +TYN L++
Sbjct: 396 AKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLID 455

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           G CK G   +  D  K    +G  +D   YTSL+
Sbjct: 456 GLCKSGRITSALDLMKELHHRGQPADVITYTSLL 489



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 158/332 (47%), Gaps = 9/332 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +PS+  F  ++  L K      A  +  +   +G+    V+ + LIN  C    +   F 
Sbjct: 129 TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFS 188

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   +   G +P+    + L+ GLC +  +  +     ++  +G   N V + TL++G C
Sbjct: 189 VLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLC 248

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G    A  +K  R I D        PD + Y  ++DG CK+  +  A D   EM  RG
Sbjct: 249 KIGETRCA--IKLLRMIEDR----STRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRG 302

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D + ++ LI GFC  G+++ A  +L EM    + PD  TYT++ID  CK G  K   
Sbjct: 303 IFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAK 362

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL  M  +G  P V TY+ LM+G C  G++ NA  +   M+   V P   +YNI++ G 
Sbjct: 363 NLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGL 422

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           CK  + ++   L  E   K +V +   Y SL+
Sbjct: 423 CKGKSVDEAMNLLREMLHKNVVPNTVTYNSLI 454



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 26/241 (10%)

Query: 190 MEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           ME + G+ P++ T S LIN L    ++  +  +L ++ + G  PN +  TTL+ G  +  
Sbjct: 1   MEAAKGIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETRCA 60

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                  +K  R I           D+ T  ++         L S+L          +  
Sbjct: 61  -------IKLPRMI----------EDRSTRPLMW--------LSSSLSHSIPNFPPFLPN 95

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               F            V +A      ML +   P    +  ++    K     T   L 
Sbjct: 96  PTFPFYFHSQPPSIHDVVHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLS 155

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           K+M   G  P + T + L+N  C  GQ+  +  +L  +L LG  P+ I    L++G C  
Sbjct: 156 KQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLK 215

Query: 429 G 429
           G
Sbjct: 216 G 216


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 182/323 (56%), Gaps = 6/323 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID +++       L    E++   + P+V  + +L++  CK+G++++A  + +    +G
Sbjct: 383 MIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG 442

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V +N LI   CK  N++E  +L   M G G +PD+YT+++LINGLCK +++++A 
Sbjct: 443 LSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEAL 502

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L H+M   G+  N V + TL+          M   +++A K+VDEM   G   D ITY 
Sbjct: 503 SLYHDMFLEGVIANTVTYNTLVHAFL------MRDSIQQAFKLVDEMLFRGCPLDNITYN 556

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+   CK G +E  L + +EM+ +GI    ++   LISG CR GKV +A + L++M+  
Sbjct: 557 GLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHR 616

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL PD  TY  +I+  CK G  +    L  +++S+G  P   TYN L++  C  G   +A
Sbjct: 617 GLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDA 676

Query: 400 NMLLDTMLDLGVVPDDITYNILL 422
            +LL   +D G +P+++T++IL+
Sbjct: 677 CLLLYKGVDSGFIPNEVTWSILI 699



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 197/391 (50%), Gaps = 55/391 (14%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+DRM+         GF  + L YGY         LMH LC+ G++ +A+ + ++     
Sbjct: 297 LLDRMLLR-------GFSTDALTYGY---------LMHGLCRMGQVDEARALLNKIP--- 337

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +   V +NTLI+G+  +   +E   L  + M  +G  PD YT++ +I+GL K+  L  A
Sbjct: 338 -NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSA 396

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------- 253
             LL+EM  +   PN + +T LI+G CK GR++ A                         
Sbjct: 397 LELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICA 456

Query: 254 ----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
               G+++EA ++  EM   G  PD  T+  L++G CK   +E AL +  +M   G+  +
Sbjct: 457 LCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIAN 516

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  L+  F     + +A +++ EML  G   D+ TY  +I   CK G  + G  L +
Sbjct: 517 TVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFE 576

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G  P + + N L++GLC+ G++ +A   L  M+  G+ PD +TYN L+ G CK G
Sbjct: 577 EMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMG 636

Query: 430 NPED----FDKLQSEKGLVSDYACYTSLVSK 456
           + ++    F+KLQSE G+  D   Y +L+S+
Sbjct: 637 HVQEASNLFNKLQSE-GIRPDAITYNTLISR 666



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 160/314 (50%), Gaps = 6/314 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y  ++  GY P  Y FN+++  L K+G +  A  + +E   +      +++  LING C
Sbjct: 364 LYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFC 423

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   L+E   + + M   G+  +   Y+ LI  LCK+  +++A  L  EM  +G  P+  
Sbjct: 424 KQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIY 483

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F +LI+G CKN +      M+EA  +  +M   G+  + +TY  L+  F     ++ A 
Sbjct: 484 TFNSLINGLCKNHK------MEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAF 537

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM+ RG  LDN+ +  LI   C+ G V +   +  EML  G+ P   +  ++I   
Sbjct: 538 KLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGL 597

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G      + L++M   G  P + TYN+L+NGLCK G ++ A+ L + +   G+ PD 
Sbjct: 598 CRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDA 657

Query: 416 ITYNILLEGHCKHG 429
           ITYN L+  HC  G
Sbjct: 658 ITYNTLISRHCHEG 671



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 201/433 (46%), Gaps = 60/433 (13%)

Query: 82  FRLLRKHYFR--IPARGCRCLIDR-------------------MMRTNLPTVTLGFYLEI 120
           F L+ KHY +  +P +  R L+D                    ++  + P V    + ++
Sbjct: 137 FILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDM 196

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G SP+VY F V+M  LC   ++  A  +  +  K G    +V + TLI+  C+   +
Sbjct: 197 LSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRV 256

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT--------- 231
            E  +L   M      PDV T++ +I+GLC+  R+ +A  LL  M  RG +         
Sbjct: 257 SEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYL 316

Query: 232 ----------------------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
                                 PN V++ TLI G+  +GR + A D+     + + M   
Sbjct: 317 MHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDL-----LYNNMVIA 371

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD  T+ I++DG  K+G L SAL++  EM+ +  E + + +T LI+GFC+ G++ EA
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEA 431

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++  M   GL  +   Y  +I   CK+G+ +   +L  EM   G  P + T+N+L+NG
Sbjct: 432 AEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LCK+ +++ A  L   M   GV+ + +TYN L+       + +   KL  E   +G   D
Sbjct: 492 LCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLD 551

Query: 447 YACYTSLVSKSSK 459
              Y  L+    K
Sbjct: 552 NITYNGLIKALCK 564



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           D   Q F+L+ +  FR    GC         LI  + +T      LG + E+L  G  P+
Sbjct: 531 DSIQQAFKLVDEMLFR----GCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPT 586

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +   N+L+  LC+ GK+ DA     +   RGL    V++N+LING CK  ++ E   L +
Sbjct: 587 IISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFN 646

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            ++  G+RPD  TY+ LI+  C E   +DA LLL++  + G  PN+V ++ LI+
Sbjct: 647 KLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +L+D     GD +    + K+M   G+      F  ++  + + G   +A R+L +M  V
Sbjct: 104 LLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGV 163

Query: 340 -GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
               P   +Y +V+D        +    +  +M S G  P V T+  +M  LC   ++ +
Sbjct: 164 YSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDS 223

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           A  LL  M   G VP+ + Y  L+   C++
Sbjct: 224 ACSLLRDMAKHGCVPNSVIYQTLIHALCEN 253


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 182/336 (54%), Gaps = 9/336 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G SP+V ++  L+   CK G I+ A++ FD+ G+ GL A   +F  LING  K     
Sbjct: 190 DMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKK 249

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +GF L   M+ +G+ P++YTY+ L+N  C E ++  A  L  EM ERG+  N V + TLI
Sbjct: 250 DGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLI 309

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C+  R+       EA K+VD+M    ++P+ ITY  L+ GFC  G+L+ A  +  ++
Sbjct: 310 GGMCREERV------WEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQL 363

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              G+    V +  LI G+ + G       + REM   G+ P   T T++ID + +  + 
Sbjct: 364 KSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEM 423

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +  F++   M   G +P V  Y  L++GLC  G +K ++ L  +M ++ V P D+ YN +
Sbjct: 424 EKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTM 483

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + G+CK  N     +L  E   KGLV + A Y+S++
Sbjct: 484 IHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSII 519



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 170/298 (57%), Gaps = 6/298 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++Y +N LM++ C EGKI  A  +FDE  +RG+ A  V++NTLI G C+ + + E 
Sbjct: 262 GLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEA 321

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M+ + + P++ TY+ LI G C    LD A  LL ++   GL+P+ V +  LI+G
Sbjct: 322 EKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEG 381

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K      AG+ K    +  EM   G++P K+T T+L+D + +  ++E A  I   M K
Sbjct: 382 YSK------AGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEK 435

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D   +  LI G C  G + E+ ++ R M ++ ++P D  Y  +I  +CK  ++  
Sbjct: 436 FGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYR 495

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
             RLL+EM + G +P V +Y++++  LCK G+ + A +LLD M++L + P     N++
Sbjct: 496 ALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMI 553



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 155/305 (50%), Gaps = 18/305 (5%)

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM--RPDVYTYSALINGLCKENRLDDAE 219
            TA+ + ++IN H K++ LD+     + M   G+  RP+++  ++L+  L + N  + A 
Sbjct: 91  TTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIF--NSLLGSLVRSNCFEKAW 148

Query: 220 LLLHEMCERGLTPNDVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           L  +E+ ER     DV  F  +I G C+NG +D      ++ +++  +   GL+P+ + Y
Sbjct: 149 LFFNELKER--VKFDVYSFGIMIKGCCENGNLD------KSFQLLGLLQDMGLSPNVVIY 200

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T L+DG CK GD+E A     +M + G+  +   FT LI+G  + G   +   +  +M  
Sbjct: 201 TTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKI 260

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            GL P+  TY  +++ +C  G     F L  EMR  G    V TYN L+ G+C+  ++  
Sbjct: 261 NGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWE 320

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           A  L+D M    V P+ ITYN L+ G C  GN +      D+L+S  GL      Y  L+
Sbjct: 321 AEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKS-NGLSPSLVTYNILI 379

Query: 455 SKSSK 459
              SK
Sbjct: 380 EGYSK 384



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 80/144 (55%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  LID  +R          Y  +  +G  P VYV+ VL+H LC +G +K++  +F   G
Sbjct: 410 CTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMG 469

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +  +  + V +NT+I+G+CK  N     RL   ME  G+ P+V +YS++I  LCK+ + +
Sbjct: 470 EMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWE 529

Query: 217 DAELLLHEMCERGLTPNDVIFTTL 240
           +AE+LL +M E  L P+  I   +
Sbjct: 530 EAEVLLDKMIELQLKPSASILNMI 553


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 207/389 (53%), Gaps = 21/389 (5%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLID------RMMRTNLPTVTLGFYLEILDYGYSPSV 129
           DDA+  FR +      I +R    +ID       + +T    + L    ++   G + S+
Sbjct: 70  DDAVDLFRDM------IQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSI 123

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y  +++++  C+  K+  A     +  K G     V FNTL+NG C    + E   L   
Sbjct: 124 YTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDR 183

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G +P + T + L+NGLC   ++ DA +L+  M E G  PN+V +  +++  CK+G+
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             +A  M+  RK    M    +  D + Y+I++DG CK+G L++A ++  EM  +G + D
Sbjct: 244 TALA--MELLRK----MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            + +  LI GFC  G+  +  ++LR+M+K  + P+  T++++ID F K G  +   +LLK
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G  P   TYN+L++G CK  +L+ A  ++D M+  G  PD +T+NIL+ G+CK  
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVS 455
             +D  +L  E   +G++++   Y +LV 
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQ 446



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 177/326 (54%), Gaps = 10/326 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G+ P++   N L++ LC  GK+ DA ++ D   + G     V++  ++N  CK+  
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 L   ME   ++ D   YS +I+GLCK+  LD+A  L +EM  +G   + + + T
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNT 303

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C  GR D      +  K++ +M    ++P+ +T+++L+D F KEG L  A  + K
Sbjct: 304 LIGGFCNAGRWD------DGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM++RGI  + + + +LI GFC+  ++ EA +M+  M+  G  PD  T+ ++I+ +CK  
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               G  L +EM   G +    TYN L+ G C+ G+L+ A  L   M+   V PD ++Y 
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477

Query: 420 ILLEGHCKHGNPED----FDKLQSEK 441
           ILL+G C +G  E     F K++  K
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSK 503



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 176/329 (53%), Gaps = 41/329 (12%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +++++  LCK+G + +A  +F+E   +G  A  +++NTLI G C A   D+G +L   M 
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
              + P+V T+S LI+   KE +L +A+ LL EM +RG+ PN + + +LIDG CK  R++
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 EA ++VD M + G +PD +T+ IL++G+CK   ++  L++ +EM  RG+  + V
Sbjct: 386 ------EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  L+ GFC+ GK+  A+++ +EM+   ++PD  +Y +++D  C NG+ +    +  ++
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499

Query: 372 RSDG-----------------------------HLPA------VETYNALMNGLCKHGQL 396
                                             LP          YN +++ LC+   L
Sbjct: 500 EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSL 559

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGH 425
             A++L   M + G  PD++TYNIL+  H
Sbjct: 560 SKADILFRKMTEEGHAPDELTYNILIRAH 588



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 158/292 (54%), Gaps = 7/292 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V  F+VL+    KEGK+++A  +  E  +RG+    +++N+LI+G CK   L+E  +
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQ 389

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M   G  PD+ T++ LING CK NR+DD   L  EM  RG+  N V + TL+ G C
Sbjct: 390 MVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFC 449

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           ++G++++A      +K+  EM +  + PD ++Y ILLDG C  G+LE AL+I  ++ K  
Sbjct: 450 QSGKLEVA------KKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +ELD   +  +I G C   KV +A  +   +   G+K D   Y ++I   C+        
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            L ++M  +GH P   TYN L+           A  L++ M   G  P D++
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG-FPADVS 614



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%)

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           N+++   +S    G K  +A  + R+M++    P    +  +     K    +    L K
Sbjct: 53  NLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCK 112

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +M S G   ++ T + ++N  C+  +L  A   +  ++ LG  PD + +N LL G C
Sbjct: 113 QMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC 169


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 32/368 (8%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E+ + G  P++  +N ++H L K  +++ AQ+ F E    GL    +++N+++NG+CKA
Sbjct: 338 MEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKA 397

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            NL E   L   +  +G+ P V TY+ LI+G C+   L++A  L  EM E+G  P+   +
Sbjct: 398 GNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTY 457

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
           T L++G  K   + MA                             GD  +A ++ + M  
Sbjct: 458 TILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMML 517

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G+ PD +TY +++DG CK G+L+ A D++ +M+  G++ D + +T LI   C  G + E
Sbjct: 518 KGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSE 577

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A ++L  M+  GL+P   TYT++I   C+ G+  + +   ++M   G  P   TYN L++
Sbjct: 578 ARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIH 637

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
            LC+ G+   A      ML+ G+ P+  TY +L++G+C+ GN  D  +L  E    G+  
Sbjct: 638 ALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPP 697

Query: 446 DYACYTSL 453
           DY  + +L
Sbjct: 698 DYCTHNAL 705



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 163/343 (47%), Gaps = 41/343 (11%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+   G  P +  +N +++  CK G +K+A  +  +  + GL  T +++NTLI+G+C+
Sbjct: 372 FAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCR 431

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--- 233
              L+E  RLK  M   G  PDV TY+ L+NG  K   L  A     EM  +GL P+   
Sbjct: 432 LGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFA 491

Query: 234 --------------------------------DVIFTTLIDGHCKNGRIDMAGDMKEARK 261
                                            V +  +IDG CK G      ++K+A+ 
Sbjct: 492 YNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTG------NLKDAKD 545

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           +  +M ++GL PD ITYT L+   C+ G L  A  +   M+  G++   V +T LI   C
Sbjct: 546 LKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCC 605

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           R G +  A    R+ML VG++P++ TY ++I   C+ G T   +    EM   G  P   
Sbjct: 606 RRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKY 665

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           TY  L++G C+ G   +A  L   M   G+ PD  T+N L +G
Sbjct: 666 TYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKG 708



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 168/384 (43%), Gaps = 47/384 (12%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T+ L  +  +  +G +P V   N ++  L    +  D + V+ E  +  +  T V++NTL
Sbjct: 190 TLCLAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTL 249

Query: 171 INGHCKAKNLDEGFRLKSVME--GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           ++   K    DE   L   ME  G G   +  TY+ +I+ L +E  L++A  L+  M   
Sbjct: 250 LDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSM-RL 308

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
               +   +  LI    + G +      ++   +  EM   G+ P  +TY  ++ G  K 
Sbjct: 309 SKKASSFTYNPLITALLERGFV------QKVEALQMEMENEGIMPTLVTYNAIIHGLLKS 362

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             +E+A     EM   G+  D + + ++++G+C+ G + EA  +L ++ + GL P   TY
Sbjct: 363 EQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTY 422

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +ID +C+ G  +   RL +EM   G  P V TY  LMNG  K   L  A    D ML 
Sbjct: 423 NTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLS 482

Query: 409 -----------------------------------LGVVPDDITYNILLEGHCKHGNPED 433
                                               G+ PD +TYN++++G CK GN +D
Sbjct: 483 KGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKD 542

Query: 434 FDKLQSE---KGLVSDYACYTSLV 454
              L+ +    GL  D   YT L+
Sbjct: 543 AKDLKMKMVSDGLQPDCITYTCLI 566



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 6/200 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P    +NV++  LCK G +KDA+ +  +    GL    +++  LI+ HC+   L E 
Sbjct: 519 GIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEA 578

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L + M   G++P V TY+ LI+  C+   L  A     +M + G+ PN++ +  LI  
Sbjct: 579 RKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHA 638

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+ GR  +A           EM   GL P+K TYT+L+DG C+EG+   A+ +  EM +
Sbjct: 639 LCRTGRTLLAYHH------FHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQ 692

Query: 304 RGIELDNVAFTALISGFCRG 323
            GI  D     AL  GF +G
Sbjct: 693 NGIPPDYCTHNALFKGFDKG 712



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 54/97 (55%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G++ ++LD G  P+   +NVL+H LC+ G+   A   F E  +RGL     ++  LI+G+
Sbjct: 615 GWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGN 674

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           C+  N  +  RL   M  +G+ PD  T++AL  G  K
Sbjct: 675 CREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDK 711


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 200/388 (51%), Gaps = 9/388 (2%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           + G +D+ I  F+ +R+       R    +I  +   +     +  + E+ +    P+V+
Sbjct: 296 EAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVH 355

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + V++  +CKE K+ +++ + +E  ++GL  + V++N LI G+C+   ++    +  +M
Sbjct: 356 TYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLM 415

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E +  RP+  TY+ LI G  K   +  A  LL +M E  LTP+ V + +LI   CK G  
Sbjct: 416 ESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHF 475

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D       A K++D +  NGL PD+ TY++ +D  CK   +E A D+   + ++GI+ + 
Sbjct: 476 D------SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANE 529

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +TALI G C+ GK+ EA  +L  M      P+ +TY  +I   CK G  + G  +++ 
Sbjct: 530 VMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVEN 589

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P V TY  L+  + + G   +AN + + M+  G  PD  TY   +  +C  GN
Sbjct: 590 MSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGN 649

Query: 431 PEDFDKLQS---EKGLVSDYACYTSLVS 455
            ++ + + +   E G++ D   YT L+S
Sbjct: 650 VKEAEGMMARMIEAGVMPDSLTYTLLIS 677



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 177/340 (52%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I   G SP  + +  L+   C+   +  A  VF+    +G     VS+ T+I+G C+A 
Sbjct: 239 KIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAG 298

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DEG  L   M      P V TY+ +I+ L   +R  +   L +EM ER   PN   +T
Sbjct: 299 RIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYT 358

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            ++D  CK  ++D      E+R+I++EM   GL P  +TY  L+ G+C+EG +E+AL+I 
Sbjct: 359 VMVDAMCKERKLD------ESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEIL 412

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M       +   +  LI GF +   V +A  +L +ML+  L P   TY  +I   CK 
Sbjct: 413 GLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKA 472

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G   + ++LL  ++ +G +P   TY+  ++ LCK  +++ A  L +++ + G+  +++ Y
Sbjct: 473 GHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMY 532

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             L++GHCK G  ++     +++ SE  L  + + Y SL+
Sbjct: 533 TALIDGHCKAGKIDEAISLLERMHSEDCL-PNSSTYNSLI 571



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 41/339 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDA---------------QMVFDE----FGKRG 159
           E+++ G  PSV  +N L+   C+EG+I+ A               +  ++E    F KR 
Sbjct: 379 EMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRK 438

Query: 160 ----------------LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
                           L  + V++N+LI+  CKA + D  ++L  +++ +G+ PD +TYS
Sbjct: 439 HVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYS 498

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
             I+ LCK  R+++A  L + + E+G+  N+V++T LIDGHCK G+ID      EA  ++
Sbjct: 499 VFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKID------EAISLL 552

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           + M +    P+  TY  L+ G CKEG ++  L + + M K G++     +T LI    R 
Sbjct: 553 ERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLRE 612

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G    A R+  +M+  G KPD  TYT  I  +C +G+ K    ++  M   G +P   TY
Sbjct: 613 GDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTY 672

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             L++   + G   +A  +L  MLD G  P    +N L+
Sbjct: 673 TLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 180/366 (49%), Gaps = 34/366 (9%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D  +  SV  +N L+  L +   I + + V+ E     +     + NT++N + K  N+ 
Sbjct: 172 DIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIV 231

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E     S +  +G+ PD +TY++LI G C+ N ++ A  + + M  +G   N+V +TT+I
Sbjct: 232 EANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTII 291

Query: 242 DGHCKNGRID---------------------------MAGDMK--EARKIVDEMCTNGLN 272
            G C+ GRID                           + G+ +  E   + +EM      
Sbjct: 292 HGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCE 351

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+  TYT+++D  CKE  L+ +  I  EM+++G+    V + ALI G+C  G++  A  +
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L  M     +P++ TY  +I  F K         LL +M      P++ TYN+L++  CK
Sbjct: 412 LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCK 471

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYA 448
            G   +A  LLD + + G+VPD  TY++ ++  CK    E+    F+ L+ EKG+ ++  
Sbjct: 472 AGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLK-EKGIKANEV 530

Query: 449 CYTSLV 454
            YT+L+
Sbjct: 531 MYTALI 536



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 42/257 (16%)

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN----GRIDMAGDMKEARKIVDEMCTNG 270
           +DD   LL  + +     ND+ F   +  + +      R  M  +MK   ++  EM  + 
Sbjct: 153 VDDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMK---RVYTEMLNDM 209

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + P+  T   +++ + K G++  A     ++ + G+  D+  +T+LI G+CR   V  A 
Sbjct: 210 IVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAY 269

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++   M   G + ++ +YT +I   C+ G    G  L K+MR D   P V TY  +++ L
Sbjct: 270 KVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329

Query: 391 -----------------------------------CKHGQLKNANMLLDTMLDLGVVPDD 415
                                              CK  +L  +  +L+ M++ G+VP  
Sbjct: 330 FGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSV 389

Query: 416 ITYNILLEGHCKHGNPE 432
           +TYN L+ G+C+ G  E
Sbjct: 390 VTYNALIRGYCEEGRIE 406


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 226/487 (46%), Gaps = 60/487 (12%)

Query: 22  MHSQARDLLHLIVSKKGMGSSASLFASILE---TRGTHLPGLVLDALMIVYVDLGFLDDA 78
            H + R +  LI+ K    ++  L+  +L+        +       L+  Y + G  + A
Sbjct: 88  WHLRCRTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKA 147

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           ++ F L+R    +        ++  ++R     + L  Y ++L    +P V  + +L+H 
Sbjct: 148 VESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHG 207

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
           LCK  K +DA ++FDE   RG+    + ++ +++G C+AK + +  RL S M  SG   D
Sbjct: 208 LCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRD 267

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           + TY+ L+NG CK   LDDA  LL  + + G     + +  LI+G  +  R +      E
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYE------E 321

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A     +M    + PD + YTI++ G  +EG +  AL +  EM +RG+  D + + ALI 
Sbjct: 322 AHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIK 381

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           GFC  G + EAE +  E+ K    P++ TY+++I   CKNG       + KEM   G LP
Sbjct: 382 GFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLP 441

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTM-------------------------------- 406
           +V T+N+L+NGLCK  +L+ A +L   M                                
Sbjct: 442 SVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERL 501

Query: 407 ----------------LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
                           +D GV+PD  TYNIL+ G CK GN     KL  E   KG + D 
Sbjct: 502 CESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDS 561

Query: 448 ACYTSLV 454
             Y +L+
Sbjct: 562 VTYGTLI 568



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 161/334 (48%), Gaps = 7/334 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G+LDDA    +LL K    +   G  CLI+ + R         +Y ++L     P V ++
Sbjct: 282 GYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLY 341

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            +++  L +EG++ +A  +  E  +RGL    + +N LI G C    LDE   L+  +  
Sbjct: 342 TIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISK 401

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P+ +TYS LI G+CK   ++ A+ +  EM + G  P+ V F +LI+G CK  R++ 
Sbjct: 402 HDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEE 461

Query: 253 AGDMKEARKIVDEMC-----TNGLNP--DKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           A  +    +IV +       + G +   D  +  ++++  C+ G +  A  +  +++  G
Sbjct: 462 ARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSG 521

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D   +  LI+GFC+ G +  A ++ +EM   G  PD  TY  +ID   + G  +   
Sbjct: 522 VLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDAL 581

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + ++M   G +P   TY  +M   C+   +  A
Sbjct: 582 EIFEQMVKKGCVPESSTYKTIMTWSCRENNISLA 615



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 160/400 (40%), Gaps = 72/400 (18%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL-LRKHYFRI 92
           +S++G  + A      +  RG     +  +AL+  + D+G+LD+A +  RL + KH    
Sbjct: 348 LSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA-ESLRLEISKHDCFP 406

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM-- 150
                  LI  M +  L       + E+   G  PSV  FN L++ LCK  ++++A++  
Sbjct: 407 NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLF 466

Query: 151 ---------------------VFD-------------------------EFGKRGLHATA 164
                                VFD                         +    G+    
Sbjct: 467 YQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDI 526

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            ++N LING CK  N++  F+L   M+  G  PD  TY  LI+GL +  R +DA  +  +
Sbjct: 527 RTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQ 586

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGD--MKEARKIVDEMCTNGLNPDKITYTILL 282
           M ++G  P    + T++   C+   I +A    MK  R         G   +K+   ++ 
Sbjct: 587 MVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDF------RGWEDEKV--RVVA 638

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           + F  E +L++A+    EM  +    D   +T  + G  +  +  EA  +   +    + 
Sbjct: 639 ESFDNE-ELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFSVLKDFKMN 697

Query: 343 PDDATYTMVID--CFCKNGDT---------KTGFRLLKEM 371
              A+  M+I   C  +N D          + GFRL+  +
Sbjct: 698 ISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPI 737


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 193/359 (53%), Gaps = 9/359 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + R N  +  +     ++  G  P +  + ++++ LCK G I  A  +  +  +  
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V +NT+I+  C  KN+++   L + M+  G+RP+V TY++LI  LC   R  DA 
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M ER + PN V F+ LID   K G+      + EA K+ DEM    ++PD  TY+
Sbjct: 312 RLLSDMIERKINPNVVTFSALIDAFVKEGK------LVEAEKLYDEMIKRSIDPDIFTYS 365

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++GFC    L+ A  + + MI +    + V +  LI GFC+  +V E   + REM + 
Sbjct: 366 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR 425

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL  +  TYT +I  F +  +      + K+M SDG LP + TY+ L++GLC +G+++ A
Sbjct: 426 GLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            ++ + +    + PD  TYNI++EG CK G  ED   L    S KG+  +   YT+++S
Sbjct: 486 LVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 544



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 181/331 (54%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V ++N ++  LC    + DA  +F E   +G+    V++N+LI   C      +  RL
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            S M    + P+V T+SALI+   KE +L +AE L  EM +R + P+   +++LI+G C 
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + R+D      EA+ + + M +    P+ +TY  L+ GFCK   ++  +++ +EM +RG+
Sbjct: 374 HDRLD------EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V +T LI GF +  +   A+ + ++M+  G+ PD  TY++++D  C NG  +T   
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + ++     P + TYN ++ G+CK G++++   L  ++   GV P+ +TY  ++ G C
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           + G  E+ D L     E+G + D   Y +L+
Sbjct: 548 RKGLKEEADALFREMKEEGPLPDSGTYNTLI 578



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 203/422 (48%), Gaps = 23/422 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            ++T++H L  H   S+A  L+  +V K   G    L             G+V++ L   
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVK---GCQPDLVTY----------GIVVNGL--- 231

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G +D A+   + + +            +ID +         L  + E+ + G  P+
Sbjct: 232 -CKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +N L+  LC  G+  DA  +  +  +R ++   V+F+ LI+   K   L E  +L  
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PD++TYS+LING C  +RLD+A+ +   M  +   PN V + TLI G CK  
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R+D      E  ++  EM   GL  + +TYT L+ GF +  + ++A  + K+M+  G+  
Sbjct: 411 RVD------EGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLP 464

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D + ++ L+ G C  GKV  A  +   + +  ++PD  TY ++I+  CK G  + G+ L 
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             +   G  P V TY  +M+G C+ G  + A+ L   M + G +PD  TYN L+  H + 
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD 584

Query: 429 GN 430
           G+
Sbjct: 585 GD 586



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 200/386 (51%), Gaps = 15/386 (3%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCL--IDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           LDDA+  F  +++   F       + L  I +M + +L  ++LG  ++ L  G S ++Y 
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDL-VISLGEQMQNL--GISHNLYT 118

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +++L++  C+  ++  A  V  +  K G     V+ N+L+NG C    + +   L   M 
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +PD +T++ LI+GL + NR  +A  L+  M  +G  P+ V +  +++G CK G ID
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           +      A  ++ +M    + P  + Y  ++D  C   ++  AL++  EM  +GI  + V
Sbjct: 239 L------ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            + +LI   C  G+  +A R+L +M++  + P+  T++ +ID F K G      +L  EM
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                 P + TY++L+NG C H +L  A  + + M+     P+ +TYN L++G CK    
Sbjct: 353 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 412

Query: 432 EDFDKL---QSEKGLVSDYACYTSLV 454
           ++  +L    S++GLV +   YT+L+
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLI 438



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 161/303 (53%), Gaps = 6/303 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++   +P+V  F+ L+    KEGK+ +A+ ++DE  KR +     ++++LING C   
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 375

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LDE   +  +M      P+V TY+ LI G CK  R+D+   L  EM +RGL  N V +T
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G  +      A +   A+ +  +M ++G+ PD +TY+ILLDG C  G +E+AL + 
Sbjct: 436 TLIHGFFQ------ARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF 489

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + + +  +E D   +  +I G C+ GKV +   +   +   G+KP+  TYT ++  FC+ 
Sbjct: 490 EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    L +EM+ +G LP   TYN L+    + G    +  L+  M     V D  T 
Sbjct: 550 GLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 609

Query: 419 NIL 421
            ++
Sbjct: 610 GLV 612



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 12/269 (4%)

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V + SG+R D    S  IN L  + +LDDA  L  +M +    P+ V F+ L+    K  
Sbjct: 39  VRDFSGVRYDYRKIS--INRL-NDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMN 95

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           + D+   + E      +M   G++ +  TY+IL++ FC+   L  AL +  +M+K G E 
Sbjct: 96  KFDLVISLGE------QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEP 149

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V   +L++GFC G ++ +A  ++ +M+++G +PD  T+  +I    ++        L+
Sbjct: 150 DIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALV 209

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G  P + TY  ++NGLCK G +  A  LL  M    + P  + YN +++  C +
Sbjct: 210 DRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNY 269

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
            N  D   L +E   KG+  +   Y SL+
Sbjct: 270 KNVNDALNLFTEMDNKGIRPNVVTYNSLI 298


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 175/316 (55%), Gaps = 6/316 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G SP+   F VL++  CK      A  VF+E  ++G+ A+ V++N+LI+G C   
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++EG +L   ME  G+ P+  T+  ++ G CK+  + DA   +  M ER + P+ VI+ 
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID + + G+++ A  +KEA      M   G++P+  TY  L+ GF + GD  SA  + 
Sbjct: 374 ILIDVYRRLGKMEDAMAVKEA------MAKKGISPNVTTYNCLITGFSRSGDWRSASGLL 427

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM ++GIE D V +  LI   C  G+V +A ++L EM +VGL+P+  TY  +I  FC  
Sbjct: 428 DEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDK 487

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ K+ + +   M        V TYN  +   C+ G++  AN LL+ MLD  +VP+ ITY
Sbjct: 488 GNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547

Query: 419 NILLEGHCKHGNPEDF 434
             + EG  + G   D 
Sbjct: 548 ETIKEGMMEKGYTPDI 563



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 9/308 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK---AKNLDE 182
           SP +Y FN ++  LC+ G+++ A  V  +    GL  +  ++N+LI+G+CK   A N+  
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L   M  +G+ P   T+  LING CK +    A  +  EM ++G+  + V + +LI 
Sbjct: 248 VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLIS 307

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C  G+++      E  K+++EM   GL+P++IT+  +L GFCK+G +  A D    M 
Sbjct: 308 GLCSEGKVE------EGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMT 361

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +R +E D V +  LI  + R GK+ +A  +   M K G+ P+  TY  +I  F ++GD +
Sbjct: 362 ERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWR 421

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +   LL EM+  G    V TYN L+  LC  G+++ A  LLD M ++G+ P+ +TYN ++
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 423 EGHCKHGN 430
           +G C  GN
Sbjct: 482 QGFCDKGN 489



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 170/337 (50%), Gaps = 12/337 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + PS    N L+  L    ++  A+  F    +R +     +FNT+I+G C+   L +  
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDD---AELLLHEMCERGLTPNDVIFTTLI 241
            +   ++  G+ P V TY++LI+G CK+    +    ++LL EM E G++P  V F  LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CKN       +   A ++ +EM   G+    +TY  L+ G C EG +E  + + +EM
Sbjct: 272 NGYCKNS------NTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM 325

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              G+  + + F  ++ GFC+ G + +A   +  M +  ++PD   Y ++ID + + G  
Sbjct: 326 EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKM 385

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    + + M   G  P V TYN L+ G  + G  ++A+ LLD M + G+  D +TYN+L
Sbjct: 386 EDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVL 445

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +   C  G      KL    SE GL  ++  Y +++ 
Sbjct: 446 IGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQ 482



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 6/295 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   + +     +  + E+   G + SV  +N L+  LC EGK+++   + +E    G
Sbjct: 270 LINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLG 329

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    ++F  ++ G CK   + +       M    + PDV  Y+ LI+   +  +++DA 
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAM 389

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M ++G++PN   +  LI G  +      +GD + A  ++DEM   G+  D +TY 
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSR------SGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +L+   C +G++  A+ +  EM + G+E +++ +  +I GFC  G +  A  +   M K 
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKC 503

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
             + +  TY + I  FC+ G       LL EM     +P   TY  +  G+ + G
Sbjct: 504 RKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 105/213 (49%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKGM + A+ +   +  R      ++ + L+ VY  LG ++DA+     + K        
Sbjct: 346 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 405

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
              CLI    R+       G   E+ + G    V  +NVL+  LC +G+++ A  + DE 
Sbjct: 406 TYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM 465

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + GL    +++NT+I G C   N+   + +++ ME    R +V TY+  I   C+  ++
Sbjct: 466 SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKM 525

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           D+A  LL+EM ++ L PN + + T+ +G  + G
Sbjct: 526 DEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/414 (29%), Positives = 205/414 (49%), Gaps = 70/414 (16%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++D+G SP+++V+N L+  LCK  K  +A+++FD  GK GL    V+++ LI+  C+   
Sbjct: 358 VVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGK 417

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD        M  +G++  VY Y++LING CK   +  AE  + EM  + L P  V +T+
Sbjct: 418 LDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTS 477

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           L+ G+C  G+I+ A                             G +++A K+ +EM    
Sbjct: 478 LMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWN 537

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI------------------------ 306
           + P+++TY ++++G+C+EGD+  A +  KEM ++GI                        
Sbjct: 538 VKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAK 597

Query: 307 -----------ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
                      EL+ + +T L+ GFCR GK+ EA  + +EM++ G+  D   Y ++ID  
Sbjct: 598 VFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGS 657

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K+ D K  F LLKEM   G  P    Y ++++   K G  K A  + D M++ G VP++
Sbjct: 658 LKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNE 717

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSEKGLVSD------YACYTSLVSKSSKYRQK 463
           +TY  ++ G CK G   + + L S+   VS       Y C+  +++K     QK
Sbjct: 718 VTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQK 771



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 209/426 (49%), Gaps = 33/426 (7%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEI 120
            D L+  YV    + D +  F+++      +P  R    L+  +++     + +  + ++
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +  G  P VY++  ++  LC+   +  A+ +       G     V +N LI+G CK + +
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   +K  + G  ++PDV TY  L+ GLCK    +    ++ EM     +P++   ++L
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338

Query: 241 IDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNGL 271
           ++G  K G+I+ A ++                              EA  + D M   GL
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGL 398

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P+ +TY+IL+D FC+ G L++AL    EM+  G++L    + +LI+G C+ G +  AE 
Sbjct: 399 RPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEG 458

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            + EM+   L+P   TYT ++  +C  G      RL  EM   G  P++ T+  L++GL 
Sbjct: 459 FMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLF 518

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           + G +++A  L + M +  V P+ +TYN+++EG+C+ G+     +F K  +EKG+V D  
Sbjct: 519 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTY 578

Query: 449 CYTSLV 454
            Y  L+
Sbjct: 579 SYRPLI 584



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 176/349 (50%), Gaps = 9/349 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L   +SPS    + L+  L K GKI++A  +       G+      +N LI+  CK +
Sbjct: 322 EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGR 381

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              E   L   M   G+RP+  TYS LI+  C+  +LD A   L EM + GL  +   + 
Sbjct: 382 KFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYN 441

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LI+GHCK       GD+  A   + EM    L P  +TYT L+ G+C +G +  AL + 
Sbjct: 442 SLINGHCK------FGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  +GI      FT L+SG  R G + +A ++  EM +  +KP+  TY ++I+ +C+ 
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEE 555

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD    F  LKEM   G +P   +Y  L++GLC  GQ   A + +D +       ++I Y
Sbjct: 556 GDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
             LL G C+ G  E+   +  E   +G+  D  CY  L+  S K++ ++
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRK 664



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 182/401 (45%), Gaps = 67/401 (16%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y E+   G +PS+Y F  L+  L + G I+DA  +F+E  +  +    V++N +I 
Sbjct: 491 ALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C+  ++ + F     M   G+ PD Y+Y  LI+GLC   +  +A++ +  + +     
Sbjct: 551 GYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCEL 610

Query: 233 NDVIFTTLIDGHCKNGRIDMA------------------------GDMKEARK-----IV 263
           N++ +T L+ G C+ G+++ A                        G +K   +     ++
Sbjct: 611 NEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLL 670

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM   GL PD + YT ++D   K GD + A  I   MI  G   + V +TA+I+G C+ 
Sbjct: 671 KEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKA 730

Query: 324 GKVVEAERMLREMLKV-----------------------------------GLKPDDATY 348
           G V EAE +  +M  V                                   GL  + ATY
Sbjct: 731 GFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATY 790

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            M+I  FC+ G  +    L+  M  DG  P   TY  ++N LC+   +K A  L ++M +
Sbjct: 791 NMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTE 850

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
            G+ PD + YN L+ G C  G      +L++E   +GL+ +
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 184/377 (48%), Gaps = 23/377 (6%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
           F LL +HY R      R ++D +         L F + I      P V   + L+H L K
Sbjct: 159 FDLLIQHYVR-----SRRVLDGV---------LVFKMMITKVSLLPEVRTLSALLHGLVK 204

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
                 A  +F++    G+      +  +I   C+ K+L     + + ME +G   ++  
Sbjct: 205 FRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVP 264

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ LI+GLCK+ ++ +A  +  ++  + L P+ V + TL+ G CK    ++  +M     
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEM----- 319

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            +DEM     +P +   + L++G  K G +E AL++ K ++  G+  +   + ALI   C
Sbjct: 320 -MDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLC 378

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           +G K  EAE +   M K+GL+P+D TY+++ID FC+ G   T    L EM   G   +V 
Sbjct: 379 KGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVY 438

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE- 440
            YN+L+NG CK G +  A   +  M++  + P  +TY  L+ G+C  G      +L  E 
Sbjct: 439 PYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEM 498

Query: 441 --KGLVSDYACYTSLVS 455
             KG+      +T+L+S
Sbjct: 499 TGKGIAPSIYTFTTLLS 515



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 150/298 (50%), Gaps = 10/298 (3%)

Query: 167 FNTLINGHCKAKN-LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           F+ LI  + +++  LD     K ++    + P+V T SAL++GL K      A  L ++M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G+ P+  I+T +I   C+        D+  A++++  M   G + + + Y +L+DG 
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCE------LKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGL 272

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK+  +  A+ I+K++  + ++ D V +  L+ G C+  +      M+ EML +   P +
Sbjct: 273 CKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSE 332

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
           A  + +++   K G  +    L+K +   G  P +  YNAL++ LCK  +   A +L D 
Sbjct: 333 AAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDR 392

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSKY 460
           M  +G+ P+D+TY+IL++  C+ G  +    F     + GL      Y SL++   K+
Sbjct: 393 MGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKF 450



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 58/111 (52%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   +   +N+L+   C++G+I++A  +       G+    +++ T+IN  C+  ++ + 
Sbjct: 782 GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKA 841

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
             L + M   G+RPD   Y+ LI+G C    +  A  L +EM  +GL PN+
Sbjct: 842 IELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNN 892


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 33/365 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I      +L    + F+ ++   G SP++  ++ ++  LCK G +K A  + +E  K G
Sbjct: 285 IITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG 344

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                 +  +LI+G CK    +  FRL   ++     +P+V+TY+A+I+G CKE +L  A
Sbjct: 345 WKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRA 404

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA-------------RKIVDE 265
           E+L   M E+GL PN   +TTLIDGHCK G    A ++ E                IVD 
Sbjct: 405 EMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDG 464

Query: 266 MCTNG----------------LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +C  G                +  D +TYTIL+   CK  D+  AL    +M K G + D
Sbjct: 465 LCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPD 524

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              +T LI+ FCR   + ++E++  E++K+GL P   TYT +I  +C+        +  +
Sbjct: 525 IHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQ 584

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P   +Y AL++GLCK  +L  A  L DTM+D G+ P ++T   L   +CK  
Sbjct: 585 KMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCK-- 642

Query: 430 NPEDF 434
             EDF
Sbjct: 643 -TEDF 646



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 170/315 (53%), Gaps = 10/315 (3%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           ++ A  VFDE   RG++  + ++  +I G+C+  N+ E  R    M   G   D  T + 
Sbjct: 225 VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTL 284

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           +I   C+++ ++ A    H++ + GL+PN + ++++I G CK G +      K+A ++++
Sbjct: 285 IITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSV------KQAFELLE 338

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRG 323
           EM  NG  P+  T+T L+ G CK+G  E A  +  ++I+      NV  +TA+ISG+C+ 
Sbjct: 339 EMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKE 398

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            K+  AE +   M + GL P+  TYT +ID  CK G+    + L++ M ++G  P   TY
Sbjct: 399 EKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTY 458

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSE 440
           N++++GLCK G+ + A  LL+T     +  D +TY IL+   CK  +      F     +
Sbjct: 459 NSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFK 518

Query: 441 KGLVSDYACYTSLVS 455
            G   D   YT+L++
Sbjct: 519 VGFQPDIHLYTTLIA 533



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 159/328 (48%), Gaps = 44/328 (13%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y P+V+ +  ++   CKE K+  A+M+F+   ++GL     ++ TLI+GHCKA N  + +
Sbjct: 381 YKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAY 440

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-------------------ELLLHEM 225
            L  +M   G  P+  TY+++++GLCK  R ++A                    +L+ E 
Sbjct: 441 ELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQ 500

Query: 226 CER----------------GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C+R                G  P+  ++TTLI   C+         MK++ K+ DE+   
Sbjct: 501 CKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNM------MKDSEKLFDEVIKL 554

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P K TYT ++ G+C+E  +  A+   ++M   G   D++++ ALISG C+  ++ EA
Sbjct: 555 GLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEA 614

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++   M+  GL P + T   +   +CK  D  +   +L+ +     +  V T   L+  
Sbjct: 615 RQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHT---LIRK 671

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           LC   ++  A +    +LD  V  D +T
Sbjct: 672 LCCEKKVALAALFFHKLLDKEVNVDRVT 699



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 120/286 (41%), Gaps = 76/286 (26%)

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMI 302
            C  G     G +KEA  ++ +M   GL    ++   I+L    +   +E A ++  EM 
Sbjct: 178 ECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVA-AEMRLVEYAGNVFDEMS 236

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF------- 355
            RG+  D+  +  +I G+CR G V+EA+R + EM++ G   D+AT T++I  F       
Sbjct: 237 ARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVN 296

Query: 356 ----------------------------CKNGDTKTGFRLLKEM---------------- 371
                                       CK G  K  F LL+EM                
Sbjct: 297 RAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLI 356

Query: 372 --------------------RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
                               RSD + P V TY A+++G CK  +L  A ML + M + G+
Sbjct: 357 HGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 416

Query: 412 VPDDITYNILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
           VP+  TY  L++GHCK GN     +  +L S +G   +   Y S+V
Sbjct: 417 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIV 462



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI    R N+   +   + E++  G +P+   +  ++   C+E K+  A   F +    G
Sbjct: 531 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 590

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
               ++S+  LI+G CK   LDE  +L   M   G+ P   T   L    CK      A 
Sbjct: 591 CAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAM 650

Query: 220 LLLHEM-----------------CERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           ++L  +                 CE+ +    + F  L+D      R+ +A 
Sbjct: 651 VILERLNKKLWIRTVHTLIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAA 702



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ + F+ ++ D+G +P    +  L+  LCKE ++ +A+ ++D    +GL    V+  TL
Sbjct: 577 SLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 636

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              +CK ++         ++E    +  + T   LI  LC E ++  A L  H++ ++ +
Sbjct: 637 TYEYCKTEDFASAM---VILERLNKKLWIRTVHTLIRKLCCEKKVALAALFFHKLLDKEV 693

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             + V          ++ +  +  D+ E
Sbjct: 694 NVDRVTLAAFNTACIESNKYALVSDLSE 721


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 175/316 (55%), Gaps = 6/316 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G SP+   F VL++  CK      A  VF+E  ++G+ A+ V++N+LI+G C   
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++EG +L   ME  G+ P+  T+  ++ G CK+  + DA   +  M ER + P+ VI+ 
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID + + G+++ A  +KEA      M   G++P+  TY  L+ GF + GD  SA  + 
Sbjct: 374 ILIDVYRRLGKMEDAMAVKEA------MAKKGISPNVTTYNCLITGFSRSGDWRSASGLL 427

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM ++GIE D V +  LI   C  G+V +A ++L EM +VGL+P+  TY  +I  FC  
Sbjct: 428 DEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDK 487

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ K+ + +   M        V TYN  +   C+ G++  AN LL+ MLD  +VP+ ITY
Sbjct: 488 GNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547

Query: 419 NILLEGHCKHGNPEDF 434
             + EG  + G   D 
Sbjct: 548 ETIKEGMMEKGYTPDI 563



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 9/308 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK---AKNLDE 182
           SP +Y FN ++  LC+ G+++ A  V  +    GL  +  ++N+LI+G+CK   A N+  
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L   M  +G+ P   T+  LING CK +    A  +  EM ++G+  + V + +LI 
Sbjct: 248 VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLIS 307

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C  G+++      E  K+++EM   GL+P++IT+  +L GFCK+G +  A D    M 
Sbjct: 308 GLCSEGKVE------EGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMT 361

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +R +E D V +  LI  + R GK+ +A  +   M K G+ P+  TY  +I  F ++GD +
Sbjct: 362 ERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWR 421

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +   LL EM+  G    V TYN L+  LC  G+++ A  LLD M ++G+ P+ +TYN ++
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 423 EGHCKHGN 430
           +G C  GN
Sbjct: 482 QGFCDKGN 489



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 170/336 (50%), Gaps = 12/336 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + PS    N L+  L    ++  A+  F    +R +     +FNT+I+G C+   L +  
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDD---AELLLHEMCERGLTPNDVIFTTLI 241
            +   ++  G+ P V TY++LI+G CK+    +    ++LL EM E G++P  V F  LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CKN       +   A ++ +EM   G+    +TY  L+ G C EG +E  + + +EM
Sbjct: 272 NGYCKNS------NTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM 325

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              G+  + + F  ++ GFC+ G + +A   +  M +  ++PD   Y ++ID + + G  
Sbjct: 326 EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKM 385

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    + + M   G  P V TYN L+ G  + G  ++A+ LLD M + G+  D +TYN+L
Sbjct: 386 EDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVL 445

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +   C  G      KL    SE GL  ++  Y +++
Sbjct: 446 IGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 6/295 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   + +     +  + E+   G + SV  +N L+  LC EGK+++   + +E    G
Sbjct: 270 LINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLG 329

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    ++F  ++ G CK   + +       M    + PDV  Y+ LI+   +  +++DA 
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAM 389

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M ++G++PN   +  LI G  +      +GD + A  ++DEM   G+  D +TY 
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSR------SGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +L+   C +G++  A+ +  EM + G+E +++ +  +I GFC  G +  A  +   M K 
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKC 503

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
             + +  TY + I  FC+ G       LL EM     +P   TY  +  G+ + G
Sbjct: 504 RKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 105/213 (49%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKGM + A+ +   +  R      ++ + L+ VY  LG ++DA+     + K        
Sbjct: 346 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 405

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
              CLI    R+       G   E+ + G    V  +NVL+  LC +G+++ A  + DE 
Sbjct: 406 TYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM 465

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + GL    +++NT+I G C   N+   + +++ ME    R +V TY+  I   C+  ++
Sbjct: 466 SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKM 525

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           D+A  LL+EM ++ L PN + + T+ +G  + G
Sbjct: 526 DEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 215/431 (49%), Gaps = 21/431 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKG  + A  +  +L   G  +     +AL++ Y     L  A  C+ L+      +P  
Sbjct: 191 KKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA--CWLLMM-----MPLM 243

Query: 96  GCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
           GCR        LI  +         L     ++  G S +++++ +L+  LCKEG+I DA
Sbjct: 244 GCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDA 303

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           + + DE   RG+  +  ++N +I+G+CK+  + +   +K++ME +G  PD +TY++LI G
Sbjct: 304 RGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYG 363

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   +LD+AE LL+    RG TP  + FT LI+G+CK  RID      +A ++   M +
Sbjct: 364 LCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERID------DALRVKSNMIS 416

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +    D   Y +L++   K+  L+ A +   EM   G+  + V +T++I G+C+ G V  
Sbjct: 417 SNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGA 476

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  + + M   G  P+  TY  +I    ++        L+ +M+ DG  P V  Y  L+ 
Sbjct: 477 ALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQ 536

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA 448
           G CK  +  NA  L + M   G+ PD+  YN+L +  CK G  E+       KG+V    
Sbjct: 537 GQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKV 596

Query: 449 CYTSLVSKSSK 459
            YTSLV   SK
Sbjct: 597 TYTSLVDGFSK 607



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 190/420 (45%), Gaps = 61/420 (14%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           +L L AY  +++ L+      +A++ L+ + +  G+  +  ++ SI++            
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFAN-GLAPNVVIYTSIIDG----------- 467

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
                Y  +G +  A++ F+L+          GC                          
Sbjct: 468 -----YCKVGMVGAALEVFKLMEHE-------GCH------------------------- 490

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
              P+ + +  L++ L ++ K+  A  +  +  + G+    +++ TLI G CK    D  
Sbjct: 491 ---PNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNA 547

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +ME +G+ PD   Y+ L + LCK  R ++A   L     +G+    V +T+L+DG
Sbjct: 548 FRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDG 604

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G  D A        ++++M   G   D  TY++LL   CK+  L  AL I  +M  
Sbjct: 605 FSKAGNTDFAA------VLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTV 658

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + VA+T +IS   + GK   A+ +  EM+  G KP   TYT+ I  +CK G  + 
Sbjct: 659 SGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEE 718

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ EM  DG  P V TY+  +NG    G +  A   L  M+D    P+  TY +LL+
Sbjct: 719 AEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLK 778



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 161/323 (49%), Gaps = 12/323 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + VL++ L K+ ++K+A+   +E    GL    V + ++I+G+CK   +     +  +M
Sbjct: 425 AYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLM 484

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G  P+ +TY +LI GL ++ +L  A  L+ +M E G+TP  + +TTLI G CK    
Sbjct: 485 EHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEF 544

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D       A ++ + M  NGL PD+  Y +L D  CK G  E A      ++++G+ L  
Sbjct: 545 D------NAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSF---LVRKGVVLTK 595

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +T+L+ GF + G    A  ++ +M+  G K D  TY++++   CK         +L +
Sbjct: 596 VTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQ 655

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    +  Y  +++ + K G+  +A  L + M+  G  P   TY + +  +CK G 
Sbjct: 656 MTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQ 715

Query: 431 PEDFDKLQSE---KGLVSDYACY 450
            E+ + L  E    G+  D   Y
Sbjct: 716 IEEAEHLIGEMERDGVTPDVVTY 738



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 183/381 (48%), Gaps = 10/381 (2%)

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           DAIQ  R +      +  +     +  ++R ++       Y  ++  G  P    +N ++
Sbjct: 127 DAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMI 186

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
              CK+G +  A   F    + G+     + N L+ G+C+  +L +   L  +M   G R
Sbjct: 187 MAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCR 246

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
            + Y+Y+ LI GL +   + +A +L+  M + G + N  ++T LI G CK GRI      
Sbjct: 247 RNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRI------ 300

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +AR ++DEM   G+ P   TY  ++DG+CK G ++ AL I+  M + G   D+  + +L
Sbjct: 301 HDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSL 360

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I G C GGK+ EAE +L   +  G  P   T+T +I+ +CK        R+   M S   
Sbjct: 361 IYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNC 419

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK---HGNPED 433
              ++ Y  L+N L K  +LK A   L+ M   G+ P+ + Y  +++G+CK    G   +
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALE 479

Query: 434 FDKLQSEKGLVSDYACYTSLV 454
             KL   +G   +   Y SL+
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLI 500



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 158/328 (48%), Gaps = 22/328 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G    +Y ++VL+  LCK+ K+ +A  + D+    G+    V++  +I+   K  
Sbjct: 620 KMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEG 679

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D    L + M  SG +P   TY+  I+  CK  ++++AE L+ EM   G+TP+ V + 
Sbjct: 680 KHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYH 739

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG--------- 289
             I+G    G +D A      +++VD  C     P+  TY +LL  F K           
Sbjct: 740 IFINGCGHMGYMDRA--FSTLKRMVDASC----EPNCWTYWLLLKHFLKMSLINAHYIDT 793

Query: 290 -------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
                  +L +   + + M+K G+    V ++++I+GFC+  ++ EA  +L  ML   + 
Sbjct: 794 SGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAIS 853

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P++  YTM+I C C           + +M   G  P +E+Y+ L+ GLC  G    A  L
Sbjct: 854 PNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSL 913

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGN 430
              +L +    +++ + IL +G  K G+
Sbjct: 914 FCDLLGMDYNHNEVAWKILNDGLLKAGH 941



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 22/288 (7%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ PS   + V +   CK G+I++A+ +  E  + G+    V+++  ING     
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMG 749

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYS---------ALIN-------GLCKENRLDDAELLL 222
            +D  F     M  +   P+ +TY          +LIN       G+     L+    LL
Sbjct: 750 YMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLL 809

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
             M + GL P  V ++++I G CK  R++      EA  ++D M    ++P++  YT+L+
Sbjct: 810 ERMMKHGLNPTVVTYSSIIAGFCKATRLE------EACVLLDHMLGKAISPNEEIYTMLI 863

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
              C        +    +MI+ G +    ++  LI G C  G    A+ +  ++L +   
Sbjct: 864 KCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYN 923

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            ++  + ++ D   K G      +LL  M +       E+Y+ L + +
Sbjct: 924 HNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 1/179 (0%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE-ILDYGYSPSVYVFNVLMHKLC 140
           + LL KH+ ++       +    M   +   T+   LE ++ +G +P+V  ++ ++   C
Sbjct: 773 YWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFC 832

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           K  ++++A ++ D    + +      +  LI   C  K   +     + M   G +P + 
Sbjct: 833 KATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLE 892

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
           +Y  LI GLC E   D A+ L  ++       N+V +  L DG  K G +D    +  A
Sbjct: 893 SYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAA 951



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 49/96 (51%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           + F  +++++G+ P +  ++ L+  LC EG    A+ +F +      +   V++  L +G
Sbjct: 876 VSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDG 935

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
             KA ++D   +L + M+    R D  +YS L + +
Sbjct: 936 LLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 198/395 (50%), Gaps = 30/395 (7%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL++V    G +++       + ++ F +    C  ++  +           F+  +L+ 
Sbjct: 78  ALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLET 137

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +   +  LCK   +K A  V +E   RGL     +  TLI+G CK    +  
Sbjct: 138 GTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERA 197

Query: 184 FRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           FRL   +++ S  +P+V+TY+ +I G C+E +L  AE+LL  M E+GL PN   +TTLI 
Sbjct: 198 FRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIG 257

Query: 243 GHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNP 273
           GHCK G  D A                             G ++EA K++    + GL  
Sbjct: 258 GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKF 317

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           DKITYTIL+   CK+G +  ALD+   M++ G   D  A+T+LIS +C+  ++ E+++  
Sbjct: 318 DKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFF 377

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            + L +GL P   TYT +I  +CK G +    R+ + M  +G      TY AL++GLCK 
Sbjct: 378 DKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKE 437

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +L+ A  L + MLD  +VP ++T   L   +C+ 
Sbjct: 438 SRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRR 472



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 177/350 (50%), Gaps = 12/350 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+  +G    V   N ++    + G    A+ VFD   + G+      F  L+   C+ 
Sbjct: 27  LEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALVVVCCRE 86

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             ++E   L + M   G   D  T + ++  LC++ R  D       M E G  PN V +
Sbjct: 87  GKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNY 146

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T  IDG CK   +      K+A  +++EM   GL P+  T+T L+DG CK G  E A  +
Sbjct: 147 TAWIDGLCKRRYV------KQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 200

Query: 298 RKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
             ++IK      NV  +T +I G+CR GK+  AE +L  M++ GLKP+  TYT +I   C
Sbjct: 201 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 260

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G     F L+ +M+ +G LP + TYNA+++G CK G+++ A  +L      G+  D I
Sbjct: 261 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKI 320

Query: 417 TYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           TY IL+  HCK G+     + FD++  E G   D   YTSL+S   + RQ
Sbjct: 321 TYTILITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLISTYCQQRQ 369



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 12/341 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +  YG+S       V++  LC++G+ KD    F    + G     V++   I+G CK + 
Sbjct: 99  MWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRY 158

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFT 238
           + + F +   M G G++P+VYT++ LI+GLCK    + A  L L  +      PN   +T
Sbjct: 159 VKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 218

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I G+C+ G+      +  A  ++  M   GL P+  TYT L+ G CK G  + A ++ 
Sbjct: 219 VMIGGYCREGK------LARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELM 272

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M + G   +   + A+I GFC+ GK+ EA ++LR     GLK D  TYT++I   CK 
Sbjct: 273 NKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQ 332

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       L   M  +G  P +E Y +L++  C+  Q++ +    D  L +G++P   TY
Sbjct: 333 GHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTY 392

Query: 419 NILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVS 455
             ++ G+CK G        F+++  + G  +D   Y +L+S
Sbjct: 393 TSMIAGYCKVGRSTLALRVFERM-VQNGCFADSITYGALIS 432



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 172/372 (46%), Gaps = 34/372 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID + +          +L+++    Y P+V+ + V++   C+EGK+  A+M+     ++
Sbjct: 184 LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ 243

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++ TLI GHCK  + D  F L + M+  G  P++YTY+A+I+G CK+ ++ +A
Sbjct: 244 GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 303

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD----------------------- 255
             +L     +GL  + + +T LI  HCK G I  A D                       
Sbjct: 304 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLIST 363

Query: 256 ------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 M+E++K  D+    GL P K TYT ++ G+CK G    AL + + M++ G   D
Sbjct: 364 YCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFAD 423

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           ++ + ALISG C+  ++ EA+ +   ML   L P + T   +   +C+   T     +L 
Sbjct: 424 SITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLD 483

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +        V T + ++  L   G +  A++ L  +LD     D  TY   +   C   
Sbjct: 484 RLDKRQQ---VHTVDVVVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINS-CYEN 539

Query: 430 NPEDFDKLQSEK 441
           N        SEK
Sbjct: 540 NRYALASEMSEK 551



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 121/266 (45%), Gaps = 16/266 (6%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +   +A++  +   G + +A +  R+      +        LI    +    T  L 
Sbjct: 281 LPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALD 340

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +  +++ G  P +  +  L+   C++ +++++Q  FD+    GL  T  ++ ++I G+C
Sbjct: 341 LFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYC 400

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K        R+   M  +G   D  TY ALI+GLCKE+RL++A+ L   M ++ L P +V
Sbjct: 401 KVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEV 460

Query: 236 IFTTLIDGHCKNGRIDMAG---DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
              TL   +C+  +  +A    D  + R+ V             T  +++      GD++
Sbjct: 461 TRVTLTFEYCRREKTSIAVSVLDRLDKRQQVH------------TVDVVVRKLSALGDVD 508

Query: 293 SALDIRKEMIKRGIELDNVAFTALIS 318
           +A    K+++     +D+  +T  I+
Sbjct: 509 AASLFLKKVLDEDYAVDHATYTGFIN 534


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 30/343 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+  +L+ G  P+V  +   +  LCK   +K A  V +E   RGL     +  TLI+G C
Sbjct: 238 FFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLC 297

Query: 176 KAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           K    +  FRL   +++ S  +P+V+TY+ +I G C+E +L  AE+LL  M E+GL PN 
Sbjct: 298 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNT 357

Query: 235 VIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDE 265
             +TTLI GHCK G  D A                             G ++EA K++  
Sbjct: 358 NTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRM 417

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
             + GL  DKITYTIL+   CK+G +  ALD+   M++ G   D  A+T+LIS +C+  +
Sbjct: 418 ATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQ 477

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + E+++   + L +GL P   TYT +I  +CK G +    R+ + M  +G      TY A
Sbjct: 478 MEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGA 537

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           L++GLCK  +L+ A  L + MLD  +VP ++T   L   +C+ 
Sbjct: 538 LISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRR 580



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 178/350 (50%), Gaps = 12/350 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+  +G    V   N ++    + G    A+ VFD   + G+     SF  L+   C+ 
Sbjct: 135 LEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCRE 194

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             ++E   L + M   G   D  T + ++  LC++ R  D       M E G  PN V +
Sbjct: 195 GKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNY 254

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T  IDG CK   +      K+A  +++EM   GL P+  T+T L+DG CK G  E A  +
Sbjct: 255 TAWIDGLCKRRYV------KQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 308

Query: 298 RKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
             ++IK      NV  +T +I G+CR GK+  AE +L  M++ GLKP+  TYT +I   C
Sbjct: 309 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 368

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G     F L+ +M+ +G LP + TYNA+++G CK G+++ A  +L      G+  D I
Sbjct: 369 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKI 428

Query: 417 TYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           TY IL+  HCK G+     + FD++  E G   D   YTSL+S   + RQ
Sbjct: 429 TYTILITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLISTYCQQRQ 477



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 211/463 (45%), Gaps = 15/463 (3%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFAS-ILETRGTHLPG 59
           P  R  +  Y T     VA      A +++  +V+  G        A  +LE R   LP 
Sbjct: 85  PDLRRLMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPL 144

Query: 60  LVLDALMIVYVDL--GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
            V  A  ++ V L  G    A + F  + +       R  R L+    R           
Sbjct: 145 CVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALL 204

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             +  YG+S       V++  LC++G+ KD    F    + G     V++   I+G CK 
Sbjct: 205 AAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKR 264

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVI 236
           + + + F +   M G G++P+VYT++ LI+GLCK    + A  L L  +      PN   
Sbjct: 265 RYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHT 324

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T +I G+C+ G+      +  A  ++  M   GL P+  TYT L+ G CK G  + A +
Sbjct: 325 YTVMIGGYCREGK------LARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 378

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +M + G   +   + A+I GFC+ GK+ EA ++LR     GLK D  TYT++I   C
Sbjct: 379 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 438

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G       L   M  +G  P +E Y +L++  C+  Q++ +    D  L +G++P   
Sbjct: 439 KQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQ 498

Query: 417 TYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVS 455
           TY  ++ G+CK G        F+++  + G  +D   Y +L+S
Sbjct: 499 TYTSMIAGYCKVGRSTLALRVFERM-VQNGCFADSITYGALIS 540



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 172/372 (46%), Gaps = 34/372 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID + +          +L+++    Y P+V+ + V++   C+EGK+  A+M+     ++
Sbjct: 292 LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ 351

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++ TLI GHCK  + D  F L + M+  G  P++YTY+A+I+G CK+ ++ +A
Sbjct: 352 GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 411

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD----------------------- 255
             +L     +GL  + + +T LI  HCK G I  A D                       
Sbjct: 412 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLIST 471

Query: 256 ------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 M+E++K  D+    GL P K TYT ++ G+CK G    AL + + M++ G   D
Sbjct: 472 YCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFAD 531

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           ++ + ALISG C+  ++ EA+ +   ML   L P + T   +   +C+   T     +L 
Sbjct: 532 SITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLD 591

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +        V T + ++  L   G +  A++ L  +LD     D  TY   +   C   
Sbjct: 592 RLDKRQQ---VHTVDVVVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINS-CYEN 647

Query: 430 NPEDFDKLQSEK 441
           N        SEK
Sbjct: 648 NRYALASEMSEK 659



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 121/266 (45%), Gaps = 16/266 (6%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +   +A++  +   G + +A +  R+      +        LI    +    T  L 
Sbjct: 389 LPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALD 448

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +  +++ G  P +  +  L+   C++ +++++Q  FD+    GL  T  ++ ++I G+C
Sbjct: 449 LFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYC 508

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K        R+   M  +G   D  TY ALI+GLCKE+RL++A+ L   M ++ L P +V
Sbjct: 509 KVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEV 568

Query: 236 IFTTLIDGHCKNGRIDMAG---DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
              TL   +C+  +  +A    D  + R+ V             T  +++      GD++
Sbjct: 569 TRVTLTFEYCRREKTSIAVSVLDRLDKRQQVH------------TVDVVVRKLSALGDVD 616

Query: 293 SALDIRKEMIKRGIELDNVAFTALIS 318
           +A    K+++     +D+  +T  I+
Sbjct: 617 AASLFLKKVLDEDYAVDHATYTGFIN 642


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 170/332 (51%), Gaps = 10/332 (3%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+   +N ++  LCKE ++ +A  +      +G+     +FN+LI G C + N      
Sbjct: 375 SPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMD 434

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M+G G RPD +TY+ LI+ LC   +L++A  LL EM   G   N VI+ TLIDG C
Sbjct: 435 LFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFC 494

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           KN RI+      EA +I DEM   G++ D +TY  L+DG CK   +E A  +  +MI  G
Sbjct: 495 KNKRIE------EAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG 548

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D   + +L++ FC+ G + +A  +++ M   G  PD  TY  +I   CK G  +   
Sbjct: 549 LRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVAS 608

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           RLL+ ++  G +     YN ++  L K  +   A  L   MLD    PD ITY I+  G 
Sbjct: 609 RLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGL 668

Query: 426 CKHGNP----EDFDKLQSEKGLVSDYACYTSL 453
           C  G P     DF     E+G + +++ +  L
Sbjct: 669 CNGGGPIGEAVDFTVEMIERGNIPEFSSFVML 700



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 219/463 (47%), Gaps = 25/463 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
            +L   A+S+MV   + H + +   ++L   + K      A L    + + G        
Sbjct: 184 LKLVESAHSSMVRRRIRHDVST--FNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTF 241

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC-------LIDRMMRTNLPTVTLG 115
             +M  Y++ G LD A++    + ++       GC C       LI+   +       L 
Sbjct: 242 TTIMQGYIEGGNLDGALRIKEQMVEY-------GCPCTDVTVNVLINGFCKQGRIDQALS 294

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E +  G+ P  + +N L++ LCK G  K A  V D     GL     ++N+LI+G C
Sbjct: 295 FIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLC 354

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   ++E  ++   M      P+  TY+A+I+ LCKENR+D+A  +   +  +G+ P+  
Sbjct: 355 KLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVC 414

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F +LI G C      ++ + K A  + +EM   G  PD+ TY +L+D  C    LE AL
Sbjct: 415 TFNSLIQGLC------LSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEAL 468

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ KEM   G   + V +  LI GFC+  ++ EAE +  EM   G+  D  TY  +ID  
Sbjct: 469 NLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGL 528

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK+   +   +L+ +M  +G  P   TYN+L+   CK G +K A  ++ TM   G  PD 
Sbjct: 529 CKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDI 588

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           +TY  L+ G CK G  +   +L      KG+V     Y  ++ 
Sbjct: 589 VTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQ 631



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 171/335 (51%), Gaps = 10/335 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + PS  V+  ++ KL K G  +  + V +E    G       F   +  + K +  DE  
Sbjct: 93  FVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVV 152

Query: 185 RLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +  VME    ++PD   Y+ L+N L   N+L   E     M  R +  +   F  LI  
Sbjct: 153 GIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKA 212

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      A  ++ A  +++EM + GL+PD+ T+T ++ G+ + G+L+ AL I+++M++
Sbjct: 213 LCK------AHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVE 266

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G    +V    LI+GFC+ G++ +A   ++E +  G +PD  TY  +++  CK G  K 
Sbjct: 267 YGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKH 326

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              ++  M   G  P + TYN+L++GLCK G+++ A  +LD M+     P+ +TYN ++ 
Sbjct: 327 AMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIIS 386

Query: 424 GHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
             CK    +   +  +L + KG++ D   + SL+ 
Sbjct: 387 SLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQ 421



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 127/280 (45%), Gaps = 42/280 (15%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  + E+   G  P  + +N+L+  LC   K+++A  +  E    G     V +NTLI+
Sbjct: 432 AMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLID 491

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK K ++E   +   ME  G+  D  TY+ LI+GLCK  R++DA  L+ +M   GL P
Sbjct: 492 GFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRP 551

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   + +L+   CK G      D+K+A  IV  M ++G NPD +TY  L+ G CK G ++
Sbjct: 552 DKFTYNSLLTHFCKTG------DIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQ 605

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY---- 348
            A  + + +  +G+ L   A+  +I    +  +  EA R+ REML     PD  TY    
Sbjct: 606 VASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVY 665

Query: 349 --------------------------------TMVIDCFC 356
                                            M+ +  C
Sbjct: 666 RGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLC 705


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 202/391 (51%), Gaps = 11/391 (2%)

Query: 75  LDDAIQCFRLLRK---HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           L D +    +LRK      +        ++DR+ +          + E+ + G  P+V  
Sbjct: 58  LGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLT 117

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N ++   C  GK  DA+ +  +  +R +    V+F+ LIN   K   +     L   M 
Sbjct: 118 YNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREML 177

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR-- 249
              + P   TYS++I+G CK +RL+DA+ +   M  +G +P+ +   TLIDG C+  R  
Sbjct: 178 RRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHL 237

Query: 250 ---IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G++  A+ +  EM +NG++PD +T   LL G C+ G LE AL++ K   K  +
Sbjct: 238 IHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKM 297

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +LD      +I+G C+G KV EA  +   +   G++ D  TY ++I  F K G+      
Sbjct: 298 DLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAED 357

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +  EM   G +P+  TYN++++G CK  +L+ A  ++D+M+  G  PD +T++ L++G+C
Sbjct: 358 IYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYC 417

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K G  +D  +L SE   +GLV+D   Y +L+
Sbjct: 418 KAGRVDDGLELFSEMCQRGLVADTITYNALI 448



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 175/348 (50%), Gaps = 40/348 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++    P V  F+ L++   KEGK+  A+ ++ E  +R +  T ++++++I+G CK  
Sbjct: 140 DMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHS 199

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR-----------LDDAELLLHEMCE 227
            L++   +  +M   G  PD+ T + LI+G C+  R           ++ A+ L  EM  
Sbjct: 200 RLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMIS 259

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KE 258
            G++P+ V   TL+ G C+NG+++ A +M                              E
Sbjct: 260 NGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDE 319

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A  + + +  NG+  D +TY IL+  F KEG+   A DI  EM+ +GI    V + +++ 
Sbjct: 320 AWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVD 379

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           GFC+  ++ EA +M+  M+  G  PD  T++ +I  +CK G    G  L  EM   G + 
Sbjct: 380 GFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVA 439

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
              TYNAL++G CK G L  A  + + M+  GV PD IT+  +L G C
Sbjct: 440 DTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLC 487



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 184/350 (52%), Gaps = 22/350 (6%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G   +V  F  LM+ LC+EG++  A  + D   + G    AV++ T++NG CK  +
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 +   M+ S ++ +V  YSA+++ LCK+     A+ +  EM E+G+ PN + +  
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +IDG+C  G+        +A +++ +M    ++PD +T++ L++ F KEG +  A ++ +
Sbjct: 121 MIDGYCSYGK------WSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYR 174

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID-C---- 354
           EM++R I    + ++++I GFC+  ++ +A+ M   M+  G  PD  T   +ID C    
Sbjct: 175 EMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAK 234

Query: 355 ------FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
                 FC+ G+      L +EM S+G  P + T N L+ GLC++G+L+ A  +      
Sbjct: 235 RHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQK 294

Query: 409 LGVVPDDITYNILLEGHCKHGNP--EDFDKLQS--EKGLVSDYACYTSLV 454
             +  D  T NI++ G CK GN   E +D   S    G+ +D   Y  L+
Sbjct: 295 SKMDLDTATCNIIINGMCK-GNKVDEAWDLFNSLPVNGVETDVVTYNILI 343



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 150/278 (53%), Gaps = 6/278 (2%)

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           R  R LI    +     V    + E++  G SP +   N L+  LC+ GK++ A  +F  
Sbjct: 232 RAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKV 291

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
           F K  +     + N +ING CK   +DE + L + +  +G+  DV TY+ LI    KE  
Sbjct: 292 FQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGN 351

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
              AE +  EM  +G+ P+ V + +++DG CK  R++      EAR++VD M + G +PD
Sbjct: 352 FLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLE------EARQMVDSMVSEGCSPD 405

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +T++ L+ G+CK G ++  L++  EM +RG+  D + + ALI GFC+ G +  A+ +  
Sbjct: 406 VVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFE 465

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           EM+  G+ PD  T+  ++   C   + + G  +L++++
Sbjct: 466 EMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQ 503



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 142/294 (48%), Gaps = 17/294 (5%)

Query: 124 GYSPSVYVFNVLM-----------HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           G SP +   N L+           H  C+ G +  AQ +F E    G+    V+ NTL+ 
Sbjct: 215 GCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLA 274

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   L++   +  V + S M  D  T + +ING+CK N++D+A  L + +   G+  
Sbjct: 275 GLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVET 334

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +  LI      G     G+   A  I  EM   G+ P  +TY  ++DGFCK+  LE
Sbjct: 335 DVVTYNILI------GVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLE 388

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +   M+  G   D V F+ LI G+C+ G+V +   +  EM + GL  D  TY  +I
Sbjct: 389 EARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALI 448

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             FCK GD      + +EM S G  P   T+ +++ GLC   +L+    +L+ +
Sbjct: 449 HGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 183/333 (54%), Gaps = 12/333 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           P+V  FN L++   + G++ +A   V+D+    G      +F+TL+NG CK         
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALE 403

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M+  G +P++ TY+ LI+G CK+ +L++A L+L EM  +G + N V +  LI   C
Sbjct: 404 LVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALC 463

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G+I  A DM        EM + G  PD  T+  L+ G C+  ++E AL + ++M+  G
Sbjct: 464 KHGKIHEALDM------FGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEG 517

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  ++V F  LI  F R G++ EA +++ +ML  G   D+ TY  +I   CK G  + G 
Sbjct: 518 VIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGL 577

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L +EM   G  P++ T N L+NG C  G++ NA   +  M+  G  PD +TYN L+ G 
Sbjct: 578 GLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL 637

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           CK G  ++    F+KLQ+E G+  D   Y +L+
Sbjct: 638 CKRGRIQEALNLFEKLQAE-GIQPDSITYNTLI 669



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 6/309 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  + +L+   CK+G++++A ++  E   +G     V +N LI+  CK   + E 
Sbjct: 412 GCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEA 471

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G +PD++T+++LI GLC+ + ++DA  L  +M   G+  N V F TLI  
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHA 531

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G I      +EA K+V++M   G   D+ITY  L+   CK G +E  L + +EMI+
Sbjct: 532 FLRRGEI------QEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIR 585

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+    +    LI+GFC  GKV  A   +R+M+  G  PD  TY  +I+  CK G  + 
Sbjct: 586 KGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQE 645

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L ++++++G  P   TYN L+  LC+ G   +A  LL   ++ G VP+D+T+NIL+ 
Sbjct: 646 ALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVY 705

Query: 424 GHCKHGNPE 432
              K  N E
Sbjct: 706 NFGKQSNSE 714



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 235/490 (47%), Gaps = 60/490 (12%)

Query: 8   HAYSTMVHFLVAHKMHSQAR----DLLHLIVSKKGMGSSASLFASILETRG-THLPGLVL 62
           H++S  V++L+  K+ + A     D L L + ++G+    SLF  I++  G   LPG   
Sbjct: 102 HSFS--VYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPG--- 156

Query: 63  DALMIVYVDLGFLDDAIQCFRLL---RKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYL 118
                            Q  RLL   +  Y   P+ R    ++D ++  N P+V    + 
Sbjct: 157 -----------------QATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFY 199

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G SP+ Y F ++M  LC   ++ +A ++  +  K G    ++ + TLI+   K  
Sbjct: 200 DMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRD 259

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  +L   M   G  PDV T++ +I G C+ NR+ +   L+  M  +G TPND+ + 
Sbjct: 260 RVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYG 319

Query: 239 TLIDGHCKNGRIDMA-------------------------GDMKEARKIV-DEMCTNGLN 272
            L+ G CK  RID A                         G + EA   V D+M  NG  
Sbjct: 320 YLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYV 379

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD  T++ L++G CK+G   SAL++  +M  +G + +   +T LI GFC+ G++ EA  +
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI 439

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           LREML  G   +   Y  +I   CK+G       +  EM S G  P + T+N+L+ GLC+
Sbjct: 440 LREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCR 499

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
             ++++A  L   M+  GV+ + +T+N L+    + G  ++  KL ++   +G   D   
Sbjct: 500 VDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEIT 559

Query: 450 YTSLVSKSSK 459
           Y  L+    K
Sbjct: 560 YNGLIKALCK 569



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 163/328 (49%), Gaps = 8/328 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           KKG+  SA    + ++ +G   P L    ++I  +   G L++A    R +    F +  
Sbjct: 394 KKGLFGSALELVNDMDAKGCK-PNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNT 452

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
            G   LI  + +       L  + E+   G  P ++ FN L+  LC+  +++DA  ++ +
Sbjct: 453 VGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRD 512

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
               G+ A +V+FNTLI+   +   + E  +L + M   G   D  TY+ LI  LCK   
Sbjct: 513 MVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGA 572

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           ++    L  EM  +GLTP+ +    LI+G C       AG +  A + + +M   G +PD
Sbjct: 573 VEKGLGLFEEMIRKGLTPSIITCNILINGFCT------AGKVHNALEFMRDMIHRGFSPD 626

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY  L++G CK G ++ AL++ +++   GI+ D++ +  LI   CR G   +A  +L 
Sbjct: 627 IVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLY 686

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             ++ G  P+D T+ +++  F K  +++
Sbjct: 687 RGVENGFVPNDVTWNILVYNFGKQSNSE 714


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 189/367 (51%), Gaps = 30/367 (8%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  ++  +    L    + ++ +++D G+ P++  F  L+  LCK+G IK A  + +E  
Sbjct: 255 CTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMV 314

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRL 215
           + G      +   LI+G CK    ++ FRL   ++     +P+V+TY+++I G CKE++L
Sbjct: 315 RNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKL 374

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR-------IDMAGD------------- 255
           + AE+L   M E+GL PN   +TTLI+GHCK G        +++ GD             
Sbjct: 375 NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAA 434

Query: 256 ---------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                      EA +++++  + GL  D +TYTIL+   CK+ D+  AL     M K G 
Sbjct: 435 IDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGF 494

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E D      LI+ FCR  K+ E+ER+ + ++ +GL P   TYT +I C+CK GD     +
Sbjct: 495 EADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALK 554

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
               M+  G +P   TY +L++GLCK   +  A  L + M+D G+ P ++T   L   +C
Sbjct: 555 YFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYC 614

Query: 427 KHGNPED 433
           K  +  +
Sbjct: 615 KRNDSAN 621



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 170/334 (50%), Gaps = 7/334 (2%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           RC++            +G  +++ + G +PS    N ++    + G I+ A+ VFDE   
Sbjct: 151 RCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSV 210

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           RG+   + S+  ++ G  +   + E  R  + M   G  PD  T + ++  LC+   ++ 
Sbjct: 211 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 270

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A     +M + G  PN + FT+LIDG CK G I      K+A ++++EM  NG  P+  T
Sbjct: 271 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSI------KQAFEMLEEMVRNGWKPNVYT 324

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREM 336
           +T L+DG CK G  E A  +  ++++      NV  +T++I G+C+  K+  AE +   M
Sbjct: 325 HTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRM 384

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + GL P+  TYT +I+  CK G     + L+  M  +G +P + TYNA ++ LCK  + 
Sbjct: 385 KEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRA 444

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             A  LL+     G+  D +TY IL++  CK  +
Sbjct: 445 PEAYELLNKAFSCGLEADGVTYTILIQEQCKQND 478



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 155/322 (48%), Gaps = 32/322 (9%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y P+V+ +  ++   CKE K+  A+M+F    ++GL     ++ TLINGHCKA +    +
Sbjct: 354 YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAY 413

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L ++M   G  P++YTY+A I+ LCK++R  +A  LL++    GL  + V +T LI   
Sbjct: 414 ELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQ 473

Query: 245 CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
           CK   I+ A                               MKE+ ++   + + GL P K
Sbjct: 474 CKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTK 533

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TYT ++  +CKEGD++ AL     M + G   D+  + +LISG C+   V EA ++   
Sbjct: 534 ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEA 593

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M+  GL P + T   +   +CK  D+     LL+ +  D  L  + T   L+  LC   +
Sbjct: 594 MIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPL--DKKL-WIRTVRTLVRKLCSEKK 650

Query: 396 LKNANMLLDTMLDLGVVPDDIT 417
           +  A +    +L+     D +T
Sbjct: 651 VGVAALFFQKLLEKDSSADRVT 672



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G + EA  +V +M   GL P  IT   +L+   + G +E A ++  EM  RG+  D+ ++
Sbjct: 161 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 220

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G  R GK+ EA+R L  M++ G  PD+AT T+++   C+NG         ++M  
Sbjct: 221 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 280

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P +  + +L++GLCK G +K A  +L+ M+  G  P+  T+  L++G CK G  E 
Sbjct: 281 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEK 340

Query: 434 ----FDKLQSEKGLVSDYACYTSLV 454
               F KL        +   YTS++
Sbjct: 341 AFRLFLKLVRSDTYKPNVHTYTSMI 365



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 10/232 (4%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           ++ A+  F  + K  F    R    LI    R      +   +  ++  G  P+   +  
Sbjct: 479 INQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTS 538

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++   CKEG I  A   F    + G    + ++ +LI+G CK   +DE  +L   M   G
Sbjct: 539 MISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRG 598

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + P   T   L    CK N   +A +LL  + ++ L    V   TL+   C   ++ +A 
Sbjct: 599 LSPPEVTRVTLAYEYCKRNDSANAMILLEPL-DKKLWIRTV--RTLVRKLCSEKKVGVAA 655

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                     ++     + D++T        C E    + +    E I RG+
Sbjct: 656 ------LFFQKLLEKDSSADRVTLAAFTTA-CSESGKNNLVTDLTERISRGV 700



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 351 VIDCFCKN----GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           V+ C  +N    G       ++ +M++ G  P+  T N ++    + G ++ A  + D M
Sbjct: 149 VMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEM 208

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYA---------CYTSLV 454
              GVVPD  +Y +++ G  + G  ++ D+  +   ++G + D A         C   LV
Sbjct: 209 SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLV 268

Query: 455 SKSSKYRQK 463
           +++  Y +K
Sbjct: 269 NRAIWYFRK 277


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 38/366 (10%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR-LKSV 189
            FN+++  LC  GK   A     E  ++     AV++NT+I G C    +      ++ +
Sbjct: 118 TFNIMLRHLCATGKPVRAL----ELLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREM 173

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNG 248
            E  G+ PD YTY+ LI+G CK  R++DA  +  EM  +G + P+ V++  LI G+C  G
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVG 233

Query: 249 RIDMAGDMKE-----------------------------ARKIVDEMCTNGLNPDKITYT 279
           ++D+A   +E                             A  +++EM  NG +PD  TY 
Sbjct: 234 KLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYN 293

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL++G+CKEG+ + AL++ +EM ++G+    V +T+LI  F R G+V E +R+    +K 
Sbjct: 294 ILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKK 353

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++PD   Y  +I+  C  GD +  + ++ EM      P   TYN LM G C  G+L  A
Sbjct: 354 GIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEA 413

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
             L+D M   G+ PD ++YN L+ G+   G+ +D  +++ E   KG       Y +L+  
Sbjct: 414 RTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQG 473

Query: 457 SSKYRQ 462
             K RQ
Sbjct: 474 LCKIRQ 479



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 166/331 (50%), Gaps = 30/331 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDE 182
           G +P  Y +  L+   CK G+++DA  VFDE   +G +  +AV +N LI G+C    LD 
Sbjct: 178 GIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDV 237

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             + +  M   G+   V TY+ L++ L  + R  DA  +L EM + G +P+   +  LI+
Sbjct: 238 ALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILIN 297

Query: 243 GHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNP 273
           G+CK G    A                             G ++E  ++ +     G+ P
Sbjct: 298 GYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRP 357

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D + Y  L++  C  GD+E A +I  EM K+ I  D++ +  L+ GFC  G++ EA  ++
Sbjct: 358 DVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLI 417

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EM K G++PD  +Y  +I  +   GD K   R+  EM   G  P + TYNAL+ GLCK 
Sbjct: 418 DEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKI 477

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            Q  +A  L+  M+  G+ PDD TY  L+EG
Sbjct: 478 RQGDDAENLMKEMVAKGITPDDSTYISLIEG 508



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 162/328 (49%), Gaps = 7/328 (2%)

Query: 69  YVDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +  +G ++DA++ F  +L K      A     LI          V L +  +++  G + 
Sbjct: 193 WCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAM 252

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+LMH L  + +  DA  V +E  K G      ++N LING+CK  N  +   + 
Sbjct: 253 TVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVF 312

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+R    TY++LI    ++ ++ + + L +   ++G+ P+ V++  LI+ HC  
Sbjct: 313 EEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTG 372

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G      DM+ A +I+ EM    + PD +TY  L+ GFC  G L+ A  +  EM KRGI+
Sbjct: 373 G------DMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQ 426

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V++  LISG+   G + +A R+  EM+  G  P   TY  +I   CK         L
Sbjct: 427 PDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENL 486

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +KEM + G  P   TY +L+ GL    +
Sbjct: 487 MKEMVAKGITPDDSTYISLIEGLTTEDE 514



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 136/323 (42%), Gaps = 78/323 (24%)

Query: 39  MGSSASLFASILETRGTHLPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           M  +  +F  +L T+G   P  V+ +AL+  Y D+G LD A+Q    + +    +     
Sbjct: 199 MEDAVKVFDEML-TKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATY 257

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             L+  +      +       E+   G+SP V+ +N+L++  CKEG  K A  VF+E  +
Sbjct: 258 NLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQ 317

Query: 158 RGLHATAVSF-----------------------------------NTLINGHCKAKNLDE 182
           +G+ ATAV++                                   N LIN HC   +++ 
Sbjct: 318 KGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMER 377

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            + + + ME   + PD  TY+ L+ G C   RLD+A  L+ EM +RG+ P+ V + TLI 
Sbjct: 378 AYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLIS 437

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNP----------------------------- 273
           G+       M GD+K+A ++ DEM   G NP                             
Sbjct: 438 GY------SMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMV 491

Query: 274 ------DKITYTILLDGFCKEGD 290
                 D  TY  L++G   E +
Sbjct: 492 AKGITPDDSTYISLIEGLTTEDE 514


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 226/487 (46%), Gaps = 60/487 (12%)

Query: 22  MHSQARDLLHLIVSKKGMGSSASLFASILE---TRGTHLPGLVLDALMIVYVDLGFLDDA 78
            H + R +  LI+ K    ++  L+  +L+        +       L+  Y + G  + A
Sbjct: 88  WHLRCRTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKA 147

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           ++ F L+R    +        ++  ++R     + L  Y ++L    +P V  + +L+H 
Sbjct: 148 VESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHG 207

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
           LCK  K +DA ++FDE   RG+    + ++ +++G C+AK + +  RL S M  SG   D
Sbjct: 208 LCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRD 267

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           + TY+ L+NG CK   LDDA  LL  + + G     + +  LI+G  +  R +      E
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYE------E 321

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A     +M    + PD + YTI++ G  +EG +  AL +  EM +RG+  D + + ALI 
Sbjct: 322 AHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIK 381

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           GFC  G + EAE +  E+ K    P++ TY+++I   CKNG       + KEM   G LP
Sbjct: 382 GFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLP 441

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTM-------------------------------- 406
           +V T+N+L+NGLCK  +L+ A +L   M                                
Sbjct: 442 SVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERL 501

Query: 407 ----------------LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
                           +D GV+PD  TYNIL+ G CK GN     KL  E   KG + D 
Sbjct: 502 CESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDS 561

Query: 448 ACYTSLV 454
             Y +L+
Sbjct: 562 VTYGTLI 568



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 161/334 (48%), Gaps = 7/334 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G+LDDA    +LL K    +   G  CLI+ + R         +Y ++L     P V ++
Sbjct: 282 GYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLY 341

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            +++  L +EG++ +A  +  E  +RGL    + +N LI G C    LDE   L+  +  
Sbjct: 342 TIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISK 401

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P+ +TYS LI G+CK   ++ A+ +  EM + G  P+ V F +LI+G CK  R++ 
Sbjct: 402 HDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEE 461

Query: 253 AGDMKEARKIVDE-----MCTNGLNP--DKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           A  +    +IV +       + G +   D  +  ++++  C+ G +  A  +  +++  G
Sbjct: 462 ARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSG 521

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D   +  LI+GFC+ G +  A ++ +EM   G  PD  TY  +ID   + G  +   
Sbjct: 522 VLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDAL 581

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + ++M   G +P   TY  +M   C+   +  A
Sbjct: 582 EIFEQMVKKGCVPESSTYKTIMTWSCRENNISLA 615



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 159/397 (40%), Gaps = 72/397 (18%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL-LRKHYFRI 92
           +S++G  + A      +  RG     +  +AL+  + D+G+LD+A +  RL + KH    
Sbjct: 348 LSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA-ESLRLEISKHDCFP 406

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM-- 150
                  LI  M +  L       + E+   G  PSV  FN L++ LCK  ++++A++  
Sbjct: 407 NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLF 466

Query: 151 ---------------------VFD-------------------------EFGKRGLHATA 164
                                VFD                         +    G+    
Sbjct: 467 YQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDI 526

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            ++N LING CK  N++  F+L   M+  G  PD  TY  LI+GL +  R +DA  +  +
Sbjct: 527 RTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQ 586

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGD--MKEARKIVDEMCTNGLNPDKITYTILL 282
           M ++G  P    + T++   C+   I +A    MK  R         G   +K+   ++ 
Sbjct: 587 MVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDF------RGWEDEKV--RVVA 638

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           + F  E +L++A+    EM  +    D   +T  + G  +  +  EA  +   +    + 
Sbjct: 639 ESFDNE-ELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFSVLKDFKMN 697

Query: 343 PDDATYTMVID--CFCKNGDT---------KTGFRLL 368
              A+  M+I   C  +N D          + GFRL+
Sbjct: 698 ISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLM 734


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 201/394 (51%), Gaps = 30/394 (7%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL++     G  ++A      + +  F + +  C  ++    R        G +  +++ 
Sbjct: 186 ALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEM 245

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +   +  LCK G +K A  V +E   +GL     +  +LI+G CK    +  
Sbjct: 246 GNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERA 305

Query: 184 FRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           FRL   +++ S  +P+V+TY+ +I G CKE +L  AE+LL  M E+GL PN   +TTLID
Sbjct: 306 FRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLID 365

Query: 243 GHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNP 273
           GHC+ G  D A                             G +++A K++    + GL P
Sbjct: 366 GHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCP 425

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           DK+TYT+L+   CK+G +  ALD+  +M +     D   +T +I+ +C+  ++ +++++ 
Sbjct: 426 DKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLF 485

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            + L +GL P   TYT +I  +C+ G + +  ++ + M   G LP   TY AL++GLCK 
Sbjct: 486 DKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKE 545

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            +L+ A  L +TMLD  +VP D+T   L   +C+
Sbjct: 546 SRLEEARALFETMLDKHMVPCDVTCVTLAYEYCR 579



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 15/349 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+S       V++   C++G+ +D   +F    + G     V++   ++G CK   + + 
Sbjct: 211 GFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQA 270

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLID 242
           F +   M G G++P+VYT+++LI+GLCK    + A  L L  +      PN   +T +I 
Sbjct: 271 FHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIG 330

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+CK G+      +  A  ++  M   GL P+  TYT L+DG C+ G  + A ++  +M 
Sbjct: 331 GYCKEGK------LARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMK 384

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G   +   + A+I GFC+ GK+ +A ++LR     GL PD  TYTM+I   CK G   
Sbjct: 385 LEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHIT 444

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L  +M  +   P ++TY  ++   C+  Q++ +  L D  L +G+VP   TY  ++
Sbjct: 445 YALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMI 504

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS---KSSKYRQKR 464
            G+C+ G        F+++  + G + D   Y +L+S   K S+  + R
Sbjct: 505 AGYCRVGKSTSALKVFERM-VQHGCLPDPITYGALISGLCKESRLEEAR 552



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 172/374 (45%), Gaps = 38/374 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID + +          +L+++    Y P+V+ + V++   CKEGK+  A+M+     ++
Sbjct: 292 LIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQ 351

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++ TLI+GHC+  + D  F L + M+  G  P++YTY+A+I G CK+ ++  A
Sbjct: 352 GLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQA 411

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
             +L     +GL P+ V +T LI  HCK G I  A D+                      
Sbjct: 412 YKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAM 471

Query: 257 -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                  ++++++ D+  + GL P K TYT ++ G+C+ G   SAL + + M++ G   D
Sbjct: 472 YCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPD 531

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            + + ALISG C+  ++ EA  +   ML   + P D T   +   +C+   T      L 
Sbjct: 532 PITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLD 591

Query: 370 --EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             + R   H       +AL+  L     L  A++ L  +LD     D  TY   +   C 
Sbjct: 592 GLDKRQQAH-----AADALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINS-CY 645

Query: 428 HGNPEDFDKLQSEK 441
             N        SEK
Sbjct: 646 ESNRYALASEISEK 659


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 182/338 (53%), Gaps = 12/338 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D+G +PS+   N+++H LCK GK+  A   F+   +R +  +A +F+ LING  KA  + 
Sbjct: 183 DFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAV-RRSMPVSAATFSILINGLVKAGMMI 241

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   L      +G   D++TY+A++N L K  ++ +A  L+ ++   G TP    +  L+
Sbjct: 242 QAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALL 301

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G CK GR++ A D+   RKIVD    NG  PD +TYT L+DG  KE     A  + KEM
Sbjct: 302 NGLCKMGRLEEAIDL--LRKIVD----NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 355

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RG+ LD V +TALI G  + GK+ +A  + + M   G  PD  T + +ID   K G  
Sbjct: 356 ASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 415

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               R+ K M + G  P    Y+AL++GLCK  ++  A  +L  M      PD ITYNIL
Sbjct: 416 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNIL 475

Query: 422 LEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           ++G CK G+ E     FD++  E G   D   Y  L+S
Sbjct: 476 IDGLCKSGDVEAARAFFDEML-EAGCKPDVYTYNILIS 512



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 170/333 (51%), Gaps = 11/333 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ +++  +         E    G +  ++ +  +++ L K  KI++A  + ++    G
Sbjct: 230 LINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANG 289

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              T  ++N L+NG CK   L+E   L   +  +G  PDV TY++LI+GL KE R  +A 
Sbjct: 290 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 349

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  RGL  + V +T LI G  + G+I       +A  +   M ++G  PD +T +
Sbjct: 350 KLFKEMASRGLALDTVCYTALIRGLLQTGKI------PQASSVYKTMTSHGCVPDVVTLS 403

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++DG  K G + +A+ I K M  RG+  + V ++ALI G C+  K+  A  ML +M K 
Sbjct: 404 TMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 463

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              PD  TY ++ID  CK+GD +       EM   G  P V TYN L++GLCK G    A
Sbjct: 464 FCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAA 523

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             +LD M     V     Y+ L++G CK G  E
Sbjct: 524 CGVLDDMSSSRFV-----YSSLVDGLCKSGKLE 551



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 192/427 (44%), Gaps = 45/427 (10%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           + +H Y+ +V++L  +K   +A  L+  I +     + A+                  +A
Sbjct: 257 IDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATY-----------------NA 299

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFY 117
           L+     +G L++AI    LLRK    I   GC         LID + +          +
Sbjct: 300 LLNGLCKMGRLEEAID---LLRK----IVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 352

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+   G +     +  L+  L + GKI  A  V+      G     V+ +T+I+G  KA
Sbjct: 353 KEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 412

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +    R+   ME  G+ P+   YSALI+GLCK  ++D A  +L +M +   TP+ + +
Sbjct: 413 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 472

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             LIDG CK+G      D++ AR   DEM   G  PD  TY IL+ G CK G+ ++A  +
Sbjct: 473 NILIDGLCKSG------DVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGV 526

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +M           +++L+ G C+ GK+     +  EM + G+  +  T T +I   CK
Sbjct: 527 LDDMSS-----SRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVA-NSQTRTRLIFHLCK 580

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                    L   +R +G +P    YN++++ L K G++     +   M      PD +T
Sbjct: 581 ANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQEMTRWWK-PDRVT 638

Query: 418 YNILLEG 424
           YN LL G
Sbjct: 639 YNALLNG 645



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 14/218 (6%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P    +N+L+  LCK G ++ A+  FDE  + G      ++N LI+G CKA N D    
Sbjct: 466 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACG 525

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M  S      + YS+L++GLCK  +L+   +L HEM ER    N    T LI   C
Sbjct: 526 VLDDMSSSR-----FVYSSLVDGLCKSGKLEGGCMLFHEM-ERSGVANSQTRTRLIFHLC 579

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  R+D      EA  + + +   G+ P    Y  ++    K G +     + +EM  R 
Sbjct: 580 KANRVD------EAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEMT-RW 631

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            + D V + AL++G     ++  A     EM   G  P
Sbjct: 632 WKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVP 669



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 109/285 (38%), Gaps = 70/285 (24%)

Query: 34  VSKKG-MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           +SK G +G++  +F S +E RG     +V  AL+        +D A++    ++K +   
Sbjct: 409 LSKAGRIGAAVRIFKS-MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 467

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----------- 141
                  LID + ++        F+ E+L+ G  P VY +N+L+  LCK           
Sbjct: 468 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVL 527

Query: 142 -------------------EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
                               GK++   M+F E  + G+ A + +   LI   CKA  +DE
Sbjct: 528 DDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDE 586

Query: 183 GFRLKSVMEGSGM---------------------------------RPDVYTYSALINGL 209
              L + +   GM                                 +PD  TY+AL+NG+
Sbjct: 587 AVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTRWWKPDRVTYNALLNGM 646

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              NR+D A     EM  RG  P   I   L D   K    DM G
Sbjct: 647 IGANRMDRAHYYYLEMTGRGYVPPVSILHKLADDRLK----DMPG 687



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 5/152 (3%)

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL+  F R  +  EA  +L+  L    +PD  T+ ++I  +C   + +  F +++EM  D
Sbjct: 124 ALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEED 183

Query: 375 -GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---N 430
            G  P+++T+N +++GLCK G++  A    + +     V    T++IL+ G  K G    
Sbjct: 184 FGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPV-SAATFSILINGLVKAGMMIQ 242

Query: 431 PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
                +  +  G   D   YT++V+  +K ++
Sbjct: 243 AHSLAQETTTNGCTIDIHTYTAIVNWLAKNKK 274


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 137/522 (26%), Positives = 245/522 (46%), Gaps = 81/522 (15%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P ++  L     +   +   +  +  R L  L+++K    S + L A + +         
Sbjct: 36  PQYQKRLQKVQKLETLISRGRTITARRFLRSLLLTKTAFSSLSELHAHVSKP-------F 88

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
             D L+ +      LD+A   +  +RK  F    R    L+  ++ +     TL  + ++
Sbjct: 89  FSDNLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADV 148

Query: 121 LDY-----------------------------------GYSPSVYVFNVLMHKLCKEGKI 145
           +D                                    G  PSV+ +N+++  LCK  +I
Sbjct: 149 IDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRI 208

Query: 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
           KDA+ +FDE  +R +    V++NTLI+G+CK   ++E    K  M+   +  ++ TY++L
Sbjct: 209 KDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSL 268

Query: 206 INGLCKENRLDDAELLLHEMCERGLTP----------------------------NDVIF 237
           +NGLC   R+DDA  +L EM   G  P                            ++  +
Sbjct: 269 LNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTY 328

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             L++G C+ GRI+      +A +++ ++  NG+ P KI+Y IL++ +C+EGD++ A+  
Sbjct: 329 CILLNGLCRVGRIE------KAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILT 382

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            ++M +RG+E + + F  +IS FC  G+V  AE  +R M++ G+ P   TY  +I+ + +
Sbjct: 383 TEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQ 442

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G     F  L EM   G  P V +Y +L+N LCK  +L +A ++L  M+  GV P+   
Sbjct: 443 KGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEI 502

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           YN+L+E  C     +D    FD++  + G+ +    Y +L++
Sbjct: 503 YNMLIEASCSLSKLKDAFRFFDEM-IQSGIDATLVTYNTLIN 543



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 185/417 (44%), Gaps = 108/417 (25%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL----------------------- 160
           G  PSV+ +N+++  LCK  +IKDA+ +FDE  +R +                       
Sbjct: 187 GMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEA 246

Query: 161 ------------HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP----------- 197
                           V++N+L+NG C +  +D+   +   MEGSG  P           
Sbjct: 247 LGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDH 306

Query: 198 -----------------DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
                            D  TY  L+NGLC+  R++ AE +L ++ E G+TP+ + +  L
Sbjct: 307 SNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNIL 366

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ++ +C+ G      D+K+A    ++M   GL P++IT+  ++  FC+ G+++ A    + 
Sbjct: 367 VNAYCQEG------DVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRR 420

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN-- 358
           M+++G+      + +LI+G+ + G  V     L EM K G+KP+  +Y  +I+C CK+  
Sbjct: 421 MVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRK 480

Query: 359 ---------------------------------GDTKTGFRLLKEMRSDGHLPAVETYNA 385
                                               K  FR   EM   G    + TYN 
Sbjct: 481 LIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNT 540

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQ 438
           L+NGL ++G++K A  L   M   G  PD ITYN L+ G+ K  N +     +DK++
Sbjct: 541 LINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMK 597



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 168/337 (49%), Gaps = 40/337 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   FN ++ K C+ G++  A+       ++G+  T  ++N+LING+ +  +    
Sbjct: 390 GLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRC 449

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F     M+ +G++P+V +Y +LIN LCK+ +L DAE++L +M  RG++PN  I+  LI+ 
Sbjct: 450 FEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEA 509

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C   +      +K+A +  DEM  +G++   +TY  L++G  + G ++ A D+  +M  
Sbjct: 510 SCSLSK------LKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAG 563

Query: 304 RGIELDNVAFTALISGF----------------------------------CRGGKVVEA 329
           +G   D + + +LISG+                                  CR   VV  
Sbjct: 564 KGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTM 623

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           ++M +EML++ L PD   Y  +I  + ++G+      L ++M   G      TYN+L+  
Sbjct: 624 DKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILA 683

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             +  ++     L+D M   G+VP   TYNIL++G C
Sbjct: 684 YLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLC 720



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 159/324 (49%), Gaps = 10/324 (3%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++ LC+ G+I+ A+ V  +  + G+  + +S+N L+N +C+  ++ +       ME  
Sbjct: 330 ILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEER 389

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+ P+  T++ +I+  C+   +D AE  +  M E+G++P    + +LI+G+ + G     
Sbjct: 390 GLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHF--- 446

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
                  + +DEM   G+ P+ I+Y  L++  CK+  L  A  +  +MI RG+  +   +
Sbjct: 447 ---VRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIY 503

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI   C   K+ +A R   EM++ G+     TY  +I+   +NG  K    L  +M  
Sbjct: 504 NMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAG 563

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P V TYN+L++G  K    +    L D M  LG+ P   T++ L+   C+      
Sbjct: 564 KGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYA-CRKEGVVT 622

Query: 434 FDKLQSE---KGLVSDYACYTSLV 454
            DK+  E     LV D   Y  ++
Sbjct: 623 MDKMFQEMLQMDLVPDQFVYNEMI 646



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 141/284 (49%), Gaps = 7/284 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G SP+  ++N+L+   C   K+KDA   FDE  + G+ AT V++NTLING  +  
Sbjct: 490 DMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNG 549

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + +   L   M G G  PDV TY++LI+G  K         L  +M   G+ P    F 
Sbjct: 550 RVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFH 609

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI    K G + M        K+  EM    L PD+  Y  ++  + ++G++  A+ + 
Sbjct: 610 PLIYACRKEGVVTMD-------KMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLH 662

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+ +G++ D V + +LI  + R  +V E + ++ +M   GL P   TY ++I   C  
Sbjct: 663 QQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDL 722

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            D    +   +EM   G L  V     L++GL + G L+ A ++
Sbjct: 723 KDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIV 766



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+L     P  +V+N +++   ++G +  A  +  +   +G+    V++N+LI  + +
Sbjct: 627 FQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLR 686

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            + + E   L   M+  G+ P V TY+ LI GLC     + A     EM ERGL  N  +
Sbjct: 687 DRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSM 746

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
              LI G      +   G ++EA+ +  E+   GLN
Sbjct: 747 CYQLISG------LREEGMLREAQIVSSELSIGGLN 776



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 56/119 (47%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  + +++D G       +N L+    ++ ++ + + + D+   +GL     ++N LI 
Sbjct: 658 AMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIK 717

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           G C  K+ +  +     M   G+  +V     LI+GL +E  L +A+++  E+   GL 
Sbjct: 718 GLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIVSSELSIGGLN 776


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 225/450 (50%), Gaps = 35/450 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG--MGSSASLFASILETRG------ 54
           F+  +  Y+ ++  L   ++  + + LL  IV  K   +G   +    +L   G      
Sbjct: 92  FQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGE 151

Query: 55  -THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
            + +  LVLD L+  YV +G  D+AI      ++  F      C  L++R++      + 
Sbjct: 152 HSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMA 211

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +  Y  +   G +P+ Y + + +  LC++G  ++A  VF E  + G++  AV+ +T I G
Sbjct: 212 VAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEG 271

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C  K  D G+     +  +    D + Y+A+I G C E +L +AE +  +M   G+ P+
Sbjct: 272 LCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPD 331

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP----------------DKIT 277
             I+  LI  +CK      AG++ +A  + ++M +NG+                  D++ 
Sbjct: 332 GYIYGALIHAYCK------AGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVL 385

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y I++D  CK G +E A+++  EM  R + LD V +T LI+G+C  GK+V+A+ M  EM 
Sbjct: 386 YNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMK 445

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G++PD  TY +++  F +NG  K    LL  + + G  P   T+N ++ GLC  G++K
Sbjct: 446 ERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVK 505

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            A   L+T+ D  +      Y+ +++G+CK
Sbjct: 506 EAEAFLNTLEDKCLE----NYSAMVDGYCK 531



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 180/365 (49%), Gaps = 37/365 (10%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-----QMV-----------FDEFGKRGL 160
           ++++++ G +P  Y++  L+H  CK G +  A      MV           F EF   G+
Sbjct: 320 FIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGI 379

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
               V +N +++  CK   ++E   L + M+G  M  DV  Y+ LI G C + +L DA+ 
Sbjct: 380 FLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKN 439

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           +  EM ERG+ P+ V +  L+ G  +NG        KEA +++D + T GL P+  T+  
Sbjct: 440 MFEEMKERGIEPDIVTYNILVGGFSRNGL------KKEALELLDCIGTQGLKPNSATHNR 493

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           +++G C  G ++ A      +  + +E     ++A++ G+C+     +A  +   + K G
Sbjct: 494 IIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCKANFTRKAYELFSRLSKQG 549

Query: 341 L--------KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           +        +P+   Y  +I  FC++GD K    +   +   G  P V TY  ++NG C+
Sbjct: 550 ILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCR 609

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
              L+ A  + + M + G+ PD ITY ++L+GH K  N +D   L  E   +GL  D   
Sbjct: 610 VNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVT 669

Query: 450 YTSLV 454
           YT+L+
Sbjct: 670 YTALL 674



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 131/262 (50%), Gaps = 18/262 (6%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+ + G  P +  +N+L+    + G  K+A  + D  G +GL   + + N +I G C 
Sbjct: 441 FEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCM 500

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL------ 230
           A  + E     + +E   +      YSA+++G CK N    A  L   + ++G+      
Sbjct: 501 AGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCKANFTRKAYELFSRLSKQGILRMLAL 556

Query: 231 --TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
              PN +++  LI   C++G      DMK A+ + D +   G+ PD ITYT++++G+C+ 
Sbjct: 557 DVEPNQIMYGKLIGAFCRDG------DMKRAQLVFDMLVERGITPDVITYTMMINGYCRV 610

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             L  A DI  +M +RGI+ D + +T ++ G  +   + +A  +  EM+  GL+PD  TY
Sbjct: 611 NCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTY 670

Query: 349 TMVIDCFCKNGDTKTGFRLLKE 370
           T ++   C  G      + L+E
Sbjct: 671 TALLPGKCNFGSRHFDNQWLEE 692



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 112/267 (41%), Gaps = 32/267 (11%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC--ERGLTPNDV------------ 235
           ++ SG + +V TY+ALI  LC+       + LL E+   +  +   D+            
Sbjct: 87  LKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGG 146

Query: 236 ------------IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
                       +   L+  + + G  D A D     K        G  P  ++   L++
Sbjct: 147 EVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTK------RRGFVPHIMSCNFLMN 200

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
              + G ++ A+ I + + + G+  ++  +   I   CR G   EA  + REM + G+ P
Sbjct: 201 RLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNP 260

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +  T +  I+  C +  +  G+  L+ +R+         Y A++ G C   +LK A  + 
Sbjct: 261 NAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVF 320

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGN 430
             M++ G+ PD   Y  L+  +CK GN
Sbjct: 321 IDMVNEGIAPDGYIYGALIHAYCKAGN 347



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           M++  + + G        L + +  G +P + + N LMN L +HG++  A  +   +  L
Sbjct: 162 MLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRL 221

Query: 410 GVVPDDITYNILLEGHCKHGNPED 433
           G+ P+D TY I ++  C+ GN E+
Sbjct: 222 GLNPNDYTYGIFIKALCRKGNFEE 245


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 169/323 (52%), Gaps = 17/323 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+   SP+V  +N L++   KEGK  +A  ++DE   RG+    +++N++I+G CK  
Sbjct: 313 EMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD    +  +M   G  PDV+T++ LI+G C   R+DD   LLHEM  RGL  N V + 
Sbjct: 373 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 432

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C      + GD+  A  +  +M ++G+ PD +T   LLDG C  G L+ AL++ 
Sbjct: 433 TLIHGFC------LVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486

Query: 299 KEMIK-----------RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           K M K            G+E D + +  LI G    GK +EAE +  EM   G+ PD  T
Sbjct: 487 KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y+ +ID  CK        ++   M S    P V T+N L+NG CK G++ +   L   M 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606

Query: 408 DLGVVPDDITYNILLEGHCKHGN 430
             G+V D I Y  L+ G  K GN
Sbjct: 607 RRGIVADAIIYITLIYGFRKVGN 629



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 39/484 (8%)

Query: 4   RLTLH----AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH--- 56
           +L LH     ++T++H L      S+A DL H I     +  +  +     E R      
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVA 203

Query: 57  -LPGLVLDALMIVYVDLG-FLD------DAIQCFRLLRK----HYFRIPARGCRCLIDRM 104
            L  +V + L    +  G F+D      D +    LLRK     + +        +ID +
Sbjct: 204 LLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL 263

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            +    + +   ++E+ D G  P++  +N ++   C  G+   AQ +  E  +R +    
Sbjct: 264 CKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNV 323

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           V++N LIN   K     E   L   M   G+ P+  TY+++I+G CK++RLD AE + + 
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  +G +P+   FTTLIDG+C   RID      +  +++ EM   GL  + +TY  L+ G
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRID------DGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV----- 339
           FC  GDL +ALD+ ++MI  G+  D V    L+ G C  GK+ +A  M + M K      
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 497

Query: 340 ------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
                 G++PD  TY ++I      G       L +EM   G +P   TY+++++GLCK 
Sbjct: 498 ASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
            +L  A  +  +M      P+ +T+N L+ G+CK G  +D  +L  E   +G+V+D   Y
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617

Query: 451 TSLV 454
            +L+
Sbjct: 618 ITLI 621



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 183/358 (51%), Gaps = 12/358 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  ++R   P + +  Y ++        +Y F +L+   C   K+  A   F +  K G
Sbjct: 87  LMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLG 146

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           LH   V+F TL++G C    + E   L   +     RPDV T++ L+NGLC+E R+ +A 
Sbjct: 147 LHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAV 202

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  M E GL P+ + + T +DG CK G  D    +   RK+ +    + + P+ + Y+
Sbjct: 203 ALLDRMVENGLQPDQITYGTFVDGMCKMG--DTVSALNLLRKMEE---ISHIKPNVVIYS 257

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++DG CK+G    + ++  EM  +GI  + V +  +I GFC  G+   A+R+L+EML+ 
Sbjct: 258 AIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER 317

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + P+  TY  +I+ F K G       L  EM   G +P   TYN++++G CK  +L  A
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             +   M   G  PD  T+  L++G+C     +D  +L  E   +GLV++   Y +L+
Sbjct: 378 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 29/339 (8%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           ++DA  +F +  +     + + FN L+    + +  D    L   ME   +R D+Y+++ 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------- 253
           LI   C  ++L  A     ++ + GL P+ V FTTL+ G C + R+  A           
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 254 --------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                         G + EA  ++D M  NGL PD+ITY   +DG CK GD  SAL++ +
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241

Query: 300 EMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +M +   I+ + V ++A+I G C+ G+  ++  +  EM   G+ P+  TY  +I  FC +
Sbjct: 242 KMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCIS 301

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      RLL+EM      P V TYNAL+N   K G+   A  L D ML  G++P+ ITY
Sbjct: 302 GRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY 361

Query: 419 NILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
           N +++G CK       ED   L + KG   D   +T+L+
Sbjct: 362 NSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 100/178 (56%), Gaps = 6/178 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N+L+  L  EGK  +A+ +++E   RG+    ++++++I+G CK   LDE 
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   M      P+V T++ LING CK  R+DD   L  EM  RG+  + +I+ TLI G
Sbjct: 564 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
             K G I+ A D      I  EM ++G+ PD IT   +L GF  + +LE A+ + +++
Sbjct: 624 FRKVGNINGALD------IFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 188/348 (54%), Gaps = 9/348 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ L    ++L  GY P       L++  C+  ++ DA  + D+  + G     V++N +
Sbjct: 137 SLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAI 196

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+  CK K +++ F     +E  G+RP+V TY+AL+NGLC  +R  DA  LL +M ++ +
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
           TPN + ++ L+D   KNG++       EA+++ +EM    ++PD +TY+ L++G C    
Sbjct: 257 TPNVITYSALLDAFVKNGKV------LEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A  +   M+ +G   D V++  LI+GFC+  +V +  ++ REM + GL  +  TY  
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I  F + GD         +M   G  P + TYN L+ GLC +G+L+ A ++ + M    
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +  D +TY  ++ G CK G  E+   L    S KGL  D   YT+++S
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 175/330 (53%), Gaps = 6/330 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L++   R N  +  +    ++++ GY P +  +N ++  LCK  ++ DA   F E  ++G
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++  L+NG C +    +  RL S M    + P+V TYSAL++   K  ++ +A+
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM    + P+ V +++LI+G C + RID      EA ++ D M + G   D ++Y 
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRID------EANQMFDLMVSKGCLADVVSYN 334

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++GFCK   +E  + + +EM +RG+  + V +  LI GF + G V +A+    +M   
Sbjct: 335 TLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF 394

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ PD  TY +++   C NG+ +    + ++M+       + TY  ++ G+CK G+++ A
Sbjct: 395 GISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEA 454

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             L  ++   G+ PD +TY  ++ G C  G
Sbjct: 455 WSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 181/348 (52%), Gaps = 13/348 (3%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++LG  +E+L  G    +Y FN++++  C   ++  A  +  +  K G     V+  +L
Sbjct: 104 VISLGKKMEVL--GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSL 161

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +NG C+   + +   L   M   G +PD+  Y+A+I+ LCK  R++DA     E+  +G+
Sbjct: 162 VNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI 221

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            PN V +T L++G C + R        +A +++ +M    + P+ ITY+ LLD F K G 
Sbjct: 222 RPNVVTYTALVNGLCNSSR------WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A ++ +EM++  I+ D V +++LI+G C   ++ EA +M   M+  G   D  +Y  
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ FCK    + G +L +EM   G +    TYN L+ G  + G +  A      M   G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395

Query: 411 VVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           + PD  TYNILL G C +G  E     F+ +Q ++ +  D   YT+++
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQ-KREMDLDIVTYTTVI 442



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 170/317 (53%), Gaps = 9/317 (2%)

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           ++ K+ DA  +F +  K     + V FN L++   K K  D    L   ME  G+R D+Y
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           T++ +IN  C   ++  A  +L +M + G  P+ V   +L++G C+  R+       +A 
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS------DAV 175

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            +VD+M   G  PD + Y  ++D  CK   +  A D  KE+ ++GI  + V +TAL++G 
Sbjct: 176 SLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 235

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C   +  +A R+L +M+K  + P+  TY+ ++D F KNG       L +EM      P +
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL--- 437
            TY++L+NGLC H ++  AN + D M+  G + D ++YN L+ G CK    ED  KL   
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFRE 355

Query: 438 QSEKGLVSDYACYTSLV 454
            S++GLVS+   Y +L+
Sbjct: 356 MSQRGLVSNTVTYNTLI 372



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 173/347 (49%), Gaps = 35/347 (10%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           ++DA   F+ + +   R        L++ +  ++  +       +++    +P+V  ++ 
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 265

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+    K GK+ +A+ +F+E  +  +    V++++LING C    +DE  ++  +M   G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              DV +Y+ LING CK  R++D   L  EM +RGL  N V + TLI G  +      AG
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ------AG 379

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+ +A++   +M   G++PD  TY ILL G C  G+LE AL I ++M KR ++LD V +T
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 439

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI---------------------- 352
            +I G C+ GKV EA  +   +   GLKPD  TYT ++                      
Sbjct: 440 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499

Query: 353 -----DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
                DC   +GD      L+K+M S G+ P++     + +G+CK  
Sbjct: 500 GLMKNDCTLSDGDITLSAELIKKMLSCGYAPSL--LKDIKSGVCKKA 544


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 188/348 (54%), Gaps = 9/348 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ L    ++L  GY P       L++  C+  ++ DA  + D+  + G     V++N +
Sbjct: 137 SLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAI 196

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+  CK K +++ F     +E  G+RP+V TY+AL+NGLC  +R  DA  LL +M ++ +
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
           TPN + ++ L+D   KNG++       EA+++ +EM    ++PD +TY+ L++G C    
Sbjct: 257 TPNVITYSALLDAFVKNGKV------LEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDR 310

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A  +   M+ +G   D V++  LI+GFC+  +V +  ++ REM + GL  +  TY  
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I  F + GD         +M   G  P + TYN L+ GLC +G+L+ A ++ + M    
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +  D +TY  ++ G CK G  E+   L    S KGL  D   YT+++S
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 175/330 (53%), Gaps = 6/330 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L++   R N  +  +    ++++ GY P +  +N ++  LCK  ++ DA   F E  ++G
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++  L+NG C +    +  RL S M    + P+V TYSAL++   K  ++ +A+
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM    + P+ V +++L++G C + RID      EA ++ D M + G   D ++Y 
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRID------EANQMFDLMVSKGCLADVVSYN 334

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++GFCK   +E  + + +EM +RG+  + V +  LI GF + G V +A+    +M   
Sbjct: 335 TLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF 394

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ PD  TY +++   C NG+ +    + ++M+       + TY  ++ G+CK G+++ A
Sbjct: 395 GISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEA 454

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             L  ++   G+ PD +TY  ++ G C  G
Sbjct: 455 WSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 181/348 (52%), Gaps = 13/348 (3%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++LG  +E+L  G    +Y FN++++  C   ++  A  +  +  K G     V+  +L
Sbjct: 104 VISLGKKMEVL--GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSL 161

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +NG C+   + +   L   M   G +PD+  Y+A+I+ LCK  R++DA     E+  +G+
Sbjct: 162 VNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI 221

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            PN V +T L++G C + R        +A +++ +M    + P+ ITY+ LLD F K G 
Sbjct: 222 RPNVVTYTALVNGLCNSSR------WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A ++ +EM++  I+ D V +++L++G C   ++ EA +M   M+  G   D  +Y  
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ FCK    + G +L +EM   G +    TYN L+ G  + G +  A      M   G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395

Query: 411 VVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           + PD  TYNILL G C +G  E     F+ +Q ++ +  D   YT+++
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQ-KREMDLDIVTYTTVI 442



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 170/317 (53%), Gaps = 9/317 (2%)

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           ++ K+ DA  +F +  K     + V FN L++   K K  D    L   ME  G+R D+Y
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           T++ +IN  C   ++  A  +L +M + G  P+ V   +L++G C+  R+       +A 
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS------DAV 175

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            +VD+M   G  PD + Y  ++D  CK   +  A D  KE+ ++GI  + V +TAL++G 
Sbjct: 176 SLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 235

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C   +  +A R+L +M+K  + P+  TY+ ++D F KNG       L +EM      P +
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL--- 437
            TY++L+NGLC H ++  AN + D M+  G + D ++YN L+ G CK    ED  KL   
Sbjct: 296 VTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFRE 355

Query: 438 QSEKGLVSDYACYTSLV 454
            S++GLVS+   Y +L+
Sbjct: 356 MSQRGLVSNTVTYNTLI 372



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 173/347 (49%), Gaps = 35/347 (10%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           ++DA   F+ + +   R        L++ +  ++  +       +++    +P+V  ++ 
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 265

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+    K GK+ +A+ +F+E  +  +    V++++L+NG C    +DE  ++  +M   G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKG 325

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              DV +Y+ LING CK  R++D   L  EM +RGL  N V + TLI G  +      AG
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ------AG 379

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+ +A++   +M   G++PD  TY ILL G C  G+LE AL I ++M KR ++LD V +T
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 439

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI---------------------- 352
            +I G C+ GKV EA  +   +   GLKPD  TYT ++                      
Sbjct: 440 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499

Query: 353 -----DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
                DC   +GD      L+K+M S G+ P++     + +G+CK  
Sbjct: 500 GLMKNDCTLSDGDITLSAELIKKMLSCGYAPSL--LKDIKSGVCKKA 544


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 198/389 (50%), Gaps = 9/389 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D+A++ F  + +       R    +I  + +    T  L  + E+ +    P+V+ + V
Sbjct: 290 VDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTV 349

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+  LC++    DA+ + +   ++GL  + V++N LI+G+CK         + S+ME + 
Sbjct: 350 LICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNN 409

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             P+  TY+ LI G C+   +  A  LLH+M ER L PN V +  LI G CK G      
Sbjct: 410 CSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEG------ 463

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+  A K++  M  +GL PD+ TY++ +D  CK G +E A  + + + ++GI+ + V ++
Sbjct: 464 DLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYS 523

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI G+C+ GKV +   +L +ML  G  P+  TY  +ID +CK  + K    L+  M   
Sbjct: 524 TLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKR 583

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              PA +TY  L++ L K  +   A+ + D ML  G  PD   Y   +  +C HG  +D 
Sbjct: 584 DIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDA 643

Query: 435 DKL---QSEKGLVSDYACYTSLVSKSSKY 460
           + L    + KG++ D   YT  +    ++
Sbjct: 644 EVLICKMNAKGIMPDTMLYTLFIDAYGRF 672



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 181/353 (51%), Gaps = 14/353 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+  G S   + +  L+   C+   +  A  +F     +G     VS+  LI+G C+A+
Sbjct: 229 KIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEAR 288

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  +L S M      P V TY+ +I  LC+  R  +A  +  EM E+   PN   +T
Sbjct: 289 RVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYT 348

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   C++   D      +A+KI++ M   GL P  +TY  L+DG+CK+G   SAL+I 
Sbjct: 349 VLICSLCEDSNFD------DAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEIL 402

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M       +   +  LI GFCRG  + +A  +L +ML+  L+P+  TY ++I   CK 
Sbjct: 403 SLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKE 462

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD  + ++LL  M   G +P   TY+  ++ LCK G ++ A  L +++ + G+  +++ Y
Sbjct: 463 GDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIY 522

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS---KSSKYRQKR 464
           + L++G+CK G   D     DK+ S  G V +   Y SL+    K   +++ R
Sbjct: 523 STLIDGYCKVGKVSDGRFLLDKMLS-AGCVPNSITYNSLIDGYCKEKNFKEAR 574



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 201/464 (43%), Gaps = 55/464 (11%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARD---LLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
            +H   +++H ++  K+         L+H    +  +GS+  L + + E+      GLV 
Sbjct: 429 NIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNES------GLVP 482

Query: 63  DALMI-VYVDL----GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           D     V++D     G +++A   F  L++   +        LID   +     V+ G +
Sbjct: 483 DEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVG--KVSDGRF 540

Query: 118 L--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           L  ++L  G  P+   +N L+   CKE   K+A+++ D   KR +   A ++  LI+   
Sbjct: 541 LLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLL 600

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K    D+   +   M  +G  PDV+ Y+A I+  C   RL DAE+L+ +M  +G+ P+ +
Sbjct: 601 KDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTM 660

Query: 236 IFTTLIDGHCKNGRIDMA-GDMKEARKIVDEMCTNGLNPDKITYTILLDGF--------- 285
           ++T  ID + + G ID A G +K   ++       G  P   TY+ L+            
Sbjct: 661 LYTLFIDAYGRFGSIDGAFGILKRMHEV-------GCEPSYYTYSCLIKHLSNAKPKEVS 713

Query: 286 --------------------CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
                                +  D E  LD+  +M + G   +   +   I+G C+ G 
Sbjct: 714 SSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGC 773

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           +  A R+   M + G  P++  Y  ++ C C+ G      R L  M  + HLP +++   
Sbjct: 774 LEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKL 833

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           L+ GL   G  + A  +  + L      D++ + +L++G  K G
Sbjct: 834 LLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKG 877



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ L+  L +   +D+ + +  EM +  +TPN     T+++G+CK       G++ EA  
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCK------LGNVVEAEL 225

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            V ++   GL+ D  TYT L+ G+C+  ++++A  I   M  +G   + V++T LI GFC
Sbjct: 226 YVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFC 285

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
              +V EA ++  +M +    P   TYT++I   C+ G       + KEM      P V 
Sbjct: 286 EARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVH 345

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           TY  L+  LC+     +A  +L+ ML+ G++P  +TYN L++G+CK G
Sbjct: 346 TYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKG 393



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 3/202 (1%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           + E + +  EM  + + P+  T   +++G+CK G++  A     ++++ G+ LD   +T+
Sbjct: 185 IDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTS 244

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI G+CR   V  A  +   M   G   ++ +YT +I  FC+        +L  +M  D 
Sbjct: 245 LILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDN 304

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             P V TY  ++  LC+ G+   A  +   M +    P+  TY +L+   C+  N +D  
Sbjct: 305 CWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAK 364

Query: 436 KLQS---EKGLVSDYACYTSLV 454
           K+ +   EKGL+     Y +L+
Sbjct: 365 KILNGMLEKGLIPSVVTYNALI 386



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 129/322 (40%), Gaps = 39/322 (12%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID +++ +        + ++L  G  P V+++   +H  C  G++KDA+++  +   +G
Sbjct: 595 LIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKG 654

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN------ 213
           +    + +   I+ + +  ++D  F +   M   G  P  YTYS LI  L          
Sbjct: 655 IMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSS 714

Query: 214 --------------------RLDDAEL---LLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
                               R  D E    L  +M E G  PN   +   I G CK G +
Sbjct: 715 SSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCL 774

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG--IEL 308
           ++A       ++ D M   G +P++  Y  LL   C+ G    A+     MI+      L
Sbjct: 775 EVA------HRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHL 828

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D+     L+ G    G   +A+R+    L+     D+  + ++ID   K G +     L 
Sbjct: 829 DSCKL--LLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLF 886

Query: 369 KEMRSDGHLPAVETYNALMNGL 390
             M + G     +TY+ L+ G 
Sbjct: 887 GIMETQGCQIHPKTYSMLIEGF 908


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 169/323 (52%), Gaps = 17/323 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+   SP+V  +N L++   KEGK  +A  ++DE   RG+    +++N++I+G CK  
Sbjct: 313 EMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD    +  +M   G  PDV+T++ LI+G C   R+DD   LLHEM  RGL  N V + 
Sbjct: 373 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 432

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C      + GD+  A  +  +M ++G+ PD +T   LLDG C  G L+ AL++ 
Sbjct: 433 TLIHGFC------LVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486

Query: 299 KEMIK-----------RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           K M K            G+E D + +  LI G    GK +EAE +  EM   G+ PD  T
Sbjct: 487 KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y+ +ID  CK        ++   M S    P V T+N L+NG CK G++ +   L   M 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606

Query: 408 DLGVVPDDITYNILLEGHCKHGN 430
             G+V D I Y  L+ G  K GN
Sbjct: 607 RRGIVADAIIYITLIYGFRKVGN 629



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 39/484 (8%)

Query: 4   RLTLH----AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH--- 56
           +L LH     ++T++H L      S+A DL H I     +  +  +     E R      
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVA 203

Query: 57  -LPGLVLDALMIVYVDLG-FLD------DAIQCFRLLRK----HYFRIPARGCRCLIDRM 104
            L  +V + L    +  G F+D      D +    LLRK     + +        +ID +
Sbjct: 204 LLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL 263

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            +    + +   ++E+ D G  P++  +N ++   C  G+   AQ +  E  +R +    
Sbjct: 264 CKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNV 323

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           V++N LIN   K     E   L   M   G+ P+  TY+++I+G CK++RLD AE + + 
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  +G +P+   FTTLIDG+C   RID      +  +++ EM   GL  + +TY  L+ G
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRID------DGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV----- 339
           FC  GDL +ALD+ ++MI  G+  D V    L+ G C  GK+ +A  M + M K      
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 497

Query: 340 ------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
                 G++PD  TY ++I      G       L +EM   G +P   TY+++++GLCK 
Sbjct: 498 ASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
            +L  A  +  +M      P+ +T+N L+ G+CK G  +D  +L  E   +G+V+D   Y
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617

Query: 451 TSLV 454
            +L+
Sbjct: 618 ITLI 621



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 183/358 (51%), Gaps = 12/358 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  ++R   P + +  Y ++        +Y F +L+   C   K+  A   F +  K G
Sbjct: 87  LMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLG 146

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           LH   V+F TL++G C    + E   L   +     RPDV T++ L+NGLC+E R+ +A 
Sbjct: 147 LHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAV 202

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  M E GL P+ + + T +DG CK G  D    +   RK+ +    + + P+ + Y+
Sbjct: 203 ALLDRMVENGLQPDQITYGTFVDGMCKMG--DTVSALNLLRKMEE---ISHIKPNVVIYS 257

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++DG CK+G    + ++  EM  +GI  + V +  +I GFC  G+   A+R+L+EML+ 
Sbjct: 258 AIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER 317

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + P+  TY  +I+ F K G       L  EM   G +P   TYN++++G CK  +L  A
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             +   M   G  PD  T+  L++G+C     +D  +L  E   +GLV++   Y +L+
Sbjct: 378 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 29/339 (8%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           ++DA  +F +  +     + + FN L+    + +  D    L   ME   +R D+Y+++ 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------- 253
           LI   C  ++L  A     ++ + GL P+ V FTTL+ G C + R+  A           
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 254 --------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                         G + EA  ++D M  NGL PD+ITY   +DG CK GD  SAL++ +
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241

Query: 300 EMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +M +   I+ + V ++A+I G C+ G+  ++  +  EM   G+ P+  TY  +I  FC +
Sbjct: 242 KMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCIS 301

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      RLL+EM      P V TYNAL+N   K G+   A  L D ML  G++P+ ITY
Sbjct: 302 GRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY 361

Query: 419 NILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
           N +++G CK       ED   L + KG   D   +T+L+
Sbjct: 362 NSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 53/303 (17%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           FYL +   G SP V+ F  L+   C   +I D   +  E  +RGL A  V++NTLI+G C
Sbjct: 381 FYL-MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFC 439

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA----------------- 218
              +L+    L   M  SG+ PD+ T + L++GLC   +L DA                 
Sbjct: 440 LVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 499

Query: 219 -----------------------------ELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
                                        E L  EM  RG+ P+ + ++++IDG CK  R
Sbjct: 500 HPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 559

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D      EA ++   M +   +P+ +T+  L++G+CK G ++  L++  EM +RGI  D
Sbjct: 560 LD------EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 613

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            + +  LI GF + G +  A  + +EM+  G+ PD  T   ++  F    + +    +L+
Sbjct: 614 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 673

Query: 370 EMR 372
           +++
Sbjct: 674 DLQ 676



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 17/235 (7%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-----------RGLHATAVSF 167
           +++  G  P +   N L+  LC  GK+KDA  +F    K            G+    +++
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           N LI G        E   L   M   G+ PD  TYS++I+GLCK++RLD+A  +   M  
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           +  +PN V F TLI+G+CK GR+D      +  ++  EM   G+  D I Y  L+ GF K
Sbjct: 573 KSFSPNVVTFNTLINGYCKAGRVD------DGLELFCEMGRRGIVADAIIYITLIYGFRK 626

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G++  ALDI +EMI  G+  D +    +++GF    ++  A  ML ++ +  L+
Sbjct: 627 VGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQLE 681


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 142/460 (30%), Positives = 215/460 (46%), Gaps = 38/460 (8%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV- 61
           F  T+  +ST++H L      S+A DL H +     +  +  +     E R      L+ 
Sbjct: 144 FHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLD 203

Query: 62  ------LDALMIVY---VD-LGFLDDAIQCFRLLRK---------HYFRIPARGCRCLID 102
                 L    I Y   VD +  + D +    LLRK         +    P     C+I+
Sbjct: 204 RMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMIN 263

Query: 103 RMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
               +   +       E+L+    SP V  +N L++   KEGK  +A+ ++DE   RG+ 
Sbjct: 264 GFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII 323

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            + ++++++I+G CK   LD    +  +M   G  PD+ T++ LI G C+  R+DD   L
Sbjct: 324 PSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKL 383

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           LHEM E GL  N + +TTLI G C+       GD+  A+ ++ EM ++G+ P+ +T   L
Sbjct: 384 LHEMTEAGLVANTITYTTLIHGFCQ------VGDLNAAQDLLQEMVSSGVCPNVVTCNTL 437

Query: 282 LDGFCKEGDLESALDIRKEMIK-----------RGIELDNVAFTALISGFCRGGKVVEAE 330
           LDG C  G L+ AL++ K M K            G+E D   +  LISG    GK +EAE
Sbjct: 438 LDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 497

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  EM   G+ PD  TY  VI   CK        ++   M S    P V T+  L+NG 
Sbjct: 498 ELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 557

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           CK G++ +   L   M   G+V + ITY  L+ G  K GN
Sbjct: 558 CKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGN 597



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 229/473 (48%), Gaps = 65/473 (13%)

Query: 37  KGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KG+  +  LF  ++ +R   LP ++    LM V V +G LD  I   R +     R+P  
Sbjct: 57  KGLEDAIDLFGDMVRSR--PLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMR--RVPCN 112

Query: 96  G--------CRCLIDRM---MRTNLPTVTLGFYLEILDYGY------------------- 125
                    C C   ++   + T      LGF+  ++ +                     
Sbjct: 113 AYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFH 172

Query: 126 ---SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
               P+V  F  LM+ LC+EG++ +A  + D   + GL    +++ T+++G CK  +   
Sbjct: 173 QMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVS 232

Query: 183 GFRL-KSVMEGSGMRPDVYTY-----SALINGLCKENRLDDAELLLHEMCERG-LTPNDV 235
              L + + E S ++P+V  +     + +ING C   R  +A+ LL EM ER  ++P+ V
Sbjct: 233 ALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVV 292

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  LI+   K G+        EA ++ DEM   G+ P  ITY+ ++DGFCK+  L++A 
Sbjct: 293 TYNALINAFVKEGKF------FEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAE 346

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   M  +G   D + F  LI+G+CR  +V +  ++L EM + GL  +  TYT +I  F
Sbjct: 347 HMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF 406

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM----LDL-- 409
           C+ GD      LL+EM S G  P V T N L++GLC +G+LK+A  +   M    +D+  
Sbjct: 407 CQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 466

Query: 410 -----GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
                GV PD  TYNIL+ G    G   + ++L  E   +G+V D   Y S++
Sbjct: 467 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVI 519



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 41/341 (12%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+L  G  PS   ++ ++   CK+ ++  A+ +F     +G     ++FNTLI G+C
Sbjct: 313 LYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYC 372

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +AK +D+G +L   M  +G+  +  TY+ LI+G C+   L+ A+ LL EM   G+ PN V
Sbjct: 373 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVV 432

Query: 236 IFTTLIDGHCKNGRIDMA----------------------------------------GD 255
              TL+DG C NG++  A                                        G 
Sbjct: 433 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGK 492

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
             EA ++ +EM   G+ PD ITY  ++ G CK+  L+ A  +   M  +    + V FT 
Sbjct: 493 FLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 552

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI+G+C+ G+V +   +  EM + G+  +  TY  +I  F K G+      + +EM + G
Sbjct: 553 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASG 612

Query: 376 HLPAVETYNALMNGLCKHGQLKNA-NMLLDTMLDLGVVPDD 415
             P   T   ++ GL    +LK A  ML D  + +G   +D
Sbjct: 613 VYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSVGYQLED 653



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 20/295 (6%)

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L +G  + K L++   L   M  S   P V  +  L+  + +  RLD    L  +M  R 
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           +  N   FT L+   C   ++        A     ++   G +P  +T++ LL G C E 
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPF------ALSTFGKITKLGFHPTVVTFSTLLHGLCVED 162

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +  ALD+  +M K  +    V FT L++G CR G+VVEA  +L  ML+ GL+P+  TY 
Sbjct: 163 RISEALDLFHQMCKPNV----VTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYG 218

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHL-PAV-----ETYNALMNGLCKHGQLKNANMLL 403
            ++D  CK GDT +   LL++M    H+ P V     E    ++NG C  G+   A  LL
Sbjct: 219 TIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLL 278

Query: 404 DTMLDL-GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             ML+   + PD +TYN L+    K G   + ++L  E   +G++     Y+S++
Sbjct: 279 QEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMI 333


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 184/336 (54%), Gaps = 14/336 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+  ++N  +H LCK GK+ +A  V             V+FNTLI G CKA  LDE 
Sbjct: 49  GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   ME SG   ++ TY+ LINGL    R  +A L++  M     TP+   +  +I G
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHG 165

Query: 244 HCKNGRIDMA-GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
            CK+G ID A G ++E ++        G +PD  TY+IL++G CK  +L  A ++ +EMI
Sbjct: 166 FCKSGEIDRAYGFLEEMKQ------RAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 303 -KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            ++      VAF  L+ G+C+   +  A  +L  ML+ G  PD  TY+ +ID  C+ GD 
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
             GF LL++M S G  P V TY  L+ GLCK G++  A  L+  ML+ G  P+ +TY+++
Sbjct: 280 DKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLV 339

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            +G CK    +  + L +   +KG V+D   + +L+
Sbjct: 340 FDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 162/303 (53%), Gaps = 11/303 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P V  FN L+  LCK G++ +AQ V DE  + G  A  V++NTLING   A    
Sbjct: 82  DGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSG 141

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTL 240
           E      VM+G    PD  TY+A+I+G CK   +D A   L EM +R G +P+   ++ L
Sbjct: 142 EAVL---VMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSIL 198

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           I+G CK      + ++++A +++ EM          + +  L+DG+CK  DL+ A ++  
Sbjct: 199 INGLCK------SSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLS 252

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M++ G   D V ++ +I G CR G V +   +L +M+  G KPD  TYT+++   CK G
Sbjct: 253 SMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAG 312

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                 RL+K M  DG  P   TY+ + +GLCK  +L  AN LL ++ D G V D + + 
Sbjct: 313 KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFE 372

Query: 420 ILL 422
            LL
Sbjct: 373 TLL 375



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEAERM 332
           D  TY +L+   C  G+L++A+D+ +EM ++ G+      +   +   C+ GKV EA  +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           ++ M     KPD  T+  +I   CK G      ++L EM   G    + TYN L+NGL  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYA 448
            G+   A +++  M      PD  TYN ++ G CK G  +      ++++   G   D  
Sbjct: 137 AGRSGEAVLVMQGMT---TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 449 CYTSLVS---KSSKYRQ 462
            Y+ L++   KSS  R+
Sbjct: 194 TYSILINGLCKSSNLRK 210



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 65/122 (53%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L++G +P V  ++ ++  LC+ G +     + ++   RG     V++  L+ G CKA  
Sbjct: 254 MLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGK 313

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E  RL   M   G  P+  TYS + +GLCK ++LD A  LL  + ++G   + V F T
Sbjct: 314 MVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFET 373

Query: 240 LI 241
           L+
Sbjct: 374 LL 375



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 20/199 (10%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YS +++ L       +A +LL  ++ +K   +S   F ++++                 Y
Sbjct: 195 YSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDG----------------Y 238

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL--EILDYGYSP 127
                LD A +    + +H           +ID + R     V  GF L  +++  G  P
Sbjct: 239 CKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCG--DVDKGFALLEKMVSRGCKP 296

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            V  + VL+  LCK GK+ +A  +     + G    AV+++ + +G CK   LD    L 
Sbjct: 297 DVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLL 356

Query: 188 SVMEGSGMRPDVYTYSALI 206
           + +   G   DV  +  L+
Sbjct: 357 TSIRDKGRVTDVVAFETLL 375


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 208/392 (53%), Gaps = 13/392 (3%)

Query: 68   VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            V+++ G + DA+Q F  + K      A+    LI+ + +     + +  + E +      
Sbjct: 1026 VWMENG-IPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLH-EKMKGNCKG 1083

Query: 128  SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
             V+ + +++  LCK+G   +A  +F E    G+    V +++L++G C+   L E     
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 1143

Query: 188  SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
              MEG G+  DVYTY++LI+GL +     +    L+ M +RG +P+   FT LIDG CK 
Sbjct: 1144 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 1203

Query: 248  GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            G++       EA++I++ M   G  PD +TY  L++G C  G LE A  + + +  RGI+
Sbjct: 1204 GKVG------EAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK 1257

Query: 308  LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            L+  ++  LI+G+C+  K+ EA R   EM   GLKP   TY  +I   C++G  +T  +L
Sbjct: 1258 LNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 1317

Query: 368  LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              EM++ G    + TY  L++GLCK+G L+ A  L  ++      P+   ++ILL+G C+
Sbjct: 1318 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCR 1377

Query: 428  HGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             G  E+    FD++ S+ GL  D   Y  L++
Sbjct: 1378 AGKLEEAWKQFDEI-SKNGLEPDTIAYNILIN 1408



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 194/359 (54%), Gaps = 9/359 (2%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            +ID + +  + T  L  + E++  G  P V V++ LM  LC+ G++K+A   F E   RG
Sbjct: 1091 IIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 1150

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            + A   ++N+LI+G  +A    E     ++M   G  PD +T++ LI+GLCKE ++ +A+
Sbjct: 1151 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQ 1210

Query: 220  LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             +L  M  +G  P+ + + TL++G C      + G +++A K+ + +   G+  +  +Y 
Sbjct: 1211 QILELMRHKGKEPDILTYNTLMNGLC------LVGQLEDATKLFESLADRGIKLNVFSYN 1264

Query: 280  ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            IL++G+CK+  ++ A    +EM  +G++   V +  LI   C+ G+V  A+++  EM   
Sbjct: 1265 ILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC 1324

Query: 340  GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            G     +TY +++D  CKNG  +    L + ++   H P +E ++ L++G+C+ G+L+ A
Sbjct: 1325 GQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEA 1384

Query: 400  NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
                D +   G+ PD I YNIL+ G C  G   +  KL     EKG + D   +  ++ 
Sbjct: 1385 WKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ 1443



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 192/367 (52%), Gaps = 7/367 (1%)

Query: 57   LPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
            LP +V+  +LM      G L +A++ F+ +              LI  + R  L      
Sbjct: 1117 LPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTW 1176

Query: 116  FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            F   ++D G+SP  + F +L+  LCKEGK+ +AQ + +    +G     +++NTL+NG C
Sbjct: 1177 FLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLC 1236

Query: 176  KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                L++  +L   +   G++ +V++Y+ LING CK+ ++D+A     EM  +GL P+ V
Sbjct: 1237 LVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTV 1296

Query: 236  IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
             + TLI   C++GR+      + A+K+  EM T G      TY +LLDG CK G LE A+
Sbjct: 1297 TYNTLIGALCQSGRV------RTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAM 1350

Query: 296  DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            D+ + + K   + +   F+ L+ G CR GK+ EA +   E+ K GL+PD   Y ++I+  
Sbjct: 1351 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 1410

Query: 356  CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            C  G      +LL +M   G LP   T+N ++  L K  ++  A  LL+ M +    PD+
Sbjct: 1411 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDE 1470

Query: 416  ITYNILL 422
               ++LL
Sbjct: 1471 AVTSMLL 1477



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 170/341 (49%), Gaps = 6/341 (1%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            L+D + R       L F+ E+   G S  VY +N L+H L + G  K+     +    RG
Sbjct: 1126 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 1185

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                A +F  LI+G CK   + E  ++  +M   G  PD+ TY+ L+NGLC   +L+DA 
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDAT 1245

Query: 220  LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             L   + +RG+  N   +  LI+G+CK+ +ID      EA +  +EM   GL P  +TY 
Sbjct: 1246 KLFESLADRGIKLNVFSYNILINGYCKDQKID------EAFRFFEEMRPKGLKPSTVTYN 1299

Query: 280  ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
             L+   C+ G + +A  +  EM   G  L    +  L+ G C+ G + EA  + + + K 
Sbjct: 1300 TLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKT 1359

Query: 340  GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              KP+   +++++D  C+ G  +  ++   E+  +G  P    YN L+NGLC  G L  A
Sbjct: 1360 EHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEA 1419

Query: 400  NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
              LL  M + G +PD IT+N++++   K     +  +L  E
Sbjct: 1420 VKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEE 1460



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 173/348 (49%), Gaps = 12/348 (3%)

Query: 111  TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            +     Y +I D G  P +Y  N+L+H  C    +     VF  F KRG    AV+  TL
Sbjct: 963  STVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTL 1022

Query: 171  INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
            + G      + +  +L   M   G+  D  TY  LINGLCK  +   A + LHE  +   
Sbjct: 1023 VKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLA-IKLHEKMKGNC 1081

Query: 231  TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
              +   +  +ID  CK+G    A DM        EM   G+ PD + Y+ L+DG C+ G 
Sbjct: 1082 KGDVFTYGMIIDALCKDGMTTEALDM------FSEMIGAGILPDVVVYSSLMDGLCRFGR 1135

Query: 291  LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
            L+ AL+  KEM  RGI  D   + +LI G  R G   E    L  M+  G  PD  T+T+
Sbjct: 1136 LKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTI 1195

Query: 351  VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            +ID  CK G      ++L+ MR  G  P + TYN LMNGLC  GQL++A  L +++ D G
Sbjct: 1196 LIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG 1255

Query: 411  VVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            +  +  +YNIL+ G+CK    ++    F++++  KGL      Y +L+
Sbjct: 1256 IKLNVFSYNILINGYCKDQKIDEAFRFFEEMRP-KGLKPSTVTYNTLI 1302


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 11/346 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+ + G  P+V  +N ++H L + G ++ AQ+ F E    GL    +++N+L+NG+CKA
Sbjct: 299 LEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKA 358

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            NL E   L   +  +G+ P V TY+  I+G C+   L++A +L  EM E+G  PN   +
Sbjct: 359 GNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 418

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T L+ G      + M      AR+  DEM + GL PD   Y   +      GD+  AL++
Sbjct: 419 TILMKGSLNVCSLAM------AREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALEL 472

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           R+ ++  GI  D V +  LI G C+ G + +A+ +  +M+  GL+PD  TYT +I   C+
Sbjct: 473 REVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCE 532

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +   ++   M SDG LP+  T+  +++  C+ G L +A      ML+ GV P++IT
Sbjct: 533 RGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEIT 592

Query: 418 YNILLEGHCKHGNPE----DFDKLQSEKGLVSDYACYTSLVSKSSK 459
           YN+L+   C+ G  +     F ++  E+GLV++   YT L+  + K
Sbjct: 593 YNVLIHALCRMGRTQLASHHFHEML-ERGLVANKYTYTLLIDGNCK 637



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 170/364 (46%), Gaps = 41/364 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I  ++++ L       + E+   G  P V  +N L++  CK G +K+A ++F +  + G
Sbjct: 316 MIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAG 375

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T +++N  I+G+C+  +L+E   LK  M   G  P+V TY+ L+ G      L  A 
Sbjct: 376 LAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAR 435

Query: 220 LLLHEMCERGLTPN-----------------------------------DVIFTTLIDGH 244
               EM  +GL P+                                    V +  LI G 
Sbjct: 436 EFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGL 495

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G      ++K+A+++  +M +NGL PD ITYT L+   C+ G L  A  I   MI  
Sbjct: 496 CKTG------NLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISD 549

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+    V FT +I  +CR G +  A    R+ML+ G++P++ TY ++I   C+ G T+  
Sbjct: 550 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 609

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                EM   G +    TY  L++G CK G  ++A      M   G+ PD +T+  L++G
Sbjct: 610 SHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKG 669

Query: 425 HCKH 428
              H
Sbjct: 670 FDGH 673



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 165/347 (47%), Gaps = 42/347 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA--VSFNTLINGHCK 176
           E+L  G  PS+  +N L+    KEG+     M+  E   RG       V++N +I G  +
Sbjct: 194 EMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTR 253

Query: 177 ------AKNLDEGFRL----------------------KSV------MEGSGMRPDVYTY 202
                 A  L EG RL                      K V      ME  G+ P V TY
Sbjct: 254 KGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTY 313

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
           +A+I+GL +   ++ A++   EM   GL P+ + + +L++G+CK      AG++KEA  +
Sbjct: 314 NAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCK------AGNLKEALLL 367

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
             ++   GL P  +TY I +DG+C+ GDLE A  +++EM ++G   +   +T L+ G   
Sbjct: 368 FGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLN 427

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
              +  A     EML  GL+PD   Y   I      GD      L + +  +G      T
Sbjct: 428 VCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVT 487

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           YN L++GLCK G LK+A  L   M+  G+ PD ITY  L+  HC+ G
Sbjct: 488 YNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERG 534



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 149/331 (45%), Gaps = 21/331 (6%)

Query: 138 KLCKEGKIKDAQM---------VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           K  KE K +DA +          F E    G+       N ++     A   D+   +  
Sbjct: 134 KYSKECKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHE 193

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPNDVIFTTLIDGHCK 246
            M   G+ P + TY+ L++   KE R D   +LL EM  RG    PNDV +  +I G  +
Sbjct: 194 EMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTR 253

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G ++ A ++ E  ++  +           TY  L+ G    G ++   D++ EM   GI
Sbjct: 254 KGDLEEAAELVEGMRLSKK-------ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGI 306

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               V + A+I G  + G V  A+    EM  +GL PD  TY  +++ +CK G+ K    
Sbjct: 307 MPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALL 366

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH- 425
           L  ++R  G  P V TYN  ++G C+ G L+ A +L + M + G +P+  TY IL++G  
Sbjct: 367 LFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSL 426

Query: 426 --CKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
             C      +F      KGL  D   Y + +
Sbjct: 427 NVCSLAMAREFFDEMLSKGLQPDCFAYNTRI 457


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 178/334 (53%), Gaps = 13/334 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  Y FN L+   C+  ++  A+ +FD+   RG     VS+ TLI G C+A  +DE 
Sbjct: 183 GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 242

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+    +PD++ Y+AL+ GLC   R ++  L+L  M E G  P+   +  ++D 
Sbjct: 243 VELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 298

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+  +       KEA +++ EM   GL P  +T T +++ +CKEG +  AL + + M  
Sbjct: 299 RCRERKA------KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKL 352

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG + +   + AL+ GFC  GKV +A  +L +M   G+ PD  TY ++I   C +G  ++
Sbjct: 353 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 412

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            FRLL+ M  DG +    TYNAL+N LCK G+   A  L D++   G+ P+ +T+N L+ 
Sbjct: 413 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 472

Query: 424 GHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           G CK G  +    F +     G   D   Y+S +
Sbjct: 473 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 506



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 177/353 (50%), Gaps = 10/353 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L  A++   L+ +  +R  A     LI    RTN   V    + ++   G++  V  +  
Sbjct: 169 LARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAT 228

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+  LC+ G+I +A  +F E  +  +H  A     L+ G C A+  +EG  +   M+  G
Sbjct: 229 LIEGLCEAGRIDEAVELFGEMDQPDMHMYAA----LVKGLCNAERGEEGLLMLRRMKELG 284

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            RP    Y+A+++  C+E +  +AE +L EM E+GL P  V  T +I+ +CK GR     
Sbjct: 285 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR----- 339

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            M +A ++++ M   G  P+  TY  L+ GFC EG +  A+ +  +M   G+  D V + 
Sbjct: 340 -MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYN 398

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI G C  G +  A R+LR M   GL  D  TY  +I+  CK+G T     L   + + 
Sbjct: 399 LLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETR 458

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           G  P   T+N+L+NGLCK G+   A   L+ M+  G  PD  TY+  +E  CK
Sbjct: 459 GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 511



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 6/299 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V+ +N L+   C EGK+  A  + ++    G++  AV++N LI G C   +++  
Sbjct: 354 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 413

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +MEG G+  D YTY+ALIN LCK+ R D A  L   +  RG+ PN V F +LI+G
Sbjct: 414 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 473

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+G+ D+A       K +++M + G  PD  TY+  ++  CK    +  L    EM++
Sbjct: 474 LCKSGKADIAW------KFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ 527

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + ++   V +T +I    +        R   EM+  G  PD  TYT  +  +C  G    
Sbjct: 528 KDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNE 587

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +L EM  +G       YN LM+G    GQ  +A  +L  M  +  VP+  TY ILL
Sbjct: 588 AENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILL 646



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 156/296 (52%), Gaps = 13/296 (4%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           TA ++N +I   C+  +L    R  S+M  SG RPD YT+++LI G C+ N++D A  L 
Sbjct: 152 TAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLF 211

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M  RG   + V + TLI+G C+ GRID      EA ++  EM      PD   Y  L+
Sbjct: 212 DKMPLRGFAQDVVSYATLIEGLCEAGRID------EAVELFGEMD----QPDMHMYAALV 261

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G C     E  L + + M + G      A+ A++   CR  K  EAE ML+EM + GL 
Sbjct: 262 KGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLA 321

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P   T T VI+ +CK G      R+L+ M+  G  P V TYNAL+ G C  G++  A  L
Sbjct: 322 PCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTL 381

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVS 455
           L+ M   GV PD +TYN+L+ G C  G+ E      +L    GL++D   Y +L++
Sbjct: 382 LNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALIN 437



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 165/344 (47%), Gaps = 41/344 (11%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G+ PS   +  ++   C+E K K+A+ +  E  ++GL    V+   +IN +CK   + 
Sbjct: 282 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 341

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  R+  +M+  G +P+V+TY+AL+ G C E ++  A  LL++M   G+ P+ V +  LI
Sbjct: 342 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 401

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C +G I+       A +++  M  +GL  D+ TY  L++  CK+G  + A  +   +
Sbjct: 402 RGQCIDGHIE------SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 455

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RGI+ + V F +LI+G C+ GK   A + L +M+  G  PD  TY+  I+  CK   +
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 515

Query: 362 KTGF-----------------------RLLKE------------MRSDGHLPAVETYNAL 386
           + G                        +LLKE            M S G  P V TY   
Sbjct: 516 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 575

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   C  G+L  A  +L  M   GV  D + YN L++GH   G 
Sbjct: 576 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 619



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 172/385 (44%), Gaps = 23/385 (5%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL+      G  D A   F  L     +  A     LI+ + ++    +   F  +++ 
Sbjct: 433 NALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVS 492

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +P  Y ++  +  LCK    ++      E  ++ +  + V++  +I+   K +N   
Sbjct: 493 AGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGL 552

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             R    M  SG  PDV TY+  +   C E RL++AE +L EM + G+T + + + TL+D
Sbjct: 553 VARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMD 612

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           GH   G+ D       A  I+ +M +    P++ TY ILL    +   +E  L +    +
Sbjct: 613 GHASIGQTD------HAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGV 666

Query: 303 KRGIELDNV-----------------AFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            + IEL +V                  +++++ GF   G+  EA  ++  M +  +  ++
Sbjct: 667 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 726

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             YT ++ CFCK+      + L+  M   G +P + +Y  L++GL   GQ   A  +   
Sbjct: 727 DIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMN 786

Query: 406 MLDLGVVPDDITYNILLEGHCKHGN 430
                  PD+I + ++++G  K G+
Sbjct: 787 SRWKDYSPDEIVWKVIIDGLIKKGH 811



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 122/291 (41%), Gaps = 23/291 (7%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E++  G +P V  +   M   C EG++ +A+ V  E  K G+    +++NTL++GH  
Sbjct: 557 WGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS 616

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALIN-----------------GLCKENRLDDAE 219
               D    +   M      P+ +TY  L+                  G+ K   L D  
Sbjct: 617 IGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVF 676

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M +    PN   ++++++G  ++GR +      EA  +V  M  + ++ ++  YT
Sbjct: 677 GLFDVMKKNEFLPNSGTYSSILEGFSEDGRTE------EATSLVSLMKEDSISLNEDIYT 730

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+  FCK      A  +   MI+ G     +++  L+SG    G+  +A+ +       
Sbjct: 731 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWK 790

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
              PD+  + ++ID   K G +     ++  +      P+ +TY  L   L
Sbjct: 791 DYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEEL 841


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 200/415 (48%), Gaps = 33/415 (7%)

Query: 50   LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
            +  RG +        +++ Y   G + +A +    + +  F +       +I      +L
Sbjct: 822  MSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSL 881

Query: 110  PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                + F+ ++   G SP++  ++ ++  LCK G +K A  + +E  K G      +  +
Sbjct: 882  VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 941

Query: 170  LINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            LI+G CK    +  FRL   ++     +P+V+TY+A+I+G CKE +L  AE+L   M E+
Sbjct: 942  LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 1001

Query: 229  GLTPNDVIFTTLIDGHCKNGRIDMAGDMKE-------------ARKIVDEMCTNG----- 270
            GL PN   +TTLIDGHCK G    A ++ E                IVD +C  G     
Sbjct: 1002 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEA 1061

Query: 271  -----------LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
                       +  D +TYTIL+   CK  D+  AL    +M K G + D   +T LI+ 
Sbjct: 1062 FKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAA 1121

Query: 320  FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            FCR   + ++E++  E++K+GL P   TYT +I  +C+        +  ++M   G  P 
Sbjct: 1122 FCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPD 1181

Query: 380  VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              +Y AL++GLCK  +L  A  L DTM+D G+ P ++T   L   +CK    EDF
Sbjct: 1182 SISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCK---TEDF 1233



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 170/315 (53%), Gaps = 10/315 (3%)

Query: 145  IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
            ++ A  VFDE   RG++  + ++  +I G+C+  N+ E  R    M   G   D  T + 
Sbjct: 812  VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTL 871

Query: 205  LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
            +I   C+++ ++ A    H++ + GL+PN + ++++I G CK G +      K+A ++++
Sbjct: 872  IITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSV------KQAFELLE 925

Query: 265  EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRG 323
            EM  NG  P+  T+T L+ G CK+G  E A  +  ++I+      NV  +TA+ISG+C+ 
Sbjct: 926  EMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKE 985

Query: 324  GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
             K+  AE +   M + GL P+  TYT +ID  CK G+    + L++ M ++G  P   TY
Sbjct: 986  EKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTY 1045

Query: 384  NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSE 440
            N++++GLCK G+ + A  LL+T     +  D +TY IL+   CK  +      F     +
Sbjct: 1046 NSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFK 1105

Query: 441  KGLVSDYACYTSLVS 455
             G   D   YT+L++
Sbjct: 1106 VGFQPDIHLYTTLIA 1120



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 44/329 (13%)

Query: 124  GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
             Y P+V+ +  ++   CKE K+  A+M+F+   ++GL     ++ TLI+GHCKA N  + 
Sbjct: 967  NYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKA 1026

Query: 184  FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-------------------ELLLHE 224
            + L  +M   G  P+  TY+++++GLCK  R ++A                    +L+ E
Sbjct: 1027 YELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISE 1086

Query: 225  MCER----------------GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
             C+R                G  P+  ++TTLI   C+         MK++ K+ DE+  
Sbjct: 1087 QCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNM------MKDSEKLFDEVIK 1140

Query: 269  NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             GL P K TYT ++ G+C+E  +  A+   ++M   G   D++++ ALISG C+  ++ E
Sbjct: 1141 LGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDE 1200

Query: 329  AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
            A ++   M+  GL P + T   +   +CK  D  +   +L+ +     +  V T   L+ 
Sbjct: 1201 ARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHT---LIR 1257

Query: 389  GLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
             LC   ++  A +    +LD  V  D +T
Sbjct: 1258 KLCCEKKVALAALFFHKLLDKEVNVDRVT 1286



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 120/286 (41%), Gaps = 76/286 (26%)

Query: 244  HCKNGRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C  G     G +KEA  ++ +M   GL    ++   I+L    +   +E A ++  EM 
Sbjct: 765  ECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVA-AEMRLVEYAGNVFDEMS 823

Query: 303  KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF------- 355
             RG+  D+  +  +I G+CR G V+EA+R + EM++ G   D+AT T++I  F       
Sbjct: 824  ARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVN 883

Query: 356  ----------------------------CKNGDTKTGFRLLKEM---------------- 371
                                        CK G  K  F LL+EM                
Sbjct: 884  RAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLI 943

Query: 372  --------------------RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
                                RSD + P V TY A+++G CK  +L  A ML + M + G+
Sbjct: 944  HGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 1003

Query: 412  VPDDITYNILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
            VP+  TY  L++GHCK GN     +  +L S +G   +   Y S+V
Sbjct: 1004 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIV 1049



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            LI    R N+   +   + E++  G +P+   +  ++   C+E K+  A   F +    G
Sbjct: 1118 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 1177

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                ++S+  LI+G CK   LDE  +L   M   G+ P   T   L    CK      A 
Sbjct: 1178 CAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAM 1237

Query: 220  LLLHEM-----------------CERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            ++L  +                 CE+ +    + F  L+D      R+ +A 
Sbjct: 1238 VILERLNKKLWIRTVHTLIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAA 1289



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 111  TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++ + F+ ++ D+G +P    +  L+  LCKE ++ +A+ ++D    +GL    V+  TL
Sbjct: 1164 SLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 1223

Query: 171  INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
               +CK ++         ++E    +  + T   LI  LC E ++  A L  H++ ++ +
Sbjct: 1224 TYEYCKTEDFASAM---VILERLNKKLWIRTVHTLIRKLCCEKKVALAALFFHKLLDKEV 1280

Query: 231  TPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
              + V          ++ +  +  D+ E
Sbjct: 1281 NVDRVTLAAFNTACIESNKYALVSDLSE 1308


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 238/495 (48%), Gaps = 46/495 (9%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG--MGSSASLFASILETRG------ 54
           F+  +  Y+ ++  L   ++  + + LL  IV  K   +G   +    +L   G      
Sbjct: 92  FQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGE 151

Query: 55  -THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
            + +  LVLD L+  YV +G  D+AI      ++  F      C  L++R++      + 
Sbjct: 152 HSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMA 211

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +  Y  +   G +P+ Y + + +  LC++G  ++A  VF E  + G++  AV+ +T I G
Sbjct: 212 VAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEG 271

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C  K  D G+     +  +    D + Y+A+I G C E +L +AE +  +M   G+ P+
Sbjct: 272 LCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPD 331

Query: 234 DVIFTTLIDGHCKNGRI--------DMAG------------------DMKEARKIVD--- 264
             I+  LI  +CK G +        DM                    +M  A ++VD   
Sbjct: 332 GYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFK 391

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           E   +G+  D++ Y I++D  CK G +E A+++  EM  R + LD V +T LI+G+C  G
Sbjct: 392 EFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQG 451

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           K+V+A+ M  EM + G++PD  TY +++  F +NG  K    LL  + + G  P   T+N
Sbjct: 452 KLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHN 511

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSE 440
            ++ GLC  G++K A   L+T+ D  +      Y+ +++G+CK        E F +L  +
Sbjct: 512 RIIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCKANFTRKAYELFSRLSKQ 567

Query: 441 KGLVSDYACYTSLVS 455
             LV   +C+  L S
Sbjct: 568 GILVKKKSCFKLLSS 582



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 164/329 (49%), Gaps = 29/329 (8%)

Query: 118 LEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE+LD     G  P+    N ++  LC  GK+K+A+   +    + L     +++ +++G
Sbjct: 492 LELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDG 547

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +CKA    + + L S +   G+     +   L++ LC E   D A +LL  M    + PN
Sbjct: 548 YCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPN 607

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            +++  LI   C++G      DMK A+ + D +   G+ PD ITYT++++G+C+   L  
Sbjct: 608 QIMYGKLIGAFCRDG------DMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLRE 661

Query: 294 ALDIRKEMIKRGIELDNVAFTALISG-------------FCRGGKV--VEAERMLREMLK 338
           A DI  +M +RGI+ D + +T ++ G             F +G +   ++A     EM +
Sbjct: 662 ARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKE 721

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
           +G+KPD   YT++ID  CK  + +    L  EM + G  P + TY AL++  C  G +  
Sbjct: 722 MGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDR 781

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           A  L++ M   G+ PD    ++L  G  K
Sbjct: 782 AITLVNEMSFKGIEPDSRAMSVLHRGILK 810



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 184/427 (43%), Gaps = 90/427 (21%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-----QMV-------------------- 151
           ++++++ G +P  Y++  L+H  CK G +  A      MV                    
Sbjct: 320 FIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCE 379

Query: 152 ----------FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
                     F EF   G+    V +N +++  CK   ++E   L + M+G  M  DV  
Sbjct: 380 MGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVH 439

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ LI G C + +L DA+ +  EM ERG+ P+ V +  L+ G  +NG        KEA +
Sbjct: 440 YTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGL------KKEALE 493

Query: 262 IVDEMCTNGLNPDKIT-------------------------------YTILLDGFCKEGD 290
           ++D + T GL P+  T                               Y+ ++DG+CK   
Sbjct: 494 LLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYSAMVDGYCKANF 553

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
              A ++   + K+GI +   +   L+S  C  G+  +A  +L  ML + ++P+   Y  
Sbjct: 554 TRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGK 613

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I  FC++GD K    +   +   G  P V TY  ++NG C+   L+ A  + + M + G
Sbjct: 614 LIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERG 673

Query: 411 VVPDDITYNILLEGHCK------------HGNPED------FDKLQSEKGLVSDYACYTS 452
           + PD ITY ++L+GH K             G+ E+      F     E G+  D  CYT 
Sbjct: 674 IKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTV 733

Query: 453 LVSKSSK 459
           L+    K
Sbjct: 734 LIDSHCK 740



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 168/354 (47%), Gaps = 58/354 (16%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           S  V  +  L+   C +GK+ DA+ +F+E  +RG+    V++N L+ G  +     E   
Sbjct: 434 SLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALE 493

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   +   G++P+  T++ +I GLC   ++ +AE  L+ + ++ L      ++ ++DG+C
Sbjct: 494 LLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLEN----YSAMVDGYC 549

Query: 246 KN----------GRIDMAGDM---KEARKIVDEMCTNG----------------LNPDKI 276
           K            R+   G +   K   K++  +C  G                + P++I
Sbjct: 550 KANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQI 609

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  L+  FC++GD++ A  +   +++RGI  D + +T +I+G+CR   + EA  +  +M
Sbjct: 610 MYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDM 669

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK--------------------EMRSDGH 376
            + G+KPD  TYT+V+D     G +K   ++ +                    EM+  G 
Sbjct: 670 KERGIKPDVITYTVVLD-----GHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGI 724

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            P V  Y  L++  CK   L++A  L D M+  G+ PD +TY  LL   C  G+
Sbjct: 725 KPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGD 778



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 129/273 (47%), Gaps = 21/273 (7%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y    F   A + F  L K    +  + C  L+  +         L     +L     P+
Sbjct: 548 YCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPN 607

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
             ++  L+   C++G +K AQ+VFD   +RG+    +++  +ING+C+   L E   + +
Sbjct: 608 QIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFN 667

Query: 189 VMEGSGMRPDVYTYSALINGLCK---------------ENRLDDAELLLHEMCERGLTPN 233
            M+  G++PDV TY+ +++G  K               E    DA     EM E G+ P+
Sbjct: 668 DMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPD 727

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V +T LID HCK        ++++A  + DEM   GL PD +TYT LL   C  GD++ 
Sbjct: 728 VVCYTVLIDSHCKTN------NLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDR 781

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
           A+ +  EM  +GIE D+ A + L  G  +  KV
Sbjct: 782 AITLVNEMSFKGIEPDSRAMSVLHRGILKARKV 814



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 112/267 (41%), Gaps = 32/267 (11%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC--ERGLTPNDV------------ 235
           ++ SG + +V TY+ALI  LC+       + LL E+   +  +   D+            
Sbjct: 87  LKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGG 146

Query: 236 ------------IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
                       +   L+  + + G  D A D     K        G  P  ++   L++
Sbjct: 147 EVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTK------RRGFVPHIMSCNFLMN 200

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
              + G ++ A+ I + + + G+  ++  +   I   CR G   EA  + REM + G+ P
Sbjct: 201 RLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNP 260

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +  T +  I+  C +  +  G+  L+ +R+         Y A++ G C   +LK A  + 
Sbjct: 261 NAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVF 320

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGN 430
             M++ G+ PD   Y  L+  +CK GN
Sbjct: 321 IDMVNEGIAPDGYIYGALIHAYCKAGN 347


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 207/425 (48%), Gaps = 9/425 (2%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGF 74
           H  + H  ++   DLL   + K G+  SA +    + + G      +L+ L+  Y  +G 
Sbjct: 102 HLSINHTFNTY--DLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGK 159

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           LD A      +  +  ++       L++ +++ NL    +  + E L+  + P VY FN+
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGS 193
           L+  LC+ G+I  A   F   G  G     VS+NTLING C+   + +G  L K  M   
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIK 279

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+ PDV TY+++I+G CK   +  A  L  EM   G+ PND  F  LIDG  K       
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGK------V 333

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G+M+ A  + ++M   G  PD +T+T L+DG+C+EG++   L + +EM  R +  +   +
Sbjct: 334 GNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI+  C+  ++ EA   LR +    + P    Y  VID FCK G       ++ EM+ 
Sbjct: 394 AVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE 453

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P   T+  L+ G C  G++  A      M+++  VPD+IT N L+    K G P +
Sbjct: 454 KKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNE 513

Query: 434 FDKLQ 438
             +++
Sbjct: 514 ASQIK 518



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 5/317 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P   +  +L+    + GK+  A+   +E    G+  +   +N L+N   K   +DE 
Sbjct: 139 GILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEA 198

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L          PDVY+++ LI GLC+   +D A      M   G  P+ V + TLI+G
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLING 258

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+   I    D+     + ++M   G++PD ITYT ++ G+CK GD+++A ++  EM+ 
Sbjct: 259 FCRVNEISKGHDL-----LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVS 313

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI+ ++  F  LI GF + G +  A  M  +ML +G  PD  T+T +ID +C+ G+   
Sbjct: 314 SGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQ 373

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           G +L +EM+     P V TY  L+N LCK  +++ A   L  +    VVP    YN +++
Sbjct: 374 GLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVID 433

Query: 424 GHCKHGNPEDFDKLQSE 440
           G CK G  ++ + + +E
Sbjct: 434 GFCKAGKVDEANFIVAE 450



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+ + FNVL+    K G ++ A +++++    G     V+F +LI+G+C+  
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++G +L   M+   + P+VYTY+ LIN LCKENR+ +A   L  +    + P   I+ 
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG CK G++D      EA  IV EM      PDKIT+TIL+ G C +G +  A+   
Sbjct: 430 PVIDGFCKAGKVD------EANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTF 483

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            +MI+     D +   +LIS   + G   EA ++ +  L+
Sbjct: 484 YKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQ 523


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 168/323 (52%), Gaps = 17/323 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+   SP V  +N L++   KEGK  +A  ++DE   RG+    +++N++I+G CK  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 374

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD    +  +M   G  PDV+T++ LI+G C   R+DD   LLHEM  RGL  N V + 
Sbjct: 375 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 434

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C      + GD+  A  +  +M ++G+ PD +T   LLDG C  G L+ AL++ 
Sbjct: 435 TLIHGFC------LVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 488

Query: 299 KEMIK-----------RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           K M K            G+E D + +  LI G    GK +EAE +  EM   G+ PD  T
Sbjct: 489 KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y+ +ID  CK        ++   M S    P V T+N L+NG CK G++ +   L   M 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 608

Query: 408 DLGVVPDDITYNILLEGHCKHGN 430
             G+V D I Y  L+ G  K GN
Sbjct: 609 RRGIVADAIIYITLIYGFRKVGN 631



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 184/348 (52%), Gaps = 17/348 (4%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ DR+      +  L F+ ++ +    P+V  F  LM+ LC+EG+I +A  + D   + 
Sbjct: 160 CVEDRV------SEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           GL  T +++ T+++G CK  +      L + + E S + P+V  YSA+I+ LCK+ R  D
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ L  EM E+G+ P+   + ++I G C +GR        +A +++ EM    ++PD +T
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR------WSDAEQLLQEMLERKISPDVVT 327

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++ F KEG    A ++  EM+ RGI  + + + ++I GFC+  ++  AE M   M 
Sbjct: 328 YNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMA 387

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  PD  T+T +ID +C       G  LL EM   G +    TYN L++G C  G L 
Sbjct: 388 TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLN 447

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
            A  L   M+  GV PD +T N LL+G C +G  +D    F  +Q  K
Sbjct: 448 AALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 495



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 190/369 (51%), Gaps = 20/369 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    +     + E+ + G  P ++ +N ++   C  G+  DA+ +  E  +R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++N LIN   K     E   L   M   G+ P+  TY+++I+G CK++RLD AE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 380

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M  +G +P+   FTTLIDG+C   RID      +  +++ EM   GL  + +TY 
Sbjct: 381 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRID------DGMELLHEMPRRGLVANTVTYN 434

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC  GDL +ALD+ ++MI  G+  D V    L+ G C  GK+ +A  M + M K 
Sbjct: 435 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS 494

Query: 340 -----------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                      G++PD  TY ++I      G       L +EM   G +P   TY+++++
Sbjct: 495 KMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLCK  +L  A  +  +M      P+ +T+N L+ G+CK G  +D  +L  E   +G+V+
Sbjct: 555 GLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 446 DYACYTSLV 454
           D   Y +L+
Sbjct: 615 DAIIYITLI 623



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 196/384 (51%), Gaps = 10/384 (2%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           L+DAI  F  +LR          C+ L+  ++R   P + +  Y ++        +Y FN
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCK-LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFN 118

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+   C   K+  A   F +  K GLH   V+F TL++G C    + E       M  +
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFET 178

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
             RP+V T++ L+NGLC+E R+ +A  LL  M E GL P  + + T++DG CK G  D  
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG--DTV 236

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
             +   RK+ +    + + P+ + Y+ ++D  CK+G    A ++  EM ++GI  D   +
Sbjct: 237 SALNLLRKMEE---VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            ++I GFC  G+  +AE++L+EML+  + PD  TY  +I+ F K G       L  EM  
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLP 353

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P   TYN++++G CK  +L  A  +   M   G  PD  T+  L++G+C     +D
Sbjct: 354 RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDD 413

Query: 434 FDKLQSE---KGLVSDYACYTSLV 454
             +L  E   +GLV++   Y +L+
Sbjct: 414 GMELLHEMPRRGLVANTVTYNTLI 437



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 100/178 (56%), Gaps = 6/178 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N+L+  L  EGK  +A+ +++E   RG+    ++++++I+G CK   LDE 
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   M      P+V T++ LING CK  R+DD   L  EM  RG+  + +I+ TLI G
Sbjct: 566 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 625

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
             K G I+ A D      I  EM ++G+ PD IT   +L GF  + +LE A+ + +++
Sbjct: 626 FRKVGNINGALD------IFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 207/425 (48%), Gaps = 9/425 (2%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGF 74
           H  + H  ++   DLL   + K G+  SA +    + + G      +L+ L+  Y  +G 
Sbjct: 102 HLSINHTFNTY--DLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGK 159

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           LD A      +  +  ++       L++ +++ NL    +  + E L+  + P VY FN+
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGS 193
           L+  LC+ G+I  A   F   G  G     VS+NTLING C+   + +G  L K  M   
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIK 279

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+ PDV TY+++I+G CK   +  A  L  EM   G+ PND  F  LIDG  K       
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGK------V 333

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G+M+ A  + ++M   G  PD +T+T L+DG+C+EG++   L + +EM  R +  +   +
Sbjct: 334 GNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI+  C+  ++ EA   LR +    + P    Y  VID FCK G       ++ EM+ 
Sbjct: 394 AVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE 453

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P   T+  L+ G C  G++  A      M+++  VPD+IT N L+    K G P +
Sbjct: 454 KKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNE 513

Query: 434 FDKLQ 438
             +++
Sbjct: 514 ASQIK 518



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 5/317 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P   +  +L+    + GK+  A+   +E    G+  +   +N L+N   K   +DE 
Sbjct: 139 GILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEA 198

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L          PDVY+++ LI GLC+   +D A      M   G  P+ V + TLI+G
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLING 258

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+   I    D+     + ++M   G++PD ITYT ++ G+CK GD+++A ++  EM+ 
Sbjct: 259 FCRVNEISKGHDL-----LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVS 313

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI+ ++  F  LI GF + G +  A  M  +ML +G  PD  T+T +ID +C+ G+   
Sbjct: 314 SGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQ 373

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           G +L +EM+     P V TY  L+N LCK  +++ A   L  +    VVP    YN +++
Sbjct: 374 GLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVID 433

Query: 424 GHCKHGNPEDFDKLQSE 440
           G CK G  ++ + + +E
Sbjct: 434 GFCKAGKVDEANFIVAE 450



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+ + FNVL+    K G ++ A +++++    G     V+F +LI+G+C+  
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++G +L   M+   + P+VYTY+ LIN LCKENR+ +A   L  +    + P   I+ 
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG CK G++D      EA  IV EM      PDKIT+TIL+ G C +G +  A+   
Sbjct: 430 PVIDGFCKAGKVD------EANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTF 483

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            +MI+     D +   +LIS   + G   EA ++ +  L+
Sbjct: 484 YKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQ 523


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 179/333 (53%), Gaps = 14/333 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  + ++++ G +P V  FN L++ LC EG++ +A  + ++   +GLH   V++ T++N
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK  +      L S ME + ++PDV  YSA+I+ LCK+    DA+ L  EM E+G+ P
Sbjct: 270 GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 329

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   +  +IDG C  GR        +A++++ +M    +NPD +T+  L+    KEG L 
Sbjct: 330 NVFTYNCMIDGFCSFGR------WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLF 383

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM+ R I  D V + ++I GFC+  +  +A+ M   M      PD  T+  +I
Sbjct: 384 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTII 439

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D +C+      G +LL+E+   G +    TYN L++G C+   L  A  L   M+  GV 
Sbjct: 440 DVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVC 499

Query: 413 PDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           PD IT NILL G C++   E+    F+ +Q  K
Sbjct: 500 PDTITCNILLYGFCENEKLEEALELFEVIQMSK 532



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 212/454 (46%), Gaps = 48/454 (10%)

Query: 25  QARDLLHLIVSKKGMGSSASLFASILE------TRGTHLPGLVLDALMIVYVDLGFLDDA 78
            +R L+H  V++KG  S  SL     E        G+H                  LDDA
Sbjct: 45  NSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHY--------------FKSLDDA 90

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           I  F  + +      A  C  +I   +R N P V +  Y ++       ++Y FN+L+  
Sbjct: 91  IDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKC 150

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----- 193
            C   K+  +   F +  K G     V+FNTL++G C    + E   L   M  +     
Sbjct: 151 FCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEA 210

Query: 194 ----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                     G+ P V T++ LINGLC E R+ +A  L+++M  +GL  + V + T+++G
Sbjct: 211 VALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK       GD K A  ++ +M    + PD + Y+ ++D  CK+G    A  +  EM++
Sbjct: 271 MCK------MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 324

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +GI  +   +  +I GFC  G+  +A+R+LR+M++  + PD  T+  +I    K G    
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFE 384

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L  EM      P   TYN+++ G CKH +  +A      M DL   PD +T+N +++
Sbjct: 385 AEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH----MFDLMASPDVVTFNTIID 440

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            +C+    ++  +L  E   +GLV++   Y +L+
Sbjct: 441 VYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 474



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 172/341 (50%), Gaps = 10/341 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +IDR+ +    +     + E+L+ G +P+V+ +N ++   C  G+  DAQ +  +  +R 
Sbjct: 302 IIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE 361

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++   ++FN LI+   K   L E  +L   M    + PD  TY+++I G CK NR DDA+
Sbjct: 362 INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAK 421

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M     +P+ V F T+ID +C+  R+D      E  +++ E+   GL  +  TY 
Sbjct: 422 HMFDLMA----SPDVVTFNTIIDVYCRAKRVD------EGMQLLREISRRGLVANTTTYN 471

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC+  +L +A D+ +EMI  G+  D +    L+ GFC   K+ EA  +   +   
Sbjct: 472 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 531

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +  D   Y ++I   CK       + L   +   G  P V+TYN +++G C    + +A
Sbjct: 532 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N+L   M D G  PD+ TYN L+ G  K G  +   +L SE
Sbjct: 592 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE 632



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 158/303 (52%), Gaps = 10/303 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++   +P V  FN L+    KEGK+ +A+ + DE   R +    V++N++I G CK  
Sbjct: 356 DMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHN 415

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D+   +  +M      PDV T++ +I+  C+  R+D+   LL E+  RGL  N   + 
Sbjct: 416 RFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYN 471

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C+   ++ A D+ +      EM ++G+ PD IT  ILL GFC+   LE AL++ 
Sbjct: 472 TLIHGFCEVDNLNAAQDLFQ------EMISHGVCPDTITCNILLYGFCENEKLEEALELF 525

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + +    I+LD VA+  +I G C+G KV EA  +   +   G++PD  TY ++I  FC  
Sbjct: 526 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 585

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L  +M+ +GH P   TYN L+ G  K G++  +  L+  M   G   D  T 
Sbjct: 586 SAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI 645

Query: 419 NIL 421
            ++
Sbjct: 646 KMV 648


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 188/341 (55%), Gaps = 23/341 (6%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +Y FN+L+   C   K+  A   F +  K G H T V+FNTL++G C    + E   L  
Sbjct: 15  IYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFH 74

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M     +P+V T++ L+NGLC+E R+ +A  LL  M E GL PN + + T++DG CK G
Sbjct: 75  QM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 130

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
             D    +   RK+ +    + + PD + Y+ ++DG  K+G    A ++  EM  +GI  
Sbjct: 131 --DTVSALNLLRKMEE---LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V ++ +I+GFC  GK  EA+R+L+EML   + PD  T++ +I+   K GD  +   LL
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLL 245

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNA----NMLLDTMLDL-------GVVPDDIT 417
           +EM S G  P V T N L++GLC  G+LK+A      +  +M+D+       GV PD  T
Sbjct: 246 QEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQT 305

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           YNIL+ G    G   + ++L  E   +G+V D   Y+S+++
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 188/343 (54%), Gaps = 21/343 (6%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  F  LM+ LC+EG++ +A  + D   + GL    +++ T+++G CK  +      L
Sbjct: 79  PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138

Query: 187 KSVMEG-SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              ME  S ++PDV  YSA+I+GL K+ R  DA+ L  EM ++G+ P+ V ++ +I+G C
Sbjct: 139 LRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC 198

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            +G+        EA++++ EM    ++PD +T++ L++   KEGDL SA D+ +EMI  G
Sbjct: 199 SSGK------WSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSG 252

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKV-----------GLKPDDATYTMVIDC 354
           +  + V    L+ G C  GK+ +A  M + M K            G++PD  TY ++I  
Sbjct: 253 VCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG 312

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
               G       L +EM   G +P   TY++++NGLCK  +L  A  + D+M      P+
Sbjct: 313 LINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            +T+N L+ G+CK G  +D  +L  E   +G+V++   Y +L+
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLI 415



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 208/427 (48%), Gaps = 25/427 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F  TL  ++T++H L      S+A DL H +        +   F +++   G    G V+
Sbjct: 46  FHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKP-----NVVTFTTLM--NGLCREGRVV 98

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +A+ ++      ++D +Q  ++    Y  I    C+      M   +  + L   +E L 
Sbjct: 99  EAVALLD---RMVEDGLQPNQI---TYGTIVDGMCK------MGDTVSALNLLRKMEELS 146

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +   P V +++ ++  L K+G+  DAQ +F E   +G+    V+++ +ING C +    E
Sbjct: 147 H-IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M    + PDV T+S LIN L KE  L+ A+ LL EM   G+ PN V   TL+D
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 243 GHCKNGRIDMAGDMKEA--RKIVDEMCT---NGLNPDKITYTILLDGFCKEGDLESALDI 297
           G C +G++  A +M +A  + ++D   T   NG+ PD  TY IL+ G   EG    A ++
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +EM  RGI  D V ++++I+G C+  ++ EA +M   M      P+  T+  +I  +CK
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G    G  L  EM   G +    TY  L+ G  K G +  +  +   M+  GV PD IT
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445

Query: 418 YNILLEG 424
              +L G
Sbjct: 446 IRNMLTG 452



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 141/272 (51%), Gaps = 19/272 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L    SP V  F+ L++ L KEG +  AQ +  E    G+    V+ NTL++G C + 
Sbjct: 212 EMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSG 271

Query: 179 NLDEGFRLKSVMEGS-----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            L +   +   M+ S           G+ PDV TY+ LI+GL  E +  +AE L  EM  
Sbjct: 272 KLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 331

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+ P+ V ++++I+G CK  R+D      EA ++ D M +   +P+ +T+  L+ G+CK
Sbjct: 332 RGIVPDTVTYSSMINGLCKQSRLD------EATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++  L++  EM +RGI  + + +  LI GF + G +  +  + +EM+  G+ PD  T
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445

Query: 348 YTMVIDCFCKNGDTKTGFRLLKE--MRSDGHL 377
              ++       + K    +L+E  M  D HL
Sbjct: 446 IRNMLTGLWSKEELKRALAMLEELQMSMDHHL 477


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 184/336 (54%), Gaps = 14/336 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+  ++N  +H LCK GK+ +A  V             V+FNTLI G CKA  LDE 
Sbjct: 49  GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   ME SG   ++ TY+ LINGL    R  +A L++  M     TP+   +  +I G
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHG 165

Query: 244 HCKNGRIDMA-GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
            CK+G ID A G ++E ++        G +PD  TY+IL++G CK  +L  A ++ +EMI
Sbjct: 166 FCKSGEIDRAYGFLEEMKQ------RAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 303 -KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            ++      VAF  L+ G+C+   +  A  +L  ML+ G  PD  TY+ +ID  C+ GD 
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
             GF LL++M S G  P V TY  L+ GLCK G++  A  L+  ML+ G  P+ +TY+++
Sbjct: 280 DKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLV 339

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            +G CK    +  + L +   +KG ++D   + +L+
Sbjct: 340 FDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 11/303 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P V  FN L+  LCK G++ +AQ V DE  + G  A  V++NTLING   A    
Sbjct: 82  DGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSG 141

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTL 240
           E      VM+G    PD  TY+A+I+G CK   +D A   L EM +R G +P+   ++ L
Sbjct: 142 EAVL---VMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSIL 198

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           I+G CK      + ++++A +++ EM          + +  L+DG+CK  DL+ A ++  
Sbjct: 199 INGLCK------SSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLS 252

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M++ G   D V ++ +I G CR G V +   +L +M+  G KPD  TYT+++   CK G
Sbjct: 253 SMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAG 312

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                 RL+K M  DG  P   TY+ + +GLCK  +L  AN LL ++ D G + D + + 
Sbjct: 313 KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFE 372

Query: 420 ILL 422
            LL
Sbjct: 373 ALL 375



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEAERM 332
           D  TY +L+   C  G+L++A+D+ +EM ++ G+      +   +   C+ GKV EA  +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           ++ M     KPD  T+  +I   CK G      ++L EM   G    + TYN L+NGL  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYA 448
            G+   A +++  M      PD  TYN ++ G CK G  +      ++++   G   D  
Sbjct: 137 AGRSGEAVLVMQGMT---TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 449 CYTSLVS---KSSKYRQ 462
            Y+ L++   KSS  R+
Sbjct: 194 TYSILINGLCKSSNLRK 210



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 64/122 (52%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L++G +P V  ++ ++  LC+ G +     + ++   RG     V++  L+ G CKA  
Sbjct: 254 MLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGK 313

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E  RL   M   G  P+  TYS + +GLCK ++LD A  LL  + ++G   + V F  
Sbjct: 314 MVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEA 373

Query: 240 LI 241
           L+
Sbjct: 374 LL 375



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 20/199 (10%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YS +++ L       +A +LL  ++ +K   +S   F ++++                 Y
Sbjct: 195 YSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDG----------------Y 238

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL--EILDYGYSP 127
                LD A +    + +H           +ID + R     V  GF L  +++  G  P
Sbjct: 239 CKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCG--DVDKGFALLEKMVSRGCKP 296

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            V  + VL+  LCK GK+ +A  +     + G    AV+++ + +G CK   LD    L 
Sbjct: 297 DVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLL 356

Query: 188 SVMEGSGMRPDVYTYSALI 206
           + +   G   DV  + AL+
Sbjct: 357 TSIRDKGRITDVVAFEALL 375


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 187/354 (52%), Gaps = 13/354 (3%)

Query: 112 VTLGF--YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +TL F  +  IL  G+ P+    N L+  LC  G+IK A    D+   +G     VS+ T
Sbjct: 108 ITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGT 167

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK        RL   +EG  ++PDV  Y+ +IN LCK   L DA  +  EM  +G
Sbjct: 168 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 227

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++P+ V +TTLI G C      + G +KEA  +++EM    +NP+  T+ IL+D   KEG
Sbjct: 228 ISPDVVTYTTLIHGFC------IMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEG 281

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A  +   M+K  I+ D   + +LI G+    +V  A+ +   M + G+ PD   YT
Sbjct: 282 KMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYT 341

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I+  CK         L +EM+    +P + TYN+L++GLCK+  L+ A  L   M + 
Sbjct: 342 NMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQ 401

Query: 410 GVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           G+ PD  +Y ILL+G CK G  ED    F +L + KG   +   YT L+++  K
Sbjct: 402 GIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLA-KGYHLNVHAYTVLINRLCK 454



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 195/381 (51%), Gaps = 7/381 (1%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           S+FA+IL+ RG H   + L+ L+      G +  A+     L    F++       LI+ 
Sbjct: 113 SVFANILK-RGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLING 171

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           + +T           ++  +   P V ++N +++ LCK   + DA  V+ E   +G+   
Sbjct: 172 LCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPD 231

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V++ TLI+G C   +L E F L + M+   + P+V T++ LI+ L KE ++ +A++LL 
Sbjct: 232 VVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLA 291

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
            M +  + P+   + +LIDG+       +  ++K A+ +   M   G+ PD   YT +++
Sbjct: 292 VMMKACIKPDVFTYNSLIDGYF------LVDEVKHAKYVFYSMAQRGVTPDVQCYTNMIN 345

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G CK   ++ A+ + +EM  + +  D V + +LI G C+   +  A  + + M + G++P
Sbjct: 346 GLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQP 405

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  +YT+++D  CK+G  +    + + + + G+   V  Y  L+N LCK G    A  L 
Sbjct: 406 DVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLK 465

Query: 404 DTMLDLGVVPDDITYNILLEG 424
             M D G +PD +T++I++  
Sbjct: 466 SKMEDKGCMPDAVTFDIIIRA 486



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 172/335 (51%), Gaps = 9/335 (2%)

Query: 83  RLLRK---HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
           RLLRK   H  +        +I+ + +  L       Y E++  G SP V  +  L+H  
Sbjct: 183 RLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGF 242

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           C  G +K+A  + +E   + ++    +FN LI+   K   + E   L +VM  + ++PDV
Sbjct: 243 CIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDV 302

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
           +TY++LI+G    + +  A+ + + M +RG+TP+   +T +I+G CK   +D      EA
Sbjct: 303 FTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVD------EA 356

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
             + +EM    + PD +TY  L+DG CK   LE A+ + K M ++GI+ D  ++T L+ G
Sbjct: 357 MSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDG 416

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C+ G++ +A+ + + +L  G   +   YT++I+  CK G       L  +M   G +P 
Sbjct: 417 LCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPD 476

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             T++ ++  L +  +   A  +L  M+  G++ +
Sbjct: 477 AVTFDIIIRALFEKDENDKAEKILREMIARGLLKE 511



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           NG+ PD  T +IL++ FC +  +  A  +   ++KRG   + +    LI G C  G++ +
Sbjct: 86  NGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKK 145

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A     +++  G + D  +Y  +I+  CK G+TK   RLL+++      P V  YN ++N
Sbjct: 146 ALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIN 205

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL----- 443
            LCK+  L +A  +   M+  G+ PD +TY  L+ G C  G+ ++   L +E  L     
Sbjct: 206 SLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINP 265

Query: 444 -VSDYACYTSLVSKSSKYRQKR 464
            V  +      +SK  K ++ +
Sbjct: 266 NVCTFNILIDALSKEGKMKEAK 287



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 3/185 (1%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P    +  +L          + + + K+    GI  D    + LI+ FC    +  A  +
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
              +LK G  P+  T   +I   C  G+ K       ++ + G      +Y  L+NGLCK
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G+ K    LL  +    V PD + YN ++   CK+    D   + SE   KG+  D   
Sbjct: 175 TGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 234

Query: 450 YTSLV 454
           YT+L+
Sbjct: 235 YTTLI 239


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 188/346 (54%), Gaps = 9/346 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + +++  G  P VY +  +++ LCK G+   A  +  + G+ G     V+++TLI+
Sbjct: 180 ALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLID 239

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             CK + ++E   + S M+  G+ P V +Y++LI GLC  +R  +A  +L+EM    + P
Sbjct: 240 SLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMP 299

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V F+ LID  CK G +       EA+ ++  M   G+ P+ ITY  L+ G+  + ++ 
Sbjct: 300 DIVTFSLLIDIFCKEGNV------LEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVV 353

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +   MI RG + D  +++ LI+G+C   ++ EA+++  EM+  GL P+  +YT +I
Sbjct: 354 EARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLI 413

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             FC+ G  +    L K+M ++G+LP + TY+ L+ G CK G L  A  L   M    + 
Sbjct: 414 HAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLK 473

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           P+ + Y IL++  CK GN     KL SE    GL  D   YT++++
Sbjct: 474 PNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIIN 519



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+      P +  F++L+   CKEG + +AQ V     + G+    +++N+L++G+    
Sbjct: 291 EMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQM 350

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E  +L  VM   G +PDV++YS LING C   R+D+A+ L +EM  +GLTPN V +T
Sbjct: 351 EVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYT 410

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI   C+ G+      ++EAR++  +M TNG  PD  TY++LL+GFCK+G L  A  + 
Sbjct: 411 TLIHAFCQLGK------LREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLF 464

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M    ++ + V +T LI   C+ G +  A ++  E+   GL+PD   YT +I+  CK 
Sbjct: 465 RAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKE 524

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           G         ++M  DG  P   +YN ++ G  +H     A  L+  M D G V D+ T
Sbjct: 525 GLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 172/332 (51%), Gaps = 10/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFD-EFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           P +  FN L+  + +  +  DA +    +    GL     + N LIN  C  +++D GF 
Sbjct: 88  PCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFS 147

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + + +   G++P + T++ LINGLCK      A  L  +M  RG  P+   +TT+I+G C
Sbjct: 148 VLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC 207

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K       G+   A  ++ +M   G  PD +TY+ L+D  CK+  +  ALDI   M  +G
Sbjct: 208 K------MGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKG 261

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I    V++T+LI G C   +  EA  ML EM  + + PD  T++++ID FCK G+     
Sbjct: 262 ISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQ 321

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +LK M   G  P V TYN+LM+G     ++  A  L D M+  G  PD  +Y+IL+ G+
Sbjct: 322 GVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGY 381

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           C     ++  +L +E   +GL  +   YT+L+
Sbjct: 382 CMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLI 413



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 147/281 (52%), Gaps = 10/281 (3%)

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVI 236
           +N+D+     + M      P +  ++ L++ + +  +  DA + L +  E  GL+PN   
Sbjct: 69  RNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCT 128

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
              LI+  C    +D+         ++ ++   GL P  IT+T L++G CK G+   AL+
Sbjct: 129 LNILINCFCLMQHVDLG------FSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALE 182

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +M+ RG + D   +T +I+G C+ G+   A  ++++M +VG +PD  TY+ +ID  C
Sbjct: 183 LFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLC 242

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K+        +   M++ G  P V +Y +L+ GLC   + K A+ +L+ M  L ++PD +
Sbjct: 243 KDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIV 302

Query: 417 TYNILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
           T+++L++  CK GN    +   K  +E G+  +   Y SL+
Sbjct: 303 TFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLM 343


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 188/341 (55%), Gaps = 23/341 (6%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +Y FN+L+   C   K+  A   F +  K G H T V+FNTL++G C    + E   L  
Sbjct: 15  IYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFH 74

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M     +P+V T++ L+NGLC+E R+ +A  LL  M E GL PN + + T++DG CK G
Sbjct: 75  QM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 130

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
             D    +   RK+ +    + + PD + Y+ ++DG  K+G    A ++  EM  +GI  
Sbjct: 131 --DTVSALNLLRKMEE---LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V ++ +I+GFC  GK  EA+R+L+EML   + PD  T++ +I+   K GD  +   LL
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLL 245

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNA----NMLLDTMLDL-------GVVPDDIT 417
           +EM S G  P V T N L++GLC  G+LK+A      +  +M+D+       GV PD  T
Sbjct: 246 QEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQT 305

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           YNIL+ G    G   + ++L  E   +G+V D   Y+S+++
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 188/343 (54%), Gaps = 21/343 (6%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  F  LM+ LC+EG++ +A  + D   + GL    +++ T+++G CK  +      L
Sbjct: 79  PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138

Query: 187 KSVMEG-SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              ME  S ++PDV  YSA+I+GL K+ R  DA+ L  EM ++G+ P+ V ++ +I+G C
Sbjct: 139 LRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC 198

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            +G+        EA++++ EM    ++PD +T++ L++   KEGDL SA D+ +EMI  G
Sbjct: 199 SSGK------WSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSG 252

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKV-----------GLKPDDATYTMVIDC 354
           +  + V    L+ G C  GK+ +A  M + M K            G++PD  TY ++I  
Sbjct: 253 VCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG 312

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
               G       L +EM   G +P   TY++++NGLCK  +L  A  + D+M      P+
Sbjct: 313 LINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            +T+N L+ G+CK G  +D  +L  E   +G+V++   Y +L+
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLI 415



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 208/427 (48%), Gaps = 25/427 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F  TL  ++T++H L      S+A DL H +        +   F +++   G    G V+
Sbjct: 46  FHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKP-----NVVTFTTLM--NGLCREGRVV 98

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +A+ ++      ++D +Q  ++    Y  I    C+      M   +  + L   +E L 
Sbjct: 99  EAVALLD---RMVEDGLQPNQI---TYGTIVDGMCK------MGDTVSALNLLRKMEELS 146

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +   P V +++ ++  L K+G+  DAQ +F E   +G+    V+++ +ING C +    E
Sbjct: 147 H-IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M    + PDV T+S LIN L KE  L+ A+ LL EM   G+ PN V   TL+D
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 243 GHCKNGRIDMAGDMKEA--RKIVDEMCT---NGLNPDKITYTILLDGFCKEGDLESALDI 297
           G C +G++  A +M +A  + ++D   T   NG+ PD  TY IL+ G   EG    A ++
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +EM  RGI  D V ++++I+G C+  ++ EA +M   M      P+  T+  +I  +CK
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G    G  L  EM   G +    TY  L+ G  K G +  +  +   M+  GV PD IT
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445

Query: 418 YNILLEG 424
              +L G
Sbjct: 446 IRNMLTG 452



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 141/272 (51%), Gaps = 19/272 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L    SP V  F+ L++ L KEG +  AQ +  E    G+    V+ NTL++G C + 
Sbjct: 212 EMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSG 271

Query: 179 NLDEGFRLKSVMEGS-----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            L +   +   M+ S           G+ PDV TY+ LI+GL  E +  +AE L  EM  
Sbjct: 272 KLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 331

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+ P+ V ++++I+G CK  R+D      EA ++ D M +   +P+ +T+  L+ G+CK
Sbjct: 332 RGIVPDTVTYSSMINGLCKQSRLD------EATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++  L++  EM +RGI  + + +  LI GF + G +  +  + +EM+  G+ PD  T
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445

Query: 348 YTMVIDCFCKNGDTKTGFRLLKE--MRSDGHL 377
              ++       + K    +L+E  M  D HL
Sbjct: 446 IRNMLTGLWSKEELKKALAMLEELQMSMDHHL 477


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 194/359 (54%), Gaps = 9/359 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +       +  + +++  G  P VY +  +++ LCK G+   A  +  +  + G
Sbjct: 174 LINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAG 233

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V+++T+I+ H K + ++E   + S M+  G+ PD++TY++LI GLC  ++  +A 
Sbjct: 234 CQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEAS 293

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL+EM    + P+ V F  L+D  CK G++       EA+ ++  M   G+ PD +TY+
Sbjct: 294 ALLNEMRSLNIMPDIVTFNVLVDTICKEGKVS------EAQGVLKTMTEMGVEPDVVTYS 347

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G+    ++  A  +   MI +G + D  ++  LI+G+C+  ++ EA+++  EM+  
Sbjct: 348 SLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQ 407

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL P++ +Y  +I   C+ G  +    L K M ++G+LP + TY+ L++G CK G    A
Sbjct: 408 GLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKA 467

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
             L   M      P+ + YNIL++  CK GN  D  KL SE   KGL  +   YT++++
Sbjct: 468 FRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIIN 526



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 146/291 (50%), Gaps = 41/291 (14%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  FNVL+  +CKEGK+ +AQ V     + G+    V++++L+ G+     + E  +L
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G +PDV++Y+ LING CK  R+D+A+ L +EM  +GLTPN+V + TLI G C+
Sbjct: 366 FDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQ 425

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD----------------------- 283
                  G ++EAR +   M TNG  P+  TY+ILLD                       
Sbjct: 426 ------LGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS 479

Query: 284 ------------GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
                         CK G+L  A  +  E+  +G++ +   +T +I+G C+ G + EA  
Sbjct: 480 KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALE 539

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
             R M + G  PD+ +Y ++I  F  + D     +L+ EMR  G +  V T
Sbjct: 540 AFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 157/354 (44%), Gaps = 45/354 (12%)

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-AKNLDEGFRLKSVMEGSGMRPD 198
           C    I DA   F+    R      + F  L++   K  +  D    L   ME +G+ P+
Sbjct: 73  CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPN 132

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           +YT S LIN      R+D A  +L ++ + GL P  V FTTLI+  CK       G   +
Sbjct: 133 IYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCK------VGKFAQ 186

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGD---------------------------- 290
           A ++ D+M   G  PD  TYT +++G CK G+                            
Sbjct: 187 AMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIID 246

Query: 291 -------LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
                  +  ALDI   M  +GI  D   + +LI G C   +  EA  +L EM  + + P
Sbjct: 247 SHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMP 306

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  T+ +++D  CK G       +LK M   G  P V TY++LM G     ++  A  L 
Sbjct: 307 DIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLF 366

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           D M+  G  PD  +YNIL+ G+CK    ++  +L +E   +GL  +   Y +L+
Sbjct: 367 DAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLI 420



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRK 87
           L+H +     +  + +LF + + T G +LP L   ++++  +   G+   A + FR ++ 
Sbjct: 419 LIHGLCQLGSLREARNLFKN-MHTNG-NLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQS 476

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
            Y +        LID M ++         + E+   G  P+  ++  +++ LCKEG + +
Sbjct: 477 TYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDE 536

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
           A   F    + G     +S+N +I G    K+     +L   M   G   DV T
Sbjct: 537 ALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 199/374 (53%), Gaps = 16/374 (4%)

Query: 91  RIPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           R+ A GC+        +++RM ++      L    ++      P V  + +++  LCK+G
Sbjct: 220 RMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDG 279

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++ DA   F E   +G+ A   ++N+LI   C     D+G +L   M    + P+V T+S
Sbjct: 280 RLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFS 339

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           ALI+ L KE +L +A+ L +EM  RG+ PN + + +LI G C + R+D      EA +++
Sbjct: 340 ALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLD------EANQMM 393

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M + G +PD  TY IL++GFCK   ++  + + ++M  RG+  D V ++ LI GFC+ 
Sbjct: 394 DLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQS 453

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            K++ A+++ +EM+  G+ P   TY +++D  C NG+ +    +L +M        +  Y
Sbjct: 454 RKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIY 513

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           N +++G+C   ++ +A  L  ++   GV  D  +YNI+L G CK  +  + D L     E
Sbjct: 514 NIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKE 573

Query: 441 KGLVSDYACYTSLV 454
            G   D   Y +L+
Sbjct: 574 DGYEPDGCTYNTLI 587



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 184/395 (46%), Gaps = 51/395 (12%)

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +  DL  L+  I CF   RK  F   A G                      +I   GY P
Sbjct: 121 IAYDLYTLNIMINCFCRRRKLGFAFSAMG----------------------KIFKLGYEP 158

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +   FN L++ LC EG++ +A  + D           ++ NT++NG C    + E   L 
Sbjct: 159 NTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLI 218

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           + M  +G +P+ +TY  ++N +CK      A  LL +M  R + P+ V +T +ID  CK+
Sbjct: 219 ARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKD 278

Query: 248 GRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
           GR+D A                             G   +  +++ +M T  + P+ +T+
Sbjct: 279 GRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTF 338

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           + L+D   KEG L  A D+  EMI RGIE + + + +LI G C   ++ EA +M+  M+ 
Sbjct: 339 SALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVS 398

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G  PD  TY ++I+ FCK      G RL ++M   G +    TY+ L+ G C+  +L  
Sbjct: 399 KGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIV 458

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           A  +   M+  GV P  +TY ILL+G C +G  E+
Sbjct: 459 AKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEE 493



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 217/453 (47%), Gaps = 32/453 (7%)

Query: 29  LLHLIVSKKGMGSSASLFASILE----TRGTHLPGLVLDALMIVY--------VDLGFLD 76
           L+HL  ++ G   +A+ F S  E     +G    GL  D  M  Y        VD+   D
Sbjct: 16  LVHLRSTETGTLRNAAFFQSPYEFFFCVQG--FSGLTSDRKMSSYKERLRSGLVDIK-KD 72

Query: 77  DAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
           DA+  F+ +LR           R L   + RT    + L    ++   G +  +Y  N++
Sbjct: 73  DAVALFQSMLRSRPLPTVIDFNR-LFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIM 131

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++  C+  K+  A     +  K G     V+FNTL+NG C    + E   L   M  S  
Sbjct: 132 INCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQH 191

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PD+ T + ++NGLC ++R+ +A  L+  M   G  PN   +  +++  CK+G    A D
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 256 M---KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           +    E RKI          P  +TYTI++D  CK+G L+ AL    EM  +GI+ +   
Sbjct: 252 LLRKMEHRKI---------KPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFT 302

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           + +LI  FC  G+  +  ++LR+M+   + P+  T++ +ID   K G       L  EM 
Sbjct: 303 YNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMI 362

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           + G  P   TYN+L+ GLC   +L  AN ++D M+  G  PD  TYNIL+ G CK    +
Sbjct: 363 TRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVD 422

Query: 433 DFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
           D  +L    S +G+++D   Y++L+    + R+
Sbjct: 423 DGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRK 455



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 177/342 (51%), Gaps = 23/342 (6%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + +  +++++CK G    A  +  +   R +    V++  +I+  CK   LD+ 
Sbjct: 225 GCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDA 284

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
               S ME  G++ +V+TY++LI   C   R DD   LL +M  R +TPN V F+ LID 
Sbjct: 285 LSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDS 344

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA+ + +EM T G+ P+ ITY  L+ G C +  L+ A  +   M+ 
Sbjct: 345 LVKEGK------LTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVS 398

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G + D   +  LI+GFC+  +V +  R+ R+M   G+  D  TY+ +I  FC++     
Sbjct: 399 KGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIV 458

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM------LDLGVVPDDIT 417
             ++ +EM S G  P + TY  L++GLC +G+L+ A  +LD M      LD+G+      
Sbjct: 459 AKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGI------ 512

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           YNI++ G C     +D    F  L S KG+  D   Y  ++S
Sbjct: 513 YNIIIHGMCNANKVDDAWSLFCSLPS-KGVKRDIQSYNIMLS 553



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 186/388 (47%), Gaps = 41/388 (10%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G    A  F S +ET+G        ++L+  +   G  DD  Q  R            
Sbjct: 277 KDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLR------------ 324

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
                                  +++    +P+V  F+ L+  L KEGK+ +A+ +++E 
Sbjct: 325 -----------------------DMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEM 361

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             RG+    +++N+LI G C  K LDE  ++  +M   G  PD++TY+ LING CK  ++
Sbjct: 362 ITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQV 421

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           DD   L  +M  RG+  + V ++TLI G C++ ++ +A      +K+  EM + G++P  
Sbjct: 422 DDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVA------KKVFQEMVSQGVHPGI 475

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +TY ILLDG C  G+LE AL I  +M K  +ELD   +  +I G C   KV +A  +   
Sbjct: 476 MTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCS 535

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +   G+K D  +Y +++   CK         L ++M+ DG+ P   TYN L+    +   
Sbjct: 536 LPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGND 595

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLE 423
           +  +  L++ M   G   D  T  I+++
Sbjct: 596 ITTSVQLIEEMKRCGFSSDASTVKIVMD 623



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 129/287 (44%), Gaps = 24/287 (8%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+++++ L   K   +A  ++ L+VSK   G    ++   +   G              
Sbjct: 372 TYNSLIYGLCNDKRLDEANQMMDLMVSK---GCDPDIWTYNILING-------------- 414

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           +     +DD ++ FR +              LI    ++    V    + E++  G  P 
Sbjct: 415 FCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPG 474

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  + +L+  LC  G++++A  + D+  K  +      +N +I+G C A  +D+ + L  
Sbjct: 475 IMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFC 534

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +   G++ D+ +Y+ +++GLCK + L +A+ L  +M E G  P+   + TLI  H +  
Sbjct: 535 SLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLR-- 592

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
                 D+  + ++++EM   G + D  T  I++D     G+L+ + 
Sbjct: 593 ----GNDITTSVQLIEEMKRCGFSSDASTVKIVMD-MLSSGELDKSF 634


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 206/411 (50%), Gaps = 7/411 (1%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLD 63
           LTL  +S ++H L        A+ +L  +++ + +     LF ++L + R       V D
Sbjct: 74  LTLETHSIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFD 133

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           +L   Y  +    +A   F  ++ + F      C   +  ++  +   + L FY E+   
Sbjct: 134 SLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRC 193

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
             SP+ Y FN+++  LCK GK++ A  V  E    G+    VS+NTLI GHC    L   
Sbjct: 194 RISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIA 253

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +LK++M  +G+ P+V T+++LI+G CKE +L +A     EM    +TPN V + TLI+G
Sbjct: 254 TKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLING 313

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + + G  +MAG      K+ +EM  NG+  D +TY  L+ G CKEG  + A  + KE+ K
Sbjct: 314 YGQVGNSNMAG------KVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDK 367

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             +  +   ++ALISG C       A ++ + M++ G  P++ T+ M+   F KN D + 
Sbjct: 368 ENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEG 427

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            F +L +M +        T   + +GLC+ G+   A  L   M    ++P+
Sbjct: 428 AFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 193/403 (47%), Gaps = 28/403 (6%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           +LH++  K    S+ S+  ++L +R   LPG + D L+  Y      D + + F  L K 
Sbjct: 82  ILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSY---RMCDSSPRVFDSLFKT 138

Query: 89  YFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           Y  +   R    +  RM                 DYG+ P+V   N  +  L    ++  
Sbjct: 139 YAHMNKFRNATDVFSRMK----------------DYGFLPTVESCNAYLSSLLDFHRVDI 182

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A   + E  +  +   + +FN +++  CK+  L++   +   ME  G+ P+V +Y+ LI 
Sbjct: 183 ALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIA 242

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G C +  L  A  L + M + GL PN V F +LI G CK G+      + EA +   EM 
Sbjct: 243 GHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGK------LHEANRFFSEMK 296

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
              + P+ +TY  L++G+ + G+   A  + +EM++ G++ D + + ALI G C+ GK  
Sbjct: 297 VMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTK 356

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A  +++E+ K  L P+ +TY+ +I   C   ++   F+L K M   G  P  +T+  L 
Sbjct: 357 KAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLT 416

Query: 388 NGLCKHGQLKNA-NMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +   K+   + A N+L+D M    +  D  T   + +G C+ G
Sbjct: 417 SAFVKNEDFEGAFNVLMD-MFARSMASDSNTLLEIYDGLCQCG 458



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 158/318 (49%), Gaps = 24/318 (7%)

Query: 133 NVLMHKLCKEGKIKDAQMV----------------FDE--FGKRGLHATAVSFNTLINGH 174
           ++++H L K+ K K AQ +                FD   F  R   ++   F++L   +
Sbjct: 80  SIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTY 139

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
                      + S M+  G  P V + +A ++ L   +R+D A     EM    ++PN 
Sbjct: 140 AHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNS 199

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             F  ++   CK+G+++      +A +++ EM + G+ P+ ++Y  L+ G C +G L  A
Sbjct: 200 YTFNLVLSALCKSGKLE------KAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIA 253

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             ++  M K G+E + V F +LI GFC+ GK+ EA R   EM  + + P+  TY  +I+ 
Sbjct: 254 TKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLING 313

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           + + G++    ++ +EM  +G    + TYNAL+ GLCK G+ K A  L+  +    +VP+
Sbjct: 314 YGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPN 373

Query: 415 DITYNILLEGHCKHGNPE 432
             TY+ L+ G C   N +
Sbjct: 374 ASTYSALISGQCARKNSD 391



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           +L D  L  + MC+      D +F T                 + A  +   M   G  P
Sbjct: 113 KLFDTLLFSYRMCDSSPRVFDSLFKTYAH----------MNKFRNATDVFSRMKDYGFLP 162

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
              +    L        ++ AL   +EM +  I  ++  F  ++S  C+ GK+ +A  +L
Sbjct: 163 TVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVL 222

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           REM  VG+ P+  +Y  +I   C  G      +L   M  +G  P V T+N+L++G CK 
Sbjct: 223 REMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKE 282

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           G+L  AN     M  + V P+ +TYN L+ G+ + GN     K+  E    G+ +D   Y
Sbjct: 283 GKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTY 342

Query: 451 TSLV 454
            +L+
Sbjct: 343 NALI 346


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 187/339 (55%), Gaps = 9/339 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P+V     L+  LC +G+I  A    D+    G H   VS+ TLING CK  
Sbjct: 132 KILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVG 191

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L   ++G  ++P+V  Y+ +I+ +CK   +++A  L  EM  +G++P+ V + 
Sbjct: 192 QTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYN 251

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G C      + G MK+A  + ++M    +NP+  T+ IL+DGFCKE  L+ A ++ 
Sbjct: 252 ALISGFC------IVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVL 305

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+K+GI+ D   + +L+  +C   +V +A+ +   + + G+ P+  +Y+++I  FCK 
Sbjct: 306 AMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKI 365

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L KEM  +  +P V TYN+L++GLCK G++  A  L+D M D GV  D ITY
Sbjct: 366 KKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITY 425

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           N +L+  CK+   +    L +   ++G+  D   YT+LV
Sbjct: 426 NSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLV 464



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 195/386 (50%), Gaps = 6/386 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   +   G HL  +    L+     +G    A+Q  R +     +     
Sbjct: 155 KGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVM 214

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID M +  L       Y E++  G SP V  +N L+   C  GK+KDA  +F++  
Sbjct: 215 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMI 274

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
              ++    +FN L++G CK + L E   + ++M   G++PDV+TY++L++  C    ++
Sbjct: 275 FENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVN 334

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ + + + +RG+ PN   ++ +I G CK  ++D      EA  +  EM  N + PD +
Sbjct: 335 KAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVD------EAMNLFKEMHCNNIIPDVV 388

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+DG CK G +  AL +  EM  RG+  D + + +++   C+  +V +A  +L +M
Sbjct: 389 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 448

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G++PD  TYT ++D  CKNG  +    + +++   G++  V  Y A++ G C HG  
Sbjct: 449 KDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLF 508

Query: 397 KNANMLLDTMLDLGVVPDDITYNILL 422
             +  LL  M + G +P+ +TY I++
Sbjct: 509 DESLDLLSKMEENGCIPNAVTYEIII 534



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 186/376 (49%), Gaps = 41/376 (10%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            V LGF+L  + YG          L++ LCK G+   A  +      + +    V +NT+
Sbjct: 168 VVALGFHLNKVSYG---------TLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTI 218

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+  CK K ++E F L S M   G+ PDV TY+ALI+G C   ++ DA  L ++M    +
Sbjct: 219 IDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENI 278

Query: 231 TPNDVIFTTLIDGHCKNGRID-----------------------------MAGDMKEARK 261
            PN   F  L+DG CK  R+                              +  ++ +A+ 
Sbjct: 279 NPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKH 338

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           I + +   G+NP+  +Y+I++ GFCK   ++ A+++ KEM    I  D V + +LI G C
Sbjct: 339 IFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLC 398

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + GK+  A +++ EM   G+  D  TY  ++D  CKN        LL +M+ +G  P + 
Sbjct: 399 KLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDIC 458

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG-NPEDFDKLQ-- 438
           TY  L++GLCK+G+L++A ++ + +L  G + D   Y  +++G C HG   E  D L   
Sbjct: 459 TYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKM 518

Query: 439 SEKGLVSDYACYTSLV 454
            E G + +   Y  ++
Sbjct: 519 EENGCIPNAVTYEIII 534



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 133/264 (50%), Gaps = 9/264 (3%)

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           +P ++ +  ++  L K N       L  +M   G+T + VI + LI+   + G+  +   
Sbjct: 69  KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPL--- 125

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
              +  ++ ++   G  P+ IT T L+ G C +G +  AL    +++  G  L+ V++  
Sbjct: 126 ---SFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGT 182

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI+G C+ G+   A ++LR +    ++P+   Y  +ID  CK       F L  EM S G
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 242

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH---GNPE 432
             P V TYNAL++G C  G++K+A  L + M+   + P+  T+NIL++G CK       +
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAK 302

Query: 433 DFDKLQSEKGLVSDYACYTSLVSK 456
           +   +  ++G+  D   Y SL+ +
Sbjct: 303 NVLAMMMKQGIKPDVFTYNSLMDR 326



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P +  +  L+  LCK G+++DA++VF++   +G       +  +I G C     D
Sbjct: 450 DEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFD 509

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           E   L S ME +G  P+  TY  +I  L  ++  D AE LL EM  RGL
Sbjct: 510 ESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 191/336 (56%), Gaps = 12/336 (3%)

Query: 124  GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
            G +P+++++N L+  LCK G I+ A+ +FD   ++GL   +V+++T+I+G+CK++N+ E 
Sbjct: 678  GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 737

Query: 184  FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            F L   M   G++P  + Y+AL++G CKE  ++ A  L  EM ++G     + F TLIDG
Sbjct: 738  FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT-LSFNTLIDG 796

Query: 244  HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            +CK+ +I      +EA ++  EM    + PD +TYT ++D  CK G +E A  + KEM +
Sbjct: 797  YCKSCKI------QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 850

Query: 304  RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            R + +D V +T+L+ G+ + G+  E   +  +M+  G+KPD+ TY +VI   CK  +   
Sbjct: 851  RNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVE 910

Query: 364  GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             F+L  E+   G L     ++ L+  LCK   L  A+ LLD M +LG+ P     N L+ 
Sbjct: 911  AFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVR 970

Query: 424  GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
               + G  ++    F+ ++S  GLV D      LV+
Sbjct: 971  SFHEAGKMDEATRVFEGVKS-LGLVPDTTTLIDLVN 1005



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 193/406 (47%), Gaps = 68/406 (16%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V V+++L+     EG+I++A+ + D     G+      +N +I+   KA  ++E 
Sbjct: 468 GLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEA 527

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 ++G G++PD  T+ A I G  K  ++ +A     EM + GL PN+ ++T LI+G
Sbjct: 528 STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLING 587

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           H K G +  A                             G ++EA K+  E+   GL PD
Sbjct: 588 HFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 647

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+ L+ GFCK+G++E A ++  EM  +GI  +   + AL+ G C+ G +  A ++  
Sbjct: 648 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 707

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M + GL+PD  TY+ +ID +CK+ +    F L  EM S G  P    YNAL++G CK G
Sbjct: 708 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 767

Query: 395 QLKNANMLLDTMLDLG----------------------------------VVPDDITYNI 420
            ++ A  L   ML  G                                  ++PD +TY  
Sbjct: 768 DMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 827

Query: 421 LLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           +++ HCK G  E+    F ++Q E+ L+ D   YTSL+   +K  Q
Sbjct: 828 VIDWHCKAGKMEEANLLFKEMQ-ERNLIVDTVTYTSLMYGYNKLGQ 872



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 219/450 (48%), Gaps = 36/450 (8%)

Query: 41  SSASLFASIL---ETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           SS+S+  S+L      G   P +V D L+  Y  +G LD+A   F + +     I    C
Sbjct: 138 SSSSILDSVLFWFRNYGGSSP-VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRC 196

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             L+  +++  +  +    Y  +LD      VY +  L+  LCK G ++ A+ V  E  +
Sbjct: 197 NSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           +GL+     ++ +I G C+  ++DE   LK  M   G+ P+ YTY+ +  GLC+  R+++
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNE 316

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------ 253
           A+L   EM + GL P+    + LIDG  + G ID                          
Sbjct: 317 AKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIH 376

Query: 254 -----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                G M++A +I+  M T G  P+  T+ +L++G+C+E ++  AL++  EM KR +  
Sbjct: 377 GLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVP 436

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V++ A+I+G C    +  A ++L +M   GLKP+   Y+++I  +   G  +   RLL
Sbjct: 437 SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLL 496

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G  P +  YNA+++ L K G+++ A+  L  +   G+ PD +T+   + G+ K 
Sbjct: 497 DGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKT 556

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G   +  K   E    GL+ +   YT L++
Sbjct: 557 GKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 586



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 207/453 (45%), Gaps = 79/453 (17%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +++A   F  ++K   +     C  LID  MR       L     ++  G   ++  +NV
Sbjct: 314 MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 373

Query: 135 LMHKLCKEGKIKDAQMVF-----------------------------------DEFGKRG 159
           L+H LCK GK++ A  +                                    DE  KR 
Sbjct: 374 LIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 433

Query: 160 LHATAVSFNTLINGHCKAKNL-----------------------------------DEGF 184
           L  +AVS+  +ING C  K+L                                   +E  
Sbjct: 434 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEAR 493

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           RL   M  SG+ PD++ Y+A+I+ L K  ++++A   L E+  RGL P+ V F   I G+
Sbjct: 494 RLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGY 553

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+      M EA K  DEM  +GL P+   YT+L++G  K G+L  AL I + +   
Sbjct: 554 SKTGK------MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHAL 607

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  D    +A I G  + G+V EA ++  E+ + GL PD  TY+ +I  FCK G+ +  
Sbjct: 608 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKA 667

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F L  EM   G  P +  YNAL++GLCK G ++ A  L D M + G+ PD +TY+ +++G
Sbjct: 668 FELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 727

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +CK  N  +   L  E   KG+      Y +LV
Sbjct: 728 YCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 760



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 14/311 (4%)

Query: 86   RKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
            RK +  +P +G          +ID   ++         + E+   G  P  +V+N L+H 
Sbjct: 703  RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 762

Query: 139  LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
             CKEG ++ A  +F E  ++G  AT +SFNTLI+G+CK+  + E  +L   M    + PD
Sbjct: 763  CCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD 821

Query: 199  VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
              TY+ +I+  CK  ++++A LL  EM ER L  + V +T+L+ G+ K       G   E
Sbjct: 822  HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNK------LGQSSE 875

Query: 259  ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
               + ++M   G+ PD++TY +++   CKE +L  A  +R E++ +G+         LI+
Sbjct: 876  VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLIT 935

Query: 319  GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
              C+   + EA ++L EM ++GLKP  A    ++  F + G      R+ + ++S G +P
Sbjct: 936  ALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVP 995

Query: 379  AVETYNALMNG 389
               T   L+NG
Sbjct: 996  DTTTLIDLVNG 1006


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 188/364 (51%), Gaps = 30/364 (8%)

Query: 97   CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
            C  ++  +    L    + ++ +++D G+ P++  F  L+  LCK+G IK A  + +E  
Sbjct: 856  CTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMV 915

Query: 157  KRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + G      +   LI+G CK    ++ FRL   ++     +P+V+TY+++I G CKE++L
Sbjct: 916  RNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKL 975

Query: 216  DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR-------IDMAGD------------- 255
            + AE+L   M E+GL PN   +TTLI+GHCK G        +++ GD             
Sbjct: 976  NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAA 1035

Query: 256  ---------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                       EA +++++  + GL  D +TYTIL+   CK+ D+  AL     M K G 
Sbjct: 1036 IDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGF 1095

Query: 307  ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            E D      LI+ FCR  K+ E+ER+ + ++ +GL P   TYT +I C+CK GD     +
Sbjct: 1096 EADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALK 1155

Query: 367  LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
                M+  G +P   TY +L++GLCK   +  A  L + M+D G+ P ++T   L   +C
Sbjct: 1156 YFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYC 1215

Query: 427  KHGN 430
            K  +
Sbjct: 1216 KRND 1219



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 170/334 (50%), Gaps = 7/334 (2%)

Query: 98   RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
            RC++            +G  +++ + G +PS    N ++    + G I+ A+ VFDE   
Sbjct: 752  RCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSV 811

Query: 158  RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
            RG+   + S+  ++ G  +   + E  R  + M   G  PD  T + ++  LC+   ++ 
Sbjct: 812  RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 871

Query: 218  AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
            A     +M + G  PN + FT+LIDG CK G I      K+A ++++EM  NG  P+  T
Sbjct: 872  AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSI------KQAFEMLEEMVRNGWKPNVYT 925

Query: 278  YTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREM 336
            +T L+DG CK G  E A  +  ++++      NV  +T++I G+C+  K+  AE +   M
Sbjct: 926  HTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRM 985

Query: 337  LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
             + GL P+  TYT +I+  CK G     + L+  M  +G +P + TYNA ++ LCK  + 
Sbjct: 986  KEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRA 1045

Query: 397  KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
              A  LL+     G+  D +TY IL++  CK  +
Sbjct: 1046 PEAYELLNKAFSCGLEADGVTYTILIQEQCKQND 1079



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 155/322 (48%), Gaps = 32/322 (9%)

Query: 125  YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            Y P+V+ +  ++   CKE K+  A+M+F    ++GL     ++ TLINGHCKA +    +
Sbjct: 955  YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAY 1014

Query: 185  RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
             L ++M   G  P++YTY+A I+ LCK++R  +A  LL++    GL  + V +T LI   
Sbjct: 1015 ELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQ 1074

Query: 245  CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
            CK   I+ A                               MKE+ ++   + + GL P K
Sbjct: 1075 CKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTK 1134

Query: 276  ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
             TYT ++  +CKEGD++ AL     M + G   D+  + +LISG C+   V EA ++   
Sbjct: 1135 ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEA 1194

Query: 336  MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
            M+  GL P + T   +   +CK  D+     LL+ +  D  L  + T   L+  LC   +
Sbjct: 1195 MIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPL--DKKL-WIRTVRTLVRKLCSEKK 1251

Query: 396  LKNANMLLDTMLDLGVVPDDIT 417
            +  A +    +L+     D +T
Sbjct: 1252 VGVAALFFQKLLEKDSSADRVT 1273



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G + EA  +V +M   GL P  IT   +L+   + G +E A ++  EM  RG+  D+ ++
Sbjct: 762 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 821

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G  R GK+ EA+R L  M++ G  PD+AT T+++   C+NG         ++M  
Sbjct: 822 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 881

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P +  + +L++GLCK G +K A  +L+ M+  G  P+  T+  L++G CK G  E 
Sbjct: 882 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEK 941

Query: 434 ----FDKLQSEKGLVSDYACYTSLV 454
               F KL        +   YTS++
Sbjct: 942 AFRLFLKLVRSDTYKPNVHTYTSMI 966



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 3/180 (1%)

Query: 75   LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
            ++ A+  F  + K  F    R    LI    R      +   +  ++  G  P+   +  
Sbjct: 1080 INQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTS 1139

Query: 135  LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
            ++   CKEG I  A   F    + G    + ++ +LI+G CK   +DE  +L   M   G
Sbjct: 1140 MISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRG 1199

Query: 195  MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            + P   T   L    CK N   +A +LL E  ++ L    V   TL+   C   ++ +A 
Sbjct: 1200 LSPPEVTRVTLAYEYCKRNDSANAMILL-EPLDKKLWIRTV--RTLVRKLCSEKKVGVAA 1256



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 351 VIDCFCKN----GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           V+ C  +N    G       ++ +M++ G  P+  T N ++    + G ++ A  + D M
Sbjct: 750 VMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEM 809

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYA---------CYTSLV 454
              GVVPD  +Y +++ G  + G  ++ D+  +   ++G + D A         C   LV
Sbjct: 810 SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLV 869

Query: 455 SKSSKYRQK 463
           +++  Y +K
Sbjct: 870 NRAIWYFRK 878


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 179/333 (53%), Gaps = 14/333 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T   + ++++ G +P V  FN L++ LC EG++ +A  + ++   +GLH   V++ T++N
Sbjct: 205 TGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 264

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK  +      L S ME + ++PDV  YSA+I+ LCK+    DA+ L  EM E+G+ P
Sbjct: 265 GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 324

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   +  +IDG C  GR        +A++++ +M    +NPD +T+  L+    KEG L 
Sbjct: 325 NVFTYNCMIDGFCSFGR------WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLF 378

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM+ R I  D V + ++I GFC+  +  +A+ M   M      PD  T+  +I
Sbjct: 379 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTII 434

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D +C+      G +LL+E+   G +    TYN L++G C+   L  A  L   M+  GV 
Sbjct: 435 DVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVC 494

Query: 413 PDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           PD IT NILL G C++   E+    F+ +Q  K
Sbjct: 495 PDTITCNILLYGFCENEKLEEALELFEVIQMSK 527



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 213/449 (47%), Gaps = 43/449 (9%)

Query: 25  QARDLLHLIVSKKGMGSSASLFASILE------TRGTHLPGLVLDALMIVYVDLGFLDDA 78
            +R L+H  V++KG  S  SL     E        G+H                  LDDA
Sbjct: 45  NSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHY--------------FKSLDDA 90

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           I  F  + +      A  C  +I   +R N P V +  Y ++       ++Y FN+L+  
Sbjct: 91  IDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKC 150

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM--EGS--- 193
            C   K+  +   F +  K G     V+FNTL++G C    + E   L   M   GS   
Sbjct: 151 FCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFD 210

Query: 194 -----GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
                G+ P V T++ LINGLC E R+ +A  L+++M  +GL  + V + T+++G CK  
Sbjct: 211 QMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCK-- 268

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                GD K A  ++ +M    + PD + Y+ ++D  CK+G    A  +  EM+++GI  
Sbjct: 269 ----MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 324

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   +  +I GFC  G+  +A+R+LR+M++  + PD  T+  +I    K G      +L 
Sbjct: 325 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 384

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM      P   TYN+++ G CKH +  +A      M DL   PD +T+N +++ +C+ 
Sbjct: 385 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH----MFDLMASPDVVTFNTIIDVYCRA 440

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
              ++  +L  E   +GLV++   Y +L+
Sbjct: 441 KRVDEGMQLLREISRRGLVANTTTYNTLI 469



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 172/341 (50%), Gaps = 10/341 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +IDR+ +    +     + E+L+ G +P+V+ +N ++   C  G+  DAQ +  +  +R 
Sbjct: 297 IIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE 356

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++   ++FN LI+   K   L E  +L   M    + PD  TY+++I G CK NR DDA+
Sbjct: 357 INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAK 416

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M     +P+ V F T+ID +C+  R+D      E  +++ E+   GL  +  TY 
Sbjct: 417 HMFDLMA----SPDVVTFNTIIDVYCRAKRVD------EGMQLLREISRRGLVANTTTYN 466

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC+  +L +A D+ +EMI  G+  D +    L+ GFC   K+ EA  +   +   
Sbjct: 467 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 526

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +  D   Y ++I   CK       + L   +   G  P V+TYN +++G C    + +A
Sbjct: 527 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 586

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N+L   M D G  PD+ TYN L+ G  K G  +   +L SE
Sbjct: 587 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE 627



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 158/303 (52%), Gaps = 10/303 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++   +P V  FN L+    KEGK+ +A+ + DE   R +    V++N++I G CK  
Sbjct: 351 DMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHN 410

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D+   +  +M      PDV T++ +I+  C+  R+D+   LL E+  RGL  N   + 
Sbjct: 411 RFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYN 466

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C+   ++ A D+ +      EM ++G+ PD IT  ILL GFC+   LE AL++ 
Sbjct: 467 TLIHGFCEVDNLNAAQDLFQ------EMISHGVCPDTITCNILLYGFCENEKLEEALELF 520

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + +    I+LD VA+  +I G C+G KV EA  +   +   G++PD  TY ++I  FC  
Sbjct: 521 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 580

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L  +M+ +GH P   TYN L+ G  K G++  +  L+  M   G   D  T 
Sbjct: 581 SAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI 640

Query: 419 NIL 421
            ++
Sbjct: 641 KMV 643



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 155/325 (47%), Gaps = 7/325 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   FD   +     TAV  N +I    +    D    L   ME   +  ++Y+++ 
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----GDMKEAR 260
           LI   C  ++L  +     ++ + G  P+ V F TL+ G C   RI  A    G M E  
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            + D+M   GL P  IT+  L++G C EG +  A  +  +M+ +G+ +D V +  +++G 
Sbjct: 207 SLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGM 266

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+ G    A  +L +M +  +KPD   Y+ +ID  CK+G       L  EM   G  P V
Sbjct: 267 CKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNV 326

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            TYN +++G C  G+  +A  LL  M++  + PD +T+N L+    K G   + +KL  E
Sbjct: 327 FTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDE 386

Query: 441 ---KGLVSDYACYTSLVSKSSKYRQ 462
              + +  D   Y S++    K+ +
Sbjct: 387 MLHRCIFPDTVTYNSMIYGFCKHNR 411


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 178/334 (53%), Gaps = 13/334 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  Y FN L+   C+  ++  A+ +FD+   RG     VS+ TLI G C+A  +DE 
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+    +PD++ Y+AL+ GLC   R ++  L+L  M E G  P+   +  ++D 
Sbjct: 65  VELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 120

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+  +       KEA +++ EM   GL P  +T T +++ +CKEG +  AL + + M  
Sbjct: 121 RCRERKA------KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKL 174

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG + +   + AL+ GFC  GKV +A  +L +M   G+ PD  TY ++I   C +G  ++
Sbjct: 175 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 234

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            FRLL+ M  DG +    TYNAL+N LCK G+   A  L D++   G+ P+ +T+N L+ 
Sbjct: 235 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 294

Query: 424 GHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           G CK G  +    F +     G   D   Y+S +
Sbjct: 295 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 328



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 170/338 (50%), Gaps = 10/338 (2%)

Query: 90  FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
           +R  A     LI    RTN   V    + ++   G++  V  +  L+  LC+ G+I +A 
Sbjct: 6   WRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAV 65

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            +F E  +  +H  A     L+ G C A+  +EG  +   M+  G RP    Y+A+++  
Sbjct: 66  ELFGEMDQPDMHMYA----ALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFR 121

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C+E +  +AE +L EM E+GL P  V  T +I+ +CK GR      M +A ++++ M   
Sbjct: 122 CRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR------MSDALRVLELMKLR 175

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  P+  TY  L+ GFC EG +  A+ +  +M   G+  D V +  LI G C  G +  A
Sbjct: 176 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 235

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            R+LR M   GL  D  TY  +I+  CK+G T     L   + + G  P   T+N+L+NG
Sbjct: 236 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 295

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           LCK G+   A   L+ M+  G  PD  TY+  +E  CK
Sbjct: 296 LCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 333



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 6/299 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V+ +N L+   C EGK+  A  + ++    G++  AV++N LI G C   +++  
Sbjct: 176 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 235

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +MEG G+  D YTY+ALIN LCK+ R D A  L   +  RG+ PN V F +LI+G
Sbjct: 236 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 295

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+G+ D+A       K +++M + G  PD  TY+  ++  CK    +  L    EM++
Sbjct: 296 LCKSGKADIAW------KFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ 349

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + ++   V +T +I    +        R   EM+  G  PD  TYT  +  +C  G    
Sbjct: 350 KDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNE 409

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +L EM  +G       YN LM+G    GQ  +A  +L  M  +  VP+  TY ILL
Sbjct: 410 AENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILL 468



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 166/346 (47%), Gaps = 41/346 (11%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G+ PS   +  ++   C+E K K+A+ +  E  ++GL    V+   +IN +CK   + 
Sbjct: 104 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 163

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  R+  +M+  G +P+V+TY+AL+ G C E ++  A  LL++M   G+ P+ V +  LI
Sbjct: 164 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 223

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C +G I+       A +++  M  +GL  D+ TY  L++  CK+G  + A  +   +
Sbjct: 224 RGQCIDGHIE------SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 277

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RGI+ + V F +LI+G C+ GK   A + L +M+  G  PD  TY+  I+  CK   +
Sbjct: 278 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 337

Query: 362 KTGF-----------------------RLLKE------------MRSDGHLPAVETYNAL 386
           + G                        +LLKE            M S G  P V TY   
Sbjct: 338 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 397

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           M   C  G+L  A  +L  M   GV  D + YN L++GH   G  +
Sbjct: 398 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTD 443



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 143/273 (52%), Gaps = 13/273 (4%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  SG RPD YT+++LI G C+ N++D A  L  +M  RG   + V + TLI+G C+ GR
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           ID      EA ++  EM      PD   Y  L+ G C     E  L + + M + G    
Sbjct: 61  ID------EAVELFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPS 110

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             A+ A++   CR  K  EAE ML+EM + GL P   T T VI+ +CK G      R+L+
Sbjct: 111 TRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLE 170

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M+  G  P V TYNAL+ G C  G++  A  LL+ M   GV PD +TYN+L+ G C  G
Sbjct: 171 LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDG 230

Query: 430 NPED---FDKLQSEKGLVSDYACYTSLVSKSSK 459
           + E      +L    GL++D   Y +L++   K
Sbjct: 231 HIESAFRLLRLMEGDGLIADQYTYNALINALCK 263



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 23/408 (5%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           SA     ++E  G        +AL+      G  D A   F  L     +  A     LI
Sbjct: 234 SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 293

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           + + ++    +   F  +++  G +P  Y ++  +  LCK    ++      E  ++ + 
Sbjct: 294 NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 353

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            + V++  +I+   K +N     R    M  SG  PDV TY+  +   C E RL++AE +
Sbjct: 354 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 413

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L EM + G+T + + + TL+DGH   G+ D       A  I+ +M +    P++ TY IL
Sbjct: 414 LMEMSKNGVTVDTMAYNTLMDGHASIGQTD------HAVSILKQMTSVASVPNQFTYFIL 467

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNV-----------------AFTALISGFCRGG 324
           L    +   +E  L +    + + IEL +V                  +++++ GF   G
Sbjct: 468 LRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDG 527

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +  EA  ++  M +  +  ++  YT ++ CFCK+      + L+  M   G +P + +Y 
Sbjct: 528 RTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQ 587

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            L++GL   GQ   A  +          PD+I + ++++G  K G+ +
Sbjct: 588 HLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 635



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 122/291 (41%), Gaps = 23/291 (7%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E++  G +P V  +   M   C EG++ +A+ V  E  K G+    +++NTL++GH  
Sbjct: 379 WGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS 438

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALIN-----------------GLCKENRLDDAE 219
               D    +   M      P+ +TY  L+                  G+ K   L D  
Sbjct: 439 IGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVF 498

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M +    PN   ++++++G  ++GR +      EA  +V  M  + ++ ++  YT
Sbjct: 499 GLFDVMKKNEFLPNSGTYSSILEGFSEDGRTE------EATSLVSLMKEDSISLNEDIYT 552

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+  FCK      A  +   MI+ G     +++  L+SG    G+  +A+ +       
Sbjct: 553 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWK 612

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
              PD+  + ++ID   K G +     ++  +      P+ +TY  L   L
Sbjct: 613 DYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEEL 663


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 189/350 (54%), Gaps = 6/350 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D A++    + K+      R    ++     +  P   +GF  ++   G  P V  +N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           LM  LCK G+  +A+ +FD   KRGL     ++ TL+ G+     L E   L  +M  +G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + P+ Y +S LI    K+ ++D A L+  +M ++GL P+ V + T+I   CK+GR++ A 
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA- 428

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            M+   +++DE     L+P  I Y  L+   C     + A ++  EM+ RGI LD + F 
Sbjct: 429 -MRYFEQMIDER----LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ++I   C+ G+V+E+E++   M+++G+KPD  TY+ +ID +C  G      +LL  M S 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           G  P   TYN L+NG CK  ++++A +L   M   GV PD ITYNI+L+G
Sbjct: 544 GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  +++   KEG +  A   + E   RG+    V+++++I   CKA+ +D+   +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  +G+ P+  TY+++++G C   +  +A   L +M   G+ P+ V + +L+D  CK
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NGR        EARK+ D M   GL P+  TY  LL G+  +G L     +   M++ GI
Sbjct: 317 NGRC------TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             ++  F+ LI  + + GKV +A  +  +M + GL PD  TY  VI   CK+G  +   R
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             ++M  +   P    YN+L++ LC   +   A  L+  MLD G+  D I +N +++ HC
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 427 KHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           K G   + +K   L    G+  D   Y++L+
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 175/369 (47%), Gaps = 34/369 (9%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G Y E+LD G  P+V  ++ ++  LCK   +  A  V     K G+     ++N++++G+
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C +    E       M   G+ PDV TY++L++ LCK  R  +A  +   M +RGL P  
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 235 VIFTTLIDGHCKNGR-IDM----------------------------AGDMKEARKIVDE 265
             + TL+ G+   G  ++M                             G + +A  +  +
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GLNPD +TY  ++   CK G +E A+   ++MI   +   N+ + +LI   C   K
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
             +A+ ++ EML  G+  D   +  +ID  CK G      +L   M   G  P + TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           L++G C  G++  A  LL +M+ +G+ PD +TYN L+ G+CK    ED    F +++S  
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS- 578

Query: 442 GLVSDYACY 450
           G+  D   Y
Sbjct: 579 GVSPDIITY 587



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 171/331 (51%), Gaps = 9/331 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ YVF++L+    K+GK+  A +VF +  ++GL+   V++ T+I   CK+  +++ 
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R    M    + P    Y++LI+ LC  ++ D A+ L+ EM +RG+  + + F ++ID 
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDS 488

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ PD ITY+ L+DG+C  G ++ A  +   M+ 
Sbjct: 489 HCKEGRV------IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS 542

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+C+  ++ +A  + REM   G+ PD  TY +++    +   T  
Sbjct: 543 VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAA 602

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+     A  +   +    +  +  T+NI++ 
Sbjct: 603 AKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 662

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
              K G     +D     S  GLV D   Y+
Sbjct: 663 ALLKVGRNDEAKDLFAALSANGLVPDVRTYS 693



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 13/317 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +     ++  LI   C
Sbjct: 44  ELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTYGILIGSCC 102

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
            A  LD GF     +   G R D   ++ L+ GLC + R  DA +++L  M + G  PN 
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLE 292
             +  L+ G C   R       +EA +++  M  +G +  PD ++YT +++GF KEGDL+
Sbjct: 163 FSYNILLKGLCDENR------SQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLD 216

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A     EM+ RGI  + V ++++I+  C+   + +A  +L  M+K G+ P+  TY  ++
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +C +G  K     LK+M SDG  P V TYN+LM+ LCK+G+   A  + D+M   G+ 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK 336

Query: 413 PDDITYNILLEGHCKHG 429
           P+  TY  LL+G+   G
Sbjct: 337 PEITTYGTLLQGYATKG 353



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 207/440 (47%), Gaps = 26/440 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           Y++++ +L  +   ++AR +   + +K+G+    + + ++L+                  
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V   L+  Y   G +D A+  F  +R+            +I  + ++   
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D   SP   V+N L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++PD+ TYS LI+G C   ++D+A  LL  M   G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + TLI+G+CK  R      M++A  +  EM ++G++PD ITY I+L G  +   
Sbjct: 546 KPDCVTYNTLINGYCKISR------MEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + + G +L+   +  ++ G C+     EA RM + +    L+ +  T+ +
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I    K G       L   + ++G +P V TY+ +   L + G L+  + L  +M + G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 411 VVPDDITYNILLEGHCKHGN 430
              +    N ++    + G+
Sbjct: 720 CTANSRMLNSIVRKLLQRGD 739



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 1/216 (0%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M  +  L AS++   G     +  + L+  Y  +  ++DA+  FR +             
Sbjct: 530 MDEATKLLASMVSV-GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++  + +T         Y+ I + G    +  +N+++H LCK     +A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            L     +FN +I    K    DE   L + +  +G+ PDV TYS +   L ++  L++ 
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEEL 708

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + L   M E G T N  +  +++    + G I  AG
Sbjct: 709 DDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAG 744



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATY 348
           E A  +  E+++RG           ++   R        R  R M + G   + P+  TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNR-MARAGADEVTPNLCTY 94

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTML 407
            ++I   C  G    GF  L  +   G       +  L+ GLC   +  +A +++L  M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 408 DLGVVPDDITYNILLEGHCKHGNPED 433
            LG +P+  +YNILL+G C     ++
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQE 180


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 184/331 (55%), Gaps = 11/331 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ + +++  LCK+G   +A  +F E    G+    V +++L++G C+   L E      
Sbjct: 146 VFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFK 205

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            MEG G+  DVYTY++LI+GL +     +    L+ M +RG +P+   FT LIDG CK G
Sbjct: 206 EMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEG 265

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       EA++I++ M   G  PD +TY  L++G C  G LE A  + + +  RGI+L
Sbjct: 266 KVG------EAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL 319

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +  ++  LI+G+C+  K+ EA R+  EM   GLKP   TY  +I   C++G  +T  +L 
Sbjct: 320 NVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLF 379

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM++ G    + TY  L++GLCK+G L+ A  L  ++      P+   ++ILL+G C+ 
Sbjct: 380 VEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRA 439

Query: 429 GNPED----FDKLQSEKGLVSDYACYTSLVS 455
           G  E+    FD++ S+ GL  D   Y  L++
Sbjct: 440 GKLEEAWKQFDEI-SKNGLEPDTIAYNILIN 469



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 193/367 (52%), Gaps = 7/367 (1%)

Query: 57  LPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +V+  +LM      G L +A++ F+ +              LI  + R  L      
Sbjct: 178 LPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTW 237

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   ++D G+SP  + F +L+  LCKEGK+ +AQ + +    +G     +++NTL+NG C
Sbjct: 238 FLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLC 297

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               L++  +L   +   G++ +V++Y+ LING CK+ ++D+A  L  EM  +GL P+ V
Sbjct: 298 LVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTV 357

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TLI   C++GR+      + A+K+  EM T G      TY +LLDG CK G LE A+
Sbjct: 358 TYNTLIGALCQSGRV------RTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAI 411

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           D+ + + K   + +   F+ L+ G CR GK+ EA +   E+ K GL+PD   Y ++I+  
Sbjct: 412 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 471

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C  G      +LL +M   G LP   T+N ++  L K  ++  A  LL+ M +    PD+
Sbjct: 472 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDE 531

Query: 416 ITYNILL 422
              ++LL
Sbjct: 532 AVTSMLL 538



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 195/359 (54%), Gaps = 9/359 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +  + T  L  + E++  G  P V V++ LM  LC+ G++K+A   F E   RG
Sbjct: 152 IIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 211

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + A   ++N+LI+G  +A    E     ++M   G  PD +T++ LI+GLCKE ++ +A+
Sbjct: 212 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQ 271

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L  M  +G  P+ + + TL++G C      + G +++A K+ + +   G+  +  +Y 
Sbjct: 272 QILELMHHKGKEPDILTYNTLMNGLC------LVGQLEDATKLFESLADRGIKLNVFSYN 325

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL++G+CK+  ++ A  + +EM  +G++   V +  LI   C+ G+V  A+++  EM   
Sbjct: 326 ILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC 385

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G     +TY +++D  CKNG  +    L + ++   H P +E ++ L++G+C+ G+L+ A
Sbjct: 386 GQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEA 445

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
               D +   G+ PD I YNIL+ G C  G   +  KL     EKG + D   +  ++ 
Sbjct: 446 WKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ 504



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D + R       L F+ E+   G S  VY +N L+H L + G  K+     +    RG
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 246

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
               A +F  LI+G CK   + E  ++  +M   G  PD+ TY+ L+NGLC   +L+DA 
Sbjct: 247 FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDAT 306

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   + +RG+  N   +  LI+G+CK+ +ID      EA ++ +EM   GL P  +TY 
Sbjct: 307 KLFESLADRGIKLNVFSYNILINGYCKDQKID------EAFRLFEEMRPKGLKPSTVTYN 360

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+   C+ G + +A  +  EM   G  L    +  L+ G C+ G + EA  + + + K 
Sbjct: 361 TLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKT 420

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
             KP+   +++++D  C+ G  +  ++   E+  +G  P    YN L+NGLC  G L  A
Sbjct: 421 EHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEA 480

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             LL  M + G +PD IT+N++++   K 
Sbjct: 481 VKLLWQMEEKGCLPDSITFNVIIQNLLKE 509



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 151/301 (50%), Gaps = 10/301 (3%)

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           KRG    AV+  TL+ G      + +  +L   M   G+  D  TY  LINGLCK  +  
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A + LHE  +     +   +  +ID  CK+G    A DM        EM   G+ PD +
Sbjct: 130 LA-IKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDM------FSEMIGAGILPDVV 182

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y+ L+DG C+ G L+ AL+  KEM  RGI  D   + +LI G  R G   E    L  M
Sbjct: 183 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLM 242

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +  G  PD  T+T++ID  CK G      ++L+ M   G  P + TYN LMNGLC  GQL
Sbjct: 243 VDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQL 302

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
           ++A  L +++ D G+  +  +YNIL+ G+CK    ++  +L  E   KGL      Y +L
Sbjct: 303 EDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTL 362

Query: 454 V 454
           +
Sbjct: 363 I 363


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 202/384 (52%), Gaps = 11/384 (2%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
           DDA+  F+ + +   R        L   + RT    + L    ++   G + ++Y  +++
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++  C+  K+  A     +  K G     V+F+TLING C    + E   L   M   G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           +P + T +AL+NGLC   ++ DA LL+  M E G  PN+V +  ++   CK+G+  +A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA-- 231

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           M+  RK    M    +  D + Y+I++DG CK+G L++A ++  EM  +G + D + +T 
Sbjct: 232 MELLRK----MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI GFC  G+  +  ++LR+M+K  + PD   ++ +IDCF K G  +    L KEM   G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
             P   TY +L++G CK  QL  AN +LD M+  G  P+  T+NIL+ G+CK    +D  
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407

Query: 434 --FDKLQSEKGLVSDYACYTSLVS 455
             F K+ S +G+V+D   Y +L+ 
Sbjct: 408 ELFRKM-SLRGVVADTVTYNTLIQ 430



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 178/326 (54%), Gaps = 10/326 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G+ P++   N L++ LC  GK+ DA ++ D   + G     V++  ++   CK+  
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 L   ME   ++ D   YS +I+GLCK+  LD+A  L +EM  +G   + +I+TT
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C  GR D      +  K++ +M    + PD + ++ L+D F KEG L  A ++ K
Sbjct: 288 LIRGFCYAGRWD------DGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EMI+RGI  D V +T+LI GFC+  ++ +A  ML  M+  G  P+  T+ ++I+ +CK  
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               G  L ++M   G +    TYN L+ G C+ G+L+ A  L   M+   V PD ++Y 
Sbjct: 402 LIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461

Query: 420 ILLEGHCKHGNPED----FDKLQSEK 441
           ILL+G C +G PE     F+K++  K
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSK 487



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 221/431 (51%), Gaps = 27/431 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            +ST+++ L      S+A +L+  +V    MG   +L        G  L G V DA++++
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVE---MGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 69  --YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
              V+ GF  + +    +L+                 M ++    + +    ++ +    
Sbjct: 201 DRMVETGFQPNEVTYGPVLKV----------------MCKSGQTALAMELLRKMEERKIK 244

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
                +++++  LCK+G + +A  +F+E   +G  A  + + TLI G C A   D+G +L
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    + PDV  +SALI+   KE +L +AE L  EM +RG++P+ V +T+LIDG CK
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             ++D A  M      +D M + G  P+  T+ IL++G+CK   ++  L++ ++M  RG+
Sbjct: 365 ENQLDKANHM------LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  LI GFC  GK+  A+ + +EM+   ++PD  +Y +++D  C NG+ +    
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + +++        +  YN +++G+C   ++ +A  L  ++   GV PD  TYNI++ G C
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLC 538

Query: 427 KHGNPEDFDKL 437
           K G+  + D L
Sbjct: 539 KKGSLSEADLL 549



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 159/298 (53%), Gaps = 6/298 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P V  F+ L+    KEGK+++A+ +  E  +RG+    V++ +LI+G CK   LD+   
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M   G  P++ T++ LING CK N +DD   L  +M  RG+  + V + TLI G C
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G++++A      +++  EM +  + PD ++Y ILLDG C  G+ E AL+I +++ K  
Sbjct: 434 ELGKLEVA------KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +ELD   +  +I G C   KV +A  +   +   G+KPD  TY ++I   CK G      
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            L ++M  DGH P   TYN L+      G    +  L++ +   G   D  T  ++++
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 24/267 (8%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--------------RG 54
            Y++++          +A  +L L+VSK G G +   F  ++                R 
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSK-GCGPNIRTFNILINGYCKANLIDDGLELFRK 412

Query: 55  THLPGLVLDA-----LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
             L G+V D      L+  + +LG L+ A + F+ +     R      + L+D +     
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   L  + +I        + ++N+++H +C   K+ DA  +F     +G+     ++N 
Sbjct: 473 PEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I G CK  +L E   L   ME  G  P+  TY+ LI     E     +  L+ E+   G
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592

Query: 230 LTPN----DVIFTTLIDGHCKNGRIDM 252
            + +     ++   L DG  K   +DM
Sbjct: 593 FSVDASTVKMVVDMLSDGRLKKSFLDM 619


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/410 (30%), Positives = 201/410 (49%), Gaps = 36/410 (8%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           LET+ T    ++ D L+     L  +D+AI+CF L+++  F      C  ++  + R N 
Sbjct: 150 LETKST----ILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNR 205

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                 FY ++       +VY FN++++ LCKEGK+K A+         G+  T V++NT
Sbjct: 206 IENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNT 265

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G      ++    + S M+  G +PD+ TY+ +++ +C E R   A  +L EM E G
Sbjct: 266 LVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIG 322

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEAR 260
           L P+ V +  LI G   NG ++MA                               ++ A 
Sbjct: 323 LVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAE 382

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            ++ E+   G+  D +TY IL++G+C+ GD + A  +  EM+  GI+     +T+LI   
Sbjct: 383 ILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL 442

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           CR  K  EA+ +  +++  G+KPD      ++D  C  G+    F LLKEM      P  
Sbjct: 443 CRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            TYN LM GLC  G+ + A  L+  M   G+ PD I+YN L+ G+ K G+
Sbjct: 503 VTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGD 552



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 189/349 (54%), Gaps = 12/349 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G+ P +  +N ++  +C EG+   A  V  E  + GL   +VS+N LI G     
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNG 341

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+  F  +  M   GM P  YTY+ LI+GL  EN+++ AE+L+ E+ E+G+  + V + 
Sbjct: 342 DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G+C++G      D K+A  + DEM T+G+ P + TYT L+   C++     A ++ 
Sbjct: 402 ILINGYCQHG------DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELF 455

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++++ +G++ D V    L+ G C  G +  A  +L+EM  + + PDD TY  ++   C  
Sbjct: 456 EKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGE 515

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    L+ EM+  G  P   +YN L++G  K G  K+A M+ D ML LG  P  +TY
Sbjct: 516 GKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTY 575

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           N LL+G  K+   E  ++L  E   +G+V + + + S++   S    K+
Sbjct: 576 NALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAKK 624



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 13/184 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + +++  G  P + + N LM   C  G +  A  +  E     ++   V++N L+ G C
Sbjct: 454 LFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLC 513

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                +E   L   M+  G++PD  +Y+ LI+G  K+     A ++  EM   G  P  +
Sbjct: 514 GEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLL 573

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  L+ G  KN   ++      A +++ EM + G+ P+          FC   +  S L
Sbjct: 574 TYNALLKGLSKNQEGEL------AEELLREMKSEGIVPND-------SSFCSVIEAMSNL 620

Query: 296 DIRK 299
           D +K
Sbjct: 621 DAKK 624


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 216/439 (49%), Gaps = 27/439 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH---------- 56
           + +Y+ ++  L       +A +LLH++   +G GS   + +      G            
Sbjct: 158 VFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 57  ----------LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105
                     LP +V  ++++        +D A++    + K+           ++    
Sbjct: 218 TYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
            +  P   +GF  ++   G  P V  +++LM  LCK G+  +A+ +FD   KRGL     
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++ TL+ G+     L E   L  +M  +G+ PD Y +S LI    K+ ++D A L+  +M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
            ++GL PN V +  +I   CK+GR++      +A    ++M   GL+P  I Y  L+ G 
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVE------DAMLYFEQMIDEGLSPGNIVYNSLIHGL 451

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C     E A ++  EM+ RGI L+ + F ++I   C+ G+V+E+E++   M+++G+KP+ 
Sbjct: 452 CTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV 511

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +I+ +C  G      +LL  M S G  P   TY+ L+NG CK  ++++A +L   
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKE 571

Query: 406 MLDLGVVPDDITYNILLEG 424
           M   GV PD ITYNI+L+G
Sbjct: 572 MESSGVSPDIITYNIILQG 590



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 164/314 (52%), Gaps = 6/314 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +  +++   KEG    A   + E   RG+    V++N++I   CKA+ +D+ 
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M  +G+ PD  TY+++++G C   +  +A   L +M   G+ P+ V ++ L+D 
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKNGR        EARKI D M   GL P+  TY  LL G+  +G L     +   M++
Sbjct: 311 LCKNGRC------MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  D+  F+ LI  + + GKV +A  +  +M + GL P+  TY  VI   CK+G  + 
Sbjct: 365 NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                ++M  +G  P    YN+L++GLC   + + A  L+  MLD G+  + I +N +++
Sbjct: 425 AMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484

Query: 424 GHCKHGNPEDFDKL 437
            HCK G   + +KL
Sbjct: 485 SHCKEGRVIESEKL 498



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 34/379 (8%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+LD G  P V  +N ++  LCK   +  A  V +   K G+    +++N++++G+C 
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 278

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           +    E       M   G+ PDV TYS L++ LCK  R  +A  +   M +RGL P    
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338

Query: 237 FTTLIDGHCKNGR-IDM----------------------------AGDMKEARKIVDEMC 267
           + TL+ G+   G  ++M                             G + +A  +  +M 
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMR 398

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GLNP+ +TY  ++   CK G +E A+   ++MI  G+   N+ + +LI G C   K  
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            AE ++ EML  G+  +   +  +ID  CK G      +L + M   G  P V TYN L+
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGL 443
           NG C  G++  A  LL  M+ +G+ P+ +TY+ L+ G+CK    ED    F +++S  G+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES-SGV 577

Query: 444 VSDYACYTSLVSKSSKYRQ 462
             D   Y  ++    + R+
Sbjct: 578 SPDIITYNIILQGLFQTRR 596



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 176/330 (53%), Gaps = 9/330 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  YVF++L+    K+GK+  A +VF +  ++GL+  AV++  +I   CK+  +++ 
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M   G+ P    Y++LI+GLC  N+ + AE L+ EM +RG+  N + F ++ID 
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ + M   G+ P+ ITY  L++G+C  G ++ A+ +   M+ 
Sbjct: 486 HCKEGRV------IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + V ++ LI+G+C+  ++ +A  + +EM   G+ PD  TY +++    +   T  
Sbjct: 540 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAA 599

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+    +A  +   +  + +  +  T+NI+++
Sbjct: 600 AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMID 659

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACY 450
              K G  ++   L    S  GLV +Y  Y
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 206/439 (46%), Gaps = 26/439 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           YS ++ +L  +    +AR +   + +K+G+    + + ++L+                  
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V   L+  Y   G +D A+  F  +R+      A     +I  + ++   
Sbjct: 363 VRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D G SP   V+N L+H LC   K + A+ +  E   RG+    + FN++
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++P+V TY+ LING C   ++D+A  LL  M   GL
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            PN V ++TLI+G+CK  R      M++A  +  EM ++G++PD ITY I+L G  +   
Sbjct: 543 KPNTVTYSTLINGYCKISR------MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + + G +++   +  ++ G C+     +A +M + +  + LK +  T+ +
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +ID   K G       L     S+G +P   TY  +   +   G L+  + L  +M D G
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716

Query: 411 VVPDDITYNILLEGHCKHG 429
              D    N ++    + G
Sbjct: 717 CTVDSGMLNFIVRELLQRG 735



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 159/318 (50%), Gaps = 14/318 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA---VSFNTLINGHC 175
           E+L  G   S+Y  N  +  + ++     A   ++   + G         ++  LI   C
Sbjct: 40  ELLRRGRGASIYGLNRALADVARDSPAA-AVSRYNRMARAGADEVTPDLCTYGILIGCCC 98

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
           +A  LD GF     +   G R D   ++ L+ GLC + R  DA +++L  M E G  PN 
Sbjct: 99  RAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNV 158

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GLNPDKITYTILLDGFCKEGDL 291
             +  L+ G C   R       +EA +++  M  +   G  PD ++YT +++GF KEGD 
Sbjct: 159 FSYNILLKGLCDENR------SQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A     EM+ RGI  D V + ++I+  C+   + +A  +L  M+K G+ PD  TY  +
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +  +C +G  K     LK+MRSDG  P V TY+ LM+ LCK+G+   A  + D+M   G+
Sbjct: 273 LHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL 332

Query: 412 VPDDITYNILLEGHCKHG 429
            P+  TY  LL+G+   G
Sbjct: 333 KPEITTYGTLLQGYATKG 350



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 7/374 (1%)

Query: 35  SKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           +K+G    A L  S +  +G +   +   A++ +    G ++DA+  F  +         
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                LI  +   N         LE+LD G   +   FN ++   CKEG++ +++ +F+ 
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             + G+    +++NTLING+C A  +DE  +L S M   G++P+  TYS LING CK +R
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           ++DA +L  EM   G++P+ + +  ++ G  +  R         A+++   +  +G   +
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT------AAAKELYVRITESGTQIE 615

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY I+L G CK    + AL + + +    ++L+   F  +I    + G+  EA+ +  
Sbjct: 616 LSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 675

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
                GL P+  TY ++ +     G  +   +L   M  +G        N ++  L + G
Sbjct: 676 AFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 735

Query: 395 QLKNANMLLDTMLD 408
           ++  A   L +M+D
Sbjct: 736 EITRAGTYL-SMID 748



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 30/276 (10%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N L++  C  GK+ +A  +       GL    V+++TLING+CK   +++ 
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME SG+ PD+ TY+ ++ GL +  R   A+ L   + E G       +  ++ G
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            CKN   D A                             G   EA+ +     +NGL P+
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY ++ +    +G LE    +   M   G  +D+     ++    + G++  A   L 
Sbjct: 686 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            + +     + +T ++ ID     G  +  +R L E
Sbjct: 746 MIDEKHFSLEASTASLFID-LLSGGKYQEYYRFLPE 780


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 11/346 (3%)

Query: 118  LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            LE+ + G  P+V  +N ++H L + G ++ AQ+ F E    GL    +++N+L+NG+CKA
Sbjct: 1214 LEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKA 1273

Query: 178  KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             NL E   L   +  +G+ P V TY+ LI+G C+   L++A +L  EM E+G  PN   +
Sbjct: 1274 GNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 1333

Query: 238  TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            T L+ G      + M      AR+  DEM + GL PD   Y   +      GD+  A ++
Sbjct: 1334 TILMKGSLNVRSLAM------AREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFEL 1387

Query: 298  RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            R+ ++  GI  D V +  LI G C+ G + +A+ +  +M+  GL+PD  TYT +I   C+
Sbjct: 1388 REVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCE 1447

Query: 358  NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
             G  +   ++   M SDG LP+  T+  +++  C+ G L +A      ML+ GV P++IT
Sbjct: 1448 RGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEIT 1507

Query: 418  YNILLEGHCKHGNPE----DFDKLQSEKGLVSDYACYTSLVSKSSK 459
            YN+L+   C+ G  +     F ++  E+GLV++   YT L+  + K
Sbjct: 1508 YNVLIHALCRMGRTQLASHHFHEML-ERGLVANKYTYTLLIDGNCK 1552



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 171/364 (46%), Gaps = 41/364 (11%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            +I  ++++ L       + E+   G  P V  +N L++  CK G +K+A ++F +  + G
Sbjct: 1231 MIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAG 1290

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            L  T +++N LI+G+C+  +L+E   LK  M   G  P+V TY+ L+ G      L  A 
Sbjct: 1291 LAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAR 1350

Query: 220  LLLHEMCERGLTPN-----------------------------------DVIFTTLIDGH 244
                EM  +GL P+                                    V +  LI G 
Sbjct: 1351 EFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGL 1410

Query: 245  CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            CK G      ++K+A+++  +M +NGL PD ITYT L+   C+ G L  A  I   MI  
Sbjct: 1411 CKTG------NLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISD 1464

Query: 305  GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            G+    V FT +I  +CR G +  A    R+ML+ G++P++ TY ++I   C+ G T+  
Sbjct: 1465 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 1524

Query: 365  FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                 EM   G +    TY  L++G CK G  ++A      M   G+ PD +T+  LL+G
Sbjct: 1525 SHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKG 1584

Query: 425  HCKH 428
               H
Sbjct: 1585 FDGH 1588



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 168/347 (48%), Gaps = 42/347 (12%)

Query: 119  EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH--ATAVSFNTLINGHCK 176
            E+L+ G  PS+  +N L+    KEG+     M+  E   RG       V++N +I G  +
Sbjct: 1109 EMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTR 1168

Query: 177  ------AKNLDEGFRL----------------------KSV------MEGSGMRPDVYTY 202
                  A  L EG RL                      K V      ME  G+ P V TY
Sbjct: 1169 KGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTY 1228

Query: 203  SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
            +A+I+GL +   ++ A++   EM   GL P+ + + +L++G+CK      AG++KEA  +
Sbjct: 1229 NAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCK------AGNLKEALLL 1282

Query: 263  VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
              ++   GL P  +TY IL+DG+C+ GDLE A  +++EM ++G   +   +T L+ G   
Sbjct: 1283 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLN 1342

Query: 323  GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
               +  A     EML  GL+PD   Y   I      GD    F L + +  +G      T
Sbjct: 1343 VRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVT 1402

Query: 383  YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            YN L++GLCK G LK+A  L   M+  G+ PD ITY  L+  HC+ G
Sbjct: 1403 YNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERG 1449



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 155/332 (46%), Gaps = 23/332 (6%)

Query: 138  KLCKEGKIKDAQM---------VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
            K  KE K +DA +          F E    G+       N ++     A   D+   +  
Sbjct: 1049 KYSKECKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHE 1108

Query: 189  VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPNDVIFTTLIDGHCK 246
             M   G+ P + TY+ L++   KE R D   +LL EM  RG    PNDV +  +I G  +
Sbjct: 1109 EMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTR 1168

Query: 247  NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             G ++ A ++ E  ++  +  +        TY  L+ G    G ++   D++ EM   GI
Sbjct: 1169 KGDLEEAAELVEGMRLSKKASS-------FTYNPLITGLLARGCVKKVYDLQLEMENEGI 1221

Query: 307  ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
                V + A+I G  + G V  A+    EM  +GL PD  TY  +++ +CK G+ K    
Sbjct: 1222 MPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALL 1281

Query: 367  LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L  ++R  G  P V TYN L++G C+ G L+ A +L + M + G +P+  TY IL++G  
Sbjct: 1282 LFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSL 1341

Query: 427  KHGN----PEDFDKLQSEKGLVSDYACYTSLV 454
               +     E FD++ S KGL  D   Y + +
Sbjct: 1342 NVRSLAMAREFFDEMLS-KGLQPDCFAYNTRI 1372


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 202/387 (52%), Gaps = 9/387 (2%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           ++G +D+ I  F+ +R+       R    ++  +  +      +  + E+ + G  P+++
Sbjct: 51  EVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIH 110

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + V+++ +CKE K+++ + + DE  ++GL  +  ++N LI+G+CK   ++    +  +M
Sbjct: 111 TYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLM 170

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
             +   P+  TY+ LI G C++  +  A  LL +M E  LTP+ V + +LI G CK G +
Sbjct: 171 HSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYL 230

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D       A ++++ M  NG+ PD+ TY++ +D  CK+G +E A  +   + ++GI+ + 
Sbjct: 231 D------SAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANE 284

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +TALI G+C+ GK+ +A  +L  ML     P+ +TY  +ID  CK    +    L++ 
Sbjct: 285 VIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMES 344

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    V TY  L+  + K G    A+ +LD M+  G  PD   Y   +   C  GN
Sbjct: 345 MIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGN 404

Query: 431 ---PEDFDKLQSEKGLVSDYACYTSLV 454
               ED   +  E+G++ D   YT ++
Sbjct: 405 IKEAEDMMSMMFERGVMPDALTYTLVI 431



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 172/322 (53%), Gaps = 9/322 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G  PSV  +N L+   CKEG ++ AQ + D       +    ++N LI G C+ K
Sbjct: 134 EMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKK 193

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+     L S M  S + P V TY++LI+G CK   LD A  LL+ M E G+ P+   ++
Sbjct: 194 NVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYS 253

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
             ID  CK GRI+      EA  + + +   G+  +++ YT L+DG+CK G ++ A  + 
Sbjct: 254 VFIDTLCKKGRIE------EANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLL 307

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+      ++  + ALI G C+  KV EA  ++  M++ GLK    TYT++I    K 
Sbjct: 308 DRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKE 367

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD     R+L +M S G+ P V  Y A ++  C  G +K A  ++  M + GV+PD +TY
Sbjct: 368 GDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTY 427

Query: 419 NILLEGHCKHG--NPEDFDKLQ 438
            ++++ +   G  NP  FD L+
Sbjct: 428 TLVIDAYGGLGLLNPA-FDVLK 448



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 177/341 (51%), Gaps = 20/341 (5%)

Query: 135 LMHKLCKEGKIKDAQM---------VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +++  CK G + +A +         VF+   K+G     VS+  LI+G C+   +DEG  
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M      P V TY+ +++ L +  R  +A  L  EM ERG  PN   +T +I+  C
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  +++      E R+I+DEM   GL P   TY  L+DG+CKEG +E+A +I   M    
Sbjct: 121 KETKLE------EGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNS 174

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              +   +  LI GFCR   V  A  +L +ML+  L P   TY  +I   CK G   + +
Sbjct: 175 CNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAY 234

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           RLL  M  +G +P   TY+  ++ LCK G+++ AN+L +++ + G+  +++ Y  L++G+
Sbjct: 235 RLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGY 294

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           CK G  +D     D++ +E  L  + + Y +L+    K R+
Sbjct: 295 CKAGKMDDANSLLDRMLTEDCL-PNSSTYNALIDGLCKERK 334



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 190/423 (44%), Gaps = 70/423 (16%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKG    A++  + L+ +G     ++  AL+  Y   G +DDA                 
Sbjct: 261 KKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDA----------------- 303

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               L+DRM+  +                  P+   +N L+  LCKE K+++A ++ +  
Sbjct: 304 --NSLLDRMLTEDC----------------LPNSSTYNALIDGLCKERKVQEALLLMESM 345

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            ++GL  T  ++  LI    K  + D   R+   M  SG +PDVY Y+A I+  C    +
Sbjct: 346 IQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNI 405

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +AE ++  M ERG+ P+ + +T +ID +   G ++ A D      ++  M   G +P  
Sbjct: 406 KEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFD------VLKRMFDTGCDPSH 459

Query: 276 ITYTILLDGFCKEG-----------------------------DLESALDIRKEMIKRGI 306
            TY+ L+    KE                                E+AL++ ++M++ G 
Sbjct: 460 HTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGC 519

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   +  LI G C+ G++  A+++   M + G+ P +A Y  +++C C+ G      R
Sbjct: 520 SPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVR 579

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L+  M   GHLP +E+ N L  GL + G  + A ++   +L  G   D++ + IL++G  
Sbjct: 580 LVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLL 639

Query: 427 KHG 429
           K+G
Sbjct: 640 KNG 642



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 198/456 (43%), Gaps = 96/456 (21%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           KK +  + +L + +LE+R T  P +V  ++L+     +G+LD A   +RLL         
Sbjct: 192 KKNVHRAMALLSKMLESRLT--PSVVTYNSLIHGQCKIGYLDSA---YRLLN-------- 238

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                    +M  N               G  P  + ++V +  LCK+G+I++A ++F+ 
Sbjct: 239 ---------LMNEN---------------GVVPDQWTYSVFIDTLCKKGRIEEANVLFNS 274

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             ++G+ A  V +  LI+G+CKA  +D+   L   M      P+  TY+ALI+GLCKE +
Sbjct: 275 LKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERK 334

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------------------- 253
           + +A LL+  M ++GL      +T LI    K G  D A                     
Sbjct: 335 VQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTA 394

Query: 254 --------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
                   G++KEA  ++  M   G+ PD +TYT+++D +   G L  A D+ K M   G
Sbjct: 395 FIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTG 454

Query: 306 IE---------------------LDNVA--------FTALISGFCRGGKVVEAERMLREM 336
            +                       NVA        F A ++   +  K   A  +  +M
Sbjct: 455 CDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKM 514

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L+ G  P+  TY  +I   CK G      +L   M   G  P+   YN+L+N  C+ G  
Sbjct: 515 LEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIY 574

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            +A  L+  M++ G +P   + N+L  G  + G+ E
Sbjct: 575 GDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKE 610



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + ++L++G SP++  +  L+  LCK G++  AQ +FD   +RG+  +   +N+L+N
Sbjct: 507 ALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLN 566

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C+     +  RL   M   G  P + + + L  GL +E   + A+++   + + G   
Sbjct: 567 CCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYND 626

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
           ++V +  LIDG  KNG  D   ++      +  M   G      TY +L++G 
Sbjct: 627 DEVAWKILIDGLLKNGLSDGCSEL------LGVMEARGCQIHPQTYRMLIEGL 673


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 202/387 (52%), Gaps = 17/387 (4%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
           DDA+  F+ + +   R        L   + RT    + L    ++   G + ++Y  +++
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++  C+  K+  A     +  K G     V+F+TLING C    + E   L   M   G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           +P + T +AL+NGLC   ++ DA LL+  M E G  PN+V +  ++   CK+G+  +A +
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 256 M---KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           +    E RKI           D + Y+I++DG CK+G L++A ++  EM  +G + D + 
Sbjct: 234 LLRKMEERKI---------KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIII 284

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +T LI GFC  G+  +  ++LR+M+K  + PD   ++ +IDCF K G  +    L KEM 
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMI 344

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P   TY +L++G CK  QL  AN +LD M+  G  P+  T+NIL+ G+CK    +
Sbjct: 345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLID 404

Query: 433 D----FDKLQSEKGLVSDYACYTSLVS 455
           D    F K+ S +G+V+D   Y +L+ 
Sbjct: 405 DGLELFRKM-SLRGVVADTVTYNTLIQ 430



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 178/326 (54%), Gaps = 10/326 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G+ P++   N L++ LC  GK+ DA ++ D   + G     V++  ++   CK+  
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 L   ME   ++ D   YS +I+GLCK+  LD+A  L +EM  +G   + +I+TT
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C  GR D      +  K++ +M    + PD + ++ L+D F KEG L  A ++ K
Sbjct: 288 LIRGFCYAGRWD------DGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EMI+RGI  D V +T+LI GFC+  ++ +A  ML  M+  G  P+  T+ ++I+ +CK  
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               G  L ++M   G +    TYN L+ G C+ G+L+ A  L   M+   V PD ++Y 
Sbjct: 402 LIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461

Query: 420 ILLEGHCKHGNPED----FDKLQSEK 441
           ILL+G C +G PE     F+K++  K
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSK 487



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 221/431 (51%), Gaps = 27/431 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            +ST+++ L      S+A +L+  +V    MG   +L        G  L G V DA++++
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVE---MGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 69  --YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
              V+ GF  + +    +L+                 M ++    + +    ++ +    
Sbjct: 201 DRMVETGFQPNEVTYGPVLKV----------------MCKSGQTALAMELLRKMEERKIK 244

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
                +++++  LCK+G + +A  +F+E   +G  A  + + TLI G C A   D+G +L
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    + PDV  +SALI+   KE +L +AE L  EM +RG++P+ V +T+LIDG CK
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             ++D A  M      +D M + G  P+  T+ IL++G+CK   ++  L++ ++M  RG+
Sbjct: 365 ENQLDKANHM------LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  LI GFC  GK+  A+ + +EM+   ++PD  +Y +++D  C NG+ +    
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + +++        +  YN +++G+C   ++ +A  L  ++   GV PD  TYNI++ G C
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLC 538

Query: 427 KHGNPEDFDKL 437
           K G+  + D L
Sbjct: 539 KKGSLSEADLL 549



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 164/332 (49%), Gaps = 28/332 (8%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P V  F+ L+    KEGK+++A+ +  E  +RG+    V++ +LI+G CK   LD+   
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M   G  P++ T++ LING CK N +DD   L  +M  RG+  + V + TLI G C
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G++++A      +++  EM +  + PD ++Y ILLDG C  G+ E AL+I +++ K  
Sbjct: 434 ELGKLEVA------KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +ELD   +  +I G C   KV +A  +   +   G+KPD  TY ++I   CK G      
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT-------------------- 405
            L ++M  DGH P   TYN L+      G    +  L++                     
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTL 607

Query: 406 --MLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             ML  G  PD  T+  LL   C   N   +D
Sbjct: 608 ARMLKAGHEPDVFTFTTLLRPFCLEENASVYD 639



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 181/432 (41%), Gaps = 53/432 (12%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +E +G     ++   L+  +   G  DD  +  R + K            LID  ++   
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                  + E++  G SP    +  L+   CKE ++  A  + D    +G      +FN 
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING+CKA  +D+G  L   M   G+  D  TY+ LI G C+  +L+ A+ L  EM  R 
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK-------------IVDEMCT-------- 268
           + P+ V +  L+DG C NG  + A ++ E  +             I+  MC         
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 269 --------NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
                    G+ PD  TY I++ G CK+G L  A  + ++M + G   +   +  LI   
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAH 572

Query: 321 CRGGKVVEAERMLRE----------------------MLKVGLKPDDATYTMVIDCFC-- 356
              G   ++ +++ E                      MLK G +PD  T+T ++  FC  
Sbjct: 573 LGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLE 632

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +N        L K M++ G+ P V TYN ++ GL     +     +LD M + G  P+ +
Sbjct: 633 ENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAV 692

Query: 417 TYNILLEGHCKH 428
           T +  + G CK 
Sbjct: 693 TKSTFISGLCKQ 704



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 166/400 (41%), Gaps = 38/400 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y++++          +A  +L L+VSK G G +   F                + L+  
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSK-GCGPNIRTF----------------NILING 396

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y     +DD ++ FR +              LI          V    + E++     P 
Sbjct: 397 YCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  + +L+  LC  G+ + A  +F++  K  +      +N +I+G C A  +D+ + L  
Sbjct: 457 IVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 516

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +   G++PDV TY+ +I GLCK+  L +A+LL  +M E G +PN   +  LI  H   G
Sbjct: 517 SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEG 576

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                 D  ++ K+++E+   G + D  T             L  AL     M+K G E 
Sbjct: 577 ------DATKSAKLIEEIKRCGFSVDAST-------------LRFALSTLARMLKAGHEP 617

Query: 309 DNVAFTALISGFC--RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           D   FT L+  FC      V +A  + + M  +G KP+  TY  VI              
Sbjct: 618 DVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPG 677

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           +L +M   G  P   T +  ++GLCK     +A +LL  M
Sbjct: 678 VLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKM 717


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 199/388 (51%), Gaps = 18/388 (4%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           L+DAI  F  +LR          C+ L+  ++R   P + +  Y ++        +Y F 
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCK-LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFT 118

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+   C   K+  A   F +  K GLH   V+FNTL++G C    + E   L   M  +
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG----R 249
             RP+V T++ L+NGLC+E R+ +A  LL  M E GL P  + + T++DG CK G     
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSA 238

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D+   M+E   I+         P+ + Y+ ++D  CK+G    A ++  EM ++GI  D
Sbjct: 239 LDLLRKMEEISHII---------PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              + ++I GFC  G+  +AE++L+EML+  + PD  TY  +I+ F K G       L  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G +P   TY+++++G CK  +L  A  +   M   G  P+ IT+N L++G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLV 454
             +D  +L    +E GLV+D   Y +L+
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    +     + E+ + G  P ++ +N ++   C  G+  DA+ +  E  +R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++N LIN   K     E   L   M   G+ P+  TYS++I+G CK+NRLD AE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M  +G +PN + F TLIDG+C   RID      +  +++ EM   GL  D  TY 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRID------DGMELLHEMTETGLVADTTTYN 434

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GF   GDL +ALD+ +EMI  G+  D V    L+ G C  GK+ +A  M + M K 
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 340 -----------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                      G++PD  TY ++I      G       L +EM   G +P   TY+++++
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLCK  +L  A  + D+M      P+ +T+  L+ G+CK G  +D  +L  E   +G+V+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 446 DYACYTSLV 454
           +   Y +L+
Sbjct: 615 NAITYITLI 623



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 189/372 (50%), Gaps = 27/372 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ DR+      +  L  + ++ +    P+V  F  LM+ LC+EG+I +A  + D   + 
Sbjct: 160 CVEDRV------SEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG-SGMRPDVYTYSALINGLCKENRLDD 217
           GL  T +++ T+++G CK  +      L   ME  S + P+V  YSA+I+ LCK+ R  D
Sbjct: 214 GLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ L  EM E+G+ P+   + ++I G C +GR        +A +++ EM    ++PD +T
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR------WSDAEQLLQEMLERKISPDVVT 327

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++ F KEG    A ++  EM+ RGI  + + ++++I GFC+  ++  AE M   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  P+  T+  +ID +C       G  LL EM   G +    TYN L++G    G L 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK----------GL 443
            A  LL  M+  G+ PD +T + LL+G C +G  +D    F  +Q  K          G+
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 444 VSDYACYTSLVS 455
             D   Y  L+S
Sbjct: 508 EPDVQTYNILIS 519



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 190/390 (48%), Gaps = 10/390 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KG+  +  LF+ +L +R   LP +V    LM V V +   D  I  ++ + +   R    
Sbjct: 58  KGLEDAIDLFSDMLRSR--PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIY 115

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI      +     L  + +I   G  P V  FN L+H LC E ++ +A  +F + 
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            +       V+F TL+NG C+   + E   L   M   G++P   TY  +++G+CK    
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDT 235

Query: 216 DDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
             A  LL +M E   + PN VI++ +ID  CK+GR        +A+ +  EM   G+ PD
Sbjct: 236 VSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGR------HSDAQNLFTEMQEKGIFPD 289

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY  ++ GFC  G    A  + +EM++R I  D V + ALI+ F + GK  EAE +  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML  G+ P+  TY+ +ID FCK         +   M + G  P + T+N L++G C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           ++ +   LL  M + G+V D  TYN L+ G
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHG 439



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 5/394 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  S A    + ++ +G        +++++ +   G   DA Q  + + +        
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+  ++          Y E+L  G  P+   ++ ++   CK+ ++  A+ +F   
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +G     ++FNTLI+G+C AK +D+G  L   M  +G+  D  TY+ LI+G      L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI----DMAGDMKEARKIVDEMCT-NG 270
           + A  LL EM   GL P+ V   TL+DG C NG++    +M   M++++K +D     NG
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD  TY IL+ G   EG    A ++ +EM  RGI  D + ++++I G C+  ++ EA 
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +M   M      P+  T+T +I+ +CK G    G  L  EM   G +    TY  L+ G 
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            K G +  A  +   M+  GV PD IT   +L G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 17/265 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G       +N L+H     G +  A  +  E    GL    V+ +TL++G C   
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479

Query: 179 NLDEGFRLKSVMEGS-----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            L +   +  VM+ S           G+ PDV TY+ LI+GL  E +  +AE L  EM  
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+ P+ + ++++IDG CK  R+D      EA ++ D M +   +P+ +T+T L++G+CK
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLD------EATQMFDSMGSKSFSPNVVTFTTLINGYCK 593

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++  L++  EM +RGI  + + +  LI GF + G +  A  + +EM+  G+ PD  T
Sbjct: 594 AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMR 372
              ++       + K    +L++++
Sbjct: 654 IRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 11/207 (5%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRI----PARGCR-------CLIDRMMRTNLPT 111
           D L+    D G L DA++ F++++K    +    P  G          LI  ++      
Sbjct: 469 DTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL 528

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                Y E+   G  P    ++ ++  LCK+ ++ +A  +FD  G +      V+F TLI
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG+CKA  +D+G  L   M   G+  +  TY  LI G  K   ++ A  +  EM   G+ 
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           P+ +    ++ G      +  A  M E
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 199/388 (51%), Gaps = 18/388 (4%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           L+DAI  F  +LR          C+ L+  ++R   P + +  Y ++        +Y F 
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCK-LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFT 118

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+   C   K+  A   F +  K GLH   V+FNTL++G C    + E   L   M  +
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG----R 249
             RP+V T++ L+NGLC+E R+ +A  LL  M E GL P  + + T++DG CK G     
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +++   M+E   I+         P+ + Y+ ++D  CK+G    A ++  EM ++GI  D
Sbjct: 239 LNLLRKMEEVSHII---------PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              + ++I GFC  G+  +AE++L+EML+  + PD  TY  +I+ F K G       L  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G +P   TY+++++G CK  +L  A  +   M   G  P+ IT+N L++G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLV 454
             +D  +L    +E GLV+D   Y +L+
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    +     + E+ + G  P ++ +N ++   C  G+  DA+ +  E  +R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++N LIN   K     E   L   M   G+ P+  TYS++I+G CK+NRLD AE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M  +G +PN + F TLIDG+C   RID      +  +++ EM   GL  D  TY 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRID------DGMELLHEMTETGLVADTTTYN 434

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GF   GDL +ALD+ +EMI  G+  D V    L+ G C  GK+ +A  M + M K 
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 340 -----------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                      G++PD  TY ++I      G       L +EM   G +P   TY+++++
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLCK  +L  A  + D+M      P+ +T+  L+ G+CK G  +D  +L  E   +G+V+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 446 DYACYTSLV 454
           +   Y +L+
Sbjct: 615 NAITYITLI 623



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 189/372 (50%), Gaps = 27/372 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ DR+      +  L  + ++ +    P+V  F  LM+ LC+EG+I +A  + D   + 
Sbjct: 160 CVEDRV------SEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG-SGMRPDVYTYSALINGLCKENRLDD 217
           GL  T +++ T+++G CK  +      L   ME  S + P+V  YSA+I+ LCK+ R  D
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ L  EM E+G+ P+   + ++I G C +GR        +A +++ EM    ++PD +T
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR------WSDAEQLLQEMLERKISPDVVT 327

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++ F KEG    A ++  EM+ RGI  + + ++++I GFC+  ++  AE M   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  P+  T+  +ID +C       G  LL EM   G +    TYN L++G    G L 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK----------GL 443
            A  LL  M+  G+ PD +T + LL+G C +G  +D    F  +Q  K          G+
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 444 VSDYACYTSLVS 455
             D   Y  L+S
Sbjct: 508 EPDVQTYNILIS 519



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 191/390 (48%), Gaps = 10/390 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KG+  +  LF+ +L +R   LP +V    LM V V +   D  I  ++ + +   R    
Sbjct: 58  KGLEDAIDLFSDMLRSR--PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIY 115

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI      +     L  + +I   G  P V  FN L+H LC E ++ +A  +F + 
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            +       V+F TL+NG C+   + E   L   M   G++P   TY  +++G+CK+   
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 216 DDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
             A  LL +M E   + PN VI++ +ID  CK+GR        +A+ +  EM   G+ PD
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGR------HSDAQNLFTEMQEKGIFPD 289

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY  ++ GFC  G    A  + +EM++R I  D V + ALI+ F + GK  EAE +  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML  G+ P+  TY+ +ID FCK         +   M + G  P + T+N L++G C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           ++ +   LL  M + G+V D  TYN L+ G
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHG 439



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 5/394 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  S A    + ++ +G        +++++ +   G   DA Q  + + +        
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+  ++          Y E+L  G  P+   ++ ++   CK+ ++  A+ +F   
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +G     ++FNTLI+G+C AK +D+G  L   M  +G+  D  TY+ LI+G      L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI----DMAGDMKEARKIVDEMCT-NG 270
           + A  LL EM   GL P+ V   TL+DG C NG++    +M   M++++K +D     NG
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD  TY IL+ G   EG    A ++ +EM  RGI  D + ++++I G C+  ++ EA 
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +M   M      P+  T+T +I+ +CK G    G  L  EM   G +    TY  L+ G 
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            K G +  A  +   M+  GV PD IT   +L G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 17/265 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G       +N L+H     G +  A  +  E    GL    V+ +TL++G C   
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479

Query: 179 NLDEGFRLKSVMEGS-----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            L +   +  VM+ S           G+ PDV TY+ LI+GL  E +  +AE L  EM  
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+ P+ + ++++IDG CK  R+D      EA ++ D M +   +P+ +T+T L++G+CK
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLD------EATQMFDSMGSKSFSPNVVTFTTLINGYCK 593

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++  L++  EM +RGI  + + +  LI GF + G +  A  + +EM+  G+ PD  T
Sbjct: 594 AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMR 372
              ++       + K    +L++++
Sbjct: 654 IRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 11/207 (5%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRI----PARGCR-------CLIDRMMRTNLPT 111
           D L+    D G L DA++ F++++K    +    P  G          LI  ++      
Sbjct: 469 DTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL 528

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                Y E+   G  P    ++ ++  LCK+ ++ +A  +FD  G +      V+F TLI
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG+CKA  +D+G  L   M   G+  +  TY  LI G  K   ++ A  +  EM   G+ 
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           P+ +    ++ G      +  A  M E
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 199/384 (51%), Gaps = 10/384 (2%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           L+DAI  F  +LR          C+ L+  ++R   P + +  Y ++        +Y F 
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCK-LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFT 118

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+   C   K+  A   F +  K GLH   V+FNTL++G C    + E   L   M  +
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
             RP+V T++ L+NGLC+E R+ +A  LL  M E GL P  + + T++DG CK G  D  
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG--DTV 236

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
             +   RK+ +    + + P+ + Y+ ++D  CK+G    A ++  EM ++GI  D   +
Sbjct: 237 SALNLLRKMEE---VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            ++I GFC  G+  +AE++L+EML+  + PD  TY  +I+ F K G       L  EM  
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P   TY+++++G CK  +L  A  +   M   G  P+ IT+N L++G+C     +D
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 434 FDKL---QSEKGLVSDYACYTSLV 454
             +L    +E GLV+D   Y +L+
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLI 437



 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    +     + E+ + G  P ++ +N ++   C  G+  DA+ +  E  +R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++N LIN   K     E   L   M   G+ P+  TYS++I+G CK+NRLD AE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M  +G +PN + F TLIDG+C   RID      +  +++ EM   GL  D  TY 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRID------DGMELLHEMTETGLVADTTTYN 434

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GF   GDL +ALD+ +EMI  G+  D V    L+ G C  GK+ +A  M + M K 
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 340 -----------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                      G++PD  TY ++I      G       L +EM   G +P   TY+++++
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLCK  +L  A  + D+M      P+ +T+  L+ G+CK G  +D  +L  E   +G+V+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 446 DYACYTSLV 454
           +   Y +L+
Sbjct: 615 NAITYITLI 623



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 189/372 (50%), Gaps = 27/372 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ DR+      +  L  + ++ +    P+V  F  LM+ LC+EG+I +A  + D   + 
Sbjct: 160 CVEDRV------SEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG-SGMRPDVYTYSALINGLCKENRLDD 217
           GL  T +++ T+++G CK  +      L   ME  S + P+V  YSA+I+ LCK+ R  D
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ L  EM E+G+ P+   + ++I G C +GR        +A +++ EM    ++PD +T
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR------WSDAEQLLQEMLERKISPDVVT 327

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++ F KEG    A ++  EM+ RGI  + + ++++I GFC+  ++  AE M   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  P+  T+  +ID +C       G  LL EM   G +    TYN L++G    G L 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK----------GL 443
            A  LL  M+  G+ PD +T + LL+G C +G  +D    F  +Q  K          G+
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 444 VSDYACYTSLVS 455
             D   Y  L+S
Sbjct: 508 EPDVQTYNILIS 519



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 191/390 (48%), Gaps = 10/390 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KG+  +  LF+ +L +R   LP +V    LM V V +   D  I  ++ + +   R    
Sbjct: 58  KGLEDAIDLFSDMLRSR--PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIY 115

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI      +     L  + ++   G  P V  FN L+H LC E ++ +A  +F + 
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            +       V+F TL+NG C+   + E   L   M   G++P   TY  +++G+CK+   
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 216 DDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
             A  LL +M E   + PN VI++ +ID  CK+GR        +A+ +  EM   G+ PD
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGR------HSDAQNLFTEMQEKGIFPD 289

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY  ++ GFC  G    A  + +EM++R I  D V + ALI+ F + GK  EAE +  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML  G+ P+  TY+ +ID FCK         +   M + G  P + T+N L++G C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           ++ +   LL  M + G+V D  TYN L+ G
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHG 439



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 5/394 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  S A    + ++ +G        +++++ +   G   DA Q  + + +        
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+  ++          Y E+L  G  P+   ++ ++   CK+ ++  A+ +F   
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +G     ++FNTLI+G+C AK +D+G  L   M  +G+  D  TY+ LI+G      L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI----DMAGDMKEARKIVDEMCT-NG 270
           + A  LL EM   GL P+ V   TL+DG C NG++    +M   M++++K +D     NG
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD  TY IL+ G   EG    A ++ +EM  RGI  D + ++++I G C+  ++ EA 
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +M   M      P+  T+T +I+ +CK G    G  L  EM   G +    TY  L+ G 
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            K G +  A  +   M+  GV PD IT   +L G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 17/265 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G       +N L+H     G +  A  +  E    GL    V+ +TL++G C   
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479

Query: 179 NLDEGFRLKSVMEGS-----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            L +   +  VM+ S           G+ PDV TY+ LI+GL  E +  +AE L  EM  
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+ P+ + ++++IDG CK  R+D      EA ++ D M +   +P+ +T+T L++G+CK
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLD------EATQMFDSMGSKSFSPNVVTFTTLINGYCK 593

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++  L++  EM +RGI  + + +  LI GF + G +  A  + +EM+  G+ PD  T
Sbjct: 594 AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMR 372
              ++       + K    +L++++
Sbjct: 654 IRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 11/207 (5%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRI----PARGCR-------CLIDRMMRTNLPT 111
           D L+    D G L DA++ F++++K    +    P  G          LI  ++      
Sbjct: 469 DTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL 528

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                Y E+   G  P    ++ ++  LCK+ ++ +A  +FD  G +      V+F TLI
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG+CKA  +D+G  L   M   G+  +  TY  LI G  K   ++ A  +  EM   G+ 
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           P+ +    ++ G      +  A  M E
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 199/388 (51%), Gaps = 18/388 (4%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           L+DAI  F  +LR          C+ L+  ++R   P + +  Y ++        +Y FN
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCK-LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFN 118

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+   C   K+  A   F +  K GLH   V+F TL++G C    + E   L   M  +
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG----R 249
             RP+V T++ L+NGLC+E R+ +A  LL  M E GL P  + + T++DG CK G     
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +++   M+E   I+         P+ + Y+ ++D  CK+G    A ++  EM ++GI  D
Sbjct: 239 LNLLRKMEEVSHII---------PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              + ++I GFC  G+  +AE++L+EML+  + PD  TY  +I+ F K G       L  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G +P   TY+++++G CK  +L  A  +   M   G  P+ IT+N L++G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLV 454
             +D  +L    +E GLV+D   Y +L+
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    +     + E+ + G  P ++ +N ++   C  G+  DA+ +  E  +R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++N LIN   K     E   L   M   G+ P+  TYS++I+G CK+NRLD AE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M  +G +PN + F TLIDG+C   RID      +  +++ EM   GL  D  TY 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRID------DGMELLHEMTETGLVADTTTYN 434

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GF   GDL +ALD+ +EMI  G+  D V    L+ G C  GK+ +A  M + M K 
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 340 -----------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                      G++PD  TY ++I      G       L +EM   G +P   TY+++++
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLCK  +L  A  + D+M      P+ +T+  L+ G+CK G  +D  +L  E   +G+V+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 446 DYACYTSLV 454
           +   Y +L+
Sbjct: 615 NAITYITLI 623



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 189/372 (50%), Gaps = 27/372 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ DR+      +  L  + ++ +    P+V  F  LM+ LC+EG+I +A  + D   + 
Sbjct: 160 CVEDRV------SEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG-SGMRPDVYTYSALINGLCKENRLDD 217
           GL  T +++ T+++G CK  +      L   ME  S + P+V  YSA+I+ LCK+ R  D
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ L  EM E+G+ P+   + ++I G C +GR        +A +++ EM    ++PD +T
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR------WSDAEQLLQEMLERKISPDVVT 327

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++ F KEG    A ++  EM+ RGI  + + ++++I GFC+  ++  AE M   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  P+  T+  +ID +C       G  LL EM   G +    TYN L++G    G L 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK----------GL 443
            A  LL  M+  G+ PD +T + LL+G C +G  +D    F  +Q  K          G+
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 444 VSDYACYTSLVS 455
             D   Y  L+S
Sbjct: 508 EPDVQTYNILIS 519



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 190/390 (48%), Gaps = 10/390 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KG+  +  LF+ +L +R   LP +V    LM V V +   D  I  ++ + +   R    
Sbjct: 58  KGLEDAIDLFSDMLRSR--PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIY 115

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI      +     L  + +I   G  P V  F  L+H LC E ++ +A  +F + 
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQM 175

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            +       V+F TL+NG C+   + E   L   M   G++P   TY  +++G+CK+   
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 216 DDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
             A  LL +M E   + PN VI++ +ID  CK+GR        +A+ +  EM   G+ PD
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGR------HSDAQNLFTEMQEKGIFPD 289

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY  ++ GFC  G    A  + +EM++R I  D V + ALI+ F + GK  EAE +  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML  G+ P+  TY+ +ID FCK         +   M + G  P + T+N L++G C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           ++ +   LL  M + G+V D  TYN L+ G
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHG 439



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 5/394 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  S A    + ++ +G        +++++ +   G   DA Q  + + +        
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+  ++          Y E+L  G  P+   ++ ++   CK+ ++  A+ +F   
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +G     ++FNTLI+G+C AK +D+G  L   M  +G+  D  TY+ LI+G      L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI----DMAGDMKEARKIVDEMCT-NG 270
           + A  LL EM   GL P+ V   TL+DG C NG++    +M   M++++K +D     NG
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD  TY IL+ G   EG    A ++ +EM  RGI  D + ++++I G C+  ++ EA 
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +M   M      P+  T+T +I+ +CK G    G  L  EM   G +    TY  L+ G 
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            K G +  A  +   M+  GV PD IT   +L G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 17/265 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G       +N L+H     G +  A  +  E    GL    V+ +TL++G C   
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479

Query: 179 NLDEGFRLKSVMEGS-----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            L +   +  VM+ S           G+ PDV TY+ LI+GL  E +  +AE L  EM  
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+ P+ + ++++IDG CK  R+D      EA ++ D M +   +P+ +T+T L++G+CK
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLD------EATQMFDSMGSKSFSPNVVTFTTLINGYCK 593

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++  L++  EM +RGI  + + +  LI GF + G +  A  + +EM+  G+ PD  T
Sbjct: 594 AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMR 372
              ++       + K    +L++++
Sbjct: 654 IRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 11/207 (5%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRI----PARGCR-------CLIDRMMRTNLPT 111
           D L+    D G L DA++ F++++K    +    P  G          LI  ++      
Sbjct: 469 DTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL 528

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                Y E+   G  P    ++ ++  LCK+ ++ +A  +FD  G +      V+F TLI
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG+CKA  +D+G  L   M   G+  +  TY  LI G  K   ++ A  +  EM   G+ 
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           P+ +    ++ G      +  A  M E
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 209/402 (51%), Gaps = 7/402 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL  +  +  M  + S++  ++  +G     +  + +++ +   G +D A   F  + + 
Sbjct: 439 LLSWLCKEGKMSEACSIWEKMVR-KGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEK 497

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
             +        L+D   +        G Y  +     +PS +  N++++ LCK G+  ++
Sbjct: 498 GLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSES 557

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           Q    +  + G   T +++N +I+G  K  +++    + + M   G+ P+V+TY+ LING
Sbjct: 558 QDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLING 617

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            CK N +D A  ++ EM  +G+  +  ++  LIDG C+ G      DM  A +++ E+  
Sbjct: 618 FCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKG------DMVNASQLLSELQE 671

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL+P+K+ Y+ ++ GF K  ++E+AL + K MI  GI  D   +T LISG  + GK++ 
Sbjct: 672 VGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLF 731

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +  EML  G+ PD  TY+++I   C  G  +   ++L++M      P V  YN L+ 
Sbjct: 732 ASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLIT 791

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           G  K G L+ A  L + MLD G+VPDD TY+IL+ G  K GN
Sbjct: 792 GHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGN 833



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 208/416 (50%), Gaps = 43/416 (10%)

Query: 58  PGLVLDALMIVYV-DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P  V  A++I +    G +D A + +  ++             LI   ++   P      
Sbjct: 362 PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKL 421

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E +  G + +V+ +N L+  LCKEGK+ +A  ++++  ++G+  + VS+N +I GHC+
Sbjct: 422 FDEAVACGIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQ 480

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSAL------------------------------- 205
             ++D    +   M   G++P++ TYS L                               
Sbjct: 481 QGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFT 540

Query: 206 ----INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
               INGLCK  R  +++  L ++ + G  P  + +  +IDG  K G ++       A  
Sbjct: 541 CNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVN------SALA 594

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           +  EMC  G++P+  TYT L++GFCK  +++ AL +  EM  +GIELD   + ALI GFC
Sbjct: 595 VYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFC 654

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           R G +V A ++L E+ +VGL P+   Y+ +I  F K  + +    L K M ++G    ++
Sbjct: 655 RKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQ 714

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            Y  L++GL K G+L  A+ L   ML  G++PD ITY++L+ G C  G  E+  K+
Sbjct: 715 IYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKI 770



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 212/442 (47%), Gaps = 27/442 (6%)

Query: 17  LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLD 76
           LV + M  +ARD+ + + SK   G  A++   I  +                 +  G L+
Sbjct: 199 LVKNNMIREARDVYNKMASKGVKGDCATISVMIRAS-----------------MREGKLE 241

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           +A   FR  +     + AR    +I+ + +       LG   E+ D G+ P   +F  ++
Sbjct: 242 EAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVI 301

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
               K+GK+ +A  V  E    G     V   TL+ G+CK  +LD    L   M  +G+ 
Sbjct: 302 GVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGIC 361

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P+  TY+ +I   CK   +D A  + ++M  + ++P      +LI G+ K      A   
Sbjct: 362 PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLK------ARSP 415

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           +EA K+ DE    G+  +  TY  LL   CKEG +  A  I ++M+++G+    V++  +
Sbjct: 416 EEASKLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNM 474

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I G C+ G +  A  +  EML+ GLKP+  TY++++D + K GDT+  F L   MR +  
Sbjct: 475 ILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENI 534

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P+  T N ++NGLCK G+   +   L  ++  G +P  +TYN +++G  K G+      
Sbjct: 535 APSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALA 594

Query: 437 LQSEK---GLVSDYACYTSLVS 455
           + +E    G+  +   YT+L++
Sbjct: 595 VYTEMCKIGVSPNVFTYTNLIN 616



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 174/358 (48%), Gaps = 7/358 (1%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M S+  +F  +LE +G     +    LM  Y   G  + A   +  +R          C 
Sbjct: 484 MDSANGVFVEMLE-KGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCN 542

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            +I+ + +    + +     +++  G+ P+   +N ++    KEG +  A  V+ E  K 
Sbjct: 543 IIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI 602

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+     ++  LING CK+ N+D   ++   M+  G+  DV  Y ALI+G C++  + +A
Sbjct: 603 GVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNA 662

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL E+ E GL+PN V+++++I G  K        +M+ A  +   M   G+  D   Y
Sbjct: 663 SQLLSELQEVGLSPNKVVYSSMISGFRK------LQNMEAALHLHKRMINEGIPCDLQIY 716

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T L+ G  KEG L  A ++  EM+ +GI  D + ++ LI G C  G++  A+++L +M +
Sbjct: 717 TTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDR 776

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
             + P    Y  +I    K G+ +  FRL  EM   G +P   TY+ L+NG  K G L
Sbjct: 777 KCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 188/403 (46%), Gaps = 46/403 (11%)

Query: 86  RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145
           R+  F   +R    L++  ++T      +  +  +++    P + V N+ + +L K   I
Sbjct: 146 RRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMI 205

Query: 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
           ++A+ V+++   +G+     + + +I    +   L+E        +  G+  D   YS +
Sbjct: 206 REARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIV 265

Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIF---------------------------- 237
           I  +CK+     A  LL EM ++G  P++VIF                            
Sbjct: 266 IEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGK 325

Query: 238 -------TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
                  TTL+ G+CK       GD+  A ++ D+M  NG+ P+ +TY ++++  CK G+
Sbjct: 326 PMNVVVATTLMKGYCKQ------GDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGN 379

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A +I  +M  + I        +LI G+ +     EA ++  E +  G+  +  TY  
Sbjct: 380 MDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIA-NVFTYNS 438

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           ++   CK G       + ++M   G  P+V +YN ++ G C+ G + +AN +   ML+ G
Sbjct: 439 LLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKG 498

Query: 411 VVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           + P+ ITY++L++G+ K G+ E     +D+++ E    SD+ C
Sbjct: 499 LKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTC 541



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 11/223 (4%)

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           +F  L++ + K  RI+ A D        + +    + P      I L    K   +  A 
Sbjct: 156 VFNYLLNSYVKTKRINDAVD------CFNSLIEKDIVPCLTVMNIFLSELVKNNMIREAR 209

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           D+  +M  +G++ D    + +I    R GK+ EAE   RE    G++ D   Y++VI+  
Sbjct: 210 DVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAV 269

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK  D+     LL+EMR  G +P    +  ++    K G++  A  +   ML  G   + 
Sbjct: 270 CKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNV 329

Query: 416 ITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLV 454
           +    L++G+CK G+     E FDK+ +E G+  +   Y  ++
Sbjct: 330 VVATTLMKGYCKQGDLDSALELFDKM-NENGICPNNVTYAVII 371


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 220/454 (48%), Gaps = 30/454 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPGLVLDA 64
           L+ Y+ +++        S A  LL  ++ K G   S    +S+L     G  +   V  A
Sbjct: 82  LYTYNILINCFCRRSQISLALALLGKMM-KLGYEPSIVTLSSLLNGYCHGKRISDAV--A 138

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+   V++G+  D I    L+   +    A     L+DRM++                 G
Sbjct: 139 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR----------------G 182

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P++  + V+++ LCK G    A  + ++     + A  V FNT+I+  CK +++D+  
Sbjct: 183 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 242

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M E+ + PN V F  LID  
Sbjct: 243 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 302

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+        EA K+ D+M    ++PD  TY  L++GFC    L+ A  + + M+ +
Sbjct: 303 VKEGKF------VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 356

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
               D V +  LI GFC+  +V +   + REM   GL  D  TYT +I     +GD    
Sbjct: 357 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 416

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            ++ K+M SDG  P + TY+ L++GLC +G+L+ A  + D M    +  D   Y  ++EG
Sbjct: 417 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 476

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            CK G  +D   L    S KG+  +   Y +++S
Sbjct: 477 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS 510



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 201/437 (45%), Gaps = 24/437 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS------------------KKGMGSSAS 44
           +R     ++T++H L  H   S+A  L+  +V                   K+G    A 
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 207

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
              + +E        ++ + ++        +DDA+  F+ +     R        LI  +
Sbjct: 208 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 267

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
                 +       ++++   +P++  FN L+    KEGK  +A+ ++D+  KR +    
Sbjct: 268 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 327

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            ++N+L+NG C    LD+  ++   M      PDV TY+ LI G CK  R++D   L  E
Sbjct: 328 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 387

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  RGL  + V +TTLI G   +G      D   A+K+  +M ++G+ PD +TY+ILLDG
Sbjct: 388 MSHRGLVGDTVTYTTLIQGLFHDG------DCDNAQKVFKQMVSDGVPPDIMTYSILLDG 441

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            C  G LE AL++   M K  I+LD   +T +I G C+ GKV +   +   +   G+KP+
Sbjct: 442 LCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 501

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  +I   C     +  + LLK+M+ DG LP   TYN L+    + G    +  L+ 
Sbjct: 502 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIR 561

Query: 405 TMLDLGVVPDDITYNIL 421
            M     V D  T  ++
Sbjct: 562 EMRSCRFVGDASTIGLV 578



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 169/379 (44%), Gaps = 67/379 (17%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA  +F    K     + V FN L++   K K  D    L   M+   +   +YTY+
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
            LIN  C+ +++  A  LL +M + G  P+ V  ++L++G+C   RI  A          
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD---- 290
                                  EA  +VD M   G  P+ +TY ++++G CK GD    
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 206

Query: 291 -------------------------------LESALDIRKEMIKRGIELDNVAFTALISG 319
                                          ++ AL++ KEM  +GI  + V +++LIS 
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C  G+  +A ++L +M++  + P+  T+  +ID F K G      +L  +M      P 
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 326

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-- 437
           + TYN+L+NG C H +L  A  + + M+     PD +TYN L++G CK    ED  +L  
Sbjct: 327 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 386

Query: 438 -QSEKGLVSDYACYTSLVS 455
             S +GLV D   YT+L+ 
Sbjct: 387 EMSHRGLVGDTVTYTTLIQ 405



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG  DM  D  +A  +   M  +   P  + +  LL    K    +  + + ++M +  
Sbjct: 20  RNGLHDMKLD--DAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLE 77

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I      +  LI+ FCR  ++  A  +L +M+K+G +P   T + +++ +C         
Sbjct: 78  IVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 137

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ +M   G+ P   T+  L++GL  H +   A  L+D M+  G  P+ +TY +++ G 
Sbjct: 138 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 197

Query: 426 CKHGNPE----DFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           CK G+ +      +K+++ K + +D   + +++    KYR 
Sbjct: 198 CKRGDTDLALNLLNKMEAAK-IEADVVIFNTIIDSLCKYRH 237


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 179/333 (53%), Gaps = 14/333 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  + ++++ G +P V  FN L++ LC EG++ +A  + ++   +GLH   V++ T++N
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK  +      L S ME + ++PDV  YSA+I+ LCK+    DA+ L  EM E+G+ P
Sbjct: 270 GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 329

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   +  +IDG C  GR        +A++++ +M    +NPD +T+  L+    KEG L 
Sbjct: 330 NVFTYNCMIDGFCSFGR------WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLF 383

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM+ R I  D V + ++I GFC+  +  +A+ M   M      PD  T+  +I
Sbjct: 384 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTII 439

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D +C+      G +LL+E+   G +    TYN L++G C+   L  A  L   M+  GV 
Sbjct: 440 DVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVC 499

Query: 413 PDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           PD IT NILL G C++   E+    F+ +Q  K
Sbjct: 500 PDTITCNILLYGFCENEKLEEALELFEVIQMSK 532



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 212/454 (46%), Gaps = 48/454 (10%)

Query: 25  QARDLLHLIVSKKGMGSSASLFASILE------TRGTHLPGLVLDALMIVYVDLGFLDDA 78
            +R L+H  V++KG  S  SL     E        G+H                  LDDA
Sbjct: 45  NSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHY--------------FKSLDDA 90

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           I  F  + +      A  C  +I   +R N P V +  Y ++       ++Y FN+L+  
Sbjct: 91  IDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKC 150

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----- 193
            C   K+  +   F +  K G     V+FNTL++G C    + E   L   M  +     
Sbjct: 151 FCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEA 210

Query: 194 ----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                     G+ P V T++ LINGLC E R+ +A  L+++M  +GL  + V + T+++G
Sbjct: 211 VALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK       GD K A  ++ +M    + PD + Y+ ++D  CK+G    A  +  EM++
Sbjct: 271 MCK------MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 324

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +GI  +   +  +I GFC  G+  +A+R+LR+M++  + PD  T+  +I    K G    
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFE 384

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L  EM      P   TYN+++ G CKH +  +A      M DL   PD +T+N +++
Sbjct: 385 AEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH----MFDLMASPDVVTFNTIID 440

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            +C+    ++  +L  E   +GLV++   Y +L+
Sbjct: 441 VYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 474



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 172/341 (50%), Gaps = 10/341 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +IDR+ +    +     + E+L+ G +P+V+ +N ++   C  G+  DAQ +  +  +R 
Sbjct: 302 IIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE 361

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++   ++FN LI+   K   L E  +L   M    + PD  TY+++I G CK NR DDA+
Sbjct: 362 INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAK 421

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M     +P+ V F T+ID +C+  R+D      E  +++ E+   GL  +  TY 
Sbjct: 422 HMFDLMA----SPDVVTFNTIIDVYCRAKRVD------EGMQLLREISRRGLVANTTTYN 471

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC+  +L +A D+ +EMI  G+  D +    L+ GFC   K+ EA  +   +   
Sbjct: 472 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 531

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +  D   Y ++I   CK       + L   +   G  P V+TYN +++G C    + +A
Sbjct: 532 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N+L   M D G  PD+ TYN L+ G  K G  +   +L SE
Sbjct: 592 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE 632



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 31/224 (13%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + D   SP V  FN ++   C+  ++ +   +  E  +RGL A   ++NTLI+G C+  N
Sbjct: 423 MFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 482

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+    L   M   G+ PD  T + L+ G C+  +L++A  L   +    +  + V +  
Sbjct: 483 LNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 542

Query: 240 LIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNG 270
           +I G CK  ++D A D+                              +A  +  +M  NG
Sbjct: 543 IIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNG 602

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             PD  TY  L+ G  K G+++ ++++  EM   G   D  AFT
Sbjct: 603 HEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD--AFT 644


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 220/454 (48%), Gaps = 30/454 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPGLVLDA 64
           L+ Y+ +++        S A  LL  ++ K G   S    +S+L     G  +   V  A
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMM-KLGYEPSIVTLSSLLNGYCHGKRISDAV--A 176

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+   V++G+  D I    L+   +    A     L+DRM++                 G
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR----------------G 220

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P++  + V+++ LCK G    A  + ++     + A  V FNT+I+  CK +++D+  
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 280

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M E+ + PN V F  LID  
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+        EA K+ D+M    ++PD  TY  L++GFC    L+ A  + + M+ +
Sbjct: 341 VKEGKF------VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 394

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
               D V +  LI GFC+  +V +   + REM   GL  D  TYT +I     +GD    
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            ++ K+M SDG  P + TY+ L++GLC +G+L+ A  + D M    +  D   Y  ++EG
Sbjct: 455 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            CK G  +D   L    S KG+  +   Y +++S
Sbjct: 515 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS 548



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 201/437 (45%), Gaps = 24/437 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS------------------KKGMGSSAS 44
           +R     ++T++H L  H   S+A  L+  +V                   K+G    A 
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
              + +E        ++ + ++        +DDA+  F+ +     R        LI  +
Sbjct: 246 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
                 +       ++++   +P++  FN L+    KEGK  +A+ ++D+  KR +    
Sbjct: 306 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            ++N+L+NG C    LD+  ++   M      PDV TY+ LI G CK  R++D   L  E
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  RGL  + V +TTLI G   +G      D   A+K+  +M ++G+ PD +TY+ILLDG
Sbjct: 426 MSHRGLVGDTVTYTTLIQGLFHDG------DCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            C  G LE AL++   M K  I+LD   +T +I G C+ GKV +   +   +   G+KP+
Sbjct: 480 LCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 539

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  +I   C     +  + LLK+M+ DG LP   TYN L+    + G    +  L+ 
Sbjct: 540 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIR 599

Query: 405 TMLDLGVVPDDITYNIL 421
            M     V D  T  ++
Sbjct: 600 EMRSCRFVGDASTIGLV 616



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 169/379 (44%), Gaps = 67/379 (17%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA  +F    K     + V FN L++   K K  D    L   M+   +   +YTY+
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
            LIN  C+ +++  A  LL +M + G  P+ V  ++L++G+C   RI  A          
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD---- 290
                                  EA  +VD M   G  P+ +TY ++++G CK GD    
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 291 -------------------------------LESALDIRKEMIKRGIELDNVAFTALISG 319
                                          ++ AL++ KEM  +GI  + V +++LIS 
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C  G+  +A ++L +M++  + P+  T+  +ID F K G      +L  +M      P 
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-- 437
           + TYN+L+NG C H +L  A  + + M+     PD +TYN L++G CK    ED  +L  
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 424

Query: 438 -QSEKGLVSDYACYTSLVS 455
             S +GLV D   YT+L+ 
Sbjct: 425 EMSHRGLVGDTVTYTTLIQ 443



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG  DM  D  +A  +   M  +   P  + +  LL    K    +  + + ++M +  
Sbjct: 58  RNGLHDMKLD--DAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLE 115

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I      +  LI+ FCR  ++  A  +L +M+K+G +P   T + +++ +C         
Sbjct: 116 IVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 175

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+ +M   G+ P   T+  L++GL  H +   A  L+D M+  G  P+ +TY +++ G 
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235

Query: 426 CKHGNPE----DFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           CK G+ +      +K+++ K + +D   + +++    KYR 
Sbjct: 236 CKRGDTDLALNLLNKMEAAK-IEADVVIFNTIIDSLCKYRH 275


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 192/358 (53%), Gaps = 7/358 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I  + +T   T  L    E+ + G +P V  + +++ +LC+ GK+ +A  +F +  +RG
Sbjct: 16  IISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERG 75

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             A  V++N LING CK +N++  ++L   M   G  PD  TY+ +++GLC+  ++ +A+
Sbjct: 76  CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAK 135

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
                M  RG +P+ V +  L+D   K G++  A  + +   + D      + PD ITY 
Sbjct: 136 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADR----KVAPDLITYN 191

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DGFC+    + A+ + K++I +G   D V + +++ G  R   + EAE M ++M+  
Sbjct: 192 TLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDS 251

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P+ ATY++V+   C+ G+      L +EM      P V   NA+++ LCK  ++ +A
Sbjct: 252 GCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDA 311

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKS 457
           + +L+ M  +G VPD +TYNILL+G CK       DK       + D  C   +VS S
Sbjct: 312 HKVLEEMSKIGAVPDVVTYNILLDGLCKTNL---VDKAHELFSTMVDNGCAPDIVSYS 366



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 151/278 (54%), Gaps = 8/278 (2%)

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             ++G     V+++T+I+G CK   + E   +   M   G+ PDV TY+ +++ LC+  +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +D+A+ L H+M ERG + N V +  LI+G CK+  I+       A K+++EM + G  PD
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIE------RAYKLLEEMASKGYEPD 114

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ITY  +L G C+ G +  A      M  RG   D VA+  L+    + GKV EA  + +
Sbjct: 115 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFK 174

Query: 335 --EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             +M    + PD  TY  +ID FC+   T    +L K++ + G++P   TYN+++ GL +
Sbjct: 175 TMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLAR 234

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
              +  A  +   M+D G  P+  TY+I+L GHC+ GN
Sbjct: 235 KSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGN 272



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 161/303 (53%), Gaps = 8/303 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  Y E+ +  +SP V + N ++  LCK  K+ DA  V +E  K G     V++N L++G
Sbjct: 277 LELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDG 336

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK   +D+   L S M  +G  PD+ +YS ++NGLCK N++ DA +L   M ER L P+
Sbjct: 337 LCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPD 396

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F  L+DG CK G++D      EA+ ++D M  + + PD +T T L+ G C++   + 
Sbjct: 397 VVTFNILMDGLCKAGKLD------EAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDE 450

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG--LKPDDATYTMV 351
           A+ + + M+++G   D +    +++G CR GK+ +A    + M+K      PD  TYT +
Sbjct: 451 AVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTL 510

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++   + G         ++M   G  P    YN LMNGL K G+   A+ L   M + G 
Sbjct: 511 VNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGF 570

Query: 412 VPD 414
           + D
Sbjct: 571 LSD 573



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 185/376 (49%), Gaps = 36/376 (9%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD--EFGKRGLHATAVSFNTLING 173
           F+  +   GYSP V  +N L+  L KEGK+ +A  +F   +   R +    +++NTLI+G
Sbjct: 137 FFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDG 196

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+ +  DE  +L   +   G  PD  TY++++ GL +++ +D+AE +  +M + G  PN
Sbjct: 197 FCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPN 256

Query: 234 DVIFTTLIDGHCK--------------------------NGRIDM---AGDMKEARKIVD 264
              ++ ++ GHC+                          N  IDM   A  + +A K+++
Sbjct: 257 GATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLE 316

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   G  PD +TY ILLDG CK   ++ A ++   M+  G   D V+++ +++G C+  
Sbjct: 317 EMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTN 376

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           KV +A  +   M++  L PD  T+ +++D  CK G       LL  M     LP   T  
Sbjct: 377 KVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCT 436

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSE 440
            LM+GLC+  +   A  L   M++ G V D + +NI+L G C+ G        F  +   
Sbjct: 437 TLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKS 496

Query: 441 KGLVS-DYACYTSLVS 455
            G  S D   YT+LV+
Sbjct: 497 DGEFSPDVVTYTTLVN 512



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 168/336 (50%), Gaps = 11/336 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + +++D G +P+   +++++   C+ G +     +++E  ++      +  N +I+  C
Sbjct: 244 MFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLC 303

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KAK +D+  ++   M   G  PDV TY+ L++GLCK N +D A  L   M + G  P+ V
Sbjct: 304 KAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIV 363

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            ++ +++G CK  ++       +AR + D M    L PD +T+ IL+DG CK G L+ A 
Sbjct: 364 SYSVVLNGLCKTNKV------HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 417

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           D+   M +  +  D V  T L+ G CR  +  EA R+ + M++ G   D   + +V+   
Sbjct: 418 DLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGL 477

Query: 356 CKNGDTKTGFRLLKEM-RSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
           C+ G         K M +SDG   P V TY  L+N L + G++  A      M   G  P
Sbjct: 478 CREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAP 537

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSD 446
           D + YN L+ G  K G     D+L     EKG +SD
Sbjct: 538 DYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 130/235 (55%), Gaps = 11/235 (4%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M E+G  P+ V ++T+I G CK G++       EA ++V+EM   G+NPD  TYTI++D 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKV------TEALEMVEEMTEKGVNPDVATYTIIVDR 54

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            C+ G ++ A ++  +MI+RG   + VA+ ALI+G C+   +  A ++L EM   G +PD
Sbjct: 55  LCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPD 114

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           + TY  ++   C+ G      +    M S G+ P V  YN L++ L K G++  A  L  
Sbjct: 115 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFK 174

Query: 405 T--MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           T  M D  V PD ITYN L++G C+    ++  KL  +   KG + D   Y S++
Sbjct: 175 TMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL 229



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 133/245 (54%), Gaps = 4/245 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D + +TNL       +  ++D G +P +  ++V+++ LCK  K+ DA+++FD   +R 
Sbjct: 333 LLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK 392

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V+FN L++G CKA  LDE   L  VM    + PD  T + L++GLC++ R D+A 
Sbjct: 393 LVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAV 452

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M E+G   + +    ++ G C+ G++  A    ++    D       +PD +TYT
Sbjct: 453 RLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSD----GEFSPDVVTYT 508

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++   + G ++ A+D  ++M   G   D VA+  L++G  + G+ ++A+R+ + M + 
Sbjct: 509 TLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEK 568

Query: 340 GLKPD 344
           G   D
Sbjct: 569 GFLSD 573



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIV 68
           +STMV    A  + S +  L  L  + K +  +  LF  ++E +   +P +V  + LM  
Sbjct: 350 FSTMVDNGCAPDIVSYSVVLNGLCKTNK-VHDARVLFDRMIERK--LVPDVVTFNILMDG 406

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G LD+A     ++ +H        C  L+  + R       +  +  +++ G    
Sbjct: 407 LCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVAD 466

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--LHATAVSFNTLINGHCKAKNLDEGFRL 186
           V   N+++  LC+EGK+  A + F    K         V++ TL+N   +A  +D+    
Sbjct: 467 VLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDY 526

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              M GSG  PD   Y+ L+NGL K+ R   A+ L   M E+G 
Sbjct: 527 FQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGF 570



 Score = 38.9 bits (89), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 36/79 (45%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D  +SP V  +  L++ L + G++  A   F +    G     V++NTL+NG  K     
Sbjct: 497 DGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHI 556

Query: 182 EGFRLKSVMEGSGMRPDVY 200
           +  RL   M+  G   D +
Sbjct: 557 QADRLTQAMKEKGFLSDCF 575


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 202/389 (51%), Gaps = 13/389 (3%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-YGYSPSVYV 131
           G L  A+  F +L         + C  L++ + RT     T   + E+ D    +P+ Y 
Sbjct: 172 GSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYS 231

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLH--ATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +  ++  LCK GK+ D   +  +    GL   A AV +N L++  CK+  +DE  RLK  
Sbjct: 232 YTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGR 291

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ME S + P + T+  LINGL + +R  +   LL EM   G+TPN+VI   LID HC+ G 
Sbjct: 292 MEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGH 351

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   EA ++ DEM +  +    +TY ++    CKEG++E A  I +EM+  G+ + 
Sbjct: 352 F------TEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIH 405

Query: 310 NVAFTALISGFC-RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +  F ++++G   R G++    R++ EM+K G+KP+DA  T      C+    +    + 
Sbjct: 406 SGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIW 465

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M   G    + T NAL++GLC+   +K A  +L TM++ G+  D+ITYNI+++G CK 
Sbjct: 466 LKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKD 525

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
              E+  KL+ +   KG   D   + S++
Sbjct: 526 SKIEEALKLRDDMIRKGFKPDAYMFNSII 554



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+  +      +LC+  + ++A  ++ +  ++GL     + N LI+G C+ K
Sbjct: 432 EMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGK 491

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+     +   M   GM  D  TY+ +I G CK++++++A  L  +M  +G  P+  +F 
Sbjct: 492 NMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFN 551

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++I  +C  G+      M+EA  ++ +M   G+ PD ++Y  ++DG+CK  D++ A +  
Sbjct: 552 SIIHAYCDLGK------MEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYL 605

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E++  G++ + V + ALI G+ R G +  A  +L  M  +G++P + TY  ++   C  
Sbjct: 606 NELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHA 665

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       + ++ R +     V  Y  ++ GLCK G++  A    + M    + P+ ITY
Sbjct: 666 GLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITY 725

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
             L+  +CK GN E+  KL  E    G+V D   Y +LV+  S+
Sbjct: 726 TTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQ 769



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 170/334 (50%), Gaps = 7/334 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  LID   R    T  +  + E++      +   +N++   LCKEG+++ A+ + +E  
Sbjct: 339 CNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEML 398

Query: 157 KRGLHATAVSFNTLINGHC-KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             G+   +  FN+++ G   +   L+   RL S M   GM+P+    +A    LC+  R 
Sbjct: 399 STGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRH 458

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +A  +  +M E+GL  N      LI G C+        +MK A +++  M   G+  D 
Sbjct: 459 QEAVGIWLKMLEKGLCINIATSNALIHGLCE------GKNMKGATEVLRTMVNKGMELDN 512

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ITY I++ G CK+  +E AL +R +MI++G + D   F ++I  +C  GK+ EA  +L +
Sbjct: 513 ITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQ 572

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   G++PD  +Y  +ID +CK  D +     L E+ + G  P    YNAL+ G  ++G 
Sbjct: 573 MKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGN 632

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +  A  +LDTM  +G+ P ++TY  L+   C  G
Sbjct: 633 ISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAG 666



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 194/387 (50%), Gaps = 11/387 (2%)

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
           + A + ++ G     L++DAL       G +D+AI+    + +            LI+ +
Sbjct: 256 IHAGLQQSAGAVPYNLLMDAL----CKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGL 311

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            R++          E+   G +P+  + N L+   C++G   +A  +FDE   + + +TA
Sbjct: 312 KRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTA 371

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN-RLDDAELLLH 223
           V++N +    CK   ++   R+   M  +GM      +++++ GL +   RL+    L+ 
Sbjct: 372 VTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLIS 431

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM +RG+ PND + T      C+  R       +EA  I  +M   GL  +  T   L+ 
Sbjct: 432 EMVKRGMKPNDALMTACTKQLCQGRR------HQEAVGIWLKMLEKGLCINIATSNALIH 485

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G C+  +++ A ++ + M+ +G+ELDN+ +  +I G C+  K+ EA ++  +M++ G KP
Sbjct: 486 GLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKP 545

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D   +  +I  +C  G  +    LL +M+ +G  P V +Y  +++G CK   ++ AN  L
Sbjct: 546 DAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYL 605

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGN 430
           + ++  G+ P+ + YN L+ G+ ++GN
Sbjct: 606 NELMACGLKPNAVIYNALIGGYGRNGN 632



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 142/269 (52%), Gaps = 6/269 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +N+++   CK+ KI++A  + D+  ++G    A  FN++I+ +C    ++E   L   M
Sbjct: 514 TYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQM 573

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +  G++PDV +Y  +I+G CK   +  A   L+E+   GL PN VI+  LI G+ +NG I
Sbjct: 574 KIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNI 633

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
                   A  ++D M + G+ P  +TY  L+   C  G ++ A  + ++  K  IE+  
Sbjct: 634 S------GAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGV 687

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +T +I G C+ GK+ EA     EM    + P+  TYT ++  +CK+G+ +   +L  E
Sbjct: 688 VGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDE 747

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           M S G +P   +YN L+ G  +   L  A
Sbjct: 748 MVSSGIVPDNVSYNTLVTGFSQVDSLDKA 776



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 2/146 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +  LMH +C  G + +A+ +F++  K  +    V +  +I G CK   +DE 
Sbjct: 647 GIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEA 706

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M    + P+  TY+ L+   CK    ++A  L  EM   G+ P++V + TL+ G
Sbjct: 707 MNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTG 766

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTN 269
             +   +D A  +++A +I   M  N
Sbjct: 767 FSQVDSLDKA--IEKAAEISSIMTQN 790



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 59/135 (43%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +E+ G     +   +LM      G +D+A   F   RK+   +   G   +I  + +   
Sbjct: 643 MESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGK 702

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
               + ++ E+      P+   +  LM+  CK G  ++A  +FDE    G+    VS+NT
Sbjct: 703 MDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNT 762

Query: 170 LINGHCKAKNLDEGF 184
           L+ G  +  +LD+  
Sbjct: 763 LVTGFSQVDSLDKAI 777


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 178/330 (53%), Gaps = 8/330 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +       +G  LE+   G  P+      LM  LCK+G++ +A  + +   K+G
Sbjct: 39  LINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKG 98

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             A  V + TLI+G C   NLD G  L   M G G+  +V TYS L++GLC+  +  +A 
Sbjct: 99  FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEAN 158

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L+ M E G+ P+ V +T LIDG CK+GR   A D      +++ M   G  P  +TY 
Sbjct: 159 TVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMD------LLNLMVEKGEEPSNVTYN 212

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML-- 337
           +LL G CKEG +  A  I + MI++G + D V +  L+ G C  GKV EA ++   M   
Sbjct: 213 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 272

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           +  L+P+  T+ M+I   CK G      ++ ++M   G    + TYN L+ G  K G++K
Sbjct: 273 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 332

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            A  L   +LDLG VP+  TY+IL++G CK
Sbjct: 333 EAMELWKQVLDLGFVPNSFTYSILIDGFCK 362



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 188/364 (51%), Gaps = 34/364 (9%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            N+++  LC+ G + +A  +  E G++ +    VS+NTLING CKAK L E   L   ME
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            +G  P+  T + L++GLCK+ R+D+A  LL  M ++G   + V++ TLI G C NG +D
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 252 MA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
                                          G  KEA  +++ M  +G++PD +TYT L+
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK+G    A+D+   M+++G E  NV +  L+SG C+ G V++A ++LR M++ G K
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK 240

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--PAVETYNALMNGLCKHGQLKNAN 400
            D  TY  ++   C  G      +L   M  + +   P V T+N L+ GLCK G+L  A 
Sbjct: 241 ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAV 300

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKS 457
            +   M+  G   + +TYN+LL G  K G  ++  +L  +    G V +   Y+ L+   
Sbjct: 301 KIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGF 360

Query: 458 SKYR 461
            K R
Sbjct: 361 CKMR 364



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G S +V  ++ L+H LC+ G+ K+A  V +   + G+H   V++  LI+G CK  
Sbjct: 128 EMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDG 187

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                  L ++M   G  P   TY+ L++GLCKE  + DA  +L  M E+G   + V + 
Sbjct: 188 RATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYN 247

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLNPDKITYTILLDGFCKEGDLESALD 296
           TL+ G C  G++D      EA K+ + M    N L P+  T+ +L+ G CKEG L  A+ 
Sbjct: 248 TLMKGLCDKGKVD------EALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVK 301

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I ++M+K+G   + V +  L+ G  + GK+ EA  + +++L +G  P+  TY+++ID FC
Sbjct: 302 IHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 361

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K         L  EMR+ G  PA+  YN LM  LCK G L+ A  L   M +    PD I
Sbjct: 362 KMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDII 421

Query: 417 TYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVSKSSK 459
           ++N +++G  K G+ +   +LQ    E GL  D   +++L+++ SK
Sbjct: 422 SFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSK 467



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 182/361 (50%), Gaps = 11/361 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +    T  +     +++ G  PS   +NVL+  LCKEG + DA  +     ++G
Sbjct: 179 LIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 238

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVM--EGSGMRPDVYTYSALINGLCKENRLDD 217
             A  V++NTL+ G C    +DE  +L + M    + + P+V+T++ LI GLCKE RL  
Sbjct: 239 KKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTK 298

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +  +M ++G   N V +  L+ G  K G+I      KEA ++  ++   G  P+  T
Sbjct: 299 AVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKI------KEAMELWKQVLDLGFVPNSFT 352

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y+IL+DGFCK   L  A  +  EM   G+      +  L++  C+ G + +A+ + +EM 
Sbjct: 353 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG 412

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
               +PD  ++  +ID   K GD +    L  +M   G  P   T++ L+N L K G+L 
Sbjct: 413 NANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELD 472

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            A   L+ M+  G  PD + Y+ LL+G    G+  +   L    + KG V D    ++++
Sbjct: 473 EAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTIL 532

Query: 455 S 455
           +
Sbjct: 533 T 533



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 190/423 (44%), Gaps = 11/423 (2%)

Query: 11  STMVHFLVAHKMHSQARDLLHLI--VSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +T+++ +  H +H        LI  + K G  + A    +++  +G     +  + L+  
Sbjct: 158 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG--YS 126
               G + DA +  R++ +   +        L+  +         L  +  + D      
Sbjct: 218 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 277

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ FN+L+  LCKEG++  A  +  +  K+G     V++N L+ G  KA  + E   L
Sbjct: 278 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +   G  P+ +TYS LI+G CK   L+ A+ L  EM   GL P    + TL+   CK
Sbjct: 338 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 397

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G ++      +A+ +  EM      PD I++  ++DG  K GD +   +++ +M++ G+
Sbjct: 398 EGSLE------QAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGL 451

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D + F+ LI+   + G++ EA+  L  M+  G  PD   Y  ++      GDT     
Sbjct: 452 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 511

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN-ILLEGH 425
           LL +M + G +   +  + ++  LC   Q  +   LL T          I+ N +L++ H
Sbjct: 512 LLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELLMQLH 571

Query: 426 CKH 428
             H
Sbjct: 572 QSH 574


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 203/406 (50%), Gaps = 34/406 (8%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGF 116
           P   L  L+I    +G LD+A+  FR L    + +PA   C  ++D +++          
Sbjct: 110 PAPALGVLVIALSQMGLLDEALYVFRRL----WTLPALPACNAVLDGLVKARRSRCAWEL 165

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+L  G  PSV  +N L++    +G +  AQ ++D+   R +    +++ ++I   C+
Sbjct: 166 FDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCE 225

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + +  RL   M+ +GMRP+ YTY+ L++G C+ + ++ A +L  E+   GL PN V+
Sbjct: 226 EGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVV 285

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           FTTLIDG CK  R   A                             GD +EA  +  EM 
Sbjct: 286 FTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMT 345

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GL PD+ T +I++ G C  G ++ A    + + + G+ L+  A+ ALI  +CR G + 
Sbjct: 346 RLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLE 405

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA      M +VG++P+  +Y+ +ID   K G  +    +  EM + G  P V TY AL+
Sbjct: 406 EALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALI 465

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +G  K+G +  A      M++ G+ P+ IT ++L++G C+    +D
Sbjct: 466 HGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQD 511



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 170/330 (51%), Gaps = 14/330 (4%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNLDEGFRLKSVMEG 192
           VL+  L + G + +A  VF    +R     A+ + N +++G  KA+     + L   M  
Sbjct: 116 VLVIALSQMGLLDEALYVF----RRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLR 171

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            GM P V TY+ LIN    +  +  A+ +  +M  R + PN + +T++I   C+ G I  
Sbjct: 172 RGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCI-- 229

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            GD   A ++ D M   G+ P++ TY +L+ G C+  D+ SA  + +E++  G+  + V 
Sbjct: 230 -GD---AERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVV 285

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           FT LI GFC+  +  EA+ M R+M + G+ P    Y  ++D   ++GD +    L +EM 
Sbjct: 286 FTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMT 345

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P   T + ++ GLC  GQ++ A   L+ + + GV  +   YN L++ +C++GN E
Sbjct: 346 RLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLE 405

Query: 433 DFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           +        +E G+  +   Y+SL+   SK
Sbjct: 406 EALATCTRMTEVGVEPNVVSYSSLIDGHSK 435



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 58/350 (16%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+L+ G  P+  VF  L+   CK  +  +A+ +F +  + G+  T   +N+L++G  
Sbjct: 270 LYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAF 329

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           ++ +  E   L   M   G+ PD +T S ++ GLC   ++  A   L  + E G+  N  
Sbjct: 330 RSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAA 389

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  LID +C+NG      +++EA      M   G+ P+ ++Y+ L+DG  K G ++ A+
Sbjct: 390 AYNALIDEYCRNG------NLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAM 443

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            I  EM+ +GIE + V +TALI G  + G +  A R  +EM++ G+ P+  T ++++D  
Sbjct: 444 AIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGL 503

Query: 356 CKNGDTKTGFRLLKE--------------------------------------------- 370
           C+    +   R + E                                             
Sbjct: 504 CRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYE 563

Query: 371 -------MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
                  MR  G +    TY  L+ G C  G + NA ML   M+ +GV P
Sbjct: 564 AGKLFSYMRKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP 613



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 148/336 (44%), Gaps = 47/336 (13%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           ++T++      K  S+A+D+   +  + G+  +  ++ S+++  G    G   +AL +  
Sbjct: 286 FTTLIDGFCKAKRFSEAKDMFRDM-PRFGVAPTVPVYNSLMD--GAFRSGDAQEALSLYQ 342

Query: 70  --VDLGFLDDAIQCFRLLRK----HYFRIPAR---GCR------------CLIDRMMRTN 108
               LG   D   C  ++R        ++ AR   G R             LID   R  
Sbjct: 343 EMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNG 402

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
                L     + + G  P+V  ++ L+    K GK++ A  ++ E   +G+    V++ 
Sbjct: 403 NLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYT 462

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-- 226
            LI+GH K   +D  FR    M  +G+ P+  T S L++GLC+ENR+ DA   + E    
Sbjct: 463 ALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGI 522

Query: 227 ---------------ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                          E  L PN  I+ TLI G      + + G   EA K+   M  +G+
Sbjct: 523 KYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYG------LYLDGQHYEAGKLFSYMRKSGM 576

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
             D  TYT+L+ G C  G + +A+ +  +M+K G++
Sbjct: 577 ISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVK 612


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 187/364 (51%), Gaps = 30/364 (8%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  ++  +    L    + ++ +++D G+ P++  F  L+  LCK+G IK A  + +E  
Sbjct: 278 CTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMV 337

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRL 215
           + G      +   LI+G CK    ++ FRL   ++     +P+V+TY+++I G CKE++L
Sbjct: 338 RNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKL 397

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM------------------- 256
           + AE+L   M E+GL PN   +TTLI+GHCK G  D A ++                   
Sbjct: 398 NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAV 457

Query: 257 ----------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                      EA +++++  + GL  D +TYTIL+   CK+ D++ AL     M K G 
Sbjct: 458 IDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGF 517

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E D      LI+ FCR  K+ E+ER+ + ++ +GL P   TYT +I  +CK GD     +
Sbjct: 518 EADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALK 577

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
               M+  G +P   TY +L++GLCK   +  A  L + M+D G+ P ++T   L   +C
Sbjct: 578 YFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYC 637

Query: 427 KHGN 430
           K  +
Sbjct: 638 KRND 641



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 172/334 (51%), Gaps = 7/334 (2%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           RC++            +G  +++ + G SPS    N ++    + G I  A+ VFDE   
Sbjct: 174 RCMLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSV 233

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           RG+   + SF  ++ G  +   + E  R  S M   G  PD  T + +++ LC+   ++ 
Sbjct: 234 RGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNR 293

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A     +M + G  PN + FT+LIDG CK G I      K+A ++++EM  NG  P+  T
Sbjct: 294 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSI------KQAFEMLEEMVRNGWKPNVYT 347

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREM 336
           +T L+DG CK G  E A  +  ++++  I   NV  +T++I G+C+  K+  AE +   M
Sbjct: 348 HTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRM 407

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + GL P+  TYT +I+  CK G+    + L+  M  +G  P + TYNA+++ LCK  + 
Sbjct: 408 KEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRA 467

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             A  LL+     G+  D +TY IL++  CK  +
Sbjct: 468 PEAYELLNKAFSCGLEADGVTYTILIQEQCKQSD 501



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 32/322 (9%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y P+V+ +  ++   CKE K+  A+M+F    ++GL     ++ TLINGHCKA N D  +
Sbjct: 377 YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAY 436

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L ++M+  G RP++YTY+A+I+ LCK++R  +A  LL++    GL  + V +T LI   
Sbjct: 437 ELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQ 496

Query: 245 CKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDK 275
           CK   I  A                               MKE+ ++   + + GL P K
Sbjct: 497 CKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTK 556

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TYT ++ G+CKEGD + AL     M + G   D+  + +LISG C+   V EA ++   
Sbjct: 557 ETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEA 616

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M+  GL P + T   +   +CK  D+ +   +L+ +  D  L  + T   L+  LC   +
Sbjct: 617 MIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPL--DKKL-WIRTVRTLVRKLCSEKK 673

Query: 396 LKNANMLLDTMLDLGVVPDDIT 417
           +  A +    +L+     D +T
Sbjct: 674 VGVAALFFQKLLEKDSSADRVT 695



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 127/269 (47%), Gaps = 45/269 (16%)

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           RL++A  ++ +M  +GL+P+ +    +++   ++G ID A +      + DEM   G+ P
Sbjct: 185 RLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAEN------VFDEMSVRGVCP 238

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D  ++ +++ G  ++G ++ A      MI+RG   DN   T ++S  C  G V  A    
Sbjct: 239 DSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYF 298

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R+M+ +G KP+   +T +ID  CK G  K  F +L+EM  +G  P V T+ AL++GLCK 
Sbjct: 299 RKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKR 358

Query: 394 G------------------------------------QLKNANMLLDTMLDLGVVPDDIT 417
           G                                    +L  A ML   M + G+ P+  T
Sbjct: 359 GWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 418

Query: 418 YNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
           Y  L+ GHCK GN   FD+      L+ D
Sbjct: 419 YTTLINGHCKAGN---FDRAYELMNLMDD 444



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 4/205 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G + EA  +V +M   GL+P  IT   +L+   + G ++ A ++  EM  RG+  D+ +F
Sbjct: 184 GRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSF 243

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G  R GK+ EA+R L  M++ G  PD+AT T+++   C+NG         ++M  
Sbjct: 244 KLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMID 303

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P +  + +L++GLCK G +K A  +L+ M+  G  P+  T+  L++G CK G  E 
Sbjct: 304 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEK 363

Query: 434 ----FDKLQSEKGLVSDYACYTSLV 454
               F KL        +   YTS++
Sbjct: 364 AFRLFLKLVRSDIYKPNVHTYTSMI 388



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P+   +  ++   CKEG    A   F    + G    + ++ +LI+G CK   
Sbjct: 547 VVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 606

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +DE  +L   M   G+ P   T   L    CK N    A ++L  + ++ L    V   T
Sbjct: 607 VDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPL-DKKLWIRTV--RT 663

Query: 240 LIDGHCKNGRIDMAG 254
           L+   C   ++ +A 
Sbjct: 664 LVRKLCSEKKVGVAA 678


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 206/399 (51%), Gaps = 28/399 (7%)

Query: 50  LETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCF-RLLRKHY------FRIPARGCRCLI 101
           +E RG   P LV  + L+  +  LG +  A   F ++L+  Y      F    +G  CL 
Sbjct: 111 MEFRGIK-PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGL-CLK 168

Query: 102 DRMMRTNL---PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++ +  L     V LGF+ + + YG          L+H LCK G+ + A  +       
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYG---------TLIHGLCKVGETRAALDLLQRVDGN 219

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +    V +NT+I+  CK K ++E F L S M   G+ PDV TYSALI+G C   +L+DA
Sbjct: 220 LVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDA 279

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L ++M    + P+   F  L++  CK+G+      MKE + + D M   G+ P+ +TY
Sbjct: 280 IDLFNKMILENIKPDVYTFNILVNAFCKDGK------MKEGKTVFDMMMKQGIKPNFVTY 333

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+DG+C   ++  A  I   M + G+  D  +++ +I+GFC+  K  EA  + +EM +
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
             + PD  TY+ +ID   K+G      +L+ +M   G  P + TYN++++ LCK  Q+  
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDK 453

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           A  LL  + D G+ P+  TY+IL++G C+ G  ED  K+
Sbjct: 454 AIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKV 492



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 162/291 (55%), Gaps = 6/291 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P VY FN+L++  CK+GK+K+ + VFD   K+G+    V++N+L++G+C  K +++   +
Sbjct: 293 PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSI 352

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G+ PD+ +YS +ING CK  + D+A  L  EM  + + P+ V +++LIDG  K
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +GRI  A       ++VD+M   G+ P   TY  +LD  CK   ++ A+ +  ++  +GI
Sbjct: 413 SGRISYA------LQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGI 466

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + +   ++ LI G C+ GK+ +A ++   +L  G   +  TYT++I  FC  G       
Sbjct: 467 QPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALA 526

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           LL +M  +G +P  +TY  ++  L K  +   A  LL  M+  GV P  I 
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIA 577



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 191/402 (47%), Gaps = 21/402 (5%)

Query: 71  DLGFLDDAIQCFRLLRKHYFR-IPARGCRCLIDRMMRTNLPTV---------TLGFYLEI 120
           D  F+    Q F+ L+  +F  IP    +  I+ +  ++  T           +  +  +
Sbjct: 19  DSHFVPKKFQSFQFLKNTHFNFIPYSSSK--INFISYSSTSTTFHSNNDVDDAVSLFNRL 76

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L    +P  + FN ++  L K         +  +   RG+    V+ N LIN  C+   +
Sbjct: 77  LRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLI 136

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
              F + + +   G  PD  T++ LI GLC + ++  A L   ++   G   + + + TL
Sbjct: 137 PFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTL 196

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G CK       G+ + A  ++  +  N + P+ + Y  ++D  CK   +  A D+  E
Sbjct: 197 IHGLCK------VGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSE 250

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           MI +GI  D V ++ALISGFC  GK+ +A  +  +M+   +KPD  T+ ++++ FCK+G 
Sbjct: 251 MISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            K G  +   M   G  P   TYN+LM+G C   ++  A  + +TM   GV PD  +Y+I
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 421 LLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           ++ G CK    ++   L  E   K ++ D   Y+SL+   SK
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 165/323 (51%), Gaps = 6/323 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID M +  L       + E++  G SP V  ++ L+   C  GK+ DA  +F++     
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN 290

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     +FN L+N  CK   + EG  +  +M   G++P+  TY++L++G C    ++ A+
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M + G+ P+   ++ +I+G CK  + D      EA  +  EM    + PD +TY+
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD------EAMNLFKEMHRKNIIPDVVTYS 404

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG  K G +  AL +  +M  RG+      + +++   C+  +V +A  +L ++   
Sbjct: 405 SLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDK 464

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P+  TY+++I   C++G  +   ++ + +   GH   V+TY  ++ G C  G    A
Sbjct: 465 GIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEA 524

Query: 400 NMLLDTMLDLGVVPDDITYNILL 422
             LL  M D G +PD  TY I++
Sbjct: 525 LALLSKMEDNGCIPDAKTYEIII 547



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 73/141 (51%)

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           R    ++D + + +     +    ++ D G  P++Y +++L+  LC+ GK++DA+ VF+ 
Sbjct: 436 RTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEG 495

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
              +G +    ++  +I G C     +E   L S ME +G  PD  TY  +I  L K++ 
Sbjct: 496 LLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDE 555

Query: 215 LDDAELLLHEMCERGLTPNDV 235
            D AE LL EM  RG+ P  +
Sbjct: 556 NDMAEKLLREMIARGVRPRQI 576


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 195/360 (54%), Gaps = 32/360 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PSV+++NVL+  LCK  ++ DA+ +FDE   R L  + +++NTLI+G+CKA N ++ F++
Sbjct: 212 PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKV 271

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M+   + P + T++ L+ GL K   ++DAE +L EM + G  P+   F+ L DG+  
Sbjct: 272 RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSS 331

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           N + + A                             G +++A +I+      GL P+++ 
Sbjct: 332 NEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVI 391

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  ++DG+C++GDL  A    + M K+G++ D++A+  LI  FC  G++  AE+ + +M 
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G+ P   TY ++I  + +  +    F +LKEM  +G +P V +Y  L+N LCK  +L 
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLL 511

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
            A ++   M D GV P    YN+L++G C  G  ED   F K   +KG+  +   Y +L+
Sbjct: 512 EAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLI 571



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 167/333 (50%), Gaps = 29/333 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  FN L+  L K G ++DA+ V  E    G    A +F+ L +G+   +  +    +
Sbjct: 282 PSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGV 341

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                 SG++ + YT S L+N LCKE +++ AE +L     +GL PN+VI+ T+IDG+C+
Sbjct: 342 YETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCR 401

Query: 247 NG-----------------------------RIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
            G                             R    G+M+ A K V++M   G++P   T
Sbjct: 402 KGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVET 461

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y IL+ G+ ++ + +   DI KEM   G   + V++  LI+  C+G K++EA+ + R+M 
Sbjct: 462 YNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDME 521

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G+ P    Y M+ID  C  G  +  FR  KEM   G    + TYN L++GL   G+L 
Sbjct: 522 DRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLS 581

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            A  LL  +   G+ PD  TYN L+ G+   GN
Sbjct: 582 EAEDLLLEISRKGLKPDVFTYNSLISGYGFAGN 614



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 205/431 (47%), Gaps = 39/431 (9%)

Query: 58  PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P L+  + L+      G ++DA    + ++   F   A     L D           LG 
Sbjct: 282 PSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGV 341

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y   +D G   + Y  ++L++ LCKEGKI+ A+ +      +GL    V +NT+I+G+C+
Sbjct: 342 YETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCR 401

Query: 177 AKNLDEGFRLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
             +L  G R+K   ME  GM+PD   Y+ LI   C+   +++AE  +++M  +G++P+  
Sbjct: 402 KGDL-VGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVE 460

Query: 236 IFTTLIDGHCKNGRIDMAGD-----------------------------MKEARKIVDEM 266
            +  LI G+ +    D   D                             + EA+ +  +M
Sbjct: 461 TYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDM 520

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G++P    Y +L+DG C +G +E A    KEM+K+GIEL+ V +  LI G    GK+
Sbjct: 521 EDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKL 580

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EAE +L E+ + GLKPD  TY  +I  +   G+ +    L +EM+  G  P ++TY+ L
Sbjct: 581 SEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLL 640

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGL 443
           ++ LC    ++    L   M    + PD + YN +L  +  HG+ E    LQ    EK +
Sbjct: 641 IS-LCTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSI 696

Query: 444 VSDYACYTSLV 454
             D   Y SL+
Sbjct: 697 GLDKTTYNSLI 707



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 182/375 (48%), Gaps = 41/375 (10%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P    +N L+ + C+ G++++A+   ++   +G+  +  ++N LI G+ +    D+ 
Sbjct: 419 GMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 478

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F +   ME +G  P+V +Y  LIN LCK ++L +A+++  +M +RG++P   I+  LIDG
Sbjct: 479 FDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDG 538

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C  G+I+      +A +   EM   G+  + +TY  L+DG    G L  A D+  E+ +
Sbjct: 539 CCSKGKIE------DAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISR 592

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID---------- 353
           +G++ D   + +LISG+   G V     +  EM + G+KP   TY ++I           
Sbjct: 593 KGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELT 652

Query: 354 ---------------------CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
                                C+  +GD +  F L K+M          TYN+L+ G  K
Sbjct: 653 ERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLK 712

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK---HGNPEDFDKLQSEKGLVSDYAC 449
            G+L     L+D M    + P+  TYNI+++GHC+   + +   + +   EKG + D   
Sbjct: 713 VGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCI 772

Query: 450 YTSLVSK-SSKYRQK 463
              LVS    ++R K
Sbjct: 773 GNELVSGLKEEWRSK 787



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 179/392 (45%), Gaps = 69/392 (17%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           + +A   F  LR       +     L+D +++T    VT+  +L IL+  + PS +++  
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMY-- 182

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
                   GK   A +   + GK                         G  L + M+   
Sbjct: 183 --------GKAIQAAVKLSDVGK-------------------------GLELFNRMKHDR 209

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID--- 251
           + P V+ Y+ LI+GLCK  R++DAE L  EM  R L P+ + + TLIDG+CK G  +   
Sbjct: 210 IYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSF 269

Query: 252 --------------------------MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
                                      AG +++A  ++ EM   G  PD  T++IL DG+
Sbjct: 270 KVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGY 329

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML-REMLKVGLKPD 344
                 E+AL + +  +  G++++    + L++  C+ GK+ +AE +L REM K GL P+
Sbjct: 330 SSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK-GLVPN 388

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           +  Y  +ID +C+ GD       ++ M   G  P    YN L+   C+ G+++NA   ++
Sbjct: 389 EVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVN 448

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            M   GV P   TYNIL+ G   +G   +FDK
Sbjct: 449 KMKLKGVSPSVETYNILIGG---YGRKYEFDK 477



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 7/298 (2%)

Query: 134 VLMHKLCKEGK-IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           +L+  L  E K I +A  +F      G++ ++ S   L++   K K       +   +  
Sbjct: 113 LLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 172

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           S  RP  + Y   I    K + +     L + M    + P+  I+  LIDG CK  R   
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKR--- 229

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              M +A ++ DEM    L P  ITY  L+DG+CK G+ E +  +R+ M    IE   + 
Sbjct: 230 ---MNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLIT 286

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+ G  + G V +AE +L+EM  +G  PD  T++++ D +  N   +    + +   
Sbjct: 287 FNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAV 346

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             G      T + L+N LCK G+++ A  +L   +  G+VP+++ YN +++G+C+ G+
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGD 404



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 25/313 (7%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G  P+V  +  L++ LCK  K+ +AQ+V  +   RG+      +N LI+G C   
Sbjct: 484 EMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKG 543

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++ FR    M   G+  ++ TY+ LI+GL    +L +AE LL E+  +GL P+   + 
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603

Query: 239 TLIDGHCKNGRIDMAGDMKEARK------------IVDEMCTN-------------GLNP 273
           +LI G+   G +     + E  K            ++  +CT               L P
Sbjct: 604 SLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKP 663

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D + Y  +L  +   GD+E A +++K+MI++ I LD   + +LI G  + GK+ E   ++
Sbjct: 664 DLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLI 723

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EM    ++P+  TY +++   C+  D  + +   +EM+  G L  V   N L++GL + 
Sbjct: 724 DEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEE 783

Query: 394 GQLKNANMLLDTM 406
            + K A +++  M
Sbjct: 784 WRSKEAEIVISEM 796



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 33/250 (13%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+L  G   ++  +N L+  L   GK+ +A+ +  E  ++GL     ++N+LI+G+ 
Sbjct: 551 FSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYG 610

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            A N+     L   M+ SG++P + TY  LI+ LC +  ++  E L  EM    L P+ +
Sbjct: 611 FAGNVQRCIALYEEMKRSGIKPTLKTYHLLIS-LCTKEGIELTERLFGEM---SLKPDLL 666

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
           ++  ++  +  +G ++ A                             G + E R ++DEM
Sbjct: 667 VYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEM 726

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
               + P+  TY I++ G C+  D  SA    +EM ++G  LD      L+SG     + 
Sbjct: 727 NAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRS 786

Query: 327 VEAERMLREM 336
            EAE ++ EM
Sbjct: 787 KEAEIVISEM 796



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +N L+    K GK+ + + + DE   R +   A ++N ++ GHC+ K+    +     M
Sbjct: 702 TYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREM 761

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +  G   DV   + L++GL +E R  +AE+++ EM  R L
Sbjct: 762 QEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGRML 801


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 189/350 (54%), Gaps = 6/350 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D A++    + K+      R    ++     +  P   +GF  ++   G  P V  +N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           LM  LCK G+  +A+ +FD   KRGL     ++ TL+ G+     L E   L  +M  +G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + P+ Y +S LI    K+ ++D A L+  +M ++GL P+ V + T+I   CK+GR++ A 
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA- 428

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            M+   +++DE     L+P  I Y  L+   C     + A ++  EM+ RGI LD + F 
Sbjct: 429 -MRYFEQMIDER----LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ++I   C+ G+V+E+E++   M+++G+KPD  TY+ +ID +C  G      +LL  M S 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           G  P   TYN L+NG CK  ++++A +L   M   GV PD ITYNI+L+G
Sbjct: 544 GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  +++   KEG +  A   + E   RG+    V+++++I   CKA+ +D+   +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  +G+ P+  TY+++++G C   +  +A   L +M   G+ P+ V + +L+D  CK
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NGR        EARK+ D M   GL P+  TY  LL G+  +G L     +   M++ GI
Sbjct: 317 NGRC------TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             ++  F+ LI  + + GKV +A  +  +M + GL PD  TY  VI   CK+G  +   R
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             ++M  +   P    YN+L++ LC   +   A  L+  MLD G+  D I +N +++ HC
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 427 KHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           K G   + +K   L    G+  D   Y++L+
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 175/369 (47%), Gaps = 34/369 (9%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G Y E+LD G  P+V  ++ ++  LCK   +  A  V     K G+     ++N++++G+
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C +    E       M   G+ PDV TY++L++ LCK  R  +A  +   M +RGL P  
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 235 VIFTTLIDGHCKNGR-IDM----------------------------AGDMKEARKIVDE 265
             + TL+ G+   G  ++M                             G + +A  +  +
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GLNPD +TY  ++   CK G +E A+   ++MI   +   N+ + +LI   C   K
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
             +A+ ++ EML  G+  D   +  +ID  CK G      +L   M   G  P + TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           L++G C  G++  A  LL +M+ +G+ PD +TYN L+ G+CK    ED    F +++S  
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES-S 578

Query: 442 GLVSDYACY 450
           G+  D   Y
Sbjct: 579 GVSPDIITY 587



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 171/331 (51%), Gaps = 9/331 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ YVF++L+    K+GK+  A +VF +  ++GL+   V++ T+I   CK+  +++ 
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R    M    + P    Y++LI+ LC  ++ D A+ L+ EM +RG+  + + F ++ID 
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDS 488

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ PD ITY+ L+DG+C  G ++ A  +   M+ 
Sbjct: 489 HCKEGRV------IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS 542

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+C+  ++ +A  + REM   G+ PD  TY +++    +   T  
Sbjct: 543 VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAA 602

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+     A  +   +    +  +  T+NI++ 
Sbjct: 603 AKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 662

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
              K G     +D     S  GLV D   Y+
Sbjct: 663 ALLKVGRNDEAKDLFAALSANGLVPDVRTYS 693



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 13/317 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +     ++  LI   C
Sbjct: 44  ELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTYGILIGSCC 102

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
            A  LD GF     +   G R D   ++ L+ GLC + R  DA +++L  M + G  PN 
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLE 292
             +  L+ G C   R       +EA +++  M  +G +  PD ++YT +++GF KEGDL+
Sbjct: 163 FSYNILLKGLCDENR------SQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLD 216

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A     EM+ RGI  + V ++++I+  C+   + +A  +L  M+K G+ P+  TY  ++
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +C +G  K     LK+M SDG  P V TYN+LM+ LCK+G+   A  + D+M   G+ 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK 336

Query: 413 PDDITYNILLEGHCKHG 429
           P+  TY  LL+G+   G
Sbjct: 337 PEITTYGTLLQGYATKG 353



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 207/440 (47%), Gaps = 26/440 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           Y++++ +L  +   ++AR +   + +K+G+    + + ++L+                  
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V   L+  Y   G +D A+  F  +R+            +I  + ++   
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D   SP   V+N L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++PD+ TYS LI+G C   ++D+A  LL  M   G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + TLI+G+CK  R      M++A  +  EM ++G++PD ITY I+L G  +   
Sbjct: 546 KPDCVTYNTLINGYCKISR------MEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + + G +L+   +  ++ G C+     EA RM + +    L+ +  T+ +
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I    K G       L   + ++G +P V TY+ +   L + G L+  + L  +M + G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 411 VVPDDITYNILLEGHCKHGN 430
              +    N ++    + G+
Sbjct: 720 CTANSRMLNSIVRKLLQRGD 739



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 1/216 (0%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M  +  L AS++   G     +  + L+  Y  +  ++DA+  FR +             
Sbjct: 530 MDEATKLLASMVSV-GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++  + +T         Y+ I + G    +  +N+++H LCK     +A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            L     +FN +I    K    DE   L + +  +G+ PDV TYS +   L ++  L++ 
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEEL 708

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + L   M E G T N  +  +++    + G I  AG
Sbjct: 709 DDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAG 744



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATY 348
           E A  +  E+++RG           ++   R        R  R M + G   + P+  TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNR-MARAGADEVTPNLCTY 94

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTML 407
            ++I   C  G    GF  L  +   G       +  L+ GLC   +  +A +++L  M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 408 DLGVVPDDITYNILLEGHCKHGNPED 433
            LG +P+  +YNILL+G C     ++
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQE 180


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 187/350 (53%), Gaps = 6/350 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D A++    + K+      R    ++     +  P   +GF  ++   G  P V  +N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           LM  LCK G+  +A+ +FD   KRGL     ++ TL+ G+     L E   L  +M  +G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + P+ Y +S LI    K+ ++D A L+  +M ++GL P+ V + T+I   CK+GR++   
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE--- 426

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +A +  ++M    L+P  I Y  L+   C     + A ++  EM+ RGI LD + F 
Sbjct: 427 ---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ++I   C+ G+V+E+E++   M+++G+KPD  TY+ +ID +C  G      +LL  M S 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           G  P   TYN L+NG CK  ++++A +L   M   GV PD ITYNI+L+G
Sbjct: 544 GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  +++   KEG +  A   + E   RG+    V+++++I   CKA+ +D+   +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  +G+ P+  TY+++++G C   +  +A   L +M   G+ P+ V + +L+D  CK
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NGR        EARK+ D M   GL P+  TY  LL G+  +G L     +   M++ GI
Sbjct: 317 NGRC------TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             ++  F+ LI  + + GKV +A  +  +M + GL PD  TY  VI   CK+G  +   R
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             ++M  +   P    YN+L++ LC   +   A  L+  MLD G+  D I +N +++ HC
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 427 KHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           K G   + +K   L    G+  D   Y++L+
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 175/369 (47%), Gaps = 34/369 (9%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G Y E+LD G  P+V  ++ ++  LCK   +  A  V     K G+     ++N++++G+
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C +    E       M   G+ PDV TY++L++ LCK  R  +A  +   M +RGL P  
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 235 VIFTTLIDGHCKNGR-IDM----------------------------AGDMKEARKIVDE 265
             + TL+ G+   G  ++M                             G + +A  +  +
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GLNPD +TY  ++   CK G +E A+   ++MI   +   N+ + +LI   C   K
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
             +A+ ++ EML  G+  D   +  +ID  CK G      +L   M   G  P + TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           L++G C  G++  A  LL +M+ +G+ PD +TYN L+ G+CK    ED    F +++S  
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES-S 578

Query: 442 GLVSDYACY 450
           G+  D   Y
Sbjct: 579 GVSPDIITY 587



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 171/331 (51%), Gaps = 9/331 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ YVF++L+    K+GK+  A +VF +  ++GL+   V++ T+I   CK+  +++ 
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R    M    + P    Y++LI+ LC  ++ D A+ L+ EM +RG+  + + F ++ID 
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDS 488

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ PD ITY+ L+DG+C  G ++ A  +   M+ 
Sbjct: 489 HCKEGRV------IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS 542

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+C+  ++ +A  + REM   G+ PD  TY +++    +   T  
Sbjct: 543 VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAA 602

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+     A  +   +    +  +  T+NI++ 
Sbjct: 603 AKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 662

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
              K G     +D     S  GLV D   Y+
Sbjct: 663 ALLKVGRNDEAKDLFAALSANGLVPDVRTYS 693



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 13/317 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +     ++  LI   C
Sbjct: 44  ELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTYGILIGSCC 102

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
            A  LD GF     +   G R D   ++ L+ GLC + R  DA +++L  M + G  PN 
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLE 292
             +  L+ G C   R       +EA +++  M  +G +  PD ++YT +++GF KEGDL+
Sbjct: 163 FSYNILLKGLCDENR------SQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLD 216

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A     EM+ RGI  + V ++++I+  C+   + +A  +L  M+K G+ P+  TY  ++
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +C +G  K     LK+M SDG  P V TYN+LM+ LCK+G+   A  + D+M   G+ 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK 336

Query: 413 PDDITYNILLEGHCKHG 429
           P+  TY  LL+G+   G
Sbjct: 337 PEITTYGTLLQGYATKG 353



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 207/440 (47%), Gaps = 26/440 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           Y++++ +L  +   ++AR +   + +K+G+    + + ++L+                  
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V   L+  Y   G +D A+  F  +R+            +I  + ++   
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D   SP   V+N L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++PD+ TYS LI+G C   ++D+A  LL  M   G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + TLI+G+CK  R      M++A  +  EM ++G++PD ITY I+L G  +   
Sbjct: 546 KPDCVTYNTLINGYCKISR------MEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + + G +L+   +  ++ G C+     EA RM + +    L+ +  T+ +
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I    K G       L   + ++G +P V TY+ +   L + G L+  + L  +M + G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 411 VVPDDITYNILLEGHCKHGN 430
              +    N ++    + G+
Sbjct: 720 CTANSRMLNSIVRKLLQRGD 739



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 1/216 (0%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M  +  L AS++   G     +  + L+  Y  +  ++DA+  FR +             
Sbjct: 530 MDEATKLLASMVSV-GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++  + +T         Y+ I + G    +  +N+++H LCK     +A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            L     +FN +I    K    DE   L + +  +G+ PDV TYS +   L ++  L++ 
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEEL 708

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + L   M E G T N  +  +++    + G I  AG
Sbjct: 709 DDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAG 744



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATY 348
           E A  +  E+++RG           ++   R        R  R M + G   + P+  TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNR-MARAGADEVTPNLCTY 94

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTML 407
            ++I   C  G    GF  L  +   G       +  L+ GLC   +  +A +++L  M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 408 DLGVVPDDITYNILLEGHCKHGNPED 433
            LG +P+  +YNILL+G C     ++
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQE 180


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 183/357 (51%), Gaps = 34/357 (9%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V +VL+    K G ++ A  V    G  GL  T    N L+    +A  ++  ++LK  M
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFM 236

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           EG+G+ PDVYTYS  +   CK    D A+ +  EM  R    N+V +  +I G C++G +
Sbjct: 237 EGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV 296

Query: 251 DMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTIL 281
           + A                             G +KEA+ ++DEM  +GL P+ + Y  L
Sbjct: 297 EEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATL 356

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DGF KEG    A DI  EMI  G++ + + +  LI G C+ G++  A ++L EM+KVG 
Sbjct: 357 VDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGH 416

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           +PD  TY  ++    ++ D    F LL EMR+ G LP   TY  ++NGLC++G+ K A  
Sbjct: 417 RPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGN 476

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLV 454
           LL+ M+  G+ P+   Y  L+ GH K G+     E  + + ++  ++ D  CY SL+
Sbjct: 477 LLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENM-TKANVLPDLFCYNSLI 532



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 184/343 (53%), Gaps = 9/343 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P+ Y + ++++ LC+ G+ K+A  + +E    GL   A  +  LI GH K  
Sbjct: 445 EMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEG 504

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++         M  + + PD++ Y++LI GL    R+++AE    ++ +RGL P++  ++
Sbjct: 505 HISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYS 564

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G+CK        ++++A +++ +M  +GL P+  TYT LL+G+ K  D E    I 
Sbjct: 565 GLIHGYCKTR------NLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSIL 618

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M+  G + DN  +  +I    R   +  A  +L E+ K GL PD   Y+ +I   CK 
Sbjct: 619 QSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKM 678

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            D +    LL EM  +G  P +  YNAL++G C+ G +  A  + D++L  G++P+ +TY
Sbjct: 679 ADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTY 738

Query: 419 NILLEGHCKHGNPED-FD--KLQSEKGLVSDYACYTSLVSKSS 458
             L++G+CK+G+  D FD  K   ++G+  D   Y  L +  S
Sbjct: 739 TALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCS 781



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 162/311 (52%), Gaps = 7/311 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P ++ +N L+  L   G+I++A+  + +  KRGL     +++ LI+G+CK +NL++  +L
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  SG++P+  TY+ L+ G  K N  +    +L  M   G  P++ I+  +I     
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIR---- 638

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              +  + +M+ A  ++ E+  NGL PD   Y+ L+ G CK  D+E A+ +  EM K G+
Sbjct: 639 --NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGL 696

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E   V + ALI GFCR G +  A  +   +L  GL P+  TYT +ID  CKNGD    F 
Sbjct: 697 EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFD 756

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L K+M   G  P    YN L  G      L+ A  L + M + G     + ++ L+ G C
Sbjct: 757 LYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSL-FSTLVRGFC 815

Query: 427 KHGNPEDFDKL 437
           K G  ++ +KL
Sbjct: 816 KRGRLQETEKL 826



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 42/320 (13%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +Y ++   G  P  + ++ L+H  CK   ++ A  +  +    GL   A ++  L+ G+ 
Sbjct: 547 YYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYF 606

Query: 176 KA-----------------------------------KNLDEGFRLKSVMEGSGMRPDVY 200
           K+                                   +N++  F + + +E +G+ PD++
Sbjct: 607 KSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLH 666

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
            YS+LI+GLCK   ++ A  LL EM + GL P  V +  LIDG C+      +GD+  AR
Sbjct: 667 IYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCR------SGDISRAR 720

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            + D +   GL P+ +TYT L+DG CK GD+  A D+ K+M+ RGI  D   +  L +G 
Sbjct: 721 NVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGC 780

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
                + +A  +  EM   G     + ++ ++  FCK G  +   +LL  M     +P  
Sbjct: 781 SDAADLEQALFLTEEMFNRGYA-HVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNA 839

Query: 381 ETYNALMNGLCKHGQLKNAN 400
           +T   ++    K G+L  A+
Sbjct: 840 QTVENVITEFGKAGKLCEAH 859



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 131/321 (40%), Gaps = 89/321 (27%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEM-------------CERGLTPND--------- 234
           P    ++ L   LC  +    A  LLH+M              +R +  +D         
Sbjct: 113 PSADAFARLAASLCAASHFPQANGLLHQMILAHPHPPLVLASIQRAIQDSDARSPSPSPS 172

Query: 235 ---VIFTTLIDGHCKNGRID-------MAGD----------------------MKEARKI 262
               +   L+D + KNG +        M GD                      M+   K+
Sbjct: 173 HSTAVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKL 232

Query: 263 VDEMCTNGLNPDKITYT-----------------------------------ILLDGFCK 287
              M   G+ PD  TY+                                   +++ G C+
Sbjct: 233 KGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCR 292

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G +E A   ++EM+  G+  D   + AL++G C+GG++ EA+ +L EM   GLKP+   
Sbjct: 293 SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVV 352

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  ++D F K G     F +L EM S G  P    Y+ L+ GLCK GQL  A+ LL+ M+
Sbjct: 353 YATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMI 412

Query: 408 DLGVVPDDITYNILLEGHCKH 428
            +G  PD  TY+ L++GH +H
Sbjct: 413 KVGHRPDTFTYHPLMQGHFQH 433



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 7/237 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I  + R+    V      E+   G  P +++++ L+  LCK   ++ A  + DE  K G
Sbjct: 636 VIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEG 695

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V +N LI+G C++ ++     +   +   G+ P+  TY+ALI+G CK   + DA 
Sbjct: 696 LEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAF 755

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M +RG+ P+  ++  L  G C +     A D+++A  + +EM   G     + ++
Sbjct: 756 DLYKDMLDRGIAPDAFVYNVLATG-CSD-----AADLEQALFLTEEMFNRGYAHVSL-FS 808

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            L+ GFCK G L+    +   M+ R I  +      +I+ F + GK+ EA R+  E+
Sbjct: 809 TLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAEL 865



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 6/148 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +    T     Y ++LD G +P  +V+NVL         ++ A  + +E   RG
Sbjct: 741 LIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            +A    F+TL+ G CK   L E  +L  VM    + P+  T   +I    K  +L +A 
Sbjct: 801 -YAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAH 859

Query: 220 LLLHEMCERGLTPN-----DVIFTTLID 242
            +  E+ ++  + +      ++FT +I+
Sbjct: 860 RVFAELQQKKASQSSTDRFSLLFTDMIN 887


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 187/350 (53%), Gaps = 6/350 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D A++    + K+      R    ++     +  P   +GF  ++   G  P V  +N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           LM  LCK G+  +A+ +FD   KRGL     ++ TL+ G+     L E   L  +M  +G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + P+ Y +S LI    K+ ++D A L+  +M ++GL P+ V + T+I   CK+GR++   
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE--- 426

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +A +  ++M    L+P  I Y  L+   C     + A ++  EM+ RGI LD + F 
Sbjct: 427 ---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ++I   C+ G+V+E+E++   M+++G+KPD  TY+ +ID +C  G      +LL  M S 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           G  P   TYN L+NG CK  ++++A +L   M   GV PD ITYNI+L+G
Sbjct: 544 GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  +++   KEG +  A   + E   RG+    V+++++I   CKA+ +D+   +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  +G+ P+  TY+++++G C   +  +A   L +M   G+ P+ V + +L+D  CK
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NGR        EARK+ D M   GL P+  TY  LL G+  +G L     +   M++ GI
Sbjct: 317 NGRC------TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             ++  F+ LI  + + GKV +A  +  +M + GL PD  TY  VI   CK+G  +   R
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             ++M  +   P    YN+L++ LC   +   A  L+  MLD G+  D I +N +++ HC
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 427 KHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           K G   + +K   L    G+  D   Y++L+
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 175/369 (47%), Gaps = 34/369 (9%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G Y E+LD G  P+V  ++ ++  LCK   +  A  V     K G+     ++N++++G+
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C +    E       M   G+ PDV TY++L++ LCK  R  +A  +   M +RGL P  
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 235 VIFTTLIDGHCKNGR-IDM----------------------------AGDMKEARKIVDE 265
             + TL+ G+   G  ++M                             G + +A  +  +
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GLNPD +TY  ++   CK G +E A+   ++MI   +   N+ + +LI   C   K
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
             +A+ ++ EML  G+  D   +  +ID  CK G      +L   M   G  P + TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           L++G C  G++  A  LL +M+ +G+ PD +TYN L+ G+CK    ED    F +++S  
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS- 578

Query: 442 GLVSDYACY 450
           G+  D   Y
Sbjct: 579 GVSPDIITY 587



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 171/331 (51%), Gaps = 9/331 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ YVF++L+    K+GK+  A +VF +  ++GL+   V++ T+I   CK+  +++ 
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R    M    + P    Y++LI+ LC  ++ D A+ L+ EM +RG+  + + F ++ID 
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDS 488

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ PD ITY+ L+DG+C  G ++ A  +   M+ 
Sbjct: 489 HCKEGRV------IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS 542

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+C+  ++ +A  + REM   G+ PD  TY +++    +   T  
Sbjct: 543 VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAA 602

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+     A  +   +    +  +  T+NI++ 
Sbjct: 603 AKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 662

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
              K G     +D     S  GLV D   Y+
Sbjct: 663 ALLKVGRNDEAKDLFAALSANGLVPDVRTYS 693



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 161/317 (50%), Gaps = 13/317 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +     ++  L+   C
Sbjct: 44  ELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTYGILMGSCC 102

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
            A  LD GF     +   G   D   ++ ++ GLC + R  DA +++L  M + G  PN 
Sbjct: 103 CAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLE 292
             +  L+ G C + R       +EA +++  M  +G +  PD ++YT +++GF KEGDL+
Sbjct: 163 FSYNILLKGLCDDNR------SQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLD 216

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A     EM+ RGI  + V ++++I+  C+   + +A  +L  M+K G+ P+  TY  ++
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +C +G  K     LK+M SDG  P V TYN+LM+ LCK+G+   A  + D+M   G+ 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK 336

Query: 413 PDDITYNILLEGHCKHG 429
           P+  TY  LL+G+   G
Sbjct: 337 PEITTYGTLLQGYATKG 353



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 207/440 (47%), Gaps = 26/440 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           Y++++ +L  +   ++AR +   + +K+G+    + + ++L+                  
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V   L+  Y   G +D A+  F  +R+            +I  + ++   
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D   SP   V+N L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++PD+ TYS LI+G C   ++D+A  LL  M   G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + TLI+G+CK  R      M++A  +  EM ++G++PD ITY I+L G  +   
Sbjct: 546 KPDCVTYNTLINGYCKISR------MEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + + G +L+   +  ++ G C+     EA RM + +    L+ +  T+ +
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I    K G       L   + ++G +P V TY+ +   L + G L+  + L  +M + G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 411 VVPDDITYNILLEGHCKHGN 430
              +    N ++    + G+
Sbjct: 720 CTANSRMLNSIVRKLLQRGD 739



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 1/216 (0%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M  +  L AS++   G     +  + L+  Y  +  ++DA+  FR +             
Sbjct: 530 MDEATKLLASMVSV-GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++  + +T         Y+ I + G    +  +N+++H LCK     +A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            L     +FN +I    K    DE   L + +  +G+ PDV TYS +   L ++  L++ 
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEEL 708

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + L   M E G T N  +  +++    + G I  AG
Sbjct: 709 DDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAG 744



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATY 348
           E A  +  E+++RG           ++   R        R  R M + G   + P+  TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNR-MARAGADEVTPNLCTY 94

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTML 407
            +++   C  G    GF  L  +   G +     +  ++ GLC   +  +A +++L  M 
Sbjct: 95  GILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMT 154

Query: 408 DLGVVPDDITYNILLEGHCKHGNPED 433
            LG +P+  +YNILL+G C     ++
Sbjct: 155 QLGCIPNVFSYNILLKGLCDDNRSQE 180


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 178/315 (56%), Gaps = 6/315 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G SP+   FNVL++  CK+     A  VF+E  ++G+ A+ V+++ L+ G C   
Sbjct: 248 EMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEG 307

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++EG +L   M+  G+ P++ T ++++NG CK+  + DAE  +  M ++ + PN V +T
Sbjct: 308 KVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYT 367

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG+    R+D    MK+A  + + M   G+ P+   Y  L+ GF + GD  S   + 
Sbjct: 368 ILVDGY---RRLD---KMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLL 421

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  +G+  D V +  LI   C  G+V +A ++L EML VGL+P   TY  +I+ +C+ 
Sbjct: 422 DEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEK 481

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ K+ + +   M        V TYN  +  LC+ G+++  N LL+ ML+ G+VP+ +TY
Sbjct: 482 GNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTY 541

Query: 419 NILLEGHCKHGNPED 433
           + + EG  + G   D
Sbjct: 542 DTIKEGMMEKGYTPD 556



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 167/337 (49%), Gaps = 12/337 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + PS +  N L+  L    ++  A+  F    +R +     +FN +I+G CK   L +  
Sbjct: 146 HRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAG 205

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENR---LDDAELLLHEMCERGLTPNDVIFTTLI 241
            +   +   G+ P V TY+ +I+G CK  R   +   + LL EM E G++PN+V F  L+
Sbjct: 206 DVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLV 265

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CK+       +   A ++ +EM   G+    +TY+ L+ G C EG +E  + +  EM
Sbjct: 266 NGYCKDS------NTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEM 319

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              G+  +     ++++GFC+ G + +AE  +  M +  +KP+  TYT+++D + +    
Sbjct: 320 KDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKM 379

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           K    + + M   G  P    YN L+ G  ++G  ++ + LLD M   GV  D +TYN+L
Sbjct: 380 KDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVL 439

Query: 422 LEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVS 455
           +   C  G      KL  E    GL   +  Y ++++
Sbjct: 440 IGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIIN 476



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           KKGM + A  +   +E +    P +V   +++  Y  L  + DA+     +     R  A
Sbjct: 340 KKGMMTDAEGWIDSMEQKNVK-PNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNA 398

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           R   CLI    R        G   E+   G    +  +NVL+  LC +G+++ A  + DE
Sbjct: 399 RIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDE 458

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
               GL    +++NT+ING+C+  N+   + +++ ME    R +V TY+  I  LC+  +
Sbjct: 459 MLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGK 518

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           +++   LL+EM E+GL PN V + T+ +G  + G
Sbjct: 519 MEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKG 552


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 179/321 (55%), Gaps = 8/321 (2%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +T GF +  +IL  GY P     N L+  LC +G++K A    D+   +G     VS+ T
Sbjct: 110 ITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYAT 169

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     +L   ++G   +P+V  YS +I+ LCK   + +A  L  EM  +G
Sbjct: 170 LINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++ + V ++TLI G C      + G +KEA  +++EM    +NP+  TY IL+D  CKEG
Sbjct: 230 ISADVVTYSTLIYGFC------IEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A  +   M+K  ++ D + ++ L+ G+    +V +A+ +   M  +G+ PD  TYT
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I+ FCKN        L KEM     +P + TY++L++GLCK G++     L+D M D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR 403

Query: 410 GVVPDDITYNILLEGHCKHGN 430
           G   D ITY+ L++G CK+G+
Sbjct: 404 GQPADVITYSSLIDGLCKNGH 424



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 175/307 (57%), Gaps = 6/307 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V +++ ++  LCK   + +A  +F E   +G+ A  V+++TLI G C    L E   L
Sbjct: 197 PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGL 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    + P+VYTY+ L++ LCKE ++ +A+ +L  M +  + P+ + ++TL+DG+  
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF- 315

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                +  ++K+A+ + + M   G+ PD  TYTIL++GFCK   ++ AL++ KEM ++ +
Sbjct: 316 -----LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               V +++LI G C+ G++     ++ EM   G   D  TY+ +ID  CKNG       
Sbjct: 371 VPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIA 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  +M+     P + T+  L++GLCK G+LK+A  +   +L  G   +  TYN+++ GHC
Sbjct: 431 LFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHC 490

Query: 427 KHGNPED 433
           K G  E+
Sbjct: 491 KQGLLEE 497



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 167/300 (55%), Gaps = 6/300 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   E++    +P+VY +N+L+  LCKEGK+K+A+ V     K  +    ++++TL++
Sbjct: 253 AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+     + +   + + M   G+ PDV+TY+ LING CK   +D+A  L  EM ++ + P
Sbjct: 313 GYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
             V +++LIDG CK+GRI    D+      +DEM   G   D ITY+ L+DG CK G L+
Sbjct: 373 GIVTYSSLIDGLCKSGRIPYVWDL------IDEMRDRGQPADVITYSSLIDGLCKNGHLD 426

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ +  +M  + I  +   FT L+ G C+GG++ +A+ + +++L  G   +  TY ++I
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  CK G  +    +L +M  +G +P   T+  ++  L K  +   A  LL  M+  G++
Sbjct: 487 NGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 195/401 (48%), Gaps = 6/401 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   L  +G  L  +    L+     +G    AI+  R +     +     
Sbjct: 142 KGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM 201

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID + +  L +   G + E+   G S  V  ++ L++  C EGK+K+A  + +E  
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            + ++    ++N L++  CK   + E   + +VM  + ++PDV TYS L++G      + 
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ + + M   G+TP+   +T LI+G CKN  +D      EA  +  EM    + P  +
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD------EALNLFKEMHQKNMVPGIV 375

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY+ L+DG CK G +    D+  EM  RG   D + +++LI G C+ G +  A  +  +M
Sbjct: 376 TYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKM 435

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
               ++P+  T+T+++D  CK G  K    + +++ + G+   V TYN ++NG CK G L
Sbjct: 436 KDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLL 495

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           + A  +L  M D G +P+  T+  ++    K    +  +KL
Sbjct: 496 EEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKL 536



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 6/256 (2%)

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +N+D+     + M      P +  ++ +++   K      A  L H +  +G+ P+ +  
Sbjct: 38  QNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITL 97

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             LI+  C  G+I           ++ ++   G  PD +T   L+ G C +G ++ AL  
Sbjct: 98  NILINCFCHMGQITFGFS------VLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHF 151

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +++ +G +L+ V++  LI+G C+ G    A ++LR++     KP+   Y+ +ID  CK
Sbjct: 152 HDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCK 211

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                  + L  EM   G    V TY+ L+ G C  G+LK A  LL+ M+   + P+  T
Sbjct: 212 YQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYT 271

Query: 418 YNILLEGHCKHGNPED 433
           YNIL++  CK G  ++
Sbjct: 272 YNILVDALCKEGKVKE 287



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 16/241 (6%)

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
             +DDA    + M     TP  + F  ++D   K      A  +    ++       G+ 
Sbjct: 38  QNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLEL------KGIQ 91

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD IT  IL++ FC  G +     +  +++KRG   D V    LI G C  G+V +A   
Sbjct: 92  PDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHF 151

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--PAVETYNALMNGL 390
             ++L  G + +  +Y  +I+  CK GDT+   +LL+++  DG L  P VE Y+ +++ L
Sbjct: 152 HDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKI--DGRLTKPNVEMYSTIIDAL 209

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACY 450
           CK+  +  A  L   M   G+  D +TY+ L+ G C  G      KL+   GL+++    
Sbjct: 210 CKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEG------KLKEAIGLLNEMVLK 263

Query: 451 T 451
           T
Sbjct: 264 T 264



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D    P+++ F +L+  LCK G++KDAQ VF +   +G
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            H    ++N +INGHCK   L+E   + S ME +G  P+ +T+  +I  L K++  D AE
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAE 534

Query: 220 LLLHEMCERGL 230
            LL +M  RGL
Sbjct: 535 KLLRQMIARGL 545


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 183/358 (51%), Gaps = 46/358 (12%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR-LKSV 189
            FN+++  LC  GK   A  +  +  +      AV++NT+I G C    +      ++ +
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVMREM 173

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNG 248
            E  G+ PD YTY+ LI+G CK  R++DA  +  EM  +G + P+ V++  LI G+C  G
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRG 233

Query: 249 RIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYT 279
           ++D+A                             G   +A  +++EM  NGL+PD  TY 
Sbjct: 234 KLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYN 293

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL++G+CKEG+ + AL++ +EM ++G+    V +T+LI  F R G+V E +R+ +  +K 
Sbjct: 294 ILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKK 353

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++PD   Y  +I+  C  GD +  F ++ EM      P   TYN L+ G C  G+L  A
Sbjct: 354 GIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEA 413

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             L+D M   G+ PD         G CK+G  +D + L  E   KG+  D + Y SL+
Sbjct: 414 RGLIDEMTKRGIQPD--------LGLCKNGQGDDAENLMKEMVGKGITPDDSTYISLI 463



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 187/439 (42%), Gaps = 74/439 (16%)

Query: 1   PHFRLTLHA----YSTMVHFLVAHKMHSQARDL--LHLIVSKKGMGSSASLFASILETRG 54
           PH  LT  A    ++T + F    K  S    +  LH ++S      + +LFA I   R 
Sbjct: 53  PHLLLTASAAARPHATSLRFYAQLKSLSVPIPVASLHPLLSSLPSAPAFALFADIYRLR- 111

Query: 55  THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTL 114
             LP L      I+   L      ++   LLR+             + R       TV  
Sbjct: 112 --LP-LCTTTFNIMLRHLCATGKPVRALELLRQ-------------MPRPNAVTYNTVIA 155

Query: 115 GF--------YLEILDY-----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-L 160
           GF         LE++       G +P  Y +  L+   CK G+++DA  VFDE   +G +
Sbjct: 156 GFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEV 215

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
             +AV +N LI G+C    LD   + +  M   G+   V TY+ L++ L  + R  DA  
Sbjct: 216 APSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYA 275

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------------------------- 253
           +L EM   GL+P+   +  LI+G+CK G    A                           
Sbjct: 276 VLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFS 335

Query: 254 --GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
             G ++E  ++       G+ PD + Y  L++  C  GD+E A +I  EM K+ I  D+V
Sbjct: 336 RKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDV 395

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI GFC  G++ EA  ++ EM K G++PD           CKNG       L+KEM
Sbjct: 396 TYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLG--------LCKNGQGDDAENLMKEM 447

Query: 372 RSDGHLPAVETYNALMNGL 390
              G  P   TY +L+ GL
Sbjct: 448 VGKGITPDDSTYISLIEGL 466



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 23/283 (8%)

Query: 39  MGSSASLFASILETRGTHLPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           M  +A +F  +L T+G   P  V+ +AL+  Y D G LD A+Q    + +    +     
Sbjct: 199 MEDAAKVFDEML-TQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATY 257

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             L+  +      +       E+   G SP V+ +N+L++  CKEG  K A  VF+E  +
Sbjct: 258 NLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSR 317

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           +G+ ATAV++ +LI    +   + E  RL  V    G+RPDV  Y+ALIN  C    ++ 
Sbjct: 318 KGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMER 377

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------------GDM 256
           A  ++ EM ++ + P+DV + TLI G C  GR+D A                     G  
Sbjct: 378 AFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLGLCKNGQG 437

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
            +A  ++ EM   G+ PD  TY  L++G     +  SA D  K
Sbjct: 438 DDAENLMKEMVGKGITPDDSTYISLIEGLTTVDEQMSAADAAK 480


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 173/335 (51%), Gaps = 29/335 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y +  +++ LCK G+   A  +F +  + G     V+++TLI+  CK + ++E 
Sbjct: 75  GCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEA 134

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + S M+   + P ++TY++LI GLC  +R  +A  LL+EM    + PN V F  L+D 
Sbjct: 135 LDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDT 194

Query: 244 HCKNGRI-----------------------------DMAGDMKEARKIVDEMCTNGLNPD 274
            CK G++                              M  ++ EARK+ D M T G  PD
Sbjct: 195 FCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPD 254

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             +Y+IL++G+CK   ++ A  +  EMI +G   +NV++  LI G C+ G++ EA+ + +
Sbjct: 255 VFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFK 314

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M   G  P+  TY +++D FCK G     FRL + M+S    P +  YN L+N +CK G
Sbjct: 315 NMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSG 374

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            LK+A  L   +  +G+ P+   Y  ++ G CK G
Sbjct: 375 NLKDARELFSELFVIGLQPNVQIYTTIINGLCKEG 409



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 157/288 (54%), Gaps = 6/288 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FNVL+   CKEGK+  A+ V     + G+    V++N+L+ G+     + E  +L
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKL 242

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             VM   G +PDV++YS LING CK  R+D+A+ L +EM  +G TPN+V + TLI G C+
Sbjct: 243 FDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQ 302

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR      ++EA+ +   M TNG  P+  TY ILLDGFCK+G L  A  + + M    +
Sbjct: 303 LGR------LREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYL 356

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + + V +  L++  C+ G + +A  +  E+  +GL+P+   YT +I+  CK G       
Sbjct: 357 KPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALE 416

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             + M  DG  P   +YN ++ G  +H     A  L+  M D G + D
Sbjct: 417 AFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITD 464



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 169/335 (50%), Gaps = 29/335 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP+    N+L++  C+  ++     V  +  K GL  T V+F TLING  K     + 
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G +PD YTY+ +INGLCK      A  L  +M E G   N V ++TLI  
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124

Query: 244 HCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNGLNPD 274
            CK  R++ A D+                             KEA  +++EM +  + P+
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +T+ +L+D FCKEG + +A  + K M + G+E D V + +L+ G+    +VVEA ++  
Sbjct: 185 VVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFD 244

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M+  G KPD  +Y+++I+ +CK        +L  EM   G  P   +YN L++GLC+ G
Sbjct: 245 VMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLG 304

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +L+ A  L   M   G +P+  TY ILL+G CK G
Sbjct: 305 RLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQG 339



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 9/276 (3%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ME +G+ P+  T + LIN  C+  R+D    +L +  + GL P  V FTTLI+G  K   
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGK--- 57

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
               G   +A ++ D+M   G  PD  TYT +++G CK G+   A  + K+M + G +L+
Sbjct: 58  ---VGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLN 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V ++ LI   C+  +V EA  +   M    + P   TYT +I   C     K    LL 
Sbjct: 115 VVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLN 174

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM S   +P V T+N L++  CK G++  A  +L TM ++GV PD +TYN L+ G+    
Sbjct: 175 EMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWT 234

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
              +  KL      KG   D   Y+ L++   K ++
Sbjct: 235 EVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKR 270



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 23/342 (6%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T+  Y++++  L       +A  LL+ + S   M +  + F  +++T       L  + +
Sbjct: 149 TIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVT-FNVLVDTFCKEGKVLAAEGV 207

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +    ++G   D +    L+  +         R L D M+                  G 
Sbjct: 208 LKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITK----------------GC 251

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P V+ +++L++  CK  +I +A+ +F+E   +G     VS+NTLI+G C+   L E   
Sbjct: 252 KPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQD 311

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M  +G  P++YTY+ L++G CK+  L  A  L   M    L PN V++  L++  C
Sbjct: 312 LFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMC 371

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K      +G++K+AR++  E+   GL P+   YT +++G CKEG L+ AL+  + M   G
Sbjct: 372 K------SGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG 425

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
              D  ++  +I GF +      A  ++ EM   G   D  T
Sbjct: 426 CPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 212/420 (50%), Gaps = 31/420 (7%)

Query: 50  LETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCF-RLLRKHY------FRIPARGCRCLI 101
           +E RG   P LV  + L+  +  LG +  A   F ++L+  Y      F   ++G  CL 
Sbjct: 111 MEFRGIK-PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGL-CLK 168

Query: 102 DRMMRTNL---PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++ +  L     V LGF+ + + YG          L+H LCK G+ + A  +       
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYG---------TLIHGLCKVGETRAALDLLQRVDGN 219

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +    V +NT+I+  CK K ++E F L S M   G+ PDV TYSALI+G C   +L DA
Sbjct: 220 LVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDA 279

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L ++M    + P+   F  L++  CK+G+      MKE + + D M   G+ P+ +TY
Sbjct: 280 IDLFNKMILENIKPDVYTFNILVNAFCKDGK------MKEGKTVFDMMMKQGIKPNFVTY 333

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+DG+C   ++  A  I   M + G+  D  +++ +I+GFC+  K  EA  + +EM +
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
             + PD  TY+ +ID   K+G      +L+ +M   G  P + TYN++++ LCK  Q+  
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDK 453

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           A  LL    D G  PD  TY+IL++G C+ G  ED  K+  +   KG   D   YT ++ 
Sbjct: 454 AIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQ 513



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 159/285 (55%), Gaps = 6/285 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P VY FN+L++  CK+GK+K+ + VFD   K+G+    V++N+L++G+C  K +++   +
Sbjct: 293 PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSI 352

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G+ PD+ +YS +ING CK  + D+A  L  EM  + + P+ V +++LIDG  K
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +GRI  A       ++VD+M   G+ P+  TY  +LD  CK   ++ A+ +  +   +G 
Sbjct: 413 SGRISYA------LQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGF 466

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D   ++ LI G C+ GK+ +A ++  ++L  G   D   YT++I  FC  G       
Sbjct: 467 QPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALA 526

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           LL +M  +G +P  +TY  ++  L K  +   A  LL  M+  G+
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 191/405 (47%), Gaps = 21/405 (5%)

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFR-IPARGCRCLIDRMMRTNLPTV---------TLGFY 117
           V  D  F+    Q F+ L+  +F  IP    +  I+ +  ++  T           +  +
Sbjct: 16  VVPDSHFVPKKFQSFQFLKNTHFNFIPYSSSK--INFISYSSTSTTFHSNNDVDDAVSLF 73

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             +L    +P  + FN ++  L K         +  +   RG+    V+ N LIN  C+ 
Sbjct: 74  NRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQL 133

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +   F + + +   G  PD  T++ L  GLC + ++  A L   ++   G   + + +
Sbjct: 134 GLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISY 193

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            TLI G CK       G+ + A  ++  +  N + P+ + Y  ++D  CK   +  A D+
Sbjct: 194 GTLIHGLCK------VGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDL 247

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             EM+ +GI  D V ++ALISGFC  GK+ +A  +  +M+   +KPD  T+ ++++ FCK
Sbjct: 248 FSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCK 307

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           +G  K G  +   M   G  P   TYN+LM+G C   ++  A  + +TM   GV PD  +
Sbjct: 308 DGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQS 367

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           Y+I++ G CK    ++   L  E   K ++ D   Y+SL+   SK
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 171/341 (50%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID M +  L       + E++  G SP V  ++ L+   C  GK+KDA  +F++     
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILEN 290

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     +FN L+N  CK   + EG  +  +M   G++P+  TY++L++G C    ++ A+
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M + G+ P+   ++ +I+G CK  + D      EA  +  EM    + PD +TY+
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD------EAMNLFKEMHRKNIIPDVVTYS 404

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG  K G +  AL +  +M  RG+  +   + +++   C+  +V +A  +L +    
Sbjct: 405 SLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDK 464

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G +PD +TY+++I   C++G  +   ++ +++   G+   V  Y  ++ G C  G    A
Sbjct: 465 GFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEA 524

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             LL  M D G +PD  TY I++    K    +  +KL  E
Sbjct: 525 LALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLRE 565



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 92  IPARGC--RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
           +P   C    ++D + +T+     +    +  D G+ P +  +++L+  LC+ GK++DA+
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDAR 490

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            VF++   +G +    ++  +I G C     +E   L S ME +G  PD  TY  +I  L
Sbjct: 491 KVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSL 550

Query: 210 CKENRLDDAELLLHEMCERGLTPN 233
            K++  D AE LL EM  RGL  N
Sbjct: 551 FKKDENDMAEKLLREMIARGLPLN 574


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 188/345 (54%), Gaps = 9/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           +   +  IL  GY P+      L+  LC +G+I  A    D+    G H   V + TLIN
Sbjct: 110 SFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLIN 169

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK        +L   ++G  ++P+V  Y+ +I+ +CK   +++A  L  EM  +G++P
Sbjct: 170 GLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISP 229

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V ++ LI G C      + G + +A  + ++M +  +NPD  T++IL+DGFCKEG ++
Sbjct: 230 DVVTYSALISGFC------ILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVK 283

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++   M+K+GI+ D V + +L+ G+C   +V +A+ +   M + G+  +  +Y ++I
Sbjct: 284 EAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMI 343

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + FCK         L KEM     +P V TYN+L++GLCK G++  A  L+D M D GV 
Sbjct: 344 NGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVP 403

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            D ITYN +L+  CK+   +    L +   ++G+  D   YT L+
Sbjct: 404 HDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILI 448



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 180/324 (55%), Gaps = 9/324 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+V ++N ++  +CK   + +A  ++ E   +G+    V+++ LI+G C    L++   
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M    + PDVYT+S L++G CKE R+ +A+ +L  M ++G+ P+ V + +L+DG+C
Sbjct: 253 LFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYC 312

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
                 +   + +A+ I + M   G+  +  +Y I+++GFCK   ++ A+++ KEM  + 
Sbjct: 313 ------LVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKN 366

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D V + +LI G C+ GK+  A +++ EM   G+  D  TY  ++D  CKN       
Sbjct: 367 IIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAI 426

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL +M+ +G  P + TY  L++GLCK G+LK+A  + + +L  G      TY ++++G 
Sbjct: 427 ALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGF 486

Query: 426 CKHGNPEDFDKLQSEKGLVSDYAC 449
           C +   + FDK  +    + D  C
Sbjct: 487 CDN---DLFDKALALLSKMEDNGC 507



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 188/386 (48%), Gaps = 6/386 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   +   G HL  +    L+     +G    A+Q  R +     +     
Sbjct: 139 KGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVM 198

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID M +  L       Y E++  G SP V  ++ L+   C  GK+ DA  +F++  
Sbjct: 199 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMI 258

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
              ++    +F+ L++G CK   + E   + ++M   G++PDV TY +L++G C   +++
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVN 318

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ + + M + G+T N   +  +I+G CK  ++D      EA  +  EM    + PD +
Sbjct: 319 KAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVD------EAMNLFKEMHCKNIIPDVV 372

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+DG CK G +  AL +  EM  RG+  D + + +++   C+  +V +A  +L +M
Sbjct: 373 TYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G++PD  TYT++ID  CK G  K    + +++   G+   V TY  ++ G C +   
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLF 492

Query: 397 KNANMLLDTMLDLGVVPDDITYNILL 422
             A  LL  M D G +P+  TY I++
Sbjct: 493 DKALALLSKMEDNGCIPNAKTYEIII 518



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 9/366 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++  +++ N     +  + E+   G +  +  FN+L++   + G    +  VF    K+G
Sbjct: 62  ILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKG 121

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
               A++  TLI G C    + +       +   G   +   Y  LINGLCK  +   A 
Sbjct: 122 YEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAAL 181

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  +  + + PN V++ T+ID  CK   ++      EA  +  EM + G++PD +TY+
Sbjct: 182 QLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVN------EAFDLYSEMVSKGISPDVVTYS 235

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC  G L  A+ +  +MI   I  D   F+ L+ GFC+ G+V EA+ +L  M+K 
Sbjct: 236 ALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQ 295

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+KPD  TY  ++D +C          +   M   G    V++YN ++NG CK  ++  A
Sbjct: 296 GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEA 355

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
             L   M    ++PD +TYN L++G CK G      KL  E   +G+  D   Y S++  
Sbjct: 356 MNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDA 415

Query: 457 SSKYRQ 462
             K  Q
Sbjct: 416 LCKNHQ 421



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 167/300 (55%), Gaps = 6/300 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G + +++    +P VY F++L+   CKEG++K+A+ V     K+G+    V++ +L++
Sbjct: 250 AIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMD 309

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C  K +++   + + M   G+  +V +Y+ +ING CK  ++D+A  L  EM  + + P
Sbjct: 310 GYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIP 369

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + +LIDG CK+G+I  A       K+VDEM   G+  DKITY  +LD  CK   ++
Sbjct: 370 DVVTYNSLIDGLCKSGKISYA------LKLVDEMHDRGVPHDKITYNSILDALCKNHQVD 423

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ +  +M   GI+ D   +T LI G C+GG++ +A+ +  ++L  G      TYT++I
Sbjct: 424 KAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMI 483

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             FC N        LL +M  +G +P  +TY  ++  L +  +   A  LL  M+  G++
Sbjct: 484 QGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL 543



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + + +     +    ++ D G  P +Y + +L+  LCK G++KDAQ +F++   +G
Sbjct: 412 ILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKG 471

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            + T  ++  +I G C     D+   L S ME +G  P+  TY  +I  L +++  D AE
Sbjct: 472 YNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAE 531

Query: 220 LLLHEMCERGL 230
            LL EM  RGL
Sbjct: 532 KLLREMIARGL 542



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 42/208 (20%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N L+  LCK GKI  A  + DE   RG+    +++N++++  CK   +D+   L
Sbjct: 369 PDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIAL 428

Query: 187 KSVMEGSGMRPD-----------------------------------VYTYSALINGLCK 211
            + M+  G++PD                                   VYTY+ +I G C 
Sbjct: 429 LTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCD 488

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG- 270
            +  D A  LL +M + G  PN   +  +I    +    DM      A K++ EM   G 
Sbjct: 489 NDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDM------AEKLLREMIARGL 542

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIR 298
           L   K  Y +    F +  +L   L++R
Sbjct: 543 LFGWKKAYCLFTRFFQRRSNLYPPLEVR 570


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 194/362 (53%), Gaps = 19/362 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           CRC      +T      LG   +++  GY P    FN L++ LC E K+ +A ++     
Sbjct: 111 CRCC-----KTCFAYSVLG---KVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMV 162

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G     V++N+++NG CK+ +      L   M+   ++ DV+TYS +I+ LC++  +D
Sbjct: 163 ENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCID 222

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L  EM  +G+  + V + +L+ G CK      AG   +  +++ +M +  + P+ I
Sbjct: 223 AAISLFKEMETKGIKSSLVTYNSLVGGLCK------AGKWNDGVQLLKDMTSRKIIPNVI 276

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+ +L+D F KEG L+ A ++ KEMI +GI  + + + +L+ G+C   ++ EA  ML  M
Sbjct: 277 TFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLM 336

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           ++    PD  T+T +I  +CK      G +L +++   G +    TY+ L+ G C+ G+L
Sbjct: 337 VRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKL 396

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTS 452
           + A  L   M+ LGV+PD +TY ILL+G C +G  E     F+ LQ  K +  D   YT 
Sbjct: 397 EIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK-MNLDIVMYTI 455

Query: 453 LV 454
           ++
Sbjct: 456 II 457



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 175/341 (51%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + R       +  + E+   G   S+  +N L+  LCK GK  D   +  +   R 
Sbjct: 211 IIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRK 270

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    ++FN LI+   K   L E   L   M   G+ P+  TY++L++G C +NRL +A 
Sbjct: 271 IIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEAN 330

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L  M     +P+ V FT+LI G+CK  R+D      E  K+  ++   GL  + +TY+
Sbjct: 331 NMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVD------EGMKLFRKISKRGLVANTVTYS 384

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+ GFC+ G LE A ++ +EM+  G+  D + +  L+ G C  GK+ +A  +  ++ K 
Sbjct: 385 ILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 444

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +  D   YT++I+  CK G  +  + L   +   G  P V TY  +++GLCK G L  A
Sbjct: 445 KMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 504

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N+LL  M + G  P+D TYN L+  H + G+     KL  E
Sbjct: 505 NILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEE 545



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 169/297 (56%), Gaps = 6/297 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FNVL+    KEGK+++A  ++ E   +G+    +++N+L++G+C    L E   +
Sbjct: 273 PNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNM 332

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M  +   PD+ T+++LI G CK  R+D+   L  ++ +RGL  N V ++ L+ G C+
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ 392

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G++++A       ++  EM + G+ PD +TY ILLDG C  G LE AL+I +++ K  +
Sbjct: 393 SGKLEIA------EELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 446

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V +T +I G C+GGKV +A  +   +   G+KP+  TYT++I   CK G       
Sbjct: 447 NLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 506

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           LL++M  DG+ P   TYN L+    + G L  +  L++ M   G   D  +  ++++
Sbjct: 507 LLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 157/322 (48%), Gaps = 9/322 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F E  +     + V F+   +G    K  +        ME +G+  ++YT +
Sbjct: 45  KEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLN 104

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +IN  C+  +   A  +L ++ + G  P+   F TLI+G C   ++       EA  +V
Sbjct: 105 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKV------SEAVVLV 158

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
             M  NG  P+ +TY  +++G CK GD   ALD+ ++M +R ++ D   ++ +I   CR 
Sbjct: 159 ARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRD 218

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G +  A  + +EM   G+K    TY  ++   CK G    G +LLK+M S   +P V T+
Sbjct: 219 GCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITF 278

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK---LQSE 440
           N L++   K G+L+ AN L   M+  G+ P+ ITYN L++G+C      + +    L   
Sbjct: 279 NVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVR 338

Query: 441 KGLVSDYACYTSLVSKSSKYRQ 462
                D   +TSL+    K ++
Sbjct: 339 NNCSPDIVTFTSLIKGYCKVKR 360



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 50  LETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           L  R    P +V   +L+  Y  +  +D+ ++ FR + K            L+    ++ 
Sbjct: 335 LMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSG 394

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              +    + E++  G  P V  + +L+  LC  GK++ A  +F++  K  ++   V + 
Sbjct: 395 KLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYT 454

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            +I G CK   +++ + L   +   G++P+V TY+ +I+GLCK+  L +A +LL +M E 
Sbjct: 455 IIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 514

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           G  PND  + TLI  H ++      GD+  + K+++EM + G + D  +  +++D
Sbjct: 515 GNEPNDCTYNTLIRAHLRD------GDLTASAKLIEEMKSCGFSADASSIKMVID 563



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G++LD L     D G L+ A++ F  L+K    +       +I+ M +          + 
Sbjct: 419 GILLDGL----CDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFC 474

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            +   G  P+V  + V++  LCK+G + +A ++  +  + G      ++NTLI  H +  
Sbjct: 475 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDG 534

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           +L    +L   M+  G   D  +   +I+ L
Sbjct: 535 DLTASAKLIEEMKSCGFSADASSIKMVIDML 565


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 184/372 (49%), Gaps = 6/372 (1%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y   G L+ +++  + +  H   + A     LID  ++       L  Y  +   G  P 
Sbjct: 64  YASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPD 123

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
            Y FNVLM+   K  ++     +F+E   +      ++++ LI+  CK   +++  ++  
Sbjct: 124 TYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFL 183

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M+  G RP+++TY+++I+GL K   +D A  L  EM   GL    V++ +LI G  ++G
Sbjct: 184 DMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSG 243

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R D A       K+  EM + GL PD +T+T L+ G    G    A  I +E    G  L
Sbjct: 244 RADAAA------KLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCAL 297

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D   +  LI   C+  ++ EA  +  E+ + GL PD  T+  ++D  CK+G     F LL
Sbjct: 298 DVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILL 357

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M+  G  P V  YN L++GL K G+++ A  LL  M  LG  PD +TYN L++  CK 
Sbjct: 358 GDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKG 417

Query: 429 GNPEDFDKLQSE 440
           G  ED  +L  E
Sbjct: 418 GRIEDALRLFEE 429



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 175/332 (52%), Gaps = 9/332 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +N L+    K G  + A  V+   G+ GL     +FN L+N   KAK +D  ++L   M
Sbjct: 91  AYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEM 150

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +     P+V TYS LI+ +CK   ++ A  +  +M  RG  PN   +T++IDG  K+G +
Sbjct: 151 QNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHV 210

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D      +A  + +EM + GL   ++ Y  L+ G  + G  ++A  + +EM+ +G++ D+
Sbjct: 211 D------KAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDH 264

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V FT+L+ G    G+  EA R+ +E   VG   D   Y ++ID  CK+      + +  E
Sbjct: 265 VTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGE 324

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           +  DG +P V T+NALM+GLCK G++ +A +LL  M   G  PD   YN L++G  K G 
Sbjct: 325 LEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGR 384

Query: 431 PEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            E+  +L  E    G   D   Y +L+ +S K
Sbjct: 385 VEEAGQLLLEMQSLGYEPDVVTYNTLIDESCK 416



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 3/195 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + ++         + E+ + G  P VY FN LM  LCK G+I DA ++  +  + G
Sbjct: 305 LIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG 364

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                  +NTLI+G  K+  ++E  +L   M+  G  PDV TY+ LI+  CK  R++DA 
Sbjct: 365 CTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDAL 424

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  E+  +G   N V + T+++G C  GR+D A  +    K   E     ++PD +TYT
Sbjct: 425 RLFEEISAKGFA-NTVTYNTILNGLCMAGRVDEAYKLFNGMK--QETVDGVIDPDFVTYT 481

Query: 280 ILLDGFCKEGDLESA 294
            LL+G  + G  E A
Sbjct: 482 TLLNGARQAGLSELA 496


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 221/435 (50%), Gaps = 22/435 (5%)

Query: 7   LHAYSTMVHFLVAHKMHSQAR----DLLH-LIVSKKGMGSSASLFASILETRGTHLPGLV 61
           LH YS ++H+L   K++  AR    DL+  L+ S      ++ +F ++ + RG+     V
Sbjct: 62  LHLYSAVIHYLTGAKVYPTARCLTKDLIQTLLQSCTPRRVNSLVFNALSQLRGSKFNPSV 121

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEI 120
              L+I + ++G +D+A++ +  L+   F  PA + C  L++ +++ +   +    Y  +
Sbjct: 122 FGVLIIAFSEVGLVDEALRVY--LKVGAF--PAVQACNALLNGLLKKSSFDIMWELYNNM 177

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +     P+V  +NVL+   C++G +  A+ +  E  K+G+  T V + TLI+G C    L
Sbjct: 178 VSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKL 237

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   +   M+ SG+ P++YTY+ L++G CK   +  A  L   M + GL PN V F  L
Sbjct: 238 MEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGIL 297

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ID  CK        ++  AR+   +M   G+ P+ + +  L+DG+ K G+   A D+  E
Sbjct: 298 IDALCK------VRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLE 351

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M K  I  D   ++ LI   CR G V EA+ +L+ M K G+  +   Y  +ID +CK G+
Sbjct: 352 MEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGN 411

Query: 361 TKTGFRLLK------EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            +    + K      +MR +G  P    Y  ++ G      + +  ML   M+ +G+VP+
Sbjct: 412 MEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPN 471

Query: 415 DITYNILLEGHCKHG 429
           ++T  ++  G+  +G
Sbjct: 472 EVTSQVVRRGYQDNG 486



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 162/308 (52%), Gaps = 11/308 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++PSV  F VL+    + G + +A  V+    K G      + N L+NG  K  + D  +
Sbjct: 117 FNPSV--FGVLIIAFSEVGLVDEALRVY---LKVGAFPAVQACNALLNGLLKKSSFDIMW 171

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L + M    + P V TY+ L++  C++  +  A+ L+ EM ++G+ P  VI+TTLI G 
Sbjct: 172 ELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGL 231

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C   +      + EA  +  +M  +G+ P+  TY +L+DG+CK  +++ AL + + M+  
Sbjct: 232 CSESK------LMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDD 285

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G++ + V F  LI   C+  +++ A R   +M K G+ P+   +  +ID + K G+    
Sbjct: 286 GLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEA 345

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             LL EM      P V TY+ L+   C+ G ++ A+ +L  M   GV  + + YN L++G
Sbjct: 346 TDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDG 405

Query: 425 HCKHGNPE 432
           +CK GN E
Sbjct: 406 YCKEGNME 413



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 163/360 (45%), Gaps = 25/360 (6%)

Query: 108 NLPTVTLGFYLEILDYGYSPSVY---------VFNVLMHKLCKEGKIKDAQMVFDEFGK- 157
           N PT  L  Y  ++ Y     VY         +   L+   C   ++    +VF+   + 
Sbjct: 56  NNPTKKLHLYSAVIHYLTGAKVYPTARCLTKDLIQTLLQS-CTPRRVNS--LVFNALSQL 112

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           RG       F  LI    +   +DE  R   V    G  P V   +AL+NGL K++  D 
Sbjct: 113 RGSKFNPSVFGVLIIAFSEVGLVDEALR---VYLKVGAFPAVQACNALLNGLLKKSSFDI 169

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
              L + M  R L P  V +  L+D  C+ G      D+  A+ ++ EM   G+ P  + 
Sbjct: 170 MWELYNNMVSRRLFPTVVTYNVLVDACCRQG------DVLRAKSLISEMVKKGIEPTVVI 223

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L+ G C E  L  A  + ++M   G+  +   +  L+ G+C+   V +A  + + ML
Sbjct: 224 YTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGML 283

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             GL+P+  T+ ++ID  CK  +     R   +M   G +P V  +N+L++G  K G   
Sbjct: 284 DDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCS 343

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD---KLQSEKGLVSDYACYTSLV 454
            A  LL  M    + PD  TY+IL++  C+ G  E+ D   K   ++G+ ++   Y SL+
Sbjct: 344 EATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLI 403



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 115/217 (52%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y  +LD G  P+V  F +L+  LCK  ++  A+  F +  K G+    V FN+LI+
Sbjct: 275 ALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLID 334

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+ KA N  E   L   ME   + PDV+TYS LI   C+   +++A+ +L  M + G+  
Sbjct: 335 GYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPA 394

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V++ +LIDG+CK G ++ A ++ +A K   +M  NGL PD + Y ++L G      + 
Sbjct: 395 NSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMA 454

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
             + +  +MIK GI  + V    +  G+   G +  A
Sbjct: 455 DVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGYLKSA 491


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 179/345 (51%), Gaps = 17/345 (4%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y+++L+ G  PS+  FN +++ LCK+G++++A+++     +   +  A ++ +LI GHC+
Sbjct: 190 YIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCR 249

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             NLD  F +   M   G  P+  TYS LINGLC E RL++A  +L EM ++G+ P    
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYT 309

Query: 237 FT----TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +T    +L D  C +  +++ G MK+           G  P+  T+T L+ G  ++G  E
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKK----------RGCVPNIQTFTALISGLSRDGKFE 359

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ +  +M+  G+    V + ALI+  C  G+   A  + + ML  G  P   TY  +I
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            CFC  GD +    +  +M   G  P V TYN L+ G CK G L NA  LL+ M   G+ 
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 413 PDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           PD  TY  L+ G  + G  E    L     E G+  ++  YT+++
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 203/418 (48%), Gaps = 62/418 (14%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
           F + R+ +F+        +++R++R  L               ++P+ +V  +LM K C+
Sbjct: 99  FWISRRKFFKHDMSCFVSMLNRLVRDRL---------------FAPADHV-RILMIKSCR 142

Query: 142 -EGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
            EG++K       E   K     T  SF TL+    K   +D    +   M  SG+RP +
Sbjct: 143 NEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSL 202

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
            T++ +IN LCK+ R+ +A+L++  +      PN   +T+LI GHC+N  +D+A  M   
Sbjct: 203 LTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM--- 259

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE------------ 307
               D M  +G +P+ +TY+ L++G C EG LE A+D+ +EM+++GIE            
Sbjct: 260 ---FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 308 ----------------------LDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
                                 + N+  FTALISG  R GK   A  +  +ML  GL P 
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT 376

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  +I+  C  G  +T F + K M S G LP+ +TYN ++   C  G ++ A ++ D
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
            ML  G  P+ ITYN L+ G+CK GN  +  +L       GL  D   YT L+S  S+
Sbjct: 437 KMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 74/464 (15%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            YST+++ L +     +A D+L  +V K   G   +++   +               ++ 
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQK---GIEPTVYTYTIP--------------LVS 316

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEIL 121
             D G   +A++    ++K       RGC         LI  + R     + +G Y ++L
Sbjct: 317 LCDAGCSSEAVELLGKMKK-------RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369

Query: 122 DYGYSPSVYVFNVLMHKLCKEGK-----------------------------------IK 146
             G  P+   +N L+++LC EG+                                   I+
Sbjct: 370 ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQ 429

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
            A ++FD+  K G     +++NTLI G+CK  NL+   RL  +M+G+G++PD +TY+ LI
Sbjct: 430 KAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G  +  +L+ A  L + M E G++PN V +T +IDG+    ++D      +A  +  +M
Sbjct: 490 SGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVD------DALALFWKM 543

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
             +G  P   TY +++ GF K   +  A +   +M+K+G+  + + +T+ I G CR G+ 
Sbjct: 544 VESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRT 603

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG--FRLLKEMRSDGHLPAVETYN 384
             A ++  EM K    P+  TY+ +I   C+ G  +    + LL  +   G  P V+TY 
Sbjct: 604 GLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYT 663

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            L+ GLC  G+   A+ L+ +M   G+ P +  Y  LL G CK+
Sbjct: 664 TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKN 707



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 170/335 (50%), Gaps = 29/335 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   ++ L++ LC EG++++A  + +E  ++G+  T  ++   +   C A    E 
Sbjct: 267 GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEA 326

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+  G  P++ T++ALI+GL ++ + + A  L H+M   GL P  V +  LI+ 
Sbjct: 327 VELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQ 386

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            C  GR + A                             GD+++A  I D+M   G +P+
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPN 446

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ITY  L+ G+CK+G+L +A+ + + M   G++ D   +T LISGF RGGK+  A  +  
Sbjct: 447 VITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFY 506

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M++ G+ P+  TYT +ID +           L  +M   G+LP+ +TYN +++G  K  
Sbjct: 507 GMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTN 566

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +  A      M+  G++P+ ITY   ++G C++G
Sbjct: 567 SISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNG 601



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L +G  PS   +N ++   C  G I+ A ++FD+  K G     +++NTLI G+CK  N
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+   RL  +M+G+G++PD +TY+ LI+G  +  +L+ A  L + M E G++PN V +T 
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTA 522

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           +IDG+    ++D A                               + EA     +M   G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L P+ ITYT  +DG C+ G    A  I  EM KR    +   +++LI G C+ G+  +AE
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAE 642

Query: 331 --RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
              +L  +   G +P+  TYT ++   C  G      +L+  M+  G  P+ E Y AL+ 
Sbjct: 643 MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLI 702

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD---KLQSEKGLVS 445
           G CK+ ++++A  +  +M  LG       Y  L+   CK    E+     +   EK   S
Sbjct: 703 GECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNS 762

Query: 446 DYACYTSLV 454
           D   +T L+
Sbjct: 763 DEVAWTVLL 771



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 176/371 (47%), Gaps = 46/371 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  F  L+  L ++GK + A  ++ +    GL  T V++N LIN  C     +  
Sbjct: 337 GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETA 396

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F +   M   G  P   TY+ +I   C    +  A ++  +M + G +PN + + TLI G
Sbjct: 397 FTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYG 456

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G      ++  A ++++ M  NGL PD  TYT L+ GF + G LE A  +   M++
Sbjct: 457 YCKQG------NLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME 510

Query: 304 RGIELDNVAFTA-----------------------------------LISGFCRGGKVVE 328
            GI  ++V +TA                                   +ISGF +   + E
Sbjct: 511 HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISE 570

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           AE    +M+K GL P+  TYT  ID  C+NG T   F++  EM    + P + TY++L+ 
Sbjct: 571 AENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIY 630

Query: 389 GLCKHGQLKNANM--LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGL 443
           GLC+ G+ ++A M  LL  +   G  P+  TY  L++G C  G   + D+L     +KGL
Sbjct: 631 GLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGL 690

Query: 444 VSDYACYTSLV 454
                 Y +L+
Sbjct: 691 QPSEEIYRALL 701



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 146/303 (48%), Gaps = 11/303 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + ++++ G  PS   +NV++    K   I +A+    +  K+GL    +++ + I+G
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL--LLHEMCERGLT 231
            C+       F++   ME     P++YTYS+LI GLC+E R +DAE+  LL  +   G  
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCE 656

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN   +TTL+ G C  GR        EA ++V  M   GL P +  Y  LL G CK   +
Sbjct: 657 PNVDTYTTLVKGLCGEGRC------YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           ESAL+I   M   G +L    + ALI   C+   + EA+ + + ML+     D+  +T++
Sbjct: 711 ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVL 770

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +D   K G+T    +LL  M S       +TY  L   L     L  A  +      LG+
Sbjct: 771 LDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAREL---SALDCAIKIPQISQQLGI 827

Query: 412 VPD 414
           V D
Sbjct: 828 VKD 830


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 175/315 (55%), Gaps = 6/315 (1%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   + F  ++   G  P V  +N LM  LCK G+  +A+ +FD   KRGL     ++ T
Sbjct: 174 PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGT 233

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G+     L E   L  +M  +G+ P+ Y +S L+    K+ ++++A L+  +M ++G
Sbjct: 234 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 293

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN V +  +I   CK+GR++      +A    ++M   GL+P  I Y  L+ G C   
Sbjct: 294 LNPNAVTYGAVIGILCKSGRVE------DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 347

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             E A ++  EM+ RGI L+ + F ++I   C+ G+V+E+E++   M+++G+KPD  TY+
Sbjct: 348 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +ID +C  G      +LL  M S G  P   TY+ L+NG CK  ++K+A +L   M   
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESS 467

Query: 410 GVVPDDITYNILLEG 424
           GV PD ITYNI+L+G
Sbjct: 468 GVSPDIITYNIILQG 482



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 178/330 (53%), Gaps = 9/330 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ YVF++L+    K+ K+++A +VF +  ++GL+  AV++  +I   CK+  +++ 
Sbjct: 258 GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 317

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M   G+ P    Y++LI+GLC  N+ + AE L+ EM +RG+  N + F ++ID 
Sbjct: 318 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 377

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ PD ITY+ L+DG+C  G ++ A  +   M+ 
Sbjct: 378 HCKEGRV------IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS 431

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V ++ LI+G+C+  ++ +A  + REM   G+ PD  TY +++    +   T  
Sbjct: 432 VGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAA 491

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+    +A  +   +  + +  +  T+NI+++
Sbjct: 492 AKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMID 551

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACY 450
              K G  ++   L    S  GLV +Y  Y
Sbjct: 552 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 581



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 172/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  ++ +++   KEG +      ++E   + +    V++N++I   CKA+ +D+   +
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 145

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  SG+ PD  TY+++++G C   +  +A + L +M   G+ P+ V + +L+D  CK
Sbjct: 146 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 205

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NGR        EARKI D M   GL P+  TY  LL G+  +G L     +   M++ GI
Sbjct: 206 NGRC------TEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 259

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             ++  F+ L+  + +  KV EA  +  +M + GL P+  TY  VI   CK+G  +    
Sbjct: 260 HPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 319

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             ++M  +G  P    YN+L++GLC   + + A  L+  MLD G+  + I +N +++ HC
Sbjct: 320 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 379

Query: 427 KHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           K G   + +K   L    G+  D   Y++L+
Sbjct: 380 KEGRVIESEKLFDLMVRIGVKPDIITYSTLI 410



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 177/371 (47%), Gaps = 34/371 (9%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T   Y E+LD   SP+V  +N ++  LCK   +  A  V     K G+    +++N++++
Sbjct: 107 TYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVH 166

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C +    E       M   G+ PDV TY++L++ LCK  R  +A  +   M +RGL P
Sbjct: 167 GFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKP 226

Query: 233 NDVIFTTLIDGHCKNGR-IDMAG----------------------------DMKEARKIV 263
               + TL+ G+   G  ++M G                             ++EA  + 
Sbjct: 227 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVF 286

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            +M   GLNP+ +TY  ++   CK G +E A+   ++MI  G+   N+ + +LI G C  
Sbjct: 287 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 346

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            K   AE ++ EML  G+  +   +  +ID  CK G      +L   M   G  P + TY
Sbjct: 347 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 406

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQS 439
           + L++G C  G++  A  LL +M+ +G+ PD +TY+ L+ G+CK    +D    F +++S
Sbjct: 407 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMES 466

Query: 440 EKGLVSDYACY 450
             G+  D   Y
Sbjct: 467 -SGVSPDIITY 476



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 208/440 (47%), Gaps = 26/440 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE----------------- 51
            Y++++ +L  +   ++AR +   + +K+G+    + + ++L+                 
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 253

Query: 52  --TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
               G H    V   L+  Y     +++A+  F  +R+      A     +I  + ++  
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
               + ++ +++D G SP   V+N L+H LC   K + A+ +  E   RG+    + FN+
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 373

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+ HCK   + E  +L  +M   G++PD+ TYS LI+G C   ++D+A  LL  M   G
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 433

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           + P+ V ++TLI+G+CK  R      MK+A  +  EM ++G++PD ITY I+L G  +  
Sbjct: 434 MKPDCVTYSTLINGYCKISR------MKDALVLFREMESSGVSPDIITYNIILQGLFQTR 487

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
              +A ++   + K G +L+   +  ++ G C+     +A RM + +  + LK +  T+ 
Sbjct: 488 RTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFN 547

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++ID   K G       L     S+G +P   TY  +   +   G L+  + L  +M D 
Sbjct: 548 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 607

Query: 410 GVVPDDITYNILLEGHCKHG 429
           G   D    N ++    + G
Sbjct: 608 GCTVDSGMLNFIVRELLQRG 627



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 166/348 (47%), Gaps = 35/348 (10%)

Query: 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM--EGSGMRPDVYTYS 203
           +DA+ VFDE  +RG+     S+N L+NG C      E   L  +M  +G    PDV +YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
            +ING  KE  LD      +EM ++ ++PN V + ++I   CK   +D A          
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              G  KEA   + +M ++G+ PD +TY  L+D  CK G    A
Sbjct: 153 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 212

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             I   M KRG++ +   +  L+ G+   G +VE   +L  M++ G+ P+   +++++  
Sbjct: 213 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 272

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           + K    +    +  +MR  G  P   TY A++  LCK G++++A +  + M+D G+ P 
Sbjct: 273 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 332

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           +I YN L+ G C     E  ++L  E   +G+  +   + S++    K
Sbjct: 333 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 380



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 146/291 (50%), Gaps = 7/291 (2%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+LD G   +   FN ++   CKEG++ +++ +FD   + G+    ++++TLI+G+C A
Sbjct: 357 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 416

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +DE  +L + M   GM+PD  TYS LING CK +R+ DA +L  EM   G++P+ + +
Sbjct: 417 GKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITY 476

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             ++ G  +  R         A+++   +  +G   +  TY I+L G CK    + AL +
Sbjct: 477 NIILQGLFQTRRT------AAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRM 530

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            + +    ++L+   F  +I    + G+  EA+ +       GL P+  TY ++ +    
Sbjct: 531 FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 590

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            G  +   +L   M  +G        N ++  L + G++  A   L +M+D
Sbjct: 591 QGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL-SMID 640



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 42/282 (14%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  ++ L+   C  GK+ +A  +       G+    V+++TLING+CK   + + 
Sbjct: 398 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDA 457

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENR-------------------LDDAELLLHE 224
             L   ME SG+ PD+ TY+ ++ GL +  R                   L    ++LH 
Sbjct: 458 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHG 517

Query: 225 MCERGLTPNDV----------------IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           +C+  LT + +                 F  +ID   K GR D      EA+ +     +
Sbjct: 518 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRND------EAKDLFVAFSS 571

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           NGL P+  TY ++ +    +G LE    +   M   G  +D+     ++    + G++  
Sbjct: 572 NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITR 631

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           A   L  + +     + +T ++ ID     G  +   R L E
Sbjct: 632 AGTYLSMIDEKHFSLEASTASLFID-LLSGGKYQEYHRFLPE 672



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 1/216 (0%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M  +  L AS++   G     +    L+  Y  +  + DA+  FR +             
Sbjct: 419 MDEATKLLASMVSV-GMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYN 477

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++  + +T         Y+ I   G    +  +N+++H LCK     DA  +F      
Sbjct: 478 IILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLM 537

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            L   A +FN +I+   K    DE   L      +G+ P+ +TY  +   +  +  L++ 
Sbjct: 538 DLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEEL 597

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + L   M + G T +  +   ++    + G I  AG
Sbjct: 598 DQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAG 633


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 188/372 (50%), Gaps = 7/372 (1%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G  D+A +    +R   F+  A     +I+ + + N          ++  Y   P    
Sbjct: 58  VGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALT 116

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  ++ +LCK  +I DA    +E   RG+   A  +N +++G C+ + ++E   L   M 
Sbjct: 117 YGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMV 176

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
              + P+V TY+ LINGLCK  R++ A  L  EM  +G  P +V + TLIDG CK     
Sbjct: 177 KQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKK--- 233

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
              D+  A+ + D+M  +   P+ +TYT L+DG  K G +++A ++   M+K+G+  +  
Sbjct: 234 ---DLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVA 290

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++ LI GFC+  +V EA ++L +M+  G+ P   TY ++++  C+    +  F+L + M
Sbjct: 291 TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 350

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                 P V TYN L+  LC H QL  A+ L   M+  G  PD ITY+ L  G  + G  
Sbjct: 351 AQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKV 410

Query: 432 EDFDKLQSEKGL 443
            +  +L  +  L
Sbjct: 411 HEAQELMEKMKL 422



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 179/325 (55%), Gaps = 10/325 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           ++ +++ LCK  ++++A+ + ++   R     A+++  ++   CK K +D+       M 
Sbjct: 83  YSTIINWLCKLNRVEEARELIEKMA-RYAPPDALTYGPIVERLCKTKRIDDALATVEEMA 141

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G++PD + Y+ +++GLC+E ++++A LL  +M ++ + PN V + TLI+G CK  RI+
Sbjct: 142 TRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIE 201

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A ++        EM   G  P +++Y  L+DGFCK+ DL +A D+  +M++     + V
Sbjct: 202 TAYEL------FKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVV 255

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LI G  + GKV  A  +L  M+K G+ P+ ATY+ +ID FCK        +LL++M
Sbjct: 256 TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM 315

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            + G  P V TYN L+N LC+  +L++A  L   M      P  +TYN LL   C H   
Sbjct: 316 VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQL 375

Query: 432 EDFDKLQSE---KGLVSDYACYTSL 453
           +   +L +E   KG   D   Y +L
Sbjct: 376 DGAHRLYAEMIAKGCPPDAITYDTL 400



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 168/321 (52%), Gaps = 7/321 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y  +++ GY+     + +L+  LCK G   +A  +      +     A++++T+IN  CK
Sbjct: 33  YQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCK 92

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              ++E   L   M      PD  TY  ++  LCK  R+DDA   + EM  RG+ P+  I
Sbjct: 93  LNRVEEARELIEKM-ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFI 151

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +  ++ G C+  +++      EAR + ++M    +NP+ +TY  L++G CK   +E+A +
Sbjct: 152 YNFVLSGLCQEEKVE------EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYE 205

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + KEM  +G     V++  LI GFC+   +V A+ +  +M++    P+  TYT +ID   
Sbjct: 206 LFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLS 265

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K+G  +    +L  M   G  P V TY+ L++G CK  ++  A+ LL+ M+  G+ P  +
Sbjct: 266 KSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVV 325

Query: 417 TYNILLEGHCKHGNPEDFDKL 437
           TYNILL   C+    ED  KL
Sbjct: 326 TYNILLNSLCRADKLEDAFKL 346



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 166/332 (50%), Gaps = 10/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    FN +     K G+++  + V+    + G    A  +  LI+  CK  N DE ++L
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M     +     YS +IN LCK NR+++A  L+ +M  R   P+ + +  +++  CK
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA-RYAPPDALTYGPIVERLCK 126

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             RID      +A   V+EM T G+ PD   Y  +L G C+E  +E A  + ++M+K+ I
Sbjct: 127 TKRID------DALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V +  LI+G C+  ++  A  + +EM   G  P + +Y  +ID FCK  D      
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKD 240

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +  +M     +P V TY  L++GL K G+++ A  +LD M+  GV P+  TY+ L++G C
Sbjct: 241 VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC 300

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           K    ++  KL  +   +G+      Y  L++
Sbjct: 301 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLN 332



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 122/304 (40%), Gaps = 66/304 (21%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDM-----------------------------AGD 255
           M  R + P    F T+ DG  K GR++                               G+
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES---------------------- 293
             EA K++  M         I Y+ +++  CK   +E                       
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPI 120

Query: 294 ------------ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
                       AL   +EM  RGI+ D   +  ++SG C+  KV EA  +  +M+K  +
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P+  TY  +I+  CK    +T + L KEM   G++P   +YN L++G CK   L  A  
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKD 240

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSS 458
           + D M+    VP+ +TY  L++G  K G  +   ++     +KG+  + A Y+ L+    
Sbjct: 241 VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC 300

Query: 459 KYRQ 462
           K R+
Sbjct: 301 KVRR 304


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 179/345 (51%), Gaps = 17/345 (4%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y+++L+ G  PS+  FN +++ LCK+G++++A+++     +   +  A ++ +LI GHC+
Sbjct: 190 YIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCR 249

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             NLD  F +   M   G  P+  TYS LINGLC E RL++A  +L EM ++G+ P    
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYT 309

Query: 237 FT----TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +T    +L D  C +  +++ G MK+           G  P+  T+T L+ G  ++G  E
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKK----------RGCVPNIQTFTALISGLSRDGKFE 359

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ +  +M+  G+    V + ALI+  C  G+   A  + + ML  G  P   TY  +I
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            CFC  GD +    +  +M   G  P V TYN L+ G CK G L NA  LL+ M   G+ 
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 413 PDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           PD  TY  L+ G  + G  E    L     E G+  ++  YT+++
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 203/418 (48%), Gaps = 62/418 (14%)

Query: 82  FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
           F + R+ +F+        +++R++R  L               ++P+ +V  +LM K C+
Sbjct: 99  FWISRRKFFKHDMSCFVSMLNRLVRDRL---------------FAPADHV-RILMIKSCR 142

Query: 142 -EGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
            EG++K       E   K     T  SF TL+    K   +D    +   M  SG+RP +
Sbjct: 143 NEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSL 202

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
            T++ +IN LCK+ R+ +A+L++  +      PN   +T+LI GHC+N  +D+A  M   
Sbjct: 203 LTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM--- 259

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE------------ 307
               D M  +G +P+ +TY+ L++G C EG LE A+D+ +EM+++GIE            
Sbjct: 260 ---FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 308 ----------------------LDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
                                 + N+  FTALISG  R GK   A  +  +ML  GL P 
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT 376

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  +I+  C  G  +T F + K M S G LP+ +TYN ++   C  G ++ A ++ D
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
            ML  G  P+ ITYN L+ G+CK GN  +  +L       GL  D   YT L+S  S+
Sbjct: 437 KMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 219/464 (47%), Gaps = 74/464 (15%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            YST+++ L +     +A D+L  +V +KG+  +   +          +P       ++ 
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMV-QKGIEPTVYTYT---------IP-------LVS 316

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEIL 121
             D G   +A++    ++K       RGC         LI  + R     + +G Y ++L
Sbjct: 317 LCDAGCSSEAVELLGKMKK-------RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369

Query: 122 DYGYSPSVYVFNVLMHKLCKEGK-----------------------------------IK 146
             G  P+   +N L+++LC EG+                                   I+
Sbjct: 370 ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQ 429

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
            A ++FD+  K G     +++NTLI G+CK  NL+   RL  +M+G+G++PD +TY+ LI
Sbjct: 430 KAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G  +  +L+ A  L + M E G++PN V +T +IDG+    ++D      +A  +  +M
Sbjct: 490 SGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVD------DALALFWKM 543

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
             +G  P   TY +++ GF K   +  A +   +M+K+G+  + + +T+ I G CR G+ 
Sbjct: 544 VESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRT 603

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG--FRLLKEMRSDGHLPAVETYN 384
             A ++  EM K    P+  TY+ +I   C+ G  +    + LL  +   G  P V+TY 
Sbjct: 604 GLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYT 663

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            L+ GLC  G+   A+ L+ +M   G+ P +  Y  LL G CK+
Sbjct: 664 TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKN 707



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 170/335 (50%), Gaps = 29/335 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   ++ L++ LC EG++++A  + +E  ++G+  T  ++   +   C A    E 
Sbjct: 267 GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEA 326

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+  G  P++ T++ALI+GL ++ + + A  L H+M   GL P  V +  LI+ 
Sbjct: 327 VELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQ 386

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            C  GR + A                             GD+++A  I D+M   G +P+
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPN 446

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ITY  L+ G+CK+G+L +A+ + + M   G++ D   +T LISGF RGGK+  A  +  
Sbjct: 447 VITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFY 506

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M++ G+ P+  TYT +ID +           L  +M   G+LP+ +TYN +++G  K  
Sbjct: 507 GMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTN 566

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +  A      M+  G++P+ ITY   ++G C++G
Sbjct: 567 SISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNG 601



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L +G  PS   +N ++   C  G I+ A ++FD+  K G     +++NTLI G+CK  N
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+   RL  +M+G+G++PD +TY+ LI+G  +  +L+ A  L + M E G++PN V +T 
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTA 522

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           +IDG+    ++D A                               + EA     +M   G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L P+ ITYT  +DG C+ G    A  I  EM KR    +   +++LI G C+ G+  +AE
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAE 642

Query: 331 --RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
              +L  +   G +P+  TYT ++   C  G      +L+  M+  G  P+ E Y AL+ 
Sbjct: 643 MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLI 702

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD---KLQSEKGLVS 445
           G CK+ ++++A  +  +M  LG       Y  L+   CK    E+     +   EK   S
Sbjct: 703 GECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNS 762

Query: 446 DYACYTSLV 454
           D   +T L+
Sbjct: 763 DEVVWTVLL 771



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 176/371 (47%), Gaps = 46/371 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  F  L+  L ++GK + A  ++ +    GL  T V++N LIN  C     +  
Sbjct: 337 GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETA 396

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F +   M   G  P   TY+ +I   C    +  A ++  +M + G +PN + + TLI G
Sbjct: 397 FTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYG 456

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G      ++  A ++++ M  NGL PD  TYT L+ GF + G LE A  +   M++
Sbjct: 457 YCKQG------NLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME 510

Query: 304 RGIELDNVAFTA-----------------------------------LISGFCRGGKVVE 328
            GI  ++V +TA                                   +ISGF +   + E
Sbjct: 511 HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISE 570

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           AE    +M+K GL P+  TYT  ID  C+NG T   F++  EM    + P + TY++L+ 
Sbjct: 571 AENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIY 630

Query: 389 GLCKHGQLKNANM--LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGL 443
           GLC+ G+ ++A M  LL  +   G  P+  TY  L++G C  G   + D+L     +KGL
Sbjct: 631 GLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGL 690

Query: 444 VSDYACYTSLV 454
                 Y +L+
Sbjct: 691 QPSEEIYRALL 701



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 146/303 (48%), Gaps = 11/303 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + ++++ G  PS   +NV++    K   I +A+    +  K+GL    +++ + I+G
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL--LLHEMCERGLT 231
            C+       F++   ME     P++YTYS+LI GLC+E R +DAE+  LL  +   G  
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCE 656

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN   +TTL+ G C  GR        EA ++V  M   GL P +  Y  LL G CK   +
Sbjct: 657 PNVDTYTTLVKGLCGEGRC------YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           ESAL+I   M   G +L    + ALI   C+   + EA+ + + ML+     D+  +T++
Sbjct: 711 ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVL 770

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +D   K G+T    +LL  M S       +TY  L   L     L  A  +      LG+
Sbjct: 771 LDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAREL---SALDCAIKIPQISQQLGI 827

Query: 412 VPD 414
           V D
Sbjct: 828 VKD 830


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 225/463 (48%), Gaps = 39/463 (8%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSS---ASLFASILETRG--T 55
           P  + +L +   M+  L  HK    A  LL  +  ++ + S     SL   + E     +
Sbjct: 74  PSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDPEDVS 133

Query: 56  HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           H    V   LMI Y   G ++D+I  F  +R    +   + C  L++ +++  L      
Sbjct: 134 H----VFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWK 189

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + +++  G   +++V+NVL+H   K G  + A+ +  E  ++G+     ++NTLI+ +C
Sbjct: 190 IFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYC 249

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K     E   ++  ME SG+ P++ TY++ I+G  +E R+ +A  L  E+ +  +T N V
Sbjct: 250 KKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREI-KDDVTANHV 308

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
            +TTLIDG+C+   ID A                             G ++EA +++ EM
Sbjct: 309 TYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEM 368

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
               + PD IT   L++ +CK  D+ SA+ ++K+MI+ G++LD  ++ ALI GFC+  ++
Sbjct: 369 SGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLEL 428

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A+  L  M++ G  P  ATY+ ++D F          +LL+E    G    V  Y  L
Sbjct: 429 ENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGL 488

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +  +CK  Q+  A +L ++M   G+V D + +  +   + + G
Sbjct: 489 IRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTG 531



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 34/294 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P++  +N  +H   +EG++++A  +F E  K  + A  V++ TLI+G+C+  ++DE 
Sbjct: 268 GVAPNIVTYNSFIHGFSREGRMREATRLFREI-KDDVTANHVTYTTLIDGYCRMNDIDEA 326

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL+ VME  G  P V TY++++  LC++ R+ +A  LL EM  + + P+++   TLI+ 
Sbjct: 327 LRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINA 386

Query: 244 HCKNGRIDMAGDMKEARKIVDE-------------------------------MCTNGLN 272
           +CK    DM   +K  +K+++                                M   G +
Sbjct: 387 YCKIE--DMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFS 444

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P   TY+ L+DGF  +   +    + +E  KRG+  D   +  LI   C+  +V  A+ +
Sbjct: 445 PGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVL 504

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
              M K GL  D   +T +   + + G       L   M +   +  ++ Y ++
Sbjct: 505 FESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSI 558



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 6/238 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+SP V  +N ++ KLC++G+I++A  +  E   + +    ++ NTLIN +CK +++   
Sbjct: 337 GFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSA 396

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++K  M  SG++ D+Y+Y ALI+G CK   L++A+  L  M E+G +P    ++ L+DG
Sbjct: 397 VKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDG 456

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                + D      E  K+++E    GL  D   Y  L+   CK   ++ A  + + M K
Sbjct: 457 FYNQNKQD------EITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEK 510

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +G+  D+V FT +   + R GKV EA  +   M    L  +   Y  +   +  + D 
Sbjct: 511 KGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSISASYAGDNDV 568



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 54/123 (43%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             +++ G+SP    ++ L+     + K  +   + +EF KRGL A    +  LI   CK 
Sbjct: 436 FSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKL 495

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + +D    L   ME  G+  D   ++ +     +  ++ +A  L   M  R L  N  ++
Sbjct: 496 EQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLY 555

Query: 238 TTL 240
            ++
Sbjct: 556 KSI 558


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 184/344 (53%), Gaps = 9/344 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G SP+VY +++++H LC+ G+ + A  + +E   +GL   A  +  LI+G+C+  
Sbjct: 422 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 481

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+     +   M    + PD+Y Y++LI GL K  R++++     +M ERGL PN+  ++
Sbjct: 482 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 541

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G+ KNG      D++ A ++V  M   GL P+ + Y  LL+ + K  D+E      
Sbjct: 542 GLIHGYLKNG------DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 595

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M+ +G+ LDN  +  LI      G +  A R+L  + K G  PD   Y+ +I   CK 
Sbjct: 596 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKT 655

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            D +  F +L EM   G  P +  YNAL++GLCK G +  A  + +++L  G+VP+ +TY
Sbjct: 656 ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 715

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
             L++G CK G+  +   L +E    G+  D   Y+ L +  S 
Sbjct: 716 TSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSS 759



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 217/435 (49%), Gaps = 38/435 (8%)

Query: 36  KKGMGSSASLFASILE---TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           + G GS  S+    +E    RG H  G  L+A    Y  +   D A +    +R+     
Sbjct: 202 RSGHGSQHSVLQRAVEGSAARGRH--GSALEA----YCKVREFDTAKKVLVEMRE----- 250

Query: 93  PARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145
             RGC         LI  + R+       GF  ++ DYG  P  + +  L++ LCK  + 
Sbjct: 251 --RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 308

Query: 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
            +A+ + DE     L    V +  LI+G  +  N DE F++   M  +G++P+  TY  L
Sbjct: 309 NEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 368

Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
           + GLCK  ++D A LLL +M      P+ + +  +I+GH ++         K+A +++ E
Sbjct: 369 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHH------SKKDAFRLLSE 422

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   G++P+  TY+I++ G C+ G+ E A D+ +EM  +G++ +   +  LISG+CR G 
Sbjct: 423 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 482

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V  A  +  +M KV + PD   Y  +I    K G  +   +   +M+  G LP   TY+ 
Sbjct: 483 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 542

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS------ 439
           L++G  K+G L++A  L+  MLD G+ P+D+ Y  LLE + K    +D +K+ S      
Sbjct: 543 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS---DDIEKVSSTFKSML 599

Query: 440 EKGLVSDYACYTSLV 454
           ++G++ D   Y  L+
Sbjct: 600 DQGVMLDNRIYGILI 614



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 170/315 (53%), Gaps = 17/315 (5%)

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           Q   +    RG H +A      +  +CK +  D   ++   M   G   +  TY+ LI G
Sbjct: 213 QRAVEGSAARGRHGSA------LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 266

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC+   +++A     +M + GL P+   +  LI+G CK+ R +      EA+ ++DEM  
Sbjct: 267 LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSN------EAKALLDEMSC 320

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             L P+ + Y  L+DGF +EG+ + A  + KEM+  G++ + + +  L+ G C+ G++  
Sbjct: 321 AELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDR 380

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L++M++   +PD  TY ++I+   ++   K  FRLL EM + G  P V TY+ +++
Sbjct: 381 ASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIH 440

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLV 444
           GLC+ G+ + A+ LL+ M   G+ P+   Y  L+ G+C+ GN     E FDK+ ++  ++
Sbjct: 441 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKVNVL 499

Query: 445 SDYACYTSLVSKSSK 459
            D  CY SL+   SK
Sbjct: 500 PDLYCYNSLIFGLSK 514



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 202/424 (47%), Gaps = 26/424 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           ++ YS M+H L       +A DLL  + +K G+  +A ++A ++                
Sbjct: 432 VYTYSIMIHGLCQSGEPEKASDLLEEMTTK-GLKPNAFVYAPLISG-------------- 476

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-RCLIDRMMRTNLPTVTLGFYLEILDYGY 125
             Y   G +  A + F  + K    +P   C   LI  + +      +  ++ ++ + G 
Sbjct: 477 --YCREGNVSLACEIFDKMTKVNV-LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 533

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+ + ++ L+H   K G ++ A+ +       GL    V +  L+  + K+ ++++   
Sbjct: 534 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 593

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G+  D   Y  LI+ L     ++ A  +L  + + G  P+  ++++LI G C
Sbjct: 594 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLC 653

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K        D ++A  I+DEM   G++P+ + Y  L+DG CK GD+  A ++   ++ +G
Sbjct: 654 KT------ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 707

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V +T+LI G C+ G +  A  +  EML  G+ PD   Y+++       GD +   
Sbjct: 708 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 767

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L++EM   GH  ++ ++N L++G CK G+++    LL  ++  G+VP+ +T   ++ G 
Sbjct: 768 FLIEEMFLRGH-ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 826

Query: 426 CKHG 429
            + G
Sbjct: 827 SEAG 830



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 152/314 (48%), Gaps = 24/314 (7%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +LD G      ++ +L+H L   G ++ A  V     K G       +++LI+G CK
Sbjct: 595 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 654

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             + ++ F +   M   G+ P++  Y+ALI+GLCK   +  A  + + +  +GL PN V 
Sbjct: 655 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 714

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T+LIDG CK       GD+  A  + +EM   G+ PD   Y++L  G    GDLE A+ 
Sbjct: 715 YTSLIDGSCK------VGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMF 768

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM  RG      +F  L+ GFC+ GK+ E  ++L  ++  GL P+  T   +I    
Sbjct: 769 LIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLS 827

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           + G       +  E++      A   +++L                +D M++ G +P D+
Sbjct: 828 EAGKLSEVHTIFVELQQKTSESAARHFSSL---------------FMD-MINQGKIPLDV 871

Query: 417 TYNILLEGHCKHGN 430
             +++ + HCK GN
Sbjct: 872 VDDMIRD-HCKEGN 884



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 25/296 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +T       G   E+   G  P++  +N L+  LCK G I  A+ VF+    +G
Sbjct: 648 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 707

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V++ +LI+G CK  ++   F L + M  +G+ PD + YS L  G      L+ A 
Sbjct: 708 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 767

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ EM  RG       F  L+DG CK G+      M+E  K++  +   GL P+ +T  
Sbjct: 768 FLIEEMFLRGHASISS-FNNLVDGFCKRGK------MQETLKLLHVIMGRGLVPNALTIE 820

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV------------- 326
            ++ G  + G L     I  E+ ++  E     F++L       GK+             
Sbjct: 821 NIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHC 880

Query: 327 ----VEAERMLREMLKVGLKPDD-ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
               ++   MLR+++     P   ++Y  ++D  C+ G       LLKEM   G+L
Sbjct: 881 KEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNL 936


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 178/334 (53%), Gaps = 6/334 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+     N          +IL  G+ P    F  L+  LC EGKI +A  +FD+    G
Sbjct: 97  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 156

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++ TLING CK  N     RL   ME    +PDV  Y+++I+ LCK+ ++ +A 
Sbjct: 157 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 216

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M  +G++P+   +T+L+   C         + K    ++++M  + + PD + ++
Sbjct: 217 NLFSQMVGQGISPDIFTYTSLVHALCN------LCEWKHVTTLLNQMVNSKILPDVVIFS 270

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CKEG +  A +I   MI+RG+E D V +T L+ G C   ++ EA ++   M++ 
Sbjct: 271 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 330

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD  +YT +I+ +CK         L +EM     +P  +TYN LM+GLC  G+L++A
Sbjct: 331 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDA 390

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
             L   M+  G +PD +TY+ILL+  CK+ + E+
Sbjct: 391 IALFHEMVARGQMPDLVTYSILLDSLCKNCHLEE 424



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 177/358 (49%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    T     + +++  G SP ++ +  L+H LC   + K    + ++     
Sbjct: 202 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 261

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V F+T+++  CK   + E   +  +M   G+ PDV TY+ L++G C ++ +D+A 
Sbjct: 262 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  P+ + +TTLI+G+CK  +ID      +A  + +EMC     PD  TY 
Sbjct: 322 KVFDMMVRKGFAPDVISYTTLINGYCKIHKID------KAMYLFEEMCRKEWIPDTKTYN 375

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C  G L+ A+ +  EM+ RG   D V ++ L+   C+   + EA  +L+ +   
Sbjct: 376 TLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEAS 435

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L PD   Y ++ID  C+ G+ +    L   + S G  P+V TYN +++GLCK G L  A
Sbjct: 436 NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEA 495

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           N L   M      PD  TYN +  G  ++       +L  E   +G  +D +  T LV
Sbjct: 496 NKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLV 553



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 163/343 (47%), Gaps = 41/343 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V +F+ ++  LCKEGK+ +A  + D   +RG+    V++ TL++GHC    +DE  ++
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M   G  PDV +Y+ LING CK +++D A  L  EMC +   P+   + TL+ G C 
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 247 NGRIDMA-------------GDMKEARKIVDEMCTN----------------GLNPDKIT 277
            GR+  A              D+     ++D +C N                 LNPD   
Sbjct: 384 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQV 443

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y I++DG C+ G+LE+A D+   +  +G+      +  +I G C+ G + EA ++  EM 
Sbjct: 444 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 503

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
                PD  TY  +   F +N +T    +LL+EM + G    V T   L+  L   G  +
Sbjct: 504 GNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGLDQ 563

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           ++  L+ ++L      DD  Y I +        PE FD L  E
Sbjct: 564 SSCFLMLSVLS----EDDRRYFIFI--------PEGFDLLGWE 594



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 160/314 (50%), Gaps = 9/314 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   F+         + V F  L+    K K+      L + M+  G+ P+VYT + 
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 96

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN  C  NR+  A  +L ++ + G  P+   FTTLI G C  G+I       EA  + D
Sbjct: 97  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIG------EALHLFD 150

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G  P+ +TY  L++G CK G+  +A+ + + M +   + D V +T++I   C+  
Sbjct: 151 KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDR 210

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +V EA  +  +M+  G+ PD  TYT ++   C   + K    LL +M +   LP V  ++
Sbjct: 211 QVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFS 270

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK---LQSEK 441
            +++ LCK G++  A+ ++D M+  GV PD +TY  L++GHC     ++  K   +   K
Sbjct: 271 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 330

Query: 442 GLVSDYACYTSLVS 455
           G   D   YT+L++
Sbjct: 331 GFAPDVISYTTLIN 344



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 140/301 (46%), Gaps = 6/301 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F  L+  + K         +  +    G+     + N LIN  C    +   F +
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + +   G +PD  T++ LI GLC E ++ +A  L  +M + G  PN V + TLI+G CK
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G+   A +++  M      PD + YT ++D  CK+  +  A ++  +M+ +GI
Sbjct: 174 ------VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGI 227

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T+L+   C   +      +L +M+   + PD   ++ V+D  CK G       
Sbjct: 228 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 287

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++  M   G  P V TY  LM+G C   ++  A  + D M+  G  PD I+Y  L+ G+C
Sbjct: 288 IVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC 347

Query: 427 K 427
           K
Sbjct: 348 K 348


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 186/346 (53%), Gaps = 41/346 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V+ + VL+  LC++GKI++A  V  +  K G+  + +++N LING+CK  
Sbjct: 326 EMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDG 385

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +   F L +VME    +P+V T++ L+ GLC+  +   A  LL  M + GL+P+ V + 
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYN 445

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LIDG C+ G +++A       K++  M +  L PD +T+T +++ FCK+G  + A    
Sbjct: 446 VLIDGLCREGHMNVA------YKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFL 499

Query: 299 KEMIKRGIELDNVAFTALISGFC-----------------------------------RG 323
             M+++GI LD V  T LI G C                                   +G
Sbjct: 500 GLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKG 559

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            K+ E   ML ++ K+GL P   TYT ++D   ++GD    FR+L+ M+  G LP V  Y
Sbjct: 560 CKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPY 619

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             ++NGLC+ G+++ A  LL  M D GV P+ +TY ++++G+  +G
Sbjct: 620 TIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNG 665



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 209/429 (48%), Gaps = 16/429 (3%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSK-----KGMGSSASLFASILETRGTHLPGLVLDALM- 66
           ++  +V+  +   A D++  ++ +     K M    S F  + E  G  L      +L+ 
Sbjct: 109 LLKLIVSSGLFRVAHDVIVALIRECSRCEKEMLKLISCFDELREVSGFRLNYPCYSSLLM 168

Query: 67  -IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
            +  +DLGFL  A   +R +    F +     R +++ + +         F  +IL  G+
Sbjct: 169 SLAKLDLGFL--AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGF 226

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGF 184
               ++   L+   C+   ++DA  VFD   + G  A  +VS++ LI+G C+   L+E F
Sbjct: 227 LLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAF 286

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            LK  M   G +P   TY+ LI  LC    +D A  L  EM  RG  PN   +T LIDG 
Sbjct: 287 GLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGL 346

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C++G+I+      EA  +  +M  +G+ P  ITY  L++G+CK+G +  A ++   M KR
Sbjct: 347 CRDGKIE------EANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
             + +   F  L+ G CR GK  +A  +L+ ML  GL PD  +Y ++ID  C+ G     
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVA 460

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           ++LL  M S    P   T+ A++N  CK G+   A+  L  ML  G+  D++T   L++G
Sbjct: 461 YKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520

Query: 425 HCKHGNPED 433
            C  G   D
Sbjct: 521 VCNVGKTRD 529



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 193/381 (50%), Gaps = 11/381 (2%)

Query: 79  IQCFRLLRK-HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
           I CF  LR+   FR+       L+  + + +L  +    Y  +   G+   +  +  +++
Sbjct: 144 ISCFDELREVSGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVN 203

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-R 196
            LCK G  + A+M   +  K G    +    +L+ G C+  NL +  ++  +M   G   
Sbjct: 204 ALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCA 263

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P+  +YS LI+GLC+  RL++A  L  +M E+G  P+   +T LI   C  G ID     
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID----- 318

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +A  + DEM   G  P+  TYT+L+DG C++G +E A  + ++M+K GI    + + AL
Sbjct: 319 -KAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNAL 377

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G+C+ G+VV A  +L  M K   KP+  T+  +++  C+ G       LLK M  +G 
Sbjct: 378 INGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGL 437

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---D 433
            P + +YN L++GLC+ G +  A  LL +M    + PD +T+  ++   CK G  +    
Sbjct: 438 SPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASA 497

Query: 434 FDKLQSEKGLVSDYACYTSLV 454
           F  L   KG+  D    T+L+
Sbjct: 498 FLGLMLRKGISLDEVTGTTLI 518



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 172/396 (43%), Gaps = 73/396 (18%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FN LM  LC+ GK   A  +       GL    VS+N LI+G C+  +++  ++L
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKL 463

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    + PD  T++A+IN  CK+ + D A   L  M  +G++ ++V  TTLIDG C 
Sbjct: 464 LTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCN 523

Query: 247 NGR--------------------------IDMAGD---MKEARKIVDEMCTNGLNPDKIT 277
            G+                          +DM      +KE   ++ ++   GL P  +T
Sbjct: 524 VGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVT 583

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L+DG  + GD+  +  + + M   G   +   +T +I+G C+ G+V EAE++L  M 
Sbjct: 584 YTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQ 643

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG-------- 389
             G+ P+  TYT+++  +  NG        ++ M   G+      Y++L+ G        
Sbjct: 644 DSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGI 703

Query: 390 --------------------------------LCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                                           LCK G+   +N L+ T+L  GV  +   
Sbjct: 704 RETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEK-A 762

Query: 418 YNILLEGHC---KHGNPEDFDKLQSEKGLVSDYACY 450
            +I++E +C   KH    +   L  + G V  +  +
Sbjct: 763 IDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSF 798



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 136/297 (45%), Gaps = 54/297 (18%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            NV++  L K  K+K+   +  +  K GL  + V++ TL++G  ++ ++   FR+  +M+
Sbjct: 549 LNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMK 608

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            SG  P+VY Y+ +INGLC+  R+++AE LL  M + G++PN V +T ++ G+  NG++D
Sbjct: 609 LSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLD 668

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF-------------------------- 285
                  A + V  M   G   +   Y+ LL GF                          
Sbjct: 669 ------RALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLG 722

Query: 286 --------------CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
                         CKEG  + +  + + ++K G+ L+  A   ++  +C   K  +   
Sbjct: 723 GSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEK-AIDIIMESYCSKKKHTKCVE 781

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM-------RSDGHLPAVE 381
           ++  +LK G  P   ++ +VI    K GDT+    L+ E+          G LP VE
Sbjct: 782 LITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVVEKSGVLPYVE 838



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 159/354 (44%), Gaps = 48/354 (13%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+   +     V   F   +L  G S        L+  +C  GK +DA  + +   K  
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMR 541

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +  T  S N +++   K   L E   +   +   G+ P V TY+ L++GL +   +  + 
Sbjct: 542 MLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSF 601

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L  M   G  PN   +T +I+G C+ GR++      EA K++  M  +G++P+ +TYT
Sbjct: 602 RMLELMKLSGCLPNVYPYTIIINGLCQFGRVE------EAEKLLSAMQDSGVSPNHVTYT 655

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF------------------- 320
           +++ G+   G L+ AL+  + M++RG EL++  +++L+ GF                   
Sbjct: 656 VMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELI 715

Query: 321 ---------------------CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
                                C+ G+  E+  +++ +LK G+  + A   ++++ +C   
Sbjct: 716 SVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEKAI-DIIMESYCSKK 774

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTMLDLGVV 412
                  L+  +   G +P+ +++  ++ GL K G  + A  ++++ +   GVV
Sbjct: 775 KHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVV 828


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 176/326 (53%), Gaps = 14/326 (4%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G +P V  FN L++ LC EG++ +A  + ++   +GLH   V++ T++NG CK  +
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 L S ME + ++PDV  YSA+I+ LCK+    DA+ L  EM E+G+ PN   +  
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +IDG C  GR        +A++++ +M    +NPD +T+  L+    KEG L  A  +  
Sbjct: 121 MIDGFCSFGR------WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCD 174

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM+ R I  D V + ++I GFC+  +  +A+ M   M      PD  T+  +ID +C+  
Sbjct: 175 EMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAK 230

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               G +LL+E+   G +    TYN L++G C+   L  A  L   M+  GV PD IT N
Sbjct: 231 RVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCN 290

Query: 420 ILLEGHCKHGNPED----FDKLQSEK 441
           ILL G C++   E+    F+ +Q  K
Sbjct: 291 ILLYGFCENEKLEEALELFEVIQMSK 316



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 172/341 (50%), Gaps = 10/341 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +IDR+ +    +     + E+L+ G +P+V+ +N ++   C  G+  DAQ +  +  +R 
Sbjct: 86  IIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE 145

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++   ++FN LI+   K   L E  +L   M    + PD  TY+++I G CK NR DDA+
Sbjct: 146 INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAK 205

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M     +P+ V F T+ID +C+  R+D      E  +++ E+   GL  +  TY 
Sbjct: 206 HMFDLMA----SPDVVTFNTIIDVYCRAKRVD------EGMQLLREISRRGLVANTTTYN 255

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC+  +L +A D+ +EMI  G+  D +    L+ GFC   K+ EA  +   +   
Sbjct: 256 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 315

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +  D   Y ++I   CK       + L   +   G  P V+TYN +++G C    + +A
Sbjct: 316 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 375

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N+L   M D G  PD+ TYN L+ G  K G  +   +L SE
Sbjct: 376 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE 416



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 3/196 (1%)

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P  IT+  L++G C EG +  A  +  +M+ +G+ +D V +  +++G C+ G    A
Sbjct: 5   GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 64

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +L +M +  +KPD   Y+ +ID  CK+G       L  EM   G  P V TYN +++G
Sbjct: 65  LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 124

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
            C  G+  +A  LL  M++  + PD +T+N L+    K G   + +KL  E   + +  D
Sbjct: 125 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 184

Query: 447 YACYTSLVSKSSKYRQ 462
              Y S++    K+ +
Sbjct: 185 TVTYNSMIYGFCKHNR 200


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 177/321 (55%), Gaps = 8/321 (2%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +T GF +  +IL  GY P     N L+  LC +G++K A    D+   +G     VS+ T
Sbjct: 110 ITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYAT 169

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     +    ++G   +PDV  Y+ +I+ +CK   + +A  L  EM  +G
Sbjct: 170 LINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKG 229

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++ + V + TLI G C      + G +KEA  +++EM    +NP+  TY IL+D  CKEG
Sbjct: 230 ISADVVTYNTLIYGFC------IVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A  +   M+K  ++ D + ++ L+ G+    +V +A+ +   M  +G+ PD  TYT
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I+ FCKN        L KEM     +P + TY++L++GLCK G++     L+D M D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 410 GVVPDDITYNILLEGHCKHGN 430
           G   D ITY+ L++G CK+G+
Sbjct: 404 GQPADVITYSSLIDGLCKNGH 424



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 174/307 (56%), Gaps = 6/307 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V ++N ++  +CK   + +A  +F E   +G+ A  V++NTLI G C    L E   L
Sbjct: 197 PDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGL 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    + P+VYTY+ L++ LCKE ++ +A+ +L  M +  + P+ + ++TL+DG+  
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF- 315

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                +  ++K+A+ + + M   G+ PD  TYTIL++GFCK   ++ AL++ KEM ++ +
Sbjct: 316 -----LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               V +++LI G C+ G++     ++ EM   G   D  TY+ +ID  CKNG       
Sbjct: 371 VPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIA 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  +M+     P + T+  L++GLCK G+LK+A  +   +L  G   +  TYN+++ GHC
Sbjct: 431 LFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHC 490

Query: 427 KHGNPED 433
           K G  E+
Sbjct: 491 KQGLLEE 497



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 167/300 (55%), Gaps = 6/300 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   E++    +P+VY +N+L+  LCKEGK+K+A+ V     K  +    ++++TL++
Sbjct: 253 AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+     + +   + + M   G+ PDV+TY+ LING CK   +D+A  L  EM ++ + P
Sbjct: 313 GYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
             V +++LIDG CK+GRI    D+      +DEM   G   D ITY+ L+DG CK G L+
Sbjct: 373 GIVTYSSLIDGLCKSGRISYVWDL------IDEMRDRGQPADVITYSSLIDGLCKNGHLD 426

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ +  +M  + I  +   FT L+ G C+GG++ +A+ + +++L  G   +  TY ++I
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  CK G  +    +L +M  +G +P   T+  ++  L K  +   A  LL  M+  G++
Sbjct: 487 NGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 175/338 (51%), Gaps = 6/338 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID M +  L +   G + E+   G S  V  +N L++  C  GK+K+A  + +E   + 
Sbjct: 205 IIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKT 264

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++    ++N L++  CK   + E   + +VM  + ++PDV TYS L++G      +  A+
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M   G+TP+   +T LI+G CKN  +D      EA  +  EM    + P  +TY+
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVD------EALNLFKEMHQKNMVPGIVTYS 378

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG CK G +    D+  EM  RG   D + +++LI G C+ G +  A  +  +M   
Sbjct: 379 SLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQ 438

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            ++P+  T+T+++D  CK G  K    + +++ + G+   V TYN ++NG CK G L+ A
Sbjct: 439 EIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEA 498

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             +L  M D G +P+  T+  ++    K    +  +KL
Sbjct: 499 LTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKL 536



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 6/256 (2%)

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +N+D+     + M      P +  ++ +++   K      A  L H +  +G+ P+ +  
Sbjct: 38  QNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITL 97

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             LI+  C  G+I           ++ ++   G  PD +T   L+ G C +G ++ AL  
Sbjct: 98  NILINCFCHMGQITFGFS------VLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHF 151

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +++ +G +L+ V++  LI+G C+ G    A + LR++     KPD   Y  +ID  CK
Sbjct: 152 HDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCK 211

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                  + L  EM   G    V TYN L+ G C  G+LK A  LL+ M+   + P+  T
Sbjct: 212 YQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYT 271

Query: 418 YNILLEGHCKHGNPED 433
           YNIL++  CK G  ++
Sbjct: 272 YNILVDALCKEGKVKE 287



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 16/241 (6%)

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
             +DDA    + M     TP  + F  ++D   K      A  +    ++       G+ 
Sbjct: 38  QNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLEL------KGIQ 91

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD IT  IL++ FC  G +     +  +++KRG   D V    LI G C  G+V +A   
Sbjct: 92  PDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHF 151

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--PAVETYNALMNGL 390
             ++L  G + +  +Y  +I+  CK GDT+   + L+++  DG L  P V  YN +++ +
Sbjct: 152 HDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKI--DGRLTKPDVVMYNTIIDAM 209

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACY 450
           CK+  +  A  L   M   G+  D +TYN L+ G C  G      KL+   GL+++    
Sbjct: 210 CKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVG------KLKEAIGLLNEMVLK 263

Query: 451 T 451
           T
Sbjct: 264 T 264



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D    P+++ F +L+  LCK G++KDAQ VF +   +G
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            H    ++N +INGHCK   L+E   + S ME +G  P+ +T+  +I  L K++  D AE
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAE 534

Query: 220 LLLHEMCERGL 230
            LL +M  RGL
Sbjct: 535 KLLRQMIARGL 545


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 237/495 (47%), Gaps = 57/495 (11%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRG-THLPGLVLDAL 65
           H  ST  H LV  +M+  A+  L H++    G  +   +F +++ET    +    V D L
Sbjct: 59  HIISTTTHILVKARMYGYAKTTLSHMLHMDVGFNN---VFGALMETYPFCNSNPAVFDLL 115

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           + V +    + DA++ FRL+    F      C  ++  +++     +   F+ E++    
Sbjct: 116 IRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRV 175

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V  FN+L++ LC+ GK K A ++  +  + G   TAV++NTL+N +CK         
Sbjct: 176 SPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASE 235

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   G+  DV TY+ LI+ LC+++R     L+L  M +  + PN++ + TLI+G  
Sbjct: 236 LIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLV 295

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           K G+I +A                             G+++EA ++ D M ++GL P+++
Sbjct: 296 KEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEV 355

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  LL+G  K         + + M   G+ + ++++T +I G C+ G + EA ++L +M
Sbjct: 356 TYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDM 415

Query: 337 LKVGLKPDDATYTMVIDCF-------------------CKNGDTKTGFRLLKEMRSDGHL 377
           LKV + PD  T++++++ F                   CK G+ K        M   GH+
Sbjct: 416 LKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHV 475

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----ED 433
               T + L+   C+ G+L+ A   +D M  +G+ P  +T++ +++ +   G+       
Sbjct: 476 SDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSV 535

Query: 434 FDKLQSEKGLVSDYA 448
           FDK+ S   L S + 
Sbjct: 536 FDKMNSLGHLPSQFT 550



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 164/366 (44%), Gaps = 41/366 (11%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            L+D +++       L  + ++L+ G  P    FNVL+ +  ++GK+     +      R 
Sbjct: 660  LVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRS 719

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA- 218
            L     ++N L++G+ K   +    +L + M   G  PD  T+ +LI G CK   LD A 
Sbjct: 720  LCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAV 779

Query: 219  ------------------ELLLHEMCER----------------GLTPNDVIFTTLIDGH 244
                               +L+ ++CER                G+TPN   + +L +G 
Sbjct: 780  KFLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGF 839

Query: 245  CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
             +    D      EAR I+  +  NG  P    +T L+ G C+ G+++ A++++ EM   
Sbjct: 840  VRTCSFD------EARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKIL 893

Query: 305  GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            G+    VA +A+I G  R  K  EA R+L  ML++ + P  AT+T ++  +CK G+    
Sbjct: 894  GVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKA 953

Query: 365  FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
              L   M        V  YN L++GLC  G ++ A  L + M    + P+   Y +L++ 
Sbjct: 954  LELRSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDS 1013

Query: 425  HCKHGN 430
                GN
Sbjct: 1014 FLCTGN 1019



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 194/456 (42%), Gaps = 78/456 (17%)

Query: 57  LPGLVLDALMIV-YVDLGFLDDAIQCFRLLRK------HYFR--IPARGCRC-------- 99
           +P  VL + +I  Y  +G L +A+  + ++ +      H+    + A  CRC        
Sbjct: 440 VPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEY 499

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYS-------------------PSVYVFNVLMHKLC 140
            +D M R  L   ++ F   I  YG S                   PS + +  L+  L 
Sbjct: 500 FVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLL 559

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
             G I +A++             +  +NT++    ++ NL     L   M  +   PD +
Sbjct: 560 IGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSF 619

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGL-TPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
           TY++LI GLC++ ++  A LL     E+GL +PN  ++T+L+DG  K G        K A
Sbjct: 620 TYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGH------SKAA 673

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI---------------------- 297
             + ++M   G+ PD I + +LLD + ++G +    DI                      
Sbjct: 674 LYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHG 733

Query: 298 -------------RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
                          EMI  G   D + + +LI G+C+ G +  A + LR++   G K D
Sbjct: 734 YSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVD 793

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             T  +++   C+  + K  F L+K++   G  P V+TYN+L NG  +      A  +L 
Sbjct: 794 CFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILH 853

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            +L+ G  P    +  L+ G C+ GN +   +LQ E
Sbjct: 854 ALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDE 889



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 165/333 (49%), Gaps = 9/333 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+  ++  L+  L KEG  K A  +F++    G+   A++FN L++ + +   + +   
Sbjct: 651 SPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVND 710

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + S M    +  ++ TY+ L++G  K + +     L +EM   G  P+ + + +LI G+C
Sbjct: 711 ILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYC 770

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G +D+A  +K  RKI  E    G   D  T  +L+   C+  +++ A D+ K++   G
Sbjct: 771 KSGSLDVA--VKFLRKITVE----GFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLG 824

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  +   + +L +GF R     EA  +L  +L+ G  P    +T +I   C+ G+ K   
Sbjct: 825 VTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAM 884

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L  EM+  G        +A++ GL +  +   A  +L  ML++ ++P   T+  L+  +
Sbjct: 885 ELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTY 944

Query: 426 CKHGNPEDFDKLQS--EKGLVS-DYACYTSLVS 455
           CK GN     +L+S  E+  V  D A Y  L+S
Sbjct: 945 CKEGNVAKALELRSVMEQCHVKLDVAAYNVLIS 977



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 133/288 (46%), Gaps = 30/288 (10%)

Query: 116  FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
             Y E++ +G++P    ++ L+   CK G +  A     +    G      + N L++  C
Sbjct: 746  LYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLC 805

Query: 176  KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            +   +   F L   +   G+ P+V TY++L NG  +    D+A  +LH + E G  P   
Sbjct: 806  ERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCK 865

Query: 236  IFTTLIDGHCKNGRIDMAGDMK-----------------------------EARKIVDEM 266
             FTTLI G C+ G +  A +++                             EA +I+  M
Sbjct: 866  QFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIM 925

Query: 267  CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
                + P   T+T L+  +CKEG++  AL++R  M +  ++LD  A+  LISG C  G +
Sbjct: 926  LEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDI 985

Query: 327  VEAERMLREMLKVGLKPDDATYTMVIDCF-CKNGDTKTGFRLLKEMRS 373
              A ++  EM +  + P+ + Y ++ID F C         +LL+++R+
Sbjct: 986  QAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTGNYIVESEKLLRDLRT 1033



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 8/309 (2%)

Query: 29   LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
            LLH    + GM   + L+  ++   G     L   +L++ Y   G LD A++  R +   
Sbjct: 730  LLHGYSKRHGMARCSKLYNEMI-IHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVE 788

Query: 89   YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
             F++       L+ ++   N   +      ++   G +P+V  +N L +   +     +A
Sbjct: 789  GFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEA 848

Query: 149  QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
            + +     + G   T   F TLI G C+  N+     L+  M+  G+       SA+I G
Sbjct: 849  RCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRG 908

Query: 209  LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            L +  + D+A  +L  M E  + P    FTTL+  +CK G +  A +++     V E C 
Sbjct: 909  LARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRS----VMEQCH 964

Query: 269  NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF-CRGGKVV 327
              L  D   Y +L+ G C +GD+++A  + +EM +R I  +   +  LI  F C G  +V
Sbjct: 965  VKL--DVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTGNYIV 1022

Query: 328  EAERMLREM 336
            E+E++LR++
Sbjct: 1023 ESEKLLRDL 1031



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 158/363 (43%), Gaps = 33/363 (9%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y+     +N ++    + G + +A  + DE         + ++ +LI G C+   +    
Sbjct: 579 YAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPAL 638

Query: 185 RLKS-VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            L    +E   + P+   Y++L++GL KE     A  +  +M   G+ P+ + F  L+D 
Sbjct: 639 LLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDR 698

Query: 244 HCKNGRIDMAGD-----------------------------MKEARKIVDEMCTNGLNPD 274
           + + G++    D                             M    K+ +EM  +G  PD
Sbjct: 699 YSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPD 758

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           ++T+  L+ G+CK G L+ A+   +++   G ++D      L+S  C   ++  A  +++
Sbjct: 759 RLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVK 818

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           ++  +G+ P+  TY  + + F +         +L  +  +G+ P  + +  L+ G+C+ G
Sbjct: 819 QLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMG 878

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYT 451
            +K A  L D M  LGV    +  + ++ G  +    ++  ++     E  ++   A +T
Sbjct: 879 NVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFT 938

Query: 452 SLV 454
           +L+
Sbjct: 939 TLM 941


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 196/387 (50%), Gaps = 7/387 (1%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDA 64
           TL  +S ++H L  ++    A  +L  ++ K  +     LF +IL + R       V D+
Sbjct: 92  TLETHSMILHILTKNRKFKSAELILKSVLVKGFIDLPDKLFEAILYSYRMCDSSPRVFDS 151

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L      +    +A   F  ++ + F      C   +  ++  +   + L FY E+    
Sbjct: 152 LFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCR 211

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+VY  N++M   CK GK++ A  VF+E    G+     S+NTLI G+C+   L+   
Sbjct: 212 ISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAV 271

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +LK+ M   G+  +V T+++LI+G CKE +L +A  +  EM    + PN + + TLI+GH
Sbjct: 272 KLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGH 331

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            + G  +M       R++ +EM  NG+  D +TY  L+ G CKEG  + A  + KE+ K 
Sbjct: 332 SQMGNSEM------GRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKE 385

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  +   F+ALISG C       A ++ + M+++G  P++ T+ M++  FCKN D +  
Sbjct: 386 NLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGA 445

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLC 391
           F +L EM      P  +  + + +GLC
Sbjct: 446 FLVLMEMFERCFTPGSDVLSEIYHGLC 472



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 153/321 (47%), Gaps = 12/321 (3%)

Query: 118 LEILDYGY---SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
            E + Y Y     S  VF+ L   L    K ++A   F +    G   T  S N  ++  
Sbjct: 132 FEAILYSYRMCDSSPRVFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSL 191

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
                +D        M    + P+VYT + ++   CK  +L+ A  +  EM   G++PND
Sbjct: 192 LDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPND 251

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             + TLI G+C+ G ++ A  +K      + M   G+  + +T+  L+DGFCKEG L  A
Sbjct: 252 TSYNTLIMGYCRKGLLNSAVKLK------NSMRAKGVEANVVTFNSLIDGFCKEGKLHEA 305

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             +  EM    +  + + +  LI+G  + G      R+  EM + G+K D  TY  +I  
Sbjct: 306 SKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILG 365

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK G TK    ++KE+  +  +P   T++AL++G C       A  L  +M+ +G  P+
Sbjct: 366 LCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPN 425

Query: 415 DITYNILLEGHCKHGNPEDFD 435
           + T+N+L+   CK+   EDF+
Sbjct: 426 EQTFNMLVSAFCKN---EDFE 443


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 215/439 (48%), Gaps = 27/439 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH---------- 56
           + +Y+ ++  L       +A +LLH++   +G GS   + +      G            
Sbjct: 158 VFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 57  ----------LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105
                     LP +V  ++++        +D A++    + K+           ++    
Sbjct: 218 TYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
            +  P   +GF  ++   G  P V  +++LM  LCK G+  +A+ +FD   KRGL     
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++ TL+ G+     L E   L  +M  +G+ PD Y +S LI     + ++D A L+  +M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKM 397

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
            ++GL PN V +  +I   CK+GR++      +A    ++M   GL+P  I Y  L+ G 
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVE------DAMLYFEQMIDEGLSPGNIVYNSLIHGL 451

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C     E A ++  EM+ RGI L+ + F ++I   C+ G+V+E+E++   M+++G+KP+ 
Sbjct: 452 CTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV 511

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +I+ +C  G      +LL  M S G  P   TY+ L+NG CK  ++++A +L   
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKE 571

Query: 406 MLDLGVVPDDITYNILLEG 424
           M   GV PD ITYNI+L+G
Sbjct: 572 MESSGVSPDIITYNIILQG 590



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 34/379 (8%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+LD G  P V  +N ++  LCK   +  A  V +   K G+    +++N++++G+C 
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 278

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           +    E       M   G+ PDV TYS L++ LCK  R  +A  +   M +RGL P    
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338

Query: 237 FTTLIDGHCKNGR-IDM----------------------------AGDMKEARKIVDEMC 267
           + TL+ G+   G  ++M                             G + +A  +  +M 
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMR 398

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GLNP+ +TY  ++   CK G +E A+   ++MI  G+   N+ + +LI G C   K  
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            AE ++ EML  G+  +   +  +ID  CK G      +L + M   G  P V TYN L+
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGL 443
           NG C  G++  A  LL  M+ +G+ P+ +TY+ L+ G+CK    ED    F +++S  G+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES-SGV 577

Query: 444 VSDYACYTSLVSKSSKYRQ 462
             D   Y  ++    + R+
Sbjct: 578 SPDIITYNIILQGLFQTRR 596



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 175/330 (53%), Gaps = 9/330 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  YVF++L+     +GK+  A +VF +  ++GL+  AV++  +I   CK+  +++ 
Sbjct: 366 GIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M   G+ P    Y++LI+GLC  N+ + AE L+ EM +RG+  N + F ++ID 
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ + M   G+ P+ ITY  L++G+C  G ++ A+ +   M+ 
Sbjct: 486 HCKEGRV------IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + V ++ LI+G+C+  ++ +A  + +EM   G+ PD  TY +++    +   T  
Sbjct: 540 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAA 599

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+    +A  +   +  + +  +  T+NI+++
Sbjct: 600 AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMID 659

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACY 450
              K G  ++   L    S  GLV +Y  Y
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 207/439 (47%), Gaps = 26/439 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           YS ++ +L  +    +AR +   + +K+G+    + + ++L+                  
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V   L+  Y + G +D A+  F  +R+      A     +I  + ++   
Sbjct: 363 VRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D G SP   V+N L+H LC   K + A+ +  E   RG+    + FN++
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++P+V TY+ LING C   ++D+A  LL  M   GL
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            PN V ++TLI+G+CK  R      M++A  +  EM ++G++PD ITY I+L G  +   
Sbjct: 543 KPNTVTYSTLINGYCKISR------MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + + G +++   +  ++ G C+     +A +M + +  + LK +  T+ +
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +ID   K G       L     S+G +P   TY  +   +   G L+  + L  +M D G
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716

Query: 411 VVPDDITYNILLEGHCKHG 429
              D    N ++    + G
Sbjct: 717 CTVDSGMLNFIVRELLQRG 735



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 159/318 (50%), Gaps = 14/318 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA---VSFNTLINGHC 175
           E+L  G   S+Y  N  +  + ++     A   ++   + G         ++  LI   C
Sbjct: 40  ELLRRGRGASIYGLNRALADVARDSPAA-AVSRYNRMARAGADEVTPDLCTYGILIGCCC 98

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
           +A  LD GF     +   G R D   ++ L+ GLC + R  DA +++L  M E G  PN 
Sbjct: 99  RAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNV 158

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GLNPDKITYTILLDGFCKEGDL 291
             +  L+ G C   R       +EA +++  M  +   G  PD ++YT +++GF KEGD 
Sbjct: 159 FSYNILLKGLCDENR------SQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A     EM+ RGI  D V + ++I+  C+   + +A  +L  M+K G+ PD  TY  +
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +  +C +G  K     LK+MRSDG  P V TY+ LM+ LCK+G+   A  + D+M   G+
Sbjct: 273 LHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL 332

Query: 412 VPDDITYNILLEGHCKHG 429
            P+  TY  LL+G+   G
Sbjct: 333 KPEITTYGTLLQGYATKG 350



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 169/337 (50%), Gaps = 15/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P +  + +L+   C+ G++           K+G    A++F  L+ G C  K   +   
Sbjct: 84  TPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD 143

Query: 186 LK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER--GLTPNDVI-FTTLI 241
           +    M   G  P+V++Y+ L+ GLC ENR  +A  LLH M +   G +P DV+ +TT+I
Sbjct: 144 IVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVI 203

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G  K G      D  +A     EM   G+ PD +TY  ++   CK   ++ A+++   M
Sbjct: 204 NGFFKEG------DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +K G+  D + + +++ G+C  G+  EA   L++M   G++PD  TY++++D  CKNG  
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               ++   M   G  P + TY  L+ G    G L   + LLD M+  G+ PD   ++IL
Sbjct: 318 MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377

Query: 422 LEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           +  +   G  +     F K++ ++GL  +   Y +++
Sbjct: 378 ICAYANQGKVDQAMLVFSKMR-QQGLNPNAVTYGAVI 413



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 30/276 (10%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N L++  C  GK+ +A  +       GL    V+++TLING+CK   +++ 
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME SG+ PD+ TY+ ++ GL +  R   A+ L   + E G       +  ++ G
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            CKN   D A                             G   EA+ +     +NGL P+
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY ++ +    +G LE    +   M   G  +D+     ++    + G++  A   L 
Sbjct: 686 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            + +     + +T ++ ID     G  +  +R L E
Sbjct: 746 MIDEKHFSLEASTASLFID-LLSGGKYQEYYRFLPE 780



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 75/186 (40%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  +  ++DA+  F+ +              ++  + +T         Y+ I + G    
Sbjct: 556 YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIE 615

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N+++H LCK     DA  +F       L   A +FN +I+   K    DE   L  
Sbjct: 616 LSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 675

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
               +G+ P+ +TY  +   +  +  L++ + L   M + G T +  +   ++    + G
Sbjct: 676 AFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 735

Query: 249 RIDMAG 254
            I  AG
Sbjct: 736 EITRAG 741


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 191/336 (56%), Gaps = 12/336 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+++++N L+  LCK G I+ A+ +FD   ++GL   +V+++T+I+G+CK++N+ E 
Sbjct: 589 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 648

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L   M   G++P  + Y+AL++G CKE  ++ A  L  EM ++G     + F TLIDG
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDG 707

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK+ +I      +EA ++  EM    + PD +TYT ++D  CK G +E A  + KEM +
Sbjct: 708 YCKSCKI------QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 761

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R + +D V +T+L+ G+ + G+  E   +  +M+  G+KPD+ TY +VI   CK  +   
Sbjct: 762 RNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVE 821

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            F+L  E+   G L     ++ L+  LCK   L  A+ LLD M +LG+ P     + L+ 
Sbjct: 822 AFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVR 881

Query: 424 GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
              + G  ++    F+ ++S  GLV D      LV+
Sbjct: 882 SFHEAGKMDEATRVFEGVKS-LGLVPDTTTLIDLVN 916



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 192/406 (47%), Gaps = 68/406 (16%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V V++ L+     EG+I++A+ + D     G+      +N +I+   KA  ++E 
Sbjct: 379 GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEA 438

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 ++G G++PD  T+ A I G  K  ++ +A     EM + GL PN+ ++T LI+G
Sbjct: 439 STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLING 498

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           H K G +  A                             G ++EA K+  E+   GL PD
Sbjct: 499 HFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 558

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+ L+ GFCK+G++E A ++  EM  +GI  +   + AL+ G C+ G +  A ++  
Sbjct: 559 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 618

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M + GL+PD  TY+ +ID +CK+ +    F L  EM S G  P    YNAL++G CK G
Sbjct: 619 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 678

Query: 395 QLKNANMLLDTMLDLG----------------------------------VVPDDITYNI 420
            ++ A  L   ML  G                                  ++PD +TY  
Sbjct: 679 DMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 738

Query: 421 LLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           +++ HCK G  E+    F ++Q E+ L+ D   YTSL+   +K  Q
Sbjct: 739 VIDWHCKAGKMEEANLLFKEMQ-ERNLIVDTVTYTSLMYGYNKLGQ 783



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 184/348 (52%), Gaps = 13/348 (3%)

Query: 114 LGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  LE+LD        PS   +  +++ LC    +  A  + ++    GL    V ++T
Sbjct: 330 MGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYST 389

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI G+     ++E  RL   M  SG+ PD++ Y+A+I+ L K  ++++A   L E+  RG
Sbjct: 390 LIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 449

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P+ V F   I G+ K G+      M EA K  DEM  +GL P+   YT+L++G  K G
Sbjct: 450 LKPDAVTFGAFILGYSKTGK------MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 503

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           +L  AL I + +   G+  D    +A I G  + G+V EA ++  E+ + GL PD  TY+
Sbjct: 504 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 563

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I  FCK G+ +  F L  EM   G  P +  YNAL++GLCK G ++ A  L D M + 
Sbjct: 564 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK 623

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G+ PD +TY+ +++G+CK  N  +   L  E   KG+      Y +LV
Sbjct: 624 GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 193/393 (49%), Gaps = 27/393 (6%)

Query: 41  SSASLFASIL---ETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           SS+S+  S+L      G   P +V D L+  Y  +G LD+A   F + +     I    C
Sbjct: 136 SSSSILDSVLFWFRNYGGSSP-VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRC 194

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             L  R M                + G  P+ Y + ++   LC+  ++ +A++ F+E  K
Sbjct: 195 NSL--RSMG---------------EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK 237

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
            GL     + + LI+G  +  ++DE  R+K VM   G+  ++ TY+ LI+GLCK  +++ 
Sbjct: 238 TGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEK 297

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +L  M   G  PN   F  LI+G+C+        +M  A +++DEM    L P  ++
Sbjct: 298 AAEILKGMITLGCKPNSRTFCLLIEGYCREH------NMGRALELLDEMEKRNLVPSAVS 351

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  +++G C   DL  A  + ++M   G++ + V ++ LI G+   G++ EA R+L  M 
Sbjct: 352 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS 411

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G+ PD   Y  +I C  K G  +     L E++  G  P   T+ A + G  K G++ 
Sbjct: 412 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 471

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            A    D MLD G++P++  Y +L+ GH K GN
Sbjct: 472 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN 504



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 161/311 (51%), Gaps = 14/311 (4%)

Query: 86  RKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           RK +  +P +G          +ID   ++         + E+   G  P  +V+N L+H 
Sbjct: 614 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 673

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
            CKEG ++ A  +F E  ++G  AT +SFNTLI+G+CK+  + E  +L   M    + PD
Sbjct: 674 CCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD 732

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             TY+ +I+  CK  ++++A LL  EM ER L  + V +T+L+ G+ K       G   E
Sbjct: 733 HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNK------LGQSSE 786

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
              + ++M   G+ PD++TY +++   CKE +L  A  +R E++ +G+         LI+
Sbjct: 787 VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLIT 846

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
             C+   + EA ++L EM ++GLKP  A  + ++  F + G      R+ + ++S G +P
Sbjct: 847 ALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVP 906

Query: 379 AVETYNALMNG 389
              T   L+NG
Sbjct: 907 DTTTLIDLVNG 917



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 186/379 (49%), Gaps = 30/379 (7%)

Query: 100 LIDRMMRTNLPTVTL--GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF----- 152
           ++ +M+RT   + ++         +YG S  V VF++L+    + G + +A  VF     
Sbjct: 126 VLTQMIRTPYSSSSILDSVLFWFRNYGGSSPV-VFDILIDSYKRMGMLDEAANVFFVAKN 184

Query: 153 -------------DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
                           G++GL     ++  +  G C+AK ++E       M+ +G++PD 
Sbjct: 185 DSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDY 244

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
              SALI+G  +E  +D+   +   M   G+  N + +  LI G CK G+      M++A
Sbjct: 245 NACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGK------MEKA 298

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            +I+  M T G  P+  T+ +L++G+C+E ++  AL++  EM KR +    V++ A+I+G
Sbjct: 299 AEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMING 358

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C    +  A ++L +M   GLKP+   Y+ +I  +   G  +   RLL  M   G  P 
Sbjct: 359 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPD 418

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           +  YNA+++ L K G+++ A+  L  +   G+ PD +T+   + G+ K G   +  K   
Sbjct: 419 IFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFD 478

Query: 440 E---KGLVSDYACYTSLVS 455
           E    GL+ +   YT L++
Sbjct: 479 EMLDHGLMPNNPLYTVLIN 497



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 9/241 (3%)

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L  M E+GL PN   +T +  G C+  R      M EA+   +EM   GL PD    + L
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKR------MNEAKLTFEEMQKTGLKPDYNACSAL 250

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DGF +EGD++  L I+  M+  GI ++ + +  LI G C+ GK+ +A  +L+ M+ +G 
Sbjct: 251 IDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGC 310

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           KP+  T+ ++I+ +C+  +      LL EM     +P+  +Y A++NGLC    L  AN 
Sbjct: 311 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 370

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSS 458
           LL+ M   G+ P+ + Y+ L+ G+   G  E+  +L    S  G+  D  CY +++S  S
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 430

Query: 459 K 459
           K
Sbjct: 431 K 431


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 186/378 (49%), Gaps = 34/378 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G   S    NVL+H  CKEG+I++     DE    G      +FN+L+NG C+  
Sbjct: 271 QMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIG 330

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++     +  VM   G  PD++TY++LI GLCK   +++A  +L++M  R  +PN V + 
Sbjct: 331 HVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYN 390

Query: 239 TLIDGHCKNGRIDMAGDMKE-----------------------------ARKIVDEMCTN 269
           TLI   CK  +++ A ++                               A ++ +EM T 
Sbjct: 391 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTK 450

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G +PD+ TY +L+D  C  G LE AL + KEM   G   + V +  LI GFC+  ++ EA
Sbjct: 451 GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEA 510

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           E +  EM   G+  +  TY  +ID  CKN   +   +L+ +M  +G  P   TYN+L+  
Sbjct: 511 EEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTY 570

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
            C+ G +K A  ++ TM   G  PD +TY  L+ G  K G  E   +L      KG+V  
Sbjct: 571 FCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLA 630

Query: 447 YACYTSLVSKSSKYRQKR 464
              Y  ++   + +R+KR
Sbjct: 631 PQTYNPVI--KALFREKR 646



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 175/334 (52%), Gaps = 10/334 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           +SP+   +N L+  LCKE ++++A  +      +G+     +FN+LI G C   N     
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M+  G  PD +TY+ LI+ LC   RL++A  LL EM   G + N V + TLIDG 
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CKN RI+      EA +I DEM   G++ + +TY  L+DG CK   +E A  +  +M+  
Sbjct: 502 CKNKRIE------EAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLME 555

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G++ D   + +L++ FCR G + +A  +++ M   G +PD  TY  +I    K G  +  
Sbjct: 556 GLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELA 615

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            RLL+ ++  G + A +TYN ++  L +  +   A  L   M++ G  PD +TY ++  G
Sbjct: 616 SRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRG 675

Query: 425 HCKHGNP----EDFDKLQSEKGLVSDYACYTSLV 454
            C  G P     DF    ++KG + D++ +  L 
Sbjct: 676 LCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLA 709



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 157/304 (51%), Gaps = 7/304 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  FN L+  LC     + A  +F+E   +G H    ++N LI+  C    L+E 
Sbjct: 416 GILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEA 475

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME SG   +V TY+ LI+G CK  R+++AE +  EM  +G++ N V + TLIDG
Sbjct: 476 LSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDG 535

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN R++      EA +++D+M   GL PDK TY  LL  FC+ GD++ A DI + M  
Sbjct: 536 LCKNRRVE------EAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTS 589

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G E D+V +  LI G  + G+V  A R+LR +   G+     TY  VI    +   T  
Sbjct: 590 NGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSE 649

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-QLKNANMLLDTMLDLGVVPDDITYNILL 422
             RL +EM   G  P   TY  +  GLC  G  +  A   L  M D G +PD  ++ +L 
Sbjct: 650 AVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLA 709

Query: 423 EGHC 426
           EG C
Sbjct: 710 EGLC 713



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 180/347 (51%), Gaps = 15/347 (4%)

Query: 118 LEILDYG-----YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           L++LD+      + PS  ++  ++ KL K+G     + V  E    G      +F  LI 
Sbjct: 89  LDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIE 148

Query: 173 GHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            + K +  DE   +  +ME   G++ D +TY+ L+N L   N+L   E++   M  RG+ 
Sbjct: 149 SYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIK 208

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   F  LI   C+      A  ++ A  +++EM + GL+PD+ T+T L+ GF +EG++
Sbjct: 209 PDVTTFNILIKALCR------AHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNM 262

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             AL IR++M+  G    NV    L+ G+C+ G++ E    + EM   G +PD  T+  +
Sbjct: 263 NGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSL 322

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  C+ G  K    +L  M  +G  P + TYN+L+ GLCK G+++ A  +L+ M+    
Sbjct: 323 VNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDF 382

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
            P+ +TYN L+   CK    E+  +L    + KG++ D   + SL+ 
Sbjct: 383 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 429



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 9/336 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           ++G     + +N L++ L    K+K  ++V      RG+     +FN LI   C+A  + 
Sbjct: 169 EFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIR 228

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               +   M   G+ PD  T++ L+ G  +E  ++ A  +  +M   G   ++V    L+
Sbjct: 229 PAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLV 288

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G+CK GRI+      E    +DEM   G  PD+ T+  L++G C+ G ++ AL+I   M
Sbjct: 289 HGYCKEGRIE------EVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G + D   + +LI G C+ G+V EA  +L +M+     P+  TY  +I   CK    
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQV 402

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L + + S G LP V T+N+L+ GLC     + A  L + M   G  PD+ TYN+L
Sbjct: 403 EEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNML 462

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           ++  C  G  E+   L  E    G   +   Y +L+
Sbjct: 463 IDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLI 498



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 7/293 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  +  TN   + +  + E+   G  P  + +N+L+  LC  G++++A  +  E    G
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++NTLI+G CK K ++E   +   ME  G+  +V TY+ LI+GLCK  R+++A 
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAA 546

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ +M   GL P+   + +L+   C+      AGD+K+A  IV  M +NG  PD +TY 
Sbjct: 547 QLMDQMLMEGLKPDKFTYNSLLTYFCR------AGDIKKAADIVQTMTSNGCEPDSVTYG 600

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G  K G +E A  + + +  +G+ L    +  +I    R  +  EA R+ REM++ 
Sbjct: 601 TLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEK 660

Query: 340 GLKPDDATYTMVIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           G  PD  TY +V    C   G        L EM   G LP   ++  L  GLC
Sbjct: 661 GDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLC 713


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 198/388 (51%), Gaps = 18/388 (4%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           L+DAI  F  +LR          C+ L+  ++R   P + +  Y ++        +Y FN
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCK-LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFN 118

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+   C   K+  A   F +  K GLH   V+F TL++G C    + E       M  +
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFET 178

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG----R 249
             RP+V T++ L+NGLC+E R+ +A  LL  M E GL P  + + T++DG CK G     
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +++   M+E   I+         P+ + Y+ ++D  CK+G    A ++  EM ++GI  D
Sbjct: 239 LNLLRKMEEVSHII---------PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              + ++I GFC  G+  +AE++L+EML+  + PD  TY  +I+ F K G       L  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G +P   TY+++++G CK  +L  A  +   M   G  P+ IT+N L++G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLV 454
             +D  +L    +E GLV+D   Y +L+
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    +     + E+ + G  P ++ +N ++   C  G+  DA+ +  E  +R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++N LIN   K     E   L   M   G+ P+  TYS++I+G CK+NRLD AE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M  +G +PN + F TLIDG+C   RID      +  +++ EM   GL  D  TY 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRID------DGMELLHEMTETGLVADTTTYN 434

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GF   GDL +ALD+ +EMI  G+  D V    L+ G C  GK+ +A  M + M K 
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 340 -----------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                      G++PD  TY ++I      G       L +EM   G +P   TY+++++
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLCK  +L  A  + D+M      P+ +T+  L+ G+CK G  +D  +L  E   +G+V+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 446 DYACYTSLV 454
           +   Y +L+
Sbjct: 615 NAITYITLI 623



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 190/372 (51%), Gaps = 27/372 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ DR+      +  L F+ ++ +    P+V  F  LM+ LC+EG+I +A  + D   + 
Sbjct: 160 CVEDRV------SEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG-SGMRPDVYTYSALINGLCKENRLDD 217
           GL  T +++ T+++G CK  +      L   ME  S + P+V  YSA+I+ LCK+ R  D
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ L  EM E+G+ P+   + ++I G C +GR        +A +++ EM    ++PD +T
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR------WSDAEQLLQEMLERKISPDVVT 327

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++ F KEG    A ++  EM+ RGI  + + ++++I GFC+  ++  AE M   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G  P+  T+  +ID +C       G  LL EM   G +    TYN L++G    G L 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK----------GL 443
            A  LL  M+  G+ PD +T + LL+G C +G  +D    F  +Q  K          G+
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 444 VSDYACYTSLVS 455
             D   Y  L+S
Sbjct: 508 EPDVQTYNILIS 519



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 189/390 (48%), Gaps = 10/390 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KG+  +  LF+ +L +R   LP +V    LM V V +   D  I  ++ + +   R    
Sbjct: 58  KGLEDAIDLFSDMLRSR--PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIY 115

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI      +     L  + +I   G  P V  F  L+H LC E ++ +A   F + 
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            +       V+F TL+NG C+   + E   L   M   G++P   TY  +++G+CK+   
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 216 DDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
             A  LL +M E   + PN VI++ +ID  CK+GR        +A+ +  EM   G+ PD
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGR------HSDAQNLFTEMQEKGIFPD 289

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY  ++ GFC  G    A  + +EM++R I  D V + ALI+ F + GK  EAE +  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EML  G+ P+  TY+ +ID FCK         +   M + G  P + T+N L++G C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           ++ +   LL  M + G+V D  TYN L+ G
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHG 439



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 5/394 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  S A    + ++ +G        +++++ +   G   DA Q  + + +        
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+  ++          Y E+L  G  P+   ++ ++   CK+ ++  A+ +F   
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +G     ++FNTLI+G+C AK +D+G  L   M  +G+  D  TY+ LI+G      L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI----DMAGDMKEARKIVDEMCT-NG 270
           + A  LL EM   GL P+ V   TL+DG C NG++    +M   M++++K +D     NG
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD  TY IL+ G   EG    A ++ +EM  RGI  D + ++++I G C+  ++ EA 
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           +M   M      P+  T+T +I+ +CK G    G  L  EM   G +    TY  L+ G 
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            K G +  A  +   M+  GV PD IT   +L G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 17/265 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G       +N L+H     G +  A  +  E    GL    V+ +TL++G C   
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479

Query: 179 NLDEGFRLKSVMEGS-----------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            L +   +  VM+ S           G+ PDV TY+ LI+GL  E +  +AE L  EM  
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+ P+ + ++++IDG CK  R+D      EA ++ D M +   +P+ +T+T L++G+CK
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLD------EATQMFDSMGSKSFSPNVVTFTTLINGYCK 593

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++  L++  EM +RGI  + + +  LI GF + G +  A  + +EM+  G+ PD  T
Sbjct: 594 AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMR 372
              ++       + K    +L++++
Sbjct: 654 IRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 11/207 (5%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRI----PARGCR-------CLIDRMMRTNLPT 111
           D L+    D G L DA++ F++++K    +    P  G          LI  ++      
Sbjct: 469 DTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL 528

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                Y E+   G  P    ++ ++  LCK+ ++ +A  +FD  G +      V+F TLI
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG+CKA  +D+G  L   M   G+  +  TY  LI G  K   ++ A  +  EM   G+ 
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           P+ +    ++ G      +  A  M E
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 175/333 (52%), Gaps = 9/333 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  G  PS+  F  L++ LC EGK+    M++D+   RGL     ++N +IN   K+ 
Sbjct: 122 KILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSG 181

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E       ME  G  P+V  YS LI+G C   ++D+A  +   M  +G TPN   +T
Sbjct: 182 KANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYT 241

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +L++G+CK  RI+      EA +++DE    GL PD +T+T ++ G C+ G   +A  + 
Sbjct: 242 SLMNGYCKIERIE------EAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLF 295

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + +   G   + + +  L+ G C+ G + EA  + +EM +  +KP+   YT++ID  CK 
Sbjct: 296 RYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKC 355

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  K G  L   +  +G  P V TY AL+  LCK G +  A+ L   M + G  PD   Y
Sbjct: 356 GKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAY 415

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
           N++++G  +H +P    +L  E   +G  +D A
Sbjct: 416 NVIIQGFLQHKDPSMARQLVEEMVNRGFSADAA 448



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 200/389 (51%), Gaps = 21/389 (5%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLID------RMMRTNLPTVTLGFYLEILDYGYSPSV 129
           DDA+  FRL+     R P     C+++       ++R       +    EI   G    +
Sbjct: 44  DDALASFRLM---LLRKPLP---CIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDI 97

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +  ++L++  C   ++     V  +  K GL  + V+F TL+NG C    +D+   L   
Sbjct: 98  HSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDD 157

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G++P+VYTY+ +IN L K  + ++A   L +M + G  PN V ++TLIDG+C  G+
Sbjct: 158 MLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQ 217

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D      EAR + D M + G  P+  TYT L++G+CK   +E A+ +  E +++G+  D
Sbjct: 218 MD------EARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPD 271

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V FT +ISG CR G+ + A+++ R +   G  P+  TY +++D  CK+G+ +  F L +
Sbjct: 272 IVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQ 331

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM+     P +  Y  L++ LCK G++K+   L   ++D G+ P+  TY  L+   CK G
Sbjct: 332 EMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEG 391

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLVS 455
              +  KL     E G   D   Y  ++ 
Sbjct: 392 LIIEAHKLFRKMEEDGCTPDKCAYNVIIQ 420



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 170/306 (55%), Gaps = 6/306 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y ++L  G  P+VY +NV+++ L K GK  +A     +  K G     V+++TLI+G+C
Sbjct: 154 LYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYC 213

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +DE   +  +M   G  P+VYTY++L+NG CK  R+++A  LL E   +GL P+ V
Sbjct: 214 LRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIV 273

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            FTT+I G C+ GR  +A     A+++   +C +G  P+ +TY +LLDG CK G+LE A 
Sbjct: 274 TFTTIISGLCRAGR-PLA-----AQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAF 327

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + +EM +  ++ + V +T LI   C+ GK+ + + +   ++  GLKP+  TYT ++   
Sbjct: 328 ALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGAL 387

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G      +L ++M  DG  P    YN ++ G  +H     A  L++ M++ G   D 
Sbjct: 388 CKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADA 447

Query: 416 ITYNIL 421
            T  +L
Sbjct: 448 ATRALL 453



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+VY +  LM+  CK  +I++A  + DE  ++GL    V+F T+I+G C+A      
Sbjct: 232 GCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAA 291

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   +   G  P++ TY  L++GLCK   L++A  L  EM    + PN VI+T LID 
Sbjct: 292 QQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDS 351

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G+I      K+ +++   +   GL P+  TYT L+   CKEG +  A  + ++M +
Sbjct: 352 LCKCGKI------KDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEE 405

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
            G   D  A+  +I GF +      A +++ EM+  G   D AT  ++ D
Sbjct: 406 DGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALLND 455



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 129/276 (46%), Gaps = 27/276 (9%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YST++          +AR +  L+VSK   G + +++                 +LM  Y
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVSK---GCTPNVYT--------------YTSLMNGY 247

Query: 70  VDLGFLDDAIQCF-RLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
             +  +++A+Q     LRK    +P       +I  + R   P      +  I  +G++P
Sbjct: 248 CKIERIEEAVQLLDETLRKGL--VPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTP 305

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           ++  + VL+  LCK G +++A  +F E  +  +    V +  LI+  CK   + +G  L 
Sbjct: 306 NIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELF 365

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S +   G++P+VYTY+AL+  LCKE  + +A  L  +M E G TP+   +  +I G  ++
Sbjct: 366 SRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQH 425

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
                  D   AR++V+EM   G + D  T  +L D
Sbjct: 426 ------KDPSMARQLVEEMVNRGFSADAATRALLND 455


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 196/344 (56%), Gaps = 24/344 (6%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA--VSFNTLIN-GHCKAKNLDE 182
           +P ++ +N ++  LCK G ++ A+ + +E  +RG  +    V++NTLIN G CK  +++E
Sbjct: 129 NPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEE 188

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              +   M+ +G  PDV TY+++I+ LC   R+ +A  +L  M     +P+ V F TL+D
Sbjct: 189 ALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLD 245

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK      AG +  A ++++EMC   + PD ITYTIL++G C+ G ++ A  + +E++
Sbjct: 246 GFCK------AGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREM---------LKVGLKPDDATYTMVID 353
           ++G   D +A+T+L+ G C+ G++ EA ++++EM         + + + P   TY +V+ 
Sbjct: 300 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLG 359

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
              K+G       L+ ++ + G++P V TYN L++GLCK  +++ A  L D M  LG  P
Sbjct: 360 GLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFP 419

Query: 414 DDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +D+T   ++ G C+ G  +D   L    S K    +   YTSL+
Sbjct: 420 NDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLI 463



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 195/380 (51%), Gaps = 24/380 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D ++++     T   Y ++L  G SP++  F +L+   CK G+   A        +  
Sbjct: 33  LLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFS 92

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +      FN LI+G  K  N D+  +L   ME S + PD++TY+ +I+GLCK   L+ A 
Sbjct: 93  VAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKAR 152

Query: 220 LLLHEMCERG--LTPNDVIFTTLID-GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            LL EM  RG    P+ V + TLI+ G CK+      GD++EA +I+D M   G  PD I
Sbjct: 153 ELLEEMIRRGGKSAPDIVTYNTLINAGICKD------GDVEEALEILDGMKLAGPAPDVI 206

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  ++   C  G +  A +I K M       D V F  L+ GFC+ G +  A  +L EM
Sbjct: 207 TYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 263

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            +  + PD  TYT++++  C+ G  +  F LL+E+   G++P V  Y +L++GLCK G++
Sbjct: 264 CRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEI 323

Query: 397 KNANML---------LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
           + A+ L         L  M+ + +VP   TYNI+L G  K G+      L S+   +G V
Sbjct: 324 EEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV 383

Query: 445 SDYACYTSLVSKSSKYRQKR 464
            D   Y +L+    K  + R
Sbjct: 384 PDVVTYNTLIDGLCKANRVR 403



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 167/312 (53%), Gaps = 10/312 (3%)

Query: 118 LEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LEILD     G +P V  +N ++H LC  G++ +A  +             V+FNTL++G
Sbjct: 190 LEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPDLVTFNTLLDG 246

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CKA  L     +   M    + PDV TY+ L+NGLC+  ++  A  LL E+  +G  P+
Sbjct: 247 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 306

Query: 234 DVIFTTLIDGHCKNGRIDMAGDM-KE--ARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            + +T+L+DG CK+G I+ A  + KE  AR+I+ EM +  + P   TY I+L G  K+G 
Sbjct: 307 VIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGS 366

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A+ +  +++ RG   D V +  LI G C+  +V EA  +  EM  +G  P+D T   
Sbjct: 367 ISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGS 426

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           V+   C+ G     + L+ EM    H P V  Y +L++GLCK  ++ +A ++LD M   G
Sbjct: 427 VVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQG 486

Query: 411 VVPDDITYNILL 422
           V  DD  Y  L+
Sbjct: 487 VALDDFAYRKLI 498



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 177/345 (51%), Gaps = 21/345 (6%)

Query: 104 MMRTNLPTVTLGFYLEILDY-----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           M R++ P + + F+    D+     GY   V+ +N L+  L K G       V+ +    
Sbjct: 1   MRRSSRPDLAIQFF----DWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHS 56

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G     V+F  LI G+CKA            ++   + PDVY ++ LI+GL K+   D A
Sbjct: 57  GCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQA 116

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--LNPDKI 276
             L   M    + P+   + T+I G CK      +G++++AR++++EM   G    PD +
Sbjct: 117 VKLFENMESSRVNPDIFTYNTVISGLCK------SGNLEKARELLEEMIRRGGKSAPDIV 170

Query: 277 TYTILLD-GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           TY  L++ G CK+GD+E AL+I   M   G   D + + ++I   C  G+VVEA  +L+ 
Sbjct: 171 TYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKT 230

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M      PD  T+  ++D FCK G       +L+EM  +  LP V TY  L+NGLC+ GQ
Sbjct: 231 M---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQ 287

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           ++ A  LL+ ++  G +PD I Y  L++G CK G  E+  KL  E
Sbjct: 288 VQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKE 332



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 127/247 (51%), Gaps = 17/247 (6%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS--- 166
           V + FYL  EI+  GY P V  +  L+  LCK G+I++A  +  E   R + A  VS   
Sbjct: 288 VQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINM 347

Query: 167 ------FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
                 +N ++ G  K  ++ +   L S +   G  PDV TY+ LI+GLCK NR+ +A  
Sbjct: 348 VPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACD 407

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L  EM   G  PNDV   +++ G C+ GR+D      +A  +V EM      P+ + YT 
Sbjct: 408 LADEMASLGCFPNDVTLGSVVFGLCRVGRVD------DAWSLVVEMSRKRHAPNVVVYTS 461

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L+DG CK   ++ A  +   M  +G+ LD+ A+  LI     GG+V EA  M  EM+  G
Sbjct: 462 LIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARG 521

Query: 341 LKPDDAT 347
             PD +T
Sbjct: 522 FLPDGST 528



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 137/284 (48%), Gaps = 15/284 (5%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  + +L++ LC+ G+++ A  + +E  ++G     +++ +L++G CK+  ++E  +L
Sbjct: 270 PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKL 329

Query: 187 KSVMEGS---------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
              M             M P ++TY+ ++ GL K+  +  A  L+ ++  RG  P+ V +
Sbjct: 330 VKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTY 389

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            TLIDG CK  R+      +EA  + DEM + G  P+ +T   ++ G C+ G ++ A  +
Sbjct: 390 NTLIDGLCKANRV------REACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSL 443

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             EM ++    + V +T+LI G C+  ++ +A  +L  M   G+  DD  Y  +I     
Sbjct: 444 VVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIH 503

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            G       +  EM + G LP   T   L      +   +  N+
Sbjct: 504 GGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFEWTNL 547



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + + N          E+   G  P+      ++  LC+ G++ DA  +  E  ++ 
Sbjct: 392 LIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR 451

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V + +LI+G CK+  +D+   +   M G G+  D + Y  LI  +    R+ +A 
Sbjct: 452 HAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAM 511

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +  EM  RG  P+     TL +    N
Sbjct: 512 AMYDEMVARGFLPDGSTSKTLEEAAMSN 539


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 9/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L   L++   G  P+   +NVL++ L   G+++ A+ +  E  + GL  +A +++ LI 
Sbjct: 209 ALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIR 268

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C+   LDE  RL   M   G  P + TY+ ++ GLCK  R+ DA  LL  M  + L P
Sbjct: 269 GYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMP 328

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + TLI G+ +       G++ EA  +  E+   GL P  +TY  L+DG C+ GDL+
Sbjct: 329 DLVSYNTLIYGYTR------LGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLD 382

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ ++ EMIK G + D   FT L+ GFC+ G +  A+ +  EML  GL+PD   Y   I
Sbjct: 383 VAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRI 442

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
               K GD    F + +EM + G  P + TYN  ++GL K G LK A+ L+  ML  G+V
Sbjct: 443 VGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 502

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           PD +TY  ++  H   G+      +  E   KG+      YT L+
Sbjct: 503 PDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLI 547



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 174/348 (50%), Gaps = 29/348 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P++  +N +M+ LCK G++ DA+ + D    + L    VS+NTLI G+ +  
Sbjct: 285 EMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLG 344

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E F L + +   G+ P V TY+ LI+GLC+   LD A  L  EM + G  P+   FT
Sbjct: 345 NIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFT 404

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            L+ G CK G + MA                             GD  +A  + +EM   
Sbjct: 405 ILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLAR 464

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD ITY + +DG  K G+L+ A ++ K+M+  G+  D+V +T++I      G + +A
Sbjct: 465 GFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKA 524

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  EML  G+ P   TYT++I  +   G  K       EM   G  P V TYNAL+NG
Sbjct: 525 RAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 584

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           LCK  ++  A      M   G+ P+  TY IL+  +C  G+ ++  +L
Sbjct: 585 LCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRL 632



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 25/388 (6%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDA 64
           TL  Y+T+++ L      S AR LL ++V+K  M                  P LV  + 
Sbjct: 294 TLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLM------------------PDLVSYNT 335

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y  LG + +A   F  LR             LID + R     V +    E++ +G
Sbjct: 336 LIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHG 395

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P V+ F +L+   CK G +  A+ +FDE   RGL     ++ T I G  K  +  + F
Sbjct: 396 PDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAF 455

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            ++  M   G  PD+ TY+  I+GL K   L +A  L+ +M   GL P+ V +T++I  H
Sbjct: 456 GMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAH 515

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                  MAG +++AR +  EM + G+ P  +TYT+L+  +   G L+ A+    EM ++
Sbjct: 516 L------MAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEK 569

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  + + + ALI+G C+  K+ +A +   EM   G+ P+  TYT++I+  C  G  +  
Sbjct: 570 GVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEA 629

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCK 392
            RL K+M      P   T++AL+  L K
Sbjct: 630 LRLYKDMLDREIQPDSCTHSALLKHLNK 657



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 143/252 (56%), Gaps = 16/252 (6%)

Query: 210 CKENRLDDAELLLHEMCERGLTPN----DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
            K++ L+   L+ ++M  +G+ P+    + +   L D   ++  ID+A      R++ + 
Sbjct: 130 AKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRD---RDSSIDVA------REVYNV 180

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   G+ P  +TY  +LD FCK+G ++ AL +  +M K G   ++V +  L++G    G+
Sbjct: 181 MVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGE 240

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + +A+ +++EML++GL+    TY  +I  +C+ G      RL +EM S G +P + TYN 
Sbjct: 241 LEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNT 300

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KG 442
           +M GLCK G++ +A  LLD M++  ++PD ++YN L+ G+ + GN  +   L +E   +G
Sbjct: 301 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRG 360

Query: 443 LVSDYACYTSLV 454
           LV     Y +L+
Sbjct: 361 LVPSVVTYNTLI 372



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 46/236 (19%)

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN------------------ 310
            G    ++TY ++LD   + G + SA  + ++++   ++++N                  
Sbjct: 75  TGFKRSELTYAVILDILARNGLMRSAYCVMEKVV--SVKMENGVVDVLILDLLLWIYAKK 132

Query: 311 -------VAFTALIS-GFC---------------RGGKVVEAERMLREMLKVGLKPDDAT 347
                  + F  ++S G                 R   +  A  +   M++ G++P   T
Sbjct: 133 SMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVT 192

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  ++D FCK G  +   +LL +M+  G LP   TYN L+NGL   G+L+ A  L+  ML
Sbjct: 193 YNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEML 252

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKY 460
            LG+     TY+ L+ G+C+ G  ++  +L  E   +G V     Y +++    K+
Sbjct: 253 RLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKW 308



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
           +R  L    L F+ E+ + G  P+V  +N L++ LCK  K+  A   F E   +G+    
Sbjct: 552 VRGRLKLAILHFF-EMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNK 610

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
            ++  LIN +C   +  E  RL   M    ++PD  T+SAL+  L K+
Sbjct: 611 YTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKD 658


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 177/349 (50%), Gaps = 30/349 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKA 177
           +++++G S S    NV++H  CKEG+++DA     E   + G      +FNTL+NG CKA
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            ++     +  VM   G  PDVYTY+++I+GLCK   + +A   L +M  R  +PN V +
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368

Query: 238 TTLIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCT 268
            TLI   CK  +++ A ++                             + A ++ +EM +
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G  PD+ TY +L+D  C +G L+ AL++ K+M   G     + +  LI GFC+  K+ E
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIRE 488

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           AE +  EM   G+  +  TY  +ID  CK+   +   +L+ +M  +G  P   TYN+L+ 
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLT 548

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             C+ G +K A  ++  M   G  PD +TY  L+ G CK G  E   KL
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 181/369 (49%), Gaps = 46/369 (12%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  GY P VY +N ++  LCK G++K+A    D+   R      V++NTLI+  CK   
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           ++E   L  V+   G+ PDV T+++LI GLC       A  L  EM  +G  P++  +  
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LID  C  G++D      EA  ++ +M  +G     ITY  L+DGFCK   +  A +I  
Sbjct: 441 LIDSLCSKGKLD------EALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFD 494

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM   G+  ++V +  LI G C+  +V +A +++ +M+  G KPD  TY  ++  FC+ G
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGG 554

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV-------- 411
           D K    +++ M S+G  P + TY  L++GLCK G+++ A+ LL ++   G+        
Sbjct: 555 DIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYN 614

Query: 412 ----------------------------VPDDITYNILLEGHCKHGNP--EDFDKLQS-- 439
                                        PD ++Y I+  G C  G P  E  D L    
Sbjct: 615 PVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELL 674

Query: 440 EKGLVSDYA 448
           EKG V +++
Sbjct: 675 EKGFVPEFS 683



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 177/366 (48%), Gaps = 33/366 (9%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P V  FNVL+  LC+  +++ A ++ ++    GL     +F T++ G+ +  +LD 
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDG 242

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLI 241
             R++  M   G      + + +++G CKE R++DA   + EM  + G  P+   F TL+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           +G CK G +  A                             G++KEA + +D+M T   +
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCS 362

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+ +TY  L+   CKE  +E A ++ + +  +GI  D   F +LI G C       A  +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             EM   G +PD+ TY M+ID  C  G       +LK+M   G   +V TYN L++G CK
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
             +++ A  + D M   GV  + +TYN L++G CK    ED  +L  +   +G   D   
Sbjct: 483 ANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFT 542

Query: 450 YTSLVS 455
           Y SL++
Sbjct: 543 YNSLLT 548



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 176/335 (52%), Gaps = 11/335 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           +SP   ++  ++ +L + G   D + + ++    G       F  LI  + + +  DE  
Sbjct: 79  FSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEIL 138

Query: 185 RLKSVM-EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +   M +  G++PD + Y+ ++N L   N L   E+   +M   G+ P+   F  LI  
Sbjct: 139 GVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKA 198

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+      A  ++ A  ++++M + GL PD+ T+T ++ G+ +EGDL+ AL IR++M++
Sbjct: 199 LCR------AHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVE 252

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDATYTMVIDCFCKNGDTK 362
            G    NV+   ++ GFC+ G+V +A   ++EM  + G  PD  T+  +++  CK G  K
Sbjct: 253 FGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVK 312

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               ++  M  +G+ P V TYN++++GLCK G++K A   LD M+     P+ +TYN L+
Sbjct: 313 HAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLI 372

Query: 423 EGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLV 454
              CK    E+  +L    + KG++ D   + SL+
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 163/332 (49%), Gaps = 8/332 (2%)

Query: 100 LIDRMMRTNLPTVTLGF-YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LI+   +  L    LG  +  I D+G  P  + +N +++ L     +K  ++   +    
Sbjct: 124 LIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVW 183

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+     +FN LI   C+A  L     +   M   G+ PD  T++ ++ G  +E  LD A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT-NGLNPDKIT 277
             +  +M E G + ++V    ++ G CK GR++      +A   + EM   +G  PD+ T
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVE------DALNFIQEMSNQDGFFPDQYT 297

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  L++G CK G ++ A++I   M++ G + D   + ++ISG C+ G+V EA   L +M+
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMI 357

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
                P+  TY  +I   CK    +    L + + S G LP V T+N+L+ GLC     +
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR 417

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            A  L + M   G  PD+ TYN+L++  C  G
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 8/281 (2%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V +  + E+   G  P  + +N+L+  LC +GK+ +A  +  +    G   + +++NTLI
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G CKA  + E   +   ME  G+  +  TY+ LI+GLCK  R++DA  L+ +M   G  
Sbjct: 478 DGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQK 537

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   + +L+   C+       GD+K+A  IV  M +NG  PD +TY  L+ G CK G +
Sbjct: 538 PDKFTYNSLLTHFCR------GGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG-LKPDDATYTM 350
           E A  + + +  +GI L   A+  +I G  R  K  EA  + REML+     PD  +Y +
Sbjct: 592 EVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRI 651

Query: 351 VIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           V    C   G  +     L E+   G +P   +   L  GL
Sbjct: 652 VFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1202

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 194/361 (53%), Gaps = 32/361 (8%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V+++NVL+  LCK  ++KDA+ +FDE   R L  + +++NTLI+G+CK  N ++ F+
Sbjct: 584 SPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFK 643

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           ++  M+   + P + T++ L+ GL K   ++DAE +L EM ++G  P+   F+ L DG+ 
Sbjct: 644 VRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYS 703

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
            N + D A                             G +++A +I+      GL P+++
Sbjct: 704 SNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEV 763

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  ++DG+ ++GDL  A      M K+G++ D++A+  LI  FC  G +  AE+ + +M
Sbjct: 764 LYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKM 823

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G+ P   TY ++I  + +  +    F LLKEM  +G +P V +Y  L+N LCK  +L
Sbjct: 824 KLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKL 883

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A ++   M D GV P+   YN+L++G C  G  ED  +   E   KG+  +   Y +L
Sbjct: 884 LEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTL 943

Query: 454 V 454
           +
Sbjct: 944 I 944



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 170/333 (51%), Gaps = 29/333 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  FN L+  L K G ++DA+ V  E   +G    A +F+ L +G+      D    +
Sbjct: 655 PSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGV 714

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                 SG++ + YT S L+N LCKE +++ AE +L     +GL PN+V++ T+IDG+ +
Sbjct: 715 YETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSR 774

Query: 247 NG-------RIDMA----------------------GDMKEARKIVDEMCTNGLNPDKIT 277
            G       +ID                        GDM+ A + V++M   G++P   T
Sbjct: 775 KGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVET 834

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y IL+ G+ ++ + +   D+ KEM   G   + V++  LI+  C+G K++EA+ + R+M 
Sbjct: 835 YNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDME 894

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G+ P+   Y M+ID  C  G  +  FR  +EM   G    + TYN L++GL  +G+L 
Sbjct: 895 DRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLA 954

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            A  +L  +   G+ PD  TYN L+ G+   GN
Sbjct: 955 EAEDMLLEISRKGLKPDVFTYNSLISGYRFAGN 987



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 203/437 (46%), Gaps = 51/437 (11%)

Query: 58   PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
            P L+  + L+      G ++DA      ++   F   A     L D     +     LG 
Sbjct: 655  PSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGV 714

Query: 117  YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
            Y   +D G   + Y  ++L++ LCKEG+I+ A+ +      +GL    V +NT+I+G+ +
Sbjct: 715  YETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSR 774

Query: 177  AKNLDEGFRLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAEL--------------- 220
              +L  G R+K   ME  GM+PD   Y+ LI   C+   +++AE                
Sbjct: 775  KGDL-VGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVE 833

Query: 221  --------------------LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
                                LL EM + G  PN V + TLI+  CK  +      + EA+
Sbjct: 834  TYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSK------LLEAQ 887

Query: 261  KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
             +  +M   G++P+   Y +L+DG C +G +E A    +EM K+GIEL+ V +  LI G 
Sbjct: 888  IVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGL 947

Query: 321  CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
               GK+ EAE ML E+ + GLKPD  TY  +I  +   G+ +    L +EM++ G  P +
Sbjct: 948  SMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTL 1007

Query: 381  ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS- 439
            +TY+ L++   K G      +      ++ + PD + YN +L  +  HG+ +    LQ  
Sbjct: 1008 KTYHLLISLCTKEG----IELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQ 1063

Query: 440  --EKGLVSDYACYTSLV 454
              EK +  D   Y SL+
Sbjct: 1064 MIEKSIGLDKTTYNSLI 1080



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 182/377 (48%), Gaps = 43/377 (11%)

Query: 124  GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
            G  P    +N L+   C+ G +++A+   ++   +G+  +  ++N LI G+ +    D+ 
Sbjct: 792  GMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 851

Query: 184  FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            F L   ME +G  P+V +Y  LIN LCK ++L +A+++  +M +RG++PN  I+  LIDG
Sbjct: 852  FDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDG 911

Query: 244  HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             C  G+I+      +A +  +EM   G+  + +TY  L+DG    G L  A D+  E+ +
Sbjct: 912  CCSKGKIE------DAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISR 965

Query: 304  RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID---------- 353
            +G++ D   + +LISG+   G V     +  EM   G+KP   TY ++I           
Sbjct: 966  KGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEGIELT 1025

Query: 354  ---------------------CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
                                 C+  +GD    F L K+M          TYN+L+ G  K
Sbjct: 1026 KKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLK 1085

Query: 393  HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSEKGLVSDYA 448
             G+L     L+D M    + P+  TY+I+++GHC+     G    + ++Q EKGL+ D  
Sbjct: 1086 VGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQ-EKGLLLDVC 1144

Query: 449  CYTSLVSK-SSKYRQKR 464
                LVS    ++R K 
Sbjct: 1145 IGDELVSGLKEEWRSKE 1161



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 134 VLMHKLCKEGK-IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           +L+  L  E K I +A  +F      G+  ++ S   L++   K K       +   +  
Sbjct: 486 LLLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 545

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           S  RP  + Y   I    K + +     L + M    ++P   I+  LIDG CK      
Sbjct: 546 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCK------ 599

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              MK+A ++ DEM    L P  ITY  L+DG+CK+G+ E +  +R+ M    IE   + 
Sbjct: 600 VRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLIT 659

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+ G  + G V +AE +L EM   G  PD  T++++ D +  N        + +   
Sbjct: 660 FNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAV 719

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             G      T + L+N LCK GQ++ A  +L   +  G+VP+++ YN +++G+ + G+
Sbjct: 720 DSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGD 777



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 183/403 (45%), Gaps = 37/403 (9%)

Query: 35   SKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
            S+KG    A +    +E +G     L  + L+  + +LG +++A Q    ++        
Sbjct: 773  SRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSV 832

Query: 95   RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                 LI    R            E+ D G  P+V  +  L++ LCK  K+ +AQ+V  +
Sbjct: 833  ETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRD 892

Query: 155  FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
               RG+      +N LI+G C    +++ FR    M   G+  ++ TY+ LI+GL    +
Sbjct: 893  MEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGK 952

Query: 215  LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
            L +AE +L E+  +GL P+   + +LI G+        AG+++    + +EM T+G+ P 
Sbjct: 953  LAEAEDMLLEISRKGLKPDVFTYNSLISGY------RFAGNVQRCIALYEEMKTSGIKPT 1006

Query: 275  KITYTILLDGFCKEG-------------------------------DLESALDIRKEMIK 303
              TY +L+    KEG                               D++ A +++K+MI+
Sbjct: 1007 LKTYHLLISLCTKEGIELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIE 1066

Query: 304  RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            + I LD   + +LI G  + GK+ E   ++ EM    ++P+  TY +++   C+  D   
Sbjct: 1067 KSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMG 1126

Query: 364  GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             +   +EM+  G L  V   + L++GL +  + K A  ++  M
Sbjct: 1127 AYVWYREMQEKGLLLDVCIGDELVSGLKEEWRSKEAENVISEM 1169



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 131  VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
             +N L+    K GK+ + + + DE   R +   A +++ ++ GHC+ K+    +     M
Sbjct: 1075 TYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREM 1134

Query: 191  EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            +  G+  DV     L++GL +E R  +AE ++ EM  R L   DVI
Sbjct: 1135 QEKGLLLDVCIGDELVSGLKEEWRSKEAENVISEMNGRKL--GDVI 1178


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 176/309 (56%), Gaps = 6/309 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +N+L++  CK G +K+A  V +   +  L     ++N LING C    ++E 
Sbjct: 273 GLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+L+  ME   + PDV +Y+ LING  + +++ +A  LL EM E+G+ PN V    ++  
Sbjct: 333 FKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKW 392

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G++D      +A   + +M  +G +PD +TY  L++G+CK G++  A     EM +
Sbjct: 393 YCKEGKMD------DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR 446

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +++D+V    ++   CR  K+ EA ++L    K G   D+ +Y  +I  + K+G+   
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDR 506

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L  EM+    +P+  TYN ++ GLC+ G+ + A   L+ +L+ G++PD+ TYN +L 
Sbjct: 507 ALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILH 566

Query: 424 GHCKHGNPE 432
           G+C+ G+ E
Sbjct: 567 GYCREGDVE 575



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 44/367 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V+ +N+L++ LC EG+I++A  + DE     L    VS+NTLING  +   + E F+L
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G++P+  T++ ++   CKE ++DDA   + +M E G +P+ V + TLI+G+CK
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 AG+M EA + +DEM    +  D +T   +L   C+E  LE A  +     KRG 
Sbjct: 431 ------AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 307 ELDNVAFTALISGF-----------------------------------CRGGKVVEAER 331
            +D V++  LI G+                                   C+ GK  +A  
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAIS 544

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            L E+L+ GL PD+ TY  ++  +C+ GD +  F+   +M  +   P V T N L+ GLC
Sbjct: 545 KLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYA 448
             G L+ A  L +T +  G   D +TYN L+   CK G  +D   L S   EK L  D+ 
Sbjct: 605 MEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 449 CYTSLVS 455
            Y ++++
Sbjct: 665 TYNAIIT 671



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 199/439 (45%), Gaps = 46/439 (10%)

Query: 19  AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           +H+  S A+ LL   ++         L  SIL  R T     +LD  +  YV  G    A
Sbjct: 100 SHRKFSDAKSLLLGFIA---TDRRHDLHLSIL--RLTSPSKALLDTAIGAYVQSGQPHHA 154

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
            Q F+ +++   R     C  L++ ++R                Y  S SV         
Sbjct: 155 FQIFKKMKRLRLRPNLLTCNTLLNSLVR----------------YPSSHSVSF------- 191

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
                    ++  F++  K G+     +FN +I G+C      +     +VM      PD
Sbjct: 192 ---------SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPD 242

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             TY+ +++ LCK+ RL DA  LL +M  RGL PN   +  L+ G+CK       G +KE
Sbjct: 243 NVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCK------MGWLKE 296

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A  +++ M  N L PD  TY +L++G C EG +E A  +R EM    +  D V++  LI+
Sbjct: 297 AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLIN 356

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G     K+ EA ++L EM + G+KP+  T+ +++  +CK G        + +M   G  P
Sbjct: 357 GCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSP 416

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              TYN L+NG CK G +  A   +D M    +  D +T N +L   C+    E+  KL 
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476

Query: 439 S---EKGLVSDYACYTSLV 454
           S   ++G   D   Y +L+
Sbjct: 477 SSARKRGYFIDEVSYGTLI 495



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 156/327 (47%), Gaps = 29/327 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P+    N+++   CKEGK+ DA     +  + G     V++NTLING+CKA 
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E FR    M    M+ D  T + ++  LC+E +L++A  LL    +RG   ++V + 
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           TLI G+ K+G +D A                             G  ++A   ++E+  +
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES 552

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD+ TY  +L G+C+EGD+E A     +M++   + D      L+ G C  G + +A
Sbjct: 553 GLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKA 612

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++    +  G   D  TY  +I   CK G     F LL EM      P   TYNA++  
Sbjct: 613 LKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDI 416
           L   G+++ A   +  ML+ G +P  +
Sbjct: 673 LTDSGRIREAEEFMSKMLEKGXLPXQV 699



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 18/215 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+ ++++  + P V+  N+L+  LC EG ++ A  +F+ +  +G     V++NTLI   C
Sbjct: 580 FHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLC 639

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   LD+ F L S ME   + PD YTY+A+I  L    R+ +AE  + +M E+G  P  V
Sbjct: 640 KEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQV 699

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           +                   +     +V    +   +   + Y+  +   C EG  + A+
Sbjct: 700 L------------------QLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAM 741

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
            I  E  ++GI +D   +  L+ G  +  K +  E
Sbjct: 742 RIFGESKQKGITVDKSTYINLMDGLIKRRKSISKE 776


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 188/381 (49%), Gaps = 7/381 (1%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +  RG     +    + I Y  +G + D  +  + + +  F +    C  +I        
Sbjct: 222 MRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGF 281

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
            +    ++ + ++ G  P++  F  L++ LCK G IK A  + +E  K+G      +   
Sbjct: 282 ASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTA 341

Query: 170 LINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           LI+G CK    ++ FRL   ++     +P+V+TY+++I+G CKE++L+ AE+LL  M E+
Sbjct: 342 LIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQ 401

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL PN   +T LIDGH K      AG+ ++A +++D M   G + +  TY   +D  CK+
Sbjct: 402 GLVPNTKTYTCLIDGHSK------AGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKK 455

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G    A  + K+  + G++ D V +T LIS  CR     EA     +M K G++PD  TY
Sbjct: 456 GRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTY 515

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +I  F +    +   +L  E    G +P  ETY +++ G C+   +  A    + M D
Sbjct: 516 NTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSD 575

Query: 409 LGVVPDDITYNILLEGHCKHG 429
            G  PD +TY  L+ G CK  
Sbjct: 576 HGCTPDSLTYGALISGLCKES 596



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 166/327 (50%), Gaps = 10/327 (3%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            +++   C++G        FD++ + GL    ++F +LING CK  ++ + F +   M  
Sbjct: 270 TLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVK 329

Query: 193 SGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            G +P+VYT++ALI+GLCK+   + A  L L  +      PN   +T++I G+CK  +++
Sbjct: 330 KGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLN 389

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                  A  ++  M   GL P+  TYT L+DG  K G+ E A ++   M K G   +  
Sbjct: 390 ------RAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIF 443

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            + A I   C+ G+ +EA ++L++  ++GL+ D  TYT++I   C+  DT+       +M
Sbjct: 444 TYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKM 503

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G  P + TYN L+    +  +++ +  L    + LG+VP   TY  ++ G+C+  N 
Sbjct: 504 FKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNV 563

Query: 432 E---DFDKLQSEKGLVSDYACYTSLVS 455
                F    S+ G   D   Y +L+S
Sbjct: 564 SLALKFFNRMSDHGCTPDSLTYGALIS 590



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 163/348 (46%), Gaps = 33/348 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           LID + +          +L+++    Y P+V+ +  ++H  CKE K+  A+M+     ++
Sbjct: 342 LIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQ 401

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++  LI+GH KA N ++ + L  +M   G   +++TY+A I+ LCK+ R  +A
Sbjct: 402 GLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEA 461

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNG----------RIDMAG-------------- 254
             LL +    GL  + V +T LI   C+            ++  AG              
Sbjct: 462 CKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAA 521

Query: 255 -----DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 M+E+ K+  E    GL P K TYT ++ G+C++ ++  AL     M   G   D
Sbjct: 522 FSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPD 581

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           ++ + ALISG C+  K+ EA ++   M+  GL P + T   +   +CK  D+ T   +L+
Sbjct: 582 SLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILE 641

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
             R D  L  + T N L+  LC   ++  A +    +LD     D +T
Sbjct: 642 --RLDKKL-WIRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVT 686



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 9/220 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + R       L F+ ++   G  P ++ +N L+    ++ ++++++ +F E    G
Sbjct: 483 LISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLG 542

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T  ++ ++I G+C+ +N+    +  + M   G  PD  TY ALI+GLCKE++LD+A 
Sbjct: 543 LVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEAC 602

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M ++GL+P +V   TL   +CK    D A  M    ++  ++    +N       
Sbjct: 603 QLYEAMVDKGLSPCEVTRLTLAYEYCKQD--DSATAMVILERLDKKLWIRTVN------- 653

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            L+   C E  +  A+    +++ +   +D V  TA  + 
Sbjct: 654 TLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTA 693



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ L F+  + D+G +P    +  L+  LCKE K+ +A  +++    +GL    V+  TL
Sbjct: 564 SLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTL 623

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              +CK    D+      ++E    +  + T + LI  LC E ++  A L  H++ ++  
Sbjct: 624 AYEYCKQ---DDSATAMVILERLDKKLWIRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQ 680

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             + V  T       ++ +  +  D+ E
Sbjct: 681 NVDRVTLTAFTTACYESNKYALVSDLSE 708


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 190/380 (50%), Gaps = 49/380 (12%)

Query: 118 LEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE++D     G+ P +Y +N L+  LCK G++ +A  V ++  +R      V++NT+I+ 
Sbjct: 321 LEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIIST 380

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK   ++E  +L  V+ G G+ PDV TY++LI GLC       A  L  EM  +G  P+
Sbjct: 381 LCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPD 440

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           +  +  LID  C  G+      ++EA  ++ EM  +G   + ITY  L+DGFCK   +  
Sbjct: 441 EFTYNMLIDSLCFRGK------LQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAE 494

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A +I  +M  +G+  ++V +  LI G C+  +V EA +++ +M+  GL+PD  TY  ++ 
Sbjct: 495 AEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLT 554

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT-------- 405
            FCK GD K    +++ M SDG  P + TY  L+ GLCK G+++ A  LL T        
Sbjct: 555 YFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINL 614

Query: 406 ---------------------------MLDLGVVPDDITYNILLEGHCKHGNP----EDF 434
                                      M++    PD +TY I+  G C+ G P     DF
Sbjct: 615 TPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDF 674

Query: 435 DKLQSEKGLVSDYACYTSLV 454
                E+G V +++ +  L 
Sbjct: 675 VMEMLERGYVPEFSSFYMLA 694



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 6/317 (1%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G+ P  Y FN+L++ L K G +K A  V D   + G      ++N+LI+G CK   +
Sbjct: 293 LREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEV 352

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DE  ++ + M      P+  TY+ +I+ LCKEN++++A  L   +  +G+ P+   + +L
Sbjct: 353 DEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSL 412

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G C      ++ +   A ++  EM T G +PD+ TY +L+D  C  G L+ AL++ KE
Sbjct: 413 IQGLC------LSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKE 466

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G   + + +  LI GFC+  ++ EAE +  +M   G+  +  TY  +ID  CK+  
Sbjct: 467 MEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSER 526

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +   +L+ +M  +G  P   TYN+L+   CK G +K A  ++ TM   G  PD +TY  
Sbjct: 527 VEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGT 586

Query: 421 LLEGHCKHGNPEDFDKL 437
           L+ G CK G  E   KL
Sbjct: 587 LIAGLCKAGRVEAATKL 603



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 171/354 (48%), Gaps = 7/354 (1%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           LG +D+A++    + +            +I  + + N         L +   G  P V  
Sbjct: 349 LGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCT 408

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N L+  LC       A  ++ E   +G H    ++N LI+  C    L E   L   ME
Sbjct: 409 YNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEME 468

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            SG   +V TY+ LI+G CK  R+ +AE +  +M  +G++ N V + TLIDG CK+ R++
Sbjct: 469 VSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVE 528

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 EA +++D+M   GL PDK TY  LL  FCK GD++ A DI + M   G E D V
Sbjct: 529 ------EASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIV 582

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI+G C+ G+V  A ++LR +   G+      Y  VI    +   +K   RL +EM
Sbjct: 583 TYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREM 642

Query: 372 RSDGHLPAVETYNALMNGLCK-HGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                 P   TY  +  GLC+  G +  A   +  ML+ G VP+  ++ +L EG
Sbjct: 643 IEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEG 696



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 178/375 (47%), Gaps = 45/375 (12%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P V  FN+L+  LC+  +I+ A ++ +E    GL     +F T++ G  +  N
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGN 245

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFT 238
           LD   R+K  M  +G      T + L+NG CKE R+++A   + EM  R G  P+   F 
Sbjct: 246 LDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFN 305

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G  K G +      K A +++D M   G +PD  TY  L+ G CK G+++ A+ + 
Sbjct: 306 MLVNGLSKTGHV------KHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVL 359

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERM-------------------------- 332
            +MI+R    + V +  +IS  C+  +V EA ++                          
Sbjct: 360 NQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLS 419

Query: 333 ---------LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
                     +EM   G  PD+ TY M+ID  C  G  +    LLKEM   G    V TY
Sbjct: 420 RNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITY 479

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           N L++G CK+ ++  A  + D M   GV  + +TYN L++G CK    E+  +L  +   
Sbjct: 480 NTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIM 539

Query: 441 KGLVSDYACYTSLVS 455
           +GL  D   Y SL++
Sbjct: 540 EGLRPDKFTYNSLLT 554



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 172/355 (48%), Gaps = 18/355 (5%)

Query: 112 VTLGFYLEIL--------DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
            + G Y EIL        ++G   + + +N L++ L    K+K  ++       RG+   
Sbjct: 135 ASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPD 194

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
             +FN LI   C+A  +     L   ME  G+ PD  T++ ++ G  +E  LD A  +  
Sbjct: 195 VSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKE 254

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYTILL 282
           +M E G    +V    L++G CK GRI+      EA + ++EM    G  PDK T+ +L+
Sbjct: 255 QMVEAGCVVTNVTVNVLVNGFCKEGRIE------EALRFIEEMSLREGFFPDKYTFNMLV 308

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G  K G ++ AL++   M++ G + D   + +LISG C+ G+V EA ++L +M++    
Sbjct: 309 NGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCS 368

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  TY  +I   CK    +   +L   +   G LP V TYN+L+ GLC       A  L
Sbjct: 369 PNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMEL 428

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
              M   G  PD+ TYN+L++  C  G  ++   L  E    G   +   Y +L+
Sbjct: 429 YKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLI 483



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 7/306 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           TV +  Y E+   G  P  + +N+L+  LC  GK+++A  +  E    G     +++NTL
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+G CK K + E   +   ME  G+  +  TY+ LI+GLCK  R+++A  L+ +M   GL
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+   + +L+   CK      AGD+K+A  IV  M ++G  PD +TY  L+ G CK G 
Sbjct: 543 RPDKFTYNSLLTYFCK------AGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGR 596

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +E+A  + + +  +GI L   A+  +I    R  +  EA R+ REM++    PD  TY +
Sbjct: 597 VEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKI 656

Query: 351 VIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           V    C+  G        + EM   G++P   ++  L  GL     +     L+D +++ 
Sbjct: 657 VFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEK 716

Query: 410 GVVPDD 415
               D+
Sbjct: 717 AKFSDN 722


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 220/454 (48%), Gaps = 30/454 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPGLVLDA 64
           L+ Y+ +++        S A  LL  ++ K G   S    +S+L     G  +   V  A
Sbjct: 45  LYTYNILINCFCRRSQISLALALLGKMM-KLGYEPSIVTLSSLLNGYCHGKRISDAV--A 101

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+   V++G+  D I    L+   +    A     L+DRM++                 G
Sbjct: 102 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR----------------G 145

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P++  + V+++ LCK G I  A  + ++     + A  V FNT+I+  CK +++D+  
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M E+ + PN V F  LID  
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+        EA K+ D+M    ++PD  TY  L++GFC    L+ A  + + M+ +
Sbjct: 266 VKEGKF------VEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 319

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
               D   +  LI GFC+  +V +   + REM   GL  D  TYT +I     +GD    
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            ++ K+M SDG  P + TY+ L++GLC +G+L+ A  + D M    +  D   Y  ++EG
Sbjct: 380 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            CK G  +D   L    S KG+  +   Y +++S
Sbjct: 440 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS 473



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 193/358 (53%), Gaps = 12/358 (3%)

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           I +M + +L  ++LG  ++ L  G S ++Y +N+L++  C+  +I  A  +  +  K G 
Sbjct: 20  IAKMKKFDL-VISLGEKMQRL--GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGY 76

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
             + V+ ++L+NG+C  K + +   L   M   G RPD  T++ LI+GL   N+  +A  
Sbjct: 77  EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 136

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L+  M +RG  PN V +  +++G CK G ID+A ++      +++M    +  D + +  
Sbjct: 137 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL------LNKMEAAKIEADVVIFNT 190

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++D  CK   ++ AL++ KEM  +GI  + V +++LIS  C  G+  +A ++L +M++  
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  T+  +ID F K G      +L  +M      P + TYN+L+NG C H +L  A 
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 310

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
            + + M+     PD  TYN L++G CK    ED  +L    S +GLV D   YT+L+ 
Sbjct: 311 QMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 171/347 (49%), Gaps = 6/347 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA+  F+ +     R        LI  +      +       ++++   +P++  FN 
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+    KEGK  +A+ + D+  KR +     ++N+LING C    LD+  ++   M    
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PD+ TY+ LI G CK  R++D   L  EM  RGL  + V +TTLI G   +G      
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG------ 374

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D   A+K+  +M ++G+ PD +TY+ILLDG C  G LE AL++   M K  I+LD   +T
Sbjct: 375 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 434

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            +I G C+ GKV +   +   +   G+KP+  TY  +I   C     +  + LLK+M+ D
Sbjct: 435 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 494

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           G LP   TYN L+    + G    +  L+  M     V D  T  ++
Sbjct: 495 GPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 541



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   F  L+    K  + D+   + E      +M   G++ +  TY IL++ FC+   +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGE------KMQRLGISHNLYTYNILINCFCRRSQI 61

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             AL +  +M+K G E   V  ++L++G+C G ++ +A  ++ +M+++G +PD  T+T +
Sbjct: 62  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 121

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I     +        L+  M   G  P + TY  ++NGLCK G +  A  LL+ M    +
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 181

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
             D + +N +++  CK+ + +D   L  E   KG+  +   Y+SL+S
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 228


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 182/359 (50%), Gaps = 43/359 (11%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +T GF +  +IL  GY PS    N L+  LC +G++K A    D+   +G     VS+ T
Sbjct: 358 ITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYAT 417

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     +L   ++G   +P+V  YS +I+ LCK   + +A  L  EM  +G
Sbjct: 418 LINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 477

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++ + V ++TLI G C      + G +KEA  +++EM    +NPD  TYTIL+D   KEG
Sbjct: 478 ISADVVTYSTLIYGFC------IVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEG 531

Query: 290 DLESALDIRKEMIKR-----------------------------------GIELDNVAFT 314
            ++ A  +   M+K                                    G+  D   +T
Sbjct: 532 KVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYT 591

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI+GFC+   V EA  + +EM +  + PD  TY+ ++D  CK+G     + L+ EMR  
Sbjct: 592 ILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR 651

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           G    V TYN+L++GLCK+G L  A  L + M D G+ P+  T+ ILL+G CK G  +D
Sbjct: 652 GQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKD 710



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 170/307 (55%), Gaps = 6/307 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V +++ ++  LCK   + +A  +F E   +G+ A  V+++TLI G C    L E   L
Sbjct: 445 PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGL 504

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    + PDV TY+ L++ L KE ++ +A+ +L  M +  + P+   + TL++G+  
Sbjct: 505 LNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYL- 563

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                +  ++K+A+ + + M   G+ PD  TYTIL++GFCK   ++ AL++ KEM ++ +
Sbjct: 564 -----LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNM 618

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +++L+ G C+ G++     ++ EM   G   D  TY  +ID  CKNG       
Sbjct: 619 VPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIA 678

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  +M+  G  P   T+  L++GLCK G+LK+A  +   +L  G   D   YN+++ GHC
Sbjct: 679 LFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHC 738

Query: 427 KHGNPED 433
           K G  E+
Sbjct: 739 KQGLLEE 745



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +G   E++    +P V  + +L+  L KEGK+K+A+ V     K  +     ++NTL+NG
Sbjct: 502 IGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNG 561

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +     + +   + + M   G+ PDV+TY+ LING CK   +D+A  L  EM ++ + P+
Sbjct: 562 YLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPD 621

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V +++L+DG CK+GRI    D+      +DEM   G   D ITY  L+DG CK G L+ 
Sbjct: 622 TVTYSSLVDGLCKSGRISYVWDL------IDEMRDRGQPADVITYNSLIDGLCKNGHLDK 675

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+ +  +M  +GI  +   FT L+ G C+GG++ +A+ + +++L  G   D   Y ++I 
Sbjct: 676 AIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIY 735

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             CK G  +    +L +M  +G +P   T++ ++N L K  +   A  LL  M+  G++
Sbjct: 736 GHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGLL 794



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 196/401 (48%), Gaps = 6/401 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   L  +G  L  +    L+     +G    AI+  R +     +     
Sbjct: 390 KGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM 449

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID + +  L +   G + E+   G S  V  ++ L++  C  GK+K+A  + +E  
Sbjct: 450 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMV 509

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            + ++    ++  L++   K   + E   + +VM  + ++PDV+TY+ L+NG      + 
Sbjct: 510 LKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVK 569

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ + + M   G+TP+   +T LI+G CK+  +D      EA  +  EM    + PD +
Sbjct: 570 KAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVD------EALNLFKEMHQKNMVPDTV 623

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY+ L+DG CK G +    D+  EM  RG   D + + +LI G C+ G + +A  +  +M
Sbjct: 624 TYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKM 683

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G++P+  T+T+++D  CK G  K    + +++ + G+   V  YN ++ G CK G L
Sbjct: 684 KDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLL 743

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           + A  +L  M + G +P+ +T++I++    K    +  +KL
Sbjct: 744 EEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKL 784



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 197/396 (49%), Gaps = 8/396 (2%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           S S+   IL+ RG     + L+ L+      G + +A+     L    F++       LI
Sbjct: 47  SLSVLTKILK-RGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLI 105

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           + + R       + F  +I      P+V ++N ++  LCK   + +A  +F E   +G+ 
Sbjct: 106 NGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS 165

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           A  V+++TLI G C    L E   L +VM    + P+V TY+ L++ LCKE ++ +A+ +
Sbjct: 166 ANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSV 225

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L  M +  +  N + ++TL+DG+       +  ++K+A+ + + M   G+ PD  +Y I+
Sbjct: 226 LAVMLKACVKSNVITYSTLMDGYF------LVYEVKKAQHVFNAMSLMGVTPDVHSYNIM 279

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           ++GFCK   ++ AL++ KEMI        + F  ++  F +      A  +   +   G+
Sbjct: 280 INGFCKIKRVDKALNLFKEMILSRFP-PIIQFNKILDSFAKMKHYSTAVSLSHRLELKGI 338

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           +PD  T  ++I+CFC  G    GF +L ++   G+ P+  T N L+ GLC  GQ+K A  
Sbjct: 339 QPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALH 398

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             D +L  G   + ++Y  L+ G CK G+     KL
Sbjct: 399 FHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKL 434



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 170/369 (46%), Gaps = 45/369 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P V+ +N++++  CK  ++  A  +F E          + FN +++   K K+    
Sbjct: 268 GVTPDVHSYNIMINGFCKIKRVDKALNLFKEM-ILSRFPPIIQFNKILDSFAKMKHYSTA 326

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   +E  G++PD++T + LIN  C   ++     +L ++ +RG  P+ V   TLI G
Sbjct: 327 VSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKG 386

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK---- 299
            C      + G +K+A    D++   G   ++++Y  L++G CK GD   A+ + +    
Sbjct: 387 LC------LKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDG 440

Query: 300 -------------------------------EMIKRGIELDNVAFTALISGFCRGGKVVE 328
                                          EM  +GI  D V ++ LI GFC  GK+ E
Sbjct: 441 RLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKE 500

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L EM+   + PD  TYT+++D   K G  K    +L  M      P V TYN LMN
Sbjct: 501 AIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMN 560

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           G     ++K A  + + M  +GV PD  TY IL+ G CK    ++   L  E   K +V 
Sbjct: 561 GYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVP 620

Query: 446 DYACYTSLV 454
           D   Y+SLV
Sbjct: 621 DTVTYSSLV 629



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 8/215 (3%)

Query: 213 NRLDDAELL--LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
             +DDA  L  L ++ +RG  P+ V   TLI G C      + G +KEA    D++   G
Sbjct: 40  QNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLC------LKGQVKEALHFHDKLLAQG 93

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
              ++++Y  L++G C+ GD  +A+   +++  R  + +   +  +I   C+   V EA 
Sbjct: 94  FQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAY 153

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  EM   G+  +  TY+ +I  FC  G  K    LL  M      P V TYN L++ L
Sbjct: 154 GLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDAL 213

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           CK G++K A  +L  ML   V  + ITY+ L++G+
Sbjct: 214 CKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGY 248



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 72/131 (54%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D G  P+ + F +L+  LCK G++KDAQ VF +   +G
Sbjct: 663 LIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 722

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            H     +N +I GHCK   L+E   + S ME +G  P+  T+  +IN L K++  D AE
Sbjct: 723 YHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAE 782

Query: 220 LLLHEMCERGL 230
            LL +M  RGL
Sbjct: 783 KLLRQMIARGL 793



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%)

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +N D      +L ++   G+ P   T N L+ GLC  GQ+K A    D +L  G   + +
Sbjct: 40  QNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQV 99

Query: 417 TYNILLEGHCKHGN 430
           +Y  L+ G C+ G+
Sbjct: 100 SYATLINGVCRIGD 113


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 57  LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +V  ++++        +D A++    + K+      R    ++     +  P   +G
Sbjct: 231 LPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIG 290

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  ++   G  P V  +N LM  LCK G+  +A+ +FD   KRGL     ++ TL+ G+ 
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               L E   L  +M  +G+ P+ Y +S LI    K+ ++D A L+  +M ++GL P+ V
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T+I   CK+GR++      +A +  ++M    L+P  I Y  L+   C     + A 
Sbjct: 411 TYGTVIGILCKSGRVE------DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  EM+ RGI LD + F ++I   C+ G+V+E+E++   M+++G+KP+  TY+ +ID +
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C  G      +LL  M S G  P   TYN L+NG CK  ++++A +L   M   GV PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 416 ITYNILLEG 424
           ITYNI+L+G
Sbjct: 585 ITYNIILQG 593



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 162/311 (52%), Gaps = 6/311 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  +++   KEG +  A   + E   RG+    V++N++I   CKA+ +D+   +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEV 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  +G+ P+  TY+++++G C   +  +A   L +M   G+ P+ V + +L+D  CK
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NGR        EARK+ D M   GL P+  TY  LL G+  +G L     +   M++ GI
Sbjct: 317 NGRC------TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             ++  F+ LI  + + GKV +A  +  +M + GL PD  TY  VI   CK+G  +   R
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             ++M  +   P    YN+L++ LC   +   A  L+  MLD G+  D I +N +++ HC
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 427 KHGNPEDFDKL 437
           K G   + +KL
Sbjct: 491 KEGRVIESEKL 501



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 175/369 (47%), Gaps = 34/369 (9%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G Y E+LD G  P+V  +N ++  LCK   +  A  V     K G+     ++N++++G+
Sbjct: 220 GTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C +    E       M   G+ PDV TY++L++ LCK  R  +A  +   M +RGL P  
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 235 VIFTTLIDGHCKNGR-IDM----------------------------AGDMKEARKIVDE 265
             + TL+ G+   G  ++M                             G + +A  +  +
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GLNPD +TY  ++   CK G +E A+   ++MI   +   N+ + +LI   C   K
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
             +A+ ++ EML  G+  D   +  +ID  CK G      +L   M   G  P + TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYST 519

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           L++G C  G++  A  LL +M+ +G+ PD +TYN L+ G+CK    ED    F +++S  
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES-S 578

Query: 442 GLVSDYACY 450
           G+  D   Y
Sbjct: 579 GVSPDIITY 587



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 171/331 (51%), Gaps = 9/331 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ YVF++L+    K+GK+  A +VF +  ++GL+   V++ T+I   CK+  +++ 
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R    M    + P    Y++LI+ LC  ++ D A+ L+ EM +RG+  + + F ++ID 
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDS 488

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ P+ ITY+ L+DG+C  G ++ A  +   M+ 
Sbjct: 489 HCKEGRV------IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVS 542

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+C+  ++ +A  + REM   G+ PD  TY +++    +   T  
Sbjct: 543 VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAA 602

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+     A  +   +    +  +  T+NI++ 
Sbjct: 603 AKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 662

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
              K G     +D     S  GLV D   Y+
Sbjct: 663 ALLKVGRNDEAKDLFAALSANGLVPDVRTYS 693



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 160/317 (50%), Gaps = 13/317 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +     ++  LI   C
Sbjct: 44  ELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTYGILIGSCC 102

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
            A  LD GF     +   G R D   ++ L+ GLC + R  DA +++L  M + G  PN 
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLE 292
             +  L+ G C   R       +EA +++  M  +G +  PD ++YT +++GF KEGDL+
Sbjct: 163 FSYNILLKGLCDENR------SQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLD 216

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A     EM+ RGI  + V + ++I+  C+   + +A  +L  M+K G+ P+  TY  ++
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +C +G  K     LK+M SDG  P V TYN+LM+ LCK+G+   A  + D+M   G+ 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK 336

Query: 413 PDDITYNILLEGHCKHG 429
           P+  TY  LL+G+   G
Sbjct: 337 PEITTYGTLLQGYATKG 353



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 207/440 (47%), Gaps = 26/440 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           Y++++ +L  +   ++AR +   + +K+G+    + + ++L+                  
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V   L+  Y   G +D A+  F  +R+            +I  + ++   
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D   SP   V+N L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++P++ TYS LI+G C   ++D+A  LL  M   G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + TLI+G+CK  R      M++A  +  EM ++G++PD ITY I+L G  +   
Sbjct: 546 KPDCVTYNTLINGYCKISR------MEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + + G +L+   +  ++ G C+     EA RM + +    L+ +  T+ +
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I    K G       L   + ++G +P V TY+ +   L + G L+  + L  +M + G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 411 VVPDDITYNILLEGHCKHGN 430
              +    N ++    + G+
Sbjct: 720 CTANSRMLNSIVRKLLQRGD 739



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 1/216 (0%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M  +  L AS++   G     +  + L+  Y  +  ++DA+  FR +             
Sbjct: 530 MDEATKLLASMVSV-GMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            ++  + +T         Y+ I + G    +  +N+++H LCK     +A  +F      
Sbjct: 589 IILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 648

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            L     +FN +I    K    DE   L + +  +G+ PDV TYS +   L ++  L++ 
Sbjct: 649 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEEL 708

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + L   M E G T N  +  +++    + G I  AG
Sbjct: 709 DDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAG 744



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATY 348
           E A  +  E+++RG           ++   R        R  R M + G   + P+  TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNR-MARAGADEVTPNLCTY 94

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTML 407
            ++I   C  G    GF  L  +   G       +  L+ GLC   +  +A +++L  M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 408 DLGVVPDDITYNILLEGHCKHGNPED 433
            LG +P+  +YNILL+G C     ++
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQE 180


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 177/349 (50%), Gaps = 30/349 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKA 177
           +++++G S S    NV++H  CKEG+++DA     E   + G      +FNTL+NG CKA
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            ++     +  VM   G  PDVYTY+++I+GLCK   + +A  +L +M  R  +PN V +
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368

Query: 238 TTLIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCT 268
            TLI   CK  +++ A ++                             + A ++ +EM +
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G  PD+ TY +L+D  C +G L+ AL++ K+M   G     + +  LI GFC+  K  E
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           AE +  EM   G+  +  TY  +ID  CK+   +   +L+ +M  +G  P   TYN+L+ 
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             C+ G +K A  ++  M   G  PD +TY  L+ G CK G  E   KL
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 181/369 (49%), Gaps = 46/369 (12%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  GY P VY +N ++  LCK G++K+A  V D+   R      V++NTLI+  CK   
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           ++E   L  V+   G+ PDV T+++LI GLC       A  L  EM  +G  P++  +  
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LID  C  G++D      EA  ++ +M  +G     ITY  L+DGFCK      A +I  
Sbjct: 441 LIDSLCSKGKLD------EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM   G+  ++V +  LI G C+  +V +A +++ +M+  G KPD  TY  ++  FC+ G
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGG 554

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV-------- 411
           D K    +++ M S+G  P + TY  L++GLCK G+++ A+ LL ++   G+        
Sbjct: 555 DIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYN 614

Query: 412 ----------------------------VPDDITYNILLEGHCKHGNP--EDFDKLQS-- 439
                                        PD ++Y I+  G C  G P  E  D L    
Sbjct: 615 PVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELL 674

Query: 440 EKGLVSDYA 448
           EKG V +++
Sbjct: 675 EKGFVPEFS 683



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 177/366 (48%), Gaps = 33/366 (9%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P V  FNVL+  LC+  +++ A ++ ++    GL     +F T++ G+ +  +LD 
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLI 241
             R++  M   G      + + +++G CKE R++DA   + EM  + G  P+   F TL+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           +G CK G +  A                             G++KEA +++D+M T   +
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+ +TY  L+   CKE  +E A ++ + +  +GI  D   F +LI G C       A  +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             EM   G +PD+ TY M+ID  C  G       +LK+M   G   +V TYN L++G CK
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
             + + A  + D M   GV  + +TYN L++G CK    ED  +L  +   +G   D   
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYT 542

Query: 450 YTSLVS 455
           Y SL++
Sbjct: 543 YNSLLT 548



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 177/335 (52%), Gaps = 11/335 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           +SP   ++  ++ +L + G   D + + ++           +F  LI  + + +  DE  
Sbjct: 79  FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138

Query: 185 RLKSVM-EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +   M +  G++PD + Y+ ++N L   N L   E+   +M   G+ P+   F  LI  
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+      A  ++ A  ++++M + GL PD+ T+T ++ G+ +EGDL+ AL IR++M++
Sbjct: 199 LCR------AHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVE 252

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDATYTMVIDCFCKNGDTK 362
            G    NV+   ++ GFC+ G+V +A   ++EM  + G  PD  T+  +++  CK G  K
Sbjct: 253 FGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVK 312

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               ++  M  +G+ P V TYN++++GLCK G++K A  +LD M+     P+ +TYN L+
Sbjct: 313 HAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372

Query: 423 EGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLV 454
              CK    E+  +L    + KG++ D   + SL+
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 156/311 (50%), Gaps = 7/311 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I ++G  P  + +N +++ L     +K  ++   +    G+     +FN LI   C+A  
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L     +   M   G+ PD  T++ ++ G  +E  LD A  +  +M E G + ++V    
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCT-NGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++ G CK GR++      +A   + EM   +G  PD+ T+  L++G CK G ++ A++I 
Sbjct: 265 IVHGFCKEGRVE------DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIM 318

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M++ G + D   + ++ISG C+ G+V EA  +L +M+     P+  TY  +I   CK 
Sbjct: 319 DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKE 378

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +    L + + S G LP V T+N+L+ GLC     + A  L + M   G  PD+ TY
Sbjct: 379 NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTY 438

Query: 419 NILLEGHCKHG 429
           N+L++  C  G
Sbjct: 439 NMLIDSLCSKG 449



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 140/281 (49%), Gaps = 8/281 (2%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V +  + E+   G  P  + +N+L+  LC +GK+ +A  +  +    G   + +++NTLI
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G CKA    E   +   ME  G+  +  TY+ LI+GLCK  R++DA  L+ +M   G  
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   + +L+   C+       GD+K+A  IV  M +NG  PD +TY  L+ G CK G +
Sbjct: 538 PDKYTYNSLLTHFCR------GGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA-TYTM 350
           E A  + + +  +GI L   A+  +I G  R  K  EA  + REML+    P DA +Y +
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRI 651

Query: 351 VIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           V    C   G  +     L E+   G +P   +   L  GL
Sbjct: 652 VFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 197/395 (49%), Gaps = 25/395 (6%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL+   V++G+  D I    L+   +    A     L+DRM++                 
Sbjct: 100 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR---------------- 143

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  + V+++ LCK G I  A  + ++     + A  V FNT+I+  CK +++D+ 
Sbjct: 144 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 203

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME  G+RP+V TYS+LI+ LC   R  DA  LL +M E+ + PN V F  LID 
Sbjct: 204 LNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDA 263

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+        EA K+ D+M    ++PD  TY  L++GFC    L+ A  + + M+ 
Sbjct: 264 FVKEGKF------VEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS 317

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    D   +  LI GFC+  +V +   + REM   GL  D  TYT +I     +GD   
Sbjct: 318 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 377

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ K+M SDG  P + TY+ L++GLC +G+L+ A  + D M    +  D   Y  ++E
Sbjct: 378 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 437

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G CK G  +D   L    S KG+  +   Y +++S
Sbjct: 438 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS 472



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 200/437 (45%), Gaps = 24/437 (5%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS------------------KKGMGSSAS 44
           +R     ++T++H L  H   S+A  L+  +V                   K+G    A 
Sbjct: 110 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 169

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
              + +E        ++ + ++        +DDA+  F+ +     R        LI  +
Sbjct: 170 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 229

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
                 +       ++++   +P++  FN L+    KEGK  +A+ + D+  KR +    
Sbjct: 230 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 289

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            ++N+LING C    LD+  ++   M      PD+ TY+ LI G CK  R++D   L  E
Sbjct: 290 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 349

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  RGL  + V +TTLI G   +G      D   A+K+  +M ++G+ PD +TY+ILLDG
Sbjct: 350 MSHRGLVGDTVTYTTLIQGLFHDG------DCDNAQKVFKQMVSDGVPPDIMTYSILLDG 403

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            C  G LE AL++   M K  I+LD   +T +I G C+ GKV +   +   +   G+KP+
Sbjct: 404 LCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 463

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  +I   C     +  + LLK+M+ DG LP   TYN L+    + G    +  L+ 
Sbjct: 464 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIR 523

Query: 405 TMLDLGVVPDDITYNIL 421
            M     V D  T  ++
Sbjct: 524 EMRSCRFVGDASTIGLV 540



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 142/281 (50%), Gaps = 11/281 (3%)

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD--DAELLLHEMCERGLTPNDVIF 237
           LD+   L   M  S   P ++ ++ L++ + K  + D   +  LL +M + G  P+ V  
Sbjct: 23  LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTL 82

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           ++L++G+C   RI       +A  +VD+M   G  PD IT+T L+ G         A+ +
Sbjct: 83  SSLLNGYCHGKRI------SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 136

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              M++RG + + V +  +++G C+ G +  A  +L +M    ++ D   +  +ID  CK
Sbjct: 137 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 196

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                    L KEM + G  P V TY++L++ LC +G+  +A+ LL  M++  + P+ +T
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           +N L++   K G   + +KL  +   + +  D   Y SL++
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLIN 297


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 229/481 (47%), Gaps = 35/481 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV- 61
           F  T+  ++T++H L      S+A DL H +     +  +  +     E R      L+ 
Sbjct: 147 FHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLD 206

Query: 62  ------LDALMIVY---VD-LGFLDDAIQCFRLLRKH---YFRIPARGC-RCLIDRMMRT 107
                 L    I Y   VD +  + D +    LLRK       IP       +ID + + 
Sbjct: 207 RMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKD 266

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
              +     ++E+ +    P +  +N +++  C  G+  DA+ +  E  +R ++   V+F
Sbjct: 267 GRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTF 326

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + LIN   K     E   L   M    + P   TYS++I+G CK+NRLD AE + +    
Sbjct: 327 SALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPT 386

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           +G +P+ + F TLI G+C+  R+D      +  K++ EM   GL  + ITYT L+ GFC+
Sbjct: 387 KGCSPDIITFNTLIAGYCRAKRVD------DGIKLLHEMTEAGLVANTITYTTLIHGFCQ 440

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-------- 339
            GDL +A D+ +EMI  G+  + V    L+ G C  GK+ +A  M + M K         
Sbjct: 441 VGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASR 500

Query: 340 ---GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G++PD  TY ++I      G       L +EM   G +P   TY+++++GLCK  +L
Sbjct: 501 PFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 560

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSL 453
             A  + D+M      PD +T+N L+ G+CK G  +D  +L     ++G+V+D   Y +L
Sbjct: 561 DEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITL 620

Query: 454 V 454
           +
Sbjct: 621 I 621



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 17/323 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+   +P V  F+ L++   KEGK  +A+ ++DE   R +  + V+++++I+G CK  
Sbjct: 313 EMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQN 372

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD    +  +    G  PD+ T++ LI G C+  R+DD   LLHEM E GL  N + +T
Sbjct: 373 RLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYT 432

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C+       GD+  A+ ++ EM ++G+ P+ +T   LLDG C  G L+ AL++ 
Sbjct: 433 TLIHGFCQ------VGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 486

Query: 299 KEMIK-----------RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           K M K            G+E D   +  LI G    GK +EAE +  EM   G+ PD  T
Sbjct: 487 KAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y+ +ID  CK        ++   M S    P V T+N L+ G CK G + +   L   M 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMG 606

Query: 408 DLGVVPDDITYNILLEGHCKHGN 430
             G+V D ITY  L+ G  K  N
Sbjct: 607 QRGIVADAITYITLIYGFRKVDN 629



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 199/384 (51%), Gaps = 14/384 (3%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LDDAI  F  ++R          C+ L+  ++R   P V +  + ++       + Y F 
Sbjct: 62  LDDAIDLFGYMVRSRPLPSVIDFCK-LMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFT 120

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +LM   C   K+  A   F +  K G H T V+FNTL++G C    + E   L   M   
Sbjct: 121 ILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM--- 177

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
             +P+V T++ L+NGLC+E R+ +A  LL  M E GL PN + + T++DG CK G  D  
Sbjct: 178 -CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMG--DTV 234

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
             +   RK+ +    + + P+ + Y  ++DG  K+G    A ++  EM ++ I  D V +
Sbjct: 235 SALNLLRKMEE---VSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTY 291

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             +I+GFC  G+  +AE++L+EML+  + PD  T++ +I+ F K G       L  EM  
Sbjct: 292 NCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLP 351

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
              +P+  TY+++++G CK  +L  A  +       G  PD IT+N L+ G+C+    +D
Sbjct: 352 RSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDD 411

Query: 434 FDKL---QSEKGLVSDYACYTSLV 454
             KL    +E GLV++   YT+L+
Sbjct: 412 GIKLLHEMTEAGLVANTITYTTLI 435



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 161/314 (51%), Gaps = 5/314 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+L     PS   ++ ++   CK+ ++  A+ +F     +G     ++FNTLI G+C
Sbjct: 345 LYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYC 404

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +AK +D+G +L   M  +G+  +  TY+ LI+G C+   L+ A+ LL EM   G+ PN V
Sbjct: 405 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVV 464

Query: 236 IFTTLIDGHCKNGR----IDMAGDMKEARKIVD-EMCTNGLNPDKITYTILLDGFCKEGD 290
              TL+DG C NG+    ++M   M++++  +D     NG+ PD  TY IL+ G   EG 
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGK 524

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
              A ++ +EM  RGI  D + ++++I G C+  ++ EA +M   M      PD  T+  
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 584

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I  +CK G    G  L  EM   G +    TY  L+ G  K   +  A  +   M+  G
Sbjct: 585 LITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSG 644

Query: 411 VVPDDITYNILLEG 424
           V PD IT   +L G
Sbjct: 645 VYPDTITIRNMLTG 658



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 145/295 (49%), Gaps = 16/295 (5%)

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L +G  + K LD+   L   M  S   P V  +  L+  + +  R  D  + LH+  E  
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGR-PDVVISLHKKMEML 110

Query: 230 LTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
             P N   FT L+   C   ++        A     ++   G +P  +T+  LL G C E
Sbjct: 111 RMPCNAYSFTILMKCFCSCSKLPF------ALSTFGKITKLGFHPTVVTFNTLLHGLCVE 164

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             +  ALD+  +M K  +    V FT L++G CR G+VVEA  +L  ML+ GL+P+  TY
Sbjct: 165 DRISEALDLFHQMCKPNV----VTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITY 220

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGH-LPAVETYNALMNGLCKHGQLKNANMLLDTML 407
             ++D  CK GDT +   LL++M    H +P V  YN +++GL K G+  +A+ L   M 
Sbjct: 221 GTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQ 280

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           +  + PD +TYN ++ G C  G   D ++L     E+ +  D   +++L++   K
Sbjct: 281 EKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVK 335



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 28/261 (10%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++H        + A+DLL  ++S        S     + T  T L GL        
Sbjct: 430 TYTTLIHGFCQVGDLNAAQDLLQEMIS--------SGVCPNVVTCNTLLDGLC------- 474

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRI----PARGCR-------CLIDRMMRTNLPTVTLGFY 117
             D G L DA++ F+ ++K    I    P  G          LI  ++           Y
Sbjct: 475 --DNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELY 532

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+   G  P    ++ ++  LCK+ ++ +A  +FD  G +      V+FNTLI G+CKA
Sbjct: 533 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKA 592

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +D+G  L   M   G+  D  TY  LI G  K + +D A  +  EM   G+ P+ +  
Sbjct: 593 GMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITI 652

Query: 238 TTLIDGHCKNGRIDMAGDMKE 258
             ++ G      ++ A  M E
Sbjct: 653 RNMLTGLWSKEELERAVAMLE 673


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 176/309 (56%), Gaps = 6/309 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +N+L++  CK G +K+A  V +   +  L     ++N LING C    ++E 
Sbjct: 273 GLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+L+  ME   + PDV +Y+ LING  + +++ +A  LL EM E+G+ PN V    ++  
Sbjct: 333 FKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKW 392

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G++D      +A   + +M  +G +PD +TY  L++G+CK G++  A     EM +
Sbjct: 393 YCKEGKMD------DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR 446

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +++D+V    ++   CR  K+ EA ++L    K G   D+ +Y  +I  + K+G+   
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDR 506

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L  EM+    +P+  TYN ++ GLC+ G+ + A   L+ +L+ G++PD+ TYN +L 
Sbjct: 507 ALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILH 566

Query: 424 GHCKHGNPE 432
           G+C+ G+ E
Sbjct: 567 GYCREGDVE 575



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 44/367 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V+ +N+L++ LC EG+I++A  + DE     L    VS+NTLING  +   + E F+L
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G++P+  T++ ++   CKE ++DDA   + +M E G +P+ V + TLI+G+CK
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 AG+M EA + +DEM    +  D +T   +L   C+E  LE A  +     KRG 
Sbjct: 431 ------AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 307 ELDNVAFTALISGF-----------------------------------CRGGKVVEAER 331
            +D V++  LI G+                                   C+ GK  +A  
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAIS 544

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            L E+L+ GL PD+ TY  ++  +C+ GD +  F+   +M  +   P V T N L+ GLC
Sbjct: 545 KLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYA 448
             G L+ A  L +T +  G   D +TYN L+   CK G  +D   L S   EK L  D+ 
Sbjct: 605 MEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 449 CYTSLVS 455
            Y ++++
Sbjct: 665 TYNAIIT 671



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 199/439 (45%), Gaps = 46/439 (10%)

Query: 19  AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           +H+  S A+ LL   ++         L  SIL  R T     +LD  +  YV  G    A
Sbjct: 100 SHRKFSDAKSLLLGFIA---TDRRHDLHLSIL--RLTSPSKALLDTAIGAYVQSGQPHHA 154

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
            Q F+ +++   R     C  L++ ++R                Y  S SV         
Sbjct: 155 FQIFKKMKRLRLRPNLLTCNTLLNSLVR----------------YPSSHSVSF------- 191

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
                    ++  F++  K G+     +FN +I G+C      +     +VM      PD
Sbjct: 192 ---------SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPD 242

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             TY+ +++ LCK+ RL DA  LL +M  RGL PN   +  L+ G+CK       G +KE
Sbjct: 243 NVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCK------MGWLKE 296

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A  +++ M  N L PD  TY +L++G C EG +E A  +R EM    +  D V++  LI+
Sbjct: 297 AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLIN 356

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G     K+ EA ++L EM + G+KP+  T+ +++  +CK G        + +M   G  P
Sbjct: 357 GCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSP 416

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              TYN L+NG CK G +  A   +D M    +  D +T N +L   C+    E+  KL 
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476

Query: 439 S---EKGLVSDYACYTSLV 454
           S   ++G   D   Y +L+
Sbjct: 477 SSARKRGYFIDEVSYGTLI 495



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 157/327 (48%), Gaps = 29/327 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P+    N+++   CKEGK+ DA     +  + G     V++NTLING+CKA 
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E FR    M    M+ D  T + ++  LC+E +L++A  LL    +RG   ++V + 
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           TLI G+ K+G +D A                             G  ++A   ++E+  +
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES 552

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD+ TY  +L G+C+EGD+E A     +M++   + D      L+ G C  G + +A
Sbjct: 553 GLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKA 612

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++    +  G   D  TY  +I   CK G     F LL EM      P   TYNA++  
Sbjct: 613 LKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDI 416
           L   G+++ A   +  ML+ G +PD +
Sbjct: 673 LTDSGRIREAEEFMSKMLEKGNLPDQV 699



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 136/325 (41%), Gaps = 30/325 (9%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           +L  +  +K +  +  L +S    RG  +  +    L++ Y   G +D A++ +  +++ 
Sbjct: 459 ILRTLCREKKLEEAYKLLSSA-RKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEK 517

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                     C+I  + +       +    E+L+ G  P    +N ++H  C+EG ++ A
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKA 577

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
               ++  +        + N L+ G C    L++  +L +     G   D  TY+ LI  
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITS 637

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LCKE RLDDA  LL EM E+ L P+   +  +I     +GRI      +EA + + +M  
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRI------REAEEFMSKMLE 691

Query: 269 NGLNPDK-----------------------ITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            G  PD+                       + Y+  +   C EG  + A+ I  E  ++G
Sbjct: 692 KGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKG 751

Query: 306 IELDNVAFTALISGFCRGGKVVEAE 330
           I +D   +  L+ G  +  K +  E
Sbjct: 752 ITVDKSTYINLMDGLIKRRKSISKE 776


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 225/454 (49%), Gaps = 31/454 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPGLVLDA 64
           L+ YS  +++       S A  +L  ++ K G G S     S+L     G  +   V  A
Sbjct: 110 LYTYSIFINYFCRRSQLSLALAILGKMM-KLGYGPSIVTLNSLLNGFCHGNRISEAV--A 166

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+   V++G+  D +    L+   +    A     L++RM+                  G
Sbjct: 167 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK----------------G 210

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P +  +  +++ LCK G+   A  + ++  K  + A  V +NT+I+G CK K++D+ F
Sbjct: 211 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAF 270

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L + ME  G++PDV+TY+ LI+ LC   R  DA  LL +M E+ + P+ V F  LID  
Sbjct: 271 DLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAF 330

Query: 245 CKNGRIDMAGDMKEARKIVDEMC-TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            K G+      + EA K+ DEM  +    PD + Y  L+ GFCK   +E  +++ +EM +
Sbjct: 331 VKEGK------LVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+  + V +T LI GF +      A+ + ++M+  G+ PD  TY +++D  C NG+ +T
Sbjct: 385 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVET 444

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + + M+       + TY  ++  LCK G++++   L  ++   GV P+ +TY  ++ 
Sbjct: 445 ALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 504

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           G C+ G  E+ D L     E G + +   Y +L+
Sbjct: 505 GFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLI 538



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 201/417 (48%), Gaps = 41/417 (9%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCL--IDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           LDDAI  F  +++   F       + L  I +M + +L  ++LG  ++ L  G S ++Y 
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDL-VISLGEQMQNL--GISHNLYT 112

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +++ ++  C+  ++  A  +  +  K G   + V+ N+L+NG C    + E   L   M 
Sbjct: 113 YSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +PD  T++ L++GL + N+  +A  L+  M  +G  P+ V +  +I+G CK G  D
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232

Query: 252 MA-------------GDMKEARKIVDEMC----------------TNGLNPDKITYTILL 282
           +A              D+     I+D +C                T G+ PD  TY  L+
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI 292

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG-L 341
              C  G    A  +  +M+++ I  D V F ALI  F + GK+VEAE++  EM+K    
Sbjct: 293 SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHC 352

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD   Y  +I  FCK    + G  + +EM   G +    TY  L++G  +     NA M
Sbjct: 353 FPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 412

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           +   M+  GV PD +TYNILL+G C +GN E     F+ +Q ++ +  D   YT+++
Sbjct: 413 VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQ-KRDMKLDIVTYTTMI 468



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 165/332 (49%), Gaps = 10/332 (3%)

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L  K+ ++ K+ DA  +F +  K     + V F+ L++   K    D    L   M+  G
Sbjct: 46  LSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG 105

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +  ++YTYS  IN  C+ ++L  A  +L +M + G  P+ V   +L++G C   RI    
Sbjct: 106 ISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRI---- 161

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA  +VD+M   G  PD +T+T L+ G  +      A+ + + M+ +G + D V + 
Sbjct: 162 --SEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 219

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           A+I+G C+ G+   A  +L +M K  ++ D   Y  +ID  CK       F L  +M + 
Sbjct: 220 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETK 279

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P V TYN L++ LC +G+  +A+ LL  ML+  + PD + +N L++   K G   + 
Sbjct: 280 GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEA 339

Query: 435 DKLQSE----KGLVSDYACYTSLVSKSSKYRQ 462
           +KL  E    K    D   Y +L+    KY++
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKR 371


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 181/321 (56%), Gaps = 8/321 (2%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +T GF +  +IL  GY P    F  L+  LC +G++  A    D+   +G+    VS+ T
Sbjct: 110 ITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGT 169

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     +L   ++G   +P+V  Y+ +I+ LCK   + +A  L  EM  +G
Sbjct: 170 LINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG 229

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++ + V +TTLI G C      +A  +KEA  +++EM    +NP+  TY IL+D  CKEG
Sbjct: 230 ISADVVTYTTLIYGFC------IASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A ++   M+K  ++ D + ++ L+ G+    ++ +A+ +   M  +G+ PD  +YT
Sbjct: 284 KVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYT 343

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I+ FCKN        L KEM     +P + TY++L++GLCK G++     L+D M D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 410 GVVPDDITYNILLEGHCKHGN 430
           G+  + ITYN L++G CK+G+
Sbjct: 404 GIPANVITYNSLIDGLCKNGH 424



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 173/307 (56%), Gaps = 6/307 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V ++N ++  LCK   + +A  +F E   +G+ A  V++ TLI G C A  L E   L
Sbjct: 197 PNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGL 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    + P+VYTY+ L++ LCKE ++ +A+ +L  M +  + P+ + ++TL+DG+  
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYF- 315

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                +  ++K+A+ + + M   G+ PD  +YTIL++GFCK   ++ AL++ KEM ++ +
Sbjct: 316 -----LVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               V +++LI G C+ G++     ++ EM   G+  +  TY  +ID  CKNG       
Sbjct: 371 VPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIA 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  +M+  G  P   T+  L++GLCK G+LK+A      +L  G   D   YN+++ GHC
Sbjct: 431 LFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHC 490

Query: 427 KHGNPED 433
           K G  E+
Sbjct: 491 KQGLLEE 497



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 168/300 (56%), Gaps = 6/300 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   E++    +P+VY +N+L+  LCKEGK+K+A+ V     K  +    ++++TL++
Sbjct: 253 AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMD 312

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+     L +   + + M   G+ PDV++Y+ LING CK   +D+A  L  EM ++ + P
Sbjct: 313 GYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
             V +++LIDG CK+GRI    D+      +DEM   G+  + ITY  L+DG CK G L+
Sbjct: 373 GIVTYSSLIDGLCKSGRISYVWDL------IDEMRDRGIPANVITYNSLIDGLCKNGHLD 426

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ +  +M  +GI   +  FT L+ G C+GG++ +A+   +++L  G   D   Y ++I
Sbjct: 427 RAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMI 486

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  CK G  +    +L +M  +G +P   T++ ++N L K  +   A  LL  M+  G++
Sbjct: 487 NGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 174/338 (51%), Gaps = 6/338 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +  L +   G + E+   G S  V  +  L++  C   K+K+A  + +E   + 
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKT 264

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++    ++N L++  CK   + E   + +VM  + ++PDV TYS L++G      L  A+
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQ 324

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M   G+TP+   +T LI+G CKN  +D      EA  +  EM    + P  +TY+
Sbjct: 325 HVFNAMSLMGVTPDVHSYTILINGFCKNKMVD------EALNLFKEMHQKNMVPGIVTYS 378

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG CK G +    D+  EM  RGI  + + + +LI G C+ G +  A  +  +M   
Sbjct: 379 SLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQ 438

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P   T+T+++D  CK G  K      +++ + G+   V  YN ++NG CK G L+ A
Sbjct: 439 GIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEA 498

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             +L  M + G VP+ +T++I++    K    +  +KL
Sbjct: 499 LTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKL 536



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 153/328 (46%), Gaps = 44/328 (13%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           + FN +++   K K+      L   +E  G++PD+ T + LIN  C   ++     +L +
Sbjct: 60  IQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAK 119

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           + +RG  P+ + FTTLI G C  G+++      +A    D++   G+  D+++Y  L++G
Sbjct: 120 ILKRGYQPHTITFTTLIKGLCLKGQVN------KALHFHDKLLAQGIKFDQVSYGTLING 173

Query: 285 FCKEGDLESALD-IRK----------------------------------EMIKRGIELD 309
            CK GD   A+  +RK                                  EM  +GI  D
Sbjct: 174 VCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISAD 233

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +T LI GFC   K+ EA  +L EM+   + P+  TY +++D  CK G  K    +L 
Sbjct: 234 VVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLA 293

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M      P V TY+ LM+G     +LK A  + + M  +GV PD  +Y IL+ G CK+ 
Sbjct: 294 VMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNK 353

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLV 454
             ++   L  E   K +V     Y+SL+
Sbjct: 354 MVDEALNLFKEMHQKNMVPGIVTYSSLI 381



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 6/256 (2%)

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +N+D+     + M      P +  ++ +++   K      A  L H +  +G+ P+ +  
Sbjct: 38  QNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITL 97

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             LI+  C  G+I           ++ ++   G  P  IT+T L+ G C +G +  AL  
Sbjct: 98  NILINCFCHMGQITFGFS------VLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHF 151

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +++ +GI+ D V++  LI+G C+ G    A +++R++     KP+   Y  +ID  CK
Sbjct: 152 HDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCK 211

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                  + L  EM + G    V TY  L+ G C   +LK A  LL+ M+   + P+  T
Sbjct: 212 YQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYT 271

Query: 418 YNILLEGHCKHGNPED 433
           YNIL++  CK G  ++
Sbjct: 272 YNILVDALCKEGKVKE 287



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 71/131 (54%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D G  P  + F +L+  LCK G++KDAQ  F +   +G
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKG 474

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            H     +N +INGHCK   L+E   + S ME +G  P+  T+  +IN L K++  D AE
Sbjct: 475 YHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAE 534

Query: 220 LLLHEMCERGL 230
            LL +M  RGL
Sbjct: 535 KLLRQMICRGL 545



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V +A      ML +   P    +  ++D F K     T   L   +   G  P + T N 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           L+N  C  GQ+     +L  +L  G  P  IT+  L++G C  G         DKL ++ 
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQ- 158

Query: 442 GLVSDYACYTSLVSKSSKYRQKR 464
           G+  D   Y +L++   K    R
Sbjct: 159 GIKFDQVSYGTLINGVCKIGDTR 181


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 186/395 (47%), Gaps = 67/395 (16%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +++ +N L+  LCKEGK+ +A  ++ +   +GL  T VS+N++I GHC+  NLD    + 
Sbjct: 452 NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVF 511

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S M   G++P+V TYS L++G  K    + A  +   M +  + P+D  +   I+G CK 
Sbjct: 512 SDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKV 571

Query: 248 GRIDMAGDM-----------------------------KEARKIVDEMCTNGLNPDKITY 278
           GR   A DM                               A     EMC +G++P+ ITY
Sbjct: 572 GRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITY 631

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T L++GFCK  + + AL +R EM  +G+ELD  A+ ALI GFC+   +  A  +  E+L 
Sbjct: 632 TTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLD 691

Query: 339 VGLKPDDA-----------------------------------TYTMVIDCFCKNGDTKT 363
            GL P+                                     TYT +ID   K G    
Sbjct: 692 GGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVL 751

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM + G +P +  Y  L+NGLC  GQL+NA  +L  M    + P+   YN L+ 
Sbjct: 752 ALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIA 811

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           GH K GN ++  +L +E   KGL  +   Y  L++
Sbjct: 812 GHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILIN 846



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 203/402 (50%), Gaps = 7/402 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL  +  +  M  + +L+  +L+ +G     +  +++++ +   G LD A   F  +   
Sbjct: 459 LLSWLCKEGKMSEATTLWQKMLD-KGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDC 517

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
             +        L+D   +          +  ++D    PS + +N+ ++ LCK G+  +A
Sbjct: 518 GLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEA 577

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           Q +  +F ++G     +++N++++G  K  ++         M  SG+ P+V TY+ LING
Sbjct: 578 QDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLING 637

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            CK N  D A  + +EM  +GL  +   +  LIDG CK        D++ A  +  E+  
Sbjct: 638 FCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQ------DIETASWLFSELLD 691

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL+P+ + Y  L+ G+    ++E+AL+++K M+  GI  D   +T LI G  + G++V 
Sbjct: 692 GGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVL 751

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +  EM   G+ PD   YT++I+  C  G  +   ++L EM  D   P V  YNAL+ 
Sbjct: 752 ALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIA 811

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           G  K G L+ A  L + MLD G+ P+D TY+IL+ G  K GN
Sbjct: 812 GHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGN 853



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 184/388 (47%), Gaps = 37/388 (9%)

Query: 104 MMRTNL----PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           MMR NL          F+LE    G       +++++   CK   ++ A  +  +   +G
Sbjct: 250 MMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKG 309

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              +  +F ++I    K  N+ E  RLK  M   G++ +V   + L+ G CK+++L  A 
Sbjct: 310 WVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSAL 369

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM----------------------- 256
               +M E G +PN V +  LI+  CKNG +  A D+                       
Sbjct: 370 EFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGF 429

Query: 257 ------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
                 +EA K+ DE     +  +  TY  LL   CKEG +  A  + ++M+ +G+    
Sbjct: 430 LKVESREEASKLFDEAVACDI-ANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTK 488

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V++ ++I G CR G +  A  +  +ML  GLKP+  TY++++D + KNGDT+  F +   
Sbjct: 489 VSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDR 548

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M  +  +P+  TYN  +NGLCK G+   A  +L   ++ G VP  +TYN +++G  K G+
Sbjct: 549 MVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGS 608

Query: 431 PED---FDKLQSEKGLVSDYACYTSLVS 455
                   +   E G+  +   YT+L++
Sbjct: 609 VSSALTAYREMCESGVSPNVITYTTLIN 636



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 140/290 (48%), Gaps = 46/290 (15%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           + ++ G+ P    +N +M    KEG +  A   + E  + G+    +++ TLING CK  
Sbjct: 583 KFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNN 642

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF- 237
           N D   ++++ M   G+  D+  Y ALI+G CK+  ++ A  L  E+ + GL+PN VI+ 
Sbjct: 643 NTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYN 702

Query: 238 ----------------------------------TTLIDGHCKNGRIDMAGDMKEARKIV 263
                                             TTLIDG  K GR+ +A D+       
Sbjct: 703 SLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDL------Y 756

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM   G+ PD I YT+L++G C +G LE+A  I  EM +  I  +   + ALI+G  + 
Sbjct: 757 SEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKA 816

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           G + EA R+  EML  GL P+D TY ++I     NG  K G   LK + S
Sbjct: 817 GNLQEAFRLHNEMLDKGLTPNDTTYDILI-----NGKIKGGNSALKSLLS 861



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 186/421 (44%), Gaps = 66/421 (15%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L++  ++ N     +G +  +++    P +   N L+  L K   I +A+ V+++   +G
Sbjct: 180 LLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKG 239

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +H    + + ++  + K  N +E  +     +  G++ D   YS +I   CK   ++ A 
Sbjct: 240 VHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELAC 299

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE--------------------- 258
            LL +M ++G  P++  FT++I    K G +  A  +K+                     
Sbjct: 300 GLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGY 359

Query: 259 --------ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI---- 306
                   A +  D+M  NG +P+++TY +L++  CK G++  A D+  +M  + I    
Sbjct: 360 CKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTV 419

Query: 307 -----------------------------ELDNV-AFTALISGFCRGGKVVEAERMLREM 336
                                        ++ N+  + +L+S  C+ GK+ EA  + ++M
Sbjct: 420 FIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKM 479

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L  GL P   +Y  +I   C+ G+      +  +M   G  P V TY+ LM+G  K+G  
Sbjct: 480 LDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDT 539

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSL 453
           + A  + D M+D  +VP D TYNI + G CK G     +D  K   EKG V     Y S+
Sbjct: 540 EYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSI 599

Query: 454 V 454
           +
Sbjct: 600 M 600



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 156/343 (45%), Gaps = 42/343 (12%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           + +   + ++N L++   K  K+ DA   F+   +  +       N L+    K   + E
Sbjct: 168 FDFDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYE 227

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              +   M   G+  D +T   ++    K+N  ++A+    E   RG+  +   ++ +I 
Sbjct: 228 AREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQ 287

Query: 243 GHCKNGRIDMA-GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
             CKN  +++A G +K+ R         G  P + T+T ++    K+G++  AL ++ EM
Sbjct: 288 AFCKNLDVELACGLLKDMRD-------KGWVPSEGTFTSVIGACVKQGNMVEALRLKDEM 340

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G++++ V  T L+ G+C+  K+V A     +M + G  P+  TY ++I+  CKNG+ 
Sbjct: 341 VSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNM 400

Query: 362 KTGFRLLKEMRSDGHLPAV----------------------------------ETYNALM 387
              + L  +M++    P V                                   TYN+L+
Sbjct: 401 AKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLL 460

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           + LCK G++  A  L   MLD G+ P  ++YN ++ GHC+ GN
Sbjct: 461 SWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGN 503


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G S +V  ++ L+H LC+ G+ K+A  V +   + G+H   V++  LI+G CK  
Sbjct: 274 EMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDG 333

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                  L ++M   G  P   TY+ L++GLCKE  + DA  +L  M E+G   + V + 
Sbjct: 334 RATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYN 393

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLNPDKITYTILLDGFCKEGDLESALD 296
           TL+ G C  G++D      EA K+ + M    N L P+  T+ +L+ G CKEG L  A+ 
Sbjct: 394 TLMKGLCDKGKVD------EALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVK 447

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I ++M+K+G   + V +  L+ G  + GK+ EA  + +++L +G  P+  TY+++ID FC
Sbjct: 448 IHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 507

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K         L  EMR+ G  PA+  YN LM  LCK G L+ A  L   M +    PD I
Sbjct: 508 KMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDII 567

Query: 417 TYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVSKSSK 459
           ++N +++G  K G+ +   +LQ    E GL  D   +++L+++ SK
Sbjct: 568 SFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSK 613



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 171/341 (50%), Gaps = 6/341 (1%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  L+D + R+    +    Y  +      PS    + L+       K +    V     
Sbjct: 77  CNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVL 136

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           KRG        N ++ G C+   + E   L   M    + PD+ +Y+ LINGLCK  +L 
Sbjct: 137 KRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLK 196

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A  LL EM   G  PN V  TTL+DG CK+GR+D      EA ++++ M   G + D +
Sbjct: 197 EAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMD------EAMELLEAMKKKGFDADVV 250

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  L+ GFC  G+L+   ++  EM+ +GI  + V ++ L+ G CR G+  EA  +L  M
Sbjct: 251 LYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM 310

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G+ PD  TYT +ID  CK+G       LL  M   G  P+  TYN L++GLCK G +
Sbjct: 311 AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLV 370

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            +A  +L  M++ G   D +TYN L++G C  G  ++  KL
Sbjct: 371 IDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 411



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 175/347 (50%), Gaps = 9/347 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T  +  +   LD+   PS    N L+  L +      A  V+       +  +  S + L
Sbjct: 56  TEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSAL 115

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I     A+    GF +  ++   G   +V+  + ++ GLC+   + +A  L+ EM  + +
Sbjct: 116 IECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSV 175

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
           +P+ V + TLI+G CK      A  +KEA  ++ EM   G  P+ +T T L+DG CK+G 
Sbjct: 176 SPDIVSYNTLINGLCK------AKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGR 229

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A+++ + M K+G + D V +  LISGFC  G +   + +  EML  G+  +  TY+ 
Sbjct: 230 MDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSC 289

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           ++   C+ G  K    +L  M   G  P V TY  L++GLCK G+  +A  LL+ M++ G
Sbjct: 290 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 349

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
             P ++TYN+LL G CK G   D  K   +  EKG  +D   Y +L+
Sbjct: 350 EEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLM 396



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 182/361 (50%), Gaps = 11/361 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +    T  +     +++ G  PS   +NVL+  LCKEG + DA  +     ++G
Sbjct: 325 LIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 384

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVM--EGSGMRPDVYTYSALINGLCKENRLDD 217
             A  V++NTL+ G C    +DE  +L + M    + + P+V+T++ LI GLCKE RL  
Sbjct: 385 KKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTK 444

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +  +M ++G   N V +  L+ G  K G+I      KEA ++  ++   G  P+  T
Sbjct: 445 AVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKI------KEAMELWKQVLDLGFVPNSFT 498

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y+IL+DGFCK   L  A  +  EM   G+      +  L++  C+ G + +A+ + +EM 
Sbjct: 499 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG 558

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
               +PD  ++  +ID   K GD +    L  +M   G  P   T++ L+N L K G+L 
Sbjct: 559 NANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELD 618

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            A   L+ M+  G  PD + Y+ LL+G    G+  +   L    + KG V D    ++++
Sbjct: 619 EAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTIL 678

Query: 455 S 455
           +
Sbjct: 679 T 679



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 148/303 (48%), Gaps = 7/303 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ FN+L+  LCKEG++  A  +  +  K+G     V++N L+ G  KA  + E   L
Sbjct: 424 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 483

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +   G  P+ +TYS LI+G CK   L+ A+ L  EM   GL P    + TL+   CK
Sbjct: 484 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 543

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G ++      +A+ +  EM      PD I++  ++DG  K GD +   +++ +M++ G+
Sbjct: 544 EGSLE------QAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGL 597

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D + F+ LI+   + G++ EA+  L  M+  G  PD   Y  ++      GDT     
Sbjct: 598 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 657

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN-ILLEGH 425
           LL +M + G +   +  + ++  LC   Q  +   LL T          I+ N +L++ H
Sbjct: 658 LLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELLMQLH 717

Query: 426 CKH 428
             H
Sbjct: 718 QSH 720


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 217/419 (51%), Gaps = 10/419 (2%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M  + S+FA IL+  G H   +  + L+      G L +A+     +    F +     R
Sbjct: 110 MTFAFSIFAKILKL-GYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYR 168

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            LI+ + +       L    +I     +  V ++N++++ LCK+  + DA  ++ E   +
Sbjct: 169 TLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITK 228

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +    V+FN+LI G C    L E F L   M    + PDVYT+S L++ LCK+  +  A
Sbjct: 229 RISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRA 288

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           + +L  M ++G+ P+ V +++L+DG+C      +  ++ +A+ +   M   G+ P   +Y
Sbjct: 289 KNMLAVMMKQGVIPDVVTYSSLMDGYC------LVNEVNKAKHVFSTMSRLGVAPHAHSY 342

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            I+++G  K   ++ AL + KEM  +GI  D V + +LI G C+ G++  A +++ EM  
Sbjct: 343 NIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHN 402

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G+  D  TY  +ID  CKN        L+K+++  G  P++ TYN L++GLCK G+LKN
Sbjct: 403 NGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKN 462

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           A  +   +L  G   +  TYNI++ G CK G   + + L S+    G++ D   Y +++
Sbjct: 463 AQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETII 521



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 177/333 (53%), Gaps = 12/333 (3%)

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
            C C +  M      T     + +IL  GY P+   FN L++ +C  GK+K+A    D  
Sbjct: 102 NCYCHLGEM------TFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHV 155

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G H   VS+ TLING CK        ++   +EG  +  DV  Y+ +IN LCK+  +
Sbjct: 156 IALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAV 215

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            DA  L  EM  + ++P+ V F +LI G C      + G +KEA  +  EM    +NPD 
Sbjct: 216 SDAYQLYSEMITKRISPDVVTFNSLILGFC------VVGQLKEAFGLFHEMVLKNINPDV 269

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            T++IL+D  CK+G++  A ++   M+K+G+  D V +++L+ G+C   +V +A+ +   
Sbjct: 270 YTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFST 329

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M ++G+ P   +Y ++I+   K         L KEM   G  P   TYN+L++GLCK G+
Sbjct: 330 MSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGR 389

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +  A  L+D M + G+  D +TYN L++  CK+
Sbjct: 390 ISYAWQLVDEMHNNGIPADILTYNSLIDVLCKN 422



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 166/300 (55%), Gaps = 6/300 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
             G + E++    +P VY F++L+  LCK+G I  A+ +     K+G+    V++++L++
Sbjct: 253 AFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMD 312

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C    +++   + S M   G+ P  ++Y+ +INGL K   +D+A  L  EMC +G+ P
Sbjct: 313 GYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAP 372

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + +LIDG CK GRI  A       ++VDEM  NG+  D +TY  L+D  CK   ++
Sbjct: 373 DTVTYNSLIDGLCKLGRISYAW------QLVDEMHNNGIPADILTYNSLIDVLCKNHHID 426

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ + K++  +GI+     +  LI G C+GG++  A+ + +++L  G   +  TY ++I
Sbjct: 427 KAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMI 486

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  CK G       LL +M ++G +P   TY  ++  L +  + + A  LL  M+  G++
Sbjct: 487 NGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 197 PDVYTYSALINGLCK--ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           P +  ++ ++  + K   N    A  L H++  +G+TP  V F  L++ +C        G
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCH------LG 108

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           +M  A  I  ++   G +P  IT+  L++G C  G L+ AL     +I  G  LD V++ 
Sbjct: 109 EMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYR 168

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI+G C+ G+   A +ML+++    +  D   Y ++I+  CK+      ++L  EM + 
Sbjct: 169 TLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITK 228

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---P 431
              P V T+N+L+ G C  GQLK A  L   M+   + PD  T++IL++  CK GN    
Sbjct: 229 RISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRA 288

Query: 432 EDFDKLQSEKGLVSDYACYTSLV 454
           ++   +  ++G++ D   Y+SL+
Sbjct: 289 KNMLAVMMKQGVIPDVVTYSSLM 311



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 136/273 (49%), Gaps = 6/273 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  + A    +++  +G     +   +LM  Y  +  ++ A   F  + +      A 
Sbjct: 281 KDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAH 340

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               +I+ + +  +    L  + E+   G +P    +N L+  LCK G+I  A  + DE 
Sbjct: 341 SYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEM 400

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G+ A  +++N+LI+  CK  ++D+   L   ++  G++P +YTY+ LI+GLCK  RL
Sbjct: 401 HNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRL 460

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +A+ +  ++  +G + N   +  +I+G CK G  +      EA  ++ +M  NG+ PD 
Sbjct: 461 KNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFN------EAEVLLSKMENNGIIPDA 514

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +TY  ++    ++ + E A  + +EMI RG+ L
Sbjct: 515 VTYETIIRALFRKDENEKAEKLLREMIIRGLLL 547


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 13/334 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  Y FN L+   C+  ++  A+ +FD+   RG     VS+  LI G C+   +DE 
Sbjct: 41  GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEA 100

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+    +PD++ Y+AL+ GLCK  R ++  L+L  M E G  P+   +  ++D 
Sbjct: 101 VELFGEMD----QPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDF 156

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C   +       KEA +++ EM   GL P  +T T +++ +CKEG +  AL + + M  
Sbjct: 157 RCWERK------AKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKL 210

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG + +   + AL+ GFC  GKV +A  +L +M   G+ PD  TY ++I   C +G  ++
Sbjct: 211 RGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIES 270

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            FRLL+ M  DG +    TYNAL+N LCK G+   A  L D++   G+ P+ +T+N L+ 
Sbjct: 271 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 330

Query: 424 GHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           G CK G  +    F +     G   D   Y+S +
Sbjct: 331 GLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFI 364



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 176/353 (49%), Gaps = 10/353 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L  A++   L+ +  +R  A     LI    RTN   V    + ++   G++  V  +  
Sbjct: 27  LASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAA 86

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   C+ G+I +A  +F E  +  +H  A     L+ G CKA   +EG  +   M+  G
Sbjct: 87  LIEGFCETGRIDEAVELFGEMDQPDMHMYA----ALVKGLCKAGRGEEGLLMLRRMKELG 142

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            RP    Y+A+++  C E +  +AE +L EM E+GL P  V  T +I+ +CK GR     
Sbjct: 143 WRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR----- 197

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            M +A ++++ M   G  P+  TY  L+ GFC EG +  A+ +  +M   G+  D V + 
Sbjct: 198 -MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYN 256

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI G C  G +  A R+LR M   GL  D  TY  +I+  CK+G T     L   + + 
Sbjct: 257 LLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETR 316

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           G  P   T+N+L+NGLCK G++  A   L+ M+  G  PD  TY+  +E  CK
Sbjct: 317 GIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 369



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 154/299 (51%), Gaps = 6/299 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V+ +N L+   C EGK+  A  + ++    G++  AV++N LI G C   +++  
Sbjct: 212 GCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESA 271

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +MEG G+  D YTY+ALIN LCK+ R D A  L   +  RG+ PN V F +LI+G
Sbjct: 272 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 331

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+G++D+A       K +++M + G  PD  TY+  ++  CK    +  L    EM++
Sbjct: 332 LCKSGKVDIAW------KFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ 385

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + ++   V +T +I    +        R   EM+  G  PD  TYT  +  +C  G    
Sbjct: 386 KDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNE 445

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +L EM  +G       YN LM+G    GQ  +A  +L  M  +  VP+  TY ILL
Sbjct: 446 AENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILL 504



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 155/297 (52%), Gaps = 13/297 (4%)

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N +I   C+  +L    R  S+M  SG RPD YT+++LI G C+ N++D A  L  +M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             RG   + V +  LI+G C+ GRID      EA ++  EM      PD   Y  L+ G 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRID------EAVELFGEM----DQPDMHMYAALVKGL 122

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK G  E  L + + M + G      A+ A++   C   K  EAE ML+EM + GL P  
Sbjct: 123 CKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCV 182

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            T T VI+ +CK G      R+L+ M+  G  P V TYNAL+ G C  G++  A  LL+ 
Sbjct: 183 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNK 242

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSK 459
           M   GV PD +TYN+L+ G C  G+ E      +L    GL++D   Y +L++   K
Sbjct: 243 MRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCK 299



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 166/346 (47%), Gaps = 41/346 (11%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G+ PS   +  ++   C E K K+A+ +  E  ++GL    V+   +IN +CK   + 
Sbjct: 140 ELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 199

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  R+  +M+  G +P+V+TY+AL+ G C E ++  A  LL++M   G+ P+ V +  LI
Sbjct: 200 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLI 259

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C +G I+       A +++  M  +GL  D+ TY  L++  CK+G  + A  +   +
Sbjct: 260 RGQCIDGHIE------SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 313

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RGI+ + V F +LI+G C+ GKV  A + L +M+  G  PD  TY+  I+  CK   +
Sbjct: 314 ETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 373

Query: 362 KTGF-----------------------RLLKE------------MRSDGHLPAVETYNAL 386
           + G                        +LLKE            M S G  P V TY   
Sbjct: 374 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 433

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           M   C  G+L  A  +L  M   GV  D + YN L++GH   G  +
Sbjct: 434 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTD 479



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 23/408 (5%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           SA     ++E  G        +AL+      G  D A   F  L     +  A     LI
Sbjct: 270 SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 329

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           + + ++    +   F  +++  G +P  Y ++  +  LCK    ++      E  ++ + 
Sbjct: 330 NGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 389

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            + V++  +I+   K +N     R    M  SG  PDV TY+  +   C E RL++AE +
Sbjct: 390 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 449

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L EM + G+T + + + TL+DGH   G+ D       A  I+ +M +    P++ TY IL
Sbjct: 450 LMEMSKNGVTVDTMAYNTLMDGHASIGQTD------HAVSILKQMTSVASVPNQFTYFIL 503

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNV-----------------AFTALISGFCRGG 324
           L    +   +E  L +    + + IEL +V                  +++++ GF   G
Sbjct: 504 LRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDG 563

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +  EA  ++  M +  +  ++  YT ++ CFCK+      + L+  M   G +P + +Y 
Sbjct: 564 RTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQ 623

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            L++GL   GQ   A  +          PD+I + ++++G  K G+ +
Sbjct: 624 HLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 671



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 122/291 (41%), Gaps = 23/291 (7%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E++  G +P V  +   M   C EG++ +A+ V  E  K G+    +++NTL++GH  
Sbjct: 415 WGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS 474

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALIN-----------------GLCKENRLDDAE 219
               D    +   M      P+ +TY  L+                  G+ K   L D  
Sbjct: 475 IGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVF 534

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M +    PN   ++++++G  ++GR +      EA  +V  M  + ++ ++  YT
Sbjct: 535 GLFDVMKKNEFLPNSGTYSSILEGFSEDGRTE------EATSLVSLMKEDSISLNEDIYT 588

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+  FCK      A  +   MI+ G     +++  L+SG    G+  +A+ +       
Sbjct: 589 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWK 648

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
              PD+  + ++ID   K G +     ++  +      P+ +TY  L   L
Sbjct: 649 DYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEEL 699


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + ++L  G SPSV  +++L+   CKE   + A  + DE   +G     V++N LIN 
Sbjct: 271 LAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA 330

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C   ++DE   + S +   G +PD  TY+ ++  LC   R  + E LL EM      P+
Sbjct: 331 MCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPD 390

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           +V F T++   C+ G +D       A ++VD M  +G   D +TY+ +LDG C  G ++ 
Sbjct: 391 EVTFNTIVTSLCQQGLVD------RAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDD 444

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+++   +   G + D +A+T ++ G C   +   AE ++ EML     PD+ T+  V+ 
Sbjct: 445 AVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVA 504

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C+ G      R++++M  +G  P + TYN +++GLC    + +A  LL  +   G  P
Sbjct: 505 SLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKP 564

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQS 439
           D +T+N LL+G C     ED ++L +
Sbjct: 565 DIVTFNTLLKGLCGVDRWEDAEQLMA 590



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 166/314 (52%), Gaps = 12/314 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   N+L+ +LC +G++ DA+ VF   G     AT V++NT++NG+C+A  +++  RL
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDAERVFAALGP---SATVVTYNTMVNGYCRAGRIEDARRL 241

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              + G    PD +T++ LI  LC   R+ DA  +  +M  RG +P+ V ++ L+D  CK
Sbjct: 242 ---INGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCK 298

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                     ++A  ++DEM   G  PD +TY +L++  C EGD++ AL+I   +   G 
Sbjct: 299 ES------GYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGC 352

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D V +T ++   C   +  E E +L EM      PD+ T+  ++   C+ G       
Sbjct: 353 KPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIE 412

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++  M   G +  + TY+++++GLC  G++ +A  LL  +   G  PD I Y  +L+G C
Sbjct: 413 VVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLC 472

Query: 427 KHGNPEDFDKLQSE 440
                E  ++L +E
Sbjct: 473 STEQWERAEELMAE 486



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 160/316 (50%), Gaps = 6/316 (1%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + P  + FN L+  LC  G+I DA  VFD+   RG   + V+++ L++  CK     +  
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAM 306

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M   G  PD+ TY+ LIN +C E  +D+A  +L  +   G  P+ V +T ++   
Sbjct: 307 ALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSL 366

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C + R       KE  +++ EM +N   PD++T+  ++   C++G ++ A+++   M + 
Sbjct: 367 CGSER------WKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEH 420

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   D V +++++ G C  G+V +A  +L  +   G KPD   YT V+   C     +  
Sbjct: 421 GCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERA 480

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L+ EM      P   T+N ++  LC+ G +  A  +++ M + G  PD +TYN +++G
Sbjct: 481 EELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDG 540

Query: 425 HCKHGNPEDFDKLQSE 440
            C     +D  +L S+
Sbjct: 541 LCNESCIDDAMELLSD 556



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 170/339 (50%), Gaps = 11/339 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+     +P    FN ++  LC++G +  A  V D   + G  A  V+++++++G C   
Sbjct: 381 EMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVG 440

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+   L S ++  G +PD   Y+ ++ GLC   + + AE L+ EM      P++V F 
Sbjct: 441 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFN 500

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T++   C+ G +D       A ++V++M  NG +PD +TY  ++DG C E  ++ A+++ 
Sbjct: 501 TVVASLCQKGLVD------RAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELL 554

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++   G + D V F  L+ G C   +  +AE+++  M++    PD+ T+  VI   C+ 
Sbjct: 555 SDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQK 614

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G        LK M  +G +P   TY+ +++ L K G+ + A  LL  M +    PD ITY
Sbjct: 615 GLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN--GTPDLITY 672

Query: 419 NILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           N ++    K G  E   D  ++    GL  D   Y SL 
Sbjct: 673 NTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLA 711



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 12/364 (3%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           +LD L     D+G +DDA++    L+ +  +        ++  +  T           E+
Sbjct: 432 ILDGL----CDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEM 487

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L     P    FN ++  LC++G +  A  V ++  + G     V++N +I+G C    +
Sbjct: 488 LCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCI 547

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+   L S ++  G +PD+ T++ L+ GLC  +R +DAE L+  M      P+++ F T+
Sbjct: 548 DDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTV 607

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I   C+ G +  A    E  KI+ E   NG  P+  TY+I++D   K G  ++AL++   
Sbjct: 608 ITSLCQKGLLTQA---IETLKIMAE---NGCVPNSSTYSIVVDALLKAGKAQAALELLSG 661

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M     +L  + +  +IS   + GK+ EA  +LR M+  GL PD  TY  +    C+   
Sbjct: 662 MTNGTPDL--ITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDG 719

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
           T    R+L+ ++  G  P    YN ++ G C+  +   A      M+  G +PD+ TY I
Sbjct: 720 TDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVI 779

Query: 421 LLEG 424
           LLE 
Sbjct: 780 LLEA 783



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 155/324 (47%), Gaps = 17/324 (5%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLH--ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +  L + G+I +A ++FD     G       V  N LI   C    + +  R+ + +   
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL--- 213

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G    V TY+ ++NG C+  R++DA  L++ M      P+   F  LI   C  GRI   
Sbjct: 214 GPSATVVTYNTMVNGYCRAGRIEDARRLINGM---PFPPDTFTFNPLIRALCVRGRI--- 267

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               +A  + D+M   G +P  +TY+ILLD  CKE     A+ +  EM  +G E D V +
Sbjct: 268 ---PDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTY 324

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI+  C  G V EA  +L  +   G KPD  TYT V+   C +   K    LL EM S
Sbjct: 325 NVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTS 384

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +   P   T+N ++  LC+ G +  A  ++D M + G V D +TY+ +L+G C  G  +D
Sbjct: 385 NNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDD 444

Query: 434 FDKLQS---EKGLVSDYACYTSLV 454
             +L S     G   D   YT+++
Sbjct: 445 AVELLSRLKSYGCKPDTIAYTTVL 468



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 46/111 (41%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P    +  L + +C+E     A  +       GL      +N ++ G C+ + 
Sbjct: 695 MVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRR 754

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
            D      + M  SG  PD  TY  L+  L     LD+A+ LL  +C  G+
Sbjct: 755 TDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 183/334 (54%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P+   F  L+  LC +G+I  A +  D     G     V + TLI+G CK       
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ++G+ ++P+V  YS +I+G+CK+  ++DA  L  EM  +G++PN V ++ LI G
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                     G +K+A  + ++M    + PD  T+ IL+DGFCK+G ++    +   M+K
Sbjct: 242 FFT------VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMK 295

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +GI+ + V + +L+ G+C   +V +A+ +L  M + G+ PD  +Y ++ID FCK      
Sbjct: 296 QGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDE 355

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L KEM     +P V TYN+L++GLCK G++  A  L+D M D GV PD ITY+ +L+
Sbjct: 356 AMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILD 415

Query: 424 GHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
             CK+   +    L +   ++G+  +   YT L+
Sbjct: 416 ALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILI 449



 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 172/323 (53%), Gaps = 15/323 (4%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            V +GF L+ + YG          L+H LCK G+ + A  +        +    V ++T+
Sbjct: 153 VVAMGFQLDQVGYG---------TLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTI 203

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+G CK K++++ F L S M   G+ P+V TYSALI+G     +L DA  L ++M    +
Sbjct: 204 IDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENI 263

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+   F  L+DG CK+G+      MKE + +   M   G+ P+ +TY  L+DG+C   +
Sbjct: 264 KPDVYTFNILVDGFCKDGK------MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKE 317

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A  I   M +RG+  D  ++  LI GFC+  KV EA  + +EM    + PD  TY  
Sbjct: 318 VNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNS 377

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +ID  CK G      +L+ EM   G  P + TY+++++ LCK+ Q+  A  LL  + D G
Sbjct: 378 LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG 437

Query: 411 VVPDDITYNILLEGHCKHGNPED 433
           + P+  TY IL++G CK G  ED
Sbjct: 438 IRPNMYTYTILIDGLCKGGRLED 460



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 174/304 (57%), Gaps = 6/304 (1%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+V +++ ++  +CK+  + DA  ++ E   +G+    V+++ LI+G      L +   
Sbjct: 194 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAID 253

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M    ++PDVYT++ L++G CK+ ++ + + +   M ++G+ PN V + +L+DG+C
Sbjct: 254 LFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 313

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
                 +  ++ +A+ I+  M   G+NPD  +Y IL+DGFCK   ++ A+++ KEM  + 
Sbjct: 314 ------LVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKH 367

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D V + +LI G C+ GK+  A +++ EM   G+ PD  TY+ ++D  CKN       
Sbjct: 368 IIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 427

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL +++  G  P + TY  L++GLCK G+L++A+ + + +L  G      TY +++ G 
Sbjct: 428 ALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGF 487

Query: 426 CKHG 429
           C  G
Sbjct: 488 CNKG 491



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 172/325 (52%), Gaps = 6/325 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID M +          Y E++  G SP+V  ++ L+      G++KDA  +F++     
Sbjct: 203 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILEN 262

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     +FN L++G CK   + EG  + ++M   G++P+V TY +L++G C    ++ A+
Sbjct: 263 IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAK 322

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L+ M +RG+ P+   +  LIDG CK  ++D      EA  +  EM    + PD +TY 
Sbjct: 323 SILYTMSQRGVNPDIQSYNILIDGFCKIKKVD------EAMNLFKEMHHKHIIPDVVTYN 376

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG CK G +  AL +  EM  RG+  D + +++++   C+  +V +A  +L ++   
Sbjct: 377 SLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQ 436

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P+  TYT++ID  CK G  +    + +++   G+   V TY  +++G C  G    A
Sbjct: 437 GIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEA 496

Query: 400 NMLLDTMLDLGVVPDDITYNILLEG 424
             LL  M D   +PD +TY I++  
Sbjct: 497 LALLSKMKDNSCIPDAVTYEIIIRS 521



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 162/329 (49%), Gaps = 25/329 (7%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY---- 200
           + DA  +F    ++     A+ FN ++    K+K+      L   ME  G+ P ++    
Sbjct: 57  VVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQH 116

Query: 201 ------------TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
                       T++ LI GLC + ++  A L    +   G   + V + TLI G CK  
Sbjct: 117 PHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCK-- 174

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                G+ + A  ++  +  N + P+ + Y+ ++DG CK+  +  A D+  EM+ +GI  
Sbjct: 175 ----VGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISP 230

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + V ++ALISGF   G++ +A  +  +M+   +KPD  T+ +++D FCK+G  K G  + 
Sbjct: 231 NVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVF 290

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G  P V TY +LM+G C   ++  A  +L TM   GV PD  +YNIL++G CK 
Sbjct: 291 AMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKI 350

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
              ++   L  E   K ++ D   Y SL+
Sbjct: 351 KKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 7/180 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N L+  LCK GKI  A  + DE   RG+    ++++++++  CK   +D+   L
Sbjct: 370 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIAL 429

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + ++  G+RP++YTY+ LI+GLCK  RL+DA  +  ++  +G       +T +I G C 
Sbjct: 430 LTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCN 489

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G  D      EA  ++ +M  N   PD +TY I++     + + + A  +R EMI RG+
Sbjct: 490 KGLFD------EALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKLR-EMITRGL 542



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 7/197 (3%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D+A+  F+ +   +          LID + +    +  L    E+ D G  P +  ++ 
Sbjct: 353 VDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSS 412

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++  LCK  ++  A  +  +   +G+     ++  LI+G CK   L++   +   +   G
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
               V TY+ +I+G C +   D+A  LL +M +    P+ V +  +I         D A 
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAE 532

Query: 255 DMKEARKIVDEMCTNGL 271
            ++       EM T GL
Sbjct: 533 KLR-------EMITRGL 542


>gi|255584218|ref|XP_002532847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527384|gb|EEF29525.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 224/465 (48%), Gaps = 57/465 (12%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLP-----GLVLDAL 65
           +VH+L+   + S+ + LL  I+S + + S     +S+LE  T    +P      L+ +++
Sbjct: 31  IVHYLLKFNLKSEVQSLLLQILSNR-ISSPFFTVSSLLENLTEPISIPCPKISSLLYESI 89

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-----------------N 108
           + VY+  G ++ A+  F  +              L+D ++++                  
Sbjct: 90  ISVYIQSGSIELAVLYFNQMVDKGLVFEPNIFNTLLDSLVKSKCFEKLWFVFNEVKGKIE 149

Query: 109 LPTVTLG-----------FY--LEIL----DYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           L   T G           FY   E+L      G SP+V ++  L+   CK G ++ A+++
Sbjct: 150 LDVYTYGIMIKGCCEAGVFYKGFELLTDLEKMGLSPNVVIYTTLIDGCCKNGDVRRAKLL 209

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           F++ G+  L A   ++  LING  K     +GF L   M+  G+ P++YTY+ +IN  C 
Sbjct: 210 FNKMGEVNLVANQYTYTVLINGFFKKGLRKDGFELFEKMQLDGVFPNLYTYNCMINEFCN 269

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------GDM 256
           E +L  A  L  EMC+RG+  N V + TLI G C+  RI  A               G+ 
Sbjct: 270 EGKLHKAYELFDEMCKRGVVSNVVTYNTLISGLCRKTRIWEAEKLVDQMKRAGYSNGGNW 329

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +   +V EM   G++P K+TYTIL +   + GD+E A      M K G+  D   +  L
Sbjct: 330 VDVTDLVREMEERGISPSKVTYTILTNAHVRLGDMEKAFHFYSSMEKVGLVPDVHIYGVL 389

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           + G C  G + EA ++ R M ++ L+P++  Y  +I+ +CK G++    R LKEM     
Sbjct: 390 LHGLCVKGNMKEASKLFRSMAEMKLEPNEVVYNTMINGYCKAGNSFRALRFLKEMEDKRL 449

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +P V +Y++ +  LCK G+ + A +LL+ M   G+ P    YNI+
Sbjct: 450 VPNVASYSSTIGILCKDGKWQEAEILLNKMRGSGLEPSVSIYNII 494



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 7/236 (2%)

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y ++I+   +   ++ A L  ++M ++GL     IF TL+D   K+          E   
Sbjct: 86  YESIISVYIQSGSIELAVLYFNQMVDKGLVFEPNIFNTLLDSLVKSKCF-------EKLW 138

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            V       +  D  TY I++ G C+ G      ++  ++ K G+  + V +T LI G C
Sbjct: 139 FVFNEVKGKIELDVYTYGIMIKGCCEAGVFYKGFELLTDLEKMGLSPNVVIYTTLIDGCC 198

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + G V  A+ +  +M +V L  +  TYT++I+ F K G  K GF L ++M+ DG  P + 
Sbjct: 199 KNGDVRRAKLLFNKMGEVNLVANQYTYTVLINGFFKKGLRKDGFELFEKMQLDGVFPNLY 258

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           TYN ++N  C  G+L  A  L D M   GVV + +TYN L+ G C+     + +KL
Sbjct: 259 TYNCMINEFCNEGKLHKAYELFDEMCKRGVVSNVVTYNTLISGLCRKTRIWEAEKL 314


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 198/391 (50%), Gaps = 48/391 (12%)

Query: 111 TVTLGFYLE------------ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           TV  GFY E            +L  G  P V  FN L+H LCK+G++++++ + ++  K+
Sbjct: 186 TVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKK 245

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+ +   +FN  I G C+   L     +   +   G+ PDV TY+ LI GLCK + + +A
Sbjct: 246 GMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEA 305

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR-------------KIVDE 265
           E  LH++   GL P+   + TLIDG+CK G +  A  + +                +++ 
Sbjct: 306 EKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLING 365

Query: 266 MCTN----------------GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +C N                GL P  I Y +L+ G C+EG +  AL +  EM + G   D
Sbjct: 366 LCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSD 425

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              +  +I+G C+ G V +A  ++ + +  G  PD  T+  +ID +CK    +T  ++L 
Sbjct: 426 IWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILN 485

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANML--LDTMLDLGVVPDDITYNILLEGHCK 427
           +M S G  P V TYN+++NGL K   +KN +++   +TM++ G VP+ ITYNIL E  CK
Sbjct: 486 KMWSHGVTPDVITYNSVLNGLSK--AVKNEDLMETFETMVEKGCVPNKITYNILTESLCK 543

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            G   +   L  E   KG+  D   + +++S
Sbjct: 544 AGKVNEALDLVDEILNKGITPDTVSFATIIS 574



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 196/404 (48%), Gaps = 11/404 (2%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           L  +A+M + V+ G+   A + F  ++              I    RT  P   L     
Sbjct: 112 LSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNN 171

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G   +   +  ++    +E    +A  +F++  + G+     +FN L++  CK   
Sbjct: 172 MVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGE 231

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E  RL + +   GM  +++T++  I GLC++  L  A  +L  +   GLTP+ V + T
Sbjct: 232 VQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNT 291

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G CKN  +       EA K + ++   GL PD  TY  L+DG+CK G L++A  I +
Sbjct: 292 LICGLCKNSNV------VEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQ 345

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
             I +G   D   + +LI+G C+  ++  A  +    L  GLKP    Y M+I   C+ G
Sbjct: 346 GAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEG 405

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                 +++ EM  +G    + TYN ++NGLCK G + +AN L++  +  G VPD  T+N
Sbjct: 406 LILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFN 465

Query: 420 ILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
            L++G+CK    E      +K+ S  G+  D   Y S+++  SK
Sbjct: 466 TLIDGYCKQLKMETTIQILNKMWSH-GVTPDVITYNSVLNGLSK 508



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 170/336 (50%), Gaps = 10/336 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + +  L++ LC+  +I  A  +F+    +GL  T + +N LI G C+   + + 
Sbjct: 351 GFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQA 410

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ + M  +G   D++TY+ +INGLCK   + DA  L+++   +G  P+   F TLIDG
Sbjct: 411 LQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDG 470

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  +      M+   +I+++M ++G+ PD ITY  +L+G  K    E  ++  + M++
Sbjct: 471 YCKQLK------METTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVE 524

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  L    C+ GKV EA  ++ E+L  G+ PD  ++  +I  F  NGD K 
Sbjct: 525 KGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKG 584

Query: 364 GFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            ++L + M     +     TYN ++N   +   L     L   M   G  PD  TY +++
Sbjct: 585 AYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMI 644

Query: 423 EGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +G C  GN +   K      EKG +     +  +++
Sbjct: 645 DGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVIN 680



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 168/341 (49%), Gaps = 29/341 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G   +++ FN+ +  LC++G +  A  + D   + GL    V++NTLI G CK  
Sbjct: 241 KVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNS 300

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E  +    +   G+ PD +TY+ LI+G CK   L +AE +L     +G  P++  + 
Sbjct: 301 NVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYC 360

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           +LI+G C+N  ID A                             G + +A ++++EM  N
Sbjct: 361 SLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSEN 420

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G + D  TY ++++G CK G +  A ++  + I +G   D   F  LI G+C+  K+   
Sbjct: 421 GCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETT 480

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++L +M   G+ PD  TY  V++   K    +      + M   G +P   TYN L   
Sbjct: 481 IQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTES 540

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           LCK G++  A  L+D +L+ G+ PD +++  ++ G   +G+
Sbjct: 541 LCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGD 581



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 161/297 (54%), Gaps = 7/297 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G S  ++ +N++++ LCK G + DA  + ++   +G      +FNTLI+G+CK  
Sbjct: 416 EMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQL 475

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++   ++ + M   G+ PDV TY++++NGL K  + +D       M E+G  PN + + 
Sbjct: 476 KMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYN 535

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L +  CK G+++      EA  +VDE+   G+ PD +++  ++ GF   GDL+ A  + 
Sbjct: 536 ILTESLCKAGKVN------EALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLF 589

Query: 299 KEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           + M ++  +      +  +I+ F     +   E++  EM   G  PD  TY ++ID FC 
Sbjct: 590 RRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCI 649

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            G+T +G++ L EM   G +P++ T+  ++N LC   ++  A  ++  M+  G+VP+
Sbjct: 650 TGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 165/336 (49%), Gaps = 9/336 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           Y   PSV  +N +M+ L + G  K A  VF      G+     +F   I   C+ K    
Sbjct: 105 YNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHS 164

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL + M   G + +   Y  ++ G  +EN   +A  L ++M   G+ P+   F  L+ 
Sbjct: 165 ALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLH 224

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CK G +      +E+ ++++++   G+  +  T+ I + G C++G L  A+ +   +I
Sbjct: 225 TLCKKGEV------QESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVI 278

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + G+  D V +  LI G C+   VVEAE+ L +++  GL+PD  TY  +ID +CK G  +
Sbjct: 279 REGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQ 338

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              ++L+     G +P   TY +L+NGLC++ ++  A  L +  L  G+ P  I YN+L+
Sbjct: 339 NAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLI 398

Query: 423 EGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
           +G C+ G            SE G  SD   Y  +++
Sbjct: 399 KGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVIN 434



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 185/375 (49%), Gaps = 9/375 (2%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC-LIDRMMRTNLPTV 112
           G    G   + L+  Y  +G L +A +  +      F +P     C LI+ + + +    
Sbjct: 316 GLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGF-VPDEFTYCSLINGLCQNDEIDR 374

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +   L  G  P+V ++N+L+  LC+EG I  A  + +E  + G  +   ++N +IN
Sbjct: 375 ALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVIN 434

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK   + +   L +     G  PDV+T++ LI+G CK+ +++    +L++M   G+TP
Sbjct: 435 GLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTP 494

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + + ++++G  K      A   ++  +  + M   G  P+KITY IL +  CK G + 
Sbjct: 495 DVITYNSVLNGLSK------AVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVN 548

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMV 351
            ALD+  E++ +GI  D V+F  +ISGF   G +  A ++ R M  +  +    ATY ++
Sbjct: 549 EALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIM 608

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I+ F +  D   G +L  EM + G  P   TY  +++G C  G   +    L  M++ G 
Sbjct: 609 INAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGF 668

Query: 412 VPDDITYNILLEGHC 426
           +P   T+  ++   C
Sbjct: 669 IPSLTTFGRVINCLC 683



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 55/114 (48%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            Y  S +   +N++++   ++  +   + +F E G  G      ++  +I+G C   N D
Sbjct: 595 QYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTD 654

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            G++    M   G  P + T+  +IN LC ++R+ +A  ++H M   G+ P  V
Sbjct: 655 SGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEVV 708


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 187/348 (53%), Gaps = 9/348 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           ++ L    ++L  GY P       L++  C+  ++ DA  + D+  + G     V++N +
Sbjct: 137 SLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAI 196

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+  CK + +++       +   G+RP+V TY+AL+NGLC   R +DA  LL +M +R +
Sbjct: 197 IDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKI 256

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
           TPN + ++ L+D   KNG++       EA++I +EM    ++PD +TY+ L++G C    
Sbjct: 257 TPNVITYSALLDAFVKNGKV------LEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A  +   M+ +G   D V++  LI+GFC+  +V +  ++ R+M + GL  +  TY  
Sbjct: 311 IDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNT 370

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I  F + GD         +M S G  P + TYN L+ GLC +G L+ A ++ + M    
Sbjct: 371 LIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +  D +TY  +++G CK G  ED   L    S KGL  D   YT+++S
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMS 478



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 202/389 (51%), Gaps = 19/389 (4%)

Query: 75  LDDAIQCFR-LLRKHYFRIPARGCRCL--IDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           L DAI  FR +++   F       R L  I +M + ++  ++LG  +E+L  G    +Y 
Sbjct: 66  LHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDV-VISLGKKMEVL--GIRNDLYT 122

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN++++  C   ++  A  V  +  K G     V+  +L+NG C+   + +   L   M 
Sbjct: 123 FNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G RPD+  Y+A+I+ LCK  R++DA     E+  +G+ PN V +T L++G C +GR +
Sbjct: 183 EIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWN 242

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M    + P+ ITY+ LLD F K G +  A +I +EM++  I+ D V
Sbjct: 243 ------DAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIV 296

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +++LI+G C   ++ EA +M   M+  G  PD  +Y  +I+ FCK    + G +L ++M
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKM 356

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G +    TYN L+ G  + G +  A      M   GV PD  TYNILL G C +G  
Sbjct: 357 SQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLL 416

Query: 432 ED----FDKLQ-SEKGLVSDYACYTSLVS 455
           E     F+ +Q SE  L  D   YT+++ 
Sbjct: 417 EKALVIFEDMQKSEMDL--DIVTYTTVIQ 443



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 171/315 (54%), Gaps = 9/315 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA  +F E  K     + V FN L++   K K  D    L   ME  G+R D+YT++
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +IN  C   ++  A  +L +M + G  P+ V   +L++G C+  R+       +A  +V
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVS------DAVSLV 178

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D+M   G  PD + Y  ++D  CK   +  ALD  KE+ ++GI  + V +TAL++G C  
Sbjct: 179 DKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNS 238

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A R+LR+M+K  + P+  TY+ ++D F KNG       + +EM      P + TY
Sbjct: 239 GRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTY 298

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           ++L+NGLC H ++  AN + D M+  G  PD ++YN L+ G CK    ED  KL    S+
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQ 358

Query: 441 KGLVSDYACYTSLVS 455
           +GLV++   Y +L+ 
Sbjct: 359 RGLVNNTVTYNTLIQ 373



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 182/341 (53%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L++   R N  +  +    ++++ GY P +  +N ++  LCK  ++ DA   F E G++G
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKG 220

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++  L+NG C +   ++  RL   M    + P+V TYSAL++   K  ++ +A+
Sbjct: 221 IRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  EM    + P+ V +++LI+G C + RID      EA ++ D M + G  PD ++Y 
Sbjct: 281 EIFEEMVRMSIDPDIVTYSSLINGLCLHDRID------EANQMFDLMVSKGCFPDVVSYN 334

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++GFCK   +E  + + ++M +RG+  + V +  LI GF + G V +A+    +M   
Sbjct: 335 TLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSF 394

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ PD  TY +++   C NG  +    + ++M+       + TY  ++ G+CK G++++A
Sbjct: 395 GVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDA 454

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             L  ++   G+ PD +TY  ++ G C  G   + + L ++
Sbjct: 455 WGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTK 495



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/250 (35%), Positives = 139/250 (55%), Gaps = 6/250 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+V  ++ L+    K GK+ +A+ +F+E  +  +    V++++LING C    +DE  +
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M   G  PDV +Y+ LING CK  R++D   L  +M +RGL  N V + TLI G  
Sbjct: 317 MFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFF 376

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +       GD+ +A++   +M + G++PD  TY ILL G C  G LE AL I ++M K  
Sbjct: 377 Q------VGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           ++LD V +T +I G C+ GKV +A  +   +   GLKPD  TYT ++   C  G      
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVE 490

Query: 366 RLLKEMRSDG 375
            L  +M+ +G
Sbjct: 491 ALYTKMKQEG 500



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 69/119 (57%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+ ++  +G SP ++ +N+L+  LC  G ++ A ++F++  K  +    V++ T+I G C
Sbjct: 387 FFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMC 446

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           K   +++ + L   +   G++PD+ TY+ +++GLC +    + E L  +M + GL  ND
Sbjct: 447 KTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKND 505


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 214/462 (46%), Gaps = 60/462 (12%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+  +  Y+ +++ LVA K +SQ    +H  + K G+  +   F                
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCY-AIHEEMLKAGIAPNTFSF---------------- 157

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + L+  +      DDA+ CF ++++   +        L+D + +  +       + E++ 
Sbjct: 158 NILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMA 217

Query: 123 YGYSPSVYVFNVLMHK-LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            G+ P     +  M + L K  ++K+A+ VF +  K G    A+++NT+I+G  KA +  
Sbjct: 218 MGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQ 277

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E  ++   M      P   TY  L+N LCK   L+ AE L   M   G  PN VI+T+LI
Sbjct: 278 EALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G  K+GR      MKEA  + DEM   G  PD IT+T+++DG CK G+ E A    +EM
Sbjct: 338 HGFAKSGR------MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEM 391

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G + + V +T +I G  + G+V  A R+++ M+  G  PD  TY  ++D FCK G  
Sbjct: 392 MRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMN--------------------------------- 388
               +LL E+      P ++ Y++L+N                                 
Sbjct: 452 DEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCS 511

Query: 389 ---GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              GLCK G+L  A  +   M+  G  PD  TYNIL+ G C+
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCR 553



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 189/361 (52%), Gaps = 10/361 (2%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CL++ ++     +     + E+L  G +P+ + FN+L+    +  +  DA   F+   ++
Sbjct: 124 CLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRK 183

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDD 217
                  +F  L++  CKA   ++ F +   M   G + PD   ++A++  L K  R+ +
Sbjct: 184 RCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKE 243

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +  +M + G  P+ + + T+IDG  K      AG  +EA K++D M      P ++T
Sbjct: 244 AREVFGQMEKCGFPPDAIAYNTMIDGLAK------AGHAQEALKVLDNMLAKACVPTEVT 297

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y IL++  CK G LE A ++ + M   G   ++V +T+LI GF + G++ EA  +  EM+
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV 357

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G +PD  T+T++ID  CK+G+ +   +  +EM   G  P V TY  ++ GL K G++ 
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVS---DYACYTSLV 454
           NA  ++  M+  G  PD +TY  LL+G CK G  ++  +L  E    S   +   Y+SLV
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 455 S 455
           +
Sbjct: 478 N 478



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 183/418 (43%), Gaps = 36/418 (8%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L+ A + FR++    FR  +     LI    ++         + E+++ GY P V   
Sbjct: 309 GTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITH 368

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            V++  LCK G  + A   F+E  + G     V++ T+I G  K   +   FR+   M  
Sbjct: 369 TVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIA 428

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID- 251
            G  PD  TY  L++G CK  RLD+A  LL E+ +   +PN  ++++L++G C  G ++ 
Sbjct: 429 HGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEK 488

Query: 252 -----------------------------MAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
                                          G + EA +I   M + G  PD  TY IL+
Sbjct: 489 TLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILI 548

Query: 283 DGFC--KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           +G C  +E  +E A  +  ++ K G   D V +T L  G C+ G+V  A +ML E    G
Sbjct: 549 NGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRG 608

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
              D   YT +    C  G       L +EM   G  P    Y  ++NGL K  +L++A 
Sbjct: 609 WNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDAC 668

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
              D M+  G  P   TY  L++  C  GN ++    F+ + +   LV     Y +L+
Sbjct: 669 KFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALI 726



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 184/387 (47%), Gaps = 12/387 (3%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           + +A + F  + K  F   A     +ID + +       L     +L     P+   + +
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++ LCK G ++ A+ +F      G    +V + +LI+G  K+  + E   L   M  +G
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            RPDV T++ +I+GLCK    + A     EM   G  PN V +TT+I G  K GR+    
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV---- 416

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
               A +I+  M  +G  PD +TY  LLDGFCK G L+ A  +  E+ K     +   ++
Sbjct: 417 --ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYS 474

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           +L++G C GG V +    L E  K   +  D      +I   CK G      R+ + M S
Sbjct: 475 SLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVS 534

Query: 374 DGHLPAVETYNALMNGLC--KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           +G  P   TYN L+NGLC  +  +++ A  LL  +  +G +PD +TY  L  G CK G  
Sbjct: 535 EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEV 594

Query: 432 EDFDKL---QSEKGLVSDYACYTSLVS 455
           +   K+    S +G  +D   YT+L +
Sbjct: 595 DRAVKMLEEASSRGWNADVVAYTALCT 621



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 163/340 (47%), Gaps = 49/340 (14%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN---TLINGHCKAKNLDE 182
           SP++ +++ L++ LC  G ++  + + D F +    A  +      ++I G CK   LDE
Sbjct: 467 SPNLQLYSSLVNGLCDGGSVE--KTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDE 524

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCK--ENRLDDAELLLHEMCERGLTPNDVIFTTL 240
             R+   M   G +PD  TY+ LINGLC+  ENR++ A  LLH++ + G  P+ V +T L
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPL 584

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
             G CK G +D       A K+++E  + G N D + YT L  G C +G ++ A+ + +E
Sbjct: 585 CIGLCKIGEVD------RAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQE 638

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID------- 353
           M+++G   D  A+  +I+G  +  K+ +A +   EM+  G KP  ATYT ++        
Sbjct: 639 MVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGN 698

Query: 354 -----------------------------CFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
                                         FCK        +L ++M S G++P   T  
Sbjct: 699 VDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSA 758

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +L +GL + G+ + A  LL  M   G  P   T+  +L+G
Sbjct: 759 SLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDG 798



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 38/306 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E LD G   S+ V       LCK G++ +A  +F      G    A ++N LING C+++
Sbjct: 502 ETLDPGLCCSIIV------GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSR 555

Query: 179 N--LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              ++  F L   +E  G  PD  TY+ L  GLCK   +D A  +L E   RG   + V 
Sbjct: 556 ENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVA 615

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           +T L  G C  G++D A                               +++A K  DEM 
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMI 675

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGKV 326
             G  P   TYT L+   C  G+++ A    + M+ RG  + +V  + ALI GFC+  KV
Sbjct: 676 GKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKV 735

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A ++  +M+  G  P   T   + D   ++G T+    LL+EM + G  P   T+ A+
Sbjct: 736 DAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAI 795

Query: 387 MNGLCK 392
           ++GL K
Sbjct: 796 LDGLRK 801



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 10/316 (3%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           PGL   ++++     G LD+A + F+ +     +  A     LI+ + R+    V   F 
Sbjct: 506 PGLCC-SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFA 564

Query: 118 L--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           L  ++   GY P    +  L   LCK G++  A  + +E   RG +A  V++  L  G C
Sbjct: 565 LLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLC 624

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +D    L   M   G  PD   Y  +INGL K  +L+DA     EM  +G  P   
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVA 684

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESA 294
            +T L+   C  G +D      EA    + M   G L    + Y  L+ GFCK   +++A
Sbjct: 685 TYTALVQALCHAGNVD------EAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAA 738

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L + ++MI RG     V   +L  G  R GK  +A+ +L+EM   G  P  AT+T ++D 
Sbjct: 739 LKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDG 798

Query: 355 FCKNGDTKTGFRLLKE 370
             K+ ++    +L++E
Sbjct: 799 LRKSDESGKLLKLVQE 814



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 135/302 (44%), Gaps = 33/302 (10%)

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E +G + DV+TY+ L+N L  E        +  EM + G+ PN   F  LI    +  R 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 251 DMAGDMKEARK-------------IVDEMCTNGLN-----------------PDKITYTI 280
           D A    E  K             +VD +C  G++                 PD+  +T 
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++    K   ++ A ++  +M K G   D +A+  +I G  + G   EA ++L  ML   
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA 290

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
             P + TY ++++  CK G  +    L + M + G  P    Y +L++G  K G++K A 
Sbjct: 291 CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEAC 350

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKS 457
            L D M++ G  PD IT+ ++++G CK GN E   K   E    G   +   YT+++   
Sbjct: 351 SLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410

Query: 458 SK 459
           SK
Sbjct: 411 SK 412


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 210/435 (48%), Gaps = 14/435 (3%)

Query: 34  VSKKG-MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           +SK G +G++  +F S +E RG     +V  AL+        +D A++    ++K +   
Sbjct: 136 LSKAGRIGAAVRIFKS-MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ-MV 151
                  LID + ++        F+ E+L+ G  P VY +N+L+   CK G    A   +
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSL 254

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
             E    G      ++  +++   K K ++E   L   +  +G  P + TY+AL+NGLCK
Sbjct: 255 AQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCK 314

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
             RL++A  LL ++ + G TP+ V +T+LIDG  K  R        EA K+  EM   GL
Sbjct: 315 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR------SFEAYKLFKEMALRGL 368

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             D + YT L+    + G +  A  + K M   G   D V  + +I G  + G++  A R
Sbjct: 369 ALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVR 428

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           + + M   GL P++  Y+ +I   CK         +L +M+     P   TYN L++GLC
Sbjct: 429 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 488

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDY 447
           K G ++ A    D ML+ G  PD  TYNIL+ G CK GN +     FD + S +   ++ 
Sbjct: 489 KSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR-CSANV 547

Query: 448 ACYTSLVSKSSKYRQ 462
             Y +L+S   K RQ
Sbjct: 548 VTYGALISGLCKRRQ 562



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 185/375 (49%), Gaps = 45/375 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I   G +P++  +N L++ LCK G++++A  +  +    G     V++ +LI+G  K K
Sbjct: 11  KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 70

Query: 179 NLDEGFRL-----------------------------------KSVMEGSGMRPDVYTYS 203
              E ++L                                      M   G  PDV T S
Sbjct: 71  RSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLS 130

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +I+GL K  R+  A  +   M  RGL PN+V+++ LI G CK  ++D A +M    K  
Sbjct: 131 TMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK-- 188

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
              CT    PD ITY +L+DG CK GD+E+A     EM++ G + D   +  LISGFC+ 
Sbjct: 189 KAFCT----PDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKA 244

Query: 324 GKVVEAERMLREMLKV-GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           G    A   L +   + G   D  TYT ++D   KN   +    L++++ ++G  P + T
Sbjct: 245 GNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIAT 304

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-- 440
           YNAL+NGLCK G+L+ A  LL  ++D G  PD +TY  L++G  K     +  KL  E  
Sbjct: 305 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 364

Query: 441 -KGLVSDYACYTSLV 454
            +GL  D  CYT+L+
Sbjct: 365 LRGLALDTVCYTALI 379



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 200/446 (44%), Gaps = 59/446 (13%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLG 115
           +AL+     +G L++AI    LLRK    I   GC         LID + +         
Sbjct: 25  NALLNGLCKMGRLEEAID---LLRK----IVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 77

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G +     +  L+ +L + GKI  A  V+      G     V+ +T+I+G  
Sbjct: 78  LFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 137

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  +    R+   ME  G+ P+   YSALI+GLCK  ++D A  +L +M +   TP+ +
Sbjct: 138 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 197

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD----- 290
            +  LIDG CK+      GD++ AR   DEM   G  PD  TY IL+ GFCK G+     
Sbjct: 198 TYNVLIDGLCKS------GDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAS 251

Query: 291 -------------------------------LESALDIRKEMIKRGIELDNVAFTALISG 319
                                          +E A+ + +++   G       + AL++G
Sbjct: 252 HSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNG 311

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C+ G++ EA  +LR+++  G  PD  TYT +ID   K   +   ++L KEM   G    
Sbjct: 312 LCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALD 371

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---PEDFDK 436
              Y AL+  L + G++  A+ +  TM   G VPD +T + +++G  K G         K
Sbjct: 372 TVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 431

Query: 437 LQSEKGLVSDYACYTSLVSKSSKYRQ 462
               +GL  +   Y++L+    K R+
Sbjct: 432 SMEARGLAPNEVVYSALIHGLCKARK 457



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 144/287 (50%), Gaps = 10/287 (3%)

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           ++E   L   +  +G  P + TY+AL+NGLCK  RL++A  LL ++ + G TP+ V +T+
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LIDG  K  R        EA K+  EM   GL  D + YT L+    + G +  A  + K
Sbjct: 62  LIDGLGKEKR------SFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK 115

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M   G   D V  + +I G  + G++  A R+ + M   GL P++  Y+ +I   CK  
Sbjct: 116 TMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 175

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +L +M+     P   TYN L++GLCK G ++ A    D ML+ G  PD  TYN
Sbjct: 176 KMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 235

Query: 420 ILLEGHCKHGNPE----DFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           IL+ G CK GN +       +  +  G   D   YT++V   +K ++
Sbjct: 236 ILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKK 282



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 11/246 (4%)

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           ++++A  L+ ++   G TP    +  L++G CK GR++ A D+   RKIVD    NG  P
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL--LRKIVD----NGCTP 54

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D +TYT L+DG  KE     A  + KEM  RG+ LD V +TALI    + GK+ +A  + 
Sbjct: 55  DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVY 114

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           + M   G  PD  T + +ID   K G      R+ K M + G  P    Y+AL++GLCK 
Sbjct: 115 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 174

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
            ++  A  +L  M      PD ITYN+L++G CK G+ E     FD++  E G   D   
Sbjct: 175 RKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEML-EAGCKPDVYT 233

Query: 450 YTSLVS 455
           Y  L+S
Sbjct: 234 YNILIS 239



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 34  VSKKG-MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           +SK G +G++  +F S +E RG     +V  AL+        +D A++    ++K +   
Sbjct: 417 LSKAGRIGAAVRIFKS-MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
                  LID + ++        F+ E+L+ G  P VY +N+L+   CK G    A  VF
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVF 535

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           D+       A  V++  LI+G CK + L + 
Sbjct: 536 DDMSSSRCSANVVTYGALISGLCKRRQLTKA 566


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 185/349 (53%), Gaps = 18/349 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           CRC      +T      LG   +++  GY P    FN L++ LC EGK+  A ++ D   
Sbjct: 134 CRCC-----KTCFAYSVLG---KVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMV 185

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G     V++N+++NG C++ +    F +   ME   ++ DV+TYS +I+ LC++  +D
Sbjct: 186 ENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L  EM  +G+  + V + +L+ G CK      AG   +   ++ +M +  + P+ I
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCK------AGKWNDGALLLKDMVSREIVPNVI 299

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+ +LLD F KEG L+ A ++ KEMI RGI  + + +  L+ G+C   ++ EA  ML  M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           ++    PD  T+T +I  +C       G ++ + +   G +    TY+ L+ G C+ G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           K A  L   M+  GV+PD +TY ILL+G C +G  E     F+ LQ  K
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 167/297 (56%), Gaps = 6/297 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FNVL+    KEGK+++A  ++ E   RG+    +++NTL++G+C    L E   +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M  +   PD+ T+++LI G C   R+DD   +   + +RGL  N V ++ L+ G C+
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G+I      K A ++  EM ++G+ PD +TY ILLDG C  G LE AL+I +++ K  +
Sbjct: 416 SGKI------KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +L  V +T +I G C+GGKV +A  +   +   G+KP+  TYT++I   CK G       
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           LL++M  DG+ P   TYN L+    + G L  +  L++ M   G   D  +  ++++
Sbjct: 530 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 178/347 (51%), Gaps = 41/347 (11%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ ++ ++  LC++G I  A  +F E   +G+ ++ V++N+L+ G CKA   ++G  L  
Sbjct: 228 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + P+V T++ L++   KE +L +A  L  EM  RG++PN + + TL+DG+C   
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R      + EA  ++D M  N  +PD +T+T L+ G+C    ++  + + + + KRG+  
Sbjct: 348 R------LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA 401

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + V ++ L+ GFC+ GK+  AE + +EM+  G+ PD  TY +++D  C NG  +    + 
Sbjct: 402 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461

Query: 369 KEMRSD-----------------------------------GHLPAVETYNALMNGLCKH 393
           ++++                                     G  P V TY  +++GLCK 
Sbjct: 462 EDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 521

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           G L  AN+LL  M + G  P+D TYN L+  H + G+     KL  E
Sbjct: 522 GSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 25/383 (6%)

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           ++ FR+++ H  +             +RT+L   T+  +L   +  +S S+   NV   +
Sbjct: 11  LKAFRMVQPHLLKTGT----------LRTDL-LCTISSFLSSCERDFS-SITNGNVCFRE 58

Query: 139 LCKEG----KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
             + G    K  DA  +F E  +       V F+   +   + K  +        +E +G
Sbjct: 59  RLRSGIVDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNG 118

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +  ++YT + +IN  C+  +   A  +L ++ + G  P+   F TLI+G C  G++    
Sbjct: 119 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKV---- 174

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +A  +VD M  NG  PD +TY  +++G C+ GD   A D+ ++M +R ++ D   ++
Sbjct: 175 --SKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYS 232

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            +I   CR G +  A  + +EM   G+K    TY  ++   CK G    G  LLK+M S 
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
             +P V T+N L++   K G+L+ AN L   M+  G+ P+ ITYN L++G+C      + 
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 435 DK---LQSEKGLVSDYACYTSLV 454
           +    L        D   +TSL+
Sbjct: 353 NNMLDLMVRNKCSPDIVTFTSLI 375



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 50  LETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           L  R    P +V   +L+  Y  +  +DD ++ FR + K      A     L+    ++ 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              +    + E++ +G  P V  + +L+  LC  GK++ A  +F++  K  +    V + 
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           T+I G CK   +++ + L   +   G++P+V TY+ +I+GLCK+  L +A +LL +M E 
Sbjct: 478 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           G  PND  + TLI  H ++      GD+  + K+++EM + G + D  +  +++D
Sbjct: 538 GNAPNDCTYNTLIRAHLRD------GDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 64/272 (23%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E++  G SP++  +N LM   C + ++ +A  + D   +       V+F +LI G+C
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
             K +D+G ++   +   G+  +  TYS L+ G C+  ++  AE L  EM   G+ P+ +
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 236 IFTTLIDGHCKNGRIDMA----GDMKEAR---------KIVDEMCT-------------- 268
            +  L+DG C NG+++ A     D+++++          I++ MC               
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499

Query: 269 --NGLNPDKITYTILLDGFC-----------------------------------KEGDL 291
              G+ P+ +TYT+++ G C                                   ++GDL
Sbjct: 500 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDL 559

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            ++  + +EM   G   D  +   +I     G
Sbjct: 560 TASAKLIEEMKSCGFSADASSIKMVIDMLLSG 591



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G++LD L     D G L+ A++ F  L+K    +       +I+ M +          + 
Sbjct: 442 GILLDGL----CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            +   G  P+V  + V++  LCK+G + +A ++  +  + G      ++NTLI  H +  
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDG 557

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           +L    +L   M+  G   D  +   +I+ L
Sbjct: 558 DLTASAKLIEEMKSCGFSADASSIKMVIDML 588


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 194/349 (55%), Gaps = 13/349 (3%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +T GF +  +IL  GY P     N L+  LC +G++K A    D+   +G     VS+ T
Sbjct: 110 ITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGT 169

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     +L   ++G   +P+V  YS +I+ LCK   + +A  L  EM  +G
Sbjct: 170 LINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++ + V ++TLI G C      + G +KEA  +++EM    +NP+  TY IL+D  CKEG
Sbjct: 230 ISADVVTYSTLIYGFC------IEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A  +   M+K  ++ D + ++ L+ G+    +V +A+ +   M  +G+ PD  TYT
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I+ FCKN        L KEM     +P + TY++L++GLCK G++     L+D M D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDR 403

Query: 410 GVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           G   + ITY+ L++G CK+G+ +     F+K++ ++G+  +   +T L+
Sbjct: 404 GQPANVITYSSLIDGLCKNGHLDRAIALFNKMK-DQGIRPNTFTFTILL 451



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 174/303 (57%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V +++ ++  LCK   + +A  +F E   +G+ A  V+++TLI G C    L E   L
Sbjct: 197 PNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGL 256

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    + P+VYTY+ L++ LCKE ++ +A+ +L  M +  + P+ + ++TL+DG+  
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF- 315

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                +  ++K+A+ + + M   G+ PD  TYTIL++GFCK   ++ AL++ KEM ++ +
Sbjct: 316 -----LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               V +++LI G C+ G++     ++ EM   G   +  TY+ +ID  CKNG       
Sbjct: 371 VPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIA 430

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  +M+  G  P   T+  L++GLCK G+LK+A  +   +L  G   +  TYN++++GHC
Sbjct: 431 LFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHC 490

Query: 427 KHG 429
           K G
Sbjct: 491 KQG 493



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 174/323 (53%), Gaps = 6/323 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +  L +   G + E+   G S  V  ++ L++  C EGK+K+A  + +E   + 
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT 264

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++    ++N L++  CK   + E   + +VM  + ++PDV TYS L++G      +  A+
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M   G+TP+   +T LI+G CKN  +D      EA  +  EM    + P  +TY+
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVD------EALNLFKEMHQKNMVPGIVTYS 378

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG CK G +    D+  EM  RG   + + +++LI G C+ G +  A  +  +M   
Sbjct: 379 SLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQ 438

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P+  T+T+++D  CK G  K    + +++ + G+   V TYN +++G CK G L+ A
Sbjct: 439 GIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEA 498

Query: 400 NMLLDTMLDLGVVPDDITYNILL 422
             +L  M D G +PD +T+ I++
Sbjct: 499 LTMLSKMEDNGCIPDAVTFEIII 521



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 8/233 (3%)

Query: 111  TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            T       +IL  GY P    F  L++ LC +G++  A    D+   +G     VS+ TL
Sbjct: 978  TFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTL 1037

Query: 171  INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
            ING CK  +     +L   ++G   +PDV  Y+ +I+ LCK   +  A  L  EM  +G+
Sbjct: 1038 INGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGI 1097

Query: 231  TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            + + V + TLI G C      + G +KEA  ++++M    +NP+  TY IL+D  CKEG 
Sbjct: 1098 SADVVTYNTLIYGFC------IVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGK 1151

Query: 291  --LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
              L+ +L +  +M   G + + V F  +IS      +  + E++L EM+  GL
Sbjct: 1152 DLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 6/209 (2%)

Query: 221  LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
            L H +  +G+ P+      LI+  C  G+I           I+ ++   G +PD IT+T 
Sbjct: 948  LSHRLELKGIQPDLFTLNILINCFCHMGQITFN------FSILAKILKRGYHPDTITFTT 1001

Query: 281  LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
            L++G C +G +  AL    +++ +G +L+ V++  LI+G C+ G    A ++LR++    
Sbjct: 1002 LINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRL 1061

Query: 341  LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
             KPD   Y  +ID  CK+      + L  EM   G    V TYN L+ G C  G+LK A 
Sbjct: 1062 TKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAI 1121

Query: 401  MLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             LL+ M+   + P+  TYNIL++  CK G
Sbjct: 1122 GLLNKMVLKTINPNVRTYNILVDALCKEG 1150



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P +  ++ +++   K      A  L H +  +G+ P+ +    LI+  C  G+I      
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFG--- 113

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                ++ ++   G  PD +T   L+ G C +G ++ AL    +++ +G +L+ V++  L
Sbjct: 114 ---FSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTL 170

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G C+ G    A ++L+++     KP+   Y+ +ID  CK       + L  EM   G 
Sbjct: 171 INGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGI 230

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
              V TY+ L+ G C  G+LK A  LL+ M+   + P+  TYNIL++  CK G
Sbjct: 231 SADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 18/291 (6%)

Query: 89   YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
            Y RIP           M+     V+L   LE+   G  P ++  N+L++  C  G+I   
Sbjct: 931  YIRIP--------HNPMKHYSTAVSLSHRLEL--KGIQPDLFTLNILINCFCHMGQITFN 980

Query: 149  QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
              +  +  KRG H   ++F TLING C    +++       +   G + +  +Y  LING
Sbjct: 981  FSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLING 1040

Query: 209  LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            +CK      A  LL ++  R   P+ V++ T+ID  CK+  +       +A  +  EM  
Sbjct: 1041 VCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVS------KAYGLFFEMNV 1094

Query: 269  NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK--V 326
             G++ D +TY  L+ GFC  G L+ A+ +  +M+ + I  +   +  L+   C+ GK  +
Sbjct: 1095 KGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLL 1154

Query: 327  VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
             E+  ML +M   G K +  T+ ++I    +  +     +LL EM + G L
Sbjct: 1155 DESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGLL 1205



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 16/239 (6%)

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +DDA    + M     TP  + F  ++D   K      A  +    ++       G+ PD
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLEL------KGIQPD 93

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            IT  IL++ FC  G +     +  +++KRG   D V    LI G C  G+V +A     
Sbjct: 94  LITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHD 153

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--PAVETYNALMNGLCK 392
           ++L  G + +  +Y  +I+  CK GDT+   +LL+++  DG L  P V  Y+ +++ LCK
Sbjct: 154 KLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKI--DGRLTKPNVVMYSTIIDALCK 211

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
           +  +  A  L   M   G+  D +TY+ L+ G C  G      KL+   GL+++    T
Sbjct: 212 YQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEG------KLKEAIGLLNEMVLKT 264



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 293  SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            +A+ +   +  +GI+ D      LI+ FC  G++     +L ++LK G  PD  T+T +I
Sbjct: 944  TAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLI 1003

Query: 353  DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            +  C  G          ++ + G      +Y  L+NG+CK G  + A  LL  +      
Sbjct: 1004 NGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTK 1063

Query: 413  PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            PD + YN +++  CKH        L  E   KG+ +D   Y +L+
Sbjct: 1064 PDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLI 1108


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 39/365 (10%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G++P+   + VLM+ LC+ GK+ +AQ++ ++          V F  LING+ K+  LDE 
Sbjct: 308 GFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT----PNDVHFTILINGYVKSGRLDEA 363

Query: 184 FR-LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L   M  +G RPDV+T++ LI+GLCK+  +  A  ++++M   G TPN + +TTL+D
Sbjct: 364 NAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLD 423

Query: 243 GHCKNGRIDMAG-----------------------------DMKEARKIVDEMCTNGLNP 273
           G CK  +++ AG                              + +A  ++ EM   G  P
Sbjct: 424 GFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKP 483

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D  T+  L+ G CK    E AL + ++M+  G+  + V +  LI  F RGG + EA +++
Sbjct: 484 DIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLV 543

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            +ML  G   D+ TY  +I  FCK G T+    L  EM     +P+  + N L+NGLC+ 
Sbjct: 544 NDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRV 603

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           G++ NA  LL  M+  G+ PD +TYN L+ G CK GN  +    F+KLQ+E G+  D   
Sbjct: 604 GKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAE-GIQPDAIT 662

Query: 450 YTSLV 454
           Y +L+
Sbjct: 663 YNTLI 667



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 233/514 (45%), Gaps = 91/514 (17%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPGLVLDA 64
           T   Y  ++  L A K   +  D L L + ++G+    SLF  I++  G  +LPG     
Sbjct: 101 TFDVYHVLIDKLGAAK-EFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRM 159

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+ +          + C     K Y          ++D ++  N P+V    + E+L  G
Sbjct: 160 LLDM--------KGVYCCEPTFKSY--------NVVLDILVSANCPSVAANVFYEMLSKG 203

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV------------------- 165
             P+VY F V+M  LC   ++ +A  +  +  K G    +V                   
Sbjct: 204 VIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEAL 263

Query: 166 ----------------SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
                           +FN +I G C+   + EG +L   M   G  P+  TY  L+NGL
Sbjct: 264 KLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGL 323

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------- 253
           C+  ++D+A++LL+++     TPNDV FT LI+G+ K+GR+D A                
Sbjct: 324 CRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPD 379

Query: 254 --------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                         G M  A  +V++M  NG  P+ ITYT LLDGFCK+  LE A  +  
Sbjct: 380 VFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLN 439

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  +G EL+ + +  L+   C+ GKV +A  ML EM   G KPD  T+  +I   CK  
Sbjct: 440 EMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVD 499

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +    L ++M  DG +    TYN L++   + G ++ A  L++ ML  G   D+ITYN
Sbjct: 500 RKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYN 559

Query: 420 ILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
            L++  CK G  E     FD++  +  + S+ +C
Sbjct: 560 GLIKAFCKLGATEKALGLFDEMVRKDLVPSNISC 593



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 167/310 (53%), Gaps = 6/310 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P++  +  L+   CK+ ++++A  V +E   +G     + +N L+   CK   + + 
Sbjct: 410 GCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKA 469

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G +PD++T++ LI GLCK +R +DA  L  +M   G+  N V + TLI  
Sbjct: 470 LDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHA 529

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + G I      +EA K+V++M   G   D+ITY  L+  FCK G  E AL +  EM++
Sbjct: 530 FLRGGAI------QEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVR 583

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +   N++   LI+G CR GKV  A  +LR+M+  GL PD  TY  +I+  CK G+ + 
Sbjct: 584 KDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIRE 643

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            F L  +++++G  P   TYN L+   C+ G   +A +LL   ++   +P+D+T+ IL+ 
Sbjct: 644 AFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVS 703

Query: 424 GHCKHGNPED 433
              K    E+
Sbjct: 704 NFIKEIGKEN 713



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G  P ++ FN L+  LCK  + +DA  ++ +    G+ A  V++NTLI+   +  
Sbjct: 475 EMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGG 534

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E  +L + M   G   D  TY+ LI   CK    + A  L  EM  + L P+++   
Sbjct: 535 AIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCN 594

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G C+ G++        A +++ +M   GL PD +TY  L++G CK G++  A ++ 
Sbjct: 595 LLINGLCRVGKV------CNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLF 648

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++   GI+ D + +  LI   CR G   +A  +L   ++    P+D T+ +++  F K 
Sbjct: 649 NKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKE 708

Query: 359 GDTKTG 364
              + G
Sbjct: 709 IGKENG 714


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 183/345 (53%), Gaps = 29/345 (8%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G+SP+  ++N LM+   K  +I  A M+++E  K+G+    ++FN L++GH K    +
Sbjct: 364 EMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREE 423

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +G RL   +   G+ PD   +   ++GLC   RLD+A   L +M E+GL+P+ + F ++I
Sbjct: 424 DGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVI 483

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
             + + G  D A                             G ++EA +++ +M   GL+
Sbjct: 484 AAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLS 543

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            + + +T+LLD F K GD+  A  +  EM +RGI  D VAF+A I G  + G V EA  +
Sbjct: 544 VNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNV 603

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             EML+ GL P++  Y  +I  FCK G      +L K MR  G LP + T N ++ GLCK
Sbjct: 604 FLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCK 663

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            G++++A  +   M   G+ PD ITYN L+ G+CK  +  + D L
Sbjct: 664 QGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNL 708



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 179/336 (53%), Gaps = 11/336 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P   +F++ +  LC  G++ +A     +  ++GL  + ++FN++I  + +A   D+ 
Sbjct: 436 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKA 495

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F    +M   G+ P   T S+L+ GL    RL +A  L+ +M E+GL+ N++ FT L+D 
Sbjct: 496 FEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDK 555

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G      D+  A+ +  EM   G+ PD + ++  +DG  K+G +E A ++  EM++
Sbjct: 556 FFKRG------DVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLR 609

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  +N A+ +LI GFC+ GK+ EA ++ + M   GL PD  T  M+I   CK G  ++
Sbjct: 610 KGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRS 669

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +  +M   G  P + TYN L+NG CK   + NA+ L++ M   G  PD  TYNI + 
Sbjct: 670 AINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIH 729

Query: 424 GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           G C            D+L S  G+V +   Y S+++
Sbjct: 730 GFCSSRRMNRAVLMLDELVS-AGIVPNTVTYNSMLN 764



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 213/460 (46%), Gaps = 14/460 (3%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL---PGLVL 62
           T+ +     H L A ++   A+D++  ++++ G+  S  L   +   RG H+      VL
Sbjct: 142 TIRSCCVAAHLLAAEELRHVAQDVIWWVIARIGVLRSGDLVEFMW--RGHHVYESDFSVL 199

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D+LM  +V+      A++    +R+   R  A G   L   ++R          + +++ 
Sbjct: 200 DSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIR 259

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P  Y F+ ++   C++G I   + +     K      A ++N +IN  C      +
Sbjct: 260 RGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSD 319

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
                ++M   G  P V T++ +IN  CKE  + +A  L   + E G +PN +++ TL++
Sbjct: 320 ALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMN 379

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+ K   ID      +A  + +EM   G+ PD IT+ IL+ G  K G  E    + K++ 
Sbjct: 380 GYVKMREID------QANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDIS 433

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G+  D   F   +SG C  G++ EA   L +ML+ GL P    +  VI  + + G   
Sbjct: 434 VLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLED 493

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             F   K M   G  P+  T ++L+ GL  +G+L+ A  L+  M++ G+  +++ + +LL
Sbjct: 494 KAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLL 553

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           +   K G+      L  E   +G+  D   +++ +   SK
Sbjct: 554 DKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSK 593



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 194/402 (48%), Gaps = 26/402 (6%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG-CRCLIDRMM---RTNLPTVTLG 115
           +  ++++  Y   G  D A + ++L+  H+   P+   C  L+  +    R    T  +G
Sbjct: 477 IAFNSVIAAYSQAGLEDKAFEAYKLM-VHFGLTPSPSTCSSLLMGLSINGRLQEATELIG 535

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
              ++++ G S +   F VL+ K  K G +  AQ ++ E  +RG+    V+F+  I+G  
Sbjct: 536 ---QMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLS 592

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   ++E + +   M   G+ P+ + Y++LI G CK  +L++A  L   M  RGL P+  
Sbjct: 593 KQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPD-- 650

Query: 236 IFTT--LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           IFTT  +I G CK GR      M+ A  +  +M   GL+PD ITY  L++G+CK  D+ +
Sbjct: 651 IFTTNMIIGGLCKQGR------MRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVN 704

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++   M   G   D   +   I GFC   ++  A  ML E++  G+ P+  TY  +++
Sbjct: 705 ADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLN 764

Query: 354 CFCKNGDTKTGF---RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
             C +   +      RLLK       +P V T N L++   K G  +   M    + ++ 
Sbjct: 765 GVCSDILDRAMILTARLLKM----AFVPNVVTANLLLSQFYKQGMPERTLMWGHKLSEIP 820

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTS 452
              D+ITY I+ + H       DF ++ S K L  D+  Y +
Sbjct: 821 YAFDEITYKIMDKAH-HILEDADFSRVTSAKSLFLDFLMYIT 861


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 207/393 (52%), Gaps = 14/393 (3%)

Query: 45  LFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           LF+ ++E+R   LP ++    L+ V   +   D  I   + L+          C  L++ 
Sbjct: 58  LFSHMVESR--PLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNC 115

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
             +++ P +   F  +++  G+ P ++ F  L++  C   +I++A  + ++  + G+   
Sbjct: 116 FCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPD 175

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V + T+I+  CK  ++D    L + ME  G+RPDV  Y++L+NGLC   R  DA+LLL 
Sbjct: 176 VVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLR 235

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
            M +R + P+ + F  LID   K G+      + +A+++ +EM    + P+  TYT L++
Sbjct: 236 GMMKRKIKPDVITFNALIDAFVKEGK------LLDAKELYNEMIQMSIAPNIFTYTSLIN 289

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G C EG L+ A  +   M  +G   D VA+T+LI+GFC+  KV +A ++  EM + GL  
Sbjct: 290 GLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTG 349

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +  TYT +I  F   G       +   M S G  P + TYN L++ LC +G++  A M+ 
Sbjct: 350 NTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIF 409

Query: 404 DTM----LDLGVVPDDITYNILLEGHCKHGNPE 432
           + M    +D GV P+  TYN+LL G C +G  E
Sbjct: 410 EDMQKREID-GVPPNIRTYNVLLHGLCYNGKLE 441



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 9/296 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + + F  L+N   K K  D    L   ++  G+  D+YT + L+N  C+ ++   A   L
Sbjct: 70  SIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFL 129

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            ++ + G  P+   FT+LI+G C   RI+      EA  +V++M   G+ PD + YT ++
Sbjct: 130 GKLMKLGFEPDIFTFTSLINGFCLGNRIE------EAMSMVNQMVEMGIKPDVVIYTTII 183

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           D  CK G +++AL +  +M   GI  D V +T+L++G C  G+  +A+ +LR M+K  +K
Sbjct: 184 DSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIK 243

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  T+  +ID F K G       L  EM      P + TY +L+NGLC  G+L  A  +
Sbjct: 244 PDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQM 303

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
              M   G  PD + Y  L+ G CK    ED  K+    S+KGL  +   YT+L+ 
Sbjct: 304 FYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQ 359



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 13/290 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  FN L+    KEGK+ DA+ +++E  +  +     ++ +LING C    LDE  ++
Sbjct: 244 PDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQM 303

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +ME  G  PDV  Y++LING CK  +++DA  + +EM ++GLT N + +TTLI G   
Sbjct: 304 FYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQG--- 360

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                + G    A+++   M + G+ P+  TY +LL   C  G +  AL I ++M KR  
Sbjct: 361 ---FGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKR-- 415

Query: 307 ELDNV-----AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           E+D V      +  L+ G C  GK+ +A  +  +M K  +     TYT++I   CK G  
Sbjct: 416 EIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKV 475

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           K    L   + S G  P V TY  +++GL + G +  A++L   M + GV
Sbjct: 476 KDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGV 525



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 135/287 (47%), Gaps = 44/287 (15%)

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           + ++A  L   M E    P+ + FT L++   K  + D+  ++ +  +I+      G++ 
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIM------GVSN 104

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D  T  +L++ FC+      A     +++K G E D   FT+LI+GFC G ++ EA  M+
Sbjct: 105 DLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMV 164

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            +M+++G+KPD   YT +ID  CKNG       L  +M + G  P V  Y +L+NGLC  
Sbjct: 165 NQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNS 224

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE------------- 440
           G+ ++A++LL  M+   + PD IT+N L++   K G   D  +L +E             
Sbjct: 225 GRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTY 284

Query: 441 -------------------------KGLVSDYACYTSLVSKSSKYRQ 462
                                    KG   D   YTSL++   K ++
Sbjct: 285 TSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKK 331



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 64/108 (59%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  +NVL+H LC  GK++ A MVF +  KR +    +++  +I G CKA  + + 
Sbjct: 419 GVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDA 478

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             L   +   G++P+V TY+ +I+GL +E  + +A +L  +M E G++
Sbjct: 479 LNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 195/379 (51%), Gaps = 37/379 (9%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  L+++D     G+ P V+ +N++++ LCK G++++A+ + ++   RG      +FNT
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI   C    L+E   L   +   G+ PDVYT++ LIN LCK      A  L  EM   G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEAR 260
            TP++V + TLID  C  G++  A D+                             +EA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++ D+M   G++ + IT+  L+DG CK+  ++ A ++  +MI  G++ +N+ + ++++ +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+ G + +A  +L  M   G + D  TY  +I+  CK G T+   ++L+ MR  G  P  
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP--EDFDKL- 437
           + YN ++  L +   +++A  L   M ++G  PD +TY I+  G C+ G P  E FD + 
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFML 661

Query: 438 -QSEKGLVSDYACYTSLVS 455
              +KG + +++ +  L  
Sbjct: 662 EMVDKGFIPEFSSFRMLAE 680



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 7/302 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY FN+L++ LCK G    A  +F+E    G     V++NTLI+  C    L + 
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME +G      TY+ +I+GLCK+ R+++AE +  +M  +G++ N + F TLIDG
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ +ID      +A +++++M + GL P+ ITY  +L  +CK+GD++ A DI + M  
Sbjct: 506 LCKDKKID------DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G E+D V +  LI+G C+ G+   A ++LR M   G++P    Y  V+    +  + + 
Sbjct: 560 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRD 619

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-QLKNANMLLDTMLDLGVVPDDITYNILL 422
              L +EM   G  P   TY  +  GLC+ G  +K A   +  M+D G +P+  ++ +L 
Sbjct: 620 ALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLA 679

Query: 423 EG 424
           EG
Sbjct: 680 EG 681



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 174/341 (51%), Gaps = 9/341 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+   G  P V  FN LM  LC+  +++ A ++ +E   RG+     +F TL+ G  +
Sbjct: 169 YSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVE 228

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +++   R+K+ M   G      T + LING CK  R++DA   + +    G  P+ + 
Sbjct: 229 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQIT 288

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T ++G C+N  +        A K++D M   G +PD  TY I+++  CK G LE A  
Sbjct: 289 YNTFVNGLCQNDHVG------HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I  +M+ RG   D   F  LI+  C G ++ EA  + R++   G+ PD  T+ ++I+  C
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 402

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD     RL +EM++ G  P   TYN L++ LC  G+L  A  LL  M   G     I
Sbjct: 403 KVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTI 462

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           TYN +++G CK    E+ +++  +   +G+  +   + +L+
Sbjct: 463 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 503



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 170/342 (49%), Gaps = 29/342 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G S +    NVL++  CK G+++DA     +    G     +++NT +NG C+  +
Sbjct: 242 MLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDH 301

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +    ++  VM   G  PDV+TY+ ++N LCK  +L++A+ +L++M +RG  P+   F T
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LI   C   R++ A                             GD   A ++ +EM  +G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             PD++TY  L+D  C  G L  ALD+ K+M   G     + +  +I G C+  ++ EAE
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  +M   G+  +  T+  +ID  CK+      F L+ +M S+G  P   TYN+++   
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           CK G +K A  +L+TM   G   D +TY  L+ G CK G  +
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 153/296 (51%), Gaps = 7/296 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +   P + L  + E+ + G +P    +N L+  LC  GK+  A  +  +    G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + +++NT+I+G CK   ++E   +   M+  G+  +  T++ LI+GLCK+ ++DDA 
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 516

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+++M   GL PN++ + +++  +CK       GD+K+A  I++ M  NG   D +TY 
Sbjct: 517 ELINQMISEGLQPNNITYNSILTHYCKQ------GDIKKAADILETMTANGFEVDVVTYG 570

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G CK G  + AL + + M  +G+     A+  ++    R   + +A  + REM +V
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 340 GLKPDDATYTMVIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           G  PD  TY +V    C+  G  K  F  + EM   G +P   ++  L  GL   G
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 174/340 (51%), Gaps = 11/340 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++P   V+  ++ KL   G +   +++  E  + G        ++ ++ +   +  D+  
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 185 RL--KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            L    +    G++ D   Y+ L+N L + +++   E +  EM  RG+ P+ V F TL+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C+      A  ++ A  +++EM + G+ PD+ T+T L+ GF +EG +E+AL ++  M+
Sbjct: 190 ALCR------AHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARML 243

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + G     V    LI+G+C+ G+V +A   +++ +  G +PD  TY   ++  C+N    
Sbjct: 244 EMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVG 303

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +++  M  +GH P V TYN ++N LCK+GQL+ A  +L+ M+D G +PD  T+N L+
Sbjct: 304 HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSK 459
              C     E   D  +  + KG+  D   +  L++   K
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 18/201 (8%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           ++T++  L   K    A +L++ ++S+ G+  +   + SIL    TH            Y
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISE-GLQPNNITYNSIL----TH------------Y 541

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
              G +  A      +  + F +       LI+ + +     V L     +   G  P+ 
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN-LDEGFRLKS 188
             +N ++  L +   I+DA  +F E  + G    A+++  +  G C+    + E F    
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFML 661

Query: 189 VMEGSGMRPDVYTYSALINGL 209
            M   G  P+  ++  L  GL
Sbjct: 662 EMVDKGFIPEFSSFRMLAEGL 682


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G++P +  ++ ++  LCK G+++DA  +F+E        TA+++N+LI G+C+A 
Sbjct: 245 EVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAG 301

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++DE  RL   M      PDV TY+ L++  CK  RLDDA  L  +M    L+P+ V FT
Sbjct: 302 DMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFT 361

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +L+DG C  GR      M++A ++++E+   G  P   TY  ++DG+CK   +  A ++ 
Sbjct: 362 SLVDGLCGEGR------MEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELV 415

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG--LKPDDATYTMVIDCFC 356
            +   RG   + V +  L++G CR G+  +A + L ++   G       A Y +++D  C
Sbjct: 416 ADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALC 475

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           ++G T    +  +EM   G++PA  T+  ++  LCK  Q + A+ LL+ M+  G  P   
Sbjct: 476 RDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPG 535

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
           T + ++  +C+ G  +  D+L SE  L +D
Sbjct: 536 TCDAVVSAYCRAGMIQKADELASELRLYTD 565



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 177/335 (52%), Gaps = 15/335 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            LG Y ++ D  + P    +  L+H L K G+++DA  V  E           +   ++ 
Sbjct: 134 ALGVYRQMND-AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQ 192

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLT 231
             C    +D+   L   M   GM  +  TYSAL++GLCK  RLD+A  LLL E+  RG T
Sbjct: 193 SLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFT 252

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V ++T+IDG CK GR      +++A  I +EM      P  ITY  L+ G+C+ GD+
Sbjct: 253 PDIVTYSTVIDGLCKAGR------LRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDM 303

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A+ +  +M+      D + +T L+S FC+ G++ +A  + ++M+   L PD  T+T +
Sbjct: 304 DEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSL 363

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +D  C  G  +    LL+E+   G  P + TYN +++G CK  Q++ A  L+      G 
Sbjct: 364 VDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF 423

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKG 442
           VP+ +TYNIL+ G C+ G  +      D+L SE G
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGG 458



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 182/409 (44%), Gaps = 81/409 (19%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EI D G SP     N ++ +LC       A  +FD+  + G       +N LI+  CKA+
Sbjct: 36  EIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKAR 94

Query: 179 NLDEGFRLKSVMEGSGMR----------------------------------PDVYTYSA 204
            LDE   L   M+  GM                                   PD  TY+ 
Sbjct: 95  LLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTK 154

Query: 205 LINGLCKENRLDDAELLLHEMCE-----------------------------------RG 229
           L++GL K  RL DA  +L EM                                     RG
Sbjct: 155 LVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRG 214

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           +  N + ++ L+DG CK  R+D A  +     ++ E+   G  PD +TY+ ++DG CK G
Sbjct: 215 MAANAITYSALVDGLCKCERLDEAVAL-----LLGEVTRRGFTPDIVTYSTVIDGLCKAG 269

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            L  A+DI +EM         + + +LI G+CR G + EA R+L +M+     PD  TYT
Sbjct: 270 RLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYT 326

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            ++  FCK G     + L ++M ++   P V T+ +L++GLC  G++++A  LL+ +   
Sbjct: 327 TLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 386

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G  P   TYN +++G+CK       ++L ++   +G V +   Y  LV+
Sbjct: 387 GCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVA 435



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 173/369 (46%), Gaps = 39/369 (10%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKD-AQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +LD GY      F V++  L    K++    ++ DE   RGL    V  NT++   C A+
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +      L   M   G   +  TY  LI+ LCK   LD+A  LL +M  RG+ P  ++  
Sbjct: 61  DTTTAMALFDKMAELGAV-NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 239 TLIDGHCKNGR----------------------------IDMAGDMKEARKIVDEMCTNG 270
            +I G C+ GR                            +  AG +++A +++ EM +  
Sbjct: 120 VVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSAR 179

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA- 329
             PD  T T+++   C    ++ A ++ +EM+ RG+  + + ++AL+ G C+  ++ EA 
Sbjct: 180 HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAV 239

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +L E+ + G  PD  TY+ VID  CK G  +    + +EM      P   TYN+L+ G
Sbjct: 240 ALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSC---APTAITYNSLIGG 296

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVS 445
            C+ G +  A  LL  M+D    PD ITY  L+   CK G  +D    F ++ + K L  
Sbjct: 297 YCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANK-LSP 355

Query: 446 DYACYTSLV 454
           D   +TSLV
Sbjct: 356 DVVTFTSLV 364


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 195/379 (51%), Gaps = 37/379 (9%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  L+++D     G+ P V+ +N++++ LCK G++++A+ + ++   RG      +FNT
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI   C    L+E   L   +   G+ PDVYT++ LIN LCK      A  L  EM   G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEAR 260
            TP++V + TLID  C  G++  A D+                             +EA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++ D+M   G++ + IT+  L+DG CK+  ++ A ++  +MI  G++ +N+ + ++++ +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+ G + +A  +L  M   G + D  TY  +I+  CK G T+   ++L+ MR  G  P  
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP--EDFDKL- 437
           + YN ++  L +   +++A  L   M ++G  PD +TY I+  G C+ G P  E FD + 
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFML 661

Query: 438 -QSEKGLVSDYACYTSLVS 455
              +KG + +++ +  L  
Sbjct: 662 EMVDKGFIPEFSSFRMLAE 680



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 7/302 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY FN+L++ LCK G    A  +F+E    G     V++NTLI+  C    L + 
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME +G      TY+ +I+GLCK+ R+++AE +  +M  +G++ N + F TLIDG
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ +ID      +A +++++M + GL P+ ITY  +L  +CK+GD++ A DI + M  
Sbjct: 506 LCKDKKID------DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G E+D V +  LI+G C+ G+   A ++LR M   G++P    Y  V+    +  + + 
Sbjct: 560 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRD 619

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-QLKNANMLLDTMLDLGVVPDDITYNILL 422
              L +EM   G  P   TY  +  GLC+ G  +K A   +  M+D G +P+  ++ +L 
Sbjct: 620 ALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLA 679

Query: 423 EG 424
           EG
Sbjct: 680 EG 681



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 174/342 (50%), Gaps = 11/342 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+   G  P V  FN LM  LC+  +++ A ++ +E   RG+     +F TL+ G  +
Sbjct: 169 YSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVE 228

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +++   R+K+ M   G      T + LING CK  R++DA   + +    G  P+ + 
Sbjct: 229 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQIT 288

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T ++G C+N  +        A K++D M   G +PD  TY I+++  CK G LE A  
Sbjct: 289 YNTFVNGLCQNDHVG------HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I  +M+ RG   D   F  LI+  C G ++ EA  + R++   G+ PD  T+ ++I+  C
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 402

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD     RL +EM++ G  P   TYN L++ LC  G+L  A  LL  M   G     I
Sbjct: 403 KVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTI 462

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           TYN +++G CK    E+    FD++  + G+  +   + +L+
Sbjct: 463 TYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLI 503



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 170/342 (49%), Gaps = 29/342 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G S +    NVL++  CK G+++DA     +    G     +++NT +NG C+  +
Sbjct: 242 MLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDH 301

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +    ++  VM   G  PDV+TY+ ++N LCK  +L++A+ +L++M +RG  P+   F T
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LI   C   R++ A                             GD   A ++ +EM  +G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             PD++TY  L+D  C  G L  ALD+ K+M   G     + +  +I G C+  ++ EAE
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  +M   G+  +  T+  +ID  CK+      F L+ +M S+G  P   TYN+++   
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           CK G +K A  +L+TM   G   D +TY  L+ G CK G  +
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 153/296 (51%), Gaps = 7/296 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +   P + L  + E+ + G +P    +N L+  LC  GK+  A  +  +    G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + +++NT+I+G CK   ++E   +   M+  G+  +  T++ LI+GLCK+ ++DDA 
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 516

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+++M   GL PN++ + +++  +CK       GD+K+A  I++ M  NG   D +TY 
Sbjct: 517 ELINQMISEGLQPNNITYNSILTHYCKQ------GDIKKAADILETMTANGFEVDVVTYG 570

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G CK G  + AL + + M  +G+     A+  ++    R   + +A  + REM +V
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 340 GLKPDDATYTMVIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           G  PD  TY +V    C+  G  K  F  + EM   G +P   ++  L  GL   G
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 174/340 (51%), Gaps = 11/340 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++P   V+  ++ KL   G +   +++  E  + G        ++ ++ +   +  D+  
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 185 RL--KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            L    +    G++ D   Y+ L+N L + +++   E +  EM  RG+ P+ V F TL+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C+      A  ++ A  +++EM + G+ PD+ T+T L+ GF +EG +E+AL ++  M+
Sbjct: 190 ALCR------AHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARML 243

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + G     V    LI+G+C+ G+V +A   +++ +  G +PD  TY   ++  C+N    
Sbjct: 244 EMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVG 303

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +++  M  +GH P V TYN ++N LCK+GQL+ A  +L+ M+D G +PD  T+N L+
Sbjct: 304 HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSK 459
              C     E   D  +  + KG+  D   +  L++   K
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 18/201 (8%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           ++T++  L   K    A +L++ ++S+ G+  +   + SIL    TH            Y
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISE-GLQPNNITYNSIL----TH------------Y 541

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
              G +  A      +  + F +       LI+ + +     V L     +   G  P+ 
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN-LDEGFRLKS 188
             +N ++  L +   I+DA  +F E  + G    A+++  +  G C+    + E F    
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFML 661

Query: 189 VMEGSGMRPDVYTYSALINGL 209
            M   G  P+  ++  L  GL
Sbjct: 662 EMVDKGFIPEFSSFRMLAEGL 682


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 181/341 (53%), Gaps = 11/341 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+ + G  P+V  +N ++H L + G+I+ AQ  F E    GL    +++N+L+NG+CKA
Sbjct: 326 LEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKA 385

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            N  E   L   +  +G+ P V TY+ LI+G C+   L++A  L  EM E+G  P+   +
Sbjct: 386 GNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTY 445

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T L+ G      + M       R+  DEM + GL PD   Y   +      GD+  +  +
Sbjct: 446 TILMKGSHNVCSLAMT------REFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQL 499

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           R+ ++  GI  D V +  LI G C+ G + +AE ++ +M+  GL+PD  TYT +I   C+
Sbjct: 500 REVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCE 559

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +   +   +M SDG  P+  TY  +++  C+ G L +A      ML+ GV P++IT
Sbjct: 560 RGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEIT 619

Query: 418 YNILLEGHCKHGNPE----DFDKLQSEKGLVSDYACYTSLV 454
           YN+L+   C+ G  +     F ++  E+GLV +   YT L+
Sbjct: 620 YNVLIHALCRMGRTQLAYRHFYEML-ERGLVPNKYTYTLLI 659



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 166/351 (47%), Gaps = 42/351 (11%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH------------- 161
             + E+L  G  PS+  +N L+    KEG+     M+  E   RG               
Sbjct: 217 AVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIA 276

Query: 162 -----------------------ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
                                  A++ ++N LI G      + +   L+  ME  G+ P 
Sbjct: 277 GLARKGYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPT 336

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           V TY+A+I+GL +  +++ A+    EM   GL P+ + + +L++G+CK      AG+ KE
Sbjct: 337 VVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCK------AGNQKE 390

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A  +  ++   GL P  +TY IL+DG+C+ GDLE A  +++EM+++G   D   +T L+ 
Sbjct: 391 ALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMK 450

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G      +        EML  GL+PD   Y   I      GD    F+L + +  +G   
Sbjct: 451 GSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISS 510

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
              TYN L++GLCK G LK+A  L+  M+  G+ PD ITY  L+  HC+ G
Sbjct: 511 DTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERG 561



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 139/274 (50%), Gaps = 14/274 (5%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+ PDV   + ++  L    R DD   +  EM + G+ P+ V + TL+D   K GR
Sbjct: 187 MASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGR 246

Query: 250 ---IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              IDM     EAR        +   P+ +TY +++ G  ++G LE A ++ +EM +   
Sbjct: 247 KDKIDMLLKEMEARG-------SSCLPNDVTYNVVIAGLARKGYLEEAAELVEEM-RLSK 298

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +  +  +  LI+G    G V + + +  EM   G+ P   TY  +I    ++G  +    
Sbjct: 299 KASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQA 358

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
              EMR+ G LP V TYN+L+NG CK G  K A +L   +   G+ P  +TYNIL++G+C
Sbjct: 359 KFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYC 418

Query: 427 KHGNPEDFDKLQS---EKGLVSDYACYTSLVSKS 457
           + G+ E+  +L+    E+G + D   YT L+  S
Sbjct: 419 RLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGS 452



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+ +++  G  PS   + V++H  C+ G +  A   F +  + G+    +++N LI+  C
Sbjct: 569 FFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALC 628

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           +       +R    M   G+ P+ YTY+ LI+G
Sbjct: 629 RMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            +EM S G  P V+  N ++  L    +  + + +   ML LG+ P  +TYN LL+   K
Sbjct: 184 FREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSK 243

Query: 428 HGNPEDFDKLQSE 440
            G  +  D L  E
Sbjct: 244 EGRKDKIDMLLKE 256


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 192/387 (49%), Gaps = 13/387 (3%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           D+G +DDAI   R + K       +    +I  + R     + +G Y ++L  G  P+  
Sbjct: 314 DIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTV 373

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +N L+++LC EG+   A  +FD     G  A A ++N +I G     ++++   + + M
Sbjct: 374 TYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKM 433

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
              G  P V TY+ LI    K   L++A   L+ M E    P++  +  LI G CK G++
Sbjct: 434 LKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKL 493

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D       A     EM   G++P++ TYT ++DG+CKEG ++ AL + + M + G     
Sbjct: 494 D------SATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASI 547

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             + A+ISG  +G +  EAE+   +M + GL+P+  TYT +I+  CKN  T   F++  E
Sbjct: 548 ETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHE 607

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M     LP   TY +L+ GLC+ G++  A  L +     G  P   TY+ L+ G C+ G 
Sbjct: 608 MEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN----GCEPTIDTYSTLVSGLCREGR 663

Query: 431 PEDFDKL---QSEKGLVSDYACYTSLV 454
             +  +L     EKGL      Y SL+
Sbjct: 664 SNEASQLVENMKEKGLSPSMEIYCSLL 690



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 191/399 (47%), Gaps = 46/399 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+ ++ + ++ T     Y +I   G  PS+  FN +++ LCK+GK+++A +VF++  +  
Sbjct: 168 LLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFD 227

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   A ++ +LI GHC+ + LD+ F +   M   G  P+  TYS LINGLC E R+ +A 
Sbjct: 228 LCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAM 287

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L EM E+G+ P    +T  I   C  GR+D      +A  +V  M   G +P   TYT
Sbjct: 288 DMLEEMTEKGIEPTVYTYTVPISSLCDIGRVD------DAINLVRSMGKKGCSPSVQTYT 341

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK-------------- 325
            ++ G  + G +E A+ +  +M+K G+  + V + ALI+  C  G+              
Sbjct: 342 AIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGH 401

Query: 326 ---------------------VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                                + +A  +  +MLK G  P   TY  +I    K G     
Sbjct: 402 GTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNA 461

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            R L  M+     P   TY  L++G CK G+L +A      ML  G+ P+  TY  +++G
Sbjct: 462 TRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDG 521

Query: 425 HCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           +CK G  +     F++++ E G  +    Y +++S  SK
Sbjct: 522 YCKEGKIDVALSLFERME-ENGCSASIETYNAIISGLSK 559



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 175/363 (48%), Gaps = 32/363 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+   ++ L++ LC EG+I +A  + +E  ++G+  T  ++   I+  C    +D+ 
Sbjct: 262 GCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDA 321

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G  P V TY+A+I+GL +  +++ A  + H+M + GL PN V +  LI+ 
Sbjct: 322 INLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINE 381

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            C  GR  +A                              D+++A  + ++M  +G +P 
Sbjct: 382 LCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPT 441

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TY  L+    K G L +A      M +   E D   +  LISGFC+GGK+  A     
Sbjct: 442 VVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFY 501

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EMLK G+ P+  TYT +ID +CK G       L + M  +G   ++ETYNA+++GL K  
Sbjct: 502 EMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGN 561

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           +   A      M + G+ P+ ITY  L+ G CK+       K+  E   K  + +   YT
Sbjct: 562 RFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYT 621

Query: 452 SLV 454
           SL+
Sbjct: 622 SLI 624



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 166/331 (50%), Gaps = 9/331 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           ++Y FN L+ +L K   +  AQ V+ +    G+  + ++FNT+IN  CK   + E   + 
Sbjct: 161 TLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVF 220

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           + +    + PD +TY++LI G C+  +LD A  +   M + G  PN V ++TLI+G C  
Sbjct: 221 NKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNE 280

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GRI  A DM      ++EM   G+ P   TYT+ +   C  G ++ A+++ + M K+G  
Sbjct: 281 GRIGEAMDM------LEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCS 334

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
                +TA+ISG  R GK+  A  M  +MLK GL P+  TY  +I+  C  G      ++
Sbjct: 335 PSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKI 394

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M   G L   +TYN ++ GL     ++ A ++ + ML  G  P  +TYN L+  + K
Sbjct: 395 FDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLK 454

Query: 428 HG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
            G   N   F  +  E     D   Y  L+S
Sbjct: 455 RGYLNNATRFLYMMKESNCEPDERTYCELIS 485



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 25/358 (6%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + L++  +  G+L++A +   ++++       R    LI    +         F+ E+L 
Sbjct: 446 NTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLK 505

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G SP+ + +  ++   CKEGKI  A  +F+   + G  A+  ++N +I+G  K     E
Sbjct: 506 CGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSE 565

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +  + M   G++P+  TY++LINGLCK    + A  + HEM ++   PN   +T+LI 
Sbjct: 566 AEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIY 625

Query: 243 GHCKNGRIDMA-------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           G C+ G++D A                         G   EA ++V+ M   GL+P    
Sbjct: 626 GLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEI 685

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  LL   CK   ++ AL+I   M  +G +     +  LI   C   +  EA  + + +L
Sbjct: 686 YCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLL 745

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           K     D   +T+++D   + GD+    + L  M S    P++ TY  L   L K G+
Sbjct: 746 KKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGK 803



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 141/332 (42%), Gaps = 34/332 (10%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           + S+ S F  +L+  G         A++  Y   G +D A+  F  + ++          
Sbjct: 493 LDSATSFFYEMLKC-GISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYN 551

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            +I  + + N  +    F  ++ + G  P+   +  L++ LCK      A  +F E  K+
Sbjct: 552 AIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKK 611

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                A ++ +LI G C+   +D   RL      +G  P + TYS L++GLC+E R ++A
Sbjct: 612 NCLPNAHTYTSLIYGLCQEGKVDAAERLTE----NGCEPTIDTYSTLVSGLCREGRSNEA 667

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
             L+  M E+GL+P+  I+ +L+  HCK+ ++D A ++                      
Sbjct: 668 SQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICA 727

Query: 257 -------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                  +EA  I   +     N D I +T+L+DG  +EGD +  +     M  R     
Sbjct: 728 LCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPS 787

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
              +  L     + GK +  +++   + +V L
Sbjct: 788 LHTYIILARELSKVGKSIGTDQIGNRLREVSL 819


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 208/416 (50%), Gaps = 15/416 (3%)

Query: 47  ASILETRGTHLPGLVLDALMIVYVD----LGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A +L       PG +      V VD     G +DDA +    + +H  ++ A     L+D
Sbjct: 117 AELLRKALASCPGCITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLD 176

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              R            E+   G  P+V  + +L+  L   G I   + VFDE  ++ +  
Sbjct: 177 TYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAG 236

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
               ++ +IN +C+A N+     +     G+G+ P+  TY ALING CK  +++ AE+LL
Sbjct: 237 DVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLL 296

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M  RG+  N +IF T+IDG+C++G +D A ++K    +++ M   G+  D  TY  L 
Sbjct: 297 TDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIK---AVMERM---GIQLDVYTYNTLA 350

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G C+   +E A  +   M + G+E + V++T LIS   + G +VEA R+ R+M   G +
Sbjct: 351 CGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSR 410

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P   TY ++ID + K+G  +   R  KEM   G +P V TY AL++G C +G++  A  L
Sbjct: 411 PSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRL 470

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            + M   G  P+ + Y  L+ G  K G  E+    +D + +  GL  D   Y+ LV
Sbjct: 471 FEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLA-AGLTPDDTLYSMLV 525



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 17/215 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
            +L ++ Y+T+   L        A+ LLH I+++ G+ S+   + +++            
Sbjct: 339 IQLDVYTYNTLACGLCRVNRMEDAKKLLH-IMTENGVESNYVSYTTLIS----------- 386

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
                ++   G + +A + FR +     R        +ID  +++        F  E+  
Sbjct: 387 -----IHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEK 441

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P VY +  L+H  C  GK+  A  +F+E  +RG     V++  LI+G  K    +E
Sbjct: 442 KGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEE 501

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
            F+    M  +G+ PD   YS L+  L  + R D+
Sbjct: 502 AFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDE 536


>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/426 (30%), Positives = 215/426 (50%), Gaps = 13/426 (3%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRG--THLPGLVLDA 64
           H      H LV  +++  A+ +L HL  ++K  GS+  LF  +++T    +  P  V D 
Sbjct: 55  HILGITTHVLVRARLYGYAKSILKHL--AQKNSGSNF-LFGVLMDTYPLCSSNPA-VFDL 110

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+ VY+  G +  A+  F  +    F+     C  ++  M++     +   F+ ++L   
Sbjct: 111 LIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSR 170

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+V  FN+L+  LC +GK+K A  +     + G   T VS+NTL++  CK        
Sbjct: 171 VCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFAL 230

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   ME  G++ DV TY+  I+ LC+ +R     L+L +M  + +TPN+V + TLI+G 
Sbjct: 231 VLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGF 290

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+I +      A ++ +EM    L+P+ ITY IL++G+C  G+ E AL +   M   
Sbjct: 291 VKEGKIGV------ATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEAN 344

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  + V    L++G  +  K   A  +L          +  ++T++ID  C+NG     
Sbjct: 345 DVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLLDEA 404

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F+LL EM  DG  P + T++ L+NG CK G L  A  ++  +   G VP+++ ++ L+  
Sbjct: 405 FQLLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLIYN 464

Query: 425 HCKHGN 430
            CK GN
Sbjct: 465 SCKVGN 470



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 181/368 (49%), Gaps = 44/368 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+   +N L++   KEGKI  A  VF+E  +  L    +++N LING+C   N +E  R
Sbjct: 277 TPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALR 336

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L  VME + +RP+  T   L+NGL K  + D A  +L        + N +  T +IDG C
Sbjct: 337 LLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLC 396

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG +D      EA +++ EMC +G+ PD IT+++L++GFCK G+L  A ++  ++ + G
Sbjct: 397 RNGLLD------EAFQLLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREG 450

Query: 306 IELDNVAFTALI-----------------------------------SGFCRGGKVVEAE 330
              +NV F+ LI                                   +  C  GK+VEAE
Sbjct: 451 FVPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAE 510

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             L  + ++GL P+  T+  +I+ +   GD    F +  +M S GH P+  TY +L+  L
Sbjct: 511 EFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVL 570

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
           CK      A  LL  +  + +  D I+YN L+    K GN  +  +L  E     ++ D 
Sbjct: 571 CKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDS 630

Query: 448 ACYTSLVS 455
             YT ++S
Sbjct: 631 YTYTCILS 638



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 45/360 (12%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           + FY  +   G +   +  N L+  LC+ GK+ +A+       + GL   +V+F+ +ING
Sbjct: 475 MKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIING 534

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +    +    F +   M   G  P  +TY +L+  LCK     +A  LL ++    L  +
Sbjct: 535 YANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVD 594

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL-- 291
            + + TLI        I  +G++ EA ++ +EM  N + PD  TYT +L G  +EG L  
Sbjct: 595 TISYNTLIV------EISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVC 648

Query: 292 ----------------------------------ESALDIRKEMIKRGIELDNVAFTALI 317
                                             ++AL + KEM ++G+ LD +A  ++ 
Sbjct: 649 AFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSIT 708

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G+ R GKV  A  ++ +     + P+  T+ +++  + +  D  + F+L   MR  G  
Sbjct: 709 DGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFF 768

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P   TY++L+ GLC HG L+    +L   +      DD+T+N+L+   C+     D DK+
Sbjct: 769 PNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRKCCE---INDLDKV 825



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 32/397 (8%)

Query: 83   RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
            RL++K    + +    C ID + +       L  + E+ + G S  +   N +     + 
Sbjct: 655  RLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRM 714

Query: 143  GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
            GK+  A  +  +   + +     +FN L++G+ + +++   F+L ++M  SG  P+  TY
Sbjct: 715  GKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTY 774

Query: 203  SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM------ 256
             +LI GLC    L+    +L        T +D+ F  LI   C+   +D   D+      
Sbjct: 775  HSLILGLCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEV 834

Query: 257  ------KEARKIVD-----------------EMCTNGLNPDKITYTILLDGFCKEGDLES 293
                  K+ +K V                  EM   G  P    Y  ++   C+ GD++ 
Sbjct: 835  FRVSLDKDTQKAVTDVLVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQG 894

Query: 294  ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
            A  ++ +M+  GI LD+ A  A++ G    GK+ EA  +L+ ML++   P  +T+T ++ 
Sbjct: 895  AFKLKDQMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTLMH 954

Query: 354  CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             FCK  + K    L   M        +  YN L++  C +G +  A    + +   G++P
Sbjct: 955  VFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLP 1014

Query: 414  DDITYNILLEG-HCKH--GNPEDFDKLQSEKGLVSDY 447
            +  TY +L+     KH     E   K  +++GLVS Y
Sbjct: 1015 NMTTYRVLVSAISTKHYVSRGEIVLKDLNDRGLVSGY 1051



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 7/265 (2%)

Query: 174 HCKAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           H   KN    F    +M+   +   +   +  LI    ++  +  A      M  RG  P
Sbjct: 79  HLAQKNSGSNFLFGVLMDTYPLCSSNPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKP 138

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +      ++    KN R  +            +M T+ + P+  ++ IL+   C +G L+
Sbjct: 139 SVYTCNMIMASMVKNCRAHLVW------XFFKQMLTSRVCPNVSSFNILISVLCVQGKLK 192

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A++I   M + G     V++  L+S  C+ G+   A  ++  M   G++ D  TY M I
Sbjct: 193 KAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFI 252

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D  C+N  +  G+ +LK+MR+    P   +YN L+NG  K G++  A  + + M++L + 
Sbjct: 253 DSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLS 312

Query: 413 PDDITYNILLEGHCKHGNPEDFDKL 437
           P+ ITYNIL+ G+C +GN E+  +L
Sbjct: 313 PNLITYNILINGYCINGNFEEALRL 337


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 177/326 (54%), Gaps = 10/326 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G+ P +   N L++ LC  GK  +A ++ D+  + G    AV++  ++N  CK+  
Sbjct: 282 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 341

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 L   ME   ++ D   YS +I+GLCK   LD+A  L +EM  +G+T N + +  
Sbjct: 342 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 401

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C  GR D      +  K++ +M    +NP+ +T+++L+D F KEG L  A ++ K
Sbjct: 402 LIGGFCNAGRWD------DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 455

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EMI RGI  D + +T+LI GFC+   + +A +M+  M+  G  P+  T+ ++I+ +CK  
Sbjct: 456 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 515

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               G  L ++M   G +    TYN L+ G C+ G+L  A  L   M+   V P+ +TY 
Sbjct: 516 RIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYK 575

Query: 420 ILLEGHCKHGNPED----FDKLQSEK 441
           ILL+G C +G  E     F+K++  K
Sbjct: 576 ILLDGLCDNGESEKALEIFEKIEKSK 601



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 174/344 (50%), Gaps = 41/344 (11%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +++++  LCK G + +A  +F+E   +G+    +++N LI G C A   D+G +L   M 
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
              + P+V T+S LI+   KE +L +AE L  EM  RG+ P+ + +T+LIDG CK   +D
Sbjct: 424 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A  M      VD M + G +P+  T+ IL++G+CK   ++  L++ ++M  RG+  D V
Sbjct: 484 KANQM------VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 537

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI GFC  GK+  A+ + +EM+   + P+  TY +++D  C NG+++    + +++
Sbjct: 538 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 597

Query: 372 RSD-----------------------------------GHLPAVETYNALMNGLCKHGQL 396
                                                 G  P V+TYN ++ GLCK G L
Sbjct: 598 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 657

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             A +L   M + G  PD  TYNIL+  H   G+     KL  E
Sbjct: 658 SEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEE 701



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 168/311 (54%), Gaps = 6/311 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+  GY P+   F+ L++ LC EG++ +A  + D   + G     ++ NTL+NG C + 
Sbjct: 246 KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSG 305

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              E   L   M   G +P+  TY  ++N +CK  +   A  LL +M ER +  + V ++
Sbjct: 306 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 365

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG CK+G +D       A  + +EM   G+  + ITY IL+ GFC  G  +    + 
Sbjct: 366 IIIDGLCKHGSLD------NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 419

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++MIKR I  + V F+ LI  F + GK+ EAE + +EM+  G+ PD  TYT +ID FCK 
Sbjct: 420 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 479

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                  +++  M S G  P + T+N L+NG CK  ++ +   L   M   GVV D +TY
Sbjct: 480 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 539

Query: 419 NILLEGHCKHG 429
           N L++G C+ G
Sbjct: 540 NTLIQGFCELG 550



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 203/390 (52%), Gaps = 23/390 (5%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLID------RMMRTNLPTVTLGFYLEILDYGYSPSV 129
           DDAI  FR +      I +R    +ID       + +T    + L    ++   G + ++
Sbjct: 168 DDAIDLFRDM------IHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNL 221

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y  +++++  C+  K+  A     +  K G     ++F+TLING C    + E   L   
Sbjct: 222 YTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDR 281

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G +PD+ T + L+NGLC   +  +A LL+ +M E G  PN V +  +++  CK+G+
Sbjct: 282 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 341

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             +A  M+  RK    M    +  D + Y+I++DG CK G L++A ++  EM  +GI  +
Sbjct: 342 TALA--MELLRK----MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN 395

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            + +  LI GFC  G+  +  ++LR+M+K  + P+  T++++ID F K G  +    L K
Sbjct: 396 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 455

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G  P   TY +L++G CK   L  AN ++D M+  G  P+  T+NIL+ G+CK  
Sbjct: 456 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 515

Query: 430 NPED----FDKLQSEKGLVSDYACYTSLVS 455
             +D    F K+ S +G+V+D   Y +L+ 
Sbjct: 516 RIDDGLELFRKM-SLRGVVADTVTYNTLIQ 544



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 162/298 (54%), Gaps = 6/298 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+V  F+VL+    KEGK+++A+ +  E   RG+    +++ +LI+G CK  +LD+  +
Sbjct: 428 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 487

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M   G  P++ T++ LING CK NR+DD   L  +M  RG+  + V + TLI G C
Sbjct: 488 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 547

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G++++A      +++  EM +  + P+ +TY ILLDG C  G+ E AL+I +++ K  
Sbjct: 548 ELGKLNVA------KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 601

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +ELD   +  +I G C   KV +A  +   +   G+KP   TY ++I   CK G      
Sbjct: 602 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 661

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            L ++M  DGH P   TYN L+      G    +  L++ +   G   D  T  ++++
Sbjct: 662 LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 719



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           + DDA  L  +M      P  + F+ L     K  + D+         +  +M   G+  
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLV------LALCKQMELKGIAH 219

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           +  T +I+++ FC+   L  A     ++IK G E + + F+ LI+G C  G+V EA  ++
Sbjct: 220 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 279

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M+++G KPD  T   +++  C +G       L+ +M   G  P   TY  ++N +CK 
Sbjct: 280 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 339

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           GQ   A  LL  M +  +  D + Y+I+++G CKHG+ ++   L +E   KG+ ++   Y
Sbjct: 340 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY 399

Query: 451 TSLV 454
             L+
Sbjct: 400 NILI 403



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N+++  LCK+G + +A+++F +  + G      ++N LI  H    +  + 
Sbjct: 636 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKS 695

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGL 209
            +L   ++  G   D  T   +I+ L
Sbjct: 696 VKLIEELKRCGFSVDASTIKMVIDML 721


>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 219/439 (49%), Gaps = 13/439 (2%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRG--THLPGLVLDA 64
           H      H LV  +++  A+ +L HL  ++K  GS+  LF  +++T    +  P  V D 
Sbjct: 55  HILGITTHVLVKARLYGYAKSILKHL--AQKNSGSNF-LFGVLMDTYPLCSSNPA-VFDL 110

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+ VY+  G +  A+  F  +    F+     C  ++  M++     +   F+ ++L   
Sbjct: 111 LIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWSFFKQMLTSR 170

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+V  FN+L+  LC +GK+K A  +     + G   T VS+NTL++  CK        
Sbjct: 171 VCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFAL 230

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   ME  G++ DV TY+  I+ LC+ +R     L+L +M  + +TPN+V + TLI+G 
Sbjct: 231 VLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGF 290

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G+I +      A ++ +EM    L+P+ ITY IL++G+C  G+ E AL +   M   
Sbjct: 291 VKEGKIGV------ATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVMEAN 344

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  + V    L++G  +  K   A  +L          +  ++T++ID  C+NG     
Sbjct: 345 DVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLLDEA 404

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F+LL EM  DG  P + T++ L+NG CK G +  A  ++  +   G VP+++ ++ L+  
Sbjct: 405 FQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLIYN 464

Query: 425 HCKHGNPEDFDKLQSEKGL 443
            CK GN  +  K  +   L
Sbjct: 465 SCKVGNVYEAMKFYAAMNL 483



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 182/368 (49%), Gaps = 44/368 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+   +N L++   KEGKI  A  VF+E  +  L    +++N LING+C   N +E  R
Sbjct: 277 TPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALR 336

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  VME + +RP+  T   L+NGL K  + D A  +L   C    + N +  T +IDG C
Sbjct: 337 VLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLC 396

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG +D      EA +++ EMC +G++PD IT+++L++GFCK G++  A ++  ++ + G
Sbjct: 397 RNGLLD------EAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREG 450

Query: 306 IELDNVAFTALI-----------------------------------SGFCRGGKVVEAE 330
              +NV F+ LI                                   +  C  GK+VEAE
Sbjct: 451 FVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAE 510

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             L  + ++GL P+  T+  +I+ +   GD    F +   M S GH P+  TY +L+  L
Sbjct: 511 EFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVL 570

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
           CK      A  LL  +  + +  D I+YN L+    K GN  +  +L  E     ++ D 
Sbjct: 571 CKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDS 630

Query: 448 ACYTSLVS 455
             YT ++S
Sbjct: 631 YTYTCILS 638



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 164/361 (45%), Gaps = 45/361 (12%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + FY  +   G +   +  N L+  LC+ GK+ +A+       + GL   +V+F+ +IN
Sbjct: 474 AMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIIN 533

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+    +    F +   M   G  P  +TY +L+  LCK     +A  LL ++    L  
Sbjct: 534 GYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAV 593

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL- 291
           + + + TLI        I  +G++ EA ++ +EM  N + PD  TYT +L G  +EG L 
Sbjct: 594 DTISYNTLIV------EISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLV 647

Query: 292 -----------------------------------ESALDIRKEMIKRGIELDNVAFTAL 316
                                              ++AL + KEM ++G+ LD +A  ++
Sbjct: 648 CAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSI 707

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
             G+ R GKV  A  ++ +     + P+  T+ +++  + +  D  + F+L   MR  G 
Sbjct: 708 TDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGF 767

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P   TY++L+ GLC HG L+    +L   +      DD+T+N+L+   C+     D DK
Sbjct: 768 FPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRKCCE---INDLDK 824

Query: 437 L 437
           +
Sbjct: 825 V 825



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 32/397 (8%)

Query: 83   RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
            RL++K    + +    C ID + +       L  + E+ + G S  +   N +     + 
Sbjct: 655  RLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRM 714

Query: 143  GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
            GK+  A  +  +   + +     +FN L++G+ + +++   F+L ++M  SG  P+  TY
Sbjct: 715  GKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTY 774

Query: 203  SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM------ 256
             +LI GLC    L+    +L        T +D+ F  LI   C+   +D   D+      
Sbjct: 775  HSLILGLCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEV 834

Query: 257  ------KEARKIVD-----------------EMCTNGLNPDKITYTILLDGFCKEGDLES 293
                  K+ +K V                  EM   G  P    Y  ++   C+ GD++ 
Sbjct: 835  FRVSLDKDTQKAVTDVLVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQG 894

Query: 294  ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
            A  ++ +M+  GI LD+ A  A++ G    GK+ EA  +L+ ML++   P  +T+T ++ 
Sbjct: 895  AFKLKDQMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTLMH 954

Query: 354  CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             FCK  + K    L   M        +  YN L++  C +G +  A    + +   G++P
Sbjct: 955  VFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLP 1014

Query: 414  DDITYNILLEG-HCKH--GNPEDFDKLQSEKGLVSDY 447
            +  TY +L+     KH     E   K  +++GLVS Y
Sbjct: 1015 NMTTYRVLVSAISTKHYVSRGEIVLKDLNDRGLVSGY 1051


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 177/326 (54%), Gaps = 10/326 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G+ P +   N L++ LC  GK  +A ++ D+  + G    AV++  ++N  CK+  
Sbjct: 184 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 L   ME   ++ D   YS +I+GLCK   LD+A  L +EM  +G+T N + +  
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C  GR D      +  K++ +M    +NP+ +T+++L+D F KEG L  A ++ K
Sbjct: 304 LIGGFCNAGRWD------DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EMI RGI  D + +T+LI GFC+   + +A +M+  M+  G  P+  T+ ++I+ +CK  
Sbjct: 358 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
               G  L ++M   G +    TYN L+ G C+ G+L  A  L   M+   V P+ +TY 
Sbjct: 418 RIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYK 477

Query: 420 ILLEGHCKHGNPED----FDKLQSEK 441
           ILL+G C +G  E     F+K++  K
Sbjct: 478 ILLDGLCDNGESEKALEIFEKIEKSK 503



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 174/344 (50%), Gaps = 41/344 (11%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +++++  LCK G + +A  +F+E   +G+    +++N LI G C A   D+G +L   M 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
              + P+V T+S LI+   KE +L +AE L  EM  RG+ P+ + +T+LIDG CK   +D
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A  M      VD M + G +P+  T+ IL++G+CK   ++  L++ ++M  RG+  D V
Sbjct: 386 KANQM------VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 439

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI GFC  GK+  A+ + +EM+   + P+  TY +++D  C NG+++    + +++
Sbjct: 440 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499

Query: 372 RSD-----------------------------------GHLPAVETYNALMNGLCKHGQL 396
                                                 G  P V+TYN ++ GLCK G L
Sbjct: 500 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 559

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             A +L   M + G  PD  TYNIL+  H   G+     KL  E
Sbjct: 560 SEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEE 603



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 174/327 (53%), Gaps = 10/327 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+  GY P+   F+ L++ LC EG++ +A  + D   + G     ++ NTL+NG C + 
Sbjct: 148 KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSG 207

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              E   L   M   G +P+  TY  ++N +CK  +   A  LL +M ER +  + V ++
Sbjct: 208 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG CK+G +D       A  + +EM   G+  + ITY IL+ GFC  G  +    + 
Sbjct: 268 IIIDGLCKHGSLD------NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++MIKR I  + V F+ LI  F + GK+ EAE + +EM+  G+ PD  TYT +ID FCK 
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                  +++  M S G  P + T+N L+NG CK  ++ +   L   M   GVV D +TY
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 441

Query: 419 NILLEGHCKHGN----PEDFDKLQSEK 441
           N L++G C+ G      E F ++ S K
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRK 468



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 203/390 (52%), Gaps = 23/390 (5%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLID------RMMRTNLPTVTLGFYLEILDYGYSPSV 129
           DDAI  FR +      I +R    +ID       + +T    + L    ++   G + ++
Sbjct: 70  DDAIDLFRDM------IHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNL 123

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y  +++++  C+  K+  A     +  K G     ++F+TLING C    + E   L   
Sbjct: 124 YTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDR 183

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G +PD+ T + L+NGLC   +  +A LL+ +M E G  PN V +  +++  CK+G+
Sbjct: 184 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
             +A  M+  RK    M    +  D + Y+I++DG CK G L++A ++  EM  +GI  +
Sbjct: 244 TALA--MELLRK----MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN 297

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            + +  LI GFC  G+  +  ++LR+M+K  + P+  T++++ID F K G  +    L K
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM   G  P   TY +L++G CK   L  AN ++D M+  G  P+  T+NIL+ G+CK  
Sbjct: 358 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417

Query: 430 NPED----FDKLQSEKGLVSDYACYTSLVS 455
             +D    F K+ S +G+V+D   Y +L+ 
Sbjct: 418 RIDDGLELFRKM-SLRGVVADTVTYNTLIQ 446



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 162/298 (54%), Gaps = 6/298 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+V  F+VL+    KEGK+++A+ +  E   RG+    +++ +LI+G CK  +LD+  +
Sbjct: 330 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 389

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +M   G  P++ T++ LING CK NR+DD   L  +M  RG+  + V + TLI G C
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G++++A      +++  EM +  + P+ +TY ILLDG C  G+ E AL+I +++ K  
Sbjct: 450 ELGKLNVA------KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +ELD   +  +I G C   KV +A  +   +   G+KP   TY ++I   CK G      
Sbjct: 504 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 563

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            L ++M  DGH P   TYN L+      G    +  L++ +   G   D  T  ++++
Sbjct: 564 LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           + DDA  L  +M      P  + F+ L     K  + D+         +  +M   G+  
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLV------LALCKQMELKGIAH 121

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           +  T +I+++ FC+   L  A     ++IK G E + + F+ LI+G C  G+V EA  ++
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M+++G KPD  T   +++  C +G       L+ +M   G  P   TY  ++N +CK 
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           GQ   A  LL  M +  +  D + Y+I+++G CKHG+ ++   L +E   KG+ ++   Y
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY 301

Query: 451 TSLV 454
             L+
Sbjct: 302 NILI 305



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N+++  LCK+G + +A+++F +  + G      ++N LI  H    +  + 
Sbjct: 538 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKS 597

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGL 209
            +L   ++  G   D  T   +I+ L
Sbjct: 598 VKLIEELKRCGFSVDASTIKMVIDML 623


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 220/430 (51%), Gaps = 31/430 (7%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC---- 99
           + F  IL+T G  +  +V++ L+    D   + +A+    LLR+    +P  GCR     
Sbjct: 105 AAFGLILKT-GWRVDDIVVNQLLKGLCDTKRVGEAMHV--LLRQ----MPEVGCRLGVVS 157

Query: 100 -------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
                  L DR  R       L   ++  D   SP V  +N++++    EG++  A  +F
Sbjct: 158 YNTLLKGLCDRR-RAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF 216

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
            E G   +    V++NT+I+G CKA+ +D    +   M   G++P+  TY+ +I+GLCK 
Sbjct: 217 LEMG---VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKA 273

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
             +D AE +  +M ++G+ P++V + T+IDG CK   +D       A  +  +M   G+ 
Sbjct: 274 QEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVD------RAEGVFQQMIDRGVK 327

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD +TY  ++DG CK   ++ A  + ++MI +G++ DN+ +T +I G C+   V  AE +
Sbjct: 328 PDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGV 387

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            ++M+  G+KP++ TY  +I  +   G  +   + +KEM +    P V TY  L++ LCK
Sbjct: 388 FQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCK 447

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYAC 449
           +G+   A  L D+M+  G+ P    Y I+L G+ K G      D   L    G+  ++  
Sbjct: 448 NGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRI 507

Query: 450 YTSLVSKSSK 459
           + +++   +K
Sbjct: 508 FNTVICAYAK 517



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 223/456 (48%), Gaps = 65/456 (14%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           RL + +Y+T++  L   +   +AR+LLH++V   G  SS S             P +V  
Sbjct: 152 RLGVVSYNTLLKGLCDRRRAEEARELLHMMVD--GQDSSCS-------------PDVVSY 196

Query: 64  ALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
            ++I  + + G +D A   F                                      L+
Sbjct: 197 NIVINGFFNEGQVDKAYSLF--------------------------------------LE 218

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G SP V  +N ++  LCK  ++  A+ VF +  ++G+    V++NT+I+G CKA+ +D 
Sbjct: 219 MGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDM 278

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              +   M   G++P   TY+ +I+GLCK   +D AE +  +M +RG+ P+ V + T+ID
Sbjct: 279 AEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIID 338

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK   ID      +A  +  +M   G+ PD +TYTI++DG CK   ++ A  + ++MI
Sbjct: 339 GLCKAQAID------KAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMI 392

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G++ +N  +  LI G+   G+  E  + ++EM    L+PD  TY +++D  CKNG   
Sbjct: 393 DKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCN 452

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L   M   G  P+V  Y  +++G  K G L   + LL+ M+  G+ P+   +N ++
Sbjct: 453 EARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVI 512

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             + K    ++    F K++ ++GL  +   Y +L+
Sbjct: 513 CAYAKRAMIDEVMHIFIKMK-QQGLSPNVVTYGTLI 547



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 217/433 (50%), Gaps = 23/433 (5%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           +  Y  ++ +L  +   ++AR L   ++ +KG+  S +++  +L   G       +  L+
Sbjct: 435 VFTYGLLLDYLCKNGKCNEARSLFDSMI-RKGIKPSVTIYGIMLHGYGKKGALSEMHDLL 493

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
            + V  G   +        R     I A   R +ID +M           ++++   G S
Sbjct: 494 NLMVANGISPNH-------RIFNTVICAYAKRAMIDEVMH---------IFIKMKQQGLS 537

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  +  L+  LCK G++ DA + F++    G+    V FN+L+ G C     ++   L
Sbjct: 538 PNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEEL 597

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+RPD+  ++ ++  LCKE R+ +A  L+  M   GL P+ + + TLIDGHC 
Sbjct: 598 FLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCF 657

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R+D      EA K++D M + GL P+ ++Y  LL G+CK G +++A  + +EM+++G+
Sbjct: 658 ASRMD------EAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGV 711

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
                 +  +++G  R G+  EA  +   M+K        TY++++D FCKN      F+
Sbjct: 712 TPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFK 771

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + + S      + T+N +++GL K G+ ++A  L   +   G+VP  +TY ++ E   
Sbjct: 772 IFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLI 831

Query: 427 KHGNPEDFDKLQS 439
           + G+ E+ D L S
Sbjct: 832 EEGSLEELDCLFS 844



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 188/400 (47%), Gaps = 35/400 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +        G + +++D G  P    + +++  LCK   +  A+ VF +   +G
Sbjct: 336 IIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKG 395

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     ++N LI+G+      +E  +    M    + PDV+TY  L++ LCK  + ++A 
Sbjct: 396 VKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEAR 455

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM----------------------K 257
            L   M  +G+ P+  I+  ++ G+ K G +    D+                       
Sbjct: 456 SLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAY 515

Query: 258 EARKIVDE-------MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             R ++DE       M   GL+P+ +TY  L+D  CK G ++ A+    +MI  G+  +N
Sbjct: 516 AKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNN 575

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V F +L+ G C   K  + E +  EML  G++PD   +  V+   CK G      RL+  
Sbjct: 576 VVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDS 635

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P V +YN L++G C   ++  A  LLD M+  G+ P+ ++YN LL G+CK G 
Sbjct: 636 MVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR 695

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLVS---KSSKYRQKR 464
            ++   L  E   KG+      Y ++++   +S ++ + R
Sbjct: 696 IDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 189/397 (47%), Gaps = 34/397 (8%)

Query: 17  LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLD 76
           + A+   +   +++H+ +  K  G S ++      T GT     ++DAL      LG +D
Sbjct: 512 ICAYAKRAMIDEVMHIFIKMKQQGLSPNVV-----TYGT-----LIDAL----CKLGRVD 557

Query: 77  DAIQCFRLLRKH-------YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           DA+  F  +           F     G  C +D+  +          +LE+L+ G  P +
Sbjct: 558 DAVLQFNQMINEGVTPNNVVFNSLVYGL-CTVDKWEKVE------ELFLEMLNQGIRPDI 610

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             FN ++  LCKEG++ +A+ + D     GL    +S+NTLI+GHC A  +DE  +L   
Sbjct: 611 VFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDG 670

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  +G++P++ +Y+ L++G CK  R+D+A  L  EM  +G+TP    + T+++G  ++GR
Sbjct: 671 MVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGR 730

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   EAR++   M  +       TY+I+LDGFCK    + A  I + +    ++LD
Sbjct: 731 ------FSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLD 784

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            + F  +I G  +GG+  +A  +   +   GL P   TY ++ +   + G  +    L  
Sbjct: 785 IITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFS 844

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            M   G  P     NAL+  L   G++  A   L  +
Sbjct: 845 VMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKL 881



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 172/336 (51%), Gaps = 16/336 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P    +++++   C+ G+++     F    K G     +  N L+ G C  K + E   
Sbjct: 81  APDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMH 140

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE---RGLTPNDVIFTTLI 241
            L   M   G R  V +Y+ L+ GLC   R ++A  LLH M +      +P+ V +  +I
Sbjct: 141 VLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVI 200

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G    G++D      +A  +  EM   G++PD +TY  ++DG CK  +++ A D+ ++M
Sbjct: 201 NGFFNEGQVD------KAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQM 251

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +++G++ +NV +  +I G C+  +V  AE + ++M+  G+KP + TY  +ID  CK    
Sbjct: 252 VEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAV 311

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                + ++M   G  P   TYN +++GLCK   +  A  +   M+D GV PD++TY I+
Sbjct: 312 DRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTII 371

Query: 422 LEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
           ++G CK  +    E   +   +KG+  +   Y  L+
Sbjct: 372 IDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLI 407



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 192/417 (46%), Gaps = 23/417 (5%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           ++  Y  M+H        S+  DLL+L+V+  G+  +  +F +++               
Sbjct: 469 SVTIYGIMLHGYGKKGALSEMHDLLNLMVAN-GISPNHRIFNTVI--------------- 512

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
              Y     +D+ +  F  +++            LID + +       +  + ++++ G 
Sbjct: 513 -CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGV 571

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+  VFN L++ LC   K +  + +F E   +G+    V FNT++   CK   + E  R
Sbjct: 572 TPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARR 631

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   G++PDV +Y+ LI+G C  +R+D+A  LL  M   GL PN V + TL+ G+C
Sbjct: 632 LIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYC 691

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GRID       A  +  EM   G+ P   TY  +L+G  + G    A ++   MIK  
Sbjct: 692 KAGRID------NAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSR 745

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
                  ++ ++ GFC+     EA ++ + +  + L+ D  T+ ++ID   K G  +   
Sbjct: 746 KLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAM 805

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            L   + ++G +P+V TY  +   L + G L+  + L   M   G  P+    N L+
Sbjct: 806 DLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALI 862



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
           C+N + PD  TY+I++  FC+ G LE        ++K G  +D++    L+ G C   +V
Sbjct: 76  CSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRV 135

Query: 327 VEA-ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH----LPAVE 381
            EA   +LR+M +VG +    +Y  ++   C     +    LL  M  DG      P V 
Sbjct: 136 GEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELL-HMMVDGQDSSCSPDVV 194

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---PEDFDKLQ 438
           +YN ++NG    GQ+  A  L    L++GV PD +TYN +++G CK       ED  +  
Sbjct: 195 SYNIVINGFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQM 251

Query: 439 SEKGLVSDYACYTSLVSKSSKYRQ 462
            EKG+  +   Y +++    K ++
Sbjct: 252 VEKGVKPNNVTYNTIIDGLCKAQE 275



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  FN+++  L K G+ +DA  +F      GL  + V++  +     +  +L+E   L S
Sbjct: 785 IITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFS 844

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           VME SG  P+ +  +ALI  L     +  A   L ++ E+  +
Sbjct: 845 VMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFS 887


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 175/315 (55%), Gaps = 6/315 (1%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   +G   ++   G  P+V  ++ LM+ LCK G+  +A+ +FD   KRGL     ++ T
Sbjct: 287 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 346

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G+     L E   L  +M  +G++PD + ++ LI    K+ ++D A L+  +M + G
Sbjct: 347 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHG 406

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN V + T+ID  CK+G +D      +A    ++M   GL P+ I YT L+ G C   
Sbjct: 407 LNPNVVCYGTVIDVLCKSGSVD------DAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             + A ++  EM+ RGI L+ + F ++I   C+ G+V+E+E++   M+++G+KPD  TY 
Sbjct: 461 KWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYN 520

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +ID  C  G      +LL  M S G  P + TY  L+NG C+  ++ +A  L   M+  
Sbjct: 521 TLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS 580

Query: 410 GVVPDDITYNILLEG 424
           GV P+ ITYNI+L+G
Sbjct: 581 GVSPNIITYNIILQG 595



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 184/371 (49%), Gaps = 44/371 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  +VFN+L+    K+ K+  A +VF +  + GL+   V + T+I+  CK+ ++D+ 
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M   G+ P++  Y++LI+GLC  ++ D AE L+ EM +RG+  N + F ++ID 
Sbjct: 431 MLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ PD ITY  L+DG C  G ++ A  +   M+ 
Sbjct: 491 HCKEGRV------IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS 544

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+CR  ++ +A  + +EM+  G+ P+  TY +++        T  
Sbjct: 545 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 604

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-------------------QLKNANMLLD 404
              L   +   G    + TYN +++GLCK+                    + +  N+++ 
Sbjct: 605 AKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 664

Query: 405 TML---------DL-------GVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVS 445
            +L         DL       G+VPD  TY+++ E   + G+ E+ D L     E G  +
Sbjct: 665 ALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSA 724

Query: 446 DYACYTSLVSK 456
           D     S+V K
Sbjct: 725 DSRMLNSIVRK 735



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 170/334 (50%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N +++   KEG    A   + E   RG+    V+++++I   CKA+ +D+ 
Sbjct: 196 GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKA 255

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M  +G+ PD  TY+++++G C   +  +A   L +M   G+ PN V +++L++ 
Sbjct: 256 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNY 315

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKNGR        EARKI D M   GL PD  TY  LL G+  +G L     +   M++
Sbjct: 316 LCKNGR------STEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 369

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI+ D+  F  LI  + +  KV +A  +  +M + GL P+   Y  VID  CK+G    
Sbjct: 370 NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDD 429

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                ++M  +G  P +  Y +L++GLC   +   A  L+  MLD G+  + I +N +++
Sbjct: 430 AMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489

Query: 424 GHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
            HCK G   + +K   L    G+  D   Y +L+
Sbjct: 490 SHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 169/346 (48%), Gaps = 29/346 (8%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+LD G  P V  ++ ++  LCK   +  A  V +   K G+    +++N++++G+C 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 283

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           +    E       M   G+ P+V TYS+L+N LCK  R  +A  +   M +RGL P+   
Sbjct: 284 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIAT 343

Query: 237 FTTLIDGHCKNGR-IDMAG----------------------------DMKEARKIVDEMC 267
           + TL+ G+   G  ++M                               + +A  +  +M 
Sbjct: 344 YRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMR 403

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
            +GLNP+ + Y  ++D  CK G ++ A+   ++MI  G+  + + +T+LI G C   K  
Sbjct: 404 QHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWD 463

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +AE ++ EML  G+  +   +  +ID  CK G      +L   M   G  P + TYN L+
Sbjct: 464 KAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +G C  G++  A  LL +M+ +GV PD +TY  L+ G+C+    +D
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 569



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 14/318 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +  T  ++  LI   C
Sbjct: 45  ELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYAILIGCCC 103

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
           +A  LD GF     +   G R D  T++ L+ GLC + R  DA +++L  M E G  P+ 
Sbjct: 104 RAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDV 163

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GLNPDKITYTILLDGFCKEGDL 291
             +  L+ G C   R       +EA +++  M  +   G  PD ++Y  +L+GF KEGD 
Sbjct: 164 FSYNNLLKGLCDENR------SQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDS 217

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A     EM+ RGI  D V ++++I+  C+   + +A  +L  M+K G+ PD  TY  +
Sbjct: 218 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 277

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +  +C +G  K     LK+MRSDG  P V TY++LMN LCK+G+   A  + D+M   G+
Sbjct: 278 LHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL 337

Query: 412 VPDDITYNILLEGHCKHG 429
            PD  TY  LL+G+   G
Sbjct: 338 EPDIATYRTLLQGYATKG 355



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 203/448 (45%), Gaps = 61/448 (13%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE---TRGTHLP-------- 58
           YS+++++L  +   ++AR +   + +K+G+    + + ++L+   T+G  +         
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 59  ---GL-----VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G+     V + L+  Y     +D A+  F  +R+H           +ID + ++   
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D G +P++ V+  L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++PD+ TY+ LI+G C   ++D+A  LL  M   G+
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL-------- 282
            P+ V + TLI+G+C+  R+D      +A  +  EM ++G++P+ ITY I+L        
Sbjct: 548 KPDIVTYGTLINGYCRVSRMD------DALALFKEMVSSGVSPNIITYNIILQGLFHTRR 601

Query: 283 ---------------------------DGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
                                       G CK    + AL + + +    ++L+   F  
Sbjct: 602 TAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 661

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I    + G++ EA+ +       GL PD  TY+++ +   + G  +    L   M  +G
Sbjct: 662 MIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG 721

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLL 403
                   N+++  L + G +  A   L
Sbjct: 722 CSADSRMLNSIVRKLLQRGDITRAGTYL 749


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 213/418 (50%), Gaps = 14/418 (3%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR-GCRCLIDRMMRTN 108
           ++T+ T      L  ++  Y D+G +D A++ +  + K +  +P+   C  L++ +++  
Sbjct: 124 MKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLLVKHR 183

Query: 109 LPTVTLGFYLEILDYGYSPSV----YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
                   Y E++D      +    Y  ++++  LC +G+I+D   + +    +G     
Sbjct: 184 RIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNI 243

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           V +NTLI+G+CK   ++  ++L   ++  G  P + T+ +L+NG CK    +  +LLL E
Sbjct: 244 VFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLE 303

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M +RGL+ N  ++  +ID      R  +  D+K A+  + EM  N   PD +TY  L++ 
Sbjct: 304 MKDRGLSVNVQMYNNIIDA-----RYKLGFDIK-AKDTLKEMSENCCEPDLVTYNTLINH 357

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           FC  G++E A  + ++ I+RG+  + + +T L+ G+C+ G+  +A   L EM   GL+ D
Sbjct: 358 FCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVD 417

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             +Y  +I      G+  T   +   M + G LP    YN LMNGL K G+L  A ++L 
Sbjct: 418 MISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLT 477

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
            MLD  + PD   Y  L++G  +HGN ++  KL     EKGL      Y  ++   SK
Sbjct: 478 EMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSK 535



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 169/394 (42%), Gaps = 78/394 (19%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+   +  L+H  CK+G+   A     E    GL    +S+  LI+G   A  +D  
Sbjct: 378 GLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTA 437

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             ++  M   G+ PD   Y+ L+NGL K+ +L  A+++L EM ++ + P+  ++ TL+DG
Sbjct: 438 LTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDG 497

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
             ++G +D A                             G M  A   +D+M      PD
Sbjct: 498 FIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPD 557

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             T++ ++DG+ K+ ++ + L I   M+K+  + + V +T+LI+G+CR G+   AE++  
Sbjct: 558 IFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFS 617

Query: 335 EMLKVGLKPDDATYTMVIDCFCK------------------------------NGDTKTG 364
            M   GLKP   TY+++I  FCK                              NG T T 
Sbjct: 618 MMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTK 677

Query: 365 FR-------------------LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
                                    M  DG       YN ++  LC+   +K A  L + 
Sbjct: 678 ATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNK 737

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           ML  G+  D +++  L+ G C  GN +++  + S
Sbjct: 738 MLAFGLCSDAVSFVALIHGICLEGNSKEWRNMIS 771



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 156/376 (41%), Gaps = 70/376 (18%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T+V   + H    +A+ L  LI+ +KG+                  PG+V   +MI 
Sbjct: 490 VYATLVDGFIRHGNLDEAKKLFQLII-EKGLD-----------------PGVVGYNVMIK 531

Query: 69  -YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            +   G +D+AI C                   ID+M R +                + P
Sbjct: 532 GFSKSGMMDNAILC-------------------IDKMRRAH----------------HVP 556

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            ++ F+ ++    K+  +     +F    K+      V++ +LING+C+        +L 
Sbjct: 557 DIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLF 616

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDA----ELLLHEMCERGLTPNDVIFTTLIDG 243
           S+M   G++P V TYS LI   CKE +L  A    EL+L   C    TPND  F  L++G
Sbjct: 617 SMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKC----TPNDAAFHYLVNG 672

Query: 244 HCKNGRIDMAGD----MKEARKIVDE----MCTNGLNPDKITYTILLDGFCKEGDLESAL 295
                   ++ +     + +R + ++    M  +G       Y  +L   C++  +++AL
Sbjct: 673 FTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCILICLCQQRMVKTAL 732

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +R +M+  G+  D V+F ALI G C  G   E   M+   L  G       Y++ +D F
Sbjct: 733 QLRNKMLAFGLCSDAVSFVALIHGICLEGNSKEWRNMISCDLNEGELQIALKYSLELDKF 792

Query: 356 CKNGDTKTGFRLLKEM 371
              G       +L+ M
Sbjct: 793 IPEGGISEASGILQAM 808



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+  ++  G++     +N ++  LC++  +K A  + ++    GL + AVSF  LI+G C
Sbjct: 699 FFSRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGIC 758

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
              N  E   + S     G       YS  ++    E  + +A  +L  M +  ++PN  
Sbjct: 759 LEGNSKEWRNMISCDLNEGELQIALKYSLELDKFIPEGGISEASGILQAMIKGYVSPNQD 818

Query: 236 IFTTLIDGHCKNGR 249
           +   L + + +NG+
Sbjct: 819 L-NNLKEPNMENGK 831


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 178/340 (52%), Gaps = 29/340 (8%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+LD G++P+   F +LM    K+G I++A  +F       +  T  +   +I G CK
Sbjct: 425 YKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCK 484

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A    EG  L +     G  P    Y+ +I+G  KE  ++ A  +  EMCE G+TP+ V 
Sbjct: 485 AGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVT 544

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           +T+LIDG CK   ID+A                              DMK A ++++E+ 
Sbjct: 545 YTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELR 604

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GL+P++  Y  ++ GF    ++E A+D+ K+M+  GI  D   +T+LI G  + G+++
Sbjct: 605 GAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLL 664

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            A  +  EML  G+ PDD  +T++I+  C  G  +   ++L++M     +P+V  YN L+
Sbjct: 665 YASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 724

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            G  K G L+ A  L D MLD G+VPD+ITY+IL+ G  K
Sbjct: 725 AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFK 764



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 206/450 (45%), Gaps = 68/450 (15%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G ++ A + +  ++    R        +++  ++          + + L+ G + +V+ F
Sbjct: 312 GNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLA-NVFTF 370

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L+  LCKEGK+ +A  ++DE   +G+    VS+N +I GHC+  N++   ++   M  
Sbjct: 371 NTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLD 430

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR--- 249
           +G  P+  T++ L++G  K+  +++A  + H M +  + P D     +I G CK GR   
Sbjct: 431 NGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFE 490

Query: 250 -----------------------ID---MAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
                                  ID     G++  A  +  EMC  G+ P  +TYT L+D
Sbjct: 491 GRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLID 550

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFCK  +++ AL +  +M ++G+++D  A+  LI GFC+   +  A  +L E+   GL P
Sbjct: 551 GFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSP 610

Query: 344 -----------------------------------DDATYTMVIDCFCKNGDTKTGFRLL 368
                                              D  TYT +ID   K+G       + 
Sbjct: 611 NRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIH 670

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM S G LP    +  L+NGLC  GQ +NA  +L+ M    ++P  + YN L+ GH K 
Sbjct: 671 TEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKE 730

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           GN ++  +L  E   +GLV D   Y  LV+
Sbjct: 731 GNLQEAFRLHDEMLDRGLVPDNITYDILVN 760



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 179/400 (44%), Gaps = 45/400 (11%)

Query: 99  CLIDRMMRT----NLP-TVTLGFYLEILDY-------GYSPSVYVFNVLMHKLCKEGKIK 146
           CL+DR++      N P  +  G  LE   +       G       +++ +H LC +    
Sbjct: 151 CLMDRLVECTKLYNFPLDIQEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSG 210

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
            A  +  E    G      +F ++I    K  N+ E  RLK  M   G   ++   ++L+
Sbjct: 211 YALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLM 270

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----GDMK----- 257
            G C +  L  A +L++E+ E GL PN V ++ LIDG CKNG I+ A     +MK     
Sbjct: 271 KGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIR 330

Query: 258 --------------------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
                                A  + ++   +GL  +  T+  LL   CKEG +  A ++
Sbjct: 331 SSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNL 389

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             E+I +GI  + V++  +I G CR   +  A ++ +EML  G  P+  T+T+++D + K
Sbjct: 390 WDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFK 449

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            GD +  F +   M+    LP   T   ++ GLCK G+      L +  +  G VP  + 
Sbjct: 450 KGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMP 509

Query: 418 YNILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
           YN +++G  K GN     +  +   E G+      YTSL+
Sbjct: 510 YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLI 549



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 174/404 (43%), Gaps = 92/404 (22%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           +  ++T++ +L      ++A +L   +++K G+  +   + +I+     H     ++A  
Sbjct: 367 VFTFNTLLSWLCKEGKMNEACNLWDEVIAK-GISPNVVSYNNIILG---HCRKDNINAAC 422

Query: 67  IVY---VDLGFLDDAIQCFRLLRKHYFRI-PARGCRCLIDRMMRTN-LPT-VTLGFYLE- 119
            VY   +D GF  +A+  F +L   YF+         +  RM   N LPT  TLG  ++ 
Sbjct: 423 KVYKEMLDNGFTPNAVT-FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKG 481

Query: 120 ----------------ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
                            +  G+ P+   +N ++    KEG I  A  V+ E  + G+  +
Sbjct: 482 LCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPS 541

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V++ +LI+G CK  N+D   +L + M+  G++ D+  Y  LI+G CK   +  A  LL+
Sbjct: 542 TVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLN 601

Query: 224 EMCERGLTPNDVIF-----------------------------------TTLIDGHCKNG 248
           E+   GL+PN  I+                                   T+LIDG  K+G
Sbjct: 602 ELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSG 661

Query: 249 RIDMAGDM-----------------------------KEARKIVDEMCTNGLNPDKITYT 279
           R+  A D+                             + ARKI+++M    + P  + Y 
Sbjct: 662 RLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYN 721

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            L+ G  KEG+L+ A  +  EM+ RG+  DN+ +  L++G  +G
Sbjct: 722 TLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKG 765



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 17/206 (8%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
            ++ + AY T++      +    A +LL+ +   +G G S + F              + 
Sbjct: 573 LKMDIKAYGTLIDGFCKRRDMKSAHELLNEL---RGAGLSPNRF--------------IY 615

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           ++++  + ++  +++AI  ++ +         +    LID ++++         + E+L 
Sbjct: 616 NSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLS 675

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P      VL++ LC +G+ ++A+ + ++   + +  + + +NTLI GH K  NL E
Sbjct: 676 KGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQE 735

Query: 183 GFRLKSVMEGSGMRPDVYTYSALING 208
            FRL   M   G+ PD  TY  L+NG
Sbjct: 736 AFRLHDEMLDRGLVPDNITYDILVNG 761


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 177/334 (52%), Gaps = 6/334 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+     N          +IL  G+ P    F  L+  LC EGKI +A  +FD+    G
Sbjct: 106 LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 165

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++ TLING CK  N     RL   ME    +PDV  Y+++I+ LCK+ ++ +A 
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 225

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M  +G++P+   +T+L+   C         + K    ++++M  + + PD + ++
Sbjct: 226 NLFSQMVGQGISPDIFTYTSLVHALCN------LCEWKHVTTLLNQMVNSKILPDVVIFS 279

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CKEG +  A +I   MI+RG+E D V +T L+ G C   ++ EA ++   M++ 
Sbjct: 280 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 339

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD  +YT +I+ +CK         L +EM     +P  +TYN LM GLC  G+L++A
Sbjct: 340 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDA 399

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
             L   M+  G +PD +TY+ILL+  CK+ + E+
Sbjct: 400 IALFHEMVARGQMPDLVTYSILLDSLCKNRHLEE 433



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 166/329 (50%), Gaps = 6/329 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    T     + +++  G SP ++ +  L+H LC   + K    + ++     
Sbjct: 211 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 270

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V F+T+++  CK   + E   +  +M   G+ PDV TY+ L++G C ++ +D+A 
Sbjct: 271 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 330

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  P+ + +TTLI+G+CK  +ID      +A  + +EMC     PD  TY 
Sbjct: 331 KVFDMMVRKGFAPDVISYTTLINGYCKIHKID------KAMYLFEEMCRKEWIPDTKTYN 384

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C  G L+ A+ +  EM+ RG   D V ++ L+   C+   + EA  +L+ +   
Sbjct: 385 TLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEAS 444

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L PD   Y ++ID  C+ G+ +    L   + S G  P+V TYN +++GLCK G L  A
Sbjct: 445 NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEA 504

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           N L   M      PD  TYN +  G  ++
Sbjct: 505 NKLFMEMDGNDCSPDGCTYNTIARGFLQN 533



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 159/318 (50%), Gaps = 10/318 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V +F+ ++  LCKEGK+ +A  + D   +RG+    V++ TL++GHC    +DE  ++
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M   G  PDV +Y+ LING CK +++D A  L  EMC +   P+   + TL+ G C 
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR      +++A  +  EM   G  PD +TY+ILLD  CK   LE A+ + K +    +
Sbjct: 393 VGR------LQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNL 446

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +  +I G CR G++  A  +   +   GL P   TY ++I   CK G      +
Sbjct: 447 NPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANK 506

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD--ITYNILLEG 424
           L  EM  +   P   TYN +  G  ++ +   A  LL+ ML  G   D   +  ++L E 
Sbjct: 507 LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFLMLSVLSED 566

Query: 425 HCKH--GNPEDFDKLQSE 440
             ++    PE FD L  E
Sbjct: 567 DRRYFIFIPEGFDLLGWE 584



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 156/297 (52%), Gaps = 11/297 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V F  L+    K K+      L + M+  G+ P+VYT + LIN  C  NR+  A  +L
Sbjct: 64  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVL 123

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            ++ + G  P+   FTTLI G C  G+I       EA  + D+M   G  P+ +TY  L+
Sbjct: 124 AKILKLGHQPDPTTFTTLIRGLCVEGKIG------EALHLFDKMIDEGFQPNVVTYGTLI 177

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G CK G+  +A+ + + M +   + D V +T++I   C+  +V EA  +  +M+  G+ 
Sbjct: 178 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS 237

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  TYT ++   C   + K    LL +M +   LP V  ++ +++ LCK G++  A+ +
Sbjct: 238 PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEI 297

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           +D M+  GV PD +TY  L++GHC     ++    FD +   KG   D   YT+L++
Sbjct: 298 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD-MMVRKGFAPDVISYTTLIN 353



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 140/301 (46%), Gaps = 6/301 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F  L+  + K         +  +    G+     + N LIN  C    +   F +
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + +   G +PD  T++ LI GLC E ++ +A  L  +M + G  PN V + TLI+G CK
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G+   A +++  M      PD + YT ++D  CK+  +  A ++  +M+ +GI
Sbjct: 183 ------VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGI 236

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T+L+   C   +      +L +M+   + PD   ++ V+D  CK G       
Sbjct: 237 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 296

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++  M   G  P V TY  LM+G C   ++  A  + D M+  G  PD I+Y  L+ G+C
Sbjct: 297 IVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC 356

Query: 427 K 427
           K
Sbjct: 357 K 357



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  + E++  G  P +  +++L+  LCK   +++A  +        L+     +N +I+
Sbjct: 399 AIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIID 458

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+A  L+    L S +   G+ P V+TY+ +I+GLCK   L++A  L  EM     +P
Sbjct: 459 GMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSP 518

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +   + T+  G  +N       +   A ++++EM   G + D
Sbjct: 519 DGCTYNTIARGFLQN------NETLRAIQLLEEMLARGFSAD 554



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 35/134 (26%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID M R          +  +   G  PSV+ +N+++H LCK G + +A  +F E     
Sbjct: 456 IIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFME----- 510

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                                         M+G+   PD  TY+ +  G  + N    A 
Sbjct: 511 ------------------------------MDGNDCSPDGCTYNTIARGFLQNNETLRAI 540

Query: 220 LLLHEMCERGLTPN 233
            LL EM  RG + +
Sbjct: 541 QLLEEMLARGFSAD 554


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 177/321 (55%), Gaps = 6/321 (1%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + +  + ++ + G S  +Y F +L+H  C+  +   A  +  +  K G   + V+  +L+
Sbjct: 633 IVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLL 692

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG C+     E   L   M   G+ P+V  Y+ +INGLCK   L++A  + + M ++G+ 
Sbjct: 693 NGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIV 752

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
            + V + TLI G C +GR        +A +++ +M    ++P+ I +T L+D F KEG+L
Sbjct: 753 ADAVTYNTLISGLCNSGR------WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 806

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A ++ KEMI+R +  + + + +LI+GFC  G++ +A+ M   M+  G  PD  TY  +
Sbjct: 807 LEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTL 866

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I  FCK+   + G +L  EM   G +    TYN L++G C+ G+L  A  + + M+D GV
Sbjct: 867 ITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 926

Query: 412 VPDDITYNILLEGHCKHGNPE 432
            PD +TYNILL+  C +G  E
Sbjct: 927 PPDIVTYNILLDCLCNNGKIE 947



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 184/370 (49%), Gaps = 37/370 (10%)

Query: 97   CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
            CRC      R +L    LG   +++  G+ PS+     L++  C+  + ++A  + D   
Sbjct: 661  CRC-----SRFSLALALLG---KMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMA 712

Query: 157  KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            + GL    V +NT+ING CK ++L+    +   ME  G+  D  TY+ LI+GLC   R  
Sbjct: 713  ELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWT 772

Query: 217  DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------------------- 253
            DA  LL +M +R + PN + FT LID   K G +  A                       
Sbjct: 773  DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLI 832

Query: 254  ------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                  G + +A+ + D M + G  PD +TY  L+ GFCK   +E  + +  EM  +G+ 
Sbjct: 833  NGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLV 892

Query: 308  LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
             D   +  LI G+C+ GK+  A+++   M+  G+ PD  TY +++DC C NG  +    +
Sbjct: 893  GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVM 952

Query: 368  LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            +++++ +     + TYN ++ G+C++ ++K A  L  ++   GV  D I Y  ++ G C+
Sbjct: 953  VEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCR 1012

Query: 428  HGNPEDFDKL 437
            +G   + DKL
Sbjct: 1013 NGLRREADKL 1022



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDE 182
           GY P+V V+N L+  LCK G +  A  + +E  K+G L A  V++NTL+ G C +    +
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             R+   M    + PDV+T++ALI+   K+  LD+A+ L  +M +  + PN V + +LI+
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C +GR      +  A+K  D M + G  P+ +TY  L++GFCK   +E  + + + M 
Sbjct: 285 GLCMHGR------LYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMY 338

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + G+  D   +  LI G+C+ GK+  A+ +   M+  G+ PD  T+ +++   C NG+  
Sbjct: 339 REGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIG 398

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +      +MRS      +  YN +++GLCK  +++ A  L   +   GV PD  TY I++
Sbjct: 399 SAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMI 458

Query: 423 EGHCKHGNPEDFDKL 437
            G CK+G   + D+L
Sbjct: 459 LGLCKNGPRREADEL 473



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 173/308 (56%), Gaps = 7/308 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G S  +Y F +L+H  C+  ++  A  +  +  K G   + V+F +L++G C    + +
Sbjct: 94  FGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHD 153

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLI 241
            F L + M  SG  P+V  Y+ LI+ LCK   ++ A  LL+EM ++G L  + V + TL+
Sbjct: 154 AFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLL 213

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C       +G+ ++A +I+ +M    +NPD  T+T L+D F K+G+L+ A ++ K+M
Sbjct: 214 TGLC------YSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM 267

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++  I  + V + +LI+G C  G++  A++    M   G  P+  TY  +I+ FCK+   
Sbjct: 268 LQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRV 327

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           + G +L + M  +G +    TYN L++G C+ G+L+ A  +   M+  GV PD IT+ IL
Sbjct: 328 EDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCIL 387

Query: 422 LEGHCKHG 429
           L G C +G
Sbjct: 388 LHGLCVNG 395



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 163/314 (51%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F E  +     + V F  ++    K    D    L   ME  G+  D+Y+++
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+ +R   A  LL +M + G  P+ V   +L++G C+  R       +EA  +V
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNR------FQEAVSLV 708

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M   GL P+ + Y  +++G CK  DL +AL+I   M K+GI  D V +  LISG C  
Sbjct: 709 DSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNS 768

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A R+LR+M+K  + P+   +T +ID F K G+      L KEM      P + TY
Sbjct: 769 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTY 828

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           N+L+NG C  G+L +A  + D M+  G  PD +TYN L+ G CK    ED  KL  E   
Sbjct: 829 NSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTH 888

Query: 441 KGLVSDYACYTSLV 454
           +GLV D   Y +L+
Sbjct: 889 QGLVGDAFTYNTLI 902



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 161/316 (50%), Gaps = 12/316 (3%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           + +DA  +F E  +     + V F  L+      +  +        ME  G+  D+Y+++
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFT 104

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+ +RL  A  +L +M + G  P+ V F +L+ G C   RI       +A  +V
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRI------HDAFSLV 158

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG-IELDNVAFTALISGFCR 322
             M  +G  P+ + Y  L+D  CK GD+  AL++  EM K+G +  D V +  L++G C 
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            G+  +A R+LR+M K  + PD  T+T +ID F K G+      L K+M      P   T
Sbjct: 219 SGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVT 278

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQ 438
           YN+L+NGLC HG+L +A    D M   G  P+ +TYN L+ G CK    ED    F ++ 
Sbjct: 279 YNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMY 338

Query: 439 SEKGLVSDYACYTSLV 454
            E GLV D   Y +L+
Sbjct: 339 RE-GLVGDTFTYNTLI 353



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 141/258 (54%), Gaps = 6/258 (2%)

Query: 127  PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            P+V  F  L+    KEG + +A+ ++ E  +R +H   +++N+LING C    L +   +
Sbjct: 788  PNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHM 847

Query: 187  KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +M   G  PDV TY+ LI G CK  R++D   L  EM  +GL  +   + TLI G+C+
Sbjct: 848  FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQ 907

Query: 247  NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             G++++A      +K+ + M   G+ PD +TY ILLD  C  G +E AL + +++ K  +
Sbjct: 908  AGKLNVA------QKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQM 961

Query: 307  ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            ++D + +  +I G CR  KV EA  + R + + G+K D   Y  +I   C+NG  +   +
Sbjct: 962  DVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADK 1021

Query: 367  LLKEMRSDGHLPAVETYN 384
            L   M+ DG +P+   Y+
Sbjct: 1022 LCTRMKEDGFMPSERIYD 1039



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 41/339 (12%)

Query: 122  DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC------ 175
            + G  P+V ++N +++ LCK   + +A  +F    K+G+ A AV++NTLI+G C      
Sbjct: 713  ELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWT 772

Query: 176  -----------------------------KAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
                                         K  NL E   L   M    + P++ TY++LI
Sbjct: 773  DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLI 832

Query: 207  NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
            NG C + RL DA+ +   M  +G  P+ V + TLI G CK+ R++      +  K+  EM
Sbjct: 833  NGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE------DGMKLFCEM 886

Query: 267  CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
               GL  D  TY  L+ G+C+ G L  A  +   M+  G+  D V +  L+   C  GK+
Sbjct: 887  THQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKI 946

Query: 327  VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             +A  M+ ++ K  +  D  TY ++I   C+N   K  + L + +   G       Y  +
Sbjct: 947  EKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITM 1006

Query: 387  MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            ++GLC++G  + A+ L   M + G +P +  Y+  L  H
Sbjct: 1007 ISGLCRNGLRREADKLCTRMKEDGFMPSERIYDETLRDH 1045



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 156/299 (52%), Gaps = 6/299 (2%)

Query: 50   LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
            +E +G     +  + L+    + G   DA +  R + K            LID  ++   
Sbjct: 746  MEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 805

Query: 110  PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                   Y E++     P++  +N L++  C +G++ DA+ +FD    +G     V++NT
Sbjct: 806  LLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNT 865

Query: 170  LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
            LI G CK+K +++G +L   M   G+  D +TY+ LI+G C+  +L+ A+ + + M + G
Sbjct: 866  LITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 925

Query: 230  LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
            + P+ V +  L+D  C NG+I+      +A  +V+++  N ++ D ITY I++ G C+  
Sbjct: 926  VPPDIVTYNILLDCLCNNGKIE------KALVMVEDLQKNQMDVDIITYNIIIQGMCRND 979

Query: 290  DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             ++ A  + + + ++G++LD +A+  +ISG CR G   EA+++   M + G  P +  Y
Sbjct: 980  KVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIY 1038



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y ++L     P+   +N L++ LC  G++  A+  FD    +G     V++NTLING C
Sbjct: 263 LYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFC 322

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K++ +++G +L   M   G+  D +TY+ LI+G C+  +L  A+ +   M   G+TP+ +
Sbjct: 323 KSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDII 382

Query: 236 IFTTLIDGHCKNGRIDMA----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
               L+ G C NG I  A     DM+   K +      G+    + Y I++ G CK   +
Sbjct: 383 THCILLHGLCVNGEIGSAMVKFNDMRSGEKYL------GI----VAYNIMIHGLCKADKV 432

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           E A ++   +   G++ D   +T +I G C+ G   EA+ + R M + G+
Sbjct: 433 EEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V FT +++   +  K      +  +M  +G+  D  ++T++I CFC+         LL +
Sbjct: 616 VDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGK 675

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH-- 428
           M   G  P++ T  +L+NG C+  + + A  L+D+M +LG+ P+ + YN ++ G CK+  
Sbjct: 676 MMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRD 735

Query: 429 -GNPEDFDKLQSEKGLVSDYACYTSLVS 455
             N  +      +KG+V+D   Y +L+S
Sbjct: 736 LNNALEIFYGMEKKGIVADAVTYNTLIS 763



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 7/189 (3%)

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L  GF      E ALD+  EM++       V FT L++      +        ++M   G
Sbjct: 36  LRTGFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFG 95

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           +  D  ++T++I CFC+         +L +M   G+ P++ T+ +L++G C   ++ +A 
Sbjct: 96  ISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAF 155

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSK 456
            L+ +M+  G  P+ + YN L++  CK+G+     E  ++++ +  L +D   Y +L++ 
Sbjct: 156 SLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTG 215

Query: 457 ---SSKYRQ 462
              S ++RQ
Sbjct: 216 LCYSGEWRQ 224



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 64/126 (50%)

Query: 119  EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
             ++D G  P +  +N+L+  LC  GKI+ A ++ ++  K  +    +++N +I G C+  
Sbjct: 920  RMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRND 979

Query: 179  NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             + E + L   +   G++ D   Y  +I+GLC+     +A+ L   M E G  P++ I+ 
Sbjct: 980  KVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYD 1039

Query: 239  TLIDGH 244
              +  H
Sbjct: 1040 ETLRDH 1045


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P+   +  LM  LC +G++K      D+   +      VS+ TL+NG CK  
Sbjct: 70  KILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTG 129

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L  ++E    RP+V  YSA+I+GLCK+  +++A  L  EM  R + PN + + 
Sbjct: 130 ETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYN 189

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI   C      +AG +  A  ++ EM    +NPD  T++IL+D  CKEG  ++A  I 
Sbjct: 190 TLICAFC------LAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIF 241

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M++ G+  +  ++  +I+G C+  +V EA  +LREML   + PD  TY  +ID  CK+
Sbjct: 242 HAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKS 301

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G   +   L+ EM   G    V TY +L++ LCK+  L  A  L   M + G+ P   TY
Sbjct: 302 GRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTY 361

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
             L++G CK G  ++  +L      KG   D   YT ++S
Sbjct: 362 TALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMIS 401



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 170/328 (51%), Gaps = 11/328 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I D    P+V +++ ++  LCK+  + +A  ++ E   R +    +++NTLI   C A  
Sbjct: 141 IEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQ 200

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L   F L   M    + PDVYT+S LI+ LCKE +  +A+ + H M + G+ PN   +  
Sbjct: 201 LMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNI 258

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I+G CK  R+D      EA  ++ EM    + PD +TY  L+DG CK G + SAL++  
Sbjct: 259 MINGLCKCKRVD------EAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMN 312

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  RG   D V +T+L+   C+   + +A  +  +M + G++P   TYT +ID  CK G
Sbjct: 313 EMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGG 372

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             K    L + +   G    V TY  +++GLCK G    A  +   M D G +P+ +T+ 
Sbjct: 373 RLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFE 432

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLV 444
           I++    +    +  +KL  E   KGL+
Sbjct: 433 IIIRSLFEKDENDKAEKLLHEMIAKGLL 460



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 168/336 (50%), Gaps = 10/336 (2%)

Query: 78  AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
           AI+  R++     R        +ID + +  L       Y E+      P+V  +N L+ 
Sbjct: 134 AIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLIC 193

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-AKNLDEGFRLKSVMEGSGMR 196
             C  G++  A  +  E   + ++    +F+ LI+  CK  KN  + F     M   G+ 
Sbjct: 194 AFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFH---AMVQMGVN 250

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P+VY+Y+ +INGLCK  R+D+A  LL EM  + + P+ V + +LIDG CK+GRI      
Sbjct: 251 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRIT----- 305

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
             A  +++EM   G   D +TYT LLD  CK  +L+ A  +  +M +RGI+     +TAL
Sbjct: 306 -SALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTAL 364

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I G C+GG++  A+ + + +L  G   D  TYT++I   CK G       +  +M  +G 
Sbjct: 365 IDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGC 424

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +P   T+  ++  L +  +   A  LL  M+  G++
Sbjct: 425 IPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 460



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 150/322 (46%), Gaps = 34/322 (10%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           + FN ++    K K       L   M+  G+  ++ T S LIN  C   ++  +  LL +
Sbjct: 11  IEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGK 70

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRID-----------------------------MAGD 255
           + + G  PN + +TTL+ G C  G +                                G+
Sbjct: 71  ILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGE 130

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
            + A K++  +      P+ + Y+ ++DG CK+  +  A D+  EM  R I  + + +  
Sbjct: 131 TRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNT 190

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI  FC  G+++ A  +L EM+   + PD  T++++ID  CK G  K   ++   M   G
Sbjct: 191 LICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMG 248

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             P V +YN ++NGLCK  ++  A  LL  ML   +VPD +TYN L++G CK G      
Sbjct: 249 VNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSAL 308

Query: 436 KLQSE---KGLVSDYACYTSLV 454
            L +E   +G  +D   YTSL+
Sbjct: 309 NLMNEMHHRGQPADVVTYTSLL 330


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 195/377 (51%), Gaps = 37/377 (9%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  L+++D     G+ P V+ +N++++ LCK G++++A+ + ++   RG      +FNT
Sbjct: 210 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 269

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI   C    L+E   L   +   G+ PDVYT++ LIN LCK      A  L  EM   G
Sbjct: 270 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 329

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEAR 260
            TP++V + TLID  C  G++  A D+                             +EA 
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 389

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++ D+M   G++ + IT+  L+DG CK+  ++ A ++  +MI  G++ +N+ + ++++ +
Sbjct: 390 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 449

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+ G + +A  +L  M   G + D  TY  +I+  CK G T+   ++L+ MR  G  P  
Sbjct: 450 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 509

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP--EDFDKL- 437
           + YN ++  L +   +++A  L   M ++G  PD +TY I+  G C+ G P  E FD + 
Sbjct: 510 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFML 569

Query: 438 -QSEKGLVSDYACYTSL 453
              +KG + +++ +  L
Sbjct: 570 EMVDKGFIPEFSSFRML 586



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 7/302 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY FN+L++ LCK G    A  +F+E    G     V++NTLI+  C    L + 
Sbjct: 294 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 353

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME +G      TY+ +I+GLCK+ R+++AE +  +M  +G++ N + F TLIDG
Sbjct: 354 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 413

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ +ID      +A +++++M + GL P+ ITY  +L  +CK+GD++ A DI + M  
Sbjct: 414 LCKDKKID------DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 467

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G E+D V +  LI+G C+ G+   A ++LR M   G++P    Y  V+    +  + + 
Sbjct: 468 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRD 527

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-QLKNANMLLDTMLDLGVVPDDITYNILL 422
              L +EM   G  P   TY  +  GLC+ G  +K A   +  M+D G +P+  ++ +L 
Sbjct: 528 ALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLA 587

Query: 423 EG 424
           EG
Sbjct: 588 EG 589



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 174/342 (50%), Gaps = 11/342 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+   G  P V  FN LM  LC+  +++ A ++ +E   RG+     +F TL+ G  +
Sbjct: 77  YSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVE 136

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +++   R+K+ M   G      T + LING CK  R++DA   + +    G  P+ + 
Sbjct: 137 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQIT 196

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T ++G C+N  +        A K++D M   G +PD  TY I+++  CK G LE A  
Sbjct: 197 YNTFVNGLCQNDHVG------HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 250

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I  +M+ RG   D   F  LI+  C G ++ EA  + R++   G+ PD  T+ ++I+  C
Sbjct: 251 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 310

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD     RL +EM++ G  P   TYN L++ LC  G+L  A  LL  M   G     I
Sbjct: 311 KVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTI 370

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           TYN +++G CK    E+    FD++  + G+  +   + +L+
Sbjct: 371 TYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLI 411



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 170/342 (49%), Gaps = 29/342 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G S +    NVL++  CK G+++DA     +    G     +++NT +NG C+  +
Sbjct: 150 MLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDH 209

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +    ++  VM   G  PDV+TY+ ++N LCK  +L++A+ +L++M +RG  P+   F T
Sbjct: 210 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 269

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LI   C   R++ A                             GD   A ++ +EM  +G
Sbjct: 270 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 329

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             PD++TY  L+D  C  G L  ALD+ K+M   G     + +  +I G C+  ++ EAE
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 389

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  +M   G+  +  T+  +ID  CK+      F L+ +M S+G  P   TYN+++   
Sbjct: 390 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 449

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           CK G +K A  +L+TM   G   D +TY  L+ G CK G  +
Sbjct: 450 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 491



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 153/296 (51%), Gaps = 7/296 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +   P + L  + E+ + G +P    +N L+  LC  GK+  A  +  +    G
Sbjct: 305 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 364

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + +++NT+I+G CK   ++E   +   M+  G+  +  T++ LI+GLCK+ ++DDA 
Sbjct: 365 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 424

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+++M   GL PN++ + +++  +CK       GD+K+A  I++ M  NG   D +TY 
Sbjct: 425 ELINQMISEGLQPNNITYNSILTHYCKQ------GDIKKAADILETMTANGFEVDVVTYG 478

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G CK G  + AL + + M  +G+     A+  ++    R   + +A  + REM +V
Sbjct: 479 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 538

Query: 340 GLKPDDATYTMVIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           G  PD  TY +V    C+  G  K  F  + EM   G +P   ++  L  GL   G
Sbjct: 539 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 594



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 147/269 (54%), Gaps = 9/269 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G++ D   Y+ L+N L + +++   E +  EM  RG+ P+ V F TL+   C+      A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCR------A 102

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
             ++ A  +++EM + G+ PD+ T+T L+ GF +EG +E+AL ++  M++ G     V  
Sbjct: 103 HQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTV 162

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI+G+C+ G+V +A   +++ +  G +PD  TY   ++  C+N       +++  M  
Sbjct: 163 NVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 222

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE- 432
           +GH P V TYN ++N LCK+GQL+ A  +L+ M+D G +PD  T+N L+   C     E 
Sbjct: 223 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 282

Query: 433 --DFDKLQSEKGLVSDYACYTSLVSKSSK 459
             D  +  + KG+  D   +  L++   K
Sbjct: 283 ALDLARQVTVKGVSPDVYTFNILINALCK 311



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 18/202 (8%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            ++T++  L   K    A +L++ ++S+ G+  +   + SIL    TH            
Sbjct: 406 TFNTLIDGLCKDKKIDDAFELINQMISE-GLQPNNITYNSIL----TH------------ 448

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y   G +  A      +  + F +       LI+ + +     V L     +   G  P+
Sbjct: 449 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPT 508

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN-LDEGFRLK 187
              +N ++  L +   I+DA  +F E  + G    A+++  +  G C+    + E F   
Sbjct: 509 PKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFM 568

Query: 188 SVMEGSGMRPDVYTYSALINGL 209
             M   G  P+  ++  L  GL
Sbjct: 569 LEMVDKGFIPEFSSFRMLAEGL 590


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 202/362 (55%), Gaps = 35/362 (9%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+V+NVL+  LCKE +I+DA+ +F E   R L    V+FNTLI+G+CKA  +D    L
Sbjct: 99  PNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGL 158

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M+   + P + T+++L++GLCK  R+++A  +L+E+   G  P+   ++ + DG  K
Sbjct: 159 RERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLK 218

Query: 247 NG------------------RID------------MAGDMKEARKIVDEMCTNGLNPDKI 276
           +                   +ID              G +++A +++  +  +GL P ++
Sbjct: 219 SDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEV 278

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  +++G+C+ GD++ A+   ++M  RG+  + +AF ++I  FC    + +AE  +++M
Sbjct: 279 IYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKM 338

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +  G+ P   TY ++ID + +       F++L+EM  +G  P V +Y +L+N LCK G++
Sbjct: 339 VGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKI 398

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTS 452
             A M+L  M+  GV+P+   YN+L++G C  G   +    FD++ S+ G+ +    Y S
Sbjct: 399 LEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEM-SKNGIGATIVTYNS 457

Query: 453 LV 454
           L+
Sbjct: 458 LI 459



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 179/337 (53%), Gaps = 8/337 (2%)

Query: 91  RIPARG-CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
           R+P+ G  R +++ ++ +      L  + E++  G+ P   V+   M    K G +K A 
Sbjct: 27  RLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAM 86

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            +F+   +R +      +N LI G CK K + +  +L   M    + P+  T++ LI+G 
Sbjct: 87  ELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGY 146

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           CK   +D A  L   M +  + P+ + F +L+ G CK  RI+      EAR +++E+  N
Sbjct: 147 CKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIE------EARCMLNEIKCN 200

Query: 270 GLNPDKITYTILLDGFCKEGD-LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           G  PD  TY+I+ DG  K  D   +ALD+ +E I +G+++DN   + L++G C+ GKV +
Sbjct: 201 GFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEK 260

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           AE +L+ +++ GL P +  Y  +++ +C+ GD       +++M S G  P    +N++++
Sbjct: 261 AEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVID 320

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
             C+   +  A   +  M+  G+ P   TYNIL++G+
Sbjct: 321 KFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGY 357



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 164/317 (51%), Gaps = 6/317 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y E +  G     Y  ++L++ LCKEGK++ A+ V     + GL    V +NT++N
Sbjct: 226 ALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVN 285

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C+  ++D        ME  G+RP+   ++++I+  C+   +D AE  + +M  +G+ P
Sbjct: 286 GYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAP 345

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   +  LIDG+   GR+ +        +I++EM  NG  P+ I+Y  L++  CK+G + 
Sbjct: 346 SVETYNILIDGY---GRLCV---FSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKIL 399

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  + ++M+ RG+  +   +  LI G C  GK+ EA R   EM K G+     TY  +I
Sbjct: 400 EAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLI 459

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              CK G  K    +   + S GH P V TYN+L++G    G  +    L +TM  LG+ 
Sbjct: 460 KGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLK 519

Query: 413 PDDITYNILLEGHCKHG 429
           P   T++ L+ G  K G
Sbjct: 520 PTINTFHPLISGCSKEG 536



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 180/371 (48%), Gaps = 8/371 (2%)

Query: 57  LPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           +PG V+ + ++  Y  +G +D AI     +     R        +ID+     +      
Sbjct: 274 VPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEE 333

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +  +++  G +PSV  +N+L+    +         + +E  + G     +S+ +LIN  C
Sbjct: 334 WVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLC 393

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E   +   M G G+ P+   Y+ LI+G C   +L +A     EM + G+    V
Sbjct: 394 KDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIV 453

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + +LI G CK G+      +KEA ++   + + G  PD ITY  L+ G+   G+ +  L
Sbjct: 454 TYNSLIKGLCKMGK------LKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCL 507

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ + M K G++     F  LISG  + G +   E +  EML++ L PD   Y  +I C+
Sbjct: 508 ELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCY 566

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            + G  +  F L KEM   G  P  +TYN+L+ G  K G+L     L+D M   G++P+ 
Sbjct: 567 QETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEA 626

Query: 416 ITYNILLEGHC 426
            TY++L++GHC
Sbjct: 627 DTYSLLIQGHC 637



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 184/397 (46%), Gaps = 28/397 (7%)

Query: 43  ASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A L    +E+RG     +  ++++  + ++  +D A +  + +              LID
Sbjct: 296 AILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILID 355

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              R  + +       E+ + G  P+V  +  L++ LCK+GKI +A+MV  +   RG+  
Sbjct: 356 GYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLP 415

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
            A  +N LI+G C    L E  R    M  +G+   + TY++LI GLCK  +L +AE + 
Sbjct: 416 NANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMF 475

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRID------------------------MAGDMKE 258
             +   G  P+ + + +LI G+   G                           ++G  KE
Sbjct: 476 FLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKE 535

Query: 259 ARKI----VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             K+     +EM    L+PD++ Y  ++  + + G ++ A  ++KEM+  G+  DN  + 
Sbjct: 536 GIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYN 595

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           +LI G  + GK+ E + ++ +M   GL P+  TY+++I   C   D    +   +EM  +
Sbjct: 596 SLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLEN 655

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           G LP V   N L  GL K G+L+ A  +   M+  G+
Sbjct: 656 GFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGM 692



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 101/190 (53%), Gaps = 5/190 (2%)

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   G  PDK+ Y   +    K GDL+ A+++ + M +R +  +   +  LI G C+  
Sbjct: 56  EMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEK 115

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++ +AE++  EM    L P+  T+  +ID +CK G+      L + M+ +   P++ T+N
Sbjct: 116 RIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFN 175

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH----GNPEDFDKLQSE 440
           +L++GLCK  +++ A  +L+ +   G VPD  TY+I+ +G  K     G   D  +    
Sbjct: 176 SLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIG 235

Query: 441 KGL-VSDYAC 449
           KG+ + +Y C
Sbjct: 236 KGVKIDNYTC 245



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 7/194 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  Y  +   G  P++  F+ L+    KEG IK  + +F+E  +  L    V +N +I+ 
Sbjct: 507 LELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHC 565

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           + +  ++ + F L+  M   G+RPD  TY++LI G  KE +L + + L+ +M  +GL P 
Sbjct: 566 YQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPE 625

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              ++ LI GHC     D+  D   A     EM  NG  P+      L  G  K+G L+ 
Sbjct: 626 ADTYSLLIQGHC-----DLK-DFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQE 679

Query: 294 ALDIRKEMIKRGIE 307
           A  I  EMI  G++
Sbjct: 680 AQSICSEMIANGMD 693


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 169/324 (52%), Gaps = 6/324 (1%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + ++L  G SPSV  +++L+   CK    + A ++ DE   +G     V++N LIN 
Sbjct: 182 LAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINA 241

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C   ++DE   + S +   G +PD  TY+ ++  LC   R  + E L  EM      P+
Sbjct: 242 MCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPD 301

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           +V F T++   C+ G +D       A K+VD M  +G  PD +TY+ +LDG C  G ++ 
Sbjct: 302 EVTFNTIVTSLCQQGLVD------RAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDD 355

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+++   +   G + D +A+T ++ G C   +   AE ++ EM+     PD+ T+  VI 
Sbjct: 356 AVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIA 415

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C+ G      +++++M  +G  P + TYN++++GLC    + +A  LL  +   G  P
Sbjct: 416 SLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKP 475

Query: 414 DDITYNILLEGHCKHGNPEDFDKL 437
           D +T+N LL+G C     ED ++L
Sbjct: 476 DIVTFNTLLKGLCSVDRWEDAEQL 499



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 167/312 (53%), Gaps = 12/312 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V   N+L+ +LC  G++ DA+ VF   G     AT V++NT++NG+C+A  +++  RL S
Sbjct: 98  VVPCNILIKRLCSGGRVADAERVFATLGA---SATVVTYNTMVNGYCRAGRIEDARRLIS 154

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
              G    PD +T++ LI  LC   R+ DA  +  +M  RG +P+ V ++ L+D  CK  
Sbjct: 155 ---GMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCK-- 209

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
               A   ++A  ++DEM   G  PD +TY +L++  C EGD++ AL+I  ++   G + 
Sbjct: 210 ----ASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKP 265

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V +T ++   C   +  E E +  EM      PD+ T+  ++   C+ G      +++
Sbjct: 266 DAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVV 325

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G +P + TY+++++GLC  G++ +A  LL  +   G  PD I Y  +L+G C  
Sbjct: 326 DHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSI 385

Query: 429 GNPEDFDKLQSE 440
              E  ++L +E
Sbjct: 386 EQWEHAEELMAE 397



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 167/342 (48%), Gaps = 11/342 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+     +P    FN ++  LC++G +  A  V D   + G     V+++++++G C
Sbjct: 289 LFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLC 348

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +D+   L S ++  G +PD   Y+ ++ GLC   + + AE L+ EM      P++V
Sbjct: 349 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEV 408

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F T+I   C+ G +D       A K+V++M  NG NPD +TY  ++DG C E  ++ A+
Sbjct: 409 TFNTVIASLCQKGLVD------RAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAM 462

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++   +   G + D V F  L+ G C   +  +AE+++  M+     PD  T+  VI   
Sbjct: 463 ELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G        LK M  +G +P   TYN +++ L K G+ + A  LL  M +    PD 
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTN--GTPDL 580

Query: 416 ITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           ITYN ++    K G  E   D  ++    GL  D   Y SL 
Sbjct: 581 ITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLA 622



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 12/364 (3%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           +LD L     D+G +DDA++    L+ +  +        ++  +              E+
Sbjct: 343 ILDGL----CDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEM 398

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +     P    FN ++  LC++G +  A  V ++  + G +   V++N++I+G C  + +
Sbjct: 399 VCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCI 458

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D+   L S ++  G +PD+ T++ L+ GLC  +R +DAE L+  M      P+   F T+
Sbjct: 459 DDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTV 518

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I   C+ G +  A    E  KI+ E   NG  P++ TY I++D   K G  + AL +   
Sbjct: 519 ITSLCQKGLLLQA---IETLKIMAE---NGCIPNQSTYNIVVDALLKAGKTQEALKLLSG 572

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M     +L  + +  +IS   + GK+ EA  +LR M+  GL PD  TY  +    C+   
Sbjct: 573 MTNGTPDL--ITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDG 630

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
           T    R+L  ++  G  P    YN ++ G C++ +   A      M+  G +PD+ TY I
Sbjct: 631 TDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYII 690

Query: 421 LLEG 424
           LLE 
Sbjct: 691 LLEA 694



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + + L  V    LI   C GG+V +AER+   +   G      TY  +++ +C+ G  + 
Sbjct: 92  KCLPLPVVPCNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIED 148

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             RL+  M      P   T+N L+  LC  G++ +A  + D ML  G  P  +TY+ILL+
Sbjct: 149 ARRLISGM---PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLD 205

Query: 424 GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             CK           D++++ KG   D   Y  L++
Sbjct: 206 ATCKASGYRQAMVLLDEMRA-KGCEPDIVTYNVLIN 240



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 46/107 (42%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP    +  L + +C+E     A  +       GL   A  +N ++ G C+    D  
Sbjct: 610 GLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIA 669

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
               + M  SG  PD  TY  L+  L  E  LD+A+ LL  +C  G+
Sbjct: 670 IDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 197/395 (49%), Gaps = 46/395 (11%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           DAL+      GF  D+  C  ++R    +   R    L  RM     P            
Sbjct: 201 DALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTP------------ 248

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
               P++  ++  +  LC+ G +K A  V +E   +GL     +  +LI+G CK   ++ 
Sbjct: 249 ----PNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMER 304

Query: 183 GFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
            FRL   +++ S  +P+V+TY+ +I G CKE +L  AE+LL  M E+GL PN   +TTLI
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
            GHCK G  D A                             G ++EA K++    + GL+
Sbjct: 365 HGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLH 424

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            DK+TYTIL+   CK+G +  ALD+ K+M ++    D   +T +I+ +C+  ++ +++++
Sbjct: 425 LDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQL 484

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             + L +GL P   TYT +I  +C+ G   +  ++ + M   G LP   TY AL++ LCK
Sbjct: 485 FDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCK 544

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             +L+ A  L +TMLD  +VP D+T   L   +C+
Sbjct: 545 ESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCR 579



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 171/340 (50%), Gaps = 15/340 (4%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            V++   C++G+ ++   +F    + G     V+++  I+G C+   + + F +   M G
Sbjct: 220 TVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVG 279

Query: 193 SGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            G++P+VYT+++LI+GLCK   ++ A  L L  +      PN   +T +I G+CK G+  
Sbjct: 280 KGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGK-- 337

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
               +  A  ++  M   GL P+  TYT L+ G CK G  + A ++  +M   G   +  
Sbjct: 338 ----LARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIY 393

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            + A+I GFC+ GK+ EA ++LR     GL  D  TYT++I   CK G       L K+M
Sbjct: 394 TYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQM 453

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                 P + TY  ++   C+  Q++ +  L D  L +G+VP   TY  ++ G+C+ G  
Sbjct: 454 AEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKL 513

Query: 432 ED----FDKLQSEKGLVSDYACYTSLVS---KSSKYRQKR 464
                 F+++  + G + D   Y +L+S   K S+  + R
Sbjct: 514 TSALKVFERM-VQHGCLPDSITYGALISSLCKESRLEEAR 552



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 17/212 (8%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T  L  + ++ +    P ++ +  ++   C++ +++ +Q +FD+    GL  T  ++ ++
Sbjct: 444 TCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSM 503

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I G+C+   L    ++   M   G  PD  TY ALI+ LCKE+RL++A  L   M ++ L
Sbjct: 504 IAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHL 563

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE-- 288
            P DV   TL   +C+  +I +A         +D +       DK       D   ++  
Sbjct: 564 VPCDVTRVTLAYEYCRRDKITIAVS------FLDRL-------DKRQQAHTADALVRKLS 610

Query: 289 --GDLESALDIRKEMIKRGIELDNVAFTALIS 318
             G+L++A    K ++ +   +D+  +T+ I+
Sbjct: 611 TVGNLDAASLFLKNVLDKHYAVDHATYTSFIN 642


>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 228/469 (48%), Gaps = 35/469 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL--ETRGTHLP 58
           P  + +L +   M+  L  H     A  LL  + S++ + SS  +  S++   +    + 
Sbjct: 74  PSCKHSLQSSWKMILILTKHNHFKTAHQLLDKL-SQRELLSSPLVLRSLVGGVSEDPEVL 132

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
             V   LMI Y   G ++D+I  F  +     +   + C  L++ +++  L       + 
Sbjct: 133 SHVFSWLMIFYAKSGMINDSIAVFEQIMSCGLKPHLQACTVLLNSLVKERLTDTVWKIFK 192

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G   +++V+NVL+H   K G  + A+ +  E  ++G+     ++NTLI+ +CK  
Sbjct: 193 KMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKS 252

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIF 237
              E   ++  ME SG+ PD+ TY++LI+G  +E R+ +A  L  ++  +G+   N V +
Sbjct: 253 MHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRKI--KGVVMANHVTY 310

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
           TTLIDG+C+   ID A                             G ++EA +++ EM  
Sbjct: 311 TTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSV 370

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             + PD IT   L++ +CK  D+ SA+ ++K+MI+ G++LD  ++ ALI GFC+  ++  
Sbjct: 371 KKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELDN 430

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+  L  M++ GL P  + Y+ ++D F          +L +E    G  P V  Y  L+ 
Sbjct: 431 AKEELFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIR 490

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            +CK  Q+  A +L ++M   G++ D + Y  +   + + G   D   L
Sbjct: 491 RICKLEQVDYAKVLFESMEKKGLMGDSVIYTTMAYAYWRTGKVTDASAL 539



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 34/294 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P +  +N L+H   +EG++++A  +F +  K  + A  V++ TLI+G+C+  ++DE 
Sbjct: 268 GVAPDIVTYNSLIHGFSREGRMREATRLFRKI-KGVVMANHVTYTTLIDGYCRMNDIDEA 326

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL+ VME  G  P V TY++++  LC++ R+ +A  LL EM  + + P+++   TLI+ 
Sbjct: 327 LRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDNITCNTLINA 386

Query: 244 HCKNGRIDMAGDMKEARKIVDE-------------------------------MCTNGLN 272
           +CK    DM   +K  +K+++                                M   GL+
Sbjct: 387 YCKIE--DMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELDNAKEELFSMIEKGLS 444

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P    Y+ L+DGF  +   +    + +E  KRG+  D   +  LI   C+  +V  A+ +
Sbjct: 445 PGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICKLEQVDYAKVL 504

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
              M K GL  D   YT +   + + G       L   M +   +  ++ Y +L
Sbjct: 505 FESMEKKGLMGDSVIYTTMAYAYWRTGKVTDASALFDVMYNRRLMVNLKLYKSL 558



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 52/123 (42%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             +++ G SP    ++ L+     + K  +   + +EF KRGL      +  LI   CK 
Sbjct: 436 FSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICKL 495

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + +D    L   ME  G+  D   Y+ +     +  ++ DA  L   M  R L  N  ++
Sbjct: 496 EQVDYAKVLFESMEKKGLMGDSVIYTTMAYAYWRTGKVTDASALFDVMYNRRLMVNLKLY 555

Query: 238 TTL 240
            +L
Sbjct: 556 KSL 558


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 178/340 (52%), Gaps = 29/340 (8%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+LD G++P+   F +LM    K+G I++A  +F       +  T  +   +I G CK
Sbjct: 307 YKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCK 366

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A    EG  L +     G  P    Y+ +I+G  KE  ++ A  +  EMCE G+TP+ V 
Sbjct: 367 AGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVT 426

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           +T+LIDG CK   ID+A                              DMK A ++++E+ 
Sbjct: 427 YTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELR 486

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GL+P++  Y  ++ GF    ++E A+D+ K+M+  GI  D   +T+LI G  + G+++
Sbjct: 487 GAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLL 546

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            A  +  EML  G+ PDD  +T++I+  C  G  +   ++L++M     +P+V  YN L+
Sbjct: 547 YASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 606

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            G  K G L+ A  L D MLD G+VPD+ITY+IL+ G  K
Sbjct: 607 AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFK 646



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 187/408 (45%), Gaps = 78/408 (19%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G S ++ V   LM   C +G ++ A ++ +E  + GL    V+++ LI+G CK  
Sbjct: 135 DMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNG 194

Query: 179 NLDEGFRLKSVMEGSGMRPDVY----------------------------------TYSA 204
           N+++ F   S M+  G+R  VY                                  T++ 
Sbjct: 195 NIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNT 254

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           L++ LCKE ++++A  L  E+  +G++PN V +  +I GHC+   I+ A       K+  
Sbjct: 255 LLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAAC------KVYK 308

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM  NG  P+ +T+TIL+DG+ K+GD+E+A  I   M    I   +     +I G C+ G
Sbjct: 309 EMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAG 368

Query: 325 KVVE-----------------------------------AERMLREMLKVGLKPDDATYT 349
           +  E                                   A  + REM +VG+ P   TYT
Sbjct: 369 RSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 428

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +ID FCK  +     +LL +M+  G    ++ Y  L++G CK   +K+A+ LL+ +   
Sbjct: 429 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 488

Query: 410 GVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           G+ P+   YN ++ G     N E   D  K    +G+  D   YTSL+
Sbjct: 489 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLI 536



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 186/401 (46%), Gaps = 46/401 (11%)

Query: 93  PARGC-RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           P+  C   L+  M+R N+       + ++L  G +   +  +V++    KEG I +A+  
Sbjct: 3   PSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQH 62

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           F +   RG+     +++  ++  C   N      L   M  +G  P   T++++I    K
Sbjct: 63  FLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVK 122

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           E  + +A  L  +M   G + N  + T+L+ G+C      M G+++ A  +V+E+  +GL
Sbjct: 123 EGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYC------MQGNLRSALVLVNEISESGL 176

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE------------------------ 307
            P+K+TY++L+DG CK G++E A +   EM  +GI                         
Sbjct: 177 VPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFT 236

Query: 308 ---------LDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
                    L NV  F  L+S  C+ GK+ EA  +  E++  G+ P+  +Y  +I   C+
Sbjct: 237 MFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCR 296

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
             +     ++ KEM  +G  P   T+  LM+G  K G ++NA  +   M D  ++P D T
Sbjct: 297 KDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTT 356

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             I+++G CK G   +    F+K  S+ G V     Y +++
Sbjct: 357 LGIIIKGLCKAGRSFEGRDLFNKFVSQ-GFVPTCMPYNTII 396



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 135/254 (53%), Gaps = 6/254 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID  ++     +    Y E+ + G +PS   +  L+   CK   I  A  + ++  ++G
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 454

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     ++ TLI+G CK +++     L + + G+G+ P+ + Y+++I G    N +++A 
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI 514

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M   G+  +   +T+LIDG  K+GR+  A D      I  EM + G+ PD   +T
Sbjct: 515 DLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD------IHTEMLSKGILPDDRAHT 568

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +L++G C +G  E+A  I ++M  + +    + +  LI+G  + G + EA R+  EML  
Sbjct: 569 VLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDR 628

Query: 340 GLKPDDATYTMVID 353
           GL PD+ TY ++++
Sbjct: 629 GLVPDNITYDILVN 642



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 174/405 (42%), Gaps = 92/405 (22%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
            +  ++T++ +L      ++A +L   +++K G+  +   + +I+     H     ++A 
Sbjct: 248 NVFTFNTLLSWLCKEGKMNEACNLWDEVIAK-GISPNVVSYNNIILG---HCRKDNINAA 303

Query: 66  MIVY---VDLGFLDDAIQCFRLLRKHYFRI-PARGCRCLIDRMMRTN-LPT-VTLGFYLE 119
             VY   +D GF  +A+  F +L   YF+         +  RM   N LPT  TLG  ++
Sbjct: 304 CKVYKEMLDNGFTPNAVT-FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIK 362

Query: 120 -----------------ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
                             +  G+ P+   +N ++    KEG I  A  V+ E  + G+  
Sbjct: 363 GLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITP 422

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V++ +LI+G CK  N+D   +L + M+  G++ D+  Y  LI+G CK   +  A  LL
Sbjct: 423 STVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELL 482

Query: 223 HEMCERGLTPNDVIF-----------------------------------TTLIDGHCKN 247
           +E+   GL+PN  I+                                   T+LIDG  K+
Sbjct: 483 NELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKS 542

Query: 248 GRIDMAGDM-----------------------------KEARKIVDEMCTNGLNPDKITY 278
           GR+  A D+                             + ARKI+++M    + P  + Y
Sbjct: 543 GRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIY 602

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
             L+ G  KEG+L+ A  +  EM+ RG+  DN+ +  L++G  +G
Sbjct: 603 NTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKG 647



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 66/326 (20%)

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           M P +   + L+  + ++N   +A  L ++M   G+T +      ++    K G I  A 
Sbjct: 1   MTPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAE 60

Query: 255 DM------------KEARKI-----------------VDEMCTNGLNPDKITYTILLDGF 285
                         +EA  I                 + EM   G  P + T+T ++   
Sbjct: 61  QHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITAC 120

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            KEG++  AL ++ +M+  G  ++    T+L+ G+C  G +  A  ++ E+ + GL P+ 
Sbjct: 121 VKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNK 180

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDG------------------------------ 375
            TY+++ID  CKNG+ +  F    EM++ G                              
Sbjct: 181 VTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFND 240

Query: 376 ----HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                L  V T+N L++ LCK G++  A  L D ++  G+ P+ ++YN ++ GHC+  N 
Sbjct: 241 ALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNI 300

Query: 432 EDFDKLQSE---KGLVSDYACYTSLV 454
               K+  E    G   +   +T L+
Sbjct: 301 NAACKVYKEMLDNGFTPNAVTFTILM 326



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 17/206 (8%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
            ++ + AY T++      +    A +LL+ +   +G G S + F              + 
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNEL---RGAGLSPNRF--------------IY 497

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           ++++  + ++  +++AI  ++ +         +    LID ++++         + E+L 
Sbjct: 498 NSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLS 557

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P      VL++ LC +G+ ++A+ + ++   + +  + + +NTLI GH K  NL E
Sbjct: 558 KGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQE 617

Query: 183 GFRLKSVMEGSGMRPDVYTYSALING 208
            FRL   M   G+ PD  TY  L+NG
Sbjct: 618 AFRLHDEMLDRGLVPDNITYDILVNG 643


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 175/315 (55%), Gaps = 6/315 (1%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   +G   ++   G  P+V  ++ LM+ LCK G+  +A+ +FD   KRGL     ++ T
Sbjct: 287 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 346

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G+     L E   L  +M  +G++PD + ++ LI    K+ ++D A L+  +M + G
Sbjct: 347 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHG 406

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN V + T+ID  CK+G +D      +A    ++M   GL P+ I YT L+ G C   
Sbjct: 407 LNPNVVCYGTVIDVLCKSGSVD------DAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             + A ++  EM+ RGI L+ + F ++I   C+ G+V+E+E++   M+++G+KPD  TY 
Sbjct: 461 KWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYN 520

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +ID  C  G      +LL  M S G  P + TY  L+NG C+  ++ +A  L   M+  
Sbjct: 521 TLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS 580

Query: 410 GVVPDDITYNILLEG 424
           GV P+ ITYNI+L+G
Sbjct: 581 GVSPNIITYNIILQG 595



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 184/371 (49%), Gaps = 44/371 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  +VFN+L+    K+ K+  A +VF +  + GL+   V + T+I+  CK+ ++D+ 
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M   G+ P++  Y++LI+GLC  ++ D AE L+ EM +RG+  N + F ++ID 
Sbjct: 431 MLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ PD ITY  L+DG C  G ++ A  +   M+ 
Sbjct: 491 HCKEGRV------IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS 544

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+CR  ++ +A  + +EM+  G+ P+  TY +++        T  
Sbjct: 545 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 604

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-------------------QLKNANMLLD 404
              L   +   G    + TYN +++GLCK+                    + +  N+++ 
Sbjct: 605 AKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 664

Query: 405 TML---------DL-------GVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVS 445
            +L         DL       G+VPD  TY+++ E   + G+ E+ D L     E G  +
Sbjct: 665 ALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSA 724

Query: 446 DYACYTSLVSK 456
           D     S+V K
Sbjct: 725 DSRMLNSIVRK 735



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 170/334 (50%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N +++   KEG    A   + E   RG+    V+++++I   CKA+ +D+ 
Sbjct: 196 GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKA 255

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M  +G+ PD  TY+++++G C   +  +A   L +M   G+ PN V +++L++ 
Sbjct: 256 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNY 315

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKNGR        EARKI D M   GL PD  TY  LL G+  +G L     +   M++
Sbjct: 316 LCKNGR------STEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 369

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI+ D+  F  LI  + +  KV +A  +  +M + GL P+   Y  VID  CK+G    
Sbjct: 370 NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDD 429

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                ++M  +G  P +  Y +L++GLC   +   A  L+  MLD G+  + I +N +++
Sbjct: 430 AMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489

Query: 424 GHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
            HCK G   + +K   L    G+  D   Y +L+
Sbjct: 490 SHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 169/346 (48%), Gaps = 29/346 (8%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+LD G  P V  ++ ++  LCK   +  A  V +   K G+    +++N++++G+C 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 283

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           +    E       M   G+ P+V TYS+L+N LCK  R  +A  +   M +RGL P+   
Sbjct: 284 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIAT 343

Query: 237 FTTLIDGHCKNGR-IDMAG----------------------------DMKEARKIVDEMC 267
           + TL+ G+   G  ++M                               + +A  +  +M 
Sbjct: 344 YRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMR 403

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
            +GLNP+ + Y  ++D  CK G ++ A+   ++MI  G+  + + +T+LI G C   K  
Sbjct: 404 QHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWD 463

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +AE ++ EML  G+  +   +  +ID  CK G      +L   M   G  P + TYN L+
Sbjct: 464 KAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +G C  G++  A  LL +M+ +GV PD +TY  L+ G+C+    +D
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 569



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 14/318 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +  T  ++  LI   C
Sbjct: 45  ELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYAILIGCCC 103

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
           +A  LD GF     +   G R D  T++ L+ GLC + R  DA +++L  M E G  P+ 
Sbjct: 104 RAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDV 163

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GLNPDKITYTILLDGFCKEGDL 291
             +  L+ G C   R       +EA +++  M  +   G  PD ++Y  +L+GF KEGD 
Sbjct: 164 FSYNNLLKGLCDENR------SQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDS 217

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A     EM+ RGI  D V ++++I+  C+   + +A  +L  M+K G+ PD  TY  +
Sbjct: 218 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 277

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +  +C +G  K     LK+MRSDG  P V TY++LMN LCK+G+   A  + D+M   G+
Sbjct: 278 LHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL 337

Query: 412 VPDDITYNILLEGHCKHG 429
            PD  TY  LL+G+   G
Sbjct: 338 EPDIATYRTLLQGYATKG 355



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 203/448 (45%), Gaps = 61/448 (13%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE---TRGTHLP-------- 58
           YS+++++L  +   ++AR +   + +K+G+    + + ++L+   T+G  +         
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 59  ---GL-----VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G+     V + L+  Y     +D A+  F  +R+H           +ID + ++   
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D G +P++ V+  L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++PD+ TY+ LI+G C   ++D+A  LL  M   G+
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL-------- 282
            P+ V + TLI+G+C+  R+D      +A  +  EM ++G++P+ ITY I+L        
Sbjct: 548 KPDIVTYGTLINGYCRVSRMD------DALALFKEMVSSGVSPNIITYNIILQGLFHTRR 601

Query: 283 ---------------------------DGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
                                       G CK    + AL + + +    ++L+   F  
Sbjct: 602 TAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 661

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I    + G++ EA+ +       GL PD  TY+++ +   + G  +    L   M  +G
Sbjct: 662 MIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG 721

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLL 403
                   N+++  L + G +  A   L
Sbjct: 722 CSADSRMLNSIVRKLLQRGDITRAGTYL 749


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 179/340 (52%), Gaps = 9/340 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+   G  P V  +N L+++ CK G +K+A  +  +  + GL  T +++NTLI+G+C+
Sbjct: 366 FAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCR 425

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +L E  RLK  M   G  PDV TY+ L+NG  K   L  A     EM  +GL P+   
Sbjct: 426 LGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFA 485

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T I          MA  ++E       M   G+ PD +TY +++DG CK G+L+ A  
Sbjct: 486 YNTRICAELTLSSTPMAFQLREV------MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKR 539

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           ++ +M+  G++ D + +T LI   C  G + EA ++L  M+  GL+P   TYT+++   C
Sbjct: 540 LKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCC 599

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           + G+  + +   ++M   G  P   TYN L++ LC  G+   A      ML+ G+ P+  
Sbjct: 600 RRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKY 659

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
           TY +L++G+C+ GN  D  +L  E    G+  DY  + +L
Sbjct: 660 TYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNAL 699



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 169/384 (44%), Gaps = 47/384 (12%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T+ L  +  +  +G +P V   N ++  L    +  D + V+ E  +  +  T V++NTL
Sbjct: 184 TLCLAAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTL 243

Query: 171 INGHCKAKNLDEGFRLKSVME--GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           ++   K    DE   L   ME  G G   +  T++ +I+ L +E  L++A  L+  M   
Sbjct: 244 LDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSM-RL 302

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
               +   +  LI    + G +      ++A  +  EM   G+ P  +TY  ++ G  K 
Sbjct: 303 SKKASSFTYNPLITALLERGFV------RKAEALQMEMENEGIMPTVVTYNAIIHGLLKC 356

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
              E+A     EM   G+  D + + +L++ +C+ G + EA  +L ++ + GL P   TY
Sbjct: 357 EQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTY 416

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +ID +C+ GD     RL +EM   G  P V TY  LMNG  K   L  A    D ML 
Sbjct: 417 NTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLS 476

Query: 409 -----------------------------------LGVVPDDITYNILLEGHCKHGNPED 433
                                               G+ PD +TYN++++G CK GN +D
Sbjct: 477 KGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKD 536

Query: 434 FDKLQSE---KGLVSDYACYTSLV 454
             +L+++    GL  D   YT L+
Sbjct: 537 AKRLKTKMVSDGLQPDCITYTCLI 560



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G++ ++LD G  P+   +NVL+H LC  G+   A   F E  +RGL     ++  LI+G+
Sbjct: 609 GWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGN 668

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           C+  N  +  RL   M  +G+ PD  T++AL  G 
Sbjct: 669 CREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 703


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 183/345 (53%), Gaps = 29/345 (8%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G+SP+  ++N LM+   K  +I  A M+++E  K+G+    ++FN L++GH K    +
Sbjct: 154 EMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREE 213

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +G RL   +   G+ PD   +   ++GLC   RLD+A   L +M E+GL+P+ + F ++I
Sbjct: 214 DGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVI 273

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
             + + G  D A                             G ++EA +++ +M   GL+
Sbjct: 274 AAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLS 333

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            + + +T+LLD F K GD+  A  +  EM +RGI  D VAF+A I G  + G V EA  +
Sbjct: 334 VNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNV 393

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             EML+ GL P++  Y  +I  FCK G      +L K MR  G LP + T N ++ GLCK
Sbjct: 394 FLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCK 453

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            G++++A  +   M   G+ PD ITYN L+ G+CK  +  + D L
Sbjct: 454 QGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNL 498



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 180/343 (52%), Gaps = 10/343 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P   +F++ +  LC  G++ +A     +  ++GL  + ++FN++I  + +A   D+ 
Sbjct: 226 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKA 285

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F    +M   G+ P   T S+L+ GL    RL +A  L+ +M E+GL+ N++ FT L+D 
Sbjct: 286 FEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDK 345

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G      D+  A+ +  EM   G+ PD + ++  +DG  K+G +E A ++  EM++
Sbjct: 346 FFKRG------DVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLR 399

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+  +N A+ +LI GFC+ GK+ EA ++ + M   GL PD  T  M+I   CK G  ++
Sbjct: 400 KGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRS 459

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +  +M   G  P + TYN L+NG CK   + NA+ L++ M   G  PD  TYNI + 
Sbjct: 460 AINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIH 519

Query: 424 GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           G C            D+L S   L   +AC  +L + +  + Q
Sbjct: 520 GFCSSRRMNRAVLMLDELVSAGILSFSFACPPTLNAHTKHFYQ 562



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 181/391 (46%), Gaps = 11/391 (2%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +GF   A++    +R+   R  A G   L   ++R          + +++  G  P  Y 
Sbjct: 1   MGF--QALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYT 58

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           F+ ++   C++G I   + +     K      A ++N +IN  C      +     ++M 
Sbjct: 59  FSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMI 118

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P V T++ +IN  CKE  + +A  L   + E G +PN +++ TL++G+ K   ID
Sbjct: 119 ERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREID 178

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A  + +EM   G+ PD IT+ IL+ G  K G  E    + K++   G+  D  
Sbjct: 179 ------QANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRS 232

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            F   +SG C  G++ EA   L +ML+ GL P    +  VI  + + G     F   K M
Sbjct: 233 LFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLM 292

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G  P+  T ++L+ GL  +G+L+ A  L+  M++ G+  +++ + +LL+   K G+ 
Sbjct: 293 VHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDV 352

Query: 432 EDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
                L  E   +G+  D   +++ +   SK
Sbjct: 353 VGAQSLWGEMERRGIFPDVVAFSAFIDGLSK 383


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 219/446 (49%), Gaps = 16/446 (3%)

Query: 16  FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGF 74
           F    +  S  R +L   +       +  LF  ++ +R   LP ++    L+ V   +  
Sbjct: 41  FCFWIRAFSSYRKILRNGLHNLQFNDALDLFTRMVHSRP--LPSIIDFTRLLSVIAKMNR 98

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRC--LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
            D  I  F   +     IP   C C  ++  +  ++ P     F  +++  G+ P +  F
Sbjct: 99  YDVVISLFE--QMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTF 156

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L++  C   +I+DA  +FD+    G     V++ TLI   CK ++L+    L + M  
Sbjct: 157 TSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGT 216

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G RP+V TY+AL+ GLC+  R  DA  LL +M +R + PN + FT LID   K      
Sbjct: 217 NGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVK------ 270

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            G + EA+++ + M    + PD  TY  L++G C  G L+ A  +   M + G   + V 
Sbjct: 271 VGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVI 330

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +T LI GFC+  +V +  ++  EM + G+  +  TYT++I  +C  G       +  +M 
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S    P + TYN L++GLC +G+++ A M+ + M    +  + +TY I+++G CK G  E
Sbjct: 391 SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450

Query: 433 D-FDKLQS--EKGLVSDYACYTSLVS 455
           D FD   S   KG+  +   YT+++S
Sbjct: 451 DAFDLFCSLFSKGMKPNVITYTTMIS 476



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 152/295 (51%), Gaps = 6/295 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N L+  LC+ G+  DA  +  +  KR +    ++F  LI+   K   L E 
Sbjct: 218 GSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEA 277

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L +VM    + PDV+TY +LINGLC    LD+A  + + M   G  PN+VI+TTLI G
Sbjct: 278 KELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHG 337

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ R++      +  KI  EM   G+  + ITYT+L+ G+C  G  + A ++  +M  
Sbjct: 338 FCKSKRVE------DGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSS 391

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R    D   +  L+ G C  GKV +A  +   M K  +  +  TYT++I   CK G  + 
Sbjct: 392 RRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVED 451

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            F L   + S G  P V TY  +++G C+ G +  A+ L   M + G +P++  Y
Sbjct: 452 AFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 20/213 (9%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           G LD+A Q F L+ ++       GC         LI    ++      +  + E+   G 
Sbjct: 307 GLLDEARQMFYLMERN-------GCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGV 359

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
             +   + VL+   C  G+   AQ VF++   R       ++N L++G C    +++   
Sbjct: 360 VANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALM 419

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M    M  ++ TY+ +I G+CK  +++DA  L   +  +G+ PN + +TT+I G C
Sbjct: 420 IFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFC 479

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           + G I       EA  +  +M  +G  P++  Y
Sbjct: 480 RRGLI------HEADSLFKKMKEDGFLPNESVY 506


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 168/317 (52%), Gaps = 6/317 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +  ++ +LCK  +I DA    +E   RG+   A  +N +++G C+ + ++E   L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    + P+V TY+ LINGLCK  R++ A  L  EM  +G  P +V + TLIDG CK
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                   D+  A+ + D+M  +   P+ +TYT L+DG  K G +++A ++   M+K+G+
Sbjct: 127 KK------DLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   ++ LI GFC+  +V EA ++L +M+  G+ P   TY ++++  C+    +  F+
Sbjct: 181 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFK 240

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L + M      P V TYN L+  LC H QL  A+ L   M+  G  PD ITY+ L  G  
Sbjct: 241 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLT 300

Query: 427 KHGNPEDFDKLQSEKGL 443
           + G   +  +L  +  L
Sbjct: 301 RAGKVHEAQELMEKMKL 317



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 9/293 (3%)

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
           A+++  ++   CK K +D+       M   G++PD + Y+ +++GLC+E ++++A LL  
Sbjct: 9   ALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFE 68

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           +M ++ + PN V + TLI+G CK  RI+ A ++        EM   G  P +++Y  L+D
Sbjct: 69  KMVKQRINPNVVTYNTLINGLCKAWRIETAYEL------FKEMAGKGYVPTEVSYNTLID 122

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           GFCK+ DL +A D+  +M++     + V +T LI G  + GKV  A  +L  M+K G+ P
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP 182

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           + ATY+ +ID FCK        +LL++M + G  P V TYN L+N LC+  +L++A  L 
Sbjct: 183 NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLF 242

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             M      P  +TYN LL   C H   +   +L +E   KG   D   Y +L
Sbjct: 243 RGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 295



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +++R+ +T      L    E+   G  P  +++N ++  LC+E K+++A+++F++  K+ 
Sbjct: 15  IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 74

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++   V++NTLING CKA  ++  + L   M G G  P   +Y+ LI+G CK+  L  A+
Sbjct: 75  INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 134

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  +M      PN V +TTLIDG  K+G++  A +      ++D M   G+ P+  TY+
Sbjct: 135 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAE------VLDGMVKKGVTPNVATYS 188

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DGFCK   ++ A  + ++M+ +GI    V +  L++  CR  K+ +A ++ R M + 
Sbjct: 189 CLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR 248

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              P   TY  ++   C +       RL  EM + G  P   TY+ L  GL + G++  A
Sbjct: 249 RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEA 308

Query: 400 NMLLDTM 406
             L++ M
Sbjct: 309 QELMEKM 315



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 25/193 (12%)

Query: 100 LIDRMMRTN-LPTVTLGFYL--------------EILD----YGYSPSVYVFNVLMHKLC 140
           + D+M+R+N +P V     L              E+LD     G +P+V  ++ L+   C
Sbjct: 136 VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC 195

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           K  ++ +A  + ++   +G+  T V++N L+N  C+A  L++ F+L   M      P V 
Sbjct: 196 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVV 255

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY+ L+  LC   +LD A  L  EM  +G  P+ + + TL  G      +  AG + EA+
Sbjct: 256 TYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWG------LTRAGKVHEAQ 309

Query: 261 KIVDEMCTNGLNP 273
           +++++M     NP
Sbjct: 310 ELMEKMKLTKRNP 322


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 10/326 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P++  FN L+   C+E  ++ A  +  +    G+ A  V++NTL++G CKA  
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L E  +L   M+ SG  PDV  YS+ + GLCK  ++ DA  +L +M +    PN V + T
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNT 262

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++DG CK+G+ID A +M E     D     G   + + Y+ ++DG CK G  + A  + +
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSD-----GCGLNVVGYSTVVDGLCKLGRTQEARSVME 317

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M + G   D V +++L++G C+ GK+ EA   +REM   G KP+  TY  ++   C  G
Sbjct: 318 AMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCG 377

Query: 360 DTKTGFRLLKEMRSDGHL-----PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
                 R+++EM S G       P+V TYNAL+ GLCK G++ +A      M   G  PD
Sbjct: 378 RLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPD 437

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE 440
            ++Y+ ++EG  + G     + + SE
Sbjct: 438 GVSYSTIVEGLARSGRALQAEMILSE 463



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 184/366 (50%), Gaps = 35/366 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   FN L++   K+G+  D + + +    R +    VS+N L+ G CK +   E 
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 184 FRLKSVMEGSGMR--PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
             L   M   G R  PD+ TYS L++G CK  +++++  LL E+  RGL P+ +++T ++
Sbjct: 65  EELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVV 124

Query: 242 DGHCKNGRID------------------------MAGDMKE-----ARKIVDEMCTNGLN 272
              CK+ R+                         ++G  +E     A  ++ +M  +G+ 
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVK 184

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            D +TY  L+DG CK G L+ A  + + M   G   D VA+++ + G C+ GKV++A ++
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQV 244

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM-RSDGHLPAVETYNALMNGLC 391
           L +M      P+  TY  ++D  CK+G   T   ++++M  SDG    V  Y+ +++GLC
Sbjct: 245 LEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLC 304

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
           K G+ + A  +++ M   G  PD +TY+ L+ G CK G  E+  +   E   +G   +  
Sbjct: 305 KLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAV 364

Query: 449 CYTSLV 454
            Y SLV
Sbjct: 365 TYCSLV 370



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 171/304 (56%), Gaps = 12/304 (3%)

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G    +V+FN L+NG  K     +  RL   M    ++P+V +Y+ L+ GLCK  R  
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH 62

Query: 217 DAELLLHEMCERG--LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +AE L+ +M  RG   TP+ V ++TL+ G+CK G+++      E+R+++ E+ + GL PD
Sbjct: 63  EAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVE------ESRELLKEVISRGLRPD 116

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + YT ++   CK   L  AL++ +EMI+ G     + F  LISG CR   +  A+ +L+
Sbjct: 117 ALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQ 176

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M   G+K D  TY  ++D  CK G  +   +LL+ M++ G  P V  Y++ + GLCK G
Sbjct: 177 KMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSG 236

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACY 450
           ++ +A+ +L+ M D    P+ +TYN +L+G CK G      E  +++ S  G   +   Y
Sbjct: 237 KVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296

Query: 451 TSLV 454
           +++V
Sbjct: 297 STVV 300



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/242 (35%), Positives = 136/242 (56%), Gaps = 8/242 (3%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+ +G  P+  T++AL+NG  K+ R  D E LL  M  R + PN V +  L++G CK  R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 250 IDMAGDMKEARKIVDEMCTNG--LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                   EA ++V +M + G    PD +TY+ LL G+CK G +E + ++ KE+I RG+ 
Sbjct: 61  ------WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLR 114

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D + +T +++  C+  ++ EA  +L EM++ G  P   T+  +I   C+  + +    L
Sbjct: 115 PDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSL 174

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L++M + G    V TYN LM+GLCK G+L+ A  LL+ M   G  PD + Y+  + G CK
Sbjct: 175 LQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCK 234

Query: 428 HG 429
            G
Sbjct: 235 SG 236



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 12/224 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKA 177
           ++ D  + P+V  +N ++  LCK GKI  A  + ++     G     V ++T+++G CK 
Sbjct: 247 QMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
               E   +   M  +G RPDV TYS+L+NGLCK  ++++A   + EM   G  PN V +
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-----PDKITYTILLDGFCKEGDLE 292
            +L+ G C  GR+       EA ++V+EM + G       P   TY  L+ G CK G ++
Sbjct: 367 CSLVHGLCSCGRL------AEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRID 420

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            AL   + M  +G + D V+++ ++ G  R G+ ++AE +L E+
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464


>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 194/398 (48%), Gaps = 25/398 (6%)

Query: 43  ASLFASILET-RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           + LF +IL + R       V D+L   Y  +  L +AI  F  ++ + F      C   I
Sbjct: 94  SKLFEAILYSYRICDSSPCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYI 153

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
              +      + L FY E+  Y  SP+VY  N++M   CK GK++ A  VF +    G  
Sbjct: 154 SASISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFS 213

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            T  S+NTLI G+C    L+ G +LK +ME +G+RPD  T++ LING C+  +L +A  +
Sbjct: 214 PTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKI 273

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
             EM    + PN + + TLI+G+ + G  +M G      ++ DEM  NG+  D +TY  L
Sbjct: 274 FSEMKANDVVPNTITYNTLINGYSQVGNSEMGG------RLHDEMLRNGIKADILTYNAL 327

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G C EG  + A  + KE+ +  +  ++  F+ALI+G C       A ++ + M++ G 
Sbjct: 328 ILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGC 387

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P+  T+ M+I  FCKN D      +++EM      P  +T + L  GL   G+      
Sbjct: 388 HPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGK------ 441

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
                       +++   +  E   KH  PE FDK ++
Sbjct: 442 ------------EELALKLCKEMEMKHLMPEGFDKXKT 467



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 23/250 (9%)

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT---N 269
           ++L +A L  + +C+      D +F T                MK+ R  +D  C     
Sbjct: 94  SKLFEAILYSYRICDSSPCVFDSLFKTY-------------AQMKKLRNAIDVFCQMKDY 140

Query: 270 GLNP--DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           G  P  +     I      + GD+  AL   +EM +  I  +      ++  FC+ GK+ 
Sbjct: 141 GFLPRVESCNAYISASISLQRGDI--ALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLE 198

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A  + ++M  +G  P   +Y  +I  +C  G   +G +L   M  +G  P   T+N L+
Sbjct: 199 KAIEVFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLI 258

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
           NG C+ G+L  AN +   M    VVP+ ITYN L+ G+ + GN E   +L  E    G+ 
Sbjct: 259 NGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIK 318

Query: 445 SDYACYTSLV 454
           +D   Y +L+
Sbjct: 319 ADILTYNALI 328


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 182/349 (52%), Gaps = 30/349 (8%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P+ + +NV++  + + G+  DA  VFDE  +R +    +++NT+I+GH K  +L+
Sbjct: 193 DGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLE 252

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
            GFRL+  M   G++P+  TY+ L++GLC+  R+ +   LL EM  + + P+   ++ L 
Sbjct: 253 AGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF 312

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DG  +NG                                  G +  A +++  +   GL 
Sbjct: 313 DGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV 372

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P ++ Y  L++G+C+ G+LE A     +M  R I+ D++ + ALI+G C+  ++  A+ +
Sbjct: 373 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 432

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EM   G+ P   T+  +ID + + G  +  F +L EM+ +G  P V +Y +++N  CK
Sbjct: 433 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 492

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441
           +G++  A  +LD M    V+P+   YN +++ + +HG P D   +  EK
Sbjct: 493 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG-PNDQAFILVEK 540



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 191/375 (50%), Gaps = 34/375 (9%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  +++ +G  P+   +NVL+  LC+ G++ +   + DE   + +     +++ L +
Sbjct: 254 GFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 313

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +  +      L      +G+    YT S L+NGLCK+ ++  AE +L  +   GL P
Sbjct: 314 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 373

Query: 233 NDVIFTTLIDGHCKNGRIDMA----GDMKE-------------------------ARKIV 263
             VI+ TLI+G+C+ G ++ A    G MK                          A+ ++
Sbjct: 374 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 433

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM  NG+NP   T+  L+D + + G LE    +  EM + G++ + V++ ++++ FC+ 
Sbjct: 434 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 493

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           GK+ EA  +L +M    + P+   Y  +ID + ++G     F L+++M+S+G  P++ TY
Sbjct: 494 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 553

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSE 440
           N L+ GLC   Q+  A  +++++ +  ++PD ++YN L+   C  GN +   D  +   +
Sbjct: 554 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 613

Query: 441 KGLVSDYACYTSLVS 455
            G+ S    Y  L+S
Sbjct: 614 YGIKSTVRTYHQLIS 628



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 175/376 (46%), Gaps = 41/376 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + R       L  + + L  G +   Y  ++L++ LCK+GK+  A+ V       G
Sbjct: 311 LFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG 370

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+   L+  F     M+   ++PD  TY+ALINGLCK  R+ +A+
Sbjct: 371 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 430

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM + G+ P    F TLID + + G+++      +   ++ EM  NGL P+ ++Y 
Sbjct: 431 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE------KCFIVLSEMQENGLKPNVVSYG 484

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR----------------------------------- 304
            +++ FCK G +  A+ I  +M  +                                   
Sbjct: 485 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 544

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           GI    V +  LI G C   ++ EAE ++  +    L PD  +Y  +I   C  G+    
Sbjct: 545 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 604

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L + M   G    V TY+ L++GL   G+L     L   M+   VVP +  +NI++E 
Sbjct: 605 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 664

Query: 425 HCKHGNPEDFDKLQSE 440
           + K+GN    + L+ E
Sbjct: 665 YSKYGNEIKAEDLRKE 680



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 181/386 (46%), Gaps = 37/386 (9%)

Query: 106 RTNLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           R  LP   L    ++ D   +P  S+   N+L+  L   G+  D +  F      G    
Sbjct: 104 RLRLPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPD 163

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALINGLCKENRLDDAELLL 222
             ++N  +     A +L E   +   M   G  P + ++Y+ +I G+ +  R  DA  + 
Sbjct: 164 TFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVF 223

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDM-----------------------------A 253
            EM ER + PN + + T+IDGH K G ++                              A
Sbjct: 224 DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRA 283

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G M E   ++DEM +  + PD  TY+IL DG  + GD ++ L +  + +K G+ + +   
Sbjct: 284 GRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTC 343

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           + L++G C+ GKV  AE +L+ ++  GL P    Y  +I+ +C+ G+ +  F    +M+S
Sbjct: 344 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 403

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P   TYNAL+NGLCK  ++ NA  LL  M D GV P   T+N L++ + + G  E 
Sbjct: 404 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 463

Query: 434 ----FDKLQSEKGLVSDYACYTSLVS 455
                 ++Q E GL  +   Y S+V+
Sbjct: 464 CFIVLSEMQ-ENGLKPNVVSYGSIVN 488



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 153/312 (49%), Gaps = 6/312 (1%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++ + L+  Y   G L+ A   F  ++  + +        LI+ + +    T      +E
Sbjct: 376 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 435

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + D G +P+V  FN L+    + G+++   +V  E  + GL    VS+ +++N  CK   
Sbjct: 436 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 495

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M    + P+   Y+A+I+   +    D A +L+ +M   G++P+ V +  
Sbjct: 496 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 555

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C   +I       EA +I++ +  + L PD ++Y  L+   C  G+++ ALD+++
Sbjct: 556 LIKGLCNQSQI------SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 609

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M K GI+     +  LISG    G++ E E + ++M++  + P +A + ++++ + K G
Sbjct: 610 RMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYG 669

Query: 360 DTKTGFRLLKEM 371
           +      L KEM
Sbjct: 670 NEIKAEDLRKEM 681



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 29/234 (12%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   RT           E+ + G  P+V  +  +++  CK GKI +A  + D+   + 
Sbjct: 451 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 510

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +   A  +N +I+ + +    D+ F L   M+ +G+ P + TY+ LI GLC ++++ +AE
Sbjct: 511 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 570

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            +++ +    L P+ V + TLI   C  G ID A                          
Sbjct: 571 EIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 630

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
              G + E   +  +M  N + P    + I+++ + K G+   A D+RKEM+++
Sbjct: 631 GGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 684


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 194/379 (51%), Gaps = 37/379 (9%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  L+++D     G+ P V+ +N++++ LCK G++++A+ + ++   RG      +FNT
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI   C    L+E   L   +   G+ PDVYT++ LIN LCK      A  L  EM   G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEAR 260
            TP++V + TLID  C  G++  A D+                             +EA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++ D+M   G++ + IT+  L+DG CK+  ++ A  +  +MI  G++ +N+ + ++++ +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHY 541

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+ G + +A  +L  M   G + D  TY  +I+  CK G T+   ++L+ MR  G  P  
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP--EDFDKL- 437
           + YN ++  L +   +++A  L   M ++G  PD +TY I+  G C+ G P  E FD + 
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFML 661

Query: 438 -QSEKGLVSDYACYTSLVS 455
              +KG + +++ +  L  
Sbjct: 662 EMVDKGFIPEFSSFRMLAE 680



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 7/302 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY FN+L++ LCK G    A  +F+E    G     V++NTLI+  C    L + 
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME +G      TY+ +I+GLCK+ R+++AE +  +M  +G++ N + F TLIDG
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ +ID      +A  ++++M + GL P+ ITY  +L  +CK+GD++ A DI + M  
Sbjct: 506 LCKDKKID------DAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G E+D V +  LI+G C+ G+   A ++LR M   G++P    Y  V+    +  + + 
Sbjct: 560 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRD 619

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-QLKNANMLLDTMLDLGVVPDDITYNILL 422
              L +EM   G  P   TY  +  GLC+ G  +K A   +  M+D G +P+  ++ +L 
Sbjct: 620 ALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLA 679

Query: 423 EG 424
           EG
Sbjct: 680 EG 681



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 174/342 (50%), Gaps = 11/342 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+   G  P V  FN LM  LC+  +++ A ++ +E   RG+     +F TL+ G  +
Sbjct: 169 YSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVE 228

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +++   R+K+ M   G      T + LING CK  R++DA   + +    G  P+ + 
Sbjct: 229 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQIT 288

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T ++G C+N  +        A K++D M   G +PD  TY I+++  CK G LE A  
Sbjct: 289 YNTFVNGLCQNDHVG------HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I  +M+ RG   D   F  LI+  C G ++ EA  + R++   G+ PD  T+ ++I+  C
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 402

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD     RL +EM++ G  P   TYN L++ LC  G+L  A  LL  M   G     I
Sbjct: 403 KVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTI 462

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           TYN +++G CK    E+    FD++  + G+  +   + +L+
Sbjct: 463 TYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLI 503



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 170/342 (49%), Gaps = 29/342 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G S +    NVL++  CK G+++DA     +    G     +++NT +NG C+  +
Sbjct: 242 MLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDH 301

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +    ++  VM   G  PDV+TY+ ++N LCK  +L++A+ +L++M +RG  P+   F T
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LI   C   R++ A                             GD   A ++ +EM  +G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             PD++TY  L+D  C  G L  ALD+ K+M   G     + +  +I G C+  ++ EAE
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  +M   G+  +  T+  +ID  CK+      F L+ +M S+G  P   TYN+++   
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHY 541

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           CK G +K A  +L+TM   G   D +TY  L+ G CK G  +
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 153/296 (51%), Gaps = 7/296 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +   P + L  + E+ + G +P    +N L+  LC  GK+  A  +  +    G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + +++NT+I+G CK   ++E   +   M+  G+  +  T++ LI+GLCK+ ++DDA 
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 516

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+++M   GL PN++ + +++  +CK       GD+K+A  I++ M  NG   D +TY 
Sbjct: 517 GLINQMISEGLQPNNITYNSILTHYCKQ------GDIKKAADILETMTANGFEVDVVTYG 570

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G CK G  + AL + + M  +G+     A+  ++    R   + +A  + REM +V
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 340 GLKPDDATYTMVIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           G  PD  TY +V    C+  G  K  F  + EM   G +P   ++  L  GL   G
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 174/340 (51%), Gaps = 11/340 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++P   V+  ++ KL   G +   +++  E  + G        ++ ++ +   +  D+  
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 185 RL--KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            L    +    G++ D   Y+ L+N L + +++   E +  EM  RG+ P+ V F TL+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C+      A  ++ A  +++EM + G+ PD+ T+T L+ GF +EG +E+AL ++  M+
Sbjct: 190 ALCR------AHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARML 243

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + G     V    LI+G+C+ G+V +A   +++ +  G +PD  TY   ++  C+N    
Sbjct: 244 EMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVG 303

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +++  M  +GH P V TYN ++N LCK+GQL+ A  +L+ M+D G +PD  T+N L+
Sbjct: 304 HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSK 459
              C     E   D  +  + KG+  D   +  L++   K
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 1/159 (0%)

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           + G     +  ++++  Y   G +  A      +  + F +       LI+ + +     
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V L     +   G  P+   +N ++  L +   I+DA  +F E  + G    A+++  + 
Sbjct: 584 VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVF 643

Query: 172 NGHCKAKN-LDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            G C+    + E F     M   G  P+  ++  L  GL
Sbjct: 644 RGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGL 682


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/428 (29%), Positives = 207/428 (48%), Gaps = 24/428 (5%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           L  YST+++         +A ++L  +V++ G+      + S+++       GL  D   
Sbjct: 77  LVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD-------GLCRD--- 126

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-DYGY 125
                 G +D A +  R ++             LI            L  Y EIL    +
Sbjct: 127 ------GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSW 180

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P V  +  L+   CK G ++ A  +      R      V++++L++G CKA +LD+   
Sbjct: 181 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 240

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   G  P+V TY+ LI+GLC  +++D A LL+ EM      P+ V +  L+DG+C
Sbjct: 241 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYC 300

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM-IKR 304
           + GRI+      EA+++  EM T    PD+ITYT L+ GFC    LE A  + + M    
Sbjct: 301 RLGRIE------EAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           GI+ D V ++ +++G+ R  + VEA   ++EM+   + P+  TY+ +ID  CK G     
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHA 414

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +LK M +    P+V T+N+++  LC+ G +  A  LL  M   G+ P  +TY  LLEG
Sbjct: 415 MEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEG 474

Query: 425 HCKHGNPE 432
             + G  E
Sbjct: 475 FSRTGRME 482



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 177/341 (51%), Gaps = 11/341 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE-FGKRGLHATAVSFNTLINGHCKAKNLDE 182
           G  P  + F+ L+   C   K+ +A  ++ E           V++  LI+G CK+ NL++
Sbjct: 143 GVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEK 202

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             ++  VMEG    P+V TYS+L++GLCK   LD A  L   M  +G  PN V +TTLI 
Sbjct: 203 AMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIH 262

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C   ++D       AR ++DEM      PD ++Y  LLDG+C+ G +E A  + KEM 
Sbjct: 263 GLCAAHKVD------AARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMA 316

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVIDCFCKNGDT 361
            +    D + +T L+ GFC   ++ EA  +L  M    G+ PD  TY++V+  + +    
Sbjct: 317 TKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRF 376

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                 ++EM +    P   TY++L++GLCK G++ +A  +L  M++  V P   T+N +
Sbjct: 377 VEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSV 436

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           +   C+ G+ ++  KL    +  GL      YT+L+   S+
Sbjct: 437 IGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 477



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 187/373 (50%), Gaps = 37/373 (9%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+V  + +++   CK  ++K A   F++  +  +     ++N ++NG CKA+   + + 
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLIDG 243
            LK + +G  + PD+ TYS +ING CK+  +D A  +L EM  R G+ P+ V +T+++DG
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 244 HCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNG-LNP 273
            C++G++D A +M                              EA K+  E+ T+    P
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D +TYT L+DGFCK G+LE A+ +   M  R    + V +++L+ G C+ G + +A  + 
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 242

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R M   G  P+  TYT +I   C          L+ EM +    P   +YNAL++G C+ 
Sbjct: 243 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRL 302

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           G+++ A  L   M     +PD ITY  L+ G C     E+     + +++  G+  D   
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 362

Query: 450 YTSLVSKSSKYRQ 462
           Y+ +V+  S+ ++
Sbjct: 363 YSIVVAGYSRAKR 375



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 49/342 (14%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  +   G  P+V  +  L+H LC   K+  A+++ DE          VS+N L++
Sbjct: 238 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM-CERGLT 231
           G+C+   ++E  +L   M      PD  TY+ L+ G C  +RL++A  LL  M    G+ 
Sbjct: 298 GYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 357

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V ++ ++ G+ +  R        EA + + EM    + P+ +TY+ L+DG CK G +
Sbjct: 358 PDVVTYSIVVAGYSRAKRF------VEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 411

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A+++ K M+ + +E     F ++I   CR G + EA ++L  M   GL+P   TYT +
Sbjct: 412 DHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTL 471

Query: 352 IDCFCKNGDTKTGFRL------------------------------------------LK 369
           ++ F + G  +  + L                                          ++
Sbjct: 472 LEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVE 531

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           E+RS    PA E   A+++GL + G+ + A  L++++  +G+
Sbjct: 532 ELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 190/377 (50%), Gaps = 13/377 (3%)

Query: 93  PARGCRC-LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           P   C C +ID + +  L       +LE+   G SP V  ++ ++H +C  G+ + A+ +
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           F+E    G+H   V+FN LI+  CKA  ++E   L  +M   G  PD +TY+ LI+G C 
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCL 355

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           E R+DDA  L   M  +G+  + V +  LI+G+CK+GR      M EA+K+  EM    +
Sbjct: 356 EGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR------MVEAKKLYREMMCKEI 409

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  ITY  LL G  +EG +  A ++  EM    +  ++  +  L+ G C+   + EA  
Sbjct: 410 MPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAME 469

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +   +     +P    +  +ID  CK    +    L   +  +G  P V TY  +++GLC
Sbjct: 470 LFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLC 529

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYA 448
           K GQL+NA  L   M + G  P+ +T+N L+ G C++   +   +L    +EK    D +
Sbjct: 530 KSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDAS 589

Query: 449 CYT---SLVSKSSKYRQ 462
             +    L+SK  KYR+
Sbjct: 590 TISIVVDLLSKDEKYRE 606



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 186/358 (51%), Gaps = 17/358 (4%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF--GKRGLHATA----VSFN 168
           G   +++  GY P+V  +  L++ LC  G    A  + +E   G  G   T     V + 
Sbjct: 183 GLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYC 242

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           T+I+  CK   +D+G  L   M+G G+ PDV  YS++I+G+C   R + A+ L +EM + 
Sbjct: 243 TIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDE 302

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G+ PN V F  LID  CK      AG M+EA  ++  M   G +PD  TY  L+DGFC E
Sbjct: 303 GVHPNVVTFNVLIDALCK------AGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLE 356

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G ++ A D+   M  +GIE D V++  LI+G+C+ G++VEA+++ REM+   + P   TY
Sbjct: 357 GRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITY 416

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             ++    + G  +  + L  EM+     P   TYN L++GLCK+  L  A  L   + +
Sbjct: 417 NTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLEN 476

Query: 409 LGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
               P    +N L++G CK    E     F++L S +GL  +   YT ++    K  Q
Sbjct: 477 HDFQPSIQIFNCLIDGLCKARKIEIARELFNRL-SHEGLEPNVITYTVMIHGLCKSGQ 533



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 176/345 (51%), Gaps = 15/345 (4%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++D   +P +  FN L+  + K  +  D   ++      GL    ++ N LIN +C    
Sbjct: 83  LIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNK 142

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +D G  +   M   G  P+  T+++L+ GLC  +R+ +A  LL +M   G  PN V + T
Sbjct: 143 VDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGT 202

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCT-NG-----LNPDKITYTILLDGFCKEGDLES 293
           L++G C      M G+   A K+ +EM   NG     + P+ + Y  ++D  CK+G ++ 
Sbjct: 203 LLNGLC------MTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDK 256

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
             ++  EM  RGI  D VA++++I G C  G+   A+ +  EM+  G+ P+  T+ ++ID
Sbjct: 257 GKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLID 316

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G  +    LLK M   G  P   TYN L++G C  G++ +A  L  +M   G+  
Sbjct: 317 ALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIET 376

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           D ++YN+L+ G+CK G   +  KL  E   K ++     Y +L++
Sbjct: 377 DAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLT 421



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 47/346 (13%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P     N+L++  C   K+     V  E  +RG     V+F +L+ G C    + E 
Sbjct: 122 GLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEA 181

Query: 184 FRLKSVMEGSGMRPDVYTYSALING----------------------------------- 208
             L   M   G RP+V TY  L+NG                                   
Sbjct: 182 TGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCY 241

Query: 209 ------LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
                 LCK+  +D  + L  EM  RG++P+ V ++++I G C  GR       + A+ +
Sbjct: 242 CTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGR------WEGAKGL 295

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            +EM   G++P+ +T+ +L+D  CK G +E A  + K MI+RG   D   +  LI GFC 
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCL 355

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            G++ +A  +   M   G++ D  +Y ++I+ +CK+G      +L +EM     +P V T
Sbjct: 356 EGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVIT 415

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           YN L+ GL + G++++A  L   M    + P+  TYNILL+G CK+
Sbjct: 416 YNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKN 461



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 29/286 (10%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G SP  + +N L+   C EG+I DA+ +F     +G+   AVS+N LING+CK+  
Sbjct: 334 MIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR 393

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E  +L   M    + P V TY+ L+ GL +E ++ DA  L  EM    LTP    +  
Sbjct: 394 MVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNI 453

Query: 240 LIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNG 270
           L+DG CKN  +  A ++                             + AR++ + +   G
Sbjct: 454 LLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEG 513

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L P+ ITYT+++ G CK G LE+A D+   M ++G   + V F  L+ GFC+  ++ +  
Sbjct: 514 LEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVV 573

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
            +L+EM +    PD +T ++V+D   K+   +    LL    + G 
Sbjct: 574 ELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQGQ 619



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 146/327 (44%), Gaps = 24/327 (7%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVS------------------KKGMGSSASLFASIL 50
           AYS+++H +        A+ L + +V                   K G    A+    ++
Sbjct: 275 AYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLM 334

Query: 51  ETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
             RG        + L+  +   G +DDA   F  +        A     LI+   ++   
Sbjct: 335 IQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRM 394

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
                 Y E++     P+V  +N L+  L +EGK++DA  +F E     L   + ++N L
Sbjct: 395 VEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNIL 454

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ++G CK  +L E   L   +E    +P +  ++ LI+GLCK  +++ A  L + +   GL
Sbjct: 455 LDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGL 514

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            PN + +T +I G CK+G+++ A D+         M   G  P+ +T+  L+ GFC+  +
Sbjct: 515 EPNVITYTVMIHGLCKSGQLENAKDLFLG------MEEKGCAPNLVTFNTLMRGFCQNDE 568

Query: 291 LESALDIRKEMIKRGIELDNVAFTALI 317
           ++  +++ +EM ++    D    + ++
Sbjct: 569 MQKVVELLQEMAEKDFSPDASTISIVV 595



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 52/304 (17%)

Query: 197 PDVYTYSALINGLCKENRLDDAEL--LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           PD       +   CK   +  +E   + + + +   TP    F TL+    K  R     
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKR----- 107

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +   +   M   GL PD IT  IL++ +C    ++  L +  EM++RG   + V FT
Sbjct: 108 -YFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFT 166

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATY------------TM------------ 350
           +L+ G C G ++ EA  +LR+M+++G +P+  TY            TM            
Sbjct: 167 SLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNG 226

Query: 351 -----------------VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
                            +ID  CK+G    G  L  EM+  G  P V  Y+++++G+C  
Sbjct: 227 NGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHT 286

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD---KLQSEKGLVSDYACY 450
           G+ + A  L + M+D GV P+ +T+N+L++  CK G  E+ +   KL  ++G   D   Y
Sbjct: 287 GRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTY 346

Query: 451 TSLV 454
            +L+
Sbjct: 347 NTLI 350



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L +A++ F  L  H F+   +   CLID + +     +    +  +   G  P+V  + V
Sbjct: 464 LSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTV 523

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++H LCK G++++A+ +F    ++G     V+FNTL+ G C+   + +   L   M    
Sbjct: 524 MIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKD 583

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             PD  T S +++ L K+ +  +   LL     +G T
Sbjct: 584 FSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQGQT 620


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 178/336 (52%), Gaps = 30/336 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ + +NV++  + + G+  DA  VFDE  +R +    +++NT+I+GH K  +L+ GFRL
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M   G++P+  TY+ L++GLC+  R+ +   LL EM  + + P+   ++ L DG  +
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 180

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           NG                                  G +  A +++  +   GL P ++ 
Sbjct: 181 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 240

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++G+C+ G+LE A     +M  R I+ D++ + ALI+G C+  ++  A+ +L EM 
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G+ P   T+  +ID + + G  +  F +L EM+ +G  P V +Y +++N  CK+G++ 
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 360

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            A  +LD M    V+P+   YN +++ + +HG P D
Sbjct: 361 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG-PND 395



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 191/375 (50%), Gaps = 34/375 (9%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  +++ +G  P+   +NVL+  LC+ G++ +   + DE   + +     +++ L +
Sbjct: 117 GFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 176

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +  +      L      +G+    YT S L+NGLCK+ ++  AE +L  +   GL P
Sbjct: 177 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 236

Query: 233 NDVIFTTLIDGHCKNGRIDMA----GDMKE-------------------------ARKIV 263
             VI+ TLI+G+C+ G ++ A    G MK                          A+ ++
Sbjct: 237 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 296

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM  NG+NP   T+  L+D + + G LE    +  EM + G++ + V++ ++++ FC+ 
Sbjct: 297 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 356

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           GK+ EA  +L +M    + P+   Y  +ID + ++G     F L+++M+S+G  P++ TY
Sbjct: 357 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 416

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSE 440
           N L+ GLC   Q+  A  +++++ +  ++PD ++YN L+   C  GN +   D  +   +
Sbjct: 417 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 476

Query: 441 KGLVSDYACYTSLVS 455
            G+ S    Y  L+S
Sbjct: 477 YGIKSTVRTYHQLIS 491



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 175/376 (46%), Gaps = 41/376 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + R       L  + + L  G +   Y  ++L++ LCK+GK+  A+ V       G
Sbjct: 174 LFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG 233

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+   L+  F     M+   ++PD  TY+ALINGLCK  R+ +A+
Sbjct: 234 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 293

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM + G+ P    F TLID + + G+++      +   ++ EM  NGL P+ ++Y 
Sbjct: 294 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE------KCFIVLSEMQENGLKPNVVSYG 347

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR----------------------------------- 304
            +++ FCK G +  A+ I  +M  +                                   
Sbjct: 348 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 407

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           GI    V +  LI G C   ++ EAE ++  +    L PD  +Y  +I   C  G+    
Sbjct: 408 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 467

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L + M   G    V TY+ L++GL   G+L     L   M+   VVP +  +NI++E 
Sbjct: 468 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 527

Query: 425 HCKHGNPEDFDKLQSE 440
           + K+GN    + L+ E
Sbjct: 528 YSKYGNEIKAEDLRKE 543



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 167/337 (49%), Gaps = 12/337 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDE 182
           G  P  + +N  +      G + +A  +    G+ G     A S+N +I G  +A    +
Sbjct: 22  GARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGD 81

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              +   M    + P+  TY+ +I+G  K   L+    L  +M   GL PN + +  L+ 
Sbjct: 82  AVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLS 141

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C+ GR      M E   ++DEM +  + PD  TY+IL DG  + GD ++ L +  + +
Sbjct: 142 GLCRAGR------MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 195

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           K G+ + +   + L++G C+ GKV  AE +L+ ++  GL P    Y  +I+ +C+ G+ +
Sbjct: 196 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 255

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             F    +M+S    P   TYNAL+NGLCK  ++ NA  LL  M D GV P   T+N L+
Sbjct: 256 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 315

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           + + + G  E       ++Q E GL  +   Y S+V+
Sbjct: 316 DAYGRTGQLEKCFIVLSEMQ-ENGLKPNVVSYGSIVN 351



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 144/276 (52%), Gaps = 12/276 (4%)

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP-NDVIFTTLIDG 243
           R   ++  +G RPD + ++  +        L +A  +L  M   G  P N   +  +I G
Sbjct: 13  RAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAG 72

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + GR    GD   A ++ DEM    + P+ ITY  ++DG  K GDLE+   +R +M+ 
Sbjct: 73  MWRAGR---GGD---AVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVC 126

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + + +  L+SG CR G++ E   +L EM    + PD  TY+++ D   +NGD+K 
Sbjct: 127 HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKA 186

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +   +G      T + L+NGLCK G++  A  +L ++++ G+VP  + YN L+ 
Sbjct: 187 MLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 246

Query: 424 GHCKHGNPE----DFDKLQSEKGLVSDYACYTSLVS 455
           G+C+ G  E     F +++S + +  D+  Y +L++
Sbjct: 247 GYCQTGELEGAFSTFGQMKS-RHIKPDHITYNALIN 281



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 153/312 (49%), Gaps = 6/312 (1%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++ + L+  Y   G L+ A   F  ++  + +        LI+ + +    T      +E
Sbjct: 239 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 298

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + D G +P+V  FN L+    + G+++   +V  E  + GL    VS+ +++N  CK   
Sbjct: 299 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 358

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M    + P+   Y+A+I+   +    D A +L+ +M   G++P+ V +  
Sbjct: 359 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 418

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C   +I       EA +I++ +  + L PD ++Y  L+   C  G+++ ALD+++
Sbjct: 419 LIKGLCNQSQI------SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 472

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M K GI+     +  LISG    G++ E E + ++M++  + P +A + ++++ + K G
Sbjct: 473 RMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYG 532

Query: 360 DTKTGFRLLKEM 371
           +      L KEM
Sbjct: 533 NEIKAEDLRKEM 544



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 5/201 (2%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-A 312
           G   + R+    + + G  PD   +   +      GDL  A+ + + M + G    N  +
Sbjct: 6   GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 65

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  +I+G  R G+  +A  +  EM +  + P+  TY  +ID   K GD + GFRL  +M 
Sbjct: 66  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 125

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P   TYN L++GLC+ G++   + LLD M    +VPD  TY+IL +G  ++G+ +
Sbjct: 126 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 185

Query: 433 D----FDKLQSEKGLVSDYAC 449
                F K       + DY C
Sbjct: 186 AMLSLFGKYLKNGVTIGDYTC 206



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VET 382
           G+  +  R    +   G +PD   +   +      GD      +L+ M  DG  P    +
Sbjct: 6   GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 65

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-- 440
           YN ++ G+ + G+  +A  + D M +  V+P+ ITYN +++GH K G+ E   +L+ +  
Sbjct: 66  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 125

Query: 441 -KGLVSDYACYTSLVS 455
             GL  +   Y  L+S
Sbjct: 126 CHGLKPNAITYNVLLS 141


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 185/348 (53%), Gaps = 18/348 (5%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            + +GF+L+ + YG          L++ LCK G+ K A  +      + +    V +NT+
Sbjct: 289 VIAMGFHLDQVSYG---------TLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTI 339

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+G CK K++++ F L S      + PDV+TY+ALI+G C   +L DA  L ++M  + +
Sbjct: 340 IDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNI 399

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+   F+ L+DG CK+G I      KEA+ ++  M    + PD +TY+ L+DG+C   +
Sbjct: 400 IPDVYTFSILVDGFCKDGNI------KEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A  I   M  RG+  +  ++  +I+GFC+   V EA ++ +EM    + PD  TY+ 
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +ID  CK+G       L+ EM   G  P + TYN++++ LCK   +  A  LL  +   G
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           + PD  TY IL++G C+ G  ED  K+  +   KG   D   YT ++ 
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQ 621



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 169/323 (52%), Gaps = 6/323 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID M +          Y E +     P V+ +N L+   C  GK+KDA  +F++   + 
Sbjct: 339 IIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKN 398

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     +F+ L++G CK  N+ E   + ++M    ++PDV TYS+L++G C  N ++ AE
Sbjct: 399 IIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAE 458

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            + + M  RG+T N   +  +I+G CK   +D      EA K+  EM    + PD ITY+
Sbjct: 459 SIFNTMSHRGVTANVQSYNIMINGFCKIKMVD------EAMKLFKEMHHKQIFPDVITYS 512

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG CK G +  AL++  EM  RG + D + + +++   C+   V +A  +L ++   
Sbjct: 513 SLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQ 572

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++PD  TYT+++   C++G  +   ++ +++   G+   V  Y  ++ G C  G    A
Sbjct: 573 GIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEA 632

Query: 400 NMLLDTMLDLGVVPDDITYNILL 422
             LL  M + G +PD  TY I++
Sbjct: 633 LALLSKMEENGCIPDAKTYEIII 655



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 176/332 (53%), Gaps = 9/332 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P V ++N ++  +CK+  + DA  ++ E   + +     ++N LI+G C    L +   
Sbjct: 330 QPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAID 389

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M    + PDVYT+S L++G CK+  + +A+ +L  M ++ + P+ V +++L+DG+C
Sbjct: 390 LFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYC 449

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
                 +  ++ +A  I + M   G+  +  +Y I+++GFCK   ++ A+ + KEM  + 
Sbjct: 450 ------LVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQ 503

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D + +++LI G C+ G++  A  ++ EM   G +PD  TY  ++D  CK        
Sbjct: 504 IFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAI 563

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL +++  G  P + TY  L+ GLC+ G+L++A  + + +L  G   D   Y ++++G 
Sbjct: 564 TLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGF 623

Query: 426 CKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           C  G  ++   L S   E G + D   Y  ++
Sbjct: 624 CDKGLFDEALALLSKMEENGCIPDAKTYEIII 655



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 164/299 (54%), Gaps = 9/299 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P VY F++L+   CK+G IK+A+ V     K+ +    V++++L++G+C    +++   +
Sbjct: 401 PDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESI 460

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G+  +V +Y+ +ING CK   +D+A  L  EM  + + P+ + +++LIDG CK
Sbjct: 461 FNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCK 520

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +GRI  A ++      VDEM   G  PD ITY  +LD  CK+  ++ A+ +  ++  +GI
Sbjct: 521 SGRISYALEL------VDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGI 574

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T L+ G C+ GK+ +A ++  ++L  G   D   YT++I  FC  G       
Sbjct: 575 RPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALA 634

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV---VPDDITYNILL 422
           LL +M  +G +P  +TY  ++  L +  +   A  LL  M+  G+   + DD+  +IL+
Sbjct: 635 LLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALTDDLVASILV 693



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           NG  PD IT T  + GFC +G +  AL    ++I  G  LD V++  LI+G C+ G+   
Sbjct: 257 NGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKA 316

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +LR      ++PD   Y  +ID  CK+      F L  E  S    P V TYNAL++
Sbjct: 317 ALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALIS 376

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVS 445
           G C  G+LK+A  L + M    ++PD  T++IL++G CK GN ++   + +   ++ +  
Sbjct: 377 GFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKP 436

Query: 446 DYACYTSLV 454
           D   Y+SL+
Sbjct: 437 DVVTYSSLM 445



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 121/241 (50%), Gaps = 9/241 (3%)

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           ++ + G  P+ +  TT I G C  G+I       +A    D++   G + D+++Y  L++
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQI------HQALHFHDKVIAMGFHLDQVSYGTLIN 306

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G CK G+ ++AL++ +    + ++ D V +  +I G C+   V +A  +  E +   + P
Sbjct: 307 GLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFP 366

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  TY  +I  FC  G  K    L  +M S   +P V T++ L++G CK G +K A  +L
Sbjct: 367 DVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVL 426

Query: 404 DTMLDLGVVPDDITYNILLEGHC---KHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKY 460
             M+   + PD +TY+ L++G+C   +    E      S +G+ ++   Y  +++   K 
Sbjct: 427 AMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKI 486

Query: 461 R 461
           +
Sbjct: 487 K 487



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  + +L+  LC+ GK++DA+ VF++   +G +    ++  +I G C     DE 
Sbjct: 573 GIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEA 632

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
             L S ME +G  PD  TY  +I  L +++  D AE LL EM  RGL
Sbjct: 633 LALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 176/342 (51%), Gaps = 11/342 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+ + G  P V  FN LM  LC+  +++ A ++ +E    G+     +F TL+ G  +
Sbjct: 173 YSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVE 232

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             ++    R+K+ M   G  P   T + LING CK  R++DA   + +    G  P+ + 
Sbjct: 233 EGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQIT 292

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T ++G C+NG +        A K++D M   G +PD  TY I+++  CK G LE A  
Sbjct: 293 YNTFVNGLCQNGHVG------HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 346

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I  +M++RG   D   F  LI   C G ++ EA  + R++   GL PD  T+ ++I+  C
Sbjct: 347 ILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALC 406

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K GD +   RL +EM+S G  P   TYN L++ LC  G+L  A  LL  M   G     +
Sbjct: 407 KVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTV 466

Query: 417 TYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           TYN +++G CK    E+    FD++  + G+  +   + +L+
Sbjct: 467 TYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLI 507



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 7/302 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY FN+L++ LCK G  + A  +F+E    G     V++NTLI+  C    L + 
Sbjct: 390 GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKA 449

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME +G      TY+ +I+GLCK+ R+++AE +  +M  +G++ N + F TLIDG
Sbjct: 450 LDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 509

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ RID      +A +++ +M + GL P+ ITY  +L  +CK+GD++ A DI + M  
Sbjct: 510 LCKDKRID------DANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTA 563

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G E+D V +  LI+G C+ G+   A ++LR M   G++     Y  VI    +  +T+ 
Sbjct: 564 NGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRD 623

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG-QLKNANMLLDTMLDLGVVPDDITYNILL 422
              L +EM   G  P   TY  +  GLC+ G  ++ A   L  M+D G +P+  ++ +L 
Sbjct: 624 AMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLA 683

Query: 423 EG 424
           EG
Sbjct: 684 EG 685



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 192/377 (50%), Gaps = 37/377 (9%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  L+++D     G+ P V+ +N++++ LCK G++++A+ + ++  +RG      +FNT
Sbjct: 306 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNT 365

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI   C    L+E   L   +   G+ PDVYT++ LIN LCK      A  L  EM   G
Sbjct: 366 LIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG 425

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEAR 260
            TP++V + TLID  C  G++  A D+                             +EA 
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAE 485

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++ D+M   G++ + IT+  L+DG CK+  ++ A  +  +MI  G++ +N+ + ++++ +
Sbjct: 486 EVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHY 545

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+ G + +A  +L+ M   G + D  TY  +I+  CK G T+   +LL+ MR  G     
Sbjct: 546 CKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATP 605

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP--EDFDKL- 437
           + YN ++  L +    ++A  L   M ++G  PD  TY I+  G C+ G    E FD L 
Sbjct: 606 KAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLL 665

Query: 438 -QSEKGLVSDYACYTSL 453
              +KG + +++ +  L
Sbjct: 666 EMVDKGFIPEFSSFRML 682



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 172/342 (50%), Gaps = 29/342 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G SP+    NVL++  CK G+++DA     +    G     +++NT +NG C+  +
Sbjct: 246 MLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGH 305

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +    ++  VM   G  PDV+TY+ ++N LCK  +L++A+ +L++M ERG  P+   F T
Sbjct: 306 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNT 365

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           LI   C   R++ A                             GD + A ++ +EM ++G
Sbjct: 366 LIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG 425

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             PD++TY  L+D  C  G L  ALD+ KEM   G     V +  +I G C+  ++ EAE
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAE 485

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  +M   G+  +  T+  +ID  CK+       +L+ +M S+G  P   TYN+++   
Sbjct: 486 EVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHY 545

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           CK G +K A  +L TM   G   D +TY  L+ G CK G  +
Sbjct: 546 CKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQ 587



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 150/296 (50%), Gaps = 7/296 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +   P + L  + E+   G +P    +N L+  LC  GK+  A  +  E    G
Sbjct: 401 LINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + V++NT+I+G CK   ++E   +   M+  G+  +  T++ LI+GLCK+ R+DDA 
Sbjct: 461 CPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDAN 520

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ +M   GL PN++ + +++  +CK       GD+K+A  I+  M  NG   D +TY 
Sbjct: 521 QLISQMISEGLQPNNITYNSILTHYCKQ------GDIKKAADILQTMTANGFEVDVVTYG 574

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G CK G  + AL + + M  +G+     A+  +I    R     +A  + REM +V
Sbjct: 575 TLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEV 634

Query: 340 GLKPDDATYTMVIDCFCKNGDT-KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           G  PD  TY +V    C+ G + +  F  L EM   G +P   ++  L  GL   G
Sbjct: 635 GEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 150/269 (55%), Gaps = 9/269 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G++ D   Y+ L+N L + +++   E +  EM ERG+ P+ V F TL+   C+      A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCR------A 198

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
             ++ A  +++EM ++G+ PD+ T+T L+ GF +EG +++AL ++  M++ G     V  
Sbjct: 199 HQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTV 258

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI+G+C+ G+V +A   +++ +  G +PD  TY   ++  C+NG      +++  M  
Sbjct: 259 NVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQ 318

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE- 432
           +GH P V TYN ++N LCK+GQL+ A  +L+ M++ G +PD  T+N L+   C     E 
Sbjct: 319 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEE 378

Query: 433 --DFDKLQSEKGLVSDYACYTSLVSKSSK 459
             D  +  + KGL  D   +  L++   K
Sbjct: 379 ALDLARQVTLKGLSPDVYTFNILINALCK 407


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 168/297 (56%), Gaps = 6/297 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   F +L+  LCK+G + +A+ VF+   ++G+     ++N L+NG+C    +++  ++
Sbjct: 189 PNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKV 248

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G  P V++YS LING CK  R+D+A+ LL +M E+ L PN V + TL+ G C 
Sbjct: 249 FEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCH 308

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 A  + EA+++  +MC++G+ P+  TY+ILLDG CK G LE AL +   M +R +
Sbjct: 309 ------ASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKL 362

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E D V +  LI G    GK+  A+ +  ++   G++P   TY ++I    K G +   ++
Sbjct: 363 EPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYK 422

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           L ++M  DG LP   +YN ++ G  ++     A  L+D M+      D  T+ +LL+
Sbjct: 423 LFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 173/341 (50%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + R +     +    ++   G  P    F  L++ LC EG+IK+A  +F+E   R 
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V+F  L++  CK   + E   +   M   G+ P++YTY+AL+NG C    ++DA 
Sbjct: 187 AMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDAS 246

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  P+   ++ LI+G+CK+ RID      EA+ ++ +M    L P+ +TY 
Sbjct: 247 KVFEIMVGKGCAPSVHSYSILINGYCKSRRID------EAKALLTQMSEKELIPNTVTYN 300

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C    L  A ++ K+M   G+  +   ++ L+ G C+ G + EA ++L  M + 
Sbjct: 301 TLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQER 360

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L+PD   Y ++I      G  +    L  ++ ++G  P+V TYN ++ GL K G    A
Sbjct: 361 KLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEA 420

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             L   M D G +PD  +YN++++G  ++ +P    +L  E
Sbjct: 421 YKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDE 461



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 173/335 (51%), Gaps = 9/335 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G + + Y  N+L++ LC+   I  A  V  +  K G+   +V+F TLING C    + E
Sbjct: 115 FGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKE 174

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + M G    P+  T++ L++ LCK+  + +A  +   M E+G+ PN   +  L++
Sbjct: 175 AVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMN 234

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+C      +  +M +A K+ + M   G  P   +Y+IL++G+CK   ++ A  +  +M 
Sbjct: 235 GYC------LRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMS 288

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++ +  + V +  L+ G C    ++EA+ + ++M   G+ P+  TY++++D  CK+G  +
Sbjct: 289 EKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLE 348

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              +LL  M+     P +  YN L+ G+   G+L+ A  L   +   G+ P   TYNI++
Sbjct: 349 EALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMI 408

Query: 423 EGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +G  K G  ++  KL     + G + D   Y  ++
Sbjct: 409 KGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVII 443



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 158/313 (50%), Gaps = 9/313 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           I DA   F          + V     +    K K       L + M+  G+  + YT + 
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN LC+ + +  A  +L +M + G+ P+ V FTTLI+G C  GRI      KEA ++ +
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRI------KEAVELFN 180

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM      P+ +T+TIL+D  CK+G +  A  + + M ++G+E +   + AL++G+C   
Sbjct: 181 EMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRL 240

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++ +A ++   M+  G  P   +Y+++I+ +CK+        LL +M     +P   TYN
Sbjct: 241 EMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYN 300

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEK 441
            LM GLC    L  A  L   M   G++P+  TY+ILL+G CKHG+ E+  KL     E+
Sbjct: 301 TLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQER 360

Query: 442 GLVSDYACYTSLV 454
            L  D   Y  L+
Sbjct: 361 KLEPDIVLYNILI 373



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 141/272 (51%), Gaps = 6/272 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D + +  + +     +  + + G  P++Y +N LM+  C   ++ DA  VF+    +G
Sbjct: 197 LVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKG 256

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              +  S++ LING+CK++ +DE   L + M    + P+  TY+ L+ GLC  + L +A+
Sbjct: 257 CAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQ 316

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +MC  G+ PN   ++ L+DG CK+G ++      EA K++  M    L PD + Y 
Sbjct: 317 ELFKKMCSSGMLPNLRTYSILLDGLCKHGHLE------EALKLLTSMQERKLEPDIVLYN 370

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+ G    G LE A ++  ++   GI      +  +I G  + G   EA ++ R+M   
Sbjct: 371 ILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDD 430

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           G  PD  +Y ++I  F +N D  T  +L+ EM
Sbjct: 431 GFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEM 462



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 155/321 (48%), Gaps = 41/321 (12%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           ++ KKGM S A      +  +G        +ALM  Y     ++DA + F ++       
Sbjct: 200 VLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMV------ 253

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
             +GC                            +PSV+ +++L++  CK  +I +A+ + 
Sbjct: 254 -GKGC----------------------------APSVHSYSILINGYCKSRRIDEAKALL 284

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
            +  ++ L    V++NTL+ G C A +L E   L   M  SGM P++ TYS L++GLCK 
Sbjct: 285 TQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKH 344

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
             L++A  LL  M ER L P+ V++  LI G      + +AG ++ A+++  ++  NG+ 
Sbjct: 345 GHLEEALKLLTSMQERKLEPDIVLYNILIQG------MFIAGKLEVAKELFSKLFANGIR 398

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P   TY I++ G  KEG  + A  + ++M   G   D+ ++  +I GF +      A ++
Sbjct: 399 PSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQL 458

Query: 333 LREMLKVGLKPDDATYTMVID 353
           + EM+      D +T+ M++D
Sbjct: 459 IDEMVGRRFSADSSTFKMLLD 479


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 200/401 (49%), Gaps = 23/401 (5%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGF 116
           + ++ Y   G L  A + F L+       P RGC         L+  +    +    +  
Sbjct: 112 SFVVGYCRAGLLAHACRLFVLM-------PLRGCVRTAFTYTALLHGLCGAGMVREAMSV 164

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +   G +P  +V+  ++H LC  G+ ++A+ +  +    G     V +N LI+G+C 
Sbjct: 165 FAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCN 224

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +L+    +   M+ +G  P+V TY+ LI+G CK  +LD A +L   M + GL PN V 
Sbjct: 225 VGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVT 284

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T LI G C +G++D A       +++  M  +GL P++ T ++L+D  CK   +  A  
Sbjct: 285 YTALIQGQCSDGQLDCA------YRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQL 338

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +   +I++GI+++ + +T+LI G C+ G+   A+R+++ ++  G  PD  TY+ +ID  C
Sbjct: 339 LLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLC 398

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +  +      +L +M   G  P+  TY  +++ L +      +  +LD M+  G+ PD  
Sbjct: 399 RQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVF 458

Query: 417 TYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           TY I +  +C  G  ED + +     + G+  +   Y +L+
Sbjct: 459 TYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALI 499



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 166/306 (54%), Gaps = 6/306 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P+V V+N L+   C  G ++ A  VF+     G      ++  LI+G CK++ LD  
Sbjct: 207 GFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRA 266

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S M  +G+ P+V TY+ALI G C + +LD A  LL  M   GL PN+   + LID 
Sbjct: 267 MMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDA 326

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ R+       EA+ ++  +   G+  ++I YT L+DG CK G   +A  + + ++ 
Sbjct: 327 LCKHERVG------EAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS 380

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   D   +++LI G CR  ++ EA  +L +M++ G++P   TYT++ID   +      
Sbjct: 381 QGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADG 440

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L +M + G  P V TY   +   C  G++++A  ++  M+D GV P+ +TYN L+ 
Sbjct: 441 SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALIC 500

Query: 424 GHCKHG 429
           G+   G
Sbjct: 501 GYANLG 506



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 160/299 (53%), Gaps = 6/299 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP+V  +  L+   CK  K+  A M+F      GL    V++  LI G C    LD  
Sbjct: 242 GCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCA 301

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           +RL   ME SG+ P+ +T S LI+ LCK  R+ +A+LLL  + ++G+  N++++T+LIDG
Sbjct: 302 YRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDG 361

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR         A +++  + + G  PD  TY+ L+DG C++ +L  A+ +  +M++
Sbjct: 362 LCKAGRF------AAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMME 415

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++   V +T +I    R      ++++L +M+  G+KPD  TYT+ +  +C  G  + 
Sbjct: 416 KGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMED 475

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              ++  M   G  P + TYNAL+ G    G    A      M+  G  P++ +Y +LL
Sbjct: 476 AEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLL 534



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 46/374 (12%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G++P  + +   +   C+ G +  A  +F     RG   TA ++  L++G C A  
Sbjct: 98  LLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGM 157

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   + + M+  G  PD + Y+ +++GLC   R  +AE LL +    G  PN V++  
Sbjct: 158 VREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNA 217

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LIDG+C  G +++A D      + + M  NG +P+  TYT L+ GFCK   L+ A+ +  
Sbjct: 218 LIDGYCNVGDLELAVD------VFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFS 271

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT------------ 347
            M+  G+  + V +TALI G C  G++  A R+L+ M   GL P++ T            
Sbjct: 272 RMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHE 331

Query: 348 -----------------------YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
                                  YT +ID  CK G      RL++ + S G +P   TY+
Sbjct: 332 RVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYS 391

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH----GNPEDFDKLQSE 440
           +L++GLC+  +L  A ++LD M++ GV P  +TY I+++   +     G+ +  DK+ + 
Sbjct: 392 SLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIA- 450

Query: 441 KGLVSDYACYTSLV 454
            G+  D   YT  V
Sbjct: 451 AGIKPDVFTYTIFV 464



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 164/326 (50%), Gaps = 9/326 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L++  C  G +  ++       + G    + ++ + + G+C+A  L    RL  +M 
Sbjct: 75  YTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMP 134

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G     +TY+AL++GLC    + +A  +   M   G  P+  ++ T++ G C  GR  
Sbjct: 135 LRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT- 193

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                +EA  ++ +    G  P+ + Y  L+DG+C  GDLE A+D+ + M   G   +  
Sbjct: 194 -----REAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVR 248

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LISGFC+  K+  A  +   M+  GL P+  TYT +I   C +G     +RLL+ M
Sbjct: 249 TYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSM 308

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            + G +P   T + L++ LCKH ++  A +LL +++  G+  ++I Y  L++G CK G  
Sbjct: 309 ENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRF 368

Query: 432 EDFDKLQS---EKGLVSDYACYTSLV 454
              D+L      +G V D   Y+SL+
Sbjct: 369 AAADRLMQTLVSQGFVPDAHTYSSLI 394



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 172/374 (45%), Gaps = 37/374 (9%)

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           DR+M+T            ++  G+ P  + ++ L+  LC++ ++ +A +V D+  ++G+ 
Sbjct: 372 DRLMQT------------LVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQ 419

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            + V++  +I+   +    D   ++   M  +G++PDV+TY+  +   C E R++DAE +
Sbjct: 420 PSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHM 479

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           +  M + G+ PN V +  LI G+   G         +A      M  NG  P++ +YT+L
Sbjct: 480 MLHMVDHGVCPNLVTYNALICGYANLGLT------SQAFSTFKHMVANGCKPNEESYTVL 533

Query: 282 LD----------------GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           L                    K  +++    + +EM+K  +  +   +   ++  CR  +
Sbjct: 534 LRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDR 593

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + EA+ +L EM    L P +  YT +I C C+          +  M   G++P +E+Y  
Sbjct: 594 LDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRH 653

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKG 442
           +++ LC+ G ++ A  +   ML      ++I + IL++G  + G   +   L S   EK 
Sbjct: 654 IISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKN 713

Query: 443 LVSDYACYTSLVSK 456
                A Y  L  K
Sbjct: 714 YRPSDALYARLTGK 727



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 3/189 (1%)

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L++ +C  GDL ++      +++ G   D+ A+T+ + G+CR G +  A R+   M
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G      TYT ++   C  G  +    +   M++DG  P    Y  +++GLC  G+ 
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT 193

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSL 453
           + A  LL   +  G  P+ + YN L++G+C  G+ E   D  +     G   +   YT L
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTEL 253

Query: 454 VSKSSKYRQ 462
           +S   K R+
Sbjct: 254 ISGFCKSRK 262



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R  + T  L F   ++  GY P +  +  ++  LC+EG I+ A+ VF +   +  +   +
Sbjct: 625 RLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEI 684

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           ++  LI+G  +   + E   L SVME    RP    Y+ L   +   N + +
Sbjct: 685 AWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLTGKITDANDIQE 736


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 213/462 (46%), Gaps = 60/462 (12%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+  +  Y+ +++ LVA K +SQ    +H  + K G+  +   F                
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCY-AIHEEMLKAGIAPNTFSF---------------- 157

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + L+  +      DDA+ CF ++++   +        L+D + +  +       + E++ 
Sbjct: 158 NILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMA 217

Query: 123 YGYSPSVYVFNVLMHK-LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            G+ P     +  M + L K  ++K+A+ VF +  K G    A+++NT+I+G  KA +  
Sbjct: 218 MGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQ 277

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E  ++   M      P   TY  L+N LCK   L+ AE L   M   G  PN VI+T+LI
Sbjct: 278 EALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G  K+GR      MKEA  + DEM   G  PD IT+T+++DG CK G+ E A    +EM
Sbjct: 338 HGFAKSGR------MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEM 391

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G + + V +T +I G  + G+V  A R+++ M+  G  PD  TY  ++D FCK G  
Sbjct: 392 MRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMN--------------------------------- 388
               +LL E+      P ++ Y++L+                                  
Sbjct: 452 DEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCS 511

Query: 389 ---GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              GLCK G+L  A  +   M+  G  PD  TYNIL+ G C+
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCR 553



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 188/360 (52%), Gaps = 10/360 (2%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CL++ ++     +     + E+L  G +P+ + FN+L+    +  +  DA   F+   ++
Sbjct: 124 CLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRK 183

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDD 217
                  +F  L++  CKA   ++ F +   M   G + PD   ++A++  L K  R+ +
Sbjct: 184 RCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKE 243

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +  +M + G  P+ + + T+IDG  K      AG  +EA K++D M      P ++T
Sbjct: 244 AREVFGQMEKCGFPPDAIAYNTMIDGLAK------AGHAQEALKVLDNMLAKACVPTEVT 297

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y IL++  CK G LE A ++ + M   G   ++V +T+LI GF + G++ EA  +  EM+
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV 357

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G +PD  T+T++ID  CK+G+ +   +  +EM   G  P V TY  ++ GL K G++ 
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVS---DYACYTSLV 454
           NA  ++  M+  G  PD +TY  LL+G CK G  ++  +L  E    S   +   Y+SLV
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 182/387 (47%), Gaps = 12/387 (3%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           + +A + F  + K  F   A     +ID + +       L     +L     P+   + +
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++ LCK G ++ A+ +F      G    +V + +LI+G  K+  + E   L   M  +G
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            RPDV T++ +I+GLCK    + A     EM   G  PN V +TT+I G  K GR+    
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV---- 416

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
               A +I+  M  +G  PD +TY  LLDGFCK G L+ A  +  E+ K     +   ++
Sbjct: 417 --ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYS 474

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           +L+ G C GG V      L E  K   +  D      +I   CK G      R+ + M S
Sbjct: 475 SLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVS 534

Query: 374 DGHLPAVETYNALMNGLC--KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           +G  P   TYN L+NGLC  +  +++ A  LL  +  +G +PD +TY  L  G CK G  
Sbjct: 535 EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEV 594

Query: 432 EDFDKL---QSEKGLVSDYACYTSLVS 455
           +   K+    S +G  +D   YT+L +
Sbjct: 595 DRAVKMLEEASSRGWNADVVAYTALCT 621



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 208/482 (43%), Gaps = 53/482 (10%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           AY+TM+  L       +A  +L  +++K           + + T  T+  G+++++L   
Sbjct: 262 AYNTMIDGLAKAGHAQEALKVLDNMLAK-----------ACVPTEVTY--GILVNSL--- 305

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G L+ A + FR++    FR  +     LI    ++         + E+++ GY P 
Sbjct: 306 -CKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPD 364

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V    V++  LCK G  + A   F+E  + G     V++ T+I G  K   +   FR+  
Sbjct: 365 VITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK 424

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G  PD  TY  L++G CK  RLD+A  LL E+ +   +PN  ++++L+ G C  G
Sbjct: 425 GMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGG 484

Query: 249 RID------------------------------MAGDMKEARKIVDEMCTNGLNPDKITY 278
            ++                                G + EA +I   M + G  PD  TY
Sbjct: 485 SVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTY 544

Query: 279 TILLDGFC--KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            IL++G C  +E  +E A  +  ++   G   D V +T L  G C+ G+V  A +ML E 
Sbjct: 545 NILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEA 604

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G   D   YT +    C  G       L +EM   G  P    Y  ++NGL K  +L
Sbjct: 605 SSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKL 664

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTS 452
           ++A    D M+  G  P   TY  L++  C  GN ++    F+ + +   LV     Y +
Sbjct: 665 EDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDA 724

Query: 453 LV 454
           L+
Sbjct: 725 LI 726



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 164/342 (47%), Gaps = 53/342 (15%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN-----TLINGHCKAKNL 180
           SP++ +++ L+  LC  G +++     D+  ++   A A + +     ++I G CK   L
Sbjct: 467 SPNLQLYSSLVKGLCDGGSVEN---TLDDLFEQS-KAAAENLDPGLCCSIIVGLCKTGRL 522

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCK--ENRLDDAELLLHEMCERGLTPNDVIFT 238
           DE  R+   M   G +PD  TY+ LINGLC+  ENR++ A  LLH++   G  P+ V +T
Sbjct: 523 DEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYT 582

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L  G CK G +D       A K+++E  + G N D + YT L  G C +G ++ A+ + 
Sbjct: 583 PLCIGLCKIGEVD------RAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLF 636

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID----- 353
           +EM+++G   D  A+  +I+G  +G K+ +A +   EM+  G KP  ATYT ++      
Sbjct: 637 QEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHA 696

Query: 354 -------------------------------CFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
                                           FCK        +L ++M S G++P   T
Sbjct: 697 GNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVT 756

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +L +GL + G+ + A  LL  M   G  P   T+  +L+G
Sbjct: 757 SASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDG 798



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 38/306 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E LD G   S+ V       LCK G++ +A  +F      G    A ++N LING C+++
Sbjct: 502 ENLDPGLCCSIIV------GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSR 555

Query: 179 N--LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              ++  F L   +E  G  PD  TY+ L  GLCK   +D A  +L E   RG   + V 
Sbjct: 556 ENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVA 615

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           +T L  G C  G++D A                               +++A K  DEM 
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI 675

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGKV 326
             G  P   TYT L+   C  G+++ A    + M+ RG  + +V  + ALI GFC+  KV
Sbjct: 676 GKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKV 735

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A ++  +M+  G  P   T   + D   ++G T+    LL+EM + G  P   T+ A+
Sbjct: 736 DAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAI 795

Query: 387 MNGLCK 392
           ++GL K
Sbjct: 796 LDGLRK 801



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 10/316 (3%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           PGL   ++++     G LD+A + F+ +     +  A     LI+ + R+    V   F 
Sbjct: 506 PGLCC-SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFA 564

Query: 118 L--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           L  ++   GY P    +  L   LCK G++  A  + +E   RG +A  V++  L  G C
Sbjct: 565 LLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLC 624

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +D    L   M   G  PD   Y  +INGL K  +L+DA     EM  +G  P   
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVA 684

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESA 294
            +T L+   C  G +D      EA    + M   G L    + Y  L+ GFCK   +++A
Sbjct: 685 TYTALVQALCHAGNVD------EAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAA 738

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L + ++MI RG     V   +L  G  R GK  +A+ +L+EM   G  P  AT+T ++D 
Sbjct: 739 LKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDG 798

Query: 355 FCKNGDTKTGFRLLKE 370
             K+ ++    +L++E
Sbjct: 799 LRKSDESGKLLKLVQE 814



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 135/302 (44%), Gaps = 33/302 (10%)

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E +G + DV+TY+ L+N L  E        +  EM + G+ PN   F  LI    +  R 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 251 DMAGDMKEARK-------------IVDEMCTNGLN-----------------PDKITYTI 280
           D A    E  K             +VD +C  G++                 PD+  +T 
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++    K   ++ A ++  +M K G   D +A+  +I G  + G   EA ++L  ML   
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA 290

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
             P + TY ++++  CK G  +    L + M + G  P    Y +L++G  K G++K A 
Sbjct: 291 CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEAC 350

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKS 457
            L D M++ G  PD IT+ ++++G CK GN E   K   E    G   +   YT+++   
Sbjct: 351 SLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410

Query: 458 SK 459
           SK
Sbjct: 411 SK 412


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 192/407 (47%), Gaps = 33/407 (8%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           G H+P      L++V        DA++ F  +R       A  C  L+  + R  +    
Sbjct: 107 GPHVPSW----LVLVLAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATA 162

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
              + E+   G + + +V+N ++H   K G    A+ +       G+     S+NT+I  
Sbjct: 163 RRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIAL 222

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +C+     E    +  M+  G+RPD  T+++ I+GLCKE R+ +A  L  EM     TP+
Sbjct: 223 YCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPD 282

Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
           +V +TTLIDG+C+ G ++ A                             G+MKE  +++ 
Sbjct: 283 NVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLH 342

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM    +  D +T   L++ +CK GD+ SA  ++K+M++ G++L++  + ALI GFC+  
Sbjct: 343 EMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKAR 402

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++  A+    +M+  G  P+ + ++ ++D FCK  +      +  E+   G  P    Y 
Sbjct: 403 ELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYR 462

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           +L+  LC+ G +  A  + D M   G+V D + Y  L   +   GNP
Sbjct: 463 SLIRRLCRKGLVDQAQRVFDQMQSKGLVGDSLVYATLAYTYLTKGNP 509



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 166/336 (49%), Gaps = 9/336 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P  +    L+  L +      A+ VFDE  + GL AT   +N +++   KA +  + 
Sbjct: 138 GLAPDAHACTALLTALARARMTATARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQA 197

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M+ +G+  D ++Y+ +I   C++    +A      M + G+ P+ V + + I G
Sbjct: 198 EAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHG 257

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR+      KEA ++  EM      PD +TYT L+DG+C+ G++E A+ +R  M  
Sbjct: 258 LCKEGRV------KEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEA 311

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+      + A++   C  G + E  R+L EM    ++ D  T   +I+ +CK GD  +
Sbjct: 312 AGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTS 371

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ K+M   G      TY AL++G CK  +L  A      M+D G  P+   ++ L++
Sbjct: 372 ACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDAGFSPNYSVFSWLVD 431

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
           G CK  N +    +  E   +GL  D A Y SL+ +
Sbjct: 432 GFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRR 467



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 155/330 (46%), Gaps = 32/330 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P    +N  +H LCKEG++K+A  +F E          V++ TLI+G+C+A N++E 
Sbjct: 243 GIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEA 302

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L+  ME +GM P V TY+A++  LC++  + +   LLHEM  R +  + V   TLI+ 
Sbjct: 303 VKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINA 362

Query: 244 HCKNGRIDMAGDMKE-----------------------------ARKIVDEMCTNGLNPD 274
           +CK G +  A  +K+                             A++   +M   G +P+
Sbjct: 363 YCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDAGFSPN 422

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
              ++ L+DGFCK+ + ++ L I  E++KRG+  D   + +LI   CR G V +A+R+  
Sbjct: 423 YSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQRVFD 482

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M   GL  D   Y  +   +   G+       L  M  +      + YN L        
Sbjct: 483 QMQSKGLVGDSLVYATLAYTYLTKGNPTAALNTLDGMTKNQLYITPQIYNCLCTSYADEK 542

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +    NML    ++ G++   + Y ++ E 
Sbjct: 543 E--TLNMLWVRAIERGLIKKSV-YKLMHEA 569



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  R+   M   G+ PD +  +AL+  L +      A  +  EM   GL     ++  ++
Sbjct: 126 DAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAATTHVYNAML 185

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
               K      AGD  +A  IV  M   G+  D+ +Y  ++  +C++G    A+  R  M
Sbjct: 186 HVCLK------AGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARDRM 239

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            K GI  D V + + I G C+ G+V EA ++  EM+     PD+ TYT +ID +C+ G+ 
Sbjct: 240 DKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNV 299

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   +L   M + G LP V TYNA++  LC+ G +K  + LL  M    V  D +T N L
Sbjct: 300 EEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTL 359

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYRQ 462
           +  +CK G+     K++    E GL  ++  Y +L+    K R+
Sbjct: 360 INAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARE 403


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/412 (30%), Positives = 216/412 (52%), Gaps = 20/412 (4%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI--DRMMRTNLPTVTLGFYLEI 120
           +A+M + V+ G+ + A + +  LR  +  I    C   I      RT  P   L     +
Sbjct: 115 NAIMNILVEYGYFNQAHKVY--LRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNM 172

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
              G   +  V+  ++    +E    +A  +F++  + G+     +FN L++  CK  +L
Sbjct: 173 PSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHL 232

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD-------DAELLLHEMCERGLTPN 233
            EG +L + +  +G+ P+++T++  I GLC++  L+       +AE  LH+M  +GL P+
Sbjct: 233 QEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPD 292

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           D  + T+I G+ K G+I      ++A +I+ +    G  PD+ TY  L+ G C++GD++ 
Sbjct: 293 DFTYNTIIYGYSKVGKI------QDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDH 346

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL + +E + +G++   V +  LI G  + G V++A +++ +M K G+ PD  TY +VI+
Sbjct: 347 ALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVIN 406

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G       LL    + G+LP + T+N L++G CK  ++ NA  +LD+M   GV P
Sbjct: 407 GLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTP 466

Query: 414 DDITYNILLEGHCKHGNPEDF---DKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           D ITYN +L G CK   PED     K+  EKG + +   Y  L+    K R+
Sbjct: 467 DVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARK 518



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 174/336 (51%), Gaps = 10/336 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + +  L+  +C++G I  A  +F+E   +GL  + V +NTLI G  +   + + 
Sbjct: 323 GFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKA 382

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L + M   GM PD++TY+ +INGLCK   + DA  LL+    +G  P+   F TLIDG
Sbjct: 383 LQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDG 442

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D       A  I+D M ++G+ PD ITY  +L+G CK    E  ++  K +++
Sbjct: 443 YCKRLKMD------NAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIME 496

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  LI   C+  KV EA  +L E+   GL PD  ++  VI  FC NGD   
Sbjct: 497 KGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDE 556

Query: 364 GFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            ++L + M     +   V TYN ++N   +   +  A  L   M D G  PD  TY +++
Sbjct: 557 AYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMI 616

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           +G CK GN     DF   + E G V     +  +++
Sbjct: 617 DGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVIN 652



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 182/352 (51%), Gaps = 17/352 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEG-------KIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           ++L  G  P+++ FN+ +  LC++G       K+ +A+    +   +GL     ++NT+I
Sbjct: 241 KVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTII 300

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            G+ K   + +  R+    +  G  PD +TY +LI G+C++  +D A  L  E   +GL 
Sbjct: 301 YGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLK 360

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V++ TLI G  + G +       +A +++++M   G++PD  TY ++++G CK G +
Sbjct: 361 PSIVLYNTLIKGLSQQGLV------LKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCV 414

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A ++    I +G   D   F  LI G+C+  K+  A  +L  M   G+ PD  TY  +
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSI 474

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  CK    +      K +   G LP + TYN L+  LCK  ++  A  LL+ + + G+
Sbjct: 475 LNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL 534

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           +PD +++  ++ G C +G+ ++    F +++ +  +    A Y  +++  S+
Sbjct: 535 IPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSE 586



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 7/295 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP ++ +N++++ LCK G + DA  + +    +G      +FNTLI+G+CK   +D  
Sbjct: 393 GMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNA 452

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G+ PDV TY++++NGLCK  + +D       + E+G  PN + +  LI+ 
Sbjct: 453 IGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIES 512

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      A  + EA  +++E+   GL PD +++  ++ GFC  GDL+ A  + + M +
Sbjct: 513 LCK------ARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQ 566

Query: 304 RGIELDNVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +      VA +  +I+ F     +  A+++  EM   G  PD  TY ++ID FCK G+  
Sbjct: 567 QYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVN 626

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           +G+  L +    G +P++ T+  ++N LC   ++  A  ++  M+  GVVP+ + 
Sbjct: 627 SGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV 681



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 174/363 (47%), Gaps = 39/363 (10%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V+   M    ++GK+++A  VF+         +  S+N ++N   +    ++  ++   M
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG-HCKNGR 249
           +  G+ PDV T++  I   C+  R   A  LL+ M  +G   N V++ T+I G + +N +
Sbjct: 138 KHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQ 197

Query: 250 IDM----------------------------AGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           ++                              G ++E  K+++++  NG+ P+  T+ I 
Sbjct: 198 VEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257

Query: 282 LDGFCKEGDLE-------SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           + G C++G LE        A +   +M+ +G+E D+  +  +I G+ + GK+ +A R+L+
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILK 317

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +    G  PD+ TY  +I   C++GD      L +E    G  P++  YN L+ GL + G
Sbjct: 318 DAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQG 377

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYT 451
            +  A  L++ M   G+ PD  TYN+++ G CK G   D + L +    KG + D   + 
Sbjct: 378 LVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFN 437

Query: 452 SLV 454
           +L+
Sbjct: 438 TLI 440



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 117/284 (41%), Gaps = 15/284 (5%)

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
             SV +  G +    TY  +I  L      D  E +L EM  R    N ++    +    
Sbjct: 27  FNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEM--RLNVDNSLLEGVYVSAMR 84

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             GR    G ++EA  + + M      P   +Y  +++   + G    A  +   M   G
Sbjct: 85  NYGR---KGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEG 141

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D   FT  I  FCR  + + A R+L  M   G + +   Y  VI  F +       +
Sbjct: 142 IAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAY 201

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L  +M   G  P + T+N LM+ LCK G L+    LL+ +L  GV P+  T+NI ++G 
Sbjct: 202 ELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGL 261

Query: 426 CKHG----------NPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           C+ G            E++      KGL  D   Y +++   SK
Sbjct: 262 CRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSK 305



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 6/118 (5%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG--FR 185
           +V  +N++++   ++  +  AQ +F E G +G    + ++  +I+G CK  N++ G  F 
Sbjct: 573 TVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFL 632

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           LK +    G  P + T+  +IN LC ++R+ +A  ++H M   G+ P  V+  T+ D 
Sbjct: 633 LKEI--EIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV--TIFDA 686


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 228/493 (46%), Gaps = 51/493 (10%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--L 60
           F+ +  +YS ++  L  + +   A  ++  +VS K       + +S        +P   L
Sbjct: 77  FKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSS----SEVSMPSVKL 132

Query: 61  VLDALMIVYV----------------DLGFLDDAIQCFRLLR------------KHYFRI 92
           +LD L+ +YV                  G L D   C R+LR            +  + +
Sbjct: 133 ILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNV 192

Query: 93  PARGCRC--------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
                 C        ++D   +  +    L    ++   G SP+   +NVL++ L   G+
Sbjct: 193 MVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGE 252

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           ++ A+ +  +  + GL  +  +++ LI G+C+   ++E  RL   M   G  P V TY+ 
Sbjct: 253 MEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNT 312

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           ++ GLCK  R+ DA  LL  M  + L P+ V + TLI G+ +       G++ EA  +  
Sbjct: 313 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTR------LGNIGEAFLLFA 366

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           E+    L P  +TY  L+DG C+ GDL+ A+ ++ EMIK G + D   FT  + GFC+ G
Sbjct: 367 ELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMG 426

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            +  A+ +  EML  GL+PD   Y   I    K GD    F + +EM + G  P + TYN
Sbjct: 427 NLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYN 486

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
             ++GL K G LK A+ L+  ML  G+VPD +TY  ++  H   G+      L  E   K
Sbjct: 487 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSK 546

Query: 442 GLVSDYACYTSLV 454
           G+      YT L+
Sbjct: 547 GIFPSVVTYTVLI 559



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 173/348 (49%), Gaps = 29/348 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P+V  +N +M+ LCK G++ DA+ + D    + L    VS+NTLI G+ +  
Sbjct: 297 EMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLG 356

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E F L + +    + P V TY+ LI+GLC+   LD A  L  EM + G  P+   FT
Sbjct: 357 NIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFT 416

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           T + G CK G + MA                             GD  +A  + +EM   
Sbjct: 417 TFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLAR 476

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD ITY + +DG  K G+L+ A ++ K+M+  G+  D+V +T++I      G + +A
Sbjct: 477 GFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKA 536

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  EML  G+ P   TYT++I  +   G  K       EM   G  P V TYNAL+NG
Sbjct: 537 RALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 596

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           LCK  ++  A      M   G+ P+  TY IL+  +C  G+ ++  +L
Sbjct: 597 LCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRL 644



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 186/392 (47%), Gaps = 25/392 (6%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDA 64
           T+  Y+T+++ L      S AR LL ++V+K  M                  P LV  + 
Sbjct: 306 TVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLM------------------PDLVSYNT 347

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y  LG + +A   F  LR             LID + R     V +    E++ +G
Sbjct: 348 LIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHG 407

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P V+ F   +   CK G +  A+ +FDE   RGL     ++ T I G  K  +  + F
Sbjct: 408 PDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAF 467

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            ++  M   G  PD+ TY+  I+GL K   L +A  L+ +M   GL P+ V +T++I  H
Sbjct: 468 GMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAH 527

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                  MAG +++AR +  EM + G+ P  +TYT+L+  +   G L+ A+    EM ++
Sbjct: 528 L------MAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEK 581

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  + + + ALI+G C+  K+ +A     EM   G+ P+  TYT++I+  C  G  +  
Sbjct: 582 GVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEA 641

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            RL K+M      P   T+ +L+  L K  +L
Sbjct: 642 LRLYKDMLDREIQPDSCTHRSLLKHLNKDYKL 673



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 54/245 (22%)

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE---LDNVAFTA----------- 315
           G    +I+Y+++LD   + G + SA  + ++++   +E   +D V+ +            
Sbjct: 76  GFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILD 135

Query: 316 -LISGFCRGGKVVEAERMLREMLKVGLKPD------------------------------ 344
            L+  + +   + +   +  +M+  GL PD                              
Sbjct: 136 LLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVE 195

Query: 345 ------DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
                   TY  ++D FCK G  +   +LL +M++ G  P   TYN L+NGL   G+++ 
Sbjct: 196 CGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQ 255

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           A  L+  ML LG+     TY+ L+ G+C+ G  E+  +L  E   +G V     Y +++ 
Sbjct: 256 AKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMY 315

Query: 456 KSSKY 460
              K+
Sbjct: 316 GLCKW 320


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 192/396 (48%), Gaps = 46/396 (11%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
           +DAL+ V    GF  D   C  ++R    +   R    L  RM                L
Sbjct: 204 VDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRM----------------L 247

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P+V  +   +  LCK   +K A  V +E   +GL     +  +LING CK    +
Sbjct: 248 EMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTE 307

Query: 182 EGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
             FRL   +++ S  +P+V+TY+ +I G CKE +L  AE+LL  M E+GL PN   +TTL
Sbjct: 308 RAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTL 367

Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
           I GHCK G  + A                             G ++EA K++      GL
Sbjct: 368 ISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGL 427

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             DK+TYT+++   CK+G +  ALD+   M + G   D   +T LI+ +C+  ++ E+++
Sbjct: 428 QLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQK 487

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  + L + L P   TYT +I  +CK G + +  R+ + M  +G      TY AL++GLC
Sbjct: 488 LFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLC 547

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           K  +L+ A  L + MLD  +VP ++T   L   +C+
Sbjct: 548 KESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCR 583



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 169/340 (49%), Gaps = 15/340 (4%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            V++   C++G+ +D   +F    + G     V++   I+G CK   + + F +   M  
Sbjct: 224 TVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVA 283

Query: 193 SGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            G++P+VYT+++LINGLCK    + A  L L  +      PN   +T +I G+CK G+  
Sbjct: 284 KGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGK-- 341

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
               +  A  ++  M   GL P+  TYT L+ G CKEG    A ++  +M + G + +  
Sbjct: 342 ----LARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIY 397

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            + ALI G C+ GK+ EA ++LR     GL+ D  TYT++I   CK G       L   M
Sbjct: 398 TYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRM 457

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
             +G  P + TY  L+   C+  Q++ +  L D  L + +VP   TY  ++ G+CK G  
Sbjct: 458 AENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKS 517

Query: 432 ED----FDKLQSEKGLVSDYACYTSLVS---KSSKYRQKR 464
                 F+++  + G  +D   Y +L+S   K S+  + R
Sbjct: 518 TSALRVFERM-VQNGCQADSITYGALISGLCKESRLEEAR 556



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 11/256 (4%)

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           ++    +  RL +A  ++ EM   GL      F            +D  G    ARK+ D
Sbjct: 120 MVAAFAEAGRLPEAADMVFEMRSHGLP-----FCVETANWVLRAGLD-TGSFAYARKVFD 173

Query: 265 EMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            M T G L PD  ++  L+ G C++G +E    +   M  +G  LDN   T ++  FC+ 
Sbjct: 174 GMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQK 233

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +   + R ML++G  P+   YT  ID  CK    K  F +L+EM + G  P V T+
Sbjct: 234 GRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTH 293

Query: 384 NALMNGLCKHGQLKNA-NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QS 439
            +L+NGLCK G  + A  + L  +      P+  TY +++ G+CK G     + L     
Sbjct: 294 TSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV 353

Query: 440 EKGLVSDYACYTSLVS 455
           E+GL  +   YT+L+S
Sbjct: 354 EQGLAPNTNTYTTLIS 369



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 10/239 (4%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T  L  +  + + G  P ++ +  L+ + C++ +++++Q +FD+     L  T  ++ ++
Sbjct: 448 TYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSM 507

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I G+CK        R+   M  +G + D  TY ALI+GLCKE+RL++A  L   M ++ L
Sbjct: 508 IAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRL 567

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P +V   TL   +C+  +  +A        I+D +     N    T  +L+      G 
Sbjct: 568 VPCEVTPVTLAFEYCRREKAVVAVS------ILDRLDKRRKNH---TVNVLVRKLSAIGH 618

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           +E A    K+ +   + +D +A+T+ I+  C   K       + E +      D A  T
Sbjct: 619 VEDASLFLKKALDVDLAVDRLAYTSFINS-CYANKKYALATEISEKISSSQDKDAAAMT 676


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 181/345 (52%), Gaps = 17/345 (4%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           IL  GY P +  +  L+  LC E +I  A ++F    K G    A+++ TL+ G C+  N
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGN 216

Query: 180 LDEGFRLK------SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +    +L       S + G   +P V +YS +I+ LCK+ R D+A  L  EM  +G+TP 
Sbjct: 217 ISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPT 276

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + +T+LI G C  G+ +      EA+++ +EM   G+ P+ +T+ +L+D  CKEG +  
Sbjct: 277 VISYTSLIHGFCCGGKWE------EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIE 330

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A D+ + MI+RGI  + + + +LI GFC  G +  A  +   M   G +PD   YT++I+
Sbjct: 331 AKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLIN 390

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +CK    +   +L   M   G  P V+TY AL+ GL + G++ +A  L   M   G+  
Sbjct: 391 GYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPG 450

Query: 414 DDITYNILLEGHCKHG----NPEDFDKLQSEKGLVSDYACYTSLV 454
           D   Y I L G CK+G      E F+KL+S   +  D  C+  L+
Sbjct: 451 DLYIYGIFLNGLCKNGCLFEAMELFNKLKS-YNIKLDIECFNCLI 494



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 202/365 (55%), Gaps = 17/365 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILD----YG--YSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
           L+  + RT   ++ L  + E+L+    YG  + P V  +++++  LCK+ +  +A+ +F+
Sbjct: 207 LMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFE 266

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   +G+  T +S+ +LI+G C     +E  RL + M   G++P+V T++ LI+ LCKE 
Sbjct: 267 EMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEG 326

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           ++ +A+ LL  M +RG+ PN + + +LI+G C      + GD+  AR++   M + G  P
Sbjct: 327 KVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC------LVGDLNSARELFVSMPSKGCEP 380

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D I YT+L++G+CK   +E A+ +   M++ G   D   + AL++G  +GGKV +A+++ 
Sbjct: 381 DVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLF 440

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M   G+  D   Y + ++  CKNG       L  +++S      +E +N L++GLCK 
Sbjct: 441 GVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKA 500

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           G+L+ A  L + +    + PD +TYNI++   C+ G        F K++ + G   D   
Sbjct: 501 GKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKME-KNGCTPDKIT 559

Query: 450 YTSLV 454
           Y +L+
Sbjct: 560 YATLI 564



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 179/339 (52%), Gaps = 10/339 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK---RGLHATAVSFNTLINGHCKAKNLD 181
           YS      +   H L    KIK    VF  + +    G+     + N L+N  C    + 
Sbjct: 89  YSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVG 148

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EG  + + +   G  PD+ TY+ LI GLC E+R+  A LL   M + G TPN + + TL+
Sbjct: 149 EGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLM 208

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLESALDIRK 299
            G C+ G I +A  +K  ++++++    G+N  P  I+Y+I++D  CK+   + A D+ +
Sbjct: 209 KGLCRTGNISIA--LKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFE 266

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  +G+    +++T+LI GFC GGK  EA+R+  EM+  G++P+  T+ ++ID  CK G
Sbjct: 267 EMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEG 326

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  LL+ M   G +P + TYN+L+ G C  G L +A  L  +M   G  PD I Y 
Sbjct: 327 KVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYT 386

Query: 420 ILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           +L+ G+CK    E+  KL +   + G   D   Y +L++
Sbjct: 387 VLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLT 425



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 154/296 (52%), Gaps = 6/296 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G  P+V  FNVL+  LCKEGK+ +A+ + +   +RG+    +++N+LI G C   
Sbjct: 302 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 361

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    L   M   G  PDV  Y+ LING CK +++++A  L + M + G  P+   + 
Sbjct: 362 DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYG 421

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+ G  + G++   GD   A+K+   M   G+  D   Y I L+G CK G L  A+++ 
Sbjct: 422 ALLTGLFQGGKV---GD---AKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELF 475

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++    I+LD   F  LI G C+ GK+  A  +  ++ +  L+PD  TY ++I  FC+ 
Sbjct: 476 NKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRG 535

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           G       L ++M  +G  P   TY  L+ G  +  +L+    LL  M+   V  D
Sbjct: 536 GQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLD 591



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 61/127 (48%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L +A++ F  L+ +  ++      CLID + +          + ++      P V  +
Sbjct: 466 GCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTY 525

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+++H+ C+ G++  A ++F +  K G     +++ TLI G  ++K L++   L  +M  
Sbjct: 526 NIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 585

Query: 193 SGMRPDV 199
             +  DV
Sbjct: 586 RDVSLDV 592


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 173/315 (54%), Gaps = 6/315 (1%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   +GF  ++   G  P V  +N LM  LCK G+  +A+ +FD   KRGL     ++ T
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCT 341

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G+     L E   L  +M  +G+ PD + ++ LI    K+ ++D+A L+  +M + G
Sbjct: 342 LLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHG 401

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN V +  +I   CK+G +D      +A    ++M   GL P+ I YT L+   C   
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVD------DAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFD 455

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             + A ++  EM+ RGI L+ + F ++I   C+ G+V+E+E++   M+++G+KP+  TY+
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +ID +C  G      +LL  M S G  P   TYN L+NG C+  ++ +A  L   M+  
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 410 GVVPDDITYNILLEG 424
           GV P+ ITYNI+L+G
Sbjct: 576 GVSPNIITYNIILQG 590



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 170/330 (51%), Gaps = 9/330 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  +VFN+L+    K+ K+ +A +VF +  + GL+   V++  +I   CK+ ++D+ 
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDA 425

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M   G+ P++  Y++LI+ LC  ++ D AE L+ EM +RG+  N + F ++I  
Sbjct: 426 MLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHS 485

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ P+ ITY+ L+DG+C  G ++ A  +   M  
Sbjct: 486 HCKEGRV------IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFS 539

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+CR  ++ +A  + +EM+  G+ P+  TY +++        T  
Sbjct: 540 VGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 599

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+     A  +   +    +  +  T+NI++ 
Sbjct: 600 AKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 659

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACY 450
              K G  ++   L    S  GLV +Y  Y
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 157/314 (50%), Gaps = 6/314 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P V  +  +++   KEG    A   + E   R +    V+++++I   CK + +D+ 
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M  +G+ P+  TY+++++G C   +  +A   L +M   G+ P+ V + +L+D 
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKNGR        EARKI D M   GL PD  TY  LL G+  +G L     +   M++
Sbjct: 311 LCKNGR------STEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVR 364

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  D+  F  LI  + +  KV EA  +  +M + GL P+  TY  VI   CK+G    
Sbjct: 365 NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDD 424

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                ++M  +G  P +  Y +L++ LC   +   A  L+  MLD G+  + I +N ++ 
Sbjct: 425 AMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIH 484

Query: 424 GHCKHGNPEDFDKL 437
            HCK G   + +KL
Sbjct: 485 SHCKEGRVIESEKL 498



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 205/439 (46%), Gaps = 26/439 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           Y++++ +L  +   ++AR +   + +K+G+    + + ++L+                  
Sbjct: 304 YNSLMDYLCKNGRSTEARKIFDSM-TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLM 362

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
              G H    V + L+  Y     +D+A+  F  +R+H           +I  + ++   
Sbjct: 363 VRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSV 422

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              + ++ +++D G +P++ V+  L+H LC   K   A+ +  E   RG+    + FN++
Sbjct: 423 DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSI 482

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+ HCK   + E  +L  +M   G++P+V TYS LI+G C   ++D+A  LL  M   G+
Sbjct: 483 IHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGM 542

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + TLI+G+C+  R+D      +A  +  EM ++G++P+ ITY I+L G      
Sbjct: 543 KPDCVTYNTLINGYCRVSRMD------DALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
             +A ++   + K G +L+   +  ++ G C+     EA RM + +    L+ +  T+ +
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 656

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I    K G       L     S+G +P   TY  +   +   G L+  + L  +M D G
Sbjct: 657 MIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNG 716

Query: 411 VVPDDITYNILLEGHCKHG 429
              D    N ++    + G
Sbjct: 717 CTVDSGMLNFIVRELLQRG 735



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 161/318 (50%), Gaps = 14/318 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC 175
           E+L  G   S+Y  N  +  + +      A   ++   + G   +  T  ++  LI   C
Sbjct: 40  ELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYGILIGCCC 98

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPND 234
           +A  LD GF     +   G R +  T++ L+ GLC + R  DA +++L  M E    P+ 
Sbjct: 99  RAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDV 158

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GLNPDKITYTILLDGFCKEGDL 291
              T L+ G C   R       +EA +++  M  +   G  PD ++YT +++GF KEGD 
Sbjct: 159 FSCTILLKGLCDENR------SQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDS 212

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A     EM+ R I  D V ++++I+  C+G  + +A  +L  M+K G+ P+  TY  +
Sbjct: 213 DKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSI 272

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +  +C +   K     LK+MRSDG  P V TYN+LM+ LCK+G+   A  + D+M   G+
Sbjct: 273 LHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGL 332

Query: 412 VPDDITYNILLEGHCKHG 429
            PD  TY  LL+G+   G
Sbjct: 333 EPDIATYCTLLQGYATKG 350



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 146/291 (50%), Gaps = 7/291 (2%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+LD G   +   FN ++H  CKEG++ +++ +FD   + G+    ++++TLI+G+C A
Sbjct: 465 LEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLA 524

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +DE  +L S M   GM+PD  TY+ LING C+ +R+DDA  L  EM   G++PN + +
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             ++ G     R         A+++   +  +G   +  TY I+L G CK    + AL +
Sbjct: 585 NIILQGLFHTRRT------AAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRM 638

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            + +    ++L+   F  +I    + G+  EA+ +       GL P+  TY ++ +    
Sbjct: 639 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            G  +   +L   M  +G        N ++  L + G++  A   L +M+D
Sbjct: 699 QGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL-SMID 748



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 136/315 (43%), Gaps = 44/315 (13%)

Query: 146 KDAQMVFDEFGKRGLHATAVSFNTL---INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
           +DA+ VFDE  +RG  A+    N     +  H  A  +    R+     G  + P V+TY
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGK-VTPTVHTY 90

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
             LI   C+  RLD     L  + ++G     + FT L+ G C + R   A D+   R++
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIV-LRRM 149

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            +  C     PD  + TILL G C E   + AL++   M                    R
Sbjct: 150 TELSCM----PDVFSCTILLKGLCDENRSQEALELLHMMADD-----------------R 188

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           GG               G  PD  +YT VI+ F K GD+   +    EM      P V T
Sbjct: 189 GG---------------GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVT 233

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQS 439
           Y++++  LCK   +  A  +L TM+  GV+P+ +TYN +L G+C    P++   F K   
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMR 293

Query: 440 EKGLVSDYACYTSLV 454
             G+  D   Y SL+
Sbjct: 294 SDGVEPDVVTYNSLM 308



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 71/186 (38%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  +  +DDA+  F+ +              ++  +  T         Y+ I   G    
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE 615

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N+++H LCK     +A  +F       L     +FN +I    K    DE   L  
Sbjct: 616 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFV 675

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
               +G+ P+ +TY  +   +  +  L++ + L   M + G T +  +   ++    + G
Sbjct: 676 AFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRG 735

Query: 249 RIDMAG 254
            I  AG
Sbjct: 736 EITRAG 741


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 188/362 (51%), Gaps = 36/362 (9%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ + +NV++  + + G+  DA  VFDE  +R +    +++NT+I+GH K  +L+ GFRL
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M   G++P+  TY+ L++GLC+  R+ +   LL EM  + + P+   ++ L DG  +
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           NG                                  G +  A +++  +   GL P ++ 
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++G+C+ G+LE A     +M  R I+ D++ + ALI+G C+  ++  A+ +L EM 
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G+ P   T+  +ID + + G  +  F +L EM+ +G  P V +Y +++N  CK+G++ 
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 312

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-----FDKLQSEKGLVSDYACYTS 452
            A  +LD M    V+P+   YN +++ + +HG P D      +K++S  G+      Y  
Sbjct: 313 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG-PNDQAFILVEKMKS-NGISPSIVTYNL 370

Query: 453 LV 454
           L+
Sbjct: 371 LI 372



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 191/375 (50%), Gaps = 34/375 (9%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  +++ +G  P+   +NVL+  LC+ G++ +   + DE   + +     +++ L +
Sbjct: 69  GFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 128

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +  +      L      +G+    YT S L+NGLCK+ ++  AE +L  +   GL P
Sbjct: 129 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 188

Query: 233 NDVIFTTLIDGHCKNGRIDMA----GDMKE-------------------------ARKIV 263
             VI+ TLI+G+C+ G ++ A    G MK                          A+ ++
Sbjct: 189 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 248

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM  NG+NP   T+  L+D + + G LE    +  EM + G++ + V++ ++++ FC+ 
Sbjct: 249 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 308

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           GK+ EA  +L +M    + P+   Y  +ID + ++G     F L+++M+S+G  P++ TY
Sbjct: 309 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 368

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSE 440
           N L+ GLC   Q+  A  +++++ +  ++PD ++YN L+   C  GN +   D  +   +
Sbjct: 369 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 428

Query: 441 KGLVSDYACYTSLVS 455
            G+ S    Y  L+S
Sbjct: 429 YGIKSTVRTYHQLIS 443



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 175/376 (46%), Gaps = 41/376 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + R       L  + + L  G +   Y  ++L++ LCK+GK+  A+ V       G
Sbjct: 126 LFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG 185

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+   L+  F     M+   ++PD  TY+ALINGLCK  R+ +A+
Sbjct: 186 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 245

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM + G+ P    F TLID + + G+++      +   ++ EM  NGL P+ ++Y 
Sbjct: 246 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE------KCFIVLSEMQENGLKPNVVSYG 299

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR----------------------------------- 304
            +++ FCK G +  A+ I  +M  +                                   
Sbjct: 300 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 359

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           GI    V +  LI G C   ++ EAE ++  +    L PD  +Y  +I   C  G+    
Sbjct: 360 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 419

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L + M   G    V TY+ L++GL   G+L     L   M+   VVP +  +NI++E 
Sbjct: 420 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 479

Query: 425 HCKHGNPEDFDKLQSE 440
           + K+GN    + L+ E
Sbjct: 480 YSKYGNEIKAEDLRKE 495



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 34/292 (11%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM---- 252
           P+ ++Y+ +I G+ +  R  DA  +  EM ER + PN + + T+IDGH K G ++     
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 253 -------------------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
                                    AG M E   ++DEM +  + PD  TY+IL DG  +
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            GD ++ L +  + +K G+ + +   + L++G C+ GKV  AE +L+ ++  GL P    
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  +I+ +C+ G+ +  F    +M+S    P   TYNAL+NGLCK  ++ NA  LL  M 
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 408 DLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           D GV P   T+N L++ + + G  E       ++Q E GL  +   Y S+V+
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ-ENGLKPNVVSYGSIVN 303



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 153/312 (49%), Gaps = 6/312 (1%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++ + L+  Y   G L+ A   F  ++  + +        LI+ + +    T      +E
Sbjct: 191 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 250

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + D G +P+V  FN L+    + G+++   +V  E  + GL    VS+ +++N  CK   
Sbjct: 251 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 310

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M    + P+   Y+A+I+   +    D A +L+ +M   G++P+ V +  
Sbjct: 311 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 370

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C   +I       EA +I++ +  + L PD ++Y  L+   C  G+++ ALD+++
Sbjct: 371 LIKGLCNQSQI------SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 424

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M K GI+     +  LISG    G++ E E + ++M++  + P +A + ++++ + K G
Sbjct: 425 RMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYG 484

Query: 360 DTKTGFRLLKEM 371
           +      L KEM
Sbjct: 485 NEIKAEDLRKEM 496


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 158/272 (58%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G  P+   + VL++  CK G+++ A+M+  +   +G+    + FNT+I+G+C+  
Sbjct: 307 ECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG 366

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+  ++K+ ME  G+  D+YTY+ L  GLC+ NRLD+A+ LLH M E G+ PN V +T
Sbjct: 367 MVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYT 426

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  HCK+      GDM EAR++  EM   G  P  +TY +++DG+ K+G +  A   R
Sbjct: 427 TLISIHCKD------GDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFR 480

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM K+G   D   + +L+ G C  GKV  A ++  EM + G +P+   YT +I    K 
Sbjct: 481 KEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKE 540

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L  +M   G +P    Y+AL+  L
Sbjct: 541 GRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 572



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 203/419 (48%), Gaps = 21/419 (5%)

Query: 47  ASILETRGTHLPGLVLDALMIVYVD----LGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A +LE      PG V      V VD     G +DDA +    + +H   + A     L+D
Sbjct: 161 AGLLERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLD 220

Query: 103 RMMRTNLPTVTLGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
             +R        G   EIL+     G   +V  + +L+  L     I   + +F+E    
Sbjct: 221 CYVRQK----DDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKAN 276

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +      +  +IN +C+A N+    ++     G+G+ P+  TY  LING CK  +++ A
Sbjct: 277 NVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAA 336

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           E+LL +M  +G+  N +IF T+IDG+C+ G +D      +A KI   M   G+  D  TY
Sbjct: 337 EMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVD------DALKIKAAMEKMGVELDIYTY 390

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L  G C+   L+ A  +   MI+ G+  + V +T LIS  C+ G +VEA R+ REM +
Sbjct: 391 NTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAE 450

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G  P   TY ++ID + K G  +   R  KEM   G +P V TY +L++G C +G++  
Sbjct: 451 KGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDV 510

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           A  L + M   G  P+ + Y  L+ G  K G  E   +L  +    GL+ D + Y++LV
Sbjct: 511 ALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 569



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 186/372 (50%), Gaps = 44/372 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           S S    +V++  LCK G++ DA+ + D+  + G+   A+ +N+L++ + + K+      
Sbjct: 174 SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 233

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +ME  G+   V TY+ L++ L     +   E L +EM    +  +  ++T +I+ +C
Sbjct: 234 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYC 293

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL----------------------- 282
           +      AG+M+ A K++DE   NG+ P++ TY +L+                       
Sbjct: 294 R------AGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQG 347

Query: 283 ------------DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                       DG+C++G ++ AL I+  M K G+ELD   +  L  G CR  ++ EA+
Sbjct: 348 VGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAK 407

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L  M+++G+ P+  TYT +I   CK+GD     RL +EM   G  P+V TYN +++G 
Sbjct: 408 TLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGY 467

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
            K G ++ A      M   G VPD  TY  L+ GHC +G  +   KL  E   +G   + 
Sbjct: 468 TKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNV 527

Query: 448 ACYTSLVSKSSK 459
             YT+L+S  +K
Sbjct: 528 VAYTALISGLAK 539



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 76/137 (55%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+ + G +PSV  +NV++    K+G I++A+    E  K+G      ++ +L++GHC
Sbjct: 444 LFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHC 503

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +D   +L   M+  G  P+V  Y+ALI+GL KE R + A  L  +M + GL P+D 
Sbjct: 504 VNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDS 563

Query: 236 IFTTLIDGHCKNGRIDM 252
           +++ L+     + R D+
Sbjct: 564 LYSALVGSLHTDNRKDV 580


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       L  + ++L    +P+ + FN +++ LCK G++ +A+     F + G
Sbjct: 505 LIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEG 564

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + +++N++++G  K  N+D    +   M   G+ P+V TY++LING CK NR+D A 
Sbjct: 565 FIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLAL 624

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
               EM E+GL  +   ++ LIDG CK        DM+ A+ +  E+   GL+P++I Y 
Sbjct: 625 KTRDEMREKGLELDVTAYSALIDGFCKRR------DMESAQDLFFELLEVGLSPNRIVYN 678

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ GF    ++E+AL   K+MI   I  D   +T LI G  + G++V A  +  EML  
Sbjct: 679 SMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSK 738

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ PD  T+ ++++  C  G  +   ++L+EM      P+V  YN L+ G  + G LK A
Sbjct: 739 GIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEA 798

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCK 427
             L D MLD G+VPDD+TY+IL+ G  K
Sbjct: 799 FTLHDEMLDRGLVPDDVTYDILINGKFK 826



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 198/408 (48%), Gaps = 68/408 (16%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +D G + +++ +N++M  LCK GK+ +A  + D    +G+    VS+N +I GHC+  
Sbjct: 420 EAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKG 478

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D    + S M    ++P+V TYS LI+G  K+   + A  L  +M    + P D  F 
Sbjct: 479 NMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFN 538

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           T+I+G CK G++  A                             G++  A  +  EMC  
Sbjct: 539 TIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEF 598

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G++P+ +TYT L++GFCK   ++ AL  R EM ++G+ELD  A++ALI GFC+   +  A
Sbjct: 599 GVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESA 658

Query: 330 ERMLREMLKVGLKP-----------------------------------DDATYTMVIDC 354
           + +  E+L+VGL P                                   D  TYT +ID 
Sbjct: 659 QDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDG 718

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             K G       L  EM S G +P + T++ L+NGLC  GQL+NA  +L+ M    + P 
Sbjct: 719 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPS 778

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            + YN L+ G+ + GN ++   L  E   +GLV D   Y  L++   K
Sbjct: 779 VLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFK 826



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 219/487 (44%), Gaps = 47/487 (9%)

Query: 9   AYSTMVHFLV-AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---HLPGLVLDA 64
           AY  ++H L+ + + H  AR LL+  VS     S       ++         L   V + 
Sbjct: 96  AYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNY 155

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+  Y+    +++AI CF  +              L+  ++R N+       Y +++  G
Sbjct: 156 LLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRG 215

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
                +  +V++    KEG++++A+  F E  +RG+   A +++ +I   CK  N + G 
Sbjct: 216 IYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGL 275

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M+  G  P   T++++I     +  + +A  L  EM   G   N V+ T+L+ G+
Sbjct: 276 ELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGY 335

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C  G +D       A  + +++  +GL P+K+TY++L++G C  G++E A ++  +M   
Sbjct: 336 CAQGNLD------SALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLN 389

Query: 305 GIELDNVAFTALISGF----------------------------------CRGGKVVEAE 330
           GI        +L+ G+                                  C+GGK+ EA 
Sbjct: 390 GIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEAC 449

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L  M+  G+ P+  +Y  +I   C+ G+      +  +M +    P V TY+ L++G 
Sbjct: 450 SLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGN 509

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN-PEDFDKLQS--EKGLVSDY 447
            K G  + A  L D ML L + P D T+N ++ G CK G   E  DKL++  E+G +   
Sbjct: 510 FKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSC 569

Query: 448 ACYTSLV 454
             Y S+V
Sbjct: 570 MTYNSIV 576



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 177/346 (51%), Gaps = 10/346 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G   ++ V   LM   C +G +  A  +F++  + GL    V+++ LI G C + 
Sbjct: 315 EMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSG 374

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+++   L + M+ +G+ P V+  ++L+ G  K    ++A  L  E  + G+  N   + 
Sbjct: 375 NIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYN 433

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            ++   CK G++D      EA  ++D M   G+ P+ ++Y  ++ G C++G+++ A  + 
Sbjct: 434 IMMSWLCKGGKMD------EACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 487

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M+ R ++ + V ++ LI G  + G   +A  +  +ML + + P D T+  +I+  CK 
Sbjct: 488 SDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKV 547

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G        LK    +G +P+  TYN++++G  K G + +A  +   M + GV P+ +TY
Sbjct: 548 GQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTY 607

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYR 461
             L+ G CK    +   K +    EKGL  D   Y++L+    K R
Sbjct: 608 TSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRR 653



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 121/270 (44%), Gaps = 64/270 (23%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
            L+ G+ PS   +N ++    KEG I  A  V+ E  + G+    V++ +LING CK+  
Sbjct: 560 FLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNR 619

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF-- 237
           +D   + +  M   G+  DV  YSALI+G CK   ++ A+ L  E+ E GL+PN +++  
Sbjct: 620 IDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNS 679

Query: 238 ---------------------------------TTLIDGHCKNGRIDMA----------- 253
                                            TTLIDG  K GR+  A           
Sbjct: 680 MISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKG 739

Query: 254 ------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
                             G ++ ARKI++EM    + P  + Y  L+ G+ +EG+L+ A 
Sbjct: 740 IVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAF 799

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGK 325
            +  EM+ RG+  D+V +  LI+G  +G +
Sbjct: 800 TLHDEMLDRGLVPDDVTYDILINGKFKGDR 829



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 5/181 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           ++ M S+  LF  +LE  G     +V ++++  + DL  ++ A+  ++ +     RIP  
Sbjct: 652 RRDMESAQDLFFELLEV-GLSPNRIVYNSMISGFRDLNNMEAALVWYKKMIND--RIPCD 708

Query: 96  --GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 LID +++          Y+E+L  G  P +  F+VL++ LC +G++++A+ + +
Sbjct: 709 LGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILE 768

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E  ++ +  + + +NTLI G+ +  NL E F L   M   G+ PD  TY  LING  K +
Sbjct: 769 EMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGD 828

Query: 214 R 214
           R
Sbjct: 829 R 829


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 173/315 (54%), Gaps = 6/315 (1%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   +GF  ++   G  P V  +N LM  LCK G+  +A+ +FD   KRGL     ++ T
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCT 341

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L+ G+     L E   L  +M  +G+ PD + ++ LI    K+ ++D+A L+  +M + G
Sbjct: 342 LLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHG 401

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN V +  +I   CK+G +D      +A    ++M   GL P+ I YT L+   C   
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVD------DAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFD 455

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             + A ++  EM+ RGI L+ + F ++I   C+ G+V+E+E++   M+++G+KP+  TY+
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +ID +C  G      +LL  M S G  P   TYN L+NG C+  ++ +A  L   M+  
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 410 GVVPDDITYNILLEG 424
           GV P+ ITYNI+L+G
Sbjct: 576 GVSPNIITYNIILQG 590



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 169/331 (51%), Gaps = 9/331 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  +VFN+L+    K+ K+ +A +VF +  + GL+   V++  +I   CK+ ++D+ 
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDA 425

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M   G+ P++  Y++LI+ LC  ++ D AE L+ EM +RG+  N + F ++I  
Sbjct: 426 MLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHS 485

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           HCK GR+       E+ K+ D M   G+ P+ ITY+ L+DG+C  G ++ A  +   M  
Sbjct: 486 HCKEGRV------IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFS 539

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D V +  LI+G+CR  ++ +A  + +EM+  G+ P+  TY +++        T  
Sbjct: 540 VGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 599

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L   +   G    + TYN +++GLCK+     A  +   +    +  +  T+NI++ 
Sbjct: 600 AKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 659

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
              K G     +D     S  GLV D   Y+
Sbjct: 660 ALLKVGRNDEAKDLFAALSANGLVPDVRTYS 690



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 157/314 (50%), Gaps = 6/314 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P V  +  +++   KEG    A   + E   R +    V+++++I   CK + +D+ 
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M  +G+ P+  TY+++++G C   +  +A   L +M   G+ P+ V + +L+D 
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKNGR        EARKI D M   GL PD  TY  LL G+  +G L     +   M++
Sbjct: 311 LCKNGR------STEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVR 364

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  D+  F  LI  + +  KV EA  +  +M + GL P+  TY  VI   CK+G    
Sbjct: 365 NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDD 424

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                ++M  +G  P +  Y +L++ LC   +   A  L+  MLD G+  + I +N ++ 
Sbjct: 425 AMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIH 484

Query: 424 GHCKHGNPEDFDKL 437
            HCK G   + +KL
Sbjct: 485 SHCKEGRVIESEKL 498



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 162/320 (50%), Gaps = 14/320 (4%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLING 173
           + E+L  G   S+Y  N  +  + +      A   ++   + G   +  T  ++  LI  
Sbjct: 38  FEELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYGILIGC 96

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTP 232
            C+A  LD GF     +   G R +  T++ L+ GLC + R  DA +++L  M E    P
Sbjct: 97  CCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMP 156

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GLNPDKITYTILLDGFCKEG 289
           +    T L+ G C   R       +EA +++  M  +   G  PD ++YT +++GF KEG
Sbjct: 157 DVFSCTILLKGLCDENR------SQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEG 210

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           D + A     EM+ R I  D V ++++I+  C+G  + +A  +L  M+K G+ P+  TY 
Sbjct: 211 DSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            ++  +C +   K     LK+MRSDG  P V TYN+LM+ LCK+G+   A  + D+M   
Sbjct: 271 SILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR 330

Query: 410 GVVPDDITYNILLEGHCKHG 429
           G+ PD  TY  LL+G+   G
Sbjct: 331 GLEPDIATYCTLLQGYATKG 350



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 148/291 (50%), Gaps = 7/291 (2%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+LD G   +   FN ++H  CKEG++ +++ +FD   + G+    ++++TLI+G+C A
Sbjct: 465 LEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLA 524

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +DE  +L S M   GM+PD  TY+ LING C+ +R+DDA  L  EM   G++PN + +
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             ++ G     R         A+++   +  +G   +  TY I+L G CK    + AL +
Sbjct: 585 NIILQGLFHTRRT------AAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRM 638

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            + +    ++L+   F  +I    + G+  EA+ +   +   GL PD  TY+++ +   +
Sbjct: 639 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 698

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            G  +    L   M  +G        N+++  L + G +  A   L +M+D
Sbjct: 699 QGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL-SMID 748



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 136/315 (43%), Gaps = 44/315 (13%)

Query: 146 KDAQMVFDEFGKRGLHATAVSFNTL---INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
           +DA+ VF+E  +RG  A+    N     +  H  A  +    R+     G  + P V+TY
Sbjct: 32  EDARHVFEELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGK-VTPTVHTY 90

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
             LI   C+  RLD     L  + ++G     + FT L+ G C + R   A D+   R++
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIV-LRRM 149

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            +  C     PD  + TILL G C E   + AL++   M                    R
Sbjct: 150 TELSCM----PDVFSCTILLKGLCDENRSQEALELLHMMADD-----------------R 188

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           GG               G  PD  +YT VI+ F K GD+   +    EM      P V T
Sbjct: 189 GG---------------GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVT 233

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQS 439
           Y++++  LCK   +  A  +L TM+  GV+P+ +TYN +L G+C    P++   F K   
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMR 293

Query: 440 EKGLVSDYACYTSLV 454
             G+  D   Y SL+
Sbjct: 294 SDGVEPDVVTYNSLM 308



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  +  +DDA+  F+ +              ++  +  T         Y+ I   G    
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE 615

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N+++H LCK     +A  +F       L     +FN +I    K    DE   L +
Sbjct: 616 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFA 675

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +  +G+ PDV TYS +   L ++  L++ + L   M E G T N  +  +++    + G
Sbjct: 676 ALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG 735

Query: 249 RIDMAG 254
            I  AG
Sbjct: 736 DITRAG 741



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 70/149 (46%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R +     L  + E++  G SP++  +N+++  L    +   A+ ++    K G
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++N +++G CK    DE  R+   +  + ++ +  T++ +I  L K  R D+A+
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            L   +   GL P+   ++ + +   + G
Sbjct: 672 DLFAALSANGLVPDVRTYSLMAENLIEQG 700


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 209/414 (50%), Gaps = 30/414 (7%)

Query: 65  LMIVY--VDLGFLDDAIQCFRLLR--------KHYFRIPARGCRCLI-------DRMMRT 107
           LM+ Y  V+ G L D   C R+L+             + +   +C I       + MM +
Sbjct: 157 LMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDS 216

Query: 108 NLPTVTLGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
                 +G  +E+LD    +G  P+   +NVL++ L  +G+   A+ + ++    GL  +
Sbjct: 217 RCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVS 276

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
           A ++N LI G CK +  +E   L+  M G G  P V TY+ ++  LC+  R+ DA   L 
Sbjct: 277 AHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLD 336

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
            M    L P+ V + TLI G+ +       G+  EA  +  E+ +  L P  +TY  L+D
Sbjct: 337 VMVNEDLMPDLVSYNTLIYGYSR------LGNFAEALLLFSELRSKNLVPSVVTYNTLID 390

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G C+ G+L+ A  ++ +MIK G+  D V FT L+ GFC+ G +  A+ +  EML  GLKP
Sbjct: 391 GGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKP 450

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D   YT  I    K G+    F + +EM+++G  P + TYN L+NGLCK G   +AN L+
Sbjct: 451 DCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELV 510

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             M   G+VPD +TY  ++  H   G     +++ S+   KG+      YT L+
Sbjct: 511 QKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLI 564



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 180/349 (51%), Gaps = 11/349 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P+V  +N +M+ LC+ G++ DA+   D      L    VS+NTLI G+ +  
Sbjct: 302 EMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLG 361

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N  E   L S +    + P V TY+ LI+G C+   LD A+ +  +M + GL P+ V FT
Sbjct: 362 NFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFT 421

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+ G C+ G + MA      +++ DEM + GL PD I YT  + G  K G+   A  ++
Sbjct: 422 ILVRGFCQMGNLPMA------KELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMK 475

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM   G   D + +  LI+G C+ G   +A  ++++M   G+ PD  TYT +I     +
Sbjct: 476 EEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLIS 535

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    +  +M   G  P+V TY  L++     G+L  A    D M D GV P+ ITY
Sbjct: 536 GLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSS--KYRQ 462
           N L+ G CK    +    L +E   KG+  +   YT L++++S  +Y Q
Sbjct: 596 NALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQ 644



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 196/446 (43%), Gaps = 57/446 (12%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDL---------LHLIVS---------KKGMGSSAS 44
            +++ H Y+ ++      +M  +A DL         L  +V+         + G  S A 
Sbjct: 273 LKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDAR 332

Query: 45  LFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
            +  ++      +P LV  + L+  Y  LG   +A+  F  LR             LID 
Sbjct: 333 RYLDVMVNEDL-MPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDG 391

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
             RT    +  G   +++ +G  P V  F +L+   C+ G +  A+ +FDE   RGL   
Sbjct: 392 GCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPD 451

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            +++ T I G  K  N  + F +K  M+  G  PD+ TY+ LINGLCK    DDA  L+ 
Sbjct: 452 CIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQ 511

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------G 254
           +M   G+ P+ V +T++I  H  +G +  A                             G
Sbjct: 512 KMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRG 571

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            +  A+K  DEM   G++P+ ITY  L+ G CKE  ++ A ++  EM  +G+  +   +T
Sbjct: 572 RLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYT 631

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI+         +A ++ ++ML   +KPD  T++ ++    K+      ++LL  +R +
Sbjct: 632 ILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKD------YKLLAVLRLE 685

Query: 375 GHLPAVETYNA--LMNGLCKHGQLKN 398
               A+   N+  +  G  K  + KN
Sbjct: 686 NLPLAIVEINSTWIAEGFVKLEESKN 711


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 173/329 (52%), Gaps = 9/329 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++   Y+P V  + +++  LCK   I+ A  V  +  + G      ++N LI G C  +
Sbjct: 348 DMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVR 407

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E   L ++ME  G+ P++YTY+ L +GLCK  RLD A+ + +E   RGL PN V + 
Sbjct: 408 RPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYN 467

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL++G+C+  R+       EA  I+ EM  N   PD +TYT L+ G  +   L  AL + 
Sbjct: 468 TLLNGYCRGSRL------IEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMH 521

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  +G +++      L  G  R G   +A    R M   G     + Y + I C    
Sbjct: 522 DEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTA 581

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    LL EM + G+ P + TYN ++ G C+ G+L +A+ +L+ M++ G+ PD  +Y
Sbjct: 582 GEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSY 641

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLV 444
           NIL++     G  +D D+L +   E+G+V
Sbjct: 642 NILIKEFHNQGRTQDADQLYATALERGVV 670



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 143/303 (47%), Gaps = 8/303 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY  +   +  ++  L +     + Q +  +   +G   T    ++ +  + ++    E 
Sbjct: 211 GYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKES 270

Query: 184 FRLKSVMEGSGMRPDVY--TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               ++M+  G  P +    Y++++  L K  +LD AE L  +M   G++ N++ +T++I
Sbjct: 271 LEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMI 330

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
              C      +   M++A K++D+M  N   PD +TYTI++   CK   +E A  + ++M
Sbjct: 331 --QC----FFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKM 384

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + G E +   + ALI G C   +  EA  ++  M + G+ P+  TYT++    CK    
Sbjct: 385 RENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRL 444

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                +  E  + G  P   TYN L+NG C+  +L  A  +L  M      PD +TY  L
Sbjct: 445 DRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTL 504

Query: 422 LEG 424
           ++G
Sbjct: 505 IQG 507



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 135/300 (45%), Gaps = 12/300 (4%)

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
           H T   F T+I+   +AK   E   L   M+  G         + +    +  R  ++  
Sbjct: 214 HNTDAYF-TMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLE 272

Query: 221 LLHEMCERGLTPN--DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             + M E G  P   D  + +++    KN ++DMA        +  +M  NG++ + +TY
Sbjct: 273 AFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMA------ENLFAQMINNGVSCNNLTY 326

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T ++  F  +  +E A+ +  +MI+     D V +T +IS  C+   + +A  +L++M +
Sbjct: 327 TSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRE 386

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G +P+  TY  +I   C     +    L+  M   G  P + TY  L +GLCK  +L  
Sbjct: 387 NGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDR 446

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
           A  + +  L  G+ P+ +TYN LL G+C+        D  K   +     D+  YT+L+ 
Sbjct: 447 AKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQ 506



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 106/256 (41%), Gaps = 76/256 (29%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA------ 177
           G  P++Y + +L H LCK  ++  A+ +F+E   RGL    V++NTL+NG+C+       
Sbjct: 423 GVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEA 482

Query: 178 -----------------------------KNLDEGFRLKSVMEGSG-------------- 194
                                          L +  R+   ME  G              
Sbjct: 483 MDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARG 542

Query: 195 ----------------MRPDVYTYSA-----LINGLCKENRLDDAELLLHEMCERGLTPN 233
                           M+   + YSA      I+ L     +++A+ LL+EM  +G +PN
Sbjct: 543 LARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPN 602

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              + T+I G C+ GR+D      +A  +++ M  NG+ PD  +Y IL+  F  +G  + 
Sbjct: 603 LTTYNTMIKGFCRQGRLD------DADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQD 656

Query: 294 ALDIRKEMIKRGIELD 309
           A  +    ++RG+ L+
Sbjct: 657 ADQLYATALERGVVLN 672



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  +++ N     L  + E+ + GY  +    N+L   L + G  KDA + +     RG
Sbjct: 504 LIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRG 563

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              +A  +   I+    A  ++E   L   M   G  P++ TY+ +I G C++ RLDDA+
Sbjct: 564 FAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDAD 623

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
            +L+ M E G+ P+   +  LI      GR   A  +
Sbjct: 624 AMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQL 660



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           FY  + D G++ S   + + +H L   G++++AQ +  E   +G      ++NT+I G C
Sbjct: 555 FYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFC 614

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPN 233
           +   LD+   + + M  +G+ PD  +Y+ LI     + R  DA+ L     ERG  L P 
Sbjct: 615 RQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVVLNPK 674

Query: 234 DVI 236
            VI
Sbjct: 675 PVI 677


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       L  + ++L    +P+ + FN +++ LCK G++ +A+     F + G
Sbjct: 545 LIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEG 604

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + +++N++++G  K  N+D    +   M   G+ P+V TY++LING CK NR+D A 
Sbjct: 605 FIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLAL 664

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
               EM E+GL  +   ++ LIDG CK        DM+ A+ +  E+   GL+P++I Y 
Sbjct: 665 KTRDEMREKGLELDVTAYSALIDGFCKRR------DMESAQDLFFELLEVGLSPNRIVYN 718

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ GF    ++E+AL   K+MI   I  D   +T LI G  + G++V A  +  EML  
Sbjct: 719 SMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSK 778

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ PD  T+ ++++  C  G  +   ++L+EM      P+V  YN L+ G  + G LK A
Sbjct: 779 GIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEA 838

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCK 427
             L D MLD G+VPDD+TY+IL+ G  K
Sbjct: 839 FTLHDEMLDRGLVPDDVTYDILINGKFK 866



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 197/404 (48%), Gaps = 68/404 (16%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +D G + +++ +N++M  LCK GK+ +A  + D    +G+    VS+N +I GHC+  
Sbjct: 460 EAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKG 518

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+D    + S M    ++P+V TYS LI+G  K+   + A  L  +M    + P D  F 
Sbjct: 519 NMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFN 578

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           T+I+G CK G++  A                             G++  A  +  EMC  
Sbjct: 579 TIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEF 638

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G++P+ +TYT L++GFCK   ++ AL  R EM ++G+ELD  A++ALI GFC+   +  A
Sbjct: 639 GVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESA 698

Query: 330 ERMLREMLKVGLKP-----------------------------------DDATYTMVIDC 354
           + +  E+L+VGL P                                   D  TYT +ID 
Sbjct: 699 QDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDG 758

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             K G       L  EM S G +P + T++ L+NGLC  GQL+NA  +L+ M    + P 
Sbjct: 759 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPS 818

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            + YN L+ G+ + GN ++   L  E   +GLV D   Y  L++
Sbjct: 819 VLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILIN 862



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 227/520 (43%), Gaps = 72/520 (13%)

Query: 7   LHAYSTMVHFLV-AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---HLPGLVL 62
           + AY  ++H L+ + + H  AR LL+  VS     S       ++         L   V 
Sbjct: 134 VDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVF 193

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + L+  Y+    +++AI CF  +              L+  ++R N+       Y +++ 
Sbjct: 194 NYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVL 253

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G     +  +V++    KEG++++A+  F E  +RG+   A +++ +I   CK  N + 
Sbjct: 254 RGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNL 313

Query: 183 GFRLKSVMEGSGMRPDVYTYSALI-----------------------------------N 207
           G  L   M+  G  P   T++++I                                    
Sbjct: 314 GLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMK 373

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM----------- 256
           G C +  LD A  L +++ E GL PN V ++ LI+G C +G I+ A ++           
Sbjct: 374 GYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPP 433

Query: 257 ------------------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
                             +EA K+ DE    G+  +  TY I++   CK G ++ A  + 
Sbjct: 434 SVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIFTYNIMMSWLCKGGKMDEACSLL 492

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+ +G+  + V++  +I G CR G +  A  +  +ML   LKP+  TY+++ID   K 
Sbjct: 493 DNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKK 552

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD++    L  +M S    P   T+N ++NGLCK GQ+  A   L   L+ G +P  +TY
Sbjct: 553 GDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTY 612

Query: 419 NILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVS 455
           N +++G  K GN +    +  E    G+  +   YTSL++
Sbjct: 613 NSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLIN 652



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 177/346 (51%), Gaps = 10/346 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G   ++ V   LM   C +G +  A  +F++  + GL    V+++ LI G C + 
Sbjct: 355 EMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSG 414

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+++   L + M+ +G+ P V+  ++L+ G  K    ++A  L  E  + G+  N   + 
Sbjct: 415 NIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYN 473

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            ++   CK G++D      EA  ++D M   G+ P+ ++Y  ++ G C++G+++ A  + 
Sbjct: 474 IMMSWLCKGGKMD------EACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 527

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M+ R ++ + V ++ LI G  + G   +A  +  +ML + + P D T+  +I+  CK 
Sbjct: 528 SDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKV 587

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G        LK    +G +P+  TYN++++G  K G + +A  +   M + GV P+ +TY
Sbjct: 588 GQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTY 647

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYR 461
             L+ G CK    +   K +    EKGL  D   Y++L+    K R
Sbjct: 648 TSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRR 693



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 121/269 (44%), Gaps = 64/269 (23%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L+ G+ PS   +N ++    KEG I  A  V+ E  + G+    V++ +LING CK+  +
Sbjct: 601 LEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRI 660

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF--- 237
           D   + +  M   G+  DV  YSALI+G CK   ++ A+ L  E+ E GL+PN +++   
Sbjct: 661 DLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSM 720

Query: 238 --------------------------------TTLIDGHCKNGRIDMAGDM--------- 256
                                           TTLIDG  K GR+  A D+         
Sbjct: 721 ISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGI 780

Query: 257 --------------------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
                               + ARKI++EM    + P  + Y  L+ G+ +EG+L+ A  
Sbjct: 781 VPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFT 840

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGK 325
           +  EM+ RG+  D+V +  LI+G  +G +
Sbjct: 841 LHDEMLDRGLVPDDVTYDILINGKFKGDR 869



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 5/181 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           ++ M S+  LF  +LE  G     +V ++++  + DL  ++ A+  ++ +     RIP  
Sbjct: 692 RRDMESAQDLFFELLEV-GLSPNRIVYNSMISGFRDLNNMEAALVWYKKMIND--RIPCD 748

Query: 96  --GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 LID +++          Y+E+L  G  P +  F+VL++ LC +G++++A+ + +
Sbjct: 749 LGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILE 808

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E  ++ +  + + +NTLI G+ +  NL E F L   M   G+ PD  TY  LING  K +
Sbjct: 809 EMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGD 868

Query: 214 R 214
           R
Sbjct: 869 R 869


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 184/337 (54%), Gaps = 6/337 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P V  +  L+H  C  GK + A+ +F+E    G+     + + LI+  C
Sbjct: 324 LFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLC 383

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E  +L  V+   G  PDV T + L+ GLC ++R+  A  L  +M + G  PN V
Sbjct: 384 KKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVV 443

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLES 293
              TL+ G C++G I +A ++   + ++ +    G+N  P+ I+Y+I++DG CK G  + 
Sbjct: 444 TCATLMKGLCQSGNIKIALELH--KNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDE 501

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++ KEM   G+  D +++T+LI GFCR GK  +A+ +  EM+ +G++PD  T++++ID
Sbjct: 502 ARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLID 561

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G       LL+ M   G +P   TY  L+ GLC + ++  A  L   M  LG +P
Sbjct: 562 MLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLP 621

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACY 450
           D +TY  L++G C+ GN +    L+  K ++SD   Y
Sbjct: 622 DVVTYGTLMKGLCQTGNIK--TALELHKKMLSDTGQY 656



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 176/333 (52%), Gaps = 18/333 (5%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P V     L+  LC + +I  A  +F +  K G     V+  TL+ G C++ N
Sbjct: 398 VIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGN 457

Query: 180 LDEGFRLKSVM------EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +     L   M       G   +P+  +YS +I+GLCK  R D+A  L  EM   G+ P+
Sbjct: 458 IKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPD 517

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + +T+LI G C++G+       K+A+ + +EM   G+ PD  T+++L+D  CKEG +  
Sbjct: 518 VISYTSLIHGFCRSGK------WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIE 571

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++ + MI+RG   + V +T L+ G C   ++ EA ++  +M K+G  PD  TY  ++ 
Sbjct: 572 ANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMK 631

Query: 354 CFCKNGDTKTGFRLLKEMRSD------GHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
             C+ G+ KT   L K+M SD         P V +Y+ +++GLCKHG+   A  L   M 
Sbjct: 632 GLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMK 691

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            LGV+P+ I+Y  L+ G C+ G  ED   L +E
Sbjct: 692 ALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNE 724



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 225/447 (50%), Gaps = 41/447 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLH--LIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           +Y+T++H         +A+ L +  L V  +   +++S+   +L  +G  +     + L+
Sbjct: 339 SYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEA---NKLL 395

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
            V +  G + D + C  L++            C+  R+ +          +L++   G  
Sbjct: 396 EVVIQRGCIPDVVTCTTLVKG----------LCMKHRISKAT------QLFLKMQKLGCM 439

Query: 127 PSVYVFNVLMHKLCKEGKIKDA----QMVFDEFGKRGLHA--TAVSFNTLINGHCKAKNL 180
           P+V     LM  LC+ G IK A    + +  +    G++    A+S++ +I+G CK    
Sbjct: 440 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 499

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DE   L   M+  G+ PDV +Y++LI+G C+  +  DA+ L +EM + G+ P+   F+ L
Sbjct: 500 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 559

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ID  CK G++       EA ++++ M   G  P+ +TYT L+ G C    +  A  +  +
Sbjct: 560 IDMLCKEGKV------IEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 613

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK------VGLKPDDATYTMVIDC 354
           M K G   D V +  L+ G C+ G +  A  + ++ML          KPD  +Y+++ID 
Sbjct: 614 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 673

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK+G       L KEM++ G +P V +Y +L++G C+ G+L++A  L + M+D GV  +
Sbjct: 674 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 733

Query: 415 DITYNILLEGHCKHGNPED--FDKLQS 439
            +TY++++ G CK G  +   F K+++
Sbjct: 734 AVTYSVMIHGFCKEGQIDKALFQKMEA 760



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 183/337 (54%), Gaps = 6/337 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P V  +  L+H  C+ GK + A+ +F+E    G+ +   + + LI+  C
Sbjct: 143 LFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILC 202

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E   L  VM   G   D+ TYS LI GLC ++R+ +A  L   M + G  P+ +
Sbjct: 203 KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAI 262

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLES 293
            + TL+ G C+ G I+ A  ++  ++++++    G+   P  I+Y+I++DG CK+   + 
Sbjct: 263 AYGTLMKGLCQTGNINTA--LQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDE 320

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++ KEM  +GI  D +++T LI GFC  GK  +A+ +  EML VG++PD  T +++ID
Sbjct: 321 ARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLID 380

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G      +LL+ +   G +P V T   L+ GLC   ++  A  L   M  LG +P
Sbjct: 381 MLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMP 440

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACY 450
           + +T   L++G C+ GN +    L+  K ++SD + Y
Sbjct: 441 NVVTCATLMKGLCQSGNIK--IALELHKNMLSDTSPY 475



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 191/420 (45%), Gaps = 91/420 (21%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G  P V    VL+   CKEGK+ +A  + +   +RG     V+++TLI G C    
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 180 LDEGFRLKSVMEGSGMRPD----------------------------------------- 198
           + E  +L   M+  G RPD                                         
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           + +YS +I+GLCK+ R D+A  L  EM  +G+ P+ + +T+LI G C++G+ +      +
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWE------K 174

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A+ + +EM   G+  D  T ++L+D  CKEG +  A ++ + MI+RG  LD V ++ LI 
Sbjct: 175 AKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIK 234

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR------------ 366
           G C   ++ EA R+   M K+G +PD   Y  ++   C+ G+  T  +            
Sbjct: 235 GLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRY 294

Query: 367 -----------------------------LLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
                                        L KEM++ G +P V +Y  L++G C  G+ +
Sbjct: 295 GIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWE 354

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            A  L + MLD+G+ PD  T ++L++  CK G   + +KL     ++G + D    T+LV
Sbjct: 355 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLV 414


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +  +L+ G   S    N L+H LC  GK+ +A  +  E  +RGL    +++N LI G C
Sbjct: 452 LWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFC 511

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               ++  FRL+  M   G++PD+YTY+ L+ GLC   +LDDA  L  E    GL  N  
Sbjct: 512 NEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIH 571

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  +++G+CK  RI+      +   + +E+ +  +  + I Y I++   C+ G++ +AL
Sbjct: 572 TYGIMMEGYCKANRIE------DVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAAL 625

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + + M  +GI  +   +++LI G C  G V +A+ ++ EM K G  P+   YT +I  +
Sbjct: 626 QLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGY 685

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G   T      EM S    P   TY  +++G CK G ++ AN LL  M + G+VPD 
Sbjct: 686 CKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDV 745

Query: 416 ITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +TYN+L  G CK  + ++  K+    + +GL  D   YT+LV
Sbjct: 746 VTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/404 (32%), Positives = 203/404 (50%), Gaps = 23/404 (5%)

Query: 62  LDALMIVYV----DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
            D L+ VY     +LGF   A+  F LL +       + C   +  +++ N        +
Sbjct: 151 FDLLIHVYSTQFRNLGF-SCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVF 209

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             ++  G  P V+ F  +++ LCK GK+++A  +F +  K G+    V++N +ING C+ 
Sbjct: 210 -RVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQN 268

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             LD  F LK  M   G++P++ TY ALINGL K N  D    +L EM   G  PN V+F
Sbjct: 269 GRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVF 328

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             LIDG+CK G I+       A KI D M +  + P  +T   L+ GFCK   +E A + 
Sbjct: 329 NNLIDGYCKMGNIE------GALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENA 382

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +E++  G+ +      +++   C+  +   A R  + ML    +P D   TM++   CK
Sbjct: 383 LEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCK 442

Query: 358 NGD----TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
           +G     T+  FRLL++    G   +  T NAL++GLC  G+L  A+ ++  ML+ G+  
Sbjct: 443 DGKHLEATELWFRLLEK----GSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPM 498

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           D ITYN L+ G C  G  E   +L+ E   +G+  D   Y  L+
Sbjct: 499 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLL 542



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 167/306 (54%), Gaps = 6/306 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+ G       +N L+   C EGK++    + +E  KRG+     ++N L+ G C   
Sbjct: 490 EMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVG 549

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD+  +L    + SG+  +++TY  ++ G CK NR++D E L +E+  + +  N +++ 
Sbjct: 550 KLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYN 609

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I  HC+NG +        A ++++ M + G+ P+  TY+ L+ G C  G +E A  + 
Sbjct: 610 IIIKAHCQNGNV------AAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 663

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM K G   + V +TALI G+C+ G++  AE    EM+   + P+  TYT++ID +CK 
Sbjct: 664 DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKL 723

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+ +    LL +M+  G +P V TYN L NG CK   + NA  + D M   G+  D+ITY
Sbjct: 724 GNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITY 783

Query: 419 NILLEG 424
             L+ G
Sbjct: 784 TTLVHG 789



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 179/339 (52%), Gaps = 9/339 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L   + PS  +  +L+  LCK+GK  +A  ++    ++G  A+ V+ N LI+G C A  
Sbjct: 421 MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGK 480

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L E  R+   M   G+  D  TY+ALI G C E +++    L  EM +RG+ P+   +  
Sbjct: 481 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 540

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+ G C  G++D      +A K+ DE   +GL  +  TY I+++G+CK   +E   ++  
Sbjct: 541 LLRGLCNVGKLD------DAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFN 594

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           E++ + +EL+++ +  +I   C+ G V  A ++L  M   G+ P+ ATY+ +I   C  G
Sbjct: 595 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG 654

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +    L+ EMR +G +P V  Y AL+ G CK GQ+  A      M+   + P+  TY 
Sbjct: 655 LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYT 714

Query: 420 ILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           ++++G+CK GN E  + L     E G+V D   Y  L +
Sbjct: 715 VMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTN 753



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 164/334 (49%), Gaps = 38/334 (11%)

Query: 19  AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           A K+ S A  L+H +     +  ++ +   +LE RG  +  +  +AL++ + + G ++  
Sbjct: 463 ASKVTSNA--LIHGLCGAGKLPEASRIVKEMLE-RGLPMDRITYNALILGFCNEGKVEG- 518

Query: 79  IQCFRL---LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
             CFRL   + K   +        L+  +         +  + E    G   +++ + ++
Sbjct: 519 --CFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIM 576

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           M   CK  +I+D + +F+E   + +   ++ +N +I  HC+  N+    +L   M+  G+
Sbjct: 577 MEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI 636

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-- 253
            P+  TYS+LI+G+C    ++DA+ L+ EM + G  PN V +T LI G+CK G++D A  
Sbjct: 637 LPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAES 696

Query: 254 ---------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
                                      G+M++A  ++ +M  +G+ PD +TY +L +GFC
Sbjct: 697 TWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFC 756

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           K  D+++A  +  +M   G+ +D + +T L+ G+
Sbjct: 757 KANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 790


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 177/339 (52%), Gaps = 10/339 (2%)

Query: 99  CLIDRMMRT--NLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           C ++ +M    +L  +T  F +   IL  GY P+    N L+  LC  G+IK A    D+
Sbjct: 99  CTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQ 158

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
              +G     VS+ TLING CK        RL   +EG  ++PDV  Y+ +I+ LCK   
Sbjct: 159 VVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKL 218

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           L DA  L  EM  +G++PN V +  L+ G C      + G +KEA  +++EM    +NPD
Sbjct: 219 LGDACDLYSEMIVKGISPNVVTYNALVYGFC------IMGHLKEAFSLLNEMKLKNINPD 272

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             T+  L+D   KEG +++A  +   M+K  I+ D V + +LI G+    KV  A+ +  
Sbjct: 273 VCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFY 332

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M + G+ P+  TYT +ID  CK         L +EM+    +P + TY +L++GLCK+ 
Sbjct: 333 SMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNH 392

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            L+ A  L   M + G+ PD  +Y ILL+  CK G  E+
Sbjct: 393 HLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLEN 431



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 195/379 (51%), Gaps = 7/379 (1%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           S+ A+IL+ RG H   + L+ L+      G +  A+     +    F++     R LI+ 
Sbjct: 119 SVLANILK-RGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLING 177

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           + +T           ++  +   P V ++N ++H LCK   + DA  ++ E   +G+   
Sbjct: 178 LCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPN 237

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V++N L+ G C   +L E F L + M+   + PDV T++ LI+ L KE ++  A+++L 
Sbjct: 238 VVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLA 297

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
            M +  + P+ V + +LIDG+    ++      K A+ +   M  +G+ P+  TYT ++D
Sbjct: 298 VMMKACIKPDVVTYNSLIDGYFFLNKV------KNAKYVFYSMAQSGVTPNVRTYTTMID 351

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G CKE  ++ A+ + +EM  + +  D V +T+LI G C+   +  A  + ++M + G++P
Sbjct: 352 GLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQP 411

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  +YT+++D  CK G  +      + +   G+   V+TYN ++NGLCK      A  L 
Sbjct: 412 DVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLK 471

Query: 404 DTMLDLGVVPDDITYNILL 422
             M   G +PD IT+  ++
Sbjct: 472 SKMEGKGCMPDAITFKTII 490



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 168/324 (51%), Gaps = 29/324 (8%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P VY + +L+  LCK G++++A+  F     +G H    ++N +ING CKA    
Sbjct: 406 EQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFG 465

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT---------- 231
           E   LKS MEG G  PD  T+  +I  L +++  D AE +L EM  RGL           
Sbjct: 466 EAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEA 525

Query: 232 -------------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
                        P+ V + TL+DG+       +  ++K A+ +   M   G+ P+   Y
Sbjct: 526 KIVLAVMTKACIKPDVVTYGTLMDGYF------LVNELKHAKYVFYSMAQMGVTPNVQCY 579

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           TI++DG CK+  ++ A+ + +EM  + +  + V +T+LI   C+   +  A  +L+EM +
Sbjct: 580 TIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKE 639

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G++PD  +YT+++D  CK+G  +    + + +   G+   V+ Y A++N LCK G    
Sbjct: 640 HGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDE 699

Query: 399 ANMLLDTMLDLGVVPDDITYNILL 422
           A  L   M D G +PD +T++I++
Sbjct: 700 ALDLQXKMEDKGCMPDAVTFDIII 723



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 194/403 (48%), Gaps = 39/403 (9%)

Query: 83  RLLRK---HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
           RLLRK   H  +        +I  + +  L       Y E++  G SP+V  +N L++  
Sbjct: 189 RLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGF 248

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           C  G +K+A  + +E   + ++    +FNTLI+   K   +     + +VM  + ++PDV
Sbjct: 249 CIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDV 308

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
            TY++LI+G    N++ +A+ + + M + G+TPN   +TT+IDG CK   +D      EA
Sbjct: 309 VTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVD------EA 362

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
             + +EM    + PD +TYT L+DG CK   LE A+ + K+M ++GI+ D  ++T L+  
Sbjct: 363 MSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDA 422

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C+GG++  A+   + +L  G   +  TY ++I+  CK         L  +M   G +P 
Sbjct: 423 LCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPD 482

Query: 380 VETYNALMNGL-----------------------CKHGQLKNANMLLDTMLDLGVVPDDI 416
             T+  ++  L                        +  +LK A ++L  M    + PD +
Sbjct: 483 AITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVV 542

Query: 417 TYNILLEGH-----CKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
           TY  L++G+      KH     +    ++ G+  +  CYT ++
Sbjct: 543 TYGTLMDGYFLVNELKHAKYVFYS--MAQMGVTPNVQCYTIMI 583



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 211/471 (44%), Gaps = 84/471 (17%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+T++H L  +K+                +G +  L++ ++  +G     +  +AL+  +
Sbjct: 206 YNTIIHSLCKNKL----------------LGDACDLYSEMI-VKGISPNVVTYNALVYGF 248

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
             +G L +A                     L++ M   N+                +P V
Sbjct: 249 CIMGHLKEAFS-------------------LLNEMKLKNI----------------NPDV 273

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             FN L+  L KEGK+K A++V     K  +    V++N+LI+G+     +     +   
Sbjct: 274 CTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYS 333

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  SG+ P+V TY+ +I+GLCKE  +D+A  L  EM  + + P+ V +T+LIDG CKN  
Sbjct: 334 MAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHH 393

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           ++       A  +  +M   G+ PD  +YTILLD  CK G LE+A +  + ++ +G  L+
Sbjct: 394 LE------RAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLN 447

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              +  +I+G C+     EA  +  +M   G  PD  T+  +I    +  +     ++L+
Sbjct: 448 VQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILR 507

Query: 370 EMRSDGHL-----------------------PAVETYNALMNGLCKHGQLKNANMLLDTM 406
           EM + G                         P V TY  LM+G     +LK+A  +  +M
Sbjct: 508 EMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSM 567

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             +GV P+   Y I+++G CK    ++   L  E   K +  +   YTSL+
Sbjct: 568 AQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLI 618



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 152/331 (45%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + FN ++  L           +F +F   G      + N L+N  C   ++   F +
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + +   G  P+  T + LI GLC    +  A     ++  +G   N V + TLI+G CK
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G+ K   +++ ++  + + PD + Y  ++   CK   L  A D+  EMI +GI
Sbjct: 181 ------TGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGI 234

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V + AL+ GFC  G + EA  +L EM    + PD  T+  +ID   K G  K    
Sbjct: 235 SPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKI 294

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L  M      P V TYN+L++G     ++KNA  +  +M   GV P+  TY  +++G C
Sbjct: 295 VLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLC 354

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           K    ++   L  E   K ++ D   YTSL+
Sbjct: 355 KEKMVDEAMSLFEEMKYKNMIPDIVTYTSLI 385



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 41/94 (43%)

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML +   P    +  ++     N    T   L K+  S+G  P + T N LMN  C    
Sbjct: 54  MLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTH 113

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +  A  +L  +L  G  P+ IT N L++G C  G
Sbjct: 114 ITFAFSVLANILKRGYHPNAITLNTLIKGLCFRG 147


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 181/344 (52%), Gaps = 13/344 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + FN L+   C+  ++  AQ +FD+   RG    AVS+  LI G C+   +DE 
Sbjct: 159 GWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEA 218

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   +E    +PD+YT++AL+ GLC   R ++   +L +M E G  P    +  L+D 
Sbjct: 219 LELFRELE----QPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDL 274

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+  + +      EA K+++EM  NGL P  +T T +++ +C+EG +  A+ + + M  
Sbjct: 275 WCREQKAE------EAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKL 328

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G E +   + A++ GFC  GKV +A  +L +M + G++PD  TY ++I   C +G  ++
Sbjct: 329 KGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIES 388

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            FRLL+ M  +G      TYN L++ LCK G++  A  L D +   G+ P+ +T+N ++ 
Sbjct: 389 AFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVIN 448

Query: 424 GHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           G CK G  +    F +     G   D   Y+  +    K +  R
Sbjct: 449 GLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSR 492



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 194/407 (47%), Gaps = 17/407 (4%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           RG     +   AL+  + + G +D+A++ FR L +      A   + L D          
Sbjct: 193 RGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGLCDARRGEE---- 248

Query: 113 TLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
             G Y+  ++ + G+ P+   +  L+   C+E K ++A+ + +E    GL   AV+   +
Sbjct: 249 --GLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAV 306

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +N +C+   +    R+   M+  G  P+V+TY+A++ G C   ++  A  LL +M E G+
Sbjct: 307 VNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGV 366

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V +  LI G C +G I+       A +++  M  NGL  D+ TY +L+D  CK G 
Sbjct: 367 EPDVVTYNLLIRGQCIDGHIE------SAFRLLRLMEGNGLAADQYTYNVLIDALCKTGK 420

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A  +   +  RGI  ++V F  +I+G C+GGK   A   L +M+  G  PD  TY+ 
Sbjct: 421 VDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSP 480

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            I+  CK   ++ G   + EM      P+   Y  +++ L K      A  +   M+ LG
Sbjct: 481 FIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLG 540

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLV 454
             PD +TY   +  +C  G   + + +  E    G++ D   Y +L+
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLI 587



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 13/295 (4%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           T  ++N LI   C+  +L    R  S+M  SG RPD +T+++LI G C+  +LD A+ L 
Sbjct: 128 TGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLF 187

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M  RG + + V +  LI+G C+ GR+D      EA ++  E+      PD  T+  L+
Sbjct: 188 DKMPLRGFSQDAVSYAALIEGFCETGRVD------EALELFREL----EQPDMYTHAALV 237

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G C     E  L + ++M + G      A+ AL+  +CR  K  EAE+ML EM   GL 
Sbjct: 238 KGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLV 297

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P   T T V++ +C+ G      R+ + M+  G  P V TYNA++ G C  G++  A  L
Sbjct: 298 PCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMAL 357

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           LD M + GV PD +TYN+L+ G C  G+ E      +L    GL +D   Y  L+
Sbjct: 358 LDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLI 412



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 151/297 (50%), Gaps = 6/297 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V+ +N ++   C  GK+  A  + D+  + G+    V++N LI G C   +++  
Sbjct: 330 GCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESA 389

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +MEG+G+  D YTY+ LI+ LCK  ++D+A  L   +  RG+ PN V F T+I+G
Sbjct: 390 FRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVING 449

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G+ D+A         +++M + G  PD  TY+  ++  CK       L    EM++
Sbjct: 450 LCKGGKFDVAC------TFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQ 503

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + ++   V +T +I    +      A R+  +M+ +G  PD  TYT  +  +C  G    
Sbjct: 504 KDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHE 563

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
              ++ EM+  G +     YN L++G    G+  +A  +L  M  +  +P+  T+ I
Sbjct: 564 AENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFI 620



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 172/411 (41%), Gaps = 22/411 (5%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G   SA     ++E  G        + L+      G +D+A   F  L     R  +   
Sbjct: 384 GHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTF 443

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             +I+ + +     V   F  +++  G +P  Y ++  +  LCK    ++     DE  +
Sbjct: 444 NTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQ 503

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           + +  + V++  +I+   K +N     R+   M   G  PDV TY+  +   C E RL +
Sbjct: 504 KDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHE 563

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           AE ++ EM + G+  + + + TLIDGH   G+ D       A  I+  M      P+  T
Sbjct: 564 AENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTD------HAVTILKHMTGVASMPNHFT 617

Query: 278 YTILL----------------DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           + ILL                    K  +L    ++ + M K  +     A+ A++ GF 
Sbjct: 618 FFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFS 677

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
              ++ E   ++  M +  L  ++  YT +++CFCK       + LL  M   G LP + 
Sbjct: 678 EERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLI 737

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +Y  L++G    GQ   A  +   +       D+I + I+++G  + G+P+
Sbjct: 738 SYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPD 788



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 154/415 (37%), Gaps = 115/415 (27%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +   Y +NVL+  LCK GK+ +A  +FD    RG+   +V+FNT+ING CK    D  
Sbjct: 400 GLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVA 459

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M  +G  PD YTYS  I  LCK     +    + EM ++ + P+ V +T +ID 
Sbjct: 460 CTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDR 519

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
             K     +A                             G + EA  +V EM   G+  D
Sbjct: 520 LFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVD 579

Query: 275 KITYTILLDGFCKEGDLESALDIRKEM--------------------------------- 301
            + Y  L+DG    G  + A+ I K M                                 
Sbjct: 580 AMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTT 639

Query: 302 -IKRGIELDNV-----------------AFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            + + IEL +V                 A+ A++ GF    ++ E   ++  M +  L  
Sbjct: 640 SVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPL 699

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN--- 400
           ++  YT +++CFCK       + LL  M   G LP + +Y  L++G    GQ   A    
Sbjct: 700 NEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIF 759

Query: 401 ----------------MLLDTMLDLG----------------VVPDDITYNILLE 423
                           +++D ++  G                  P D TY +L E
Sbjct: 760 RGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTE 814


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 177/333 (53%), Gaps = 9/333 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y+     +N L+  L K G+       +++    G      ++  L+   C+A+  +E  
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +   M   G  P+V++YS LI GLC+  ++D+A  LL+EM + G  PN V + +L+ G 
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G+      +KEA  +   M   G  PD + Y +L+DGF K+GD+  A  + +EM+++
Sbjct: 133 CKMGK------LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G       + +L+SGF R G+    + + ++ML+ G  P+  T+  ++D FCK GD    
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            RL  EMRS G  P V +YN LM G+C  G+   A  LL  M+  GV PD ++YNIL++G
Sbjct: 247 HRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDG 306

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + K G  +   KL  E    GL  D   Y++++
Sbjct: 307 YSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 165/315 (52%), Gaps = 6/315 (1%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G Y ++L  G  P+ Y +  L+  LC+  + ++A+ VF     +G      S++ LI G 
Sbjct: 38  GTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGL 97

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C+ + +DE   L + M   G +P+V TY +L++GLCK  +L +A  L   M  RG  P+ 
Sbjct: 98  CRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V++  LIDG  K G      DM EA ++ +EM   G  P   TY  LL GF ++G+    
Sbjct: 158 VVYNVLIDGFSKKG------DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRV 211

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + K+M+++G   +   F  L+ GFC+ G +VEA R+  EM  +G  PD  +Y  ++  
Sbjct: 212 QSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRG 271

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C  G      RLL+EM   G  P + +YN L++G  K G L +A  L   +   G+ PD
Sbjct: 272 MCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 415 DITYNILLEGHCKHG 429
             +Y+ +++  C+ G
Sbjct: 332 AFSYSTIIDCLCRAG 346



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 172/332 (51%), Gaps = 11/332 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G+ P+V  +  L+  LCK GK+K+A  +F     RG     V +N LI+G  K  
Sbjct: 112 EMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++ E +RL   M   G  P V+TY++L++G  ++      + L  +M  +G  PN   F 
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG CK       GDM EA ++  EM + G  PD ++Y  L+ G C +G    A  + 
Sbjct: 232 NLLDGFCK------MGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLL 285

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EMI+ G+  D V++  LI G+ + G +  A ++  E+ K GL+PD  +Y+ +IDC C+ 
Sbjct: 286 REMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRA 345

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G     F + K+M ++G  P       L+ GLC+  +L  +  L   M+    VP    Y
Sbjct: 346 GKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEY 405

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           N+L+   CK    +D    F +L +E+G   D
Sbjct: 406 NLLMYKLCKAKRSDDVCEIFHEL-TERGFSPD 436



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 163/345 (47%), Gaps = 21/345 (6%)

Query: 54  GTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMM 105
           G H P +V   +L+     +G L +A+  F        R+  RGC         LID   
Sbjct: 116 GGHQPNVVTYGSLLSGLCKMGKLKEAVDLFS-------RMVYRGCPPDGVVYNVLIDGFS 168

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           +          + E+L+ G  P+V+ +N L+    ++G+    Q +F +  ++G      
Sbjct: 169 KKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIF 228

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +FN L++G CK  ++ E  RL   M   G  PDV +Y+ L+ G+C + +  +A+ LL EM
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREM 288

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G+ P+ V +  LIDG+ K+G +D       A K+  E+  +GL PD  +Y+ ++D  
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALD------HAIKLFYEIPKSGLEPDAFSYSTIIDCL 342

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C+ G + +A  + K+MI  G   D      L+ G CRG ++ E+  + + M+K    P  
Sbjct: 343 CRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLI 402

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             Y +++   CK   +     +  E+   G  P VE    ++  L
Sbjct: 403 PEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 6/249 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++L  G  P+++ FN L+   CK G + +A  +F E    G     VS+NTL+ G C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC 273

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                 E  RL   M  SG+ PD+ +Y+ LI+G  K   LD A  L +E+ + GL P+  
Sbjct: 274 SKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            ++T+ID  C+      AG +  A  +  +M  NG  PD      L+ G C+   L  + 
Sbjct: 334 SYSTIIDCLCR------AGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESC 387

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ + M+K         +  L+   C+  +  +   +  E+ + G  PD     ++++  
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447

Query: 356 CKNGDTKTG 364
            ++ D +  
Sbjct: 448 RRSDDKEAA 456


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 182/344 (52%), Gaps = 13/344 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +L+ L+ G+       N L+H LC+ GK+++   +  E   RG     VS+NTLI+G C
Sbjct: 484 LWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCC 543

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
             K LDE F     M   G++PD YTYS LI GL   N++++A     +    G+ P+  
Sbjct: 544 GNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVY 603

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            ++ +IDG CK  R +      E +K+ DEM +N L P+ + Y  L+  +C+ G L  AL
Sbjct: 604 TYSVMIDGCCKAERTE------EGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMAL 657

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++R++M  +GI  ++  +T+LI G     +V EA+ +L EM   GL+P+   YT +ID +
Sbjct: 658 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGY 717

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K G       LL+EM S    P   TY  ++ G  + G +  A+ LL  M + G+VPD 
Sbjct: 718 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDS 777

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           ITY   + G+ K G       LQ+ KG  SD   Y +++   +K
Sbjct: 778 ITYKEFIYGYLKQGGV-----LQAFKG--SDEENYAAIIEGWNK 814



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 171/334 (51%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY+F   ++  CK GK+++A  +F +  + G+    V++NT+I+G   +   DE 
Sbjct: 247 GVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEA 306

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K  M   G+ P + TYS L+ GL K  R+ DA  +L EM E+G  PN +++  LID 
Sbjct: 307 FMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDS 366

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +      AG + +A +I D M + GL+    TY  L+ G+CK G  + A  + KEM+ 
Sbjct: 367 LIE------AGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLS 420

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G  ++  +FT++I   C       A R + EML   + P     T +I   CK+G    
Sbjct: 421 IGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSK 480

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +  + G L   +T NAL++GLC+ G+L+    +   +L  G V D ++YN L+ 
Sbjct: 481 AVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLIS 540

Query: 424 GHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           G C +   ++   F     +KGL  D   Y+ L+
Sbjct: 541 GCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILI 574



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 167/335 (49%), Gaps = 10/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PS    N+L+  L +  + +     F    K G+      F T IN  CK   ++E 
Sbjct: 213 GMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCK-GVSPDVYLFTTAINAFCKGGKVEEA 271

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S ME +G+ P+V TY+ +I+GL    R D+A +   +M ERG+ P  + ++ L+ G
Sbjct: 272 IELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKG 331

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K  RI   GD   A  ++ EM   G  P+ I Y  L+D   + G L  A++I+  M+ 
Sbjct: 332 LTKAKRI---GD---AYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVS 385

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+ L +  +  LI G+C+ G+   AER+L+EML +G   +  ++T VI   C +    +
Sbjct: 386 KGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDS 445

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R + EM      P       L++GLCKHG+   A  L    L+ G + D  T N LL 
Sbjct: 446 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLH 505

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G C+ G  E+  ++Q E   +G V D   Y +L+S
Sbjct: 506 GLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLIS 540


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 186/393 (47%), Gaps = 65/393 (16%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++ R  +  L  V   F+  +L YG  P  Y +N+L+H L   G +++A  + ++  K+G
Sbjct: 191 IMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQG 250

Query: 160 LHATAVSF------------------------------------NTLINGHCKAKNLDEG 183
           L    V++                                      LI GHC+  N++E 
Sbjct: 251 LQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEA 310

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL+  +  SG + +V  YS L++ LCK  ++D+A  LL+EM    L P+ V ++ LI G
Sbjct: 311 LRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHG 370

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            CK G++  A                             G + +AR   D +  + L PD
Sbjct: 371 LCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPD 430

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
              Y I++DG+ K GD+E A+ + K +  + I    V F +LI GFC+  KVVEA R+L 
Sbjct: 431 VTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLE 490

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            +   GL+P   TYT +++ +C+ G+      LL EM      P V TY  ++ GLCK  
Sbjct: 491 SIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQR 550

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           +L+ +  LL+ M   G+ PD ITYN +++  CK
Sbjct: 551 KLEESVQLLEDMRAKGLAPDQITYNTIIQCFCK 583



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 227/447 (50%), Gaps = 17/447 (3%)

Query: 17  LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV-YVDLGFL 75
           +V +K+ ++   LL L      M  +  +   +L   G   P LV   ++I  +  +G +
Sbjct: 255 MVTYKIVAKGFHLLGL------MSGAREIIQKMLTDEGLK-PDLVTYTVLICGHCQMGNI 307

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
           ++A++  R L    F++       L+  + +       L    E+      P +  +++L
Sbjct: 308 EEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSIL 367

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           +H LCK+GK++ A  ++ E     +   + + + ++ G C+   L +       +  S +
Sbjct: 368 IHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNL 427

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           RPDV  Y+ +I+G  K   +++A  L   + ++ +TP+ V F +LI G CKN ++     
Sbjct: 428 RPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKV----- 482

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
             EAR++++ +  +GL P  +TYT L++ +C+EG++    ++  EM  + IE   V +T 
Sbjct: 483 -VEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTV 541

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I G C+  K+ E+ ++L +M   GL PD  TY  +I CFCK  D +  F LL +M    
Sbjct: 542 VIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHN 601

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             P   TYN L++GLC++G +++A+ +L ++ D  +    + Y  +++ HC  G+ +   
Sbjct: 602 LEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAV 661

Query: 436 KL---QSEKGLVSDYACYTSLVSKSSK 459
           K+     EKG       Y++++++  K
Sbjct: 662 KVFHQMVEKGFEVSIKDYSAVINRLCK 688



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           LVLD ++   V    + DA+     +++   R   +    L+  +  T+   +    Y +
Sbjct: 84  LVLDQMLQEEVASRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTD---IMWDVYND 140

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I D G   S    ++++  LC + + +DA +   +   +    + VSFNT+++ +CK   
Sbjct: 141 IKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGL 200

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            D       +M   G+ PD Y+Y+ LI+GL     +++A  L ++M ++GL P+ V +  
Sbjct: 201 ADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKI 260

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIR 298
           +  G        + G M  AR+I+ +M T+ GL PD +TYT+L+ G C+ G++E AL +R
Sbjct: 261 VAKG------FHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLR 314

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++++  G +L+ + ++ L+S  C+ G+V EA ++L EM    L+PD  TY+++I   CK 
Sbjct: 315 RDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQ 374

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +   +L KEM  +   P    ++ ++ GLC+ G L +A M  D+++   + PD   Y
Sbjct: 375 GKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLY 434

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYRQ 462
           NI+++G+ K G+ E+  +L     +K +      + SL+    K R+
Sbjct: 435 NIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRK 481



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 155/304 (50%), Gaps = 6/304 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V ++N+++    K G +++A  ++     + +  + V+FN+LI G CK + + E  RL
Sbjct: 429 PDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRL 488

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              ++  G+ P   TY+ L+N  C+E  ++    LL EM  + + P  V +T +I G CK
Sbjct: 489 LESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCK 548

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             +++      E+ +++++M   GL PD+ITY  ++  FCK  D+  A ++  +M+   +
Sbjct: 549 QRKLE------ESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNL 602

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E     +  LI G CR G V +A+R+L  +    +      YT +I   C  GD +   +
Sbjct: 603 EPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVK 662

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +  +M   G   +++ Y+A++N LCK   +  A      ML  GV PD   + ++L    
Sbjct: 663 VFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFH 722

Query: 427 KHGN 430
           + G+
Sbjct: 723 RAGH 726



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 41/340 (12%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L DA   F  L     R        +ID  ++       +  Y  + D   +PS+  F
Sbjct: 410 GMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTF 469

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L++  CK  K+ +A+ + +     GL  +AV++ TL+N +C+  N+++   L   M  
Sbjct: 470 NSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNL 529

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
             + P V TY+ +I GLCK+ +L+++  LL +M  +GL P+ + + T+I   CK      
Sbjct: 530 KDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCK------ 583

Query: 253 AGDMKEARKIVDEMCTNGLNPD-----------------------------------KIT 277
           A DM++A +++D+M  + L P                                    K+ 
Sbjct: 584 AKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVA 643

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT ++   C +GD + A+ +  +M+++G E+    ++A+I+  C+   + EA+     ML
Sbjct: 644 YTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIML 703

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
             G+ PD   + M+++ F + G   + F LL  M   G L
Sbjct: 704 SDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLL 743


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/356 (32%), Positives = 183/356 (51%), Gaps = 14/356 (3%)

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           DAI+ F  +     +   +    + D ++  N     +GFY E+ + G  P+V   N+L+
Sbjct: 103 DAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILI 162

Query: 137 HKLCK-EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
             LCK E  ++ A  +F E   RG    + ++ TLING CK   + +   L   ME  G+
Sbjct: 163 KALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGL 222

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            P V +Y++LI+GLC+ N LD+A  LL EM   G+ PN   +++L+DG CK+G    A +
Sbjct: 223 SPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAME 282

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           + E       M    L P+ +TY+ L++G CKEG    A++I   M  +G++ D   +  
Sbjct: 283 LLEV------MVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGR 336

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYT-------MVIDCFCKNGDTKTGFRLL 368
           +ISG C      EA   + EM   G+ P+ A++T       MV+   C N D    F+L 
Sbjct: 337 IISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLY 396

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             MR+ G    + T++ L+   CK G L  A  +L+ M+  G +PD+  +N+L+ G
Sbjct: 397 LSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCG 452



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 174/333 (52%), Gaps = 14/333 (4%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R + P   +  + ++ D+   P+   +  +   L +E  +K A   + E  ++G+  T V
Sbjct: 97  RVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVV 156

Query: 166 SFNTLINGHCK-AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           S N LI   CK  + ++  FRL   M   G +PD YTY  LINGLCK  ++  A+ LL E
Sbjct: 157 SLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDE 216

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M E+GL+P+ V +T+LI G C++  +D      EA ++++EM  NG+ P+  TY+ L+DG
Sbjct: 217 MEEKGLSPSVVSYTSLIHGLCQSNNLD------EAIELLEEMIINGIEPNVFTYSSLMDG 270

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK G    A+++ + M++R +  + V ++ LI+G C+ GK  EA  +L  M   GLKPD
Sbjct: 271 LCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPD 330

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-------VETYNALMNGLCKHGQLK 397
              Y  +I   C   + +     + EM   G  P        V+ +N ++ GLC +    
Sbjct: 331 AGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPT 390

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            A  L  +M   G+  +  T++ L++  CK G+
Sbjct: 391 RAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGD 423



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 175/372 (47%), Gaps = 12/372 (3%)

Query: 87  KHYFRIPARGCRCLIDRMMRT----NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
           K  F+ P +    L++++++     N   V      E    G+      F  ++H+L   
Sbjct: 4   KTLFKWPKQITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSV 63

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
            + + A+ + +   +     T   F T+  G+ +     +  R+   ME   ++P   +Y
Sbjct: 64  NQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSY 123

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
             + + L +EN +  A     EM E+G+ P  V    LI   CKN        ++ A ++
Sbjct: 124 LTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEET-----VESAFRL 178

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
             EM   G  PD  TY  L++G CK G +  A ++  EM ++G+    V++T+LI G C+
Sbjct: 179 FREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQ 238

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
              + EA  +L EM+  G++P+  TY+ ++D  CK+G +     LL+ M     LP + T
Sbjct: 239 SNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVT 298

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK- 441
           Y+ L+NGLCK G+ + A  +LD M   G+ PD   Y  ++ G C   N ++      E  
Sbjct: 299 YSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMA 358

Query: 442 --GLVSDYACYT 451
             G+  + A +T
Sbjct: 359 LGGISPNRASWT 370



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 149/293 (50%), Gaps = 14/293 (4%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           DA  VF +     +  T  S+ T+ +   +  ++         M   G+ P V + + LI
Sbjct: 103 DAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILI 162

Query: 207 NGLCK-ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
             LCK E  ++ A  L  EM  RG  P+   + TLI+G CK G+I       +A++++DE
Sbjct: 163 KALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKIS------QAKELLDE 216

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GL+P  ++YT L+ G C+  +L+ A+++ +EMI  GIE +   +++L+ G C+ G 
Sbjct: 217 MEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGH 276

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
             +A  +L  M++  L P+  TY+ +I+  CK G  +    +L  MR  G  P    Y  
Sbjct: 277 SSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGR 336

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY-------NILLEGHCKHGNP 431
           +++GLC     + A   +D M   G+ P+  ++       N++++G C + +P
Sbjct: 337 IISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDP 389



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 13/227 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V+ ++ LM  LCK G    A  + +   +R L    V+++TLING CK  
Sbjct: 251 EMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEG 310

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              E   +   M   G++PD   Y  +I+GLC      +A   + EM   G++PN   +T
Sbjct: 311 KHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWT 370

Query: 239 -------TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
                   ++ G C N       D   A ++   M T G++ +  T+  L+  FCK GDL
Sbjct: 371 FHVKMHNMVVQGLCNN------VDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDL 424

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             A  I +EMI  G   D   +  L+ G     KV E   +L   LK
Sbjct: 425 NKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVAELK 471


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 211/456 (46%), Gaps = 67/456 (14%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN---LPTVT- 113
           P  V DAL   Y        +   F LL +HY R        L+ +MM T    LP V  
Sbjct: 137 PSEVFDALFSCYEKCKLSSSSS--FDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRT 194

Query: 114 -------------LGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
                         G  +E+ D     G  P VY++  ++  LC+   +  A+ +  +  
Sbjct: 195 LSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQME 254

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----- 211
             G     V +N LI+G CK + + E   +K  + G  ++PDV TY  L+ GLCK     
Sbjct: 255 ATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFE 314

Query: 212 ------------------------------ENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
                                           ++++A  L+  + E G++PN  ++  LI
Sbjct: 315 VGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALI 374

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           D  CK    D      EA  + D M   GL P+ +TY+IL+D FC+ G L++AL    EM
Sbjct: 375 DSLCKGRNFD------EAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEM 428

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           I  G++     + +LI+G C+ G +  AE ++ EM+   L+P   TYT ++  +C  G  
Sbjct: 429 IDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKI 488

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               RL  EM   G +P++ T+  L++GL + G +++A  L   M +  V P+ +TYN++
Sbjct: 489 NKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVM 548

Query: 422 LEGHCKHGN-PEDFDKLQS--EKGLVSDYACYTSLV 454
           +EG+C+ GN  + F+ L    EKG+V D   Y  L+
Sbjct: 549 IEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLI 584



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 202/437 (46%), Gaps = 102/437 (23%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + ++G SP+++V+N L+  LCK     +A+++FD  GK GL    V+++ LI+  C+   
Sbjct: 358 VAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGK 417

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD        M   G++P VY Y++LING CK   +  AE L+ EM  + L P  V +T+
Sbjct: 418 LDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTS 477

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           L+ G+C  G+I+ A                             G +++A K+  EM    
Sbjct: 478 LMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWN 537

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI------------------------ 306
           + P+++TY ++++G+C+EG++  A +   EMI++GI                        
Sbjct: 538 VKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAK 597

Query: 307 -----------ELDNVAFTALISGFCRGGKVVEAER------------------------ 331
                      EL+ + +T L+ GFCR GK+ EA                          
Sbjct: 598 VFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGS 657

Query: 332 -----------MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
                      +L+EM   GLKPDD  YT +ID   K GD K  F +   M ++G +P  
Sbjct: 658 LKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNE 717

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH-GNPEDFDKLQS 439
            TY A++NGLCK G +  A +L   M     VP+ +TY   L+   K  G+ +   +L +
Sbjct: 718 VTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHN 777

Query: 440 E--KGLVSDYACYTSLV 454
              KGL+++ A Y  L+
Sbjct: 778 AILKGLLANTATYNMLI 794



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 178/349 (51%), Gaps = 9/349 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L   +SPS    + L+  L K GK+++A  +     + G+      +N LI+  CK +
Sbjct: 322 EMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGR 381

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N DE   L   M   G+ P+  TYS LI+  C+  +LD A   L EM + GL P+   + 
Sbjct: 382 NFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYN 441

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LI+GHCK       GD+  A  ++ EM    L P  +TYT L+ G+C +G +  AL + 
Sbjct: 442 SLINGHCK------FGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  +GI      FT L+SG  R G + +A ++  EM +  +KP+  TY ++I+ +C+ 
Sbjct: 496 HEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEE 555

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+    F  L EM   G +P   +Y  L++GLC  GQ   A + +D +       ++I Y
Sbjct: 556 GNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGLVS---DYACYTSLVSKSSKYRQKR 464
             LL G C+ G  E+   +  + GL     D  CY  L+  S K++ ++
Sbjct: 616 TGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRK 664



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 186/417 (44%), Gaps = 67/417 (16%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y E+   G  PS+Y F  L+  L + G I+DA  +F E  +  +    V++N +I 
Sbjct: 491 ALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIE 550

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C+  N+ + F   + M   G+ PD Y+Y  LI+GLC   +  +A++ +  + +     
Sbjct: 551 GYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCEL 610

Query: 233 NDVIFTTLIDGHCKNGRIDMA------------------------GDMKEA-RKI----V 263
           N++ +T L+ G C+ G+++ A                        G +K   RK+    +
Sbjct: 611 NEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLL 670

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM   GL PD + YT ++D   K GD + A  I   MI  G   + V +TA+I+G C+ 
Sbjct: 671 KEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKA 730

Query: 324 GKVVEAERMLREM-----------------------------------LKVGLKPDDATY 348
           G V EAE +  +M                                   +  GL  + ATY
Sbjct: 731 GFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATY 790

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            M+I  FC+ G  +    L+  M  DG  P   TY  +++ LC+   +K A  L ++M +
Sbjct: 791 NMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTE 850

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
            G+ PD + YN L+ G C  G      +L++E   +GL  +     + +S  S  + 
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTISNDSSSKS 907



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 150/298 (50%), Gaps = 10/298 (3%)

Query: 167 FNTLINGHCKAKN-LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           F+ LI  + +++  LD     K +M    + P+V T SAL++GL K      A  L  +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDM 218

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G+ P+  I+T +I   C+        D+  A++++ +M   G + + + Y +L+DG 
Sbjct: 219 INVGIRPDVYIYTGVIRSLCE------LKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGL 272

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK+  +  A+ I+K++  + ++ D V +  L+ G C+  +      M+ EML++   P +
Sbjct: 273 CKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSE 332

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
           A  + +++   K G  +    L+K +   G  P +  YNAL++ LCK      A +L D 
Sbjct: 333 AAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDR 392

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSKY 460
           M  +G+ P+D+TY+IL++  C+ G  +    F     + GL      Y SL++   K+
Sbjct: 393 MGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKF 450



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 124/254 (48%), Gaps = 6/254 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID  ++     V LG   E+ D G  P   ++  ++    K G  K+A  ++D     G
Sbjct: 653 LIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEG 712

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  +ING CKA  ++E   L S M      P+  TY   ++ L K        
Sbjct: 713 CVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKA 772

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           + LH    +GL  N   +  LI G C+ GR      M+EA +++  M  +G++PD ITYT
Sbjct: 773 VELHNAILKGLLANTATYNMLIRGFCRQGR------MEEASELITRMIGDGVSPDCITYT 826

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++   C+  D++ A+++   M ++GI  D VA+  LI G C  G++ +A  +  EML+ 
Sbjct: 827 TMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886

Query: 340 GLKPDDATYTMVID 353
           GLKP+  T    I 
Sbjct: 887 GLKPNTETSETTIS 900


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 174/316 (55%), Gaps = 7/316 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P VY + V++  LC+ G+I  A ++  E  + G+  T V++N L++  C++  ++E F+
Sbjct: 213 APDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQ 272

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           LK  M    +RP + T+  LINGL +  R  + + +L EM   G+TPN+VI+  LI  HC
Sbjct: 273 LKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHC 332

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G         EA ++ DEM + G+    +TY ++    CKEG++E A  I  EM+  G
Sbjct: 333 REGHCS------EALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAG 386

Query: 306 IELDNVAFTALISGFCRG-GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           + +    F ++++   RG G++    R++REM+   LKP+DA  T  I   CK G  +  
Sbjct: 387 MTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEA 446

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +   +   G    + T NAL++GLC+   +K A  +L  M+D GV  D ITYNI+++ 
Sbjct: 447 AEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQF 506

Query: 425 HCKHGNPEDFDKLQSE 440
            CK    E+  +L+ +
Sbjct: 507 CCKASKMEEAIQLRDD 522



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 171/352 (48%), Gaps = 30/352 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+  +G +P+  ++N L+   C+EG   +A  +FDE   +G+  T V++N +    CK  
Sbjct: 311 EMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEG 370

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALING-LCKENRLDDAELLLHEMCERGLTPNDVIF 237
            ++   ++   M  +GM      +++++   L    RLD    L+ EM  R L PND + 
Sbjct: 371 EMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVM 430

Query: 238 TTLIDGHCKNGRIDMAGD-----------------------------MKEARKIVDEMCT 268
           T  I   CK G+ + A +                             MKEA K++  M  
Sbjct: 431 TACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVD 490

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +G+  D+ITY I++   CK   +E A+ +R +MIKRG + D   F   +  +C  GKV +
Sbjct: 491 SGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVED 550

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
              +L +M   GLKPD  TY  +ID +CK  D     + L E+  +G  P    YNAL+ 
Sbjct: 551 ILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIG 610

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           G  ++G + +A  +LDTM   G+ P  ITYN L+   C  G  E+  ++ ++
Sbjct: 611 GYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQ 662



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 155/312 (49%), Gaps = 6/312 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +  +L  G   ++   N L+H LC+   +K+A  V       G+    +++N +I   C
Sbjct: 449 IWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCC 508

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  ++E  +L+  M   G +PD++T++  +   C   +++D   LL +M   GL P+ V
Sbjct: 509 KASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIV 568

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T+IDG+CK      A D+ +A K + E+  NGL P+ + Y  L+ G+ + G +  A+
Sbjct: 569 TYGTIIDGYCK------AKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAI 622

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   M   GI+   + + +L+   C  G V EA+ +  + +   ++     YT++I  F
Sbjct: 623 GVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGF 682

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G         KEM      P   TY  LM   CK G  + A  L D M+  G+VPD 
Sbjct: 683 CKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDT 742

Query: 416 ITYNILLEGHCK 427
           ++YN L+ G C+
Sbjct: 743 VSYNTLISGCCE 754



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 172/348 (49%), Gaps = 11/348 (3%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V L    E++     P+  V    + +LCK GK ++A  ++     +GL     + N LI
Sbjct: 410 VVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALI 469

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G C+  N+ E  ++   M  SG+  D  TY+ +I   CK +++++A  L  +M +RG  
Sbjct: 470 HGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFK 529

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   F T +  +C  G+++      +   ++D+M + GL PD +TY  ++DG+CK  D+
Sbjct: 530 PDLFTFNTFLRAYCNLGKVE------DILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDV 583

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A     E+IK G+  + V + ALI G+ R G + +A  +L  M   G++P   TY  +
Sbjct: 584 HKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSL 643

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +   C  G  +    +  +         V  Y  ++ G CK G++  A M    M    +
Sbjct: 644 MYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDI 703

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
            P+ +TY  L+  +CK GN E+    FD++ S  G+V D   Y +L+S
Sbjct: 704 RPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVS-SGIVPDTVSYNTLIS 750



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 7/235 (2%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDGHCKNGRIDM 252
           G  P + T + L+  L    +LD A  +  EM +   + P+   +T +I   C+ G ID 
Sbjct: 175 GASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDA 234

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A  M      + E+  +G+ P  +TY +L+D  C+ G +E A  ++  M++  +    V 
Sbjct: 235 AFVM------LAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVT 288

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  LI+G  RG +  E + +L+EM   G+ P++  Y  +I   C+ G      RL  EM 
Sbjct: 289 FGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMV 348

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           S G    V TYN +   LCK G++++A  +LD ML  G+      +N ++  H +
Sbjct: 349 SKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLR 403



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 6/186 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           + +E++  G  P+  ++N L+    + G I DA  V D     G+  T +++N+L+   C
Sbjct: 589 YLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMC 648

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            A  ++E   + +      +   V  Y+ +I G CK  ++D+A +   EM  R + PN +
Sbjct: 649 HAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKM 708

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +TTL+  +CK       G+ +EA K+ DEM ++G+ PD ++Y  L+ G C+   L+  +
Sbjct: 709 TYTTLMYAYCK------CGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIV 762

Query: 296 DIRKEM 301
           +   EM
Sbjct: 763 ESPAEM 768


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 187/364 (51%), Gaps = 33/364 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G S  +     +M  L K GK K+A+ VF+   K  L    V+++ L++G+CK   ++  
Sbjct: 421 GISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELA 480

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   ME   + P+V T+S++ING  K+  L  A  +L EM +R + PN +++  LIDG
Sbjct: 481 ELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDG 540

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           + K G  D+A                             G M EAR ++ +M + G++PD
Sbjct: 541 YFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD 600

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  L+DG+ KEG+  +AL I +EM ++ I  D VA+ ALI G  R GK  +   +  
Sbjct: 601 IVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGK-YDPRYVCS 659

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M+++GL PD  TY  +I+ +C  G T+    +L EM+S G +P   TYN L+ GLCK G
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            ++ A   LD ML +  VP  IT+  L++ + +    +   ++  +    GL      Y 
Sbjct: 720 AVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYN 779

Query: 452 SLVS 455
           +L++
Sbjct: 780 TLIT 783



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 175/364 (48%), Gaps = 50/364 (13%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y ++L  G  P V+  NVL+H LCK G +  A           +    V++NT+I G C+
Sbjct: 117 YSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLR--NNDVVDIDNVTYNTVIWGFCQ 174

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +D+GF L S M   G+  D  T + L+ G C+   +  AE +++ + + G+T + + 
Sbjct: 175 KGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIG 234

Query: 237 FTTLIDGHCKNG-----------------RIDMA------------GDMKEARKIVDEMC 267
             TLIDG+C+ G                 +ID+             GD+  A  + +E+ 
Sbjct: 235 LNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEIL 294

Query: 268 -------------------TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                                 L P  +TYT L+  +CK   +E +  + K+MI  GI  
Sbjct: 295 GFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMP 354

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V  ++++ GFCR GK+ EA  + REM ++GL P+  +Y  +I+   K+G     F L 
Sbjct: 355 DVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQ 414

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M   G    + T   +M+GL K G+ K A  + +T+L L + P+ +TY+ LL+G+CK 
Sbjct: 415 SQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKL 474

Query: 429 GNPE 432
           G  E
Sbjct: 475 GKME 478



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  +  L+    KEG    A  +  E  ++ +    V++N LI G  +    D  
Sbjct: 596 GIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPR 655

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           +    ++E  G+ PD  TY+ +IN  C + + +DA  +L+EM   G+ PN V +  LI G
Sbjct: 656 YVCSRMIE-LGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGG 714

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G ++      +A   +DEM      P  IT+  L+  + +    +  L I ++++ 
Sbjct: 715 LCKTGAVE------KAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVA 768

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+EL    +  LI+ FCR G   +A+ +L EM+K G+  D  TY  +I  +C     + 
Sbjct: 769 SGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEK 828

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG----QLKNANMLLDTMLDLGVVPDDITYN 419
             +   +M  DG  P + TYN L+ GL   G     ++    L+  M + G+VP+  TY+
Sbjct: 829 ALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYD 888

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           IL+ G+ + GN +    L  E   KG V     Y  L+S  +K
Sbjct: 889 ILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAK 931



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 176/363 (48%), Gaps = 25/363 (6%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  L+    R  L          ++D G +  V   N L+   C+ G +  A  + +   
Sbjct: 200 CNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSW 259

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDE---------GF-----RLK-----SVMEGSGMRP 197
           +  +    V++NTL+   CK  +L           GF     RLK     +  E   ++P
Sbjct: 260 RSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQP 319

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
            + TY+ LI   CK   ++++  L  +M   G+ P+ V  ++++ G C++G+      + 
Sbjct: 320 TLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGK------LT 373

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA  +  EM   GL+P+ ++Y  +++   K G +  A +++ +M+ RGI  D V  T ++
Sbjct: 374 EAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVM 433

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G  + GK  EAE +   +LK+ L P+  TY+ ++D +CK G  +    +L++M  +   
Sbjct: 434 DGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVP 493

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P V T+++++NG  K G L  A  +L  M+   V+P+ I Y IL++G+ K G  +  D  
Sbjct: 494 PNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDF 553

Query: 438 QSE 440
             E
Sbjct: 554 CKE 556



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 181/383 (47%), Gaps = 63/383 (16%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDE---FGK----------------RGLHATAVSFNT 169
           +  +N L+   CK G +  A+ +F+E   F K                + L  T V++ T
Sbjct: 267 IVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTT 326

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI  +CK   ++E   L   M  +G+ PDV T S+++ G C+  +L +A +L  EM E G
Sbjct: 327 LIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMG 386

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN V + T+I+   K+GR+       EA  +  +M   G++ D +T T ++DG  K G
Sbjct: 387 LDPNHVSYATIINSLFKSGRV------MEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVG 440

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             + A ++ + ++K  +  + V ++AL+ G+C+ GK+  AE +L++M K  + P+  T++
Sbjct: 441 KTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFS 500

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ-------------- 395
            +I+ + K G       +L+EM     +P    Y  L++G  K G+              
Sbjct: 501 SIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSR 560

Query: 396 -LKNANMLLDTMLD--------------------LGVVPDDITYNILLEGHCKHGN---P 431
            L+ +N++ D +L+                     G+ PD + Y  L++G+ K GN    
Sbjct: 561 RLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAA 620

Query: 432 EDFDKLQSEKGLVSDYACYTSLV 454
               +   EK +  D   Y +L+
Sbjct: 621 LSIVQEMKEKNIRFDVVAYNALI 643



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 156/321 (48%), Gaps = 10/321 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G +P    +N +++  C +GK +DA  + +E    G+   AV++N LI G CK   
Sbjct: 661 MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGA 720

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++       M      P   T+  L+    +  + D    +  ++   GL  +  ++ T
Sbjct: 721 VEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNT 780

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI   C+       G  ++A+ ++DEM   G++ D +TY  L+ G+C    +E AL    
Sbjct: 781 LITVFCR------LGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYS 834

Query: 300 EMIKRGIELDNVAFTALISGFCRGG----KVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           +M   GI  +   +  L+ G    G     + E E+++ EM + GL P+ ATY +++  +
Sbjct: 835 QMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGY 894

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            + G+ K    L  EM + G +P ++TYN L++   K G++  A  LL+ +L  G +P+ 
Sbjct: 895 GRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNS 954

Query: 416 ITYNILLEGHCKHGNPEDFDK 436
            TY+IL  G        + D+
Sbjct: 955 FTYDILTCGWLNLSYEPEIDR 975



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 11/305 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +N L+  L + GK  D + V     + GL    +++NT+IN +C     ++   + +
Sbjct: 636 VVAYNALIKGLLRLGKY-DPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILN 694

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M+  G+ P+  TY+ LI GLCK   ++ AE  L EM      P  +    L+  + ++ 
Sbjct: 695 EMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSE 754

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           + D      +  +I +++  +GL      Y  L+  FC+ G    A  +  EM+KRGI  
Sbjct: 755 KAD------KILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISA 808

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG----DTKTG 364
           D V + ALI G+C G  V +A +   +M   G+ P+  TY  ++      G      +  
Sbjct: 809 DLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEET 868

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +L+ EM   G +P   TY+ L++G  + G  K   +L   M+  G VP   TYN+L+  
Sbjct: 869 EKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISD 928

Query: 425 HCKHG 429
           + K G
Sbjct: 929 YAKSG 933



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 33/263 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+  YG  P+   +N+L+  LCK G ++ A+   DE        T ++   L+  + +++
Sbjct: 695 EMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSE 754

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D+  ++   +  SG+   +  Y+ LI   C+      A+++L EM +RG++ + V + 
Sbjct: 755 KADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYN 814

Query: 239 TLIDGHCKNGRIDMA-----------------------GDMKEA----------RKIVDE 265
            LI G+C    ++ A                       G +  A           K+V E
Sbjct: 815 ALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSE 874

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GL P+  TY IL+ G+ + G+ +  + +  EMI +G       +  LIS + + GK
Sbjct: 875 MNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGK 934

Query: 326 VVEAERMLREMLKVGLKPDDATY 348
           ++EA  +L ++L  G  P+  TY
Sbjct: 935 MIEARELLNDLLTKGRIPNSFTY 957



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 10/223 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   S+ V+N L+   C+ G  + A++V DE  KRG+ A  V++N LI G+C   ++++ 
Sbjct: 770 GLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKA 829

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL----LLHEMCERGLTPNDVIFTT 239
            +  S M   G+ P++ TY+ L+ GL     +++       L+ EM ERGL PN   +  
Sbjct: 830 LKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDI 889

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+ G+   GR+   G+ K+   +  EM T G  P   TY +L+  + K G +  A ++  
Sbjct: 890 LVSGY---GRV---GNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLN 943

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +++ +G   ++  +  L  G+       E +R L+   ++ +K
Sbjct: 944 DLLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLKRSYEIEVK 986



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 32/317 (10%)

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
           H     F TLI  +             S M   G+ P +  ++ L+        +   +L
Sbjct: 56  HLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKL 115

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           +  +M   G+ P+      L+   CK G +D+A        +VD         D +TY  
Sbjct: 116 MYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVD--------IDNVTYNT 167

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++ GFC++G ++    +  EM+KRG+  D++    L+ G+CR G V  AE ++  ++  G
Sbjct: 168 VIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGG 227

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLK-EMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           +  D      +ID +C+ G       L++   RSD  +  V TYN L+   CK G L  A
Sbjct: 228 VTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIV-TYNTLLKAFCKTGDLTRA 286

Query: 400 NMLLDTMLDL-------------------GVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             L + +L                      + P  +TY  L+  +CK    E+   L  +
Sbjct: 287 ESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKK 346

Query: 441 ---KGLVSDYACYTSLV 454
               G++ D    +S++
Sbjct: 347 MIMNGIMPDVVTCSSIL 363


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 174/342 (50%), Gaps = 9/342 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +PSV  + +L+  LCK  +I DA ++ ++  + G     V++NTLING CK  N+DE   
Sbjct: 99  APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVV 158

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M  +   PDV+TY+ LI+G CK+ R  D   LL EM + G  PN + + TL+D   
Sbjct: 159 LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 218

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G+        +A  +   M      P   T+ +++D FCK G L+ A ++ + M  RG
Sbjct: 219 KSGK------YIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 272

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D   +  +ISG CR  ++ +A ++L  M + G  PD  TY  ++   CK       +
Sbjct: 273 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAY 332

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            + + +R+ G+   V T + L++GLCK  +L +A  LL  M   G  PD + Y IL+ G 
Sbjct: 333 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 392

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
           CK    +      SE   KG V     Y+ ++ K  K  + R
Sbjct: 393 CKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVR 434



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 7/337 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C CL+   +R          +   L    SP    ++ L++  CK    + A  + DE  
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           KRG+      +NT+I G C    +D        M+     P V TY+ L++ LCK  R+ 
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSARIS 119

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           DA L+L +M E G  PN V + TLI+G CK       G+M EA  + ++M  N  +PD  
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCK------LGNMDEAVVLFNQMLENSCSPDVF 173

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY IL+DG+CK+   +    + +EM+K G E + + +  L+    + GK ++A  + + M
Sbjct: 174 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 233

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L+   KP   T+ ++ID FCK G     + L + M   G LP + TYN +++G C+  ++
Sbjct: 234 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 293

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            +A  LL+ M + G  PD +TYN ++ G CK    ++
Sbjct: 294 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDE 330



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 174/333 (52%), Gaps = 10/333 (3%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L+    ++ K ++A  +F           +++++TLING CKA++  + +RL   ME 
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P    Y+ +I GLC   R+D A +   +M +R   P+ + +T L+D  CK+ RI  
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARI-- 118

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                +A  I+++M   G  P+ +TY  L++GFCK G+++ A+ +  +M++     D   
Sbjct: 119 ----SDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 174

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  LI G+C+  +  +  ++L+EM+K G +P+  TY  ++D   K+G     F L + M 
Sbjct: 175 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 234

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
                P+  T+N +++  CK GQL  A  L   M D G +PD  TYNI++ G C+    +
Sbjct: 235 RRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRID 294

Query: 433 DFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
           D  +L    +E G   D   Y S+VS   K  Q
Sbjct: 295 DARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 327



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L+   SP V+ +N+L+   CK+ + +D   +  E  K G     +++NTL++   K+ 
Sbjct: 162 QMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 221

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              + F L  +M     +P  +T++ +I+  CK  +LD A  L   M +RG  P+   + 
Sbjct: 222 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 281

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I G C+  RID      +AR++++ M   G  PD +TY  ++ G CK   ++ A ++ 
Sbjct: 282 IMISGACRANRID------DARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 335

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + +   G  LD V  + LI G C+  ++ +AE++LREM + G  PD   YT++I  FCK 
Sbjct: 336 EVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKA 395

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
                      EM   G +P V TY+ +++ LCK  ++++  MLL TML+ GV
Sbjct: 396 DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 165/342 (48%), Gaps = 6/342 (1%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           + K    S ASL    +   G     +  + L+  +  LG +D+A+  F  + ++     
Sbjct: 112 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 171

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 LID   +   P        E++ YG  P+   +N LM  L K GK  DA  +  
Sbjct: 172 VFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQ 231

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
              +R    +  +FN +I+  CK   LD  + L  +M   G  PD+YTY+ +I+G C+ N
Sbjct: 232 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 291

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           R+DDA  LL  M E G  P+ V + +++ G CK  ++D      EA ++ + +   G   
Sbjct: 292 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD------EAYEVYEVLRNGGYFL 345

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D +T + L+DG CK   L+ A  + +EM + G   D VA+T LI GFC+  ++ ++    
Sbjct: 346 DVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFF 405

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
            EML  G  P   TY++VID  CK+   + G  LLK M   G
Sbjct: 406 SEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID   +     +    +  + D G  P +Y +N+++   C+  +I DA+ + +   + G
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++N++++G CKA  +DE + +  V+   G   DV T S LI+GLCK  RLDDAE
Sbjct: 308 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 367

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM   G  P+ V +T LI G CK  ++D      ++     EM   G  P  ITY+
Sbjct: 368 KLLREMERNGSAPDVVAYTILIHGFCKADQLD------KSLAFFSEMLDKGCVPTVITYS 421

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGI 306
           I++D  CK   +     + K M++RG+
Sbjct: 422 IVIDKLCKSARVRDGCMLLKTMLERGV 448


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 195/410 (47%), Gaps = 75/410 (18%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PSV  F  ++H LC+EG + +A+ +FD     G+   A  +NTL++G+ KA+ + + 
Sbjct: 312 GVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQA 371

Query: 184 FRLKSVMEGSGMRPDVYTYSALING----------------------------------- 208
             L   M  +G+ PD  T++ L+ G                                   
Sbjct: 372 SLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSS 431

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------------- 253
           LC   RLD+A  LL E+ E+GLT + V F +LI  + + G  D A               
Sbjct: 432 LCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPS 491

Query: 254 --------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                         G ++EAR ++  M   G   +K+ YT+LLDG+ K  +LE A  + K
Sbjct: 492 SSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWK 551

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM +RGI  D VAFTALI G  + G V EA  +  EM  +G  P++  Y  +I   C  G
Sbjct: 552 EMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCG 611

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL---GVVPDDI 416
                 +L KEMR  G L    T+N +++G C+ GQ+K A   ++T LD+   G++PD  
Sbjct: 612 RVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFA---IETFLDMQRIGLLPDIF 668

Query: 417 TYNILLEGHCKH----GNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           T+NIL+ G+CK     G  E  +K+ S  GL  D   Y + +    + R+
Sbjct: 669 TFNILIGGYCKAFDMVGAGEIVNKMYS-CGLDPDITTYNTYMHGYCRMRK 717



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 171/332 (51%), Gaps = 41/332 (12%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           +++V++  LC  G++ +A  +  E  ++GL  + V+FN+LI  + +A   D+ F    +M
Sbjct: 424 LYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIM 483

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
              G  P   T ++L+ GLC++  L +A +LL+ M E+G   N V +T L+DG+ K    
Sbjct: 484 VRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFK---- 539

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               +++ A+ +  EM   G+ PD + +T L+DG  K G++E A ++  EM   G   +N
Sbjct: 540 --MNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNN 597

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            A+ +LI G C  G+V EA ++ +EM + GL  D  T+ ++ID FC+ G  K       +
Sbjct: 598 FAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLD 657

Query: 371 MRSDGHLPAVETYNALMNGLCK------------------------------HG-----Q 395
           M+  G LP + T+N L+ G CK                              HG     +
Sbjct: 658 MQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRK 717

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           +  A ++LD ++  G+VPD +TYN +L G C 
Sbjct: 718 MNQAVIILDQLISAGIVPDTVTYNTMLSGICS 749



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 221/449 (49%), Gaps = 10/449 (2%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALMIVYVDLG 73
           H L A K+   A+D++  ++++ G G +  +   +      +     VL+ L+  ++++G
Sbjct: 132 HVLAAQKLQLLAQDVVSWLIARVGTGRTNKIVDFMWRNHAMYESDFSVLNTLLRGFLNVG 191

Query: 74  FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
              +A++  R++R    R        L+  ++R          + +++  G  PS   FN
Sbjct: 192 MGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFN 251

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            ++   C++ ++   + +     K       V+FN LIN  C             +M  S
Sbjct: 252 AMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRS 311

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+ P V T++ +++ LC+E  + +A  L   + + G+ PN  I+ TL+DG+ K      A
Sbjct: 312 GVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFK------A 365

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            ++ +A  + +EM T G++PD +T+ IL+ G  K G +E +  + K++I  G+ LD+  +
Sbjct: 366 REVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLY 425

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++S  C  G++ EA ++L+E+L+ GL      +  +I  + + G     F   + M  
Sbjct: 426 DVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVR 485

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P+  T N+L+ GLC+ G L+ A +LL  ML+ G   + + Y +LL+G+ K  N E 
Sbjct: 486 CGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEG 545

Query: 434 FDKLQ---SEKGLVSDYACYTSLVSKSSK 459
              L     E+G+  D   +T+L+   SK
Sbjct: 546 AQFLWKEMKERGIYPDAVAFTALIDGLSK 574



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 202/419 (48%), Gaps = 8/419 (1%)

Query: 45  LFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
           L   +LE +G  L  +  ++L+  Y   G  D A + +R++ +  F   +  C  L+  +
Sbjct: 444 LLQELLE-KGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGL 502

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            R             +L+ G+  +   + VL+    K   ++ AQ ++ E  +RG++  A
Sbjct: 503 CRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDA 562

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           V+F  LI+G  KA N++E + +   M   G  P+ + Y++LI GLC   R+ +A  L  E
Sbjct: 563 VAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKE 622

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M ++GL  +   F  +IDG C+ G+      MK A +   +M   GL PD  T+ IL+ G
Sbjct: 623 MRQKGLLSDTFTFNIIIDGFCRRGQ------MKFAIETFLDMQRIGLLPDIFTFNILIGG 676

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           +CK  D+  A +I  +M   G++ D   +   + G+CR  K+ +A  +L +++  G+ PD
Sbjct: 677 YCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPD 736

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  ++   C +   +    L  ++   G +P V T N L++  CK G  + A +   
Sbjct: 737 TVTYNTMLSGICSDILDR-AMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKALIWGQ 795

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQK 463
            + ++    D+I+Y IL + +C   +  +  +   EK L  D+  Y +    S    QK
Sbjct: 796 KLREISFGFDEISYRILDQAYCLMQDDVELVRGTYEKHLFMDFLMYITFDYFSRNKPQK 854



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 155/321 (48%), Gaps = 7/321 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           +KG    A +    +  +G  +  +    L+  Y  +  L+ A   ++ +++      A 
Sbjct: 504 RKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAV 563

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LID + +          +LE+   G+ P+ + +N L+  LC  G++ +A  +  E 
Sbjct: 564 AFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEM 623

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            ++GL +   +FN +I+G C+   +         M+  G+ PD++T++ LI G CK   +
Sbjct: 624 RQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDM 683

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
             A  ++++M   GL P+   + T + G+C+  +      M +A  I+D++ + G+ PD 
Sbjct: 684 VGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRK------MNQAVIILDQLISAGIVPDT 737

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +TY  +L G C +  L+ A+ +  +++K G   + +    L+S FC+ G   +A    ++
Sbjct: 738 VTYNTMLSGICSD-ILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKALIWGQK 796

Query: 336 MLKVGLKPDDATYTMVIDCFC 356
           + ++    D+ +Y ++   +C
Sbjct: 797 LREISFGFDEISYRILDQAYC 817


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 178/349 (51%), Gaps = 41/349 (11%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++++G+ P ++ +N+LMH LCKEG +  A+ + +E  +RG     +++  L+NG CKA  
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 180 LDE-----------GFRLKSV------------------------MEGSGMRPDVYTYSA 204
           L+E           G  + SV                        M   G +PD++TY++
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNS 500

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LI GLCK +R+D+A  L H M   G   N+V + TLI    + G        ++A  +V+
Sbjct: 501 LIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGA------FQKALTLVN 554

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G   DKITY  L+  FCK G++E  L++ ++MI  G+  D ++   +I+G C+ G
Sbjct: 555 DMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVG 614

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           KV  A   LR+ +  G  PD  TY  V++  CK G  K    L   ++ +G  P   TYN
Sbjct: 615 KVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYN 674

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
             ++  CK G + +A +     ++ G VP ++T+N+L+    K  N E+
Sbjct: 675 TFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 191/433 (44%), Gaps = 82/433 (18%)

Query: 82  FRLLRKHYFRI--PARGCRCLIDR-------------------MMRTNLPTVTLGFYLEI 120
           F ++ KHY +   P +  R L+D                    ++  N P V    + ++
Sbjct: 150 FMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDM 209

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G SP+V+ F ++M  LC   ++  A  +  +  K G    ++ + TLI+   +   +
Sbjct: 210 LSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQV 269

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E  +L   M   G  PDV T++ +I+GLCK N++ DA  L+  M  RG  P+++ +  L
Sbjct: 270 SEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL 329

Query: 241 IDGHCKNGRID-------------------------MAGDMKEA---------------- 259
           + G C+ G+++                         M+G +KEA                
Sbjct: 330 LHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPD 389

Query: 260 --------------------RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                               R +V+EM   G  P+ ITY IL++G CK G LE A  +  
Sbjct: 390 IFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLH 449

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  RG+ +++V +  LI   CR  KV  A  +L EM   G KPD  TY  +I   CK  
Sbjct: 450 EMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVD 509

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                FRL   M  DG +    TYN L++ L + G  + A  L++ ML  G   D ITYN
Sbjct: 510 RIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 420 ILLEGHCKHGNPE 432
            L++  CK GN E
Sbjct: 570 GLIKAFCKVGNIE 582



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 189/421 (44%), Gaps = 71/421 (16%)

Query: 83  RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY-----GYSPSVYVFNVLMH 137
           +L + H    P + C+ L    +  ++PT+     LEI +      GY  +  V+ V ++
Sbjct: 69  KLRKSHILITPVQLCKLL---ELPLDVPTL-----LEIFERVGGQKGYCHTFDVYYVFIN 120

Query: 138 KLCKEGK----------IKDAQMVFDE---------FGKRGLHATAVSF----------- 167
           KL   GK          +K+  +VF E         +GK G    A+             
Sbjct: 121 KLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCE 180

Query: 168 ----------NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
                       L+ G+C     +  + + S     G+ P V+T+  ++  LC  N +D 
Sbjct: 181 PTFKSYDLVLEILVTGNCPQVATNVFYDMLS----KGVSPTVFTFGIVMKALCMFNEVDS 236

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  LL +M + G  PN +++ TLI    +  ++       EA K+++EM   G  PD  T
Sbjct: 237 ACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVS------EALKLLEEMFVMGCMPDVQT 290

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  ++ G CK   +  A  +   M+ RG   DN+ +  L+ G CR GK+ EA ++L   +
Sbjct: 291 FNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKIL---I 347

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE-MRSDGHLPAVETYNALMNGLCKHGQL 396
           K+   P++A    +I+ +  +G  K     L E M + G  P + TYN LM+GLCK G L
Sbjct: 348 KIPC-PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSL 406

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSL 453
             A  L++ M   G  P+ ITY IL+ G CK G  E+   +    S +GL  +   Y  L
Sbjct: 407 SFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCL 466

Query: 454 V 454
           +
Sbjct: 467 I 467



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 160/369 (43%), Gaps = 23/369 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+  +  Y+ ++H L      S ARDL++ + S++G   +   +A ++        GL  
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGCEPNVITYAILVN-------GLC- 436

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
                     G L++A      +      I +    CLI  + R     V L    E+  
Sbjct: 437 --------KAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCT 488

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P ++ +N L++ LCK  +I +A  +F      G  A  V++NTLI+   +     +
Sbjct: 489 KGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQK 548

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + M   G   D  TY+ LI   CK   ++    L  +M   GL  + +    +I+
Sbjct: 549 ALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMIN 608

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK G++D       A + + +    G  PD +TY  +L+G CK G ++ AL++   + 
Sbjct: 609 GLCKVGKVD------NAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQ 662

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G+  D   +   IS  C+ G V +A       ++ G  P + T+ +++    K  + +
Sbjct: 663 VEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQE 722

Query: 363 TGFRLLKEM 371
             F +L E+
Sbjct: 723 NNFFVLDEL 731


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 170/315 (53%), Gaps = 10/315 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P++  FN L+   C+E  ++ A  +       G+ A  V++NTL++G CKA  
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L E  +L   M+ SG  PDV  YS+ + GLCK  ++ +A  +L +M +    PN V + T
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNT 262

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++DG CK+G+ID A +M E     D     G   + + Y+ ++DG CK G  + A  + +
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSD-----GCGLNVVGYSTVVDGLCKLGRTQEARSVME 317

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M + G   D V +++L++G C+ GK+ EA   +REM   G KP+  TY  ++   C  G
Sbjct: 318 AMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCG 377

Query: 360 DTKTGFRLLKEMRS-----DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
                 R+++EM S     D   P+V TYNAL+ GLCK G++ +A      M   G  PD
Sbjct: 378 RLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPD 437

Query: 415 DITYNILLEGHCKHG 429
            ++Y+ ++EG  + G
Sbjct: 438 GVSYSTIVEGLARSG 452



 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 192/346 (55%), Gaps = 17/346 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P   ++  +M  LCK  ++ +A  + +E  + G   T ++FNTLI+G C+ K
Sbjct: 107 EVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL+    L   M  SG++ DV TY+ L++GLCK  RL +AE LL  M   G  P+ V ++
Sbjct: 167 NLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYS 226

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           + + G CK+G++        A +++++M  +  +P+ +TY  +LDG CK G +++AL++ 
Sbjct: 227 SFVYGLCKSGKV------LNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMM 280

Query: 299 KEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           ++M    G  L+ V ++ ++ G C+ G+  EA  ++  M + G +PD  TY+ +++  CK
Sbjct: 281 EQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCK 340

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV----- 412
            G  +     ++EM  +G  P   TY +L++GLC  G+L  A  +++ M   G       
Sbjct: 341 AGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCP 400

Query: 413 PDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           P   TYN L+ G CK G  +D    F +++S+ G   D   Y+++V
Sbjct: 401 PSVSTYNALIGGLCKAGRIDDALKFFQRMRSQ-GCDPDGVSYSTIV 445



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 183/366 (50%), Gaps = 35/366 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   FN L++   K+G+  D + + +    RG+    VS+N L+ G CK +   E 
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 184 FRLKSVMEGSGMR--PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
             L   M   G R  PD+ TYS L++G CK  +++++  LL E+  RGL P+ +++T ++
Sbjct: 65  EELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVM 124

Query: 242 DGHCKNGRID------------------------MAGDMKE-----ARKIVDEMCTNGLN 272
              CK+ R+                         ++G  +E     A  ++  M  +G+ 
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVK 184

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            D +TY  L+DG CK G L+ A  + + M   G   D VA+++ + G C+ GKV+ A ++
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQV 244

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM-RSDGHLPAVETYNALMNGLC 391
           L +M      P+  TY  ++D  CK+G   T   ++++M  SDG    V  Y+ +++GLC
Sbjct: 245 LEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLC 304

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
           K G+ + A  +++ M   G  PD +TY+ L+ G CK G  E+  +   E   +G   +  
Sbjct: 305 KLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAV 364

Query: 449 CYTSLV 454
            Y SLV
Sbjct: 365 TYCSLV 370



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 171/304 (56%), Gaps = 12/304 (3%)

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G    +V+FN L+NG  K     +  RL   M   G++P+V +Y+ L+ GLCK  R  
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH 62

Query: 217 DAELLLHEMCERG--LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +AE L+ +M  RG   TP+ V ++TL+ G+CK G+++      E+R+++ E+ + GL PD
Sbjct: 63  EAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVE------ESRELLKEVISRGLRPD 116

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + YT ++   CK   L  AL++ +EMI+ G     + F  LISG CR   +  A+ +L+
Sbjct: 117 ALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQ 176

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M   G+K D  TY  ++D  CK G  +   +LL+ M++ G  P V  Y++ + GLCK G
Sbjct: 177 TMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSG 236

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACY 450
           ++ NA+ +L+ M D    P+ +TYN +L+G CK G      E  +++ S  G   +   Y
Sbjct: 237 KVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296

Query: 451 TSLV 454
           +++V
Sbjct: 297 STVV 300



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 115/217 (52%), Gaps = 12/217 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKA 177
           ++ D  + P+V  +N ++  LCK GKI  A  + ++     G     V ++T+++G CK 
Sbjct: 247 QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
               E   +   M  +G RPDV TYS+L+NGLCK  ++++A   + EM   G  PN V +
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCT-----NGLNPDKITYTILLDGFCKEGDLE 292
            +L+ G C  GR+       EA ++V+EM +     +   P   TY  L+ G CK G ++
Sbjct: 367 CSLVHGLCSCGRL------AEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRID 420

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            AL   + M  +G + D V+++ ++ G  R G+ ++A
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 201/424 (47%), Gaps = 20/424 (4%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDA 64
           TL  +  ++H L   +    A  +L  I+    +   + LF S+L + R       V D 
Sbjct: 114 TLETHCIILHILTKRRKFKSAESILRSIIESCSIDFPSKLFESLLYSYRLCDSSPHVFDL 173

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L   +  L    +A   F  ++ + F      C   +  ++  +   + L FY E+    
Sbjct: 174 LFKTFAHLKKFRNASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSR 233

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+ Y  N+++   CK G++  A +VF+E G  G      S+NTLI G+C    L    
Sbjct: 234 IYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAM 293

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +L+SVME +G+ PDV T++ L+NG CK  +L +A  L  EM    L+P  V +  LI+G+
Sbjct: 294 KLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGY 353

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K G  +M        ++ +EM    +  D +TY  L+ G CKEG  + A  + +E+ ++
Sbjct: 354 SKAGNCEMGN------RLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEK 407

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  +   F+ALI G C   +   A ++ + M+K    P D T+ M++  FC+N D    
Sbjct: 408 GLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGA 467

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML-------------LDTMLDLGV 411
            +LL+EM +    P V     L  GL + G++K A ML              D +   G+
Sbjct: 468 VQLLEEMLNRHKAPDVNNLYELCAGLGQCGKVKTAMMLCSELEAQRLLPEGFDKLKAFGL 527

Query: 412 VPDD 415
           +PD+
Sbjct: 528 LPDN 531



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 156/340 (45%), Gaps = 15/340 (4%)

Query: 102 DRMMRTNLPTVTLGF---YLEILDYGY---SPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           + ++R+ + + ++ F     E L Y Y     S +VF++L        K ++A   F   
Sbjct: 135 ESILRSIIESCSIDFPSKLFESLLYSYRLCDSSPHVFDLLFKTFAHLKKFRNASDTFCRM 194

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G   T  S N  ++        D        M  S + P+ YT + +I   CK  RL
Sbjct: 195 KDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLVICACCKLGRL 254

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A ++  EM   G +PN   + TLI G+C  G +        A K+   M  NG+ PD 
Sbjct: 255 DKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLS------SAMKLRSVMEKNGVPPDV 308

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +T+  L++GFCK G L+ A  +  EM    +    V +  LI+G+ + G      R+  E
Sbjct: 309 VTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEE 368

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M +  +K D  TY  +I   CK G TK    L++E+   G +P   T++AL+ G C   Q
Sbjct: 369 MSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQ 428

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
            + A  +  +M+     P D T+ +LL   C++   ED+D
Sbjct: 429 SERAFQIYKSMIKSSFTPCDQTFRMLLSTFCEN---EDYD 465



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           GD+  AL   +EM +  I  ++     +I   C+ G++ +A  +  EM  +G  P+ A+Y
Sbjct: 219 GDI--ALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASY 276

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +I  +C  G   +  +L   M  +G  P V T+N L+NG CK G+L+ A+ L   M  
Sbjct: 277 NTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKG 336

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKG---LVSDYACYTSLV 454
           + + P  +TYNIL+ G+ K GN E  ++L  E     + +D   Y +L+
Sbjct: 337 MSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALI 385


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 222/444 (50%), Gaps = 13/444 (2%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDALMIVYVDLG 73
           H L   K  ++ R +L  ++  +G GS+ SL   +L + R      +V D L   Y    
Sbjct: 134 HVLARKKRLNELRLVLDQMLLHEGSGSAPSLCELLLGSFRSWDSSNVVWDMLACAYSRSA 193

Query: 74  FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
            + DA+     ++   F +  +    L+  +  +N   +    Y EI   G   S Y  +
Sbjct: 194 MVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHSN---IMWDVYNEIKVSGTPQSEYTSS 250

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +++  LC++ + +DA + F +   +    + VSFNT+++ +CK   +D       +M   
Sbjct: 251 IVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKH 310

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+ PD Y+Y+ LI+GLC    + +A  L ++M   GL P+ V +  L  G        + 
Sbjct: 311 GLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKG------FRLL 364

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G +  A  I+ +M   G NP+ +TYT+L+ G C+ G++E AL + KEMI  G +L  ++ 
Sbjct: 365 GLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISS 424

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           T L+   C+  +V  A ++  EM   GL+PD  TY+ +I   CK G+ +    L ++M S
Sbjct: 425 TVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCS 484

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +  +P    + A++ GLC+ G++  A M  D ++   +  D I YNI+++G+ K GN  +
Sbjct: 485 NRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTRE 544

Query: 434 FDKLQS---EKGLVSDYACYTSLV 454
             KL     EKG+      + SL+
Sbjct: 545 AVKLYKQLGEKGISPTIVTFNSLM 568



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 213/406 (52%), Gaps = 10/406 (2%)

Query: 58  PGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P LV   ++I  +  +G +++A++ ++ +  H F++       L+  + ++    V    
Sbjct: 384 PNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKL 443

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+   G  P +  ++ L+H LCK+G+++ A +++++     +   ++    ++ G C+
Sbjct: 444 FCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCE 503

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + +       +  S +  D+  Y+ +I+G  K     +A  L  ++ E+G++P  V 
Sbjct: 504 KGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVT 563

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F +L+ G C N +      + +AR+++D +  +GL P+ +TYT L++ +C+EG+++S L+
Sbjct: 564 FNSLMYGFCINRK------LSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLE 617

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EM  + I   ++ +T +I G C+  K+ E+ ++L +M  VGL PD  +Y  +I  FC
Sbjct: 618 LLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFC 677

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K  D +  F+L  +M      P   TYN L+NG C +G LK+A+ LL ++ +  V  +  
Sbjct: 678 KARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKY 737

Query: 417 TYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSK 459
            Y  +++ HC  G+ +    + +   EKG       Y++++ +  K
Sbjct: 738 AYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCK 783



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 6/311 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID  ++       +  Y ++ + G SP++  FN LM+  C   K+  A+ + D     G
Sbjct: 532 MIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHG 591

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   AV++ TL+N +C+  N+     L S M+   + P   TY+ +I GLCK+ +L ++ 
Sbjct: 592 LEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESC 651

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   GLTP+ V + T+I   CK      A DM++A ++ D+M  + L P  +TY 
Sbjct: 652 QLLEDMDAVGLTPDQVSYNTIIQAFCK------ARDMRKAFQLYDKMLLHNLEPTSVTYN 705

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL++GFC  GDL+ A ++   +  R + L+  A+T +I   C  G V +A    R+M++ 
Sbjct: 706 ILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEK 765

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G +     Y+ VI   CK             M SDG  P  + +  L+N   + G L + 
Sbjct: 766 GFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSE 825

Query: 400 NMLLDTMLDLG 410
             LL  M+  G
Sbjct: 826 FELLAEMIKSG 836



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 156/309 (50%), Gaps = 8/309 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           S  + ++N+++    K G  ++A  ++ + G++G+  T V+FN+L+ G C  + L +  R
Sbjct: 523 SLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARR 582

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   ++  G+ P+  TY+ L+N  C+E  +     LL EM  + + P  + +T +I G C
Sbjct: 583 LLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLC 642

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  +      ++E+ +++++M   GL PD+++Y  ++  FCK  D+  A  +  +M+   
Sbjct: 643 KQWK------LQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHN 696

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E  +V +  LI+GFC  G + +A+ +L  +    +  +   YT +I   C  GD     
Sbjct: 697 LEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAV 756

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG- 424
              ++M   G   ++  Y+A++  LCK   +  A      ML  GV PD   + +LL   
Sbjct: 757 VYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAF 816

Query: 425 -HCKHGNPE 432
             C H N E
Sbjct: 817 HQCGHLNSE 825


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 177/336 (52%), Gaps = 9/336 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++ ++N+++   CK+     A+ ++ +    G+    +++ +LI G C+     E  +L
Sbjct: 222 PNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQL 281

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    + P+VYT++ LI+  C++ ++ +A+ + + M +RG  P+ V F TLI GHC 
Sbjct: 282 MCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHC- 340

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                + G++ EARK+ D +   G+ PD  +YTIL+ G+CK   ++ A+ +  EM  + +
Sbjct: 341 -----LHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNM 395

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V +++LI G C+ G++  A  +   +   G  P+  TY ++ID FCK  D   G  
Sbjct: 396 VLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIE 455

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L K M   G  P V TYN L+NG CK  +++ A  LL  M    + PD ITYN L +G C
Sbjct: 456 LFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLC 515

Query: 427 KHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSK 459
           K G   D     K+    G   D A Y  L+    K
Sbjct: 516 KSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCK 551



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 182/351 (51%), Gaps = 15/351 (4%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  GY P+      +M  LC  G+++ A    D    +G+    V + TLING CK   
Sbjct: 145 VLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGR 204

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             + F+L   MEG  ++P++  Y+ +I+  CK+     A  L  ++ + G+ P+ + +T+
Sbjct: 205 SIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTS 264

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C+ G+        E ++++ EM    +NP+  T+ +L+D FC++G +  A  +  
Sbjct: 265 LIRGFCRTGQ------WGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFN 318

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M+KRG + D V F  LISG C  G V+EA ++   + + G+ PD  +YT++I  +CK  
Sbjct: 319 LMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCK 378

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  L  EMR    +  +  Y++L++GLCK G++  A  L  T+ + G  P+ ITYN
Sbjct: 379 RIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYN 438

Query: 420 ILLEGHCKHGNPEDFD------KLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           IL++  CK    +D D      KL   KGL      Y  L++   K ++ R
Sbjct: 439 ILIDAFCK---IQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIR 486



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/274 (36%), Positives = 157/274 (57%), Gaps = 6/274 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++   +P+VY FNVL+   C++GK+ +AQ +F+   KRG     V+FNTLI+GHC   
Sbjct: 284 EMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHG 343

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E  +L   +   G+ PDV++Y+ LI G CK  R+D+A  L +EM  + +  + V+++
Sbjct: 344 NVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYS 403

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LIDG CK+GRI  A ++         +  +G  P+ ITY IL+D FCK  D++  +++ 
Sbjct: 404 SLIDGLCKSGRISYAWEL------FSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELF 457

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M  +G+    + +  LI+G+C+  ++ EA  +L  M    L PD  TY  + D  CK+
Sbjct: 458 KLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKS 517

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           G     + L K M   G    V TYN L++  CK
Sbjct: 518 GRISDAWELFKVMHVGGPPVDVATYNVLLDAFCK 551



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 166/342 (48%), Gaps = 32/342 (9%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           I DA  +F+         + + FNT+I    K K+      L   M   G+ P ++T S 
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK--- 261
            IN  C    +  A  +L  + +RG  PN++  TT++ G C NG +  A D  +      
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 262 -IVDEMC----TNGL---------------------NPDKITYTILLDGFCKEGDLESAL 295
            ++DE+C     NGL                      P+ + Y +++D FCK+     A 
Sbjct: 185 MLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKAR 244

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           D+  +++  GI+ D + +T+LI GFCR G+  E ++++ EM+   + P+  T+ ++ID F
Sbjct: 245 DLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAF 304

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G       +   M   G  P + T+N L++G C HG +  A  L DT+ + G++PD 
Sbjct: 305 CRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDV 364

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            +Y IL+ G+CK    ++   L +E   K +V D   Y+SL+
Sbjct: 365 WSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLI 406



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 6/207 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + + G  P V+ + +L+   CK  +I +A  +F+E   + +    V +++LI+G CK+  
Sbjct: 355 VFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGR 414

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +   + L S +   G  P+V TY+ LI+  CK   +D    L   MC +GLTP  + +  
Sbjct: 415 ISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNI 474

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI+G+CK+ RI      +EA  ++  M +  L PD ITY  L DG CK G +  A ++ K
Sbjct: 475 LINGYCKSKRI------REAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFK 528

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKV 326
            M   G  +D   +  L+  FC+   V
Sbjct: 529 VMHVGGPPVDVATYNVLLDAFCKAQDV 555


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 177/361 (49%), Gaps = 46/361 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLD- 181
           G +P+ Y +  ++   CK G++ +A  VFDE   +G +   AV +N LI G+C    LD 
Sbjct: 103 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 162

Query: 182 ----------------------------------EGFRLKSVMEGSGMRPDVYTYSALIN 207
                                             E + L   M G G+ PDV+TY+ LIN
Sbjct: 163 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILIN 222

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G CKE  +  A  +   M  RG+    V +T+LI    K G++      +E  K+ DE  
Sbjct: 223 GHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQV------QETDKLFDEAV 276

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G+ PD + Y  L++     G+++ A +I  EM K+ I  D+V +  L+ G C  G+V 
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 336

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA +++ EM K G++PD  TY  +I  +   GD K   R+  EM + G  P + TYNAL+
Sbjct: 337 EARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALI 396

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDY 447
            GLCK+GQ  +A  ++  M++ G+ PDD TY  L+EG       ED   +  E+   +D 
Sbjct: 397 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTT----EDERAIDDERLAAADA 452

Query: 448 A 448
           A
Sbjct: 453 A 453



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 190/384 (49%), Gaps = 26/384 (6%)

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGF---------------YLEILDYGYSPSVYVFNVLM 136
           +P+     L   M R  LP  T  F                LE+L     P+   +N ++
Sbjct: 20  LPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 79

Query: 137 HKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG- 194
              C  G+++ A  +  E  +RG +     ++ T+I+G CK   +DE  ++   M   G 
Sbjct: 80  AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 139

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           ++P+   Y+ALI G C + +LD A L    M ERG+      +  L+     +GR     
Sbjct: 140 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR----- 194

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA ++V+EM   GL PD  TY IL++G CKEG+++ AL+I + M +RG+    V +T
Sbjct: 195 -GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 253

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           +LI    + G+V E +++  E ++ G++PD   Y  +I+    +G+    F ++ EM   
Sbjct: 254 SLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 313

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              P   TYN LM GLC  G++  A  L+D M   G+ PD +TYN L+ G+   G+ +D 
Sbjct: 314 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDA 373

Query: 435 DKLQSE---KGLVSDYACYTSLVS 455
            ++++E   KG       Y +L+ 
Sbjct: 374 LRIRNEMMNKGFNPTLLTYNALIQ 397



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 7/328 (2%)

Query: 69  YVDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +  +G +D+A++ F  +L K   +  A     LI            L +   +++ G + 
Sbjct: 118 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 177

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+L+H L  +G+  +A  + +E G +GL     ++N LINGHCK  N+ +   + 
Sbjct: 178 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 237

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+R  V TY++LI  L K+ ++ + + L  E   RG+ P+ V++  LI+ H  +
Sbjct: 238 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 297

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G ID       A +I+ EM    + PD +TY  L+ G C  G ++ A  +  EM KRGI+
Sbjct: 298 GNID------RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQ 351

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V +  LISG+   G V +A R+  EM+  G  P   TY  +I   CKNG       +
Sbjct: 352 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 411

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +KEM  +G  P   TY +L+ GL    +
Sbjct: 412 VKEMVENGITPDDSTYISLIEGLTTEDE 439



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G  P +  +N L+     +G +KDA  + +E   +G + T +++N LI G CK  
Sbjct: 344 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 403

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR--LDDAEL 220
             D+   +   M  +G+ PD  TY +LI GL  E+   +DD  L
Sbjct: 404 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 447


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/424 (30%), Positives = 203/424 (47%), Gaps = 20/424 (4%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G    A+    ILE  G     +  + L+  Y   G +D+A+Q          R+     
Sbjct: 163 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLD-------RMNVAPD 215

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYS----PSVYVFNVLMHKLCKEGKIKDAQMVFD 153
               + ++RT   +  L   +E+LD        P V  + +L+   CKE  +  A  + D
Sbjct: 216 VVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLD 275

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   +G     V++N LING CK   LDE  +  + M   G +P+V T++ ++  +C   
Sbjct: 276 EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTG 335

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           R  DAE LL +M  +G +P+ V F  LI+  C+ G +  A D      I+++M  +G  P
Sbjct: 336 RWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID------ILEKMPMHGCTP 389

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           + ++Y  LL GFCKE  ++ A++    M+ RG   D V +  L++  C+ GKV  A  +L
Sbjct: 390 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 449

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            ++   G  P   TY  VID   K G T+   +LL EMR  G  P + TY++L++GL + 
Sbjct: 450 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 509

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
           G++  A      +  LG+ P+ ITYN ++ G CK    +   DF      K      A Y
Sbjct: 510 GKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATY 569

Query: 451 TSLV 454
           T L+
Sbjct: 570 TILI 573



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 176/351 (50%), Gaps = 16/351 (4%)

Query: 115 GF-YLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF +LE + Y G  P +     L+   C+ GK K A  V +   + G     +++N LI+
Sbjct: 133 GFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLIS 192

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CK+  +D   +   V++   + PDV TY+ ++  LC   +L  A  +L    ++   P
Sbjct: 193 GYCKSGEIDNALQ---VLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYP 249

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + +T LI+  CK   +       +A K++DEM   G  PD +TY +L++G CKEG L+
Sbjct: 250 DVITYTILIEATCKESGVG------QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+     M   G + + +    ++   C  G+ ++AE++L +ML+ G  P   T+ ++I
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  C+ G       +L++M   G  P   +YN L++G CK  ++  A   LD M+  G  
Sbjct: 364 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 423

Query: 413 PDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           PD +TYN LL   CK G      E  ++L S KG       Y +++   SK
Sbjct: 424 PDIVTYNTLLTALCKDGKVDVAVEILNQLSS-KGCSPVLITYNTVIDGLSK 473



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 186/394 (47%), Gaps = 20/394 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFR--IP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDY-GYSPS 128
           G L+D    F+ L    +R  IP    C  LI    R    T    + +EIL+  G  P 
Sbjct: 128 GELEDG---FKFLESMVYRGDIPDIIPCTSLIRGFCRIG-KTKKATWVMEILEQSGAVPD 183

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +NVL+   CK G+I +A  V D      +    V++NT++   C +  L +   +  
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
                   PDV TY+ LI   CKE+ +  A  LL EM  +G  P+ V +  LI+G CK G
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R+D      EA K ++ M + G  P+ IT+ I+L   C  G    A  +  +M+++G   
Sbjct: 301 RLD------EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP 354

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V F  LI+  CR G +  A  +L +M   G  P+  +Y  ++  FCK          L
Sbjct: 355 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 414

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M S G  P + TYN L+  LCK G++  A  +L+ +   G  P  ITYN +++G  K 
Sbjct: 415 DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 474

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           G  E   KL  E   KGL  D   Y+SLVS  S+
Sbjct: 475 GKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 508



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 12/323 (3%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           + +L + G+++D     +    RG     +   +LI G C+     +   +  ++E SG 
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PDV TY+ LI+G CK   +D+A  +L  M    + P+ V + T++   C +G+      
Sbjct: 181 VPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGK------ 231

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +K+A +++D        PD ITYTIL++  CKE  +  A+ +  EM  +G + D V +  
Sbjct: 232 LKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNV 291

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI+G C+ G++ EA + L  M   G +P+  T+ +++   C  G      +LL +M   G
Sbjct: 292 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 351

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE--- 432
             P+V T+N L+N LC+ G L  A  +L+ M   G  P+ ++YN LL G CK    +   
Sbjct: 352 CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 411

Query: 433 DFDKLQSEKGLVSDYACYTSLVS 455
           ++  +   +G   D   Y +L++
Sbjct: 412 EYLDIMVSRGCYPDIVTYNTLLT 434



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           R G++ +  + L  M+  G  PD    T +I  FC+ G TK    +++ +   G +P V 
Sbjct: 126 RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 185

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----PEDFDKL 437
           TYN L++G CK G++ NA  +LD M    V PD +TYN +L   C  G      E  D+ 
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDR- 241

Query: 438 QSEKGLVSDYACYTSLVSKSSK 459
           Q +K    D   YT L+  + K
Sbjct: 242 QLQKECYPDVITYTILIEATCK 263


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 185/332 (55%), Gaps = 9/332 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + ++      +  + +++D    P V  +  L+  L K+ ++K+A  +F+E   +G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVME-GSGMRPDVYTYSALINGLCKENRLDDA 218
            H T V++NT+I+G CK   ++    L   M    G RP V TYS LI+GLC+++ +D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL EM  RG  PN V + TL++     GR       KEA  ++++M  NG  P+ IT+
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGR------SKEAFSLLEQMAANGCPPELITF 174

Query: 279 TILLDGFCKEGDLESALDIRKE--MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            +++ G CKEG++E+A  +  E  MI+ G+  D + F +++ G C+  ++++A  + +  
Sbjct: 175 GLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 234

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L+ G +P+  TY+ +ID   K        +LL +M   G      TY+ +++GL K G++
Sbjct: 235 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 294

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           ++A ++L  M D G +PD +TYN L++G  K 
Sbjct: 295 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKR 326



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 179/358 (50%), Gaps = 42/358 (11%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G SP V  FN ++  LCKE +I DA  VF    +RG     V+++TLI+G  K   
Sbjct: 199 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 258

Query: 180 LDEGFRL----------------KSVMEG-------------------SGMRPDVYTYSA 204
           +DE  +L                 +V++G                   +G  PD  TY+ 
Sbjct: 259 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 318

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LI+G  K  RL +A  LL EM E G  P+ V +TTL  G C++GR D      EA +I+D
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFD------EAVEILD 372

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRG 323
            M   G  P+ ITY+ ++DG CK G +  AL   ++M +  +   +V A++ALI G C+ 
Sbjct: 373 YMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKA 432

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           GK+ EA   L  M++ G  PD  T++++I+  C  G   TG  L + M   G +P + TY
Sbjct: 433 GKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTY 492

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441
             L++ LC+  ++  A  L   M   G+ PD  T   ++ G  +    ED  ++Q E+
Sbjct: 493 ATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDEE 550



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 177/338 (52%), Gaps = 12/338 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G+ P+V  ++ L+  LC++ ++     + +E   RG    AV++NTL+N         E
Sbjct: 95  FGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKE 154

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM--CERGLTPNDVIFTTL 240
            F L   M  +G  P++ T+  +I GLCKE  ++ A  ++ EM   E GL+P+ + F ++
Sbjct: 155 AFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSV 214

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           +DG CK  RI       +A  +       G  P+ +TY+ L+DG  K   ++ AL +  +
Sbjct: 215 LDGLCKEQRI------LDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK 268

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M++ G   + V ++ ++ G  + G++ +A  +LR+M   G  PD  TY  +ID F K   
Sbjct: 269 MVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQR 328

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +    LL+EM   G  P+V TY  L +GLC+ G+   A  +LD M   G  P+ ITY+ 
Sbjct: 329 LREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSS 388

Query: 421 LLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           +++G CK G   +    F+K+  ++ +      Y++L+
Sbjct: 389 IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALI 426



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 197/419 (47%), Gaps = 33/419 (7%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV- 68
           Y+T+V+ L+      +A  LL  + +    G    L    L  +G    G +  A  +V 
Sbjct: 139 YNTLVNALLGQGRSKEAFSLLEQMAAN---GCPPELITFGLIIKGLCKEGEIEAAFRVVD 195

Query: 69  ---YVDLGFLDDAI----------QCFRLLRKH--YFRIPARGCR-------CLIDRMMR 106
               ++ G   D I          +  R+L  H  + R   RGCR        LID + +
Sbjct: 196 EMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSK 255

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
                  L    ++++ G   +   ++ ++  L K G+++DA +V  +    G    AV+
Sbjct: 256 MAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVT 315

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           +NTLI+G  K + L E   L   M  +G  P V TY+ L +GLC+  R D+A  +L  M 
Sbjct: 316 YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 375

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTILLDGF 285
            RG  PN + +++++DG CK GR+       EA    ++M  + +  P  I Y+ L+DG 
Sbjct: 376 ARGCAPNAITYSSIVDGLCKAGRV------TEALGYFEKMARDEVVAPHVIAYSALIDGL 429

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK G ++ A +  + MI+ G   D V F+ LI+G C  G++     + R M + G  PD 
Sbjct: 430 CKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDM 489

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
            TY  ++D  C+       F L ++MRSDG  P   T   +++GL +  + ++A  + D
Sbjct: 490 VTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQD 548



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 158/291 (54%), Gaps = 12/291 (4%)

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+G CK++ +D+   L   M    + PDV TY ALI+GL K+ R+ +A  L  E   +G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKE 288
             P  V + T+IDG CK GRI+       A  + D+M  + G  P  +TY+ L+DG C++
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIE------NALTLYDDMAIHFGFRPTVVTYSTLIDGLCRD 114

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
            +++    + +EM  RG   + V +  L++     G+  EA  +L +M   G  P+  T+
Sbjct: 115 HEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITF 174

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMR--SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            ++I   CK G+ +  FR++ EM     G  P V T+N++++GLCK  ++ +A+ +    
Sbjct: 175 GLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 234

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           L+ G  P+ +TY+ L++G  K    ++  +L +   E G  ++   Y+++V
Sbjct: 235 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVV 285



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 16/222 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F  ++  Y+T+ H L       +A ++L  + ++ G   +A  ++SI++  G    G V 
Sbjct: 344 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAAR-GCAPNAITYSSIVD--GLCKAGRVT 400

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL       G+ +      ++ R             LID + +         F   ++ 
Sbjct: 401 EAL-------GYFE------KMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIR 447

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P V  F++L++ LC  G+I     +F    +RG     V++ TL++  C+A  +DE
Sbjct: 448 AGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDE 507

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            F L   M   G+ PD  T   +I+GL + NR +DA+ +  E
Sbjct: 508 AFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 181/349 (51%), Gaps = 30/349 (8%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P+ + +NV++  + + G+  DA  VFDE  +R +    +++NT+I+GH K  +L+
Sbjct: 189 DGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLE 248

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
            GF L+  M   G++P+  TY+ L++GLC+  R+ +   LL EM  + + P+   ++ L 
Sbjct: 249 AGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF 308

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DG  +NG                                  G +  A +++  +   GL 
Sbjct: 309 DGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV 368

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P ++ Y  L++G+C+ G+LE A     +M  R I+ D++ + ALI+G C+  ++  A+ +
Sbjct: 369 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 428

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EM   G+ P   T+  +ID + + G  +  F +L EM+ +G  P V +Y +++N  CK
Sbjct: 429 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 488

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441
           +G++  A  +LD M    V+P+   YN +++ + +HG P D   +  EK
Sbjct: 489 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG-PNDQAFILVEK 536



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 191/375 (50%), Gaps = 34/375 (9%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  +++ +G  P+   +NVL+  LC+ G++ +   + DE   + +     +++ L +
Sbjct: 250 GFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 309

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +  +      L      +G+    YT S L+NGLCK+ ++  AE +L  +   GL P
Sbjct: 310 GLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369

Query: 233 NDVIFTTLIDGHCKNGRIDMA----GDMKE-------------------------ARKIV 263
             VI+ TLI+G+C+ G ++ A    G MK                          A+ ++
Sbjct: 370 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 429

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM  NG+NP   T+  L+D + + G LE    +  EM + G++ + V++ ++++ FC+ 
Sbjct: 430 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 489

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           GK+ EA  +L +M    + P+   Y  +ID + ++G     F L+++M+S+G  P++ TY
Sbjct: 490 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 549

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSE 440
           N L+ GLC   Q+  A  +++++ +  ++PD ++YN L+   C  GN +   D  +   +
Sbjct: 550 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 609

Query: 441 KGLVSDYACYTSLVS 455
            G+ S    Y  L+S
Sbjct: 610 YGIKSTVRTYHQLIS 624



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 175/376 (46%), Gaps = 41/376 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + R       L  + + L  G +   Y  ++L++ LCK+GK+  A+ V       G
Sbjct: 307 LFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG 366

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+   L+  F     M+   ++PD  TY+ALINGLCK  R+ +A+
Sbjct: 367 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 426

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM + G+ P    F TLID + + G+++      +   ++ EM  NGL P+ ++Y 
Sbjct: 427 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE------KCFIVLSEMQENGLKPNVVSYG 480

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR----------------------------------- 304
            +++ FCK G +  A+ I  +M  +                                   
Sbjct: 481 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 540

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           GI    V +  LI G C   ++ EAE ++  +    L PD  +Y  +I   C  G+    
Sbjct: 541 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 600

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L + M   G    V TY+ L++GL   G+L     L   M+   VVP +  +NI++E 
Sbjct: 601 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEA 660

Query: 425 HCKHGNPEDFDKLQSE 440
           + K+GN    + L+ E
Sbjct: 661 YSKYGNEIKAEDLRKE 676



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 181/386 (46%), Gaps = 37/386 (9%)

Query: 106 RTNLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           R  LP   L    ++ D   +P  S+   N+L+  L   G+  D +  F      G    
Sbjct: 100 RLRLPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPD 159

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALINGLCKENRLDDAELLL 222
             ++N  +     A +L E   +   M   G  P + ++Y+ +I G+ +  R  DA  + 
Sbjct: 160 TFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVF 219

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDM-----------------------------A 253
            EM ER + PN + + T+IDGH K G ++                              A
Sbjct: 220 DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRA 279

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G M E   ++DEM +  + PD  TY+IL DG  + GD ++ L +  + +K G+ + +   
Sbjct: 280 GRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTC 339

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           + L++G C+ GKV  AE +L+ ++  GL P    Y  +I+ +C+ G+ +  F    +M+S
Sbjct: 340 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 399

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
               P   TYNAL+NGLCK  ++ NA  LL  M D GV P   T+N L++ + + G  E 
Sbjct: 400 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 459

Query: 434 ----FDKLQSEKGLVSDYACYTSLVS 455
                 ++Q E GL  +   Y S+V+
Sbjct: 460 CFIVLSEMQ-ENGLKPNVVSYGSIVN 484



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 154/312 (49%), Gaps = 6/312 (1%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++ + L+  Y   G L+ A   F  ++  + +        LI+ + +    T      +E
Sbjct: 372 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 431

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + D G +P+V  FN L+    + G+++   +V  E  + GL    VS+ +++N  CK   
Sbjct: 432 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 491

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M    + P+   Y+A+I+   +    D A +L+ +M   G++P+ V +  
Sbjct: 492 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 551

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C   +I       EA +I++ +  + L PD ++Y  L+   C  G+++ ALD+++
Sbjct: 552 LIKGLCNQSQI------SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 605

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M K GI+     +  LISG    G+++E E + ++M++  + P +A + ++++ + K G
Sbjct: 606 RMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYG 665

Query: 360 DTKTGFRLLKEM 371
           +      L KEM
Sbjct: 666 NEIKAEDLRKEM 677



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 29/234 (12%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   RT           E+ + G  P+V  +  +++  CK GKI +A  + D+   + 
Sbjct: 447 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 506

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +   A  +N +I+ + +    D+ F L   M+ +G+ P + TY+ LI GLC ++++ +AE
Sbjct: 507 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 566

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK---------------------- 257
            +++ +    L P+ V + TLI   C  G ID A D++                      
Sbjct: 567 EIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 626

Query: 258 -------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                  E   +  +M  N + P    + I+++ + K G+   A D+RKEM+++
Sbjct: 627 GGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 680


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 180/358 (50%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+     N     L    +IL  G+ P    F  L+  LC  GKI +A  VFD+    G
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 156

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++ TL+NG CK + L E   L S M   G+ PD++TY++LI+ LC         
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVT 216

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL+EM +  + PN V    ++D  CK G++       EA  +VD M   G+ PD +TY 
Sbjct: 217 TLLNEMVKSKIMPNVVSLNIVVDALCKEGKV------TEAHDVVDMMIQGGVEPDVVTYA 270

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG C   +++ A+ +   M++ G   + V++  LI+G+C+  ++ +A  +  EM + 
Sbjct: 271 ALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQ 330

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L P+  TY+ +I   C  G  +    L  EM + G +P + TY+ L++ LCK+ +L  A
Sbjct: 331 ELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEA 390

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             LL  +    + PD   YNI ++G C+ G+ E    L S    +GL  D   +  ++
Sbjct: 391 MALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMI 448



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 172/347 (49%), Gaps = 9/347 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T  L  + E++  G SP ++ +N L+H LC   + K    + +E  K  +    VS N +
Sbjct: 178 TEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIV 237

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ++  CK   + E   +  +M   G+ PDV TY+AL++G C  + +D+A  +   M   G 
Sbjct: 238 VDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGC 297

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
             N V + TLI+G+CK  RID      +A  + +EMC   L P+ +TY+ L+ G C  G 
Sbjct: 298 VCNVVSYNTLINGYCKIQRID------KAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGR 351

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           L+ A+ +  EM+  G   + V ++ L+   C+  ++ EA  +L+ +    L PD   Y +
Sbjct: 352 LQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNI 411

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            ID  C+ GD +    L   +   G  P V T+N ++ GLCK G L  A+ L   M + G
Sbjct: 412 AIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENG 471

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            + +  TYN + +G  ++       +L  E   +G  +D +    LV
Sbjct: 472 CLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLV 518



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 177/354 (50%), Gaps = 6/354 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           LDDA+  F  +   +   P      L+  + +    +  L    ++  +G  P VY   +
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 96

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           +++  C   ++  A  V  +  K G      +F TL+ G C    + E   +   M G G
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 156

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            +P+V TY  L+NGLCK+ +L +A  L  EM  +G++P+   + +LI   C         
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCN------LC 210

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           + K    +++EM  + + P+ ++  I++D  CKEG +  A D+   MI+ G+E D V + 
Sbjct: 211 EWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYA 270

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL+ G C   ++ EA ++   M++ G   +  +Y  +I+ +CK         L +EM   
Sbjct: 271 ALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQ 330

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             +P   TY+ L++GLC  G+L++A  L + M+  G +P+ +TY+ILL+  CK+
Sbjct: 331 ELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKN 384



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 136/271 (50%), Gaps = 6/271 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +  LM   C   ++ +A  VFD   + G     VS+NTLING+CK + +D+ 
Sbjct: 261 GVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKA 320

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M    + P+  TYS LI+GLC   RL DA  L +EM   G  PN V ++ L+D 
Sbjct: 321 MYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDY 380

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN R      + EA  ++  +  + L+PD   Y I +DG C+ GDLE+A D+   +  
Sbjct: 381 LCKNHR------LAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAP 434

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG++ D      +I G C+ G + EA ++ REM + G   +  TY  +     +N  T  
Sbjct: 435 RGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSR 494

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
             +LL+EM + G    V T   L+  L   G
Sbjct: 495 AIQLLEEMLARGFSADVSTTALLVKMLSDDG 525



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 131/269 (48%), Gaps = 9/269 (3%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P ++ ++ L+  + K         L  +M   G+ P+    T +I+  C   R+D A   
Sbjct: 54  PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFA--- 110

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                ++ ++   G  PD  T+T L+ G C  G +  ALD+  +M+  G + + V +  L
Sbjct: 111 ---LSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTL 167

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           ++G C+  ++ EA  +  EM+  G+ PD  TY  +I   C   + K    LL EM     
Sbjct: 168 MNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKI 227

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
           +P V + N +++ LCK G++  A+ ++D M+  GV PD +TY  L++GHC     ++  K
Sbjct: 228 MPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVK 287

Query: 437 ---LQSEKGLVSDYACYTSLVSKSSKYRQ 462
              +    G V +   Y +L++   K ++
Sbjct: 288 VFDMMVRNGCVCNVVSYNTLINGYCKIQR 316



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 44/109 (40%)

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           ID M R          +  +   G  P V+  N+++  LCK G + +A  +F E  + G 
Sbjct: 413 IDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGC 472

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
                ++NT+  G  +        +L   M   G   DV T + L+  L
Sbjct: 473 LRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKML 521



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A      ML +   P    +  ++    K     T   L K+M S G  P V T   ++
Sbjct: 39  DALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVI 98

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC---KHGNPED-FDKLQSEKGL 443
           N  C   ++  A  +L  +L LG  PD  T+  L+ G C   K G   D FDK+  E G 
Sbjct: 99  NSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE-GF 157

Query: 444 VSDYACYTSLVSKSSKYRQ 462
             +   Y +L++   K RQ
Sbjct: 158 QPNVVTYGTLMNGLCKDRQ 176


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 163/304 (53%), Gaps = 6/304 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P     N LM  LC +G++K +    D+   +G     VS+ TL+NG CK  
Sbjct: 125 KILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIG 184

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L  ++E    RPDV  YS +I+GLCK+  ++ A     EM  RG+ PN + ++
Sbjct: 185 ETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYS 244

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C      +AG +  A  +++EM    +NP+  TY IL+D  CKEG ++ A  + 
Sbjct: 245 TLIWGFC------LAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLL 298

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  +G   D V + +++ G C+   + +A  +  +M K G++P+  TYT +ID  CK 
Sbjct: 299 AEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKG 358

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  K   +L + +   G    V TYN +++GLCK G    A  +   M D G +P+ +T+
Sbjct: 359 GRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTF 418

Query: 419 NILL 422
           +I++
Sbjct: 419 DIII 422



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 164/332 (49%), Gaps = 9/332 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++   N+L++  C  G++  +  V  +  K G     ++ NTL+ G C    +   
Sbjct: 95  GIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRS 154

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 +   G + +  +Y  L+NGLCK      A  LL  + +R   P+ V+++T+IDG
Sbjct: 155 LHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDG 214

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+  ++ A D         EM   G+ P+ ITY+ L+ GFC  G L  A  +  EMI 
Sbjct: 215 LCKDKIVNQAYDF------FSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMIL 268

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + I  +   +  LI   C+ GKV EA+++L EM   G   D  TY  V+D  CK+ +   
Sbjct: 269 KNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDK 328

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +M+  G  P   TY AL++GLCK G+LKNA  L   +L  G   D  TYN+++ 
Sbjct: 329 ATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMIS 388

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           G CK G    FDK  + K  + D  C  + V+
Sbjct: 389 GLCKEGM---FDKALAMKSKMEDNGCIPNAVT 417



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 164/346 (47%), Gaps = 9/346 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T+  +  +L   ++P +  F  ++  L K      A  +  +   +G+    V+ N LIN
Sbjct: 49  TVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILIN 108

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C    +   F +   +   G +PD  T + L+ GLC +  +  +     ++  +G   
Sbjct: 109 CFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQM 168

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + TL++G CK G    A  +K  R I D        PD + Y+ ++DG CK+  + 
Sbjct: 169 NQVSYGTLLNGLCKIGETRCA--VKLLRMIEDR----STRPDVVMYSTIIDGLCKDKIVN 222

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A D   EM  RGI  + + ++ LI GFC  G+++ A  +L EM+   + P+  TY ++I
Sbjct: 223 QAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILI 282

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D  CK G  K   +LL EM   G    V TYN++++GLCK   L  A  L   M   G+ 
Sbjct: 283 DALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQ 342

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           P+  TY  L++G CK G  ++  KL      KG   D   Y  ++S
Sbjct: 343 PNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMIS 388



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 6/264 (2%)

Query: 78  AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
           A++  R++     R        +ID + +  +      F+ E+   G  P+V  ++ L+ 
Sbjct: 189 AVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIW 248

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197
             C  G++  A  + +E   + ++    ++N LI+  CK   + E  +L + M   G   
Sbjct: 249 GFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPA 308

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           DV TY+++++GLCK   LD A  L  +M + G+ PN   +T LIDG CK GR      +K
Sbjct: 309 DVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGR------LK 362

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
            A+K+   +   G   D  TY +++ G CKEG  + AL ++ +M   G   + V F  +I
Sbjct: 363 NAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIII 422

Query: 318 SGFCRGGKVVEAERMLREMLKVGL 341
                  +  +AE++L  M+  GL
Sbjct: 423 RSLFEKDENDKAEKLLHGMIAKGL 446


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 216/448 (48%), Gaps = 31/448 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+ +L +   +   L+  KMH Q   L  L++S+    +  S F+               
Sbjct: 42  FKPSLQSVPAIARILITAKMHPQIDHLHQLLLSQHRDFAHPSGFS--------------- 86

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT----VTLGFYL 118
             L+    DLG L++AI  FR LR  +   P        + + R +L        +  Y 
Sbjct: 87  --LVRTLADLGLLENAISQFRSLRDRFPHDPPP--ISFYNLLFRCSLKESRVDCVIWLYK 142

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++      P  Y FN+L+  LC+ G +++A+ VFD+  ++G      S   L+ G+C+A 
Sbjct: 143 DMAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAG 202

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
               G  L   M  SG  P+   Y+ +I+ LC E +  +AE L+ +M E GL+P+ V F 
Sbjct: 203 LHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN 262

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTILLDGFCKEGDLESALDI 297
             I   CK+G+I  A  +    +I +EM   GL  P+ +TY ++L+GFC EG  E A  I
Sbjct: 263 CRIAALCKSGQILEASRIFRDMQIDEEM---GLPKPNTVTYNLMLEGFCSEGMFEEARAI 319

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              M K    L   ++   + G  R GK++EA  +L EM +  +KP+  +Y +++   CK
Sbjct: 320 FDSM-KNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCK 378

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G       +L  MR  G  P   TY+ L++G C+ G++  AN +L  M+ +G  P+  T
Sbjct: 379 YGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYT 438

Query: 418 YNILLEGHCKHG---NPEDFDKLQSEKG 442
            NILL    K G     ED  ++ +E+G
Sbjct: 439 CNILLHSLWKEGRASEAEDLLQMMNERG 466



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 31/328 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-A 177
           E+ +    P++Y +N+L+H LCK G   DA+ +     + G+    V+++TL++G+C+  
Sbjct: 356 EMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRG 415

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           K L+  + L+ +++  G  P++YT + L++ L KE R  +AE LL  M ERG   ++V  
Sbjct: 416 KILEANYVLREMIQ-VGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTC 474

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-----------------------PD 274
            T+I+G CK      AG++ +A +IV  M T G                         PD
Sbjct: 475 NTMINGLCK------AGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPD 528

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ITY  ++ G CK G ++ A     EMI + +  D++ F   I  +C+ GK+  A R+L+
Sbjct: 529 SITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLK 588

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM K G      TY  +I            + L+ EM+  G  P V TYN +++ L + G
Sbjct: 589 EMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGG 648

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILL 422
           +LK+A  LLD ML  G+ P+  T+ IL+
Sbjct: 649 KLKDATCLLDEMLQKGISPNIYTFRILI 676



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 29/329 (8%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+  +N+ M  L + GK+ +A ++ +E  ++ +     S+N L++G CK     +   + 
Sbjct: 330 SLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSIL 389

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +M  SG+ PD  TYS L++G C+  ++ +A  +L EM + G  PN      L+    K 
Sbjct: 390 GLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKE 449

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG-- 305
           GR        EA  ++  M   G   D +T   +++G CK G+L+ A++I   M  RG  
Sbjct: 450 GRAS------EAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSA 503

Query: 306 ---------IEL------------DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
                    I+L            D++ +  +I G C+ G+V EA++ L EM+   L PD
Sbjct: 504 SLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPD 563

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
              +   I  +CK G   + FR+LKEM   G   ++ TYN+L+ GL    Q+     L+D
Sbjct: 564 SLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMD 623

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPED 433
            M + G+ P+  TYN ++    + G  +D
Sbjct: 624 EMKERGIFPNVYTYNNIISCLSEGGKLKD 652



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 161/339 (47%), Gaps = 32/339 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P++Y  N+L+H L KEG+  +A+ +     +RG     V+ NT+ING CKA 
Sbjct: 426 EMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAG 485

Query: 179 NLDEGFRLKSVMEGSGMR-----------------------PDVYTYSALINGLCKENRL 215
           NLD+   + S M   G                         PD  TY+ +I GLCK  R+
Sbjct: 486 NLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRV 545

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D+A+  L EM  + L+P+ +IF T I  +CK G+      +  A +++ EM   G N   
Sbjct: 546 DEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGK------LSSAFRVLKEMEKKGCNKSL 599

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+ G   E  +     +  EM +RGI  +   +  +IS    GGK+ +A  +L E
Sbjct: 600 RTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDE 659

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHG 394
           ML+ G+ P+  T+ ++I  F K  D      L +   S  GH  ++  Y+ + N L   G
Sbjct: 660 MLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESL--YSFMFNELLAGG 717

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +   A  L +  LD  +   +  Y  L+E  CK G  +D
Sbjct: 718 ETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDD 756



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 155/357 (43%), Gaps = 37/357 (10%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LLH +  K+G  S A     ++  RG  L  +  + ++      G LD AI+    +   
Sbjct: 442 LLHSLW-KEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTR 500

Query: 89  --------------YFRIPARGCRCLIDRMMRTNLPTVTLGF------------YLEILD 122
                          F I   G +CL D +      T+  G              LE++ 
Sbjct: 501 GSASLGNLGNSFIDLFDIRNNGKKCLPDSI---TYATIIGGLCKVGRVDEAKKKLLEMIG 557

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
              SP   +F+  ++  CK+GK+  A  V  E  K+G + +  ++N+LI G      + E
Sbjct: 558 KKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFE 617

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            + L   M+  G+ P+VYTY+ +I+ L +  +L DA  LL EM ++G++PN   F  LI 
Sbjct: 618 IYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIG 677

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              K       G  +E  +I   +C +     +  Y+ + +     G+   A ++ +  +
Sbjct: 678 AFFKACDF---GAAQELFEIALSLCGH----KESLYSFMFNELLAGGETLKAKELFEAAL 730

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            R + L N  +  LI   C+ GK+ +A  +L +M+      D A++  VID   K G
Sbjct: 731 DRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRG 787



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 11/264 (4%)

Query: 49  ILETRGTHLP--GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
           +LE  G  L    L+ D  +  Y   G L  A +  + + K       R    LI  +  
Sbjct: 552 LLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGS 611

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
            N      G   E+ + G  P+VY +N ++  L + GK+KDA  + DE  ++G+     +
Sbjct: 612 ENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYT 671

Query: 167 FNTLINGHCKAKNLDEGFRLKSV-MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           F  LI    KA +      L  + +   G +  +Y++  + N L        A+ L    
Sbjct: 672 FRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSF--MFNELLAGGETLKAKELFEAA 729

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
            +R L   + ++  LI+  CK+G++D      +A  I+ +M     + D  ++  ++D  
Sbjct: 730 LDRSLALKNFLYRDLIEKLCKDGKLD------DASFILHKMMDKQYSFDPASFMPVIDEL 783

Query: 286 CKEGDLESALDIRKEMIKRGIELD 309
            K G   +A +  + M++   E D
Sbjct: 784 GKRGSKHAADEFAERMMEMASETD 807


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 218/466 (46%), Gaps = 60/466 (12%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           R T+ +++++++ ++   +  +A +         G+G   ++  ++L         LV+ 
Sbjct: 148 RRTVRSFNSVLNVIIQEGLFHRALEFYEC-----GVGGKTNISPNVLSF------NLVIK 196

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           A+      LG +D AI+ FR +              L+D + + +     +    E+   
Sbjct: 197 AM----CKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIE 252

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD-- 181
           G  PS   FNVL++ LCK+G +     + D    +G     V++NT+ING C    LD  
Sbjct: 253 GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 312

Query: 182 ---------------------------------EGFRLKSVMEGSGMRPDVYTYSALING 208
                                            +G  L S +E  G   + Y YS LI+G
Sbjct: 313 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 372

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           L KE + ++A  L  +M E+G  PN V+++ LIDG C+ G++D      EA++I+ EM  
Sbjct: 373 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLD------EAKEILCEMVN 426

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G  P+  TY+ L+ GF K G+ + A+ + KEM K     + + ++ LI G C  GK+ E
Sbjct: 427 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 486

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM---RSDGHLPAVETYNA 385
           A  M   ML  GL+PD   Y+ +I   C  G  + G +L  EM    SD   P V TYN 
Sbjct: 487 AMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQ-PDVVTYNI 545

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           L+  LCK   + +A  LL++MLD G  PD IT NI L    +  NP
Sbjct: 546 LLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNP 591



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 184/341 (53%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I  M +  L    +  + E+      P V+ +  LM  LCKE +I +A ++ DE    G
Sbjct: 194 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 253

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              ++V+FN LING CK  ++    +L   M   G  P+  TY+ +INGLC + +LD A 
Sbjct: 254 CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAV 313

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  M      PNDV + TLI+G  K GR        +   ++  +   G + ++  Y+
Sbjct: 314 SLLDRMVASKCVPNDVTYGTLINGLVKQGR------SVDGVHLLSSLEERGHHANEYAYS 367

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G  KE   E A+ + K+M+++G + + V ++ALI G CR GK+ EA+ +L EM+  
Sbjct: 368 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK 427

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P+  TY+ +I  F K G+++   R+ KEM  +  +P    Y+ L++GLC+ G+L+ A
Sbjct: 428 GCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREA 487

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            M+   ML  G+ PD + Y+ ++ G C  G+ E   KL +E
Sbjct: 488 MMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNE 528



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 3/188 (1%)

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           ++P+ +++ +++   CK G ++ A+++ +EM  +  E D   +  L+ G C+  ++ EA 
Sbjct: 184 ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAV 243

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L EM   G  P   T+ ++I+  CK GD     +L+  M   G +P   TYN ++NGL
Sbjct: 244 LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 303

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDY 447
           C  G+L  A  LLD M+    VP+D+TY  L+ G  K G   D   L S   E+G  ++ 
Sbjct: 304 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 363

Query: 448 ACYTSLVS 455
             Y++L+S
Sbjct: 364 YAYSTLIS 371



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 143/308 (46%), Gaps = 38/308 (12%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           +AYST++  L   +   +A  L   +V +KG   +  +++++++       GL  +    
Sbjct: 364 YAYSTLISGLFKEEKSEEAMGLWKKMV-EKGCQPNIVVYSALID-------GLCRE---- 411

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
                G LD+A +    +        A     LI    +T      +  + E+      P
Sbjct: 412 -----GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 466

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +   ++VL+H LC++GK+++A M++     RGL    V+++++I+G C A +++ G +L 
Sbjct: 467 NEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLF 526

Query: 188 SVM--EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + M  + S  +PDV TY+ L+  LCK+N +  A  LL+ M +RG  P+ +     ++   
Sbjct: 527 NEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL- 585

Query: 246 KNGRIDMAGDMKE-----------------ARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
              +++   D +E                 A KI++ M    L P+  T+  ++   CK 
Sbjct: 586 -REKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKP 644

Query: 289 GDLESALD 296
             +++ +D
Sbjct: 645 KKVQAIID 652



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           K  + P+  ++ +VI   CK G       + +EM      P V TY  LM+GLCK  ++ 
Sbjct: 181 KTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRID 240

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            A +LLD M   G  P  +T+N+L+ G CK G+     KL      KG V +   Y +++
Sbjct: 241 EAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 300

Query: 455 S 455
           +
Sbjct: 301 N 301


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 177/333 (53%), Gaps = 9/333 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y+     +N L+  L K G+       +++    G      ++  L+   C+A+  +E  
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +   M   G  P+V++YS LI GLC+  ++D+A  LL+EM + G  PN V + +L+ G 
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G+      +KEA  +   M   G  PD + Y +L+DGF K+GD+  A  + +EM+++
Sbjct: 133 CKMGK------LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G       + +L+SGF R G+    + + ++ML+ G  P+  T+  ++D FCK GD    
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            RL  EMRS G  P V +YN L+ G+C  G+   A  LL  M+  GV PD ++YNIL++G
Sbjct: 247 HRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDG 306

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + K G  +   KL  E    GL  D   Y++++
Sbjct: 307 YSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 165/315 (52%), Gaps = 6/315 (1%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G Y ++L  G  P+ Y +  L+  LC+  + ++A+ VF     +G      S++ LI G 
Sbjct: 38  GTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGL 97

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C+ + +DE   L + M   G +P+V TY +L++GLCK  +L +A  L   M  RG  P+ 
Sbjct: 98  CRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V++  LIDG  K G      DM EA ++ +EM   G  P   TY  LL GF ++G+    
Sbjct: 158 VVYNVLIDGFSKKG------DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRV 211

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + K+M+++G   +   F  L+ GFC+ G +VEA R+  EM  +G  PD  +Y  +I  
Sbjct: 212 QSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRG 271

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C  G      RLL+EM   G  P + +YN L++G  K G L +A  L   +   G+ PD
Sbjct: 272 MCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 415 DITYNILLEGHCKHG 429
             +Y+ +++  C+ G
Sbjct: 332 AFSYSTIIDCLCRAG 346



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 172/332 (51%), Gaps = 11/332 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G+ P+V  +  L+  LCK GK+K+A  +F     RG     V +N LI+G  K  
Sbjct: 112 EMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++ E +RL   M   G  P V+TY++L++G  ++      + L  +M  +G  PN   F 
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG CK       GDM EA ++  EM + G  PD ++Y  L+ G C +G    A  + 
Sbjct: 232 NLLDGFCK------MGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLL 285

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EMI+ G+  D V++  LI G+ + G +  A ++  E+ K GL+PD  +Y+ +IDC C+ 
Sbjct: 286 REMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRA 345

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G     F + K+M ++G  P       L+ GLC+  +L  +  L   M+    VP    Y
Sbjct: 346 GKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEY 405

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           N+L+   CK    +D    F +L +E+G   D
Sbjct: 406 NLLMYKLCKAKRSDDVCEIFHEL-TERGFSPD 436



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 163/345 (47%), Gaps = 21/345 (6%)

Query: 54  GTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMM 105
           G H P +V   +L+     +G L +A+  F        R+  RGC         LID   
Sbjct: 116 GGHQPNVVTYGSLLSGLCKMGKLKEAVDLFS-------RMVYRGCPPDGVVYNVLIDGFS 168

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           +          + E+L+ G  P+V+ +N L+    ++G+    Q +F +  ++G      
Sbjct: 169 KKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIF 228

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +FN L++G CK  ++ E  RL   M   G  PDV +Y+ LI G+C + +  +A+ LL EM
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREM 288

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G+ P+ V +  LIDG+ K+G +D       A K+  E+  +GL PD  +Y+ ++D  
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALD------HAIKLFYEIPKSGLEPDAFSYSTIIDCL 342

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C+ G + +A  + K+MI  G   D      L+ G CRG ++ E+  + + M+K    P  
Sbjct: 343 CRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLI 402

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             Y +++   CK   +     +  E+   G  P VE    ++  L
Sbjct: 403 PEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 6/245 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++L  G  P+++ FN L+   CK G + +A  +F E    G     VS+NTLI G C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMC 273

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                 E  RL   M  SG+ PD+ +Y+ LI+G  K   LD A  L +E+ + GL P+  
Sbjct: 274 SKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            ++T+ID  C+      AG +  A  +  +M  NG  PD      L+ G C+   L  + 
Sbjct: 334 SYSTIIDCLCR------AGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESC 387

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ + M+K         +  L+   C+  +  +   +  E+ + G  PD     ++++  
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447

Query: 356 CKNGD 360
            ++ D
Sbjct: 448 RRSDD 452



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 60/151 (39%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y   G LD AI+ F  + K      A     +ID + R          + +++  G +P 
Sbjct: 307 YSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPD 366

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
             V   L+  LC+  ++ ++  +F    K         +N L+   CKAK  D+   +  
Sbjct: 367 AAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFH 426

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            +   G  PDV     ++  L + +  D AE
Sbjct: 427 ELTERGFSPDVEISKVILETLRRSDDKDAAE 457


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 189/366 (51%), Gaps = 12/366 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R +   + L    +++ +GY P V   + L++  C+  ++ DA  +  +  + G
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V +NT+I+G CK   +++   L   ME  G+R D  TY++L+ GLC   R  DA 
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ +M  R + PN + FT +ID   K G+        EA K+ +EM    ++PD  TY 
Sbjct: 230 RLMRDMVMRDIVPNVITFTAVIDVFVKEGK------FSEAMKLYEEMTRRCVDPDVFTYN 283

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G C  G ++ A  +   M+ +G   D V +  LI+GFC+  +V E  ++ REM + 
Sbjct: 284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL  D  TY  +I  + + G       +   M S    P + TY+ L+ GLC + +++ A
Sbjct: 344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKA 400

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQSE--KGLVSDYACYTSLVSK 456
            +L + M    +  D  TYNI++ G CK GN ED +D  +S   KGL  D   YT+++S 
Sbjct: 401 LVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 460

Query: 457 SSKYRQ 462
             + RQ
Sbjct: 461 FCRKRQ 466



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 165/296 (55%), Gaps = 9/296 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V F+ +++   K+KN D    L   ME  G+  D+Y+Y+ +IN LC+ +R   A  ++
Sbjct: 68  SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 127

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M + G  P+ V  ++LI+G C+  R+  A D+      V +M   G  PD + Y  ++
Sbjct: 128 GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL------VSKMEEMGFRPDVVIYNTII 181

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK G +  A+++   M + G+  D V + +L++G C  G+  +A R++R+M+   + 
Sbjct: 182 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIV 241

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  T+T VID F K G      +L +EM      P V TYN+L+NGLC HG++  A  +
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           LD M+  G +PD +TYN L+ G CK    ++  KL    +++GLV D   Y +++ 
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 357



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 162/321 (50%), Gaps = 10/321 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F+ ++ K+ K         +F      G+     S+N +IN  C+         +
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PDV T S+LING C+ NR+ DA  L+ +M E G  P+ VI+ T+IDG CK
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G ++      +A ++ D M  +G+  D +TY  L+ G C  G    A  + ++M+ R I
Sbjct: 187 IGLVN------DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 240

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + + FTA+I  F + GK  EA ++  EM +  + PD  TY  +I+  C +G      +
Sbjct: 241 VPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 300

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L  M + G LP V TYN L+NG CK  ++     L   M   G+V D ITYN +++G+ 
Sbjct: 301 MLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360

Query: 427 KHGNP----EDFDKLQSEKGL 443
           + G P    E F ++ S   +
Sbjct: 361 QAGRPDAAQEIFSRMDSRPNI 381



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 46/328 (14%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC------ 175
           + G+ P V ++N ++   CK G + DA  +FD   + G+ A AV++N+L+ G C      
Sbjct: 167 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWS 226

Query: 176 -----------------------------KAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
                                        K     E  +L   M    + PDV+TY++LI
Sbjct: 227 DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 286

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           NGLC   R+D+A+ +L  M  +G  P+ V + TLI+G CK+ R+D      E  K+  EM
Sbjct: 287 NGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVD------EGTKLFREM 340

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGK 325
              GL  D ITY  ++ G+ + G  ++A +I   M  R     N+  ++ L+ G C   +
Sbjct: 341 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR----PNIRTYSILLYGLCMNWR 396

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V +A  +   M K  ++ D  TY +VI   CK G+ +  + L + +   G  P V +Y  
Sbjct: 397 VEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTT 456

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVP 413
           +++G C+  Q   +++L   M + G++P
Sbjct: 457 MISGFCRKRQWDKSDLLYRKMQEDGLLP 484


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 218/466 (46%), Gaps = 60/466 (12%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           R T+ +++++++ ++   +  +A +         G+G   ++  ++L         LV+ 
Sbjct: 132 RRTVRSFNSVLNVIIQEGLFHRALEFYEC-----GVGGKTNISPNVLSF------NLVIK 180

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           A+      LG +D AI+ FR +              L+D + + +     +    E+   
Sbjct: 181 AM----CKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIE 236

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD-- 181
           G  PS   FNVL++ LCK+G +     + D    +G     V++NT+ING C    LD  
Sbjct: 237 GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 296

Query: 182 ---------------------------------EGFRLKSVMEGSGMRPDVYTYSALING 208
                                            +G  L S +E  G   + Y YS LI+G
Sbjct: 297 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 356

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           L KE + ++A  L  +M E+G  PN V+++ LIDG C+ G++D      EA++I+ EM  
Sbjct: 357 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLD------EAKEILCEMVN 410

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G  P+  TY+ L+ GF K G+ + A+ + KEM K     + + ++ LI G C  GK+ E
Sbjct: 411 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 470

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM---RSDGHLPAVETYNA 385
           A  M   ML  GL+PD   Y+ +I   C  G  + G +L  EM    SD   P V TYN 
Sbjct: 471 AMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQ-PDVVTYNI 529

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           L+  LCK   + +A  LL++MLD G  PD IT NI L    +  NP
Sbjct: 530 LLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNP 575



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 184/341 (53%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I  M +  L    +  + E+      P V+ +  LM  LCKE +I +A ++ DE    G
Sbjct: 178 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 237

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              ++V+FN LING CK  ++    +L   M   G  P+  TY+ +INGLC + +LD A 
Sbjct: 238 CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAV 297

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  M      PNDV + TLI+G  K GR        +   ++  +   G + ++  Y+
Sbjct: 298 SLLDRMVASKCVPNDVTYGTLINGLVKQGR------SVDGVHLLSSLEERGHHANEYAYS 351

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G  KE   E A+ + K+M+++G + + V ++ALI G CR GK+ EA+ +L EM+  
Sbjct: 352 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK 411

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P+  TY+ +I  F K G+++   R+ KEM  +  +P    Y+ L++GLC+ G+L+ A
Sbjct: 412 GCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREA 471

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            M+   ML  G+ PD + Y+ ++ G C  G+ E   KL +E
Sbjct: 472 MMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNE 512



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 3/188 (1%)

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           ++P+ +++ +++   CK G ++ A+++ +EM  +  E D   +  L+ G C+  ++ EA 
Sbjct: 168 ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAV 227

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L EM   G  P   T+ ++I+  CK GD     +L+  M   G +P   TYN ++NGL
Sbjct: 228 LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 287

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDY 447
           C  G+L  A  LLD M+    VP+D+TY  L+ G  K G   D   L S   E+G  ++ 
Sbjct: 288 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 347

Query: 448 ACYTSLVS 455
             Y++L+S
Sbjct: 348 YAYSTLIS 355



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 143/308 (46%), Gaps = 38/308 (12%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           +AYST++  L   +   +A  L   +V +KG   +  +++++++       GL  +    
Sbjct: 348 YAYSTLISGLFKEEKSEEAMGLWKKMV-EKGCQPNIVVYSALID-------GLCRE---- 395

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
                G LD+A +    +        A     LI    +T      +  + E+      P
Sbjct: 396 -----GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 450

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +   ++VL+H LC++GK+++A M++     RGL    V+++++I+G C A +++ G +L 
Sbjct: 451 NEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLF 510

Query: 188 SVM--EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + M  + S  +PDV TY+ L+  LCK+N +  A  LL+ M +RG  P+ +     ++   
Sbjct: 511 NEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL- 569

Query: 246 KNGRIDMAGDMKE-----------------ARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
              +++   D +E                 A KI++ M    L P+  T+  ++   CK 
Sbjct: 570 -REKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKP 628

Query: 289 GDLESALD 296
             +++ +D
Sbjct: 629 KKVQAIID 636



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           K  + P+  ++ +VI   CK G       + +EM      P V TY  LM+GLCK  ++ 
Sbjct: 165 KTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRID 224

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            A +LLD M   G  P  +T+N+L+ G CK G+     KL      KG V +   Y +++
Sbjct: 225 EAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 284

Query: 455 S 455
           +
Sbjct: 285 N 285


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 194/383 (50%), Gaps = 10/383 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D+A+  F  ++        R    LI  +  +   +  L    E+ + G  P+++ + V
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+  LC + K + A+ +  +  ++GL    +++N LING+CK   +++   +  +ME   
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + P+  TY+ LI G CK N +  A  +L++M ER + P+ V + +LIDG C++G  D   
Sbjct: 424 LSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFD--- 479

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
               A +++  M   GL PD+ TYT ++D  CK   +E A D+   + ++G+  + V +T
Sbjct: 480 ---SAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYT 536

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI G+C+ GKV EA  ML +ML     P+  T+  +I   C +G  K    L ++M   
Sbjct: 537 ALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI 596

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NP 431
           G  P V T   L++ L K G   +A      ML  G  PD  TY   ++ +C+ G   + 
Sbjct: 597 GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDA 656

Query: 432 EDFDKLQSEKGLVSDYACYTSLV 454
           ED      E G+  D   Y+SL+
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSLI 679



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 174/307 (56%), Gaps = 7/307 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L+ G  P+V  +N L++  CK G I+DA  V +    R L     ++N LI G+CK+ 
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS- 441

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ +   + + M    + PDV TY++LI+G C+    D A  LL  M +RGL P+   +T
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYT 501

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++ID  CK+ R++ A D+       D +   G+NP+ + YT L+DG+CK G ++ A  + 
Sbjct: 502 SMIDSLCKSKRVEEACDL------FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+ +    +++ F ALI G C  GK+ EA  +  +M+K+GL+P  +T T++I    K+
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD    +   ++M S G  P   TY   +   C+ G+L +A  ++  M + GV PD  TY
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675

Query: 419 NILLEGH 425
           + L++G+
Sbjct: 676 SSLIKGY 682



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 228/478 (47%), Gaps = 46/478 (9%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           +H Y+ ++  L +     +AR+LL  ++ K  M +                  +  +AL+
Sbjct: 358 IHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV-----------------ITYNALI 400

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y   G ++DA+    L+         R    LI    ++N+    +G   ++L+    
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK-AMGVLNKMLERKVL 459

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N L+   C+ G    A  +      RGL     ++ ++I+  CK+K ++E   L
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +E  G+ P+V  Y+ALI+G CK  ++D+A L+L +M  +   PN + F  LI G C 
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G+      +KEA  + ++M   GL P   T TIL+    K+GD + A    ++M+  G 
Sbjct: 580 DGK------LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGT 633

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D   +T  I  +CR G++++AE M+ +M + G+ PD  TY+ +I  +   G T   F 
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFD 693

Query: 367 LLKEMRSDGHLPAVETYNALMNGLC--KHGQLKN--------ANM--------LLDTMLD 408
           +LK MR  G  P+  T+ +L+  L   K+G+ K         +NM        LL+ M++
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVE 753

Query: 409 LGVVPDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
             V P+  +Y  L+ G C+ GN     + FD +Q  +G+      + +L+S   K ++
Sbjct: 754 HSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKK 811



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 176/346 (50%), Gaps = 42/346 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I++ G  P  + +  L+   C+   +  A  VF+E   +G     V++  LI+G C A+
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR 302

Query: 179 NLDEGFRL--------------------KSV---------------MEGSGMRPDVYTYS 203
            +DE   L                    KS+               ME +G++P+++TY+
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+ LC + + + A  LL +M E+GL PN + +  LI+G+CK G I+ A D      +V
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD------VV 416

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           + M +  L+P+  TY  L+ G+CK  ++  A+ +  +M++R +  D V + +LI G CR 
Sbjct: 417 ELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G    A R+L  M   GL PD  TYT +ID  CK+   +    L   +   G  P V  Y
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            AL++G CK G++  A+++L+ ML    +P+ +T+N L+ G C  G
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 218/442 (49%), Gaps = 21/442 (4%)

Query: 26  ARDLLHLIVSKKGMGSSASLFASILETR-GTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84
           A +  H I        S   +AS+L         G+V    +++      + DA+    L
Sbjct: 106 ALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDL 165

Query: 85  LRK----HYFRIPAR---GC-RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
            RK      F +  +   GC   L++ + R  L       Y+E+L+    P++Y +N ++
Sbjct: 166 CRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMV 225

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
           +  CK G +++A     +  + GL     ++ +LI G+C+ K+LD  F++ + M   G R
Sbjct: 226 NGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCR 285

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
            +   Y+ LI+GLC   R+D+A  L  +M +    P    +T LI   C + R       
Sbjct: 286 RNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER------K 339

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            EA  +V EM   G+ P+  TYT+L+D  C +   E A ++  +M+++G+  + + + AL
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL 399

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G+C+ G + +A  ++  M    L P+  TY  +I  +CK+ +      +L +M     
Sbjct: 400 INGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKV 458

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--- 433
           LP V TYN+L++G C+ G   +A  LL  M D G+VPD  TY  +++  CK    E+   
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518

Query: 434 -FDKLQSEKGLVSDYACYTSLV 454
            FD L+ +KG+  +   YT+L+
Sbjct: 519 LFDSLE-QKGVNPNVVMYTALI 539



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 185/347 (53%), Gaps = 10/347 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E  +  Y   +  +N L++ L + G + + + V+ E  +  +     ++N ++NG+CK  
Sbjct: 173 ERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLG 232

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N++E  +  S +  +G+ PD +TY++LI G C+   LD A  + +EM  +G   N+V +T
Sbjct: 233 NVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYT 292

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G C   RID A D+    K+ D+ C     P   TYT+L+   C       AL++ 
Sbjct: 293 HLIHGLCVARRIDEAMDL--FVKMKDDECF----PTVRTYTVLIKSLCGSERKSEALNLV 346

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM + GI+ +   +T LI   C   K  +A  +L +ML+ GL P+  TY  +I+ +CK 
Sbjct: 347 KEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKR 406

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    +++ M S    P   TYN L+ G CK   +  A  +L+ ML+  V+PD +TY
Sbjct: 407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTY 465

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYRQ 462
           N L++G C+ GN +   +L S   ++GLV D   YTS++    K ++
Sbjct: 466 NSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 161/330 (48%), Gaps = 25/330 (7%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   FN L+H LC +GK+K+A ++ ++  K GL  T  +   LI+   K  + D  +  
Sbjct: 565 PNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSR 624

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  SG +PD +TY+  I   C+E RL DAE ++ +M E G++P+   +++LI G+  
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD---------------GFCKEGDL 291
            G+ + A D      ++  M   G  P + T+  L+                  C   ++
Sbjct: 685 LGQTNFAFD------VLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNM 738

Query: 292 ---ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK-VGLKPDDAT 347
              ++ +++ ++M++  +  +  ++  LI G C  G +  AE++   M +  G+ P +  
Sbjct: 739 MEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELV 798

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           +  ++ C CK        +++ +M   GHLP +E+   L+ GL K G+ +    +   +L
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLL 858

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             G   D++ + I+++G  K G  E F +L
Sbjct: 859 QCGYYEDELAWKIIIDGVGKQGLVEAFYEL 888



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 119/285 (41%), Gaps = 48/285 (16%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++L  G  P  + +   +   C+EG++ DA+ +  +  + G+     ++++LI G+  
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----ENRLDDAEL------------ 220
               +  F +   M  +G  P  +T+ +LI  L +    + +  + EL            
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTV 744

Query: 221 --LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM---------------------- 256
             LL +M E  +TPN   +  LI G C+ G + +A  +                      
Sbjct: 745 VELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLS 804

Query: 257 --------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                    EA K+VD+M   G  P   +  +L+ G  K+G+ E    + + +++ G   
Sbjct: 805 CCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYE 864

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           D +A+  +I G  + G V     +   M K G K    TY+++I+
Sbjct: 865 DELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 223/449 (49%), Gaps = 16/449 (3%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSAS-LFASILETRGTHLPGLVL 62
           +L  H +  ++   ++    SQ+  ++  I+ +  M +    L   +L +         L
Sbjct: 19  KLAWHLFKRILSLPISSNHRSQSIPIISRILIRSKMFNELDDLHQLLLNSPSLESSDSSL 78

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-----RCLIDRMMRTNLPTVTLGFY 117
           + L+ V    GF + AI  F+ LR ++   P +         L+   +R N   +    Y
Sbjct: 79  ENLVTVLAKSGFFNKAISHFKSLRSNF---PEKQPSIYLYNVLLKSCIRENRVELVSWLY 135

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            +++    SP  Y FN+L+  LC  G ++DA+ +FD+   RG      +F  L+ G+C+A
Sbjct: 136 KDMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRA 195

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
               +G  L   M   G+ P+   Y+ LI+  CKE +  DAE L+ +M E GL P+   F
Sbjct: 196 GLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETF 255

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTILLDGFCKEGDLESALD 296
            + I   C +G+I  A  +    +I +E+   GL +P+ ITY ++L GFCKEG LE A  
Sbjct: 256 NSRISALCGSGKILEASRIFRDMQIDEEL---GLPHPNVITYKLMLMGFCKEGMLEEAKT 312

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +   M +    ++  ++   + G  R GK++EA  +L+EML +G++PD  +Y +V+D  C
Sbjct: 313 LVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLC 372

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           KNG       L+  M  +G LP   TY+ L++G C  G++  AN LL  M+     P+  
Sbjct: 373 KNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTY 432

Query: 417 TYNILLEGHCKHGNPEDFDKL---QSEKG 442
           T N+LL    K G   + + L    +EKG
Sbjct: 433 TCNVLLHSLWKEGRISEAENLLQKMNEKG 461



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 178/383 (46%), Gaps = 55/383 (14%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  + +++   CKEG +++A+ + D   +        S+N  + G  +   L E + +
Sbjct: 289 PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIV 348

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M G G+ PD+Y+Y+ +++GLCK   L DA +L+  M   G+ P+ V ++TL+ G+C 
Sbjct: 349 LKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCS 408

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
            G++  A                             G + EA  ++ +M   G   D +T
Sbjct: 409 KGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVT 468

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIEL-----------------------DNVAFT 314
             I+++  C  G L+ A++I   M   G                          D V ++
Sbjct: 469 CNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYS 528

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            +ISG C+ G++ +A++   EM+  GL+PD A Y   I  FC+ G   + F++LK+M   
Sbjct: 529 TIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKR 588

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G    ++TYN+L+ GL    Q+     L+D M + GV PD  TYN +L   C+ G   D 
Sbjct: 589 GCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDA 648

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
             +  E   KG+  + + +  L+
Sbjct: 649 PSVLDEMLQKGISPNISSFRILI 671



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 64/349 (18%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P +Y +N++M  LCK G + DA+M+     + G+    V+++TL++G+C   
Sbjct: 351 EMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKG 410

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE------------------- 219
            + E   L   M  +   P+ YT + L++ L KE R+ +AE                   
Sbjct: 411 KVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCN 470

Query: 220 LLLHEMCERG---------------------------------------LTPNDVIFTTL 240
           ++++ +C  G                                        TP+ V ++T+
Sbjct: 471 IIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTI 530

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G CK GR+D      +A+K   EM + GL PD   Y   +  FC+EG + SA  + K+
Sbjct: 531 ISGLCKAGRLD------DAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKD 584

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M KRG       + +LI G     ++ E   ++ EM + G+ PD  TY  +++C C+ G 
Sbjct: 585 MEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGR 644

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
                 +L EM   G  P + ++  L+   CK    K ++ + +  L++
Sbjct: 645 INDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEVFEIALNV 693



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 169/376 (44%), Gaps = 63/376 (16%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++    SP+ Y  NVL+H L KEG+I +A+ +  +  ++G     V+ N +IN  C   
Sbjct: 421 EMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNG 480

Query: 179 NLDEGFRLKSVM-----------------------EGSGMRPDVYTYSALINGLCKENRL 215
            LD+   + + M                        G    PD+ TYS +I+GLCK  RL
Sbjct: 481 QLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRL 540

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           DDA+    EM  +GL P+  I+ T I   C+ G+I        A +++ +M   G N   
Sbjct: 541 DDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKIS------SAFQVLKDMEKRGCNKTL 594

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+ G   +  +     +  EM ++G+  D   +  +++  C GG++ +A  +L E
Sbjct: 595 QTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDE 654

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK-EMRSDGHLPAVET------------ 382
           ML+ G+ P+ +++ ++I  FCK  D K    + +  +   GH  A+ T            
Sbjct: 655 MLQKGISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGGKV 714

Query: 383 ---------------------YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                                Y  L++ LCK  +L+ A+ +L  ++D G   D  ++  +
Sbjct: 715 AEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPV 774

Query: 422 LEGHCKHGNPEDFDKL 437
           ++G  K GN    D+L
Sbjct: 775 IDGFGKMGNKHVADEL 790



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 7/255 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           ++E++  G  P   +++  +H  C+EGKI  A  V  +  KRG + T  ++N+LI G   
Sbjct: 547 FIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGS 606

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + E + L   M   G+ PDV TY+ ++N LC+  R++DA  +L EM ++G++PN   
Sbjct: 607 KNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISS 666

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F  LI   CK      A D K + ++  E+  N     +  YT++ +     G +  A +
Sbjct: 667 FRILIKAFCK------ACDFKASHEVF-EIALNVCGHKEALYTLMFNELLVGGKVAEAKE 719

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +  + R  ++ N  +  LI   C+  K+  A  +L  ++  G + D A++  VID F 
Sbjct: 720 LFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFG 779

Query: 357 KNGDTKTGFRLLKEM 371
           K G+      L + M
Sbjct: 780 KMGNKHVADELAERM 794



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 111/257 (43%), Gaps = 9/257 (3%)

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           ++G      + D  +  +   G +  A Q  + + K       +    LI  +   N   
Sbjct: 552 SKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIF 611

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
              G   E+ + G SP V  +N +++ LC+ G+I DA  V DE  ++G+     SF  LI
Sbjct: 612 ELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILI 671

Query: 172 NGHCKAKNLDEGFRLKSV-MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              CKA +      +  + +   G +  +YT   + N L    ++ +A+ L     +R  
Sbjct: 672 KAFCKACDFKASHEVFEIALNVCGHKEALYTL--MFNELLVGGKVAEAKELFETALDRSF 729

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
              + ++  LID  CK+ +++ A D      ++  +   G   D  ++  ++DGF K G+
Sbjct: 730 DIGNFLYKDLIDRLCKDEKLEAASD------VLHRLIDKGYQFDPASFMPVIDGFGKMGN 783

Query: 291 LESALDIRKEMIKRGIE 307
              A ++ + M++   E
Sbjct: 784 KHVADELAERMMEMASE 800


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 204/421 (48%), Gaps = 32/421 (7%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           +GS+  LF   +E  G     +    L+  +   G ++ A++ ++ +             
Sbjct: 354 LGSALDLFYK-MENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVH 412

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            +I   ++       L  + E  + G + +V++ N ++  LCK+GKI  A  +  +   R
Sbjct: 413 TIIQGWLKGQKHEEALKLFDESFETGLA-NVFICNTILSWLCKQGKIDKATELLRKMESR 471

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+    VS+N ++  HC+ KN+D    + S M   G++P+ YTYS LI+G  K +   + 
Sbjct: 472 GIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNV 531

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------- 253
             ++++M    +  N V++ T+I+G CK G+   A                         
Sbjct: 532 LEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIID 591

Query: 254 -----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                G+M  A    +EMC NG++P+ ITYT L+DG CK   ++ AL++R EM  +G++L
Sbjct: 592 GFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKL 651

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D  A+ ALI GFC+   +  A  +  E+L+ GL P    Y  +I  F   G+      L 
Sbjct: 652 DIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLY 711

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           K+M  DG    + TY  L++GL K G L  A+ L   M  +G+VPD+I Y +++ G  K 
Sbjct: 712 KKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKK 771

Query: 429 G 429
           G
Sbjct: 772 G 772



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 183/353 (51%), Gaps = 11/353 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  +L+ G  P+ Y +++L+    K    ++   V ++     +    V + T+ING CK
Sbjct: 500 FSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCK 559

Query: 177 AKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                +   L  +++E         +Y+++I+G  KE  +D A     EMC  G++PN +
Sbjct: 560 VGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVI 619

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T+L+DG CKN R+D A +M+      DEM   G+  D   Y  L+ GFCK+ ++ESA 
Sbjct: 620 TYTSLMDGLCKNNRMDQALEMR------DEMKNKGVKLDIPAYGALIHGFCKKSNMESAS 673

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  E+++ G+      + +LISGF   G +V A  + ++MLK GL+ D  TYT +ID  
Sbjct: 674 ALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGL 733

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K G+      L  EM++ G +P    Y  ++NGL K GQ      + + M    V P+ 
Sbjct: 734 LKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNV 793

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS-KSSKYRQKR 464
           + YN ++ GH + GN ++  +L  E   KG++ D A +  LVS K  K++  R
Sbjct: 794 LIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGKVGKFQPIR 846



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 192/434 (44%), Gaps = 21/434 (4%)

Query: 10  YSTMVHFLV-AHKMHSQARDLLHLIVSKKGMGSSASLFASIL----ETRGTHLPGLVLDA 64
           +  ++H LV + + + +A DLL   VS       AS+  S L    +  G  +     + 
Sbjct: 108 FWVLIHILVTSPETYGRASDLLIRYVSTSNPTPMASVLVSNLVDSAKLFGFEVNSRAFNY 167

Query: 65  LMIVYVDLGFLDDAI----QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           L+  Y      D A+    Q   L    +     R    L+ R    N  T     Y  +
Sbjct: 168 LLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQR----NSITEAKELYSRM 223

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +  G         +LM    +E K  +A  VF    +RG    ++ ++  +   CK  NL
Sbjct: 224 VAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNL 283

Query: 181 DEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                L + + E     P   TY+++I    K+  ++DA     EM   G++ N V  T+
Sbjct: 284 AMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATS 343

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI GHCKN       D+  A  +  +M   G +P+ +T+++L++ F K G++E AL+  K
Sbjct: 344 LITGHCKNN------DLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYK 397

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M   G+         +I G+ +G K  EA ++  E  + GL  +      ++   CK G
Sbjct: 398 KMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA-NVFICNTILSWLCKQG 456

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  LL++M S G  P V +YN +M   C+   +  A  +   ML+ G+ P++ TY+
Sbjct: 457 KIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYS 516

Query: 420 ILLEGHCKHGNPED 433
           IL++G  K+ + ++
Sbjct: 517 ILIDGCFKNHDEQN 530



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 166/369 (44%), Gaps = 11/369 (2%)

Query: 90  FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
           F + +R    L++   +       +    ++L+ G  P V   N  +  L +   I +A+
Sbjct: 158 FEVNSRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAK 217

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            ++      G+     +   L+    + +   E   + S     G  PD   YS  +   
Sbjct: 218 ELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQAC 277

Query: 210 CKENRLDDAELLLHEMCERGL-TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           CK   L  A  LL EM E+ L  P+   +T++I    K       G+M++A +  DEM +
Sbjct: 278 CKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQ------GNMEDAIRWKDEMVS 331

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +G++ + +  T L+ G CK  DL SALD+  +M   G   ++V F+ LI  F + G++ +
Sbjct: 332 DGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEK 391

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A    ++M  +GL P       +I  + K    +   +L  E    G L  V   N +++
Sbjct: 392 ALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETG-LANVFICNTILS 450

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVS 445
            LCK G++  A  LL  M   G+ P+ ++YN ++  HC+  N +    + S   EKGL  
Sbjct: 451 WLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKP 510

Query: 446 DYACYTSLV 454
           +   Y+ L+
Sbjct: 511 NNYTYSILI 519



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 22/310 (7%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y T+++ L      S+AR+LL  ++ +K    S   + SI++                 +
Sbjct: 550 YQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDG----------------F 593

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           +  G +D A+  +  +  +           L+D + + N     L    E+ + G    +
Sbjct: 594 IKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDI 653

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             +  L+H  CK+  ++ A  +F E  + GL+ +   +N+LI+G     N+     L   
Sbjct: 654 PAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKK 713

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+R D+ TY+ LI+GL KE  L  A  L  EM   GL P+++++T +++G  K G+
Sbjct: 714 MLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQ 773

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +  K+ +EM  N + P+ + Y  ++ G  +EG+L+ A  +  EM+ +GI  D
Sbjct: 774 F------VKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPD 827

Query: 310 NVAFTALISG 319
              F  L+SG
Sbjct: 828 GATFDILVSG 837



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 41/238 (17%)

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI--------------- 306
           +VD     G   +   +  LL+ + K+   + A+DI  +M++ G+               
Sbjct: 149 LVDSAKLFGFEVNSRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALV 208

Query: 307 ---------EL-----------DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
                    EL           DN     L+    R  K  EA  +    ++ G +PD  
Sbjct: 209 QRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSL 268

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGH-LPAVETYNALMNGLCKHGQLKNANMLLDT 405
            Y++ +   CK  +      LL+EM+     +P+ ETY +++    K G +++A    D 
Sbjct: 269 LYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDE 328

Query: 406 MLDLGVVPDDITYNILLEGHCKH---GNPED-FDKLQSEKGLVSDYACYTSLVSKSSK 459
           M+  G+  + +    L+ GHCK+   G+  D F K+++E G   +   ++ L+ + SK
Sbjct: 329 MVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENE-GPSPNSVTFSVLIERFSK 385


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 183/351 (52%), Gaps = 13/351 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E++     P+V  +  ++  LCK G+ KDA  + DE   +G      ++N ++ G C
Sbjct: 67  FLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLC 126

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           + + LDE  ++   M   G  PDV TY++ I GLCK +R+D+A   L  M    +TP+ V
Sbjct: 127 EERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVV 183

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +TT+I+G CK      +GD+  A +++D+M   G  PD +TY+ L+DGFCK G++E A+
Sbjct: 184 SYTTVINGLCK------SGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   M+K G   + VA+ +L+    R G + +AE ML EM + G  PD  +Y   ID  
Sbjct: 238 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK    K    +   M   G  P   +Y+ L+  LCK  +L +A  L++   +   + D 
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDI 357

Query: 416 ITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           + Y +LL+G CK G  ++    F K+  EK    D   Y  ++    K RQ
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQ 408



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 176/336 (52%), Gaps = 12/336 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P   ++N L+    K      A     E  K     T V++  +++G CKA    
Sbjct: 38  EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTK 97

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  +L   M   G  P++YTY+ ++ GLC+E +LD+A+ +L EM  RG  P+ V + + I
Sbjct: 98  DAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFI 157

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G CK  R+D      EARK +  M    + PD ++YT +++G CK GDL+SA  +  +M
Sbjct: 158 KGLCKCDRVD------EARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQM 208

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RG   D V +++LI GFC+GG+V  A  +L  MLK+G +P+   Y  ++    + G  
Sbjct: 209 TNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHI 268

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                +L EM   G  P V +YNA ++GLCK  ++K A  + D M++ G  P+  +Y++L
Sbjct: 269 GKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 328

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +E  CK    +D   L     EK  + D   YT L+
Sbjct: 329 VEELCKKKELDDAITLVEQAREKYQIVDILLYTVLL 364



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 168/332 (50%), Gaps = 15/332 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       +G    +L  G  P++  +N L+  L + G I  A+ +  E  +RG
Sbjct: 223 LIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRG 282

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                VS+N  I+G CKA+ + +   +   M   G  P+  +YS L+  LCK+  LDDA 
Sbjct: 283 FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAI 342

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE-MCTNGLNPDKITY 278
            L+ +  E+    + +++T L+DG CK GR D A  +    K++DE +C     PD   Y
Sbjct: 343 TLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACAL--FSKVLDEKIC----EPDVFFY 396

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            ++LD  CK   ++ AL I K+M++R    + V +  L+ G C   ++ +AE ML  M+ 
Sbjct: 397 NVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVD 455

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G  PD  TY  ++D  CK G +     L +E    G +P V TY+AL+ GL  H  +  
Sbjct: 456 EGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLV-HENMAE 514

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
              LL T LD+ +      +N ++ G+ ++G+
Sbjct: 515 EAYLLFTKLDVAL------WNAMILGYAENGS 540



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 101/194 (52%), Gaps = 4/194 (2%)

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++D+ C     PD  T+ ILL G C+   LE A  +   M + G   D+  + ALISG+ 
Sbjct: 1   MIDKSC----QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYS 56

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           +     +A + L EM+K    P   TYT ++D  CK G TK   +LL EMR  G  P + 
Sbjct: 57  KAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIY 116

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441
           TYN ++ GLC+  +L  A  +L+ M   G  PD +TYN  ++G CK    ++  K  +  
Sbjct: 117 TYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 176

Query: 442 GLVSDYACYTSLVS 455
            +  D   YT++++
Sbjct: 177 PVTPDVVSYTTVIN 190



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M ++   P+   F  L+ G C++ +++      +AR+++  M   G  PD   Y  L+ G
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLE------KARQLLGRMKEMGCVPDDAIYNALISG 54

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           + K  D   A     EM+K       V +T ++ G C+ G+  +A ++L EM   G  P+
Sbjct: 55  YSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPN 114

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY ++++  C+        ++L+EM   G+ P V TYN+ + GLCK  ++  A   L 
Sbjct: 115 IYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLA 174

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            M    V PD ++Y  ++ G CK G+ +   ++    + +G   D   Y+SL+
Sbjct: 175 RM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLI 224



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 133/349 (38%), Gaps = 93/349 (26%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E+   G++P V  +N  +  LCK  ++K A+ VFD   +RG    A S++ L+   CK 
Sbjct: 276 VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKK 335

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           K LD+   L           D+  Y+ L++GLCK  R D+A  L  ++ +  +   DV F
Sbjct: 336 KELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFF 395

Query: 238 -TTLIDGHCKNGRIDMA----------------------------GDMKEARKIVDEMCT 268
              ++D HCK  +ID A                              + +A  ++  M  
Sbjct: 396 YNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVD 455

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG----------------------- 305
            G  PD +TY  L+D  CK G   +AL++ +E +K G                       
Sbjct: 456 EGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEE 515

Query: 306 -----IELDNVAFTALISGFCR------------------------------GGKVVEAE 330
                 +LD   + A+I G+                                 GK+V+AE
Sbjct: 516 AYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAE 575

Query: 331 RM------LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            +          +K G  PD      +ID F K GD +   R+   M+ 
Sbjct: 576 SLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 186/368 (50%), Gaps = 33/368 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V V++ L+     EG+I++A+ + D     G+      +N +I+   KA  ++E 
Sbjct: 180 GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEA 239

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 ++G G++PD  T+ A I G  K  ++ +A     EM + GL PN+ ++T LI+G
Sbjct: 240 STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLING 299

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           H K G +  A                             G ++EA K+  E+   GL PD
Sbjct: 300 HFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 359

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+ L+ GFCK+G++E A ++  EM  +GI  +   + AL+ G C+ G +  A ++  
Sbjct: 360 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 419

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M + GL+PD  TY+ +ID +CK+ +    F L  EM S G  P    YNAL++G CK G
Sbjct: 420 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 479

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            ++ A  L   ML  G     +++N L++G+CK    ++  +L  E   K ++ D+  YT
Sbjct: 480 DMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYT 538

Query: 452 SLVSKSSK 459
           +++    K
Sbjct: 539 TVIDWHCK 546



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 184/348 (52%), Gaps = 13/348 (3%)

Query: 114 LGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  LE+LD        PS   +  +++ LC    +  A  + ++    GL    V ++T
Sbjct: 131 MGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYST 190

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI G+     ++E  RL   M  SG+ PD++ Y+A+I+ L K  ++++A   L E+  RG
Sbjct: 191 LIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 250

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P+ V F   I G+ K G+      M EA K  DEM  +GL P+   YT+L++G  K G
Sbjct: 251 LKPDAVTFGAFILGYSKTGK------MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 304

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           +L  AL I + +   G+  D    +A I G  + G+V EA ++  E+ + GL PD  TY+
Sbjct: 305 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 364

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I  FCK G+ +  F L  EM   G  P +  YNAL++GLCK G ++ A  L D M + 
Sbjct: 365 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK 424

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G+ PD +TY+ +++G+CK  N  +   L  E   KG+      Y +LV
Sbjct: 425 GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 195/404 (48%), Gaps = 29/404 (7%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L +A+  FR L         + C   I  +++       L  + E+ + G  P V+ +
Sbjct: 304 GNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTY 363

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L+   CK+G+++ A  + DE   +G+      +N L++G CK+ ++    +L   M  
Sbjct: 364 SSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE 423

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PD  TYS +I+G CK   + +A  L HEM  +G+ P+  ++  L+ G CK      
Sbjct: 424 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKE----- 478

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            GDM++A  +  EM   G     +++  L+DG+CK   ++ A  + +EMI + I  D+V 
Sbjct: 479 -GDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT 536

Query: 313 FTALISGFCRGGKVVEAERMLRE-----------------MLKVGLKPDDATYTMVIDCF 355
           +T +I   C+ GK+ EA  + +E                 M+  G+KPD+ TY +VI   
Sbjct: 537 YTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAH 596

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK  +    F+L  E+   G L     ++ L+  LCK   L  A+ LLD M +LG+ P  
Sbjct: 597 CKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSL 656

Query: 416 ITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
              + L+    + G  ++    F+ ++S  GLV D      LV+
Sbjct: 657 AACSTLVRSFHEAGKMDEATRVFEGVKS-LGLVPDTTTLIDLVN 699



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 175/327 (53%), Gaps = 24/327 (7%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+++++N L+  LCK G I+ A+ +FD   ++GL   +V+++T+I+G+CK++N+ E 
Sbjct: 390 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 449

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L   M   G++P  + Y+AL++G CKE  ++ A  L  EM ++G     + F TLIDG
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT-LSFNTLIDG 508

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM-- 301
           +CK+ +I      +EA ++  EM    + PD +TYT ++D  CK G +E A  + KEM  
Sbjct: 509 YCKSCKI------QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 562

Query: 302 ---------------IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
                          + +G++ D V +  +I   C+   +VEA ++  E++  G+     
Sbjct: 563 RNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 622

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            + ++I   CK  D     +LL EM   G  P++   + L+    + G++  A  + + +
Sbjct: 623 IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 682

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPED 433
             LG+VPD  T   L+ G+    + ED
Sbjct: 683 KSLGLVPDTTTLIDLVNGNLNDTDSED 709



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y + ++   LC+  ++ +A++ F+E  K GL     + + LI+G  +  ++DE 
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+K VM   G+  ++ TY+ LI+GLCK  +++ A  +L  M   G  PN   F  LI+G
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 124

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C+        +M  A +++DEM    L P  ++Y  +++G C   DL  A  + ++M  
Sbjct: 125 YCREH------NMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 178

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + V ++ LI G+   G++ EA R+L  M   G+ PD   Y  +I C  K G  + 
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 238

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
               L E++  G  P   T+ A + G  K G++  A    D MLD G++P++  Y +L+ 
Sbjct: 239 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 298

Query: 424 GHCKHGN 430
           GH K GN
Sbjct: 299 GHFKAGN 305



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G++GL     ++  +  G C+AK ++E       M+ +G++PD    SALI+G  +E  +
Sbjct: 2   GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 61

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D+   +   M   G+  N + +  LI G CK G+      M++A +I+  M T G  P+ 
Sbjct: 62  DEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGK------MEKAAEILKGMITLGCKPNS 115

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            T+ +L++G+C+E ++  AL++  EM KR +    V++ A+I+G C    +  A ++L +
Sbjct: 116 RTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK 175

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   GLKP+   Y+ +I  +   G  +   RLL  M   G  P +  YNA+++ L K G+
Sbjct: 176 MTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGK 235

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
           ++ A+  L  +   G+ PD +T+   + G+ K G   +  K   E    GL+ +   YT 
Sbjct: 236 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 295

Query: 453 LVS 455
           L++
Sbjct: 296 LIN 298



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 9/238 (3%)

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M E+GL PN   +T +  G C+  R      M EA+   +EM   GL PD    + L+DG
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKR------MNEAKLTFEEMQKTGLKPDYNACSALIDG 54

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           F +EGD++  L I+  M+  GI ++ + +  LI G C+ GK+ +A  +L+ M+ +G KP+
Sbjct: 55  FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 114

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             T+ ++I+ +C+  +      LL EM     +P+  +Y A++NGLC    L  AN LL+
Sbjct: 115 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
            M   G+ P+ + Y+ L+ G+   G  E+  +L    S  G+  D  CY +++S  SK
Sbjct: 175 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 232



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 136/273 (49%), Gaps = 9/273 (3%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+ P+ YTY+ +  GLC+  R+++A+L   EM + GL P+    + LIDG  + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           ID      E  +I D M + G+  + ITY +L+ G CK G +E A +I K MI  G + +
Sbjct: 61  ID------EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           +  F  LI G+CR   +  A  +L EM K  L P   +Y  +I+  C   D     +LL+
Sbjct: 115 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P V  Y+ L+ G    G+++ A  LLD M   GV PD   YN ++    K G
Sbjct: 175 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 234

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
             E+      E   +GL  D   + + +   SK
Sbjct: 235 KMEEASTYLLEIQGRGLKPDAVTFGAFILGYSK 267



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 54/107 (50%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G      + ++L+  LCK   + +A  + DE G+ GL  +  + +TL+    +A 
Sbjct: 611 EVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAG 670

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
            +DE  R+   ++  G+ PD  T   L+NG   +   +DA  L+ ++
Sbjct: 671 KMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 717


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 189/366 (51%), Gaps = 12/366 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R +   + L    +++ +GY P V   + L++  C+  ++ DA  +  +  + G
Sbjct: 51  VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 110

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V +NT+I+G CK   +++   L   ME  G+R D  TY++L+ GLC   R  DA 
Sbjct: 111 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 170

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ +M  R + PN + FT +ID   K G+        EA K+ +EM    ++PD  TY 
Sbjct: 171 RLMRDMVMRDIVPNVITFTAVIDVFVKEGK------FSEAMKLYEEMTRRCVDPDVFTYN 224

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G C  G ++ A  +   M+ +G   D V +  LI+GFC+  +V E  ++ REM + 
Sbjct: 225 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 284

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL  D  TY  +I  + + G       +   M S    P + TY+ L+ GLC + +++ A
Sbjct: 285 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKA 341

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQSE--KGLVSDYACYTSLVSK 456
            +L + M    +  D  TYNI++ G CK GN ED +D  +S   KGL  D   YT+++S 
Sbjct: 342 LVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 401

Query: 457 SSKYRQ 462
             + RQ
Sbjct: 402 FCRKRQ 407



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 165/296 (55%), Gaps = 9/296 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V F+ +++   K+KN D    L   ME  G+  D+Y+Y+ +IN LC+ +R   A  ++
Sbjct: 9   SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 68

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M + G  P+ V  ++LI+G C+  R+  A D+      V +M   G  PD + Y  ++
Sbjct: 69  GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL------VSKMEEMGFRPDVVIYNTII 122

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK G +  A+++   M + G+  D V + +L++G C  G+  +A R++R+M+   + 
Sbjct: 123 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIV 182

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  T+T VID F K G      +L +EM      P V TYN+L+NGLC HG++  A  +
Sbjct: 183 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 242

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           LD M+  G +PD +TYN L+ G CK    ++  KL    +++GLV D   Y +++ 
Sbjct: 243 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 298



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 162/321 (50%), Gaps = 10/321 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F+ ++ K+ K         +F      G+     S+N +IN  C+         +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PDV T S+LING C+ NR+ DA  L+ +M E G  P+ VI+ T+IDG CK
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G ++      +A ++ D M  +G+  D +TY  L+ G C  G    A  + ++M+ R I
Sbjct: 128 IGLVN------DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 181

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + + FTA+I  F + GK  EA ++  EM +  + PD  TY  +I+  C +G      +
Sbjct: 182 VPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 241

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L  M + G LP V TYN L+NG CK  ++     L   M   G+V D ITYN +++G+ 
Sbjct: 242 MLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 301

Query: 427 KHGNP----EDFDKLQSEKGL 443
           + G P    E F ++ S   +
Sbjct: 302 QAGRPDAAQEIFSRMDSRPNI 322



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 46/328 (14%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC------ 175
           + G+ P V ++N ++   CK G + DA  +FD   + G+ A AV++N+L+ G C      
Sbjct: 108 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWS 167

Query: 176 -----------------------------KAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
                                        K     E  +L   M    + PDV+TY++LI
Sbjct: 168 DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 227

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           NGLC   R+D+A+ +L  M  +G  P+ V + TLI+G CK+ R+D      E  K+  EM
Sbjct: 228 NGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVD------EGTKLFREM 281

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV-AFTALISGFCRGGK 325
              GL  D ITY  ++ G+ + G  ++A +I   M  R     N+  ++ L+ G C   +
Sbjct: 282 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR----PNIRTYSILLYGLCMNWR 337

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V +A  +   M K  ++ D  TY +VI   CK G+ +  + L + +   G  P V +Y  
Sbjct: 338 VEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTT 397

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVP 413
           +++G C+  Q   +++L   M + G++P
Sbjct: 398 MISGFCRKRQWDKSDLLYRKMQEDGLLP 425


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/424 (30%), Positives = 203/424 (47%), Gaps = 20/424 (4%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G    A+    ILE  G     +  + L+  Y   G +D+A+Q          R+     
Sbjct: 106 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLD-------RMNVAPD 158

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYS----PSVYVFNVLMHKLCKEGKIKDAQMVFD 153
               + ++RT   +  L   +E+LD        P V  + +L+   CKE  +  A  + D
Sbjct: 159 VVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLD 218

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   +G     V++N LING CK   LDE  +  + M   G +P+V T++ ++  +C   
Sbjct: 219 EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTG 278

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           R  DAE LL +M  +G +P+ V F  LI+  C+ G +  A D      I+++M  +G  P
Sbjct: 279 RWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID------ILEKMPMHGCTP 332

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           + ++Y  LL GFCKE  ++ A++    M+ RG   D V +  L++  C+ GKV  A  +L
Sbjct: 333 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 392

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            ++   G  P   TY  VID   K G T+   +LL EMR  G  P + TY++L++GL + 
Sbjct: 393 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 452

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
           G++  A      +  LG+ P+ ITYN ++ G CK    +   DF      K      A Y
Sbjct: 453 GKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATY 512

Query: 451 TSLV 454
           T L+
Sbjct: 513 TILI 516



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 176/351 (50%), Gaps = 16/351 (4%)

Query: 115 GF-YLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF +LE + Y G  P +     L+   C+ GK K A  V +   + G     +++N LI+
Sbjct: 76  GFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLIS 135

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CK+  +D   +   V++   + PDV TY+ ++  LC   +L  A  +L    ++   P
Sbjct: 136 GYCKSGEIDNALQ---VLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYP 192

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + +T LI+  CK   +       +A K++DEM   G  PD +TY +L++G CKEG L+
Sbjct: 193 DVITYTILIEATCKESGVG------QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+     M   G + + +    ++   C  G+ ++AE++L +ML+ G  P   T+ ++I
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 306

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  C+ G       +L++M   G  P   +YN L++G CK  ++  A   LD M+  G  
Sbjct: 307 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 366

Query: 413 PDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           PD +TYN LL   CK G      E  ++L S KG       Y +++   SK
Sbjct: 367 PDIVTYNTLLTALCKDGKVDVAVEILNQLSS-KGCSPVLITYNTVIDGLSK 416



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 187/394 (47%), Gaps = 20/394 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFR--IP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDY-GYSPS 128
           G L+D    F+ L    +R  IP    C  LI    R    T    + +EIL+  G  P 
Sbjct: 71  GELEDG---FKFLESMVYRGDIPDIIPCTSLIRGFCRIG-KTKKATWVMEILEQSGAVPD 126

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +NVL+   CK G+I +A  V D   +  +    V++NT++   C +  L +   +  
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLD---RMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
                   PDV TY+ LI   CKE+ +  A  LL EM  +G  P+ V +  LI+G CK G
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R+D      EA K ++ M + G  P+ IT+ I+L   C  G    A  +  +M+++G   
Sbjct: 244 RLD------EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP 297

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V F  LI+  CR G +  A  +L +M   G  P+  +Y  ++  FCK          L
Sbjct: 298 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 357

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M S G  P + TYN L+  LCK G++  A  +L+ +   G  P  ITYN +++G  K 
Sbjct: 358 DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 417

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           G  E   KL  E   KGL  D   Y+SLVS  S+
Sbjct: 418 GKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 451



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 12/323 (3%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           + +L + G+++D     +    RG     +   +LI G C+     +   +  ++E SG 
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PDV TY+ LI+G CK   +D+A  +L  M    + P+ V + T++   C +G+      
Sbjct: 124 VPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGK------ 174

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +K+A +++D        PD ITYTIL++  CKE  +  A+ +  EM  +G + D V +  
Sbjct: 175 LKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNV 234

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI+G C+ G++ EA + L  M   G +P+  T+ +++   C  G      +LL +M   G
Sbjct: 235 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 294

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE--- 432
             P+V T+N L+N LC+ G L  A  +L+ M   G  P+ ++YN LL G CK    +   
Sbjct: 295 CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 354

Query: 433 DFDKLQSEKGLVSDYACYTSLVS 455
           ++  +   +G   D   Y +L++
Sbjct: 355 EYLDIMVSRGCYPDIVTYNTLLT 377



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           R G++ +  + L  M+  G  PD    T +I  FC+ G TK    +++ +   G +P V 
Sbjct: 69  RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 128

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----PEDFDKL 437
           TYN L++G CK G++ NA  +LD M    V PD +TYN +L   C  G      E  D+ 
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDR- 184

Query: 438 QSEKGLVSDYACYTSLVSKSSK 459
           Q +K    D   YT L+  + K
Sbjct: 185 QLQKECYPDVITYTILIEATCK 206


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 216/448 (48%), Gaps = 31/448 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+ +L +   +   L+  KMH Q   L  L++S+    +  S F+               
Sbjct: 42  FKPSLQSVPAIARILITAKMHPQIDHLHQLLLSQHRDFAHPSGFS--------------- 86

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT----VTLGFYL 118
             L+    DLG L++AI  FR LR  +   P        + + R +L        +  Y 
Sbjct: 87  --LVRTLADLGLLENAISQFRSLRDRFPHDPPP--ISFYNLLFRCSLKESRVDCVIWLYK 142

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++      P  Y FN+L+  LC+ G +++A+ VFD+  ++G      S   L+ G+C+A 
Sbjct: 143 DMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAG 202

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
               G  L   M  SG  P+   Y+ +I+ LC E +  +AE L+ +M E GL+P+ V F 
Sbjct: 203 LHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN 262

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTILLDGFCKEGDLESALDI 297
             I   CK+G+I  A  +    +I +EM   GL  P+ +TY ++L+GFC EG  E A  I
Sbjct: 263 CRIAALCKSGQILEASRIFRDMQIDEEM---GLPKPNTVTYNLMLEGFCSEGMFEEARAI 319

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              M K    L   ++   + G  R GK++EA  +L EM +  +KP+  +Y +++   CK
Sbjct: 320 FDSM-KNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCK 378

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G       +L  MR  G  P   TY+ L++G C+ G++  AN +L  M+ +G  P+  T
Sbjct: 379 YGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYT 438

Query: 418 YNILLEGHCKHG---NPEDFDKLQSEKG 442
            NILL    K G     ED  ++ +E+G
Sbjct: 439 CNILLHSLWKEGRASEAEDLLQMMNERG 466



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 31/328 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-A 177
           E+ +    P++Y +N+L+H LCK G   DA+ +     + G+    V+++TL++G+C+  
Sbjct: 356 EMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRG 415

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           K L+  + L+ +++  G  P++YT + L++ L KE R  +AE LL  M ERG   ++V  
Sbjct: 416 KILEANYVLREMIQ-VGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTC 474

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-----------------------PD 274
            T+I+G CK      AG++ +A +IV  M T G                         PD
Sbjct: 475 NTMINGLCK------AGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPD 528

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            ITY  ++ G CK G ++ A     EMI + +  D++ F   I  +C+ GK+  A R+L+
Sbjct: 529 SITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLK 588

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM K G      TY  +I            + L+ EM+  G  P V TYN +++ L + G
Sbjct: 589 EMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGG 648

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILL 422
           +LK+A  LLD ML  G+ P+  T+ IL+
Sbjct: 649 KLKDATCLLDEMLQKGISPNIYTFRILI 676



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 29/329 (8%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+  +N+ M  L + GK+ +A ++ +E  ++ +     S+N L++G CK     +   + 
Sbjct: 330 SLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSIL 389

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +M  SG+ PD  TYS L++G C+  ++ +A  +L EM + G  PN      L+    K 
Sbjct: 390 GLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKE 449

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG-- 305
           GR        EA  ++  M   G   D +T   +++G CK G+L+ A++I   M  RG  
Sbjct: 450 GRAS------EAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSA 503

Query: 306 ---------IEL------------DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
                    I+L            D++ +  +I G C+ G+V EA++ L EM+   L PD
Sbjct: 504 SLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPD 563

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
              +   I  +CK G   + FR+LKEM   G   ++ TYN+L+ GL    Q+     L+D
Sbjct: 564 SLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMD 623

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPED 433
            M + G+ P+  TYN ++    + G  +D
Sbjct: 624 EMKERGIFPNVYTYNNIISCLSEGGKLKD 652



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 161/339 (47%), Gaps = 32/339 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P++Y  N+L+H L KEG+  +A+ +     +RG     V+ NT+ING CKA 
Sbjct: 426 EMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAG 485

Query: 179 NLDEGFRLKSVMEGSGMR-----------------------PDVYTYSALINGLCKENRL 215
           NLD+   + S M   G                         PD  TY+ +I GLCK  R+
Sbjct: 486 NLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRV 545

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D+A+  L EM  + L+P+ +IF T I  +CK G+      +  A +++ EM   G N   
Sbjct: 546 DEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGK------LSSAFRVLKEMEKKGCNKSL 599

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+ G   E  +     +  EM +RGI  +   +  +IS    GGK+ +A  +L E
Sbjct: 600 RTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDE 659

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHG 394
           ML+ G+ P+  T+ ++I  F K  D      L +   S  GH  ++  Y+ + N L   G
Sbjct: 660 MLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESL--YSFMFNELLAGG 717

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +   A  L +  LD  +   +  Y  L+E  CK G  +D
Sbjct: 718 ETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDD 756



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 155/357 (43%), Gaps = 37/357 (10%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LLH +  K+G  S A     ++  RG  L  +  + ++      G LD AI+    +   
Sbjct: 442 LLHSLW-KEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTR 500

Query: 89  --------------YFRIPARGCRCLIDRMMRTNLPTVTLGF------------YLEILD 122
                          F I   G +CL D +      T+  G              LE++ 
Sbjct: 501 GSASLGNLGNSFIDLFDIRNNGKKCLPDSI---TYATIIGGLCKVGRVDEAKKKLLEMIG 557

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
              SP   +F+  ++  CK+GK+  A  V  E  K+G + +  ++N+LI G      + E
Sbjct: 558 KKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFE 617

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            + L   M+  G+ P+VYTY+ +I+ L +  +L DA  LL EM ++G++PN   F  LI 
Sbjct: 618 IYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIG 677

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              K       G  +E  +I   +C +     +  Y+ + +     G+   A ++ +  +
Sbjct: 678 AFFKACDF---GAAQELFEIALSLCGH----KESLYSFMFNELLAGGETLKAKELFEAAL 730

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            R + L N  +  LI   C+ GK+ +A  +L +M+      D A++  VID   K G
Sbjct: 731 DRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRG 787



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 11/264 (4%)

Query: 49  ILETRGTHLP--GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
           +LE  G  L    L+ D  +  Y   G L  A +  + + K       R    LI  +  
Sbjct: 552 LLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGS 611

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
            N      G   E+ + G  P+VY +N ++  L + GK+KDA  + DE  ++G+     +
Sbjct: 612 ENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYT 671

Query: 167 FNTLINGHCKAKNLDEGFRLKSV-MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           F  LI    KA +      L  + +   G +  +Y++  + N L        A+ L    
Sbjct: 672 FRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSF--MFNELLAGGETLKAKELFEAA 729

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
            +R L   + ++  LI+  CK+G++D      +A  I+ +M     + D  ++  ++D  
Sbjct: 730 LDRSLALKNFLYRDLIEKLCKDGKLD------DASFILHKMMDKQYSFDPASFMPVIDEL 783

Query: 286 CKEGDLESALDIRKEMIKRGIELD 309
            K G   +A +  + M++   E D
Sbjct: 784 GKRGSKHAADEFAERMMEMASETD 807


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 176/315 (55%), Gaps = 6/315 (1%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V  ++VL+  LCK  ++  A  + +    RG     +++  L++G CK   +   + 
Sbjct: 110 SPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE 169

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M  +G  P++ TY++L++GLC+  R+ DA  L+ +M  RG TPN V + TLIDG C
Sbjct: 170 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 229

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GR+      K+A  ++ +M   G  PD + Y +L++G CK   ++ ++ + +  +  G
Sbjct: 230 KVGRV------KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 283

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+ D V ++++I G CR  ++ EA R+L  +   G  PD   Y+ +ID  CK G     F
Sbjct: 284 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 343

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L + M  DG    V TY+ L++GLCK G++  A++LL  M+ +G  P  +TYN L++G 
Sbjct: 344 DLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 403

Query: 426 CKHGNPEDFDKLQSE 440
           C   + ++  +L  E
Sbjct: 404 CDLNHLDEAIELVEE 418



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 183/366 (50%), Gaps = 10/366 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + + N  +  +     +   G SP V  + +L+  LCKE K+  A  V  E    G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++N+L++G C+A+ + +   L   M   G  P+V TY  LI+GLCK  R+ DA 
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 238

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L +M ++G TP+ +I+  LI+G CK  ++D      E+  ++    + G+ PD +TY+
Sbjct: 239 AMLADMIDKGGTPDLMIYNMLINGLCKADQVD------ESIALLRRAVSGGIKPDVVTYS 292

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ G C+   L+ A  +   +  RG   D + ++ LI G C+ GKV EA  +   M   
Sbjct: 293 SVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGD 352

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G   D  TY+ +ID  CK G       LL  M   G  P+  TYN+L+ GLC    L  A
Sbjct: 353 GCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEA 412

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE----DFDKLQSEKGLVSDYACYTSLVS 455
             L++ M      P  +TYNIL+ G C+    +    D+ +   + G++ D+  Y+ L+ 
Sbjct: 413 IELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLE 472

Query: 456 KSSKYR 461
              K +
Sbjct: 473 GLKKSK 478



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 183/358 (51%), Gaps = 11/358 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + + N P      +  +     SPS+  +N L+  L + GK++ A  +F E   R 
Sbjct: 16  LIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR 75

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            H   +SFN L+ G C+A  ++        M+     P+V TYS LI+GLCK NR+  A 
Sbjct: 76  SH-DVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAV 133

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  M  RG +P+ + +T L+DG CK  ++        A +++ EM   G  P+ +TY 
Sbjct: 134 ELLESMKARGCSPDVITYTILVDGLCKESKV------AAAWEVLREMLDAGCVPNLVTYN 187

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            LL G C+   +  AL + ++M  RG   + V +  LI G C+ G+V +A  ML +M+  
Sbjct: 188 SLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK 247

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD   Y M+I+  CK         LL+   S G  P V TY++++ GLC+  +L  A
Sbjct: 248 GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEA 307

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGN-PEDFD--KLQSEKGLVSDYACYTSLV 454
             LL  +   G  PD I Y+ L++G CK G   E FD  ++ +  G  +D   Y++L+
Sbjct: 308 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLI 365



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 176/336 (52%), Gaps = 11/336 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D+G  P+V  +N L+  LCK  +   AQ +F+         + V++NTL++G  +   L+
Sbjct: 3   DHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLE 62

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M       DV +++ L+ GLC+  +++ A     +M +R  +PN + ++ LI
Sbjct: 63  RAMALFQEMLDRRSH-DVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLI 120

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           DG CK  R+  A ++ E+ K        G +PD ITYTIL+DG CKE  + +A ++ +EM
Sbjct: 121 DGLCKANRVSQAVELLESMK------ARGCSPDVITYTILVDGLCKESKVAAAWEVLREM 174

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G   + V + +L+ G CR  +V +A  ++R+M   G  P+  TY  +ID  CK G  
Sbjct: 175 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 234

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           K    +L +M   G  P +  YN L+NGLCK  Q+  +  LL   +  G+ PD +TY+ +
Sbjct: 235 KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSV 294

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           + G C+    ++  +L      +G   D   Y++L+
Sbjct: 295 IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLI 330



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 156/289 (53%), Gaps = 8/289 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+V  +  L+  LCK G++KDA  +  +   +G     + +N LING CKA  +DE 
Sbjct: 213 GCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDES 272

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L       G++PDV TYS++I GLC+ NRLD+A  LL  +  RG  P+ ++++TLIDG
Sbjct: 273 IALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDG 332

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G++D A D+ E       M  +G + D +TY+ L+DG CK G ++ A  +   M++
Sbjct: 333 LCKAGKVDEAFDLYEV------MTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVR 386

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G     + + +LI G C    + EA  ++ EM +    P   TY ++I   C+     +
Sbjct: 387 MGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDS 446

Query: 364 G-FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN-ANMLLDTMLDLG 410
                 +EM  +G +P   TY+ L+ GL K   L    +++LD M+ LG
Sbjct: 447 AALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 495



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 148/295 (50%), Gaps = 30/295 (10%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G  P+V TY++LI+GLCK N  D A+ L   M     +P+ V + TL+DG  + G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 250 IDMA----GDMKEARK--------IVDEMCTNG---------------LNPDKITYTILL 282
           ++ A     +M + R         +V  +C  G                +P+ ITY++L+
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK   +  A+++ + M  RG   D + +T L+ G C+  KV  A  +LREML  G  
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 180

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  TY  ++   C+         L+++M   G  P V TY  L++GLCK G++K+A  +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           L  M+D G  PD + YN+L+ G CK    ++   L       G+  D   Y+S++
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVI 295



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  ++ +++ LC+  ++ +A  +      RG     + ++TLI+G CKA  +DE 
Sbjct: 283 GIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEA 342

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L  VM G G   DV TYS LI+GLCK  R+D+A LLL  M   G  P+ + + +LI G
Sbjct: 343 FDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 402

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA-LDIRKEMI 302
            C    +D      EA ++V+EM  +   P  +TY IL+ G C+   ++SA LD  +EMI
Sbjct: 403 LCDLNHLD------EAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMI 456

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERM-LREMLKVGLK 342
             G+  D++ ++ L+ G  +   + E   + L +M+++G +
Sbjct: 457 DNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 497


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 183/394 (46%), Gaps = 44/394 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+     N P        +IL  G  P    F  L+  LC EGKI DA  +FD+    G
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 160 LHATAVSFNTLINGHCKAKNLD-----------------------------------EGF 184
                V++ TLING CK  N +                                   E F
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 227

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L S M G G+ PD++TY++LI+ LC          LL++M    + P+ VIF+T++D  
Sbjct: 228 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL 287

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G+I       EA  +VD M   G+ P+ +TY  L+DG C + +++ A+ +   M+  
Sbjct: 288 CKEGKI------TEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN 341

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   + +++  LI+G+C+  ++ +A  +  EM +  L P+  TY  ++   C  G  +  
Sbjct: 342 GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDA 401

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L  EM + G +P + TY  L++ LCK   L  A  LL T+    + PD   Y I+++G
Sbjct: 402 IALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDG 461

Query: 425 HCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
            C+ G  E   D     S KGL  +   YT +++
Sbjct: 462 MCRAGELEAARDIFSNLSSKGLRPNVRTYTIMIN 495



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 175/331 (52%), Gaps = 14/331 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++    P V +F+ ++  LCKEGKI +A  V D    RG+    V++N L++GHC   
Sbjct: 267 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 326

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++   M  +G  P+V +Y+ LING CK  R+D A  L  EMC++ L PN V + 
Sbjct: 327 EMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYN 386

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C  GR      +++A  +  EM  +G  PD  TY ILLD  CK+  L+ A+ + 
Sbjct: 387 TLMHGLCHVGR------LQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALL 440

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K +    ++ D   +T +I G CR G++  A  +   +   GL+P+  TYT++I+  C+ 
Sbjct: 441 KTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRR 500

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      +L  EM  +G  P   TYN +  GL ++ +   A  LL  ML  G   D  T 
Sbjct: 501 GLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTT 560

Query: 419 NILLEGHCKHGNPEDFDKL-QSEKGLVSDYA 448
            +L+E  C        DKL QS K ++S++ 
Sbjct: 561 TLLVEMLCD-------DKLDQSVKQILSEFV 584



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 183/389 (47%), Gaps = 11/389 (2%)

Query: 70  VDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           ++   LDDA+  F R+L  H         R L         PTV      ++  +G  P 
Sbjct: 43  LNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTV-FSLSNQMDSFGIPPD 101

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           VY  N+L++  C   +   A  V  +  K GL     +F TLI G C    + +   L  
Sbjct: 102 VYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFD 161

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M G G +P+V TY  LINGLCK    + A  LL  M +    P+ V++T++ID  CK+ 
Sbjct: 162 KMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 221

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       EA  +  +M   G++PD  TYT L+   C   + +    +  +MI   I  
Sbjct: 222 QV------TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMP 275

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V F+ ++   C+ GK+ EA  ++  M+  G++P+  TY  ++D  C   +     ++ 
Sbjct: 276 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 335

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M  +G+ P V +YN L+NG CK  ++  A  L + M    ++P+ +TYN L+ G C  
Sbjct: 336 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHV 395

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G  +D   L  E    G + D A Y  L+
Sbjct: 396 GRLQDAIALFHEMVAHGQIPDLATYRILL 424



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 165/322 (51%), Gaps = 11/322 (3%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   F+         + V FN L+    K K     F L + M+  G+ PDVYT + 
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN  C  NR   A  +L ++ + GL P+   FTTLI G C  G+I   GD   A  + D
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKI---GD---ALHLFD 161

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G  P+ +TY  L++G CK G+  +A+ + + M +   + D V +T++I   C+  
Sbjct: 162 KMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 221

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +V EA  +  +M+  G+ PD  TYT +I   C   + K    LL +M +   +P V  ++
Sbjct: 222 QVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFS 281

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSE 440
            +++ LCK G++  A+ ++D M+  GV P+ +TYN L++GHC     ++    FD +   
Sbjct: 282 TVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTM-VH 340

Query: 441 KGLVSDYACYTSLVSKSSKYRQ 462
            G   +   Y +L++   K ++
Sbjct: 341 NGYAPNVISYNTLINGYCKIQR 362



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 139/303 (45%), Gaps = 6/303 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G  + A     ++  RG     +  +ALM  +     +D+A++ F  +  + +     
Sbjct: 289 KEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVI 348

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+   +          + E+      P+   +N LMH LC  G+++DA  +F E 
Sbjct: 349 SYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEM 408

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G      ++  L++  CK  +LDE   L   +EGS M PD+  Y+ +I+G+C+   L
Sbjct: 409 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 468

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           + A  +   +  +GL PN   +T +I+G C+ G +D      EA K+  EM  NG +PD 
Sbjct: 469 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLD------EANKLFMEMDGNGCSPDG 522

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  +  G  +  +   A+ + +EM+ RG   D    T L+   C        +++L E
Sbjct: 523 CTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSE 582

Query: 336 MLK 338
            ++
Sbjct: 583 FVQ 585


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 188/358 (52%), Gaps = 12/358 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   R +       F  ++   G +P V   N+L+  +CK+G +++A  + D     G
Sbjct: 175 LINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAG 234

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +++N++I+  C A  + E   +   M  S   PD+ T++ L++G CK   L  A 
Sbjct: 235 PVPDVITYNSIIHALCVAGKVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRAL 291

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L EMC   + P+ + +T L++G C+ G++ +A        +++E+   G  PD I YT
Sbjct: 292 EVLEEMCRENILPDVITYTILVNGLCRVGQVQVA------FYLLEEIVRQGYIPDVIAYT 345

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG CK G++E A  + KEM  RG     V +++L+SG+CR G V +A  +L EM+ +
Sbjct: 346 SLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSI 405

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + P   TY +V+    K+G       L+ ++ + G++P V TYN L++GLCK  +++ A
Sbjct: 406 NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA 465

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             L D M   G  P+D+T   ++ G C+ G  +D   L    S K    +   YTSL+
Sbjct: 466 CDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLI 523



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 226/463 (48%), Gaps = 65/463 (14%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQA----RDLLHLIVSKKGMGSSASLFASILETRGTHLP 58
           ++  +H+Y+ ++  LV    H +     +DLLH        G S +L    +  RG    
Sbjct: 23  YKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLH-------SGCSPNLVTFKILIRGNCKA 75

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G  + AL  +         A+  F +    Y          LI  + +   P   +  + 
Sbjct: 76  GQAMRALEFLR--------ALDEFSVAPDVYI------FNVLIHGLFKDGNPDQAVKLFE 121

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA--VSFNTLINGHCK 176
            +      P +  +N ++  LCK G ++ A+ + +E  ++G  +    V++NTLIN   +
Sbjct: 122 NMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYR 181

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELL-------------- 221
           A  + E    +  M+ +G+ PDV T + L++G+CK+  +++A E+L              
Sbjct: 182 ASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVIT 241

Query: 222 ----LHEMCERG-------------LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
               +H +C  G              +P+ V F TL+DG CK      AG +  A ++++
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCK------AGMLPRALEVLE 295

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EMC   + PD ITYTIL++G C+ G ++ A  + +E++++G   D +A+T+L+ G C+ G
Sbjct: 296 EMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSG 355

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++ EA ++++EM   G +     Y+ ++  +C+ G+      +L EM S   +P + TYN
Sbjct: 356 EIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYN 415

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            ++ GL K G +  A  L+  ++  G VPD +TYN L++G CK
Sbjct: 416 IVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCK 458



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 192/397 (48%), Gaps = 58/397 (14%)

Query: 104 MMRTNLPTVTLGFYLEILDY-----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           M R++ P + + F+    D+     GY   V+ +N L+  L K G       V+ +    
Sbjct: 1   MRRSSRPDLAIQFF----DWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHS 56

Query: 159 GLHATAVSFNTLINGHCKA-----------------------------------KNLDEG 183
           G     V+F  LI G+CKA                                    N D+ 
Sbjct: 57  GCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQA 116

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPNDVIFTTLI 241
            +L   ME S ++P++ TY+ +I+GLCK   L+ A  LL EM  +G    P+ V + TLI
Sbjct: 117 VKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLI 176

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +   +  RI      +EA    ++M   G+NPD +T  IL+ G CK+GD+E AL+I   M
Sbjct: 177 NAFYRASRI------REACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGM 230

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              G   D + + ++I   C  GKVVEA  +L+ M      PD  T+  ++D FCK G  
Sbjct: 231 KLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGML 287

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                +L+EM  +  LP V TY  L+NGLC+ GQ++ A  LL+ ++  G +PD I Y  L
Sbjct: 288 PRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSL 347

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           ++G CK G  E+  KL  E   +G  +    Y+SLVS
Sbjct: 348 VDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVS 384



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 156/297 (52%), Gaps = 6/297 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP +  FN L+   CK G +  A  V +E  +  +    +++  L+NG C+   +   F 
Sbjct: 268 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 327

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   +   G  PDV  Y++L++GLCK   +++A  L+ EM  RG     V++++L+ G+C
Sbjct: 328 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +      AG++ +AR+I+ EM +  + P   TY I+L G  K+G +  A+ +  +++ RG
Sbjct: 388 R------AGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARG 441

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D V +  LI G C+  +V EA  +  EM   G  P+D T   V+   C+ G     +
Sbjct: 442 YVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAW 501

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            L+ EM    H P V  Y +L++GLCK  ++ +A M+LD M   GV  DD  Y  L+
Sbjct: 502 SLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLI 558



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 173/348 (49%), Gaps = 17/348 (4%)

Query: 118 LEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LEILD     G  P V  +N ++H LC  GK+ +A  +             V+FNTL++G
Sbjct: 224 LEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS---CSPDLVTFNTLLDG 280

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CKA  L     +   M    + PDV TY+ L+NGLC+  ++  A  LL E+  +G  P+
Sbjct: 281 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 340

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + +T+L+DG CK+G I+      EA K+V EM   G     + Y+ L+ G+C+ G++  
Sbjct: 341 VIAYTSLVDGLCKSGEIE------EAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHK 394

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A +I  EM+   +      +  ++ G  + G + +A  ++ +++  G  PD  TY  +ID
Sbjct: 395 AREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLID 454

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK    +    L  EM S G  P   T  +++ GLC+ G++ +A  L+  M      P
Sbjct: 455 GLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAP 514

Query: 414 DDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKS 457
           + + Y  L++G CK    +D     D ++ +   + D+A    +VS S
Sbjct: 515 NVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMS 562



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 8/292 (2%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           V + FYL  EI+  GY P V  +  L+  LCK G+I++A  +  E   RG     V +++
Sbjct: 322 VQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSS 381

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L++G+C+A N+ +   + + M    M P ++TY+ ++ GL K+  +  A  L+ ++  RG
Sbjct: 382 LVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARG 441

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             P+ V + TLIDG CK  R+      +EA  + DEM + G  P+ +T   ++ G C+ G
Sbjct: 442 YVPDVVTYNTLIDGLCKANRV------REACDLADEMASRGCFPNDVTLGSVVFGLCRVG 495

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A  +  EM ++    + V +T+LI G C+  ++ +A  +L  M   G+  DD  Y 
Sbjct: 496 RVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYR 555

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            +I      G       +  EM + G LP   T   L      +   +  N+
Sbjct: 556 KLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFEWTNL 607



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + + N          E+   G  P+      ++  LC+ G++ DA  +  E  ++ 
Sbjct: 452 LIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR 511

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V + +LI+G CK+  +D+   +   M G G+  D + Y  LI  +    R+ +A 
Sbjct: 512 HAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAM 571

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +  EM  RG  P+     TL +    N
Sbjct: 572 AMYDEMVARGFLPDGSTSKTLEEAAMSN 599


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 185/330 (56%), Gaps = 13/330 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           YG S  +Y F +L+H  C+  ++  A  V  +  K G   + V+F +L++G C    + +
Sbjct: 100 YGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGD 159

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            F L  +M  SG  P+V  Y+ LI+GLCK   L+ A  LL+EM ++GL  + V + TL+ 
Sbjct: 160 AFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLT 219

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C +GR        +A +++ +M    +NPD +T+T L+D F K+G+L+ A ++ KEMI
Sbjct: 220 GLCYSGR------WSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMI 273

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +  ++ +NV + ++I+G C  G++ +A++    M   G  P+  TY  +I  FCK     
Sbjct: 274 QSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVD 333

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            G +L + M  +G    + TYN L++G C+ G+L+ A  +   M+   V PD IT+ ILL
Sbjct: 334 EGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILL 393

Query: 423 EGHCKHGNPED----FDKL-QSEK--GLVS 445
            G C +G  E     FD + +SEK  G+V+
Sbjct: 394 HGLCVNGEIESALVKFDDMRESEKYIGIVA 423



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 172/348 (49%), Gaps = 29/348 (8%)

Query: 119  EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            +++  G+ PS+     L++  C+  + ++A  + D     G     V +NT+ING CK +
Sbjct: 664  KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 179  NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +L+    +   ME  G+R D  TY+ LI+GL    R  DA  LL +M +R + PN + FT
Sbjct: 724  DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783

Query: 239  TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
             LID   K G +  A                             G + +A+ + D M + 
Sbjct: 784  ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 843

Query: 270  GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            G  PD +TY  L+ GFCK   +E  + +  EM  +G+  D   +  LI G+C+ GK+  A
Sbjct: 844  GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA 903

Query: 330  ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            +++   M+  G+ PD  TY +++DC C NG  +    ++++++       + TYN ++ G
Sbjct: 904  QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 963

Query: 390  LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            LC+  +LK A  L  ++   GV PD I Y  ++ G C+ G   + DKL
Sbjct: 964  LCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 1011



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 176/321 (54%), Gaps = 6/321 (1%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + +  Y ++ + G S  +Y F +L+H  C+  ++  A  +  +  K G   + V+  +L+
Sbjct: 622 IVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLL 681

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG C+     E   L   M+G G  P+V  Y+ +INGLCK   L++A  + + M ++G+ 
Sbjct: 682 NGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIR 741

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
            + V + TLI G   +GR        +A +++ +M    ++P+ I +T L+D F KEG+L
Sbjct: 742 ADAVTYNTLISGLSNSGR------WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 795

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A ++ KEMI+R +  +   + +LI+GFC  G + +A+ M   M+  G  PD  TY  +
Sbjct: 796 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 855

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I  FCK+   + G +L  EM   G +    TYN L++G C+ G+L  A  + + M+D GV
Sbjct: 856 ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 915

Query: 412 VPDDITYNILLEGHCKHGNPE 432
            PD +TYNILL+  C +G  E
Sbjct: 916 SPDIVTYNILLDCLCNNGKIE 936



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 174/324 (53%), Gaps = 9/324 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P+V V+N L+  LCK G++  A  + +E  K+GL A  V++NTL+ G C +    + 
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+   M    + PDV T++ALI+   K+  LD+A+ L  EM +  + PN+V + ++I+G
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C +GR      + +A+K  D M + G  P+ +TY  L+ GFCK   ++  + + + M  
Sbjct: 291 LCMHGR------LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G   D   +  LI G+C+ GK+  A  +   M+   + PD  T+ +++   C NG+ ++
Sbjct: 345 EGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                 +MR       +  YN +++GLCK  +++ A  L   +   GV PD  TY I++ 
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMIL 464

Query: 424 GHCKHGNPEDFDKL---QSEKGLV 444
           G CK+G   + D+L     E+G++
Sbjct: 465 GLCKNGPRREADELIRRMKEEGII 488



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 162/314 (51%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           + +DA  +F E        + V F  L+      +  +        ME  G+  D+Y+++
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+ +RL  A  +L +M + G  P+ V F +L+ G C   RI   GD   A  +V
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRI---GD---AFSLV 164

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
             M  +G  P+ + Y  L+DG CK G+L  AL++  EM K+G+  D V +  L++G C  
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A RMLR+M+K  + PD  T+T +ID F K G+      L KEM      P   TY
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           N+++NGLC HG+L +A    D M   G  P+ +TYN L+ G CK    ++  KL    S 
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 441 KGLVSDYACYTSLV 454
           +G  +D   Y +L+
Sbjct: 345 EGFNADIFTYNTLI 358



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 163/314 (51%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F E  +     + V F  ++    K    D    L   ME  G+  D+Y+++
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 643

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+ +RL  A  LL +M + G  P+ V   +L++G C+  R       +EA  +V
Sbjct: 644 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNR------FQEAVSLV 697

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M   G  P+ + Y  +++G CK  DL +AL++   M K+GI  D V +  LISG    
Sbjct: 698 DSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNS 757

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A R+LR+M+K  + P+   +T +ID F K G+      L KEM     +P V TY
Sbjct: 758 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 817

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           N+L+NG C HG L +A  + D M+  G  PD +TYN L+ G CK    ED  KL  E   
Sbjct: 818 NSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY 877

Query: 441 KGLVSDYACYTSLV 454
           +GLV D   Y +L+
Sbjct: 878 QGLVGDAFTYNTLI 891



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 160/310 (51%), Gaps = 6/310 (1%)

Query: 75   LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
            L++A++ F  + K   R  A     LI  +  +   T       +++     P+V  F  
Sbjct: 725  LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 784

Query: 135  LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
            L+    KEG + +A+ ++ E  +R +     ++N+LING C    L +   +  +M   G
Sbjct: 785  LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 844

Query: 195  MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              PDV TY+ LI G CK  R++D   L  EM  +GL  +   + TLI G+C+ G++++A 
Sbjct: 845  CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA- 903

Query: 255  DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
                 +K+ + M   G++PD +TY ILLD  C  G +E AL + +++ K  +++D + + 
Sbjct: 904  -----QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN 958

Query: 315  ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
             +I G CR  K+ EA  + R + + G+KPD   Y  +I   C+ G  +   +L + M+ D
Sbjct: 959  IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 1018

Query: 375  GHLPAVETYN 384
            G +P+   Y+
Sbjct: 1019 GFMPSERIYD 1028



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 156/338 (46%), Gaps = 41/338 (12%)

Query: 123  YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING--------- 173
            +G+ P+V ++N +++ LCK   + +A  VF    K+G+ A AV++NTLI+G         
Sbjct: 703  FGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTD 762

Query: 174  --------------------------HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
                                        K  NL E   L   M    + P+V+TY++LIN
Sbjct: 763  AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 822

Query: 208  GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
            G C    L DA+ +   M  +G  P+ V + TLI G CK+ R++      +  K+  EM 
Sbjct: 823  GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE------DGMKLFCEMT 876

Query: 268  TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
              GL  D  TY  L+ G+C+ G L  A  +   M+  G+  D V +  L+   C  GK+ 
Sbjct: 877  YQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIE 936

Query: 328  EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            +A  M+ ++ K  +  D  TY ++I   C+    K  + L + +   G  P    Y  ++
Sbjct: 937  KALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMI 996

Query: 388  NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +GLC+ G  + A+ L   M + G +P +  Y+  L  H
Sbjct: 997  SGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDH 1034



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 156/299 (52%), Gaps = 6/299 (2%)

Query: 50   LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
            +E +G     +  + L+    + G   DA +  R + K            LID  ++   
Sbjct: 735  MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 794

Query: 110  PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                   Y E++     P+V+ +N L++  C  G + DA+ +FD    +G     V++NT
Sbjct: 795  LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 854

Query: 170  LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
            LI G CK+K +++G +L   M   G+  D +TY+ LI+G C+  +L+ A+ + + M + G
Sbjct: 855  LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 914

Query: 230  LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
            ++P+ V +  L+D  C NG+I+      +A  +V+++  + ++ D ITY I++ G C+  
Sbjct: 915  VSPDIVTYNILLDCLCNNGKIE------KALVMVEDLQKSEMDVDIITYNIIIQGLCRTD 968

Query: 290  DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             L+ A  + + + ++G++ D +A+  +ISG CR G   EA+++ R M + G  P +  Y
Sbjct: 969  KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 1027



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 157/337 (46%), Gaps = 31/337 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++  L  +   + A +LL+ +  KKG+G+          T  T L GL        
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEM-EKKGLGADVV-------TYNTLLTGLCYS----- 224

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G   DA +  R + K            LID  ++          Y E++     P+
Sbjct: 225 ----GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
              +N +++ LC  G++ DA+  FD    +G     V++NTLI+G CK + +DEG +L  
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQ 340

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G   D++TY+ LI+G C+  +L  A  +   M  R +TP+ +    L+ G C NG
Sbjct: 341 RMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNG 400

Query: 249 RIDMA----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            I+ A     DM+E+ K +      G+    + Y I++ G CK   +E A ++   +   
Sbjct: 401 EIESALVKFDDMRESEKYI------GI----VAYNIMIHGLCKADKVEKAWELFCRLPVE 450

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           G++ D   +T +I G C+ G   EA+ ++R M + G+
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 67/125 (53%)

Query: 120  ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
            ++D G SP +  +N+L+  LC  GKI+ A ++ ++  K  +    +++N +I G C+   
Sbjct: 910  MVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDK 969

Query: 180  LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            L E + L   +   G++PD   Y  +I+GLC++    +A+ L   M E G  P++ I+  
Sbjct: 970  LKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDE 1029

Query: 240  LIDGH 244
             +  H
Sbjct: 1030 TLRDH 1034


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 185/330 (56%), Gaps = 13/330 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           YG S  +Y F +L+H  C+  ++  A  V  +  K G   + V+F +L++G C    + +
Sbjct: 100 YGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGD 159

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            F L  +M  SG  P+V  Y+ LI+GLCK   L+ A  LL+EM ++GL  + V + TL+ 
Sbjct: 160 AFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLT 219

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C +GR        +A +++ +M    +NPD +T+T L+D F K+G+L+ A ++ KEMI
Sbjct: 220 GLCYSGR------WSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMI 273

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +  ++ +NV + ++I+G C  G++ +A++    M   G  P+  TY  +I  FCK     
Sbjct: 274 QSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVD 333

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            G +L + M  +G    + TYN L++G C+ G+L+ A  +   M+   V PD IT+ ILL
Sbjct: 334 EGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILL 393

Query: 423 EGHCKHGNPED----FDKL-QSEK--GLVS 445
            G C +G  E     FD + +SEK  G+V+
Sbjct: 394 HGLCVNGEIESALVKFDDMRESEKYIGIVA 423



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 174/324 (53%), Gaps = 9/324 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P+V V+N L+  LCK G++  A  + +E  K+GL A  V++NTL+ G C +    + 
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+   M    + PDV T++ALI+   K+  LD+A+ L  EM +  + PN+V + ++I+G
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C +GR      + +A+K  D M + G  P+ +TY  L+ GFCK   ++  + + + M  
Sbjct: 291 LCMHGR------LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G   D   +  LI G+C+ GK+  A  +   M+   + PD  T+ +++   C NG+ ++
Sbjct: 345 EGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                 +MR       +  YN +++GLCK  +++ A  L   +   GV PD  TY I++ 
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMIL 464

Query: 424 GHCKHGNPEDFDKL---QSEKGLV 444
           G CK+G   + D+L     E+G++
Sbjct: 465 GLCKNGPRREADELIRRMKEEGII 488



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 162/314 (51%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           + +DA  +F E        + V F  L+      +  +        ME  G+  D+Y+++
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+ +RL  A  +L +M + G  P+ V F +L+ G C   RI   GD   A  +V
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRI---GD---AFSLV 164

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
             M  +G  P+ + Y  L+DG CK G+L  AL++  EM K+G+  D V +  L++G C  
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A RMLR+M+K  + PD  T+T +ID F K G+      L KEM      P   TY
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           N+++NGLC HG+L +A    D M   G  P+ +TYN L+ G CK    ++  KL    S 
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 441 KGLVSDYACYTSLV 454
           +G  +D   Y +L+
Sbjct: 345 EGFNADIFTYNTLI 358



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 157/337 (46%), Gaps = 31/337 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++  L  +   + A +LL+ +  KKG+G+          T  T L GL        
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEM-EKKGLGADVV-------TYNTLLTGLCYS----- 224

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G   DA +  R + K            LID  ++          Y E++     P+
Sbjct: 225 ----GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
              +N +++ LC  G++ DA+  FD    +G     V++NTLI+G CK + +DEG +L  
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQ 340

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G   D++TY+ LI+G C+  +L  A  +   M  R +TP+ +    L+ G C NG
Sbjct: 341 RMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNG 400

Query: 249 RIDMA----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            I+ A     DM+E+ K +      G+    + Y I++ G CK   +E A ++   +   
Sbjct: 401 EIESALVKFDDMRESEKYI------GI----VAYNIMIHGLCKADKVEKAWELFCRLPVE 450

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           G++ D   +T +I G C+ G   EA+ ++R M + G+
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 200/410 (48%), Gaps = 9/410 (2%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G  + A LF   +   G HL  +    L+     +G    A+Q  R +            
Sbjct: 137 GKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMY 196

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             +ID + +  L T   G Y E++     P+V  F+ L++  C  GK KDA  +F+E   
Sbjct: 197 STIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVM 256

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           + ++  A +FN L++  CK   + E   + +VM   G+ P V TY+ L++G C  N +  
Sbjct: 257 KNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGK 316

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ +L  +    + PN   +  +I+G CK   +D      EA  +  EMC  G+ P K+T
Sbjct: 317 AKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVD------EALCLFHEMCCRGIAPHKVT 370

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L+DG CK G +  A ++  EM    I  D V + +LI  FC+   V +A  +++++ 
Sbjct: 371 YNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIK 430

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G++P+  TY ++ID  CK G  K    + +++   G+     TYN ++NGLCK G   
Sbjct: 431 EHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFD 490

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
            A +LL  M D G++PD +TY  +++        E   KL  E   KG+V
Sbjct: 491 EAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVV 540



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 190/408 (46%), Gaps = 47/408 (11%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFL-DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT--NL 109
           R + +P        ++ +  GF+ D+A+  F  +R+            ++  +++T  + 
Sbjct: 24  RRSPMPSSAEPLKTVLSIPNGFVVDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTKNHY 83

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           PTV L    ++   G  P ++  ++L++  C  G++  A  VF +  K GL         
Sbjct: 84  PTV-LSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGL--------- 133

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
                C    ++E       +   G   +  TY  LINGLCK  +   A  +L ++  + 
Sbjct: 134 -----CLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKL 188

Query: 230 LTPNDVIFTTLIDGHCKNGRID-----------------------------MAGDMKEAR 260
           +  N V+++T+IDG CK+  +                              + G  K+A 
Sbjct: 189 VNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAF 248

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++ +EM    +NPD  T+ IL+D  CKEG ++ A ++   M+K G+E   V +  L+ G+
Sbjct: 249 RLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGY 308

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C   +V +A+ +L  + ++ + P+  +Y ++I+ FCK         L  EM   G  P  
Sbjct: 309 CLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHK 368

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            TYN+L++GLCK G++  A  L+D M +  +  D +TYN L++  CK+
Sbjct: 369 VTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKN 416


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 178/336 (52%), Gaps = 9/336 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           + +  E+  +G  P   ++ +++   C+ G + DA  V DE    G     V++NTL+NG
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK + L +   L + M   G+ PD+ T++ LI+G C E +LD A  L   M  + L P+
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V + TLIDG C+ G +D A D+       D+M +  + P+ +TY+IL+D  C++G +E 
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDL------WDDMHSREIFPNHVTYSILIDSHCEKGQVED 174

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A     EMI +GI  + + + ++I G+CR G V + ++ L++M+   + PD  TY  +I 
Sbjct: 175 AFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIH 234

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            + K       F+LL  M  +   P V TYN L+NG   HG ++ A  + + M   G+ P
Sbjct: 235 GYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEP 294

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           D  TY  ++ GH   GN ++  +L  E   +G   D
Sbjct: 295 DRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 6/297 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P V  +N L++ LCKE ++ DA+ + +E  +RG+     +F TLI+G+C   
Sbjct: 41  EMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 100

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD+  +L   M    +RPD+ TY+ LI+G+C++  LD A  L  +M  R + PN V ++
Sbjct: 101 KLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYS 160

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID HC+ G+++      +A   +DEM   G+ P+ +TY  ++ G+C+ G++       
Sbjct: 161 ILIDSHCEKGQVE------DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 214

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+   +  D + +  LI G+ +  K+ +A ++L  M K  ++PD  TY M+I+ F  +
Sbjct: 215 QKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVH 274

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           G+ +    + ++M + G  P   TY +++NG    G  K A  L D ML  G  PDD
Sbjct: 275 GNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 331



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 12/211 (5%)

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   GL PD + YT+++ GFC+ G +  AL +R EM+  G   D V +  L++G C+  
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++++AE +L EM + G+ PD  T+T +I  +C  G      +L   M +    P + TYN
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 125

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
            L++G+C+ G L  AN L D M    + P+ +TY+IL++ HC+ G  ED      E   K
Sbjct: 126 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 185

Query: 442 GLVSDYACYTSL---------VSKSSKYRQK 463
           G++ +   Y S+         VSK  K+ QK
Sbjct: 186 GILPNIMTYNSIIKGYCRSGNVSKGQKFLQK 216


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 183/349 (52%), Gaps = 18/349 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           CRC      +T      LG   +++  GY P    FN L+  L  EGK+ +A ++ D   
Sbjct: 134 CRCC-----KTCFAYSVLG---KVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G     V++N+++NG C++ +      L   ME   ++ DV+TYS +I+ LC++  +D
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L  EM  +G+  + V + +L+ G CK      AG   +   ++ +M +  + P+ I
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCK------AGKWNDGALLLKDMVSREIVPNVI 299

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+ +LLD F KEG L+ A ++ KEMI RGI  + + +  L+ G+C   ++ EA  ML  M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           ++    PD  T+T +I  +C       G ++ + +   G +    TY+ L+ G C+ G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           K A  L   M+  GV+PD +TY ILL+G C +G  E     F+ LQ  K
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 190/376 (50%), Gaps = 41/376 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +++ + R+   ++ L    ++ +      V+ ++ ++  LC++G I  A  +F E   +G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + ++ V++N+L+ G CKA   ++G  L   M    + P+V T++ L++   KE +L +A 
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  RG++PN + + TL+DG+C   R      + EA  ++D M  N  +PD +T+T
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNR------LSEANNMLDLMVRNKCSPDIVTFT 372

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G+C    ++  + + + + KRG+  + V ++ L+ GFC+ GK+  AE + +EM+  
Sbjct: 373 SLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSH 432

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD------------------------- 374
           G+ PD  TY +++D  C NG  +    + ++++                           
Sbjct: 433 GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDA 492

Query: 375 ----------GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                     G  P V TY  +++GLCK G L  AN+LL  M + G  P+D TYN L+  
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 425 HCKHGNPEDFDKLQSE 440
           H + G+     KL  E
Sbjct: 553 HLRDGDLTASAKLIEE 568



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 167/297 (56%), Gaps = 6/297 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FNVL+    KEGK+++A  ++ E   RG+    +++NTL++G+C    L E   +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M  +   PD+ T+++LI G C   R+DD   +   + +RGL  N V ++ L+ G C+
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G+I      K A ++  EM ++G+ PD +TY ILLDG C  G LE AL+I +++ K  +
Sbjct: 416 SGKI------KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +L  V +T +I G C+GGKV +A  +   +   G+KP+  TYT++I   CK G       
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           LL++M  DG+ P   TYN L+    + G L  +  L++ M   G   D  +  ++++
Sbjct: 530 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 154/314 (49%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F E  +     + V F+   +   + K  +        +E +G+  ++YT +
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +IN  C+  +   A  +L ++ + G  P+   F TLI G      + + G + EA  +V
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKG------LFLEGKVSEAVVLV 181

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M  NG  PD +TY  +++G C+ GD   ALD+ ++M +R ++ D   ++ +I   CR 
Sbjct: 182 DRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 241

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G +  A  + +EM   G+K    TY  ++   CK G    G  LLK+M S   +P V T+
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK---LQSE 440
           N L++   K G+L+ AN L   M+  G+ P+ ITYN L++G+C      + +    L   
Sbjct: 302 NVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR 361

Query: 441 KGLVSDYACYTSLV 454
                D   +TSL+
Sbjct: 362 NKCSPDIVTFTSLI 375



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 50  LETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           L  R    P +V   +L+  Y  +  +DD ++ FR + K      A     L+    ++ 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              +    + E++ +G  P V  + +L+  LC  GK++ A  +F++  K  +    V + 
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           T+I G CK   +++ + L   +   G++P+V TY+ +I+GLCK+  L +A +LL +M E 
Sbjct: 478 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           G  PND  + TLI  H ++      GD+  + K+++EM + G + D  +  +++D
Sbjct: 538 GNAPNDCTYNTLIRAHLRD------GDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G++LD L     D G L+ A++ F  L+K    +       +I+ M +          + 
Sbjct: 442 GILLDGL----CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            +   G  P+V  + V++  LCK+G + +A ++  +  + G      ++NTLI  H +  
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDG 557

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           +L    +L   M+  G   D  +   +I+ L
Sbjct: 558 DLTASAKLIEEMKSCGFSADASSIKMVIDML 588


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 182/354 (51%), Gaps = 29/354 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++L +G  P+V  +NVL+  LC+ G++ +   V DE   R +     +++ L +GH 
Sbjct: 245 LWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHS 304

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +  +      L       G++   YT S L+NGLCK+ ++  AE +L  +   GL    V
Sbjct: 305 RTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTV 364

Query: 236 IFTTLIDGHCKNGRIDMA----GDMK-------------------------EARKIVDEM 266
           I+ TLI+G+C+ G ++ A      MK                         EA  +V EM
Sbjct: 365 IYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEM 424

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
             NG+NP   T+  L+D + + G LE    I  +M ++G++ + V++ ++++ FC+ GK+
Sbjct: 425 EKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKI 484

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
           +EA  +L +M    + P    Y  +ID + + G T   F L ++M+S G  P++ TYN L
Sbjct: 485 LEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLL 544

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           + GLCK  Q+  A  LLD++ + G+ PD I+YN L+   C   N +   +L+ E
Sbjct: 545 IKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKE 598



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 191/401 (47%), Gaps = 67/401 (16%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D   +P+ + +NV++  L K G   DA  +FDE  ++ +    +++NT+I+GH K  +L+
Sbjct: 181 DGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLE 240

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
            GFRL S M   G++P+V TY+ L++GLC+  R+ +   +L EM  R + P+   ++ L 
Sbjct: 241 SGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILF 300

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DGH + G                                  G + +A +++  +  +GL 
Sbjct: 301 DGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLL 360

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
              + Y  L++G+C+ GDLE A  I ++M  R I  D++ + ALI+G  +  ++ EA  +
Sbjct: 361 QTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDL 420

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           + EM K G+ P   T+  +ID + + G  +  F +L +M+  G  P V +Y +++N  CK
Sbjct: 421 VIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCK 480

Query: 393 HGQLKNANMLLDTML-----------------------------------DLGVVPDDIT 417
           +G++  A  +LD M                                      GV P  +T
Sbjct: 481 NGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVT 540

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           YN+L++G CK     + ++L       GL  D   Y +L+S
Sbjct: 541 YNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLIS 581



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 181/392 (46%), Gaps = 45/392 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D   RT      L  + E +  G     Y  ++L++ LCK+GKI  A+ V       G
Sbjct: 299 LFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSG 358

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+  +L+  F +   M+   +RPD  TY+ALINGL K  R+ +A 
Sbjct: 359 LLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAH 418

Query: 220 -----------------------------------LLLHEMCERGLTPNDVIFTTLIDGH 244
                                              ++L +M E+GL PN V + ++++  
Sbjct: 419 DLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAF 478

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CKNG+I       EA  I+D+M    + P    Y  ++D + + G  + A  + ++M   
Sbjct: 479 CKNGKI------LEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSS 532

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+    V +  LI G C+  ++ EAE +L  +   GL PD  +Y  +I   C   +T   
Sbjct: 533 GVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRA 592

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             L KEM   G  P+  TY  L + L   G++     L   MLD  VVP    YNI+++ 
Sbjct: 593 LELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDA 652

Query: 425 HCKHGNPEDFDKLQ---SEKGL-VSDYACYTS 452
           + K G     + L+   S+KG+ V DY   T+
Sbjct: 653 YAKCGEESKVEALRKEMSDKGIAVGDYTSMTN 684



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 168/350 (48%), Gaps = 33/350 (9%)

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPDVYT 201
           G+  D +  F+            ++N  +     A +LDE   +   M   G   P+ ++
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM--------- 252
           Y+ +I GL K     DA  L  EM E+ + PN + + T+IDGH K G ++          
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 253 --------------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
                               AG M E   ++DEM +  + PD  TY+IL DG  + GD +
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQ 310

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           + L + +E +K+G+++     + L++G C+ GK+ +AE +L+ ++  GL      Y  +I
Sbjct: 311 TMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLI 370

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + +C+ GD +  F + ++M+S    P   TYNAL+NGL K  ++  A+ L+  M   GV 
Sbjct: 371 NGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVN 430

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           P   T+N L++ + + G  E    + S   EKGL  +   Y S+V+   K
Sbjct: 431 PSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCK 480



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 158/353 (44%), Gaps = 8/353 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  S A      L   G     ++ + L+  Y  +G L+ A   F+ ++    R    
Sbjct: 340 KDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHI 399

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+ + +    T      +E+   G +PSV  FN L+    + G+++   ++  + 
Sbjct: 400 TYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDM 459

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            ++GL    VS+ +++N  CK   + E   +   M    + P    Y+A+I+   +    
Sbjct: 460 QEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGST 519

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A +L  +M   G+ P+ V +  LI G CK  +I       EA +++D +   GL PD 
Sbjct: 520 DQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQI------SEAEELLDSLRNYGLAPDV 573

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           I+Y  L+   C   + + AL++ KEM K GI+     +  L S     G+V E E + ++
Sbjct: 574 ISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQ 633

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           ML   + P    Y +++D + K G+      L KEM   G   AV  Y ++ N
Sbjct: 634 MLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGI--AVGDYTSMTN 684


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 183/370 (49%), Gaps = 44/370 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +PS+  +N ++   CK+G + DA  V +   + GL   A+++  L+ G  K  + +  
Sbjct: 461 GITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHA 520

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F +   M  +G+ P  YT++++INGLCK  R+ +A   L+   ++   P  + +  +IDG
Sbjct: 521 FNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDG 580

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K G ID       A  +  EMC + ++P+ ITYT L++GFCK   ++ AL +  +M +
Sbjct: 581 YVKEGAID------SAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKR 634

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-------------------- 343
           +G+ELD   +  LI+GFC+   +  A +   ++L+VGL P                    
Sbjct: 635 KGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEA 694

Query: 344 ---------------DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
                          D   YT +ID   K G       L  EM   G +P +  YN L+N
Sbjct: 695 ALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLIN 754

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLC HGQL+NA  +L  M    + P  + YN L+ GH K GN ++  +L  E   KGLV 
Sbjct: 755 GLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVP 814

Query: 446 DYACYTSLVS 455
           D   Y  LV+
Sbjct: 815 DDTTYDILVN 824



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 172/306 (56%), Gaps = 6/306 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G  P+ Y FN +++ LCK G++ +A+   + F K+    T++++N +I+G+ K  
Sbjct: 526 QMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEG 585

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D    +   M  S + P+V TY++LING CK N++D A  +  +M  +GL  +  ++ 
Sbjct: 586 AIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYA 645

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G CK        DM+ A K   ++   GL P+ I Y I++  +    ++E+AL++ 
Sbjct: 646 TLIAGFCK------MQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLH 699

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEMI   I  D   +T+LI G  + GK+  A  +  EML  G+ PD   Y ++I+  C +
Sbjct: 700 KEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNH 759

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +   ++LKEM  +   P V  YN L+ G  K G L+ A  L D MLD G+VPDD TY
Sbjct: 760 GQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTY 819

Query: 419 NILLEG 424
           +IL+ G
Sbjct: 820 DILVNG 825



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 201/465 (43%), Gaps = 106/465 (22%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE----- 154
           L+   +R N  T  +  +  +L+ G  P V   NVL+  + +   ++DA  +FDE     
Sbjct: 158 LLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERR 217

Query: 155 ---------------------------FGK---RGLHATAVSFNTLINGHCKAKNLD--- 181
                                      FG+   RGL   A S++ +I   C+  +LD   
Sbjct: 218 IYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLAS 277

Query: 182 --------------------------------EGFRLKSVMEGSGMRPDVYTYSALINGL 209
                                           E  RLK  M  S +  +V   ++LI G 
Sbjct: 278 KLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGY 337

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD-------------- 255
           C    ++ A  L  E+ E G+TPN  IF+ LI+   K G ++ A +              
Sbjct: 338 CVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTV 397

Query: 256 ---------------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
                          ++ A  ++D    NG+    +TY I+L   C+ G +  A ++  +
Sbjct: 398 FILNFLLKGFRKQNLLENAYLLLDGAVENGI-ASVVTYNIVLLWLCELGKVNEACNLWDK 456

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           MI +GI    V++  +I G C+ G + +A  ++  +++ GLKP+  TYT++++   K GD
Sbjct: 457 MIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGD 516

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +  F +  +M + G +P   T+N+++NGLCK G++  A   L+T +    +P  +TYN 
Sbjct: 517 CEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNC 576

Query: 421 LLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS---KSSK 459
           +++G+ K G  +  + +  E     +  +   YTSL++   KS+K
Sbjct: 577 IIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNK 621



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 44/375 (11%)

Query: 123 YGYSPS-VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           YG+  S   VFN L+    +  KI +A   F    + G+       N L+    +   ++
Sbjct: 145 YGFKLSDSRVFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVE 204

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  RL   M    +  D YT   L+    K  +  +AE    +   RGL  +   ++ +I
Sbjct: 205 DAHRLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVI 264

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
              C+   +D+A  + E  + +      G  P + TY  ++    + G+   AL ++ EM
Sbjct: 265 QAVCRGSDLDLASKLVEGDEEL------GWVPSEGTYAAVIGACVRLGNFGEALRLKDEM 318

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +   + ++    T+LI G+C  G V  A R+  E+++VG+ P+ A ++++I+   K G+ 
Sbjct: 319 VDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNV 378

Query: 362 KTGFRLLKEMRSDGHLP----------------------------------AVETYNALM 387
           +    L   M+  G  P                                  +V TYN ++
Sbjct: 379 EKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVL 438

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLV 444
             LC+ G++  A  L D M+  G+ P  ++YN ++ GHCK G  +D  ++ +   E GL 
Sbjct: 439 LWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLK 498

Query: 445 SDYACYTSLVSKSSK 459
            +   YT L+  S K
Sbjct: 499 PNAITYTILMEGSFK 513



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           + M ++   F+ +LE   T  P  ++  +MI  Y +L  ++ A+   + +  +      +
Sbjct: 655 QDMENACKFFSKLLEVGLT--PNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLK 712

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LID +++    +  L  Y E+L  G  P ++++NVL++ LC  G++++A  +  E 
Sbjct: 713 IYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEM 772

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
               +  T + +NTLI GH K  NL E FRL   M   G+ PD  TY  L+NG
Sbjct: 773 DGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+++      + ++  L+  L KEGK+  A  ++ E   RG+      +N LIN
Sbjct: 695 ALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLIN 754

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C    L+   ++   M+G+ + P V  Y+ LI G  KE  L +A  L  EM ++GL P
Sbjct: 755 GLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVP 814

Query: 233 NDVIFTTLIDG 243
           +D  +  L++G
Sbjct: 815 DDTTYDILVNG 825


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 177/349 (50%), Gaps = 41/349 (11%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++++G+ P ++ +N+LMH LCKEG +  A+ + +E  +RG     +++  L+NG CKA  
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 180 LDE-----------GFRLKSV------------------------MEGSGMRPDVYTYSA 204
           L+E           G  + SV                        M   G +PD++TY++
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNS 500

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LI GLCK +R+D+A  L H M   G   N+V + TLI    + G        ++A  +V+
Sbjct: 501 LIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGA------FQKALTLVN 554

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G   DKITY  L+  FCK G++E  L++ ++MI  G+  D ++   +I+G C+ G
Sbjct: 555 DMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVG 614

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           KV  A   LR+ +  G  PD  TY  V++  CK G  K    L   ++ +G  P   TYN
Sbjct: 615 KVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYN 674

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
             ++  CK G + +A       ++ G VP ++T+N+L+    K  N E+
Sbjct: 675 TFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 191/433 (44%), Gaps = 82/433 (18%)

Query: 82  FRLLRKHYFRI--PARGCRCLIDR-------------------MMRTNLPTVTLGFYLEI 120
           F ++ KHY +   P +  R L+D                    ++  N P V    + ++
Sbjct: 150 FMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDM 209

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G SP+V+ F ++M  LC   ++  A  +  +  K G    ++ + TLI+   +   +
Sbjct: 210 LSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQV 269

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E  +L   M   G  PDV T++ +I+GLCK N++ DA  L+  M  RG  P+++ +  L
Sbjct: 270 SEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL 329

Query: 241 IDGHCKNGRID-------------------------MAGDMKEA---------------- 259
           + G C+ G+++                         M+G +KEA                
Sbjct: 330 LHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPD 389

Query: 260 --------------------RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                               R +V+EM   G  P+ ITY IL++G CK G LE A  +  
Sbjct: 390 IFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLH 449

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  RG+ +++V +  LI   CR  KV  A  +L EM   G KPD  TY  +I   CK  
Sbjct: 450 EMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVD 509

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                FRL   M  DG +    TYN L++ L + G  + A  L++ ML  G   D ITYN
Sbjct: 510 RIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 420 ILLEGHCKHGNPE 432
            L++  CK GN E
Sbjct: 570 GLIKAFCKVGNIE 582



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 137/269 (50%), Gaps = 14/269 (5%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+ P V+T+  ++  LC  N +D A  LL +M + G  PN +++ TLI    +  +
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQ 268

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +       EA K+++EM   G  PD  T+  ++ G CK   +  A  +   M+ RG   D
Sbjct: 269 VS------EALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPD 322

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           N+ +  L+ G CR GK+ EA ++L   +K+   P++A    +I+ +  +G  K     L 
Sbjct: 323 NMTYGFLLHGLCRIGKLNEARKIL---IKIPC-PNNAILNTLINGYVMSGQLKEAQSFLN 378

Query: 370 E-MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           E M + G  P + TYN LM+GLCK G L  A  L++ M   G  P+ ITY IL+ G CK 
Sbjct: 379 ETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKA 438

Query: 429 GNPEDFDKL---QSEKGLVSDYACYTSLV 454
           G  E+   +    S +GL  +   Y  L+
Sbjct: 439 GLLEEAGLVLHEMSARGLTINSVIYNCLI 467



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 160/369 (43%), Gaps = 23/369 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+  +  Y+ ++H L      S ARDL++ + S++G   +   +A ++        GL  
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGCEPNVITYAILVN-------GLC- 436

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
                     G L++A      +      I +    CLI  + R     V L    E+  
Sbjct: 437 --------KAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCT 488

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P ++ +N L++ LCK  +I +A  +F      G  A  V++NTLI+   +     +
Sbjct: 489 KGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQK 548

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + M   G   D  TY+ LI   CK   ++    L  +M   GL  + +    +I+
Sbjct: 549 ALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMIN 608

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK G++D       A + + +    G  PD +TY  +L+G CK G ++ AL++   + 
Sbjct: 609 GLCKVGKVD------NAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQ 662

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G+  D   +   IS  C+ G V +A       ++ G  P + T+ +++    K  + +
Sbjct: 663 VEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQE 722

Query: 363 TGFRLLKEM 371
             F +L E+
Sbjct: 723 NNFFVLDEL 731



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 13/241 (5%)

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR----IDMAGDM 256
            Y   IN L    +    + LL +M E G+   + IF  ++  + K G+    I +  DM
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           +        +C        +   IL+ G C +     A ++  +M+ +G+      F  +
Sbjct: 174 RAVY-----LCEPTFKSYDLVLEILVTGNCPQ----VATNVFYDMLSKGVSPTVFTFGIV 224

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +   C   +V  A  +LR+M K G  P+   Y  +I    +        +LL+EM   G 
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGC 284

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
           +P V+T+N +++GLCK  ++ +A  L+D ML  G  PD++TY  LL G C+ G   +  K
Sbjct: 285 MPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARK 344

Query: 437 L 437
           +
Sbjct: 345 I 345



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL-KPDDATYTMVIDCFCKN 358
           +M + GI      F  ++  + + G+  +A R+L +M  V L +P   +Y +V++     
Sbjct: 137 QMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTG 196

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +    +  +M S G  P V T+  +M  LC   ++ +A  LL  M   G VP+ I Y
Sbjct: 197 NCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVY 256

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
             L+    +     +  KL  E
Sbjct: 257 QTLIHALSQKNQVSEALKLLEE 278


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 176/361 (48%), Gaps = 46/361 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLD- 181
           G +P+ Y +  ++   CK G++ +A  VFDE   +G +   AV +N LI G+C    LD 
Sbjct: 176 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 235

Query: 182 ----------------------------------EGFRLKSVMEGSGMRPDVYTYSALIN 207
                                             E + L   M G G+ PDV+TY+ LIN
Sbjct: 236 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILIN 295

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G CKE  +  A  +   M  RG+    V +T LI    K G++      +E  K+ DE  
Sbjct: 296 GHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQV------QETDKLFDEAV 349

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G+ PD + Y  L++     G+++ A +I  EM K+ I  D+V +  L+ G C  G+V 
Sbjct: 350 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 409

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA +++ EM + G++PD  TY  +I  +   GD K   R+  EM + G  P + TYNAL+
Sbjct: 410 EARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALI 469

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDY 447
            GLCK+GQ  +A  ++  M++ G+ PDD TY  L+EG       ED   +  E+   +D 
Sbjct: 470 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTT----EDERAIDDERLAAADA 525

Query: 448 A 448
           A
Sbjct: 526 A 526



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 26/383 (6%)

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGF---------------YLEILDYGYSPSVYVFNVLM 136
           +P+     L   M R  LP  T  F                LE+L     P+   +N ++
Sbjct: 93  LPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 152

Query: 137 HKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG- 194
              C  G+++ A  +  E  +RG +     ++ T+I+G CK   +DE  ++   M   G 
Sbjct: 153 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 212

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           ++P+   Y+ALI G C + +LD A L    M ERG+      +  L+     +GR     
Sbjct: 213 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR----- 267

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA ++V+EM   GL PD  TY IL++G CKEG+++ AL+I + M +RG+    V +T
Sbjct: 268 -GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 326

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI    + G+V E +++  E ++ G++PD   Y  +I+    +G+    F ++ EM   
Sbjct: 327 ALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 386

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              P   TYN LM GLC  G++  A  L+D M + G+ PD +TYN L+ G+   G+ +D 
Sbjct: 387 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDA 446

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
            ++++E   KG       Y +L+
Sbjct: 447 LRIRNEMMNKGFNPTLLTYNALI 469



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 7/328 (2%)

Query: 69  YVDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +  +G +D+A++ F  +L K   +  A     LI            L +   +++ G + 
Sbjct: 191 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 250

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+L+H L  +G+  +A  + +E G +GL     ++N LINGHCK  N+ +   + 
Sbjct: 251 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 310

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+R  V TY+ALI  L K+ ++ + + L  E   RG+ P+ V++  LI+ H  +
Sbjct: 311 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 370

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G ID       A +I+ EM    + PD +TY  L+ G C  G ++ A  +  EM +RGI+
Sbjct: 371 GNID------RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 424

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V +  LISG+   G V +A R+  EM+  G  P   TY  +I   CKNG       +
Sbjct: 425 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 484

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +KEM  +G  P   TY +L+ GL    +
Sbjct: 485 VKEMVENGITPDDSTYISLIEGLTTEDE 512



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P +  +N L+     +G +KDA  + +E   +G + T +++N LI G CK  
Sbjct: 417 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 476

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR--LDDAEL 220
             D+   +   M  +G+ PD  TY +LI GL  E+   +DD  L
Sbjct: 477 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 520


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 167/324 (51%), Gaps = 6/324 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++L   ++P +  FN L++  C+ G I +A ++FDE   R L  T +++NTLI+G C 
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              LD   RLK  M   G+ PD++TY+ L+NG  K   +  A    +EM  +GL P+   
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T I G  K     +A  M+E      EM   G  PD ITY + +   C++G+ E A D
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQE------EMLAAGFPPDVITYNVFVHALCQQGNFEEACD 516

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + + M+  G+  D+V +T++I+GF + G + +A  +  EML  G+ P   TYT++I    
Sbjct: 517 LLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHA 576

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
                   F    +M        V TYNA++NGLC   ++  A    D M + G++P+  
Sbjct: 577 AKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKF 636

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE 440
           +Y IL+   C  G  E+  +L  E
Sbjct: 637 SYTILINESCNMGYWEEALRLYRE 660



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P+   +NVL++ L K+G+++ A+ + +E    GL+ +A ++N LING C+  
Sbjct: 240 EMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKG 299

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              E F L   M      P + TY+ L+ GLCK  ++    L   +M +   TP+ V F 
Sbjct: 300 LFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFN 359

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +L+ G+C+ G I       EA  + DE+    L P  ITY  L+ G C  G L++AL ++
Sbjct: 360 SLLYGYCRTGCIS------EAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLK 413

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM  +G+  D   +T L++G  + G V  A     EML  GLKPD   Y   I    K 
Sbjct: 414 KEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKI 473

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            DT   F + +EM + G  P V TYN  ++ LC+ G  + A  LL+ M+  G++PD +TY
Sbjct: 474 ADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTY 533

Query: 419 NILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLV 454
             ++ G  K+G+     E F+++ S KG+      YT L+
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLS-KGVAPSVVTYTVLI 572



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 162/312 (51%), Gaps = 8/312 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   E+L+ G + S Y +N L++  C++G   +A  + +E   R    T  ++NTL+ G 
Sbjct: 271 GLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGL 330

Query: 175 CKAKNLDEGFRLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           CK   +  G RL+ S M  S   PD+ ++++L+ G C+   + +A LL  E+  R L P 
Sbjct: 331 CKWVQVT-GVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPT 389

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + + TLI G C  G +D A  +K+      EM   GL PD  TYTIL++G  K G +  
Sbjct: 390 VITYNTLIHGLCMWGYLDAALRLKK------EMTDQGLFPDIFTYTILVNGCFKLGYVSM 443

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A     EM+ +G++ D  A+   I G  +      A  M  EML  G  PD  TY + + 
Sbjct: 444 ARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVH 503

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C+ G+ +    LL+ M SDG +P   TY +++NG  K+G L+ A  + + ML  GV P
Sbjct: 504 ALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 414 DDITYNILLEGH 425
             +TY +L+  H
Sbjct: 564 SVVTYTVLIHAH 575



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 145/280 (51%), Gaps = 6/280 (2%)

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           +VFD+  + GL     + N ++        L +   +  +ME  G++P V TY+ +++  
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           CKE R+D A  LL EM ERG  PNDV +  L++G  K       G++++A+ +++EM  +
Sbjct: 226 CKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKK------GELEQAKGLIEEMLNS 279

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GLN    TY  L++GFC++G    A D+ +EM+ R        +  L+ G C+  +V   
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGV 339

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
                +MLK    PD  ++  ++  +C+ G     F L  E++    +P V TYN L++G
Sbjct: 340 RLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHG 399

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           LC  G L  A  L   M D G+ PD  TY IL+ G  K G
Sbjct: 400 LCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLG 439



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 146/278 (52%), Gaps = 6/278 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G  P ++ + +L++   K G +  A+  F+E   +GL     ++NT I G  K  
Sbjct: 415 EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIA 474

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +    F ++  M  +G  PDV TY+  ++ LC++   ++A  LL  M   GL P+ V +T
Sbjct: 475 DTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYT 534

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++I+G  KNG       +++AR++ +EM + G+ P  +TYT+L+     +  L+ A    
Sbjct: 535 SIINGFVKNGH------LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYF 588

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M+++ +  + + + A+I+G C   ++ EA +   EM + G+ P+  +YT++I+  C  
Sbjct: 589 SKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNM 648

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           G  +   RL +EM      P   T++  +  L +  Q+
Sbjct: 649 GYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 5/203 (2%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           + +A+ +   M   G+ P  +TY  +LD +CKEG ++ AL++  EM +RG   ++V +  
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++G  + G++ +A+ ++ EML  GL     TY  +I+ FC+ G     F L++EM +  
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRR 315

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
             P + TYN LM GLCK  Q+    +    ML     PD +++N LL G+C+ G   +  
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAF 375

Query: 434 --FDKLQSEKGLVSDYACYTSLV 454
             FD+L+  + LV     Y +L+
Sbjct: 376 LLFDELKC-RDLVPTVITYNTLI 397



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 6/216 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           +V      E+L  G+ P V  +NV +H LC++G  ++A  + +     GL    V++ ++
Sbjct: 477 SVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ING  K  +L +   + + M   G+ P V TY+ LI+    +  LD A +   +M E+ +
Sbjct: 537 INGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV 596

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
             N + +  +I+G C   R+D      EA K  DEM   G+ P+K +YTIL++  C  G 
Sbjct: 597 PANVITYNAIINGLCMTRRMD------EAYKYFDEMEEKGILPNKFSYTILINESCNMGY 650

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
            E AL + +EM+ R I+ D+   +  +    R  +V
Sbjct: 651 WEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 197/385 (51%), Gaps = 9/385 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +DDA      L +H   + A     L+D   R        G   E+ + G  P+V  +
Sbjct: 162 GSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTY 221

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
            +L+  L + G I   + V+DE  ++ +      ++ +IN +C+  N+     +     G
Sbjct: 222 TILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVG 281

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P+  TY ALING CK  +++ AE+LL +M  RG+  N ++F T+IDG+C++G ++ 
Sbjct: 282 HGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEK 341

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A ++K    ++++M   G+  D  TY  L  G C+   +E A  +   M ++G+  + V+
Sbjct: 342 ALEIK---AVMEKM---GIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVS 395

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +T LIS   + G +VEA R+ R+M   G +P   TY ++ID + KNG  +   R  KEM 
Sbjct: 396 YTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEME 455

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G +P + TY  L++G C +G++  A  L + M   G  P+ + Y  L+ G  K G  E
Sbjct: 456 KKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSE 515

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
           +  +L  +    GL  D   Y+ LV
Sbjct: 516 EAFQLYDDMLAAGLTPDDTLYSVLV 540



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 154/272 (56%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E + +G  P+   +  L++  CK G+I+ A+M+  +   RG+    + FNT+I+G+C+  
Sbjct: 278 ECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHG 337

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++   +K+VME  G+  D+YTY+ L  GLC+ NR++DA+ LLH M E+G+ PN V +T
Sbjct: 338 MVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYT 397

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  H K G      DM EAR++  +M   G  P  +TY +++DG+ K G +  A   +
Sbjct: 398 TLISIHAKEG------DMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFK 451

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM K+G+  D   +  L+ G C  GKV  A R+  EM   G KP+   YT ++    K 
Sbjct: 452 KEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKE 511

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L  +M + G  P    Y+ L+  L
Sbjct: 512 GRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSL 543



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 177/365 (48%), Gaps = 44/365 (12%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           +V++   CK G + DA  + DE  + G+   A  +N+L++ + + +N D    L   ME 
Sbjct: 152 SVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMEN 211

Query: 193 SGMRP-----------------------------------DVYTYSALINGLCKENRLDD 217
            G+ P                                   DVY YSA+IN  C+   +  
Sbjct: 212 RGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRR 271

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  +  E    G+ PN+  +  LI+G CK G+I+ A        ++ +M   G+  ++I 
Sbjct: 272 ASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAA------EMLLADMQLRGVGHNQIV 325

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  ++DG+C+ G +E AL+I+  M K GIELD   +  L  G CR  ++ +A+++L  M 
Sbjct: 326 FNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMA 385

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G+ P+  +YT +I    K GD     RL ++M   G  P+V TYN +++G  K+G ++
Sbjct: 386 EKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIR 445

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            A      M   G+VPD  TY  L+ GHC +G  +   +L  E   +G   +   YT+LV
Sbjct: 446 EAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALV 505

Query: 455 SKSSK 459
           S  +K
Sbjct: 506 SGLAK 510



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 46/272 (16%)

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
           C   +TP  +  + ++DG CK+G +D      +A  ++DE+  +G+  +   Y  LLD +
Sbjct: 142 CPASVTP--LSASVVVDGFCKSGSVD------DAHGLLDELPRHGVGLNACCYNSLLDSY 193

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            ++ + ++   + KEM  RG+E     +T L+ G  R G + + E +  EM +  +  D 
Sbjct: 194 TRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDV 253

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             Y+ VI+ +C+ G+ +    +  E    G  P   TY AL+NG CK GQ++ A MLL  
Sbjct: 254 YFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLAD 313

Query: 406 MLDLGVVPDDITYNILLEGHCKHG-----------------------------------N 430
           M   GV  + I +N +++G+C+HG                                    
Sbjct: 314 MQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNR 373

Query: 431 PEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
            ED  KL    +EKG+  +Y  YT+L+S  +K
Sbjct: 374 MEDAKKLLHIMAEKGVAPNYVSYTTLISIHAK 405



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 71/128 (55%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PSV  +NV++    K G I++A+    E  K+GL     ++  L++GHC    +D  
Sbjct: 423 GSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVA 482

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL   M+  G +P+V  Y+AL++GL KE R ++A  L  +M   GLTP+D +++ L+  
Sbjct: 483 LRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGS 542

Query: 244 HCKNGRID 251
              + R D
Sbjct: 543 LHTDSRKD 550



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 17/214 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
             L ++ Y+T+   L        A+ LLH I+++KG+  +   + +++            
Sbjct: 354 IELDIYTYNTLACGLCRVNRMEDAKKLLH-IMAEKGVAPNYVSYTTLIS----------- 401

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
                ++   G + +A + FR +     R        +ID  ++         F  E+  
Sbjct: 402 -----IHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEK 456

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P +Y +  L+H  C  GK+  A  +F+E   RG     V++  L++G  K    +E
Sbjct: 457 KGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEE 516

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            F+L   M  +G+ PD   YS L+  L  ++R D
Sbjct: 517 AFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSRKD 550


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 180/339 (53%), Gaps = 20/339 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G SP+V  FNVL++  CKE  I  A  VF+E  + G+ A  V++ +L++G C+  
Sbjct: 251 EMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREG 310

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++  +L   ME  G+   + T ++++NG CK+  + +AE  +  M ++G+ PN V + 
Sbjct: 311 KVEDSMKLVEEMEELGL-ATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYN 369

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLIDG+ + G+      MKEA      M   G++PD  TY  L+ GF    D  S   + 
Sbjct: 370 TLIDGYQRLGK------MKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLL 423

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM + G++ D V +  LI   C  G+V +A ++L EM++VGL+P   TY  +I+ FC+ 
Sbjct: 424 DEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEK 483

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD K    +   M        V T N  +   CK G++  AN++L+ ML+ G+VP+ ITY
Sbjct: 484 GDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITY 543

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKS 457
            I+  G               EKG V D   Y + VSK+
Sbjct: 544 EIINSGMI-------------EKGYVPDIRGYAADVSKN 569



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 182/364 (50%), Gaps = 15/364 (4%)

Query: 100 LIDRMMRTNLPTVTLG-FYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           L+  + R + P    G F L   DY  Y PS +  N L+  L +  ++  A+  F    +
Sbjct: 122 LVLALARASQPLAAYGAFLLAGADYPRYRPSAFSVNALLAALVRADRVDLAERAFRAALR 181

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           R +     +FN +I+G CK   L +   +   M G G+ P V TY+ LI+G  K  R   
Sbjct: 182 RRVSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGK 241

Query: 218 ---AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
               ++LL EM + G++PN V F  LI+G+CK   I        A K+ +EM  +G+  +
Sbjct: 242 MYHVDMLLKEMNQAGISPNVVTFNVLINGYCKESNIT------AAIKVFEEMRQHGIPAN 295

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +TYT L+ G C+EG +E ++ + +EM + G+        ++++GFC+ G +VEAE  + 
Sbjct: 296 MVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLPT-LNSVLNGFCKKGMMVEAEGWVD 354

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M + G+KP+  TY  +ID + + G  K        M   G  P V+TYN L+ G     
Sbjct: 355 GMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTST 414

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYT 451
             ++ + LLD M + GV  D +TYN+L+   C  G      KL     E GL   +  Y 
Sbjct: 415 DWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYN 474

Query: 452 SLVS 455
           ++++
Sbjct: 475 AIIN 478



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KKGM   A  +   +  +G     +  + L+  Y  LG + +A      +         +
Sbjct: 342 KKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVK 401

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
              CLI     +       G   E+ + G    +  +NVL+  LC +G+++ A  + DE 
Sbjct: 402 TYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEM 461

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + GL     ++N +ING C+  +      ++  ME    R +V T +  +   CK  ++
Sbjct: 462 VEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKM 521

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           D+A ++L+EM E+GL PN + +  +  G  + G +
Sbjct: 522 DEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYV 556


>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 557

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 189/400 (47%), Gaps = 62/400 (15%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  +   +  LCK G +      F E  K G+    ++F  LI+G+ K  NLD  ++L
Sbjct: 74  PNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSKIGNLDFAYQL 133

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  S   P+VYTY+ALING CK   L+ AE    +M E G+ PN  ++T++IDGH K
Sbjct: 134 YKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSIIDGHFK 193

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
            G ID+A                             G + +  +++++M  NGL PDK+ 
Sbjct: 194 KGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVV 253

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELD---------------------------- 309
            T L+    K G+ ++A  + +E++ RG E D                            
Sbjct: 254 LTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYHDAKGYFCKEK 313

Query: 310 --NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
              V++TALI G C+ G + E ER++ EM + G  PD   YT  I   C+ G     F++
Sbjct: 314 ANEVSYTALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEAFKV 373

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             +M  +G    + TY++L+ GL   G +  A  L D ML  G++PD + ++IL+ G+ K
Sbjct: 374 KNKMVEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDILIRGYLK 433

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
             NP     L  E   +GL++      S  +++ ++  K+
Sbjct: 434 QDNPVAISHLHEEMRRRGLLTIDKITISFRNQTEEFVSKQ 473



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 159/365 (43%), Gaps = 59/365 (16%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G LD   + F+ +RK           CLID   +          Y ++    + P+VY 
Sbjct: 89  VGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSKIGNLDFAYQLYKDMCKSMHLPNVYT 148

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L++  CK G ++ A+  F +  + G+   +  + ++I+GH K  N+D   +  S M 
Sbjct: 149 YAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKYFSEMR 208

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL----------- 240
               R D+  Y  +I+GL    RLD    ++ +M   GL P+ V+ TTL           
Sbjct: 209 KESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMHAHFKAGNTK 268

Query: 241 ------------------------IDGHCKNGR------------------------IDM 252
                                   IDG CK+GR                        I  
Sbjct: 269 AAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYHDAKGYFCKEKANEVSYTALIDGICK 328

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            G++ E  ++V EM  +G  PDK  YT  +   C++G +  A  ++ +M++ GI+LD + 
Sbjct: 329 EGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLT 388

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +++LI G    G ++EA+++  +MLK G+ PD   + ++I  + K  +      L +EMR
Sbjct: 389 YSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDILIRGYLKQDNPVAISHLHEEMR 448

Query: 373 SDGHL 377
             G L
Sbjct: 449 RRGLL 453



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 94/203 (46%), Gaps = 36/203 (17%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD +TY  L+DG+CK G +E A    K +      +D V+F AL +GFC+     E    
Sbjct: 5   PDIVTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKRKMKEEVFIY 64

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG----------------- 375
           +  M K  L P+  TY   ID  CK GD  TG++  KEMR DG                 
Sbjct: 65  MGLMWKCCL-PNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSK 123

Query: 376 ------------------HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                             HLP V TY AL+NG CK G L+ A      ML++G++P+   
Sbjct: 124 IGNLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTV 183

Query: 418 YNILLEGHCKHGNPEDFDKLQSE 440
           Y  +++GH K GN +   K  SE
Sbjct: 184 YTSIIDGHFKKGNIDVAMKYFSE 206



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 66/267 (24%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           FRL + AY  ++  LV +    +  +++  +V + G+     +  +++     H      
Sbjct: 212 FRLDIVAYGVVISGLVNNGRLDKVLEVMEDMV-RNGLAPDKVVLTTLMHA---HFKAGNT 267

Query: 63  DALMIVYVDL---GFLDDAIQCFRLL-------RKHYFRIPARGCRC-----------LI 101
            A   VY +L   GF  DA+    L+       R H     A+G  C           LI
Sbjct: 268 KAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYH----DAKGYFCKEKANEVSYTALI 323

Query: 102 DRMMRT-NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           D + +  NL  V     +E+ + G+ P  +V+   + +LC++GKI +A            
Sbjct: 324 DGICKEGNLDEVE-RVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEA------------ 370

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
                                  F++K+ M   G+  D+ TYS+LI GL  +  + +A+ 
Sbjct: 371 -----------------------FKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMIEAKQ 407

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKN 247
           L  +M +RG+ P+ ++F  LI G+ K 
Sbjct: 408 LFDDMLKRGIIPDSMVFDILIRGYLKQ 434



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
           +G  PD  TY  +ID +CK G  +     +K +R+      + ++NAL NG CK  ++K 
Sbjct: 1   MGSLPDIVTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKR-KMKE 59

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
              +   ++    +P+ ITY   ++  CK G+ +    F K   + G+V +   +T L+ 
Sbjct: 60  EVFIYMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLID 119

Query: 456 KSSK 459
             SK
Sbjct: 120 GYSK 123


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 167/331 (50%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  + +L+   C E  +  A  + DE G RG     V++N L+NG CK   LDE  + 
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G +P+V T++ ++  +C   R  DAE LL EM  +G +P+ V F  LI+  C+
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G +  A D      I+++M T+G  P+ ++Y  LL GFCKE  ++ A+   + M+ RG 
Sbjct: 134 KGLLGRAID------ILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  +++  C+ GKV  A  +L ++   G  P   TY  VID   K G T     
Sbjct: 188 YPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL EMR  G  P V TY++L+ GL + G+++ A      +   GV P+  TYN ++ G C
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLC 307

Query: 427 KHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           K    +   DF      KG       YT L+
Sbjct: 308 KAQQTDRAIDFLAYMISKGCKPTEVSYTILI 338



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 6/287 (2%)

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           V D   ++  +   +++  LI   C    + +  +L   M   G +PDV TY+ L+NG+C
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           KE RLD+A   L+ M   G  PN +    ++   C  GR        +A K++ EM   G
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGR------WMDAEKLLTEMVRKG 116

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
            +P  +T+ IL++  C++G L  A+DI ++M   G   +++++  L+ GFC+  K+  A 
Sbjct: 117 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           + L  M+  G  PD  TY  ++   CK+G       LL ++ S G  P + TYN +++GL
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            K G+   A  LL  M   G+ PD ITY+ L+ G  + G  E+  K 
Sbjct: 237 SKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKF 283



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 141/257 (54%), Gaps = 6/257 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G SPSV  FN+L++ LC++G +  A  + ++    G    ++S+N L++G CK K
Sbjct: 111 EMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEK 170

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D   +   +M   G  PD+ TY+ ++  LCK+ ++D A  LL+++  +G +P  + + 
Sbjct: 171 KMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYN 230

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+IDG  K G+ D      +A +++ EM   GL PD ITY+ L+ G  +EG +E A+   
Sbjct: 231 TVIDGLSKVGKTD------QAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFF 284

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++   G++ +   + +++ G C+  +   A   L  M+  G KP + +YT++I+     
Sbjct: 285 HDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANE 344

Query: 359 GDTKTGFRLLKEMRSDG 375
           G  K    LL E+ S G
Sbjct: 345 GLAKEALELLNELCSRG 361



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           +L    E+   P+ + +T LI+  C    +       +A K++DEM + G  PD +TY +
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVG------QAMKLLDEMGSRGCKPDVVTYNV 56

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L++G CKEG L+ A+     M   G + + +    ++   C  G+ ++AE++L EM++ G
Sbjct: 57  LVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG 116

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
             P   T+ ++I+  C+ G       +L++M + G  P   +YN L++G CK  ++  A 
Sbjct: 117 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKS 457
             L+ M+  G  PD +TYN +L   CK G  +   +L    S KG       Y +++   
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236

Query: 458 SK 459
           SK
Sbjct: 237 SK 238



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LLH    +K M   A  +  I+ +RG +   +  + ++      G +D A++        
Sbjct: 162 LLHGFCKEKKM-DRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLN----- 215

Query: 89  YFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
             ++ ++GC         +ID + +       +    E+   G  P V  ++ L+  L +
Sbjct: 216 --QLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSR 273

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
           EGK+++A   F +    G+   A ++N+++ G CKA+  D      + M   G +P   +
Sbjct: 274 EGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVS 333

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLT 231
           Y+ LI G+  E    +A  LL+E+C RG+ 
Sbjct: 334 YTILIEGIANEGLAKEALELLNELCSRGVV 363


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 167/324 (51%), Gaps = 6/324 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++L   ++P +  FN L++  C+ G I +A ++FDE   R L  T +++NTLI+G C 
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              LD   RLK  M   G+ PD++TY+ L+NG  K   +  A    +EM  +GL P+   
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T I G  K     +A  M+E      EM   G  PD ITY + +   C++G+ E A D
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQE------EMLAAGFPPDVITYNVFVHALCQQGNFEEACD 516

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + + M+  G+  D+V +T++I+GF + G + +A  +  EML  G+ P   TYT++I    
Sbjct: 517 LLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHA 576

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
                   F    +M        V TYNA++NGLC   ++  A    D M + G++P+  
Sbjct: 577 AKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKF 636

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE 440
           +Y IL+   C  G  E+  +L  E
Sbjct: 637 SYTILINESCNMGYWEEALRLYRE 660



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P+   +NVL++ L K+G+++ A+ + +E    GL+ +A ++N LING C+  
Sbjct: 240 EMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKG 299

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              E F L   M      P + TY+ L+ GLCK  ++    L   +M +   TP+ V F 
Sbjct: 300 LFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFN 359

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +L+ G+C+ G I       EA  + DE+    L P  ITY  L+ G C  G L++AL ++
Sbjct: 360 SLLYGYCRTGCIS------EAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLK 413

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM  +G+  D   +T L++G  + G V  A     EML  GLKPD   Y   I    K 
Sbjct: 414 KEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKI 473

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            DT   F + +EM + G  P V TYN  ++ LC+ G  + A  LL+ M+  G++PD +TY
Sbjct: 474 ADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTY 533

Query: 419 NILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLV 454
             ++ G  K+G+     E F+++ S KG+      YT L+
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLS-KGVAPSVVTYTVLI 572



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 162/312 (51%), Gaps = 8/312 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   E+L+ G + S Y +N L++  C++G   +A  + +E   R    T  ++NTL+ G 
Sbjct: 271 GLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGL 330

Query: 175 CKAKNLDEGFRLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           CK   +  G RL+ S M  S   PD+ ++++L+ G C+   + +A LL  E+  R L P 
Sbjct: 331 CKWVQVT-GVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPT 389

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + + TLI G C  G +D A  +K+      EM   GL PD  TYTIL++G  K G +  
Sbjct: 390 VITYNTLIHGLCMWGYLDAALRLKK------EMTDQGLFPDIFTYTILVNGCFKLGYVSM 443

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A     EM+ +G++ D  A+   I G  +      A  M  EML  G  PD  TY + + 
Sbjct: 444 ARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVH 503

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C+ G+ +    LL+ M SDG +P   TY +++NG  K+G L+ A  + + ML  GV P
Sbjct: 504 ALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 414 DDITYNILLEGH 425
             +TY +L+  H
Sbjct: 564 SVVTYTVLIHAH 575



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 145/280 (51%), Gaps = 6/280 (2%)

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           +VFD+  + GL     + N ++        L +   +  +ME  G++P V TY+ +++  
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           CKE R+D A  LL EM ERG  PNDV +  L++G  K       G++++A+ +++EM  +
Sbjct: 226 CKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKK------GELEQAKGLIEEMLNS 279

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GLN    TY  L++GFC++G    A D+ +EM+ R        +  L+ G C+  +V   
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGV 339

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
                +MLK    PD  ++  ++  +C+ G     F L  E++    +P V TYN L++G
Sbjct: 340 RLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHG 399

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           LC  G L  A  L   M D G+ PD  TY IL+ G  K G
Sbjct: 400 LCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLG 439



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 168/321 (52%), Gaps = 11/321 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G  P ++ + +L++   K G +  A+  F+E   +GL     ++NT I G  K  
Sbjct: 415 EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIA 474

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +    F ++  M  +G  PDV TY+  ++ LC++   ++A  LL  M   GL P+ V +T
Sbjct: 475 DTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYT 534

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++I+G  KNG       +++AR++ +EM + G+ P  +TYT+L+     +  L+ A    
Sbjct: 535 SIINGFVKNGH------LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYF 588

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M+++ +  + + + A+I+G C   ++ EA +   EM + G+ P+  +YT++I+  C  
Sbjct: 589 SKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNM 648

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +   RL +EM      P   T++  +  L +  Q+ +A   +++++    V D+I  
Sbjct: 649 GYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV-HAVQCVESLIQ--NVEDNI-- 703

Query: 419 NILLEGHCKHGNPEDFDKLQS 439
           N+ L    K+   E+F + QS
Sbjct: 704 NVRLLRPRKNVMEENFARSQS 724



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 5/203 (2%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           + +A+ +   M   G+ P  +TY  +LD +CKEG ++ AL++  EM +RG   ++V +  
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++G  + G++ +A+ ++ EML  GL     TY  +I+ FC+ G     F L++EM +  
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRR 315

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
             P + TYN LM GLCK  Q+    +    ML     PD +++N LL G+C+ G   +  
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAF 375

Query: 434 --FDKLQSEKGLVSDYACYTSLV 454
             FD+L+  + LV     Y +L+
Sbjct: 376 LLFDELKC-RDLVPTVITYNTLI 397



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 6/216 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           +V      E+L  G+ P V  +NV +H LC++G  ++A  + +     GL    V++ ++
Sbjct: 477 SVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ING  K  +L +   + + M   G+ P V TY+ LI+    +  LD A +   +M E+ +
Sbjct: 537 INGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV 596

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
             N + +  +I+G C   R+D      EA K  DEM   G+ P+K +YTIL++  C  G 
Sbjct: 597 PANVITYNAIINGLCMTRRMD------EAYKYFDEMEEKGILPNKFSYTILINESCNMGY 650

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
            E AL + +EM+ R I+ D+   +  +    R  +V
Sbjct: 651 WEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 202/402 (50%), Gaps = 73/402 (18%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V+++NVL+  LC+E +I+DA+ +FDE     L  + V++NTLI+G+CK   LD  
Sbjct: 206 GVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAA 265

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM------------------ 225
           F+++  M+   + P++ T+++L++GLCK  ++ +A  LL EM                  
Sbjct: 266 FKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDG 325

Query: 226 -----------------CERGLTPNDVIFTTLIDGHCKNGRIDMA--------------- 253
                             E+G+  N+   + L++G CK G+++ A               
Sbjct: 326 LLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVAD 385

Query: 254 --------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
                         GDM +A   ++ M + GL P+ IT+  L+D FC   +++ A +  K
Sbjct: 386 EVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVK 445

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAER---MLREMLKVGLKPDDATYTMVIDCFC 356
           +M ++G+      +  LI G+   GK+   +R   +L +M ++G+KP+  +Y  +I+C C
Sbjct: 446 KMAEKGVTPSVETYNTLIDGY---GKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLC 502

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K+G       +L++M   G LP  + YN L++G C  G++K+A    D M+   + P  +
Sbjct: 503 KDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLV 562

Query: 417 TYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
           TYN+L++G CK G     EDF    +  G   D   Y SL+S
Sbjct: 563 TYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLIS 604



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 192/358 (53%), Gaps = 10/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D ++R +     +  Y +  + G   + Y  ++L++ LCK+GK++ A+ +  +F + G
Sbjct: 322 LFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENG 381

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L A  V +NT +NG+C+  ++++       ME  G+RP+  T+++LI+  C    +D AE
Sbjct: 382 LVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAE 441

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             + +M E+G+TP+   + TLIDG+ K    D         +I+++M   G+ P+ ++Y 
Sbjct: 442 EWVKKMAEKGVTPSVETYNTLIDGYGKLCTFD------RCFQILEQMEEIGVKPNVVSYG 495

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++  CK+G +  A  + ++MI RG+  +   +  LI G C  GKV +A R   EM++ 
Sbjct: 496 SLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRS 555

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + P   TY ++ID  CK G        L ++ S GH P V TYN+L++G    G +   
Sbjct: 556 EISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKC 615

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             L +TM +LG+ P   TY+ L+ G  K G  E  +KL +E     L+ D   Y +++
Sbjct: 616 LGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMI 672



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 173/338 (51%), Gaps = 40/338 (11%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P+   FN L+ K C   ++  A+    +  ++G+  +  ++NTLI+G+ K    D 
Sbjct: 415 FGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDR 474

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            F++   ME  G++P+V +Y +LIN LCK+ ++ +AE++L +M  RG+ PN  ++  LID
Sbjct: 475 CFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLID 534

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C      M G +K+A +  DEM  + ++P  +TY +L+DG CK+G L  A D   ++ 
Sbjct: 535 GSC------MVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQIT 588

Query: 303 KRGIELDNVAFTALISGFCRGGKVVE---------------------------------- 328
             G   D + + +LISG+   G V +                                  
Sbjct: 589 SSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIEL 648

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
            E++  EML++ L PD   Y  +I C+ + G+T+  + L + M   G  P   TYN+L+ 
Sbjct: 649 VEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLIL 708

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           G  + G+L N   L++ M    + P   TY+IL++GHC
Sbjct: 709 GHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHC 746



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 150/306 (49%), Gaps = 29/306 (9%)

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +F E    G       +   I    K +NL  G      M   G+RP+V+ Y+ LI GLC
Sbjct: 163 LFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLC 222

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------------- 253
           +E R+ DAE +  EMC   L  + V + TLIDG+CK G +D A                 
Sbjct: 223 REKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNII 282

Query: 254 ------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
                         MKEAR ++ EM  NG  PD  TY+IL DG  +  D   A+++ ++ 
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQA 342

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            ++GI ++N   + L++G C+ GKV +AE +L++  + GL  D+  Y   ++ +C+ GD 
Sbjct: 343 TEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM 402

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                 ++ M S G  P   T+N+L++  C   ++  A   +  M + GV P   TYN L
Sbjct: 403 NKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTL 462

Query: 422 LEGHCK 427
           ++G+ K
Sbjct: 463 IDGYGK 468



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 257 KEARKIVD---EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           K+  K+VD   E+  +G   D   Y   +    K  +L+  ++    M KRG+  +   +
Sbjct: 155 KQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIY 214

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI G CR  ++ +AE+M  EM  + L     TY  +ID +CK G+    F++ + M+ 
Sbjct: 215 NVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKE 274

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG--HCKHGN- 430
               P + T+N+L++GLCK  ++K A  LL  M   G +PD  TY+IL +G   C  GN 
Sbjct: 275 KSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNG 334

Query: 431 PEDFDKLQSEKGL-VSDYA 448
             +  +  +EKG+ +++Y 
Sbjct: 335 AMELYEQATEKGIRINNYT 353



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 9/284 (3%)

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK+K L E   L   M   G  P + + S L + L  E +      L  E+   G   + 
Sbjct: 117 CKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDT 176

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
            ++   I    K        ++K   + +D M   G+ P+   Y +L+ G C+E  +  A
Sbjct: 177 FMYAKAIQAAVK------LQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDA 230

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             +  EM    +    V +  LI G+C+ G++  A +M   M +  + P+  T+  ++  
Sbjct: 231 EKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSG 290

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK    K    LLKEM  +G +P   TY+ L +GL +      A  L +   + G+  +
Sbjct: 291 LCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRIN 350

Query: 415 DITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
           + T +ILL G CK G  E  +++    +E GLV+D   Y + V+
Sbjct: 351 NYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVN 394



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 4/196 (2%)

Query: 273 PDKITYT-ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
           P +IT + +LL   CK   L  A+++ + M + G     V+ + L S      + V+   
Sbjct: 103 PLRITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVD 162

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  E+   G + D   Y   I    K  + K G   L  MR  G  P V  YN L+ GLC
Sbjct: 163 LFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLC 222

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYA 448
           +  ++++A  + D M ++ +V   +TYN L++G+CK G  +   K++    EK +  +  
Sbjct: 223 REKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNII 282

Query: 449 CYTSLVSKSSKYRQKR 464
            + SL+S   K R+ +
Sbjct: 283 TFNSLLSGLCKMRKMK 298



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 9/237 (3%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           KKG  + A  F + + + G H P ++  ++L+  Y + G +   +  +  ++    +   
Sbjct: 573 KKGKLTEAEDFLTQITSSG-HSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTV 631

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           R    LI    +  +  V    Y E+L     P   V+N ++H   + G  + A  +   
Sbjct: 632 RTYHPLISGCSKEGIELVE-KLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQG 690

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
              +G+H   +++N+LI GH +   L     L + M+   + P   TY  L+ G C    
Sbjct: 691 MLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKD 750

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
              A +   EM E    PN  I   L  G      ++  G ++E + I  EM   G+
Sbjct: 751 FSGAYVWYREMVENNFLPNASICNELTAG------LEQEGRLQEVQVICSEMNVKGI 801


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 183/349 (52%), Gaps = 18/349 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           CRC      +T      LG   +++  GY P    FN L+  L  EGK+ +A ++ D   
Sbjct: 134 CRCC-----KTCFAYSVLG---KVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G     V++N+++NG C++ +      L   ME   ++ DV+TYS +I+ LC++  +D
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L  EM  +G+  + V + +L+ G CK      AG   +   ++ +M +  + P+ I
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCK------AGKWNDGALLLKDMVSREIVPNVI 299

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+ +LLD F KEG L+ A ++ KEMI RGI  + + +  L+ G+C   ++ EA  ML  M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           ++    PD  T+T +I  +C       G ++ + +   G +    TY+ L+ G C+ G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           K A  L   M+  GV+PD +TY ILL+G C +G  E     F+ LQ  K
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 167/297 (56%), Gaps = 6/297 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FNVL+    KEGK+++A  ++ E   RG+    +++NTL++G+C    L E   +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M  +   PD+ T+++LI G C   R+DD   +   + +RGL  N V ++ L+ G C+
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G+I      K A ++  EM ++G+ PD +TY ILLDG C  G LE AL+I +++ K  +
Sbjct: 416 SGKI------KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +L  V +T +I G C+GGKV +A  +   +   G+KP+  TYT++I   CK G       
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           LL++M  DG+ P   TYN L+    + G L  +  L++ M   G   D  +  ++++
Sbjct: 530 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 195/392 (49%), Gaps = 48/392 (12%)

Query: 91  RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           R+   GC+        +++ + R+   ++ L    ++ +      V+ ++ ++  LC++G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
            I  A  +F E   +G+ ++ V++N+L+ G CKA   ++G  L   M    + P+V T++
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            L++   KE +L +A  L  EM  RG++PN + + TL+DG+C   R      + EA  ++
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR------LSEANNML 356

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M  N  +PD +T+T L+ G+C    ++  + + + + KRG+  + V ++ L+ GFC+ 
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD--------- 374
           GK+  AE + +EM+  G+ PD  TY +++D  C NG  +    + ++++           
Sbjct: 417 GKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476

Query: 375 --------------------------GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
                                     G  P V TY  +++GLCK G L  AN+LL  M +
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            G  P+D TYN L+  H + G+     KL  E
Sbjct: 537 DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 154/314 (49%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F E  +     + V F+   +   + K  +        +E +G+  ++YT +
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +IN  C+  +   A  +L ++ + G  P+   F TLI G      + + G + EA  +V
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKG------LFLEGKVSEAVVLV 181

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M  NG  PD +TY  +++G C+ GD   ALD+ ++M +R ++ D   ++ +I   CR 
Sbjct: 182 DRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 241

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G +  A  + +EM   G+K    TY  ++   CK G    G  LLK+M S   +P V T+
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK---LQSE 440
           N L++   K G+L+ AN L   M+  G+ P+ ITYN L++G+C      + +    L   
Sbjct: 302 NVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR 361

Query: 441 KGLVSDYACYTSLV 454
                D   +TSL+
Sbjct: 362 NKCSPDIVTFTSLI 375



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 50  LETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           L  R    P +V   +L+  Y  +  +DD ++ FR + K      A     L+    ++ 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              +    + E++ +G  P V  + +L+  LC  GK++ A  +F++  K  +    V + 
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           T+I G CK   +++ + L   +   G++P+V TY+ +I+GLCK+  L +A +LL +M E 
Sbjct: 478 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           G  PND  + TLI  H ++      GD+  + K+++EM + G + D  +  +++D
Sbjct: 538 GNAPNDCTYNTLIRAHLRD------GDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 64/272 (23%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E++  G SP++  +N LM   C + ++ +A  + D   +       V+F +LI G+C
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
             K +D+G ++   +   G+  +  TYS L+ G C+  ++  AE L  EM   G+ P+ +
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 236 IFTTLIDGHCKNGRIDMA----GDMKEAR---------KIVDEMCT-------------- 268
            +  L+DG C NG+++ A     D+++++          I++ MC               
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499

Query: 269 --NGLNPDKITYTILLDGFC-----------------------------------KEGDL 291
              G+ P+ +TYT+++ G C                                   ++GDL
Sbjct: 500 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDL 559

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            ++  + +EM   G   D  +   +I     G
Sbjct: 560 TASAKLIEEMKSCGFSADASSIKMVIDMLLSG 591



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G++LD L     D G L+ A++ F  L+K    +       +I+ M +          + 
Sbjct: 442 GILLDGL----CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            +   G  P+V  + V++  LCK+G + +A ++  +  + G      ++NTLI  H +  
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDG 557

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           +L    +L   M+  G   D  +   +I+ L
Sbjct: 558 DLTASAKLIEEMKSCGFSADASSIKMVIDML 588


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 178/350 (50%), Gaps = 12/350 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+  +G    V   N ++    + G    A+ VFD   + G+     SF  L+   C+ 
Sbjct: 127 LEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCRE 186

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             ++E   L + M   G   D  T + ++  LC++ R  D       M E G  PN V +
Sbjct: 187 GKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNY 246

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T  IDG CK   +      K+A  +++EM   GL P+  T+T L+DG CK G  E A  +
Sbjct: 247 TAWIDGLCKRRYV------KQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 300

Query: 298 RKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
             ++IK      NV  +T +I G+CR GK+  AE +L  M++ GLKP+  TYT +I   C
Sbjct: 301 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 360

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G     F L+ +M+ +G LP + TYNA+++G CK G+++ A  +L      G+  D I
Sbjct: 361 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKI 420

Query: 417 TYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           TY IL+  HCK G+     + FD++  E G   D   YTSL+S   + RQ
Sbjct: 421 TYTILITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLISTYCQQRQ 469



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 198/433 (45%), Gaps = 10/433 (2%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFAS-ILETRGTHLPG 59
           P  R  +  Y T     VA      A +++  +V+  G        A  +LE R   LP 
Sbjct: 77  PDLRRLMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPL 136

Query: 60  LVLDALMIVYVDL--GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
            V  A  ++ V L  G    A + F  + +       R  R L+    R           
Sbjct: 137 CVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALL 196

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
             +  YG+S       V++  LC++G+ KD    F    + G     V++   I+G CK 
Sbjct: 197 AAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKR 256

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVI 236
           + + + F +   M G G++P+VYT++ LI+GLCK    + A  L L  +      PN   
Sbjct: 257 RYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHT 316

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T +I G+C+ G++        A  ++  M   GL P+  TYT L+ G CK G  + A +
Sbjct: 317 YTVMIGGYCREGKL------ARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 370

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +M + G   +   + A+I GFC+ GK+ EA ++LR     GLK D  TYT++I   C
Sbjct: 371 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 430

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G       L   M  +G  P +E Y +L++  C+  Q++ +    D  L +G++P   
Sbjct: 431 KQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQ 490

Query: 417 TYNILLEGHCKHG 429
           TY  ++ G+CK G
Sbjct: 491 TYTSMIAGYCKVG 503



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 159/302 (52%), Gaps = 7/302 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+  +L+ G  P+V  +   +  LCK   +K A  V +E   RGL     +  TLI+G C
Sbjct: 230 FFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLC 289

Query: 176 KAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           K    +  FRL   +++ S  +P+V+TY+ +I G C+E +L  AE+LL  M E+GL PN 
Sbjct: 290 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNT 349

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             +TTLI GHCK G  D A +      ++++M   G  P+  TY  ++DGFCK+G ++ A
Sbjct: 350 NTYTTLIGGHCKGGSFDRAFE------LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 403

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + +    +G++ D + +T LI+  C+ G +  A  +   M++ G  PD   YT +I  
Sbjct: 404 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLIST 463

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +C+    +   +   +    G LP  +TY +++ G CK G+   A  + + M+  G   D
Sbjct: 464 YCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFAD 523

Query: 415 DI 416
            I
Sbjct: 524 SI 525



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 35/148 (23%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P++Y +N ++   CK+GKI++A  V      +GL    +++  LI  HCK  ++   
Sbjct: 379 GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYA 438

Query: 184 FRLKSVMEGSGMRPDV-----------------------------------YTYSALING 208
             L   M  +G  PD+                                    TY+++I G
Sbjct: 439 LDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAG 498

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVI 236
            CK  R   A  +   M + G   + ++
Sbjct: 499 YCKVGRSTMALRVFERMVQNGCFADSIL 526



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%)

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           ++  F + G       ++ EMRS G    VET N ++    + G    A  + D M   G
Sbjct: 109 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 168

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL 437
           V PD+ ++  L+   C+ G  E+ D L
Sbjct: 169 VCPDERSFRALVVVCCREGKVEEVDAL 195


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 180/330 (54%), Gaps = 13/330 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP  Y FNVL+  LC  G + DA+ +FD+  ++G      SF  L+ G+C+A    +G
Sbjct: 51  GVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKG 110

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G  P+   Y+ LI+  CKE + DDAE L+ EM + GL+P+ V F   I  
Sbjct: 111 LELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISA 170

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGL----NPDKITYTILLDGFCKEGDLESALDIRK 299
            C +G++       EA +I  +M  + +     P+ ITY ++L GFCKEG LE A  + +
Sbjct: 171 LCSSGKV------LEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFE 224

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M      ++  ++   + G  R GK++EA+ +L+EM+ +G++P+  +Y +V+D  CKNG
Sbjct: 225 KMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNG 284

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  L++ M S G LP   TY  L++G C  G++  AN +L  M+  G  P++ T N
Sbjct: 285 VLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCN 344

Query: 420 ILLEGHCKHGNPEDFDKL---QSEKGLVSD 446
           ILL    K G   + ++L    +EKG V D
Sbjct: 345 ILLYSLWKEGRISEAEELLQKMNEKGYVID 374



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/556 (25%), Positives = 225/556 (40%), Gaps = 143/556 (25%)

Query: 35  SKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           +K+G     S     +   G        + L+ +  D G LDDA       R+ + ++P 
Sbjct: 32  TKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDA-------RELFDKMPE 84

Query: 95  RGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           +GC         L+    R    +  L    E+   G+SP+  V+N L+   CKEGK  D
Sbjct: 85  KGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDD 144

Query: 148 AQMVFDEFGKRGLHATAVSF---------------------------------------N 168
           A+ + DE  K GL    V+F                                       N
Sbjct: 145 AEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYN 204

Query: 169 TLINGHCKAKNLDEG--------------------------FRLKSVMEGS--------- 193
            ++ G CK   L+E                            R+  ++E           
Sbjct: 205 LMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDM 264

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           GM P+VY+Y+ +++GLCK   L DA +L+  M   G+ P+ V +TTL+ G+C  G++  A
Sbjct: 265 GMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEA 324

Query: 254 -----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
                                        G + EA +++ +M   G   D +T  I++DG
Sbjct: 325 NNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDG 384

Query: 285 FCKEGDLESALDIRKEMIKRGIEL-----------------------DNVAFTALISGFC 321
            C  G L+ A++I   M   G                          D ++++ +ISG C
Sbjct: 385 LCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLC 444

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + G+V EA++   EM+   L+PD A Y + I  FCK G   + FR+LK+M   G    ++
Sbjct: 445 KAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQ 504

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE- 440
           TYN+L+ GL    Q+     L+D M + GV PD   YN +L   C+ G  +D   +  E 
Sbjct: 505 TYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEM 564

Query: 441 --KGLVSDYACYTSLV 454
             KG+  + + ++ L+
Sbjct: 565 LQKGISPNISSFSILI 580



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 180/440 (40%), Gaps = 121/440 (27%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G  P+VY +N++M  LCK G + DA+M+       G+    V++ TL++G+C   
Sbjct: 260 EMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTG 319

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E   +   M   G  P+ YT + L+  L KE R+ +AE LL +M E+G   + V   
Sbjct: 320 KVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCN 379

Query: 239 TLIDGHCKNGRIDMA--------------------------------------------- 253
            +IDG C NG++D A                                             
Sbjct: 380 IVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTI 439

Query: 254 -------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK------- 299
                  G + EA+K   EM    L PD   Y + +  FCKEG + SA  + K       
Sbjct: 440 ISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGC 499

Query: 300 ----------------------------EMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
                                       EM +RG+  D   +  ++S  C GG+V +A  
Sbjct: 500 NKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPS 559

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK-EMRSDGHLPAVE--TYNALMN 388
           +L EML+ G+ P+ ++++++I  FCK  D      + +  +   GH  A+   T+N L+ 
Sbjct: 560 VLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLV 619

Query: 389 G-------------------------------LCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           G                               LCK  +L +A+ +L  ++D G   D  +
Sbjct: 620 GGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPAS 679

Query: 418 YNILLEGHCKHGNPEDFDKL 437
           +  +++G  K GN  + D+L
Sbjct: 680 FMPVIDGLGKRGNKHEADEL 699



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 7/284 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  ++ ++  LCK G++ +A+  F E   + L   +  ++  I+  CK   +   FR+
Sbjct: 431 PDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRV 490

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              ME  G    + TY++LI GL  +N++ +   L+ EM ERG++P+  I+  ++   C+
Sbjct: 491 LKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCE 550

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR+      K+A  ++DEM   G++P+  +++IL+  FCK  D  SA+D   E+     
Sbjct: 551 GGRV------KDAPSVLDEMLQKGISPNISSFSILIKAFCKACDF-SAVDEIFEIALNVC 603

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
                 ++   +    GG+VV+A+ +    L       +  Y  +ID  CK+        
Sbjct: 604 GHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASG 663

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +L ++   G+     ++  +++GL K G    A+ L + M+++ 
Sbjct: 664 ILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMA 707



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 129/264 (48%), Gaps = 10/264 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           ++E++     P   +++V +H  CKEGKI  A  V  +  K+G + T  ++N+LI G   
Sbjct: 456 FIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGS 515

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + E + L   M   G+ PDV  Y+ +++ LC+  R+ DA  +L EM ++G++PN   
Sbjct: 516 KNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISS 575

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F+ LI   CK      A D     +I  E+  N     +  Y++  +     G++  A +
Sbjct: 576 FSILIKAFCK------ACDFSAVDEIF-EIALNVCGHKEALYSLTFNELLVGGEVVKAKE 628

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +  + R  ++ N  +  LI   C+  K+ +A  +L +++  G   D A++  VID   
Sbjct: 629 LFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLG 688

Query: 357 KNGDTKTGFRL---LKEMRSDGHL 377
           K G+      L   + EM S+G +
Sbjct: 689 KRGNKHEADELAEKMMEMASEGKV 712



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 1/159 (0%)

Query: 272 NPDKI-TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           NP  I  Y +LL    KEG ++    + K+M+  G+  +   F  LI   C  G + +A 
Sbjct: 17  NPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAR 76

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +  +M + G +P++ ++ +++  +C+ G T  G  LL EMR  G  P    YN L++  
Sbjct: 77  ELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSF 136

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           CK G+  +A  L+D M   G+ PD +T+N  +   C  G
Sbjct: 137 CKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSG 175



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 37/196 (18%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   E+ + G SP V ++N ++  LC+ G++KDA  V DE  ++G+     SF+ LI   
Sbjct: 524 GLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAF 583

Query: 175 CKA---KNLDEGFRL----------------------------KSVMEGSGMRP-DV--Y 200
           CKA     +DE F +                            K + E +  R  DV  +
Sbjct: 584 CKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNF 643

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
            Y  LI+ LCK+ +LDDA  +LH++ ++G   +   F  +IDG  K G    A ++ E  
Sbjct: 644 LYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEK- 702

Query: 261 KIVDEMCTNGLNPDKI 276
             + EM + G   +K+
Sbjct: 703 --MMEMASEGKVKNKV 716


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 197/371 (53%), Gaps = 7/371 (1%)

Query: 58  PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P LV  + L++ +   G +D A    + + +   +  A     LID   +          
Sbjct: 462 PSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVV 521

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + +++    +P+ + FN +++ L K G++ + Q   + F K+G  +T++++N++I+G  K
Sbjct: 522 FEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFK 581

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +D        M  SG+ PDV TY++LI+GLCK N++  A  +  +M  +G+  + V 
Sbjct: 582 EGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVA 641

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++ LIDG CK        DM+ A K   E+   GL P+ + Y  ++ GF    ++E+AL+
Sbjct: 642 YSALIDGFCK------MHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALN 695

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EMIK  +  D   +T++I G  + GK+  A  +  EML   + PD   YT++I+   
Sbjct: 696 LHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLS 755

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            NG  +   ++LKEM  +   P+V  YN L+ G  + G L+ A  L D MLD G+VPDD 
Sbjct: 756 NNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDT 815

Query: 417 TYNILLEGHCK 427
           TY+IL+ G  K
Sbjct: 816 TYDILVNGKLK 826



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 176/339 (51%), Gaps = 9/339 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           IL+ G  P+   + +L+    K+G  + A +VF++     +  T  +FNT+ING  K   
Sbjct: 490 ILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGR 549

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E     +     G      TY+++I+G  KE  +D A L   EMCE G++P+ + +T+
Sbjct: 550 VSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTS 609

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LIDG CK+ +I +A +M        +M   G+  D + Y+ L+DGFCK  D+ESA     
Sbjct: 610 LIDGLCKSNKIGLALEMH------SDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFT 663

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           E++  G+  + V + ++ISGF     +  A  + +EM+K  +  D   YT +I    K G
Sbjct: 664 ELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEG 723

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  L  EM S   +P +  Y  L+NGL  +GQL+NA+ +L  M    + P  + YN
Sbjct: 724 KLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYN 783

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           IL+ G+ + GN ++  +L  E   KGLV D   Y  LV+
Sbjct: 784 ILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 209/434 (48%), Gaps = 11/434 (2%)

Query: 3   FRLTLHAYSTMVHFLVAH-KMHSQARDLLHLIVSKKGMGSSASLFASILETRGTH---LP 58
           F  T+   S ++H L ++ K  S  + LL+  V      S+      +LE  G +     
Sbjct: 90  FVKTVDFISLLIHILSSNSKTCSSLQFLLNNYVFGDATPSAKVFVECLLECSGRYGFESD 149

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
             V + L+  +V +  + DA++CFR + +H           L+  M+R N+       Y 
Sbjct: 150 SRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYD 209

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G     Y  +V+M    KEGK ++ +  F E   RGL   A +++ L+   C+  
Sbjct: 210 EMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRL 269

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    L   M   G  P   TY+A+I    K+    +A  L  EM   GL  N ++  
Sbjct: 270 DLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTR 329

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +L+ G+C      + GD+  A ++ DE+   G+ PD + +++L++G  K GD+E A ++ 
Sbjct: 330 SLMKGYC------VLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELY 383

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M   GI+ +     +L+ GF     +  A  +  E ++ G+  +  TY +++    + 
Sbjct: 384 TRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGEL 442

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       L ++M S G  P++ +YN L+ G CK G +  A  +L ++L+ G+ P+ +TY
Sbjct: 443 GKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTY 502

Query: 419 NILLEGHCKHGNPE 432
            +L++G  K G+ E
Sbjct: 503 TLLIDGFFKKGDSE 516



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 178/374 (47%), Gaps = 43/374 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G   +V V   LM   C  G +  A  +FDE  + G+    V F+ LING  K  
Sbjct: 315 EMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVG 374

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-------------------- 218
           ++++ + L + M+  G++P+V+  ++L+ G  ++N L+ A                    
Sbjct: 375 DMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNI 434

Query: 219 ------EL--------LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
                 EL        L  +M  +G+TP+ V +  LI GHCK G +D A  M      + 
Sbjct: 435 LLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSM------LK 488

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
            +   GL P+ +TYT+L+DGF K+GD E A  + ++M+   I   +  F  +I+G  + G
Sbjct: 489 SILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTG 548

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +V E +  L   +K G      TY  +ID F K G   +     +EM   G  P V TY 
Sbjct: 549 RVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYT 608

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
           +L++GLCK  ++  A  +   M   G+  D + Y+ L++G CK  + E   K  +E    
Sbjct: 609 SLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDI 668

Query: 442 GLVSDYACYTSLVS 455
           GL  +   Y S++S
Sbjct: 669 GLTPNTVVYNSMIS 682



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 31/348 (8%)

Query: 36  KKG-MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           KKG M  + S+  SILE RG     +    L+  +   G  + A   F  +         
Sbjct: 476 KKGCMDKAYSMLKSILE-RGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTD 534

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                +I+ + +T   + T       +  G+  +   +N ++    KEG +  A + + E
Sbjct: 535 HTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYRE 594

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             + G+    +++ +LI+G CK+  +     + S M+  GM+ DV  YSALI+G CK + 
Sbjct: 595 MCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHD 654

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDG--HCKN------------------------- 247
           ++ A     E+ + GLTPN V++ ++I G  H  N                         
Sbjct: 655 MESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTS 714

Query: 248 --GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             G +   G +  A  +  EM +  + PD + YT+L++G    G LE+A  I KEM    
Sbjct: 715 IIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNN 774

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           I    + +  LI+G  R G + EA R+  EML  GL PDD TY ++++
Sbjct: 775 ITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 164/369 (44%), Gaps = 43/369 (11%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           YG+     VFN L+    +  KI DA   F    +  L       N L+    +   + +
Sbjct: 144 YGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCD 203

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +L   M   G+  D YT   ++    KE + ++ E    E   RGL  +   ++ L+ 
Sbjct: 204 ARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQ 263

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C+  R+D+      A +++ EM   G  P K TYT ++    K+G+   AL ++ EM+
Sbjct: 264 AVCR--RLDL----NLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMV 317

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G+ ++ +   +L+ G+C  G V  A ++  E+++ G+ PD   ++++I+   K GD +
Sbjct: 318 SVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDME 377

Query: 363 TGFRLLKEMRSDGHLP---------------------------AVE-------TYNALMN 388
             + L   M+  G  P                           AVE       TYN L+ 
Sbjct: 378 KAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLK 437

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG-NPEDFDKLQS--EKGLVS 445
            L + G++  A  L + M+  G+ P  ++YN L+ GHCK G   + +  L+S  E+GL  
Sbjct: 438 WLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKP 497

Query: 446 DYACYTSLV 454
           +   YT L+
Sbjct: 498 NAVTYTLLI 506



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98
           M S++  F  +L+  G     +V ++++  ++ L  ++ A+   + + K+      +   
Sbjct: 655 MESASKFFTELLDI-GLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYT 713

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
            +I  +++    ++ L  Y E+L     P + ++ VL++ L   G++++A  +  E    
Sbjct: 714 SIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGN 773

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            +  + + +N LI G+ +  NL E FRL   M   G+ PD  TY  L+NG  K
Sbjct: 774 NITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKLK 826


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 184/340 (54%), Gaps = 11/340 (3%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  L++   +++ P +   F  +++  G+ P +  F  L++  C   ++++A  + ++  
Sbjct: 110 CNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV 169

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G+    V + T+I+  CK  +++    L   ME  G+RPDV  Y++L+NGLC   R  
Sbjct: 170 EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWR 229

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           DA+ LL  M +R + P+ + F  LID   K G+        +A ++ +EM    + P+  
Sbjct: 230 DADSLLRGMTKRKIKPDVITFNALIDAFVKEGKF------LDAEELYNEMIRMSIAPNIF 283

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L++GFC EG ++ A  +   M  +G   D VA+T+LI+GFC+  KV +A ++  EM
Sbjct: 284 TYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM 343

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + GL  +  TYT +I  F + G       +   M S G  P + TYN L++ LC +G++
Sbjct: 344 SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV 403

Query: 397 KNANMLLDTM----LDLGVVPDDITYNILLEGHCKHGNPE 432
           K A M+ + M    +D GV P+  TYN+LL G C +G  E
Sbjct: 404 KKALMIFEDMQKREMD-GVAPNIWTYNVLLHGLCYNGKLE 442



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 172/349 (49%), Gaps = 44/349 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G  P V ++  ++  LCK G +  A  +FD+    G+    V + +L+NG C + 
Sbjct: 167 QMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSG 226

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              +   L   M    ++PDV T++ALI+   KE +  DAE L +EM    + PN   +T
Sbjct: 227 RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT 286

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LI+G C  G +D      EAR++   M T G  PD + YT L++GFCK   ++ A+ I 
Sbjct: 287 SLINGFCMEGCVD------EARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIF 340

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM ++G+  + + +T LI GF + GK   A+ +   M+  G+ P+  TY +++ C C N
Sbjct: 341 YEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYN 400

Query: 359 GDTKTGFRLLKEMRS---DGHLPAVETYNALMNGLC------------------------ 391
           G  K    + ++M+    DG  P + TYN L++GLC                        
Sbjct: 401 GKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGI 460

Query: 392 -----------KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
                      K G++KNA  L  ++   GV P+ +TY  ++ G  + G
Sbjct: 461 ITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREG 509



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 6/305 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F  L++ + K  K      + D     G+     + N L+N  C++         
Sbjct: 70  PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ T+++LING C  NR+++A  ++++M E G+ P+ V++TT+ID  CK
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCK 189

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NG ++ A        + D+M   G+ PD + YT L++G C  G    A  + + M KR I
Sbjct: 190 NGHVNYA------LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKI 243

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D + F ALI  F + GK ++AE +  EM+++ + P+  TYT +I+ FC  G      +
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQ 303

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M + G  P V  Y +L+NG CK  ++ +A  +   M   G+  + ITY  L++G  
Sbjct: 304 MFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363

Query: 427 KHGNP 431
           + G P
Sbjct: 364 QVGKP 368



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 149/296 (50%), Gaps = 9/296 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + + F  L+N   K K  D    L   ++  G+  D+YT + L+N  C+ ++   A   L
Sbjct: 71  SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFL 130

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M + G  P+ V FT+LI+G C   R      M+EA  +V++M   G+ PD + YT ++
Sbjct: 131 GKMMKLGFEPDIVTFTSLINGFCLGNR------MEEAMSMVNQMVEMGIKPDVVMYTTII 184

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           D  CK G +  AL +  +M   GI  D V +T+L++G C  G+  +A+ +LR M K  +K
Sbjct: 185 DSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIK 244

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  T+  +ID F K G       L  EM      P + TY +L+NG C  G +  A  +
Sbjct: 245 PDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
              M   G  PD + Y  L+ G CK    +D  K+    S+KGL  +   YT+L+ 
Sbjct: 305 FYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQ 360



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 155/290 (53%), Gaps = 13/290 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  FN L+    KEGK  DA+ +++E  +  +     ++ +LING C    +DE  ++
Sbjct: 245 PDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +ME  G  PDV  Y++LING CK  ++DDA  + +EM ++GLT N + +TTLI G  +
Sbjct: 305 FYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQ 364

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+ ++A      +++   M + G+ P+  TY +LL   C  G ++ AL I ++M KR  
Sbjct: 365 VGKPNVA------QEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKR-- 416

Query: 307 ELDNVA-----FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           E+D VA     +  L+ G C  GK+ +A  +  +M K  +     TYT++I   CK G  
Sbjct: 417 EMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKV 476

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           K    L   + S G  P V TY  +++GL + G    A++L   M + GV
Sbjct: 477 KNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 131/245 (53%), Gaps = 9/245 (3%)

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           + ++A  L   M E    P+ + FT L++   K  + D+  ++ +  +I+      G++ 
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIM------GVSH 105

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D  T  +L++ FC+      A     +M+K G E D V FT+LI+GFC G ++ EA  M+
Sbjct: 106 DLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMV 165

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            +M+++G+KPD   YT +ID  CKNG       L  +M + G  P V  Y +L+NGLC  
Sbjct: 166 NQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNS 225

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           G+ ++A+ LL  M    + PD IT+N L++   K G   D ++L +E     +  +   Y
Sbjct: 226 GRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285

Query: 451 TSLVS 455
           TSL++
Sbjct: 286 TSLIN 290



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 65/108 (60%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+++ +NVL+H LC  GK++ A MVF++  KR +    +++  +I G CKA  +   
Sbjct: 420 GVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNA 479

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             L   +   G++P+V TY+ +I+GL +E    +A +L  +M E G++
Sbjct: 480 VNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 217/456 (47%), Gaps = 57/456 (12%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           L+     +P      L+  Y   G  + A++ F  ++    +        ++  M++  +
Sbjct: 122 LKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEV 181

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             + L  Y ++L   Y+P+   F +L++ LCK GK  DA  +FDE  ++G+    + +  
Sbjct: 182 FLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTI 241

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +++G C+AK  D+  RL + M+ SG  PD  T +AL++G CK  ++D+A  LL    + G
Sbjct: 242 ILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
                  +++LIDG  +  R D      E ++   +M   G+ PD + YTIL+ GFC+ G
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYD------EVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ AL++  +M +RG+  D   + ALI GFC  G + +A  +  E+ K    P   TYT
Sbjct: 356 MVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYT 415

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML------- 402
           ++I   C+NG      ++  +M + G  P++ T+NAL++GLCK G+L+ A  L       
Sbjct: 416 ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIG 475

Query: 403 ---------------------LDTML--------------------DLGVVPDDITYNIL 421
                                L TM+                    D GVVPD +TYN+L
Sbjct: 476 KNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVL 535

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + G CK  N     KL  E   KG   D   Y +L+
Sbjct: 536 INGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLI 571



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 164/348 (47%), Gaps = 42/348 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P     N L+   CK G+I +A  +   F K G       +++LI+G  +AK  DE 
Sbjct: 266 GCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEV 325

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M  +G+ PDV  Y+ LI G C+   +D A  +L++M +RGL+P+   +  LI G
Sbjct: 326 QEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKG 385

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            C  G +D A                             G + EAR+I ++M   G +P 
Sbjct: 386 FCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPS 445

Query: 275 KITYTILLDGFCKEGDLESALDIRKEM-----------IKRGIE--LDNVAFTALISGFC 321
            +T+  L+DG CK G+LE A  +  +M           + +G +  +D  +   ++   C
Sbjct: 446 IMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLC 505

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             G +++A ++L ++   G+ PD  TY ++I+ FCK  +    F+L +E++  GH P   
Sbjct: 506 ESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSV 565

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           TY  L++G  +  + ++A  +LD M+  G  P    Y  L+   C+ G
Sbjct: 566 TYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKG 613



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 167/402 (41%), Gaps = 76/402 (18%)

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           D M     P +   F++         S    N+++  L K+        + +E     + 
Sbjct: 69  DVMREQRRPELGFRFFIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQ 128

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA----------------- 204
               +F+ LI  + K+   ++       M+  G +PDV+TY++                 
Sbjct: 129 IPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAV 188

Query: 205 ------------------LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                             L+NGLCK  + DDA  +  EM ++G+ PN +I+T ++ G C+
Sbjct: 189 YNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQ 248

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR-------- 298
             R D      +  ++++ M  +G  PD IT   LLDGFCK G ++ A  +         
Sbjct: 249 AKRTD------DVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGY 302

Query: 299 ---------------------------KEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
                                      ++M K GIE D V +T LI GFC  G V  A  
Sbjct: 303 VLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALN 362

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           ML +M + GL PD   Y  +I  FC  G       L  E+  +   P   TY  L+ G+C
Sbjct: 363 MLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMC 422

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           ++G L  A  + + M +LG  P  +T+N L++G CK G  E+
Sbjct: 423 RNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEE 464



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 172/419 (41%), Gaps = 75/419 (17%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLID 102
           +  RG        +AL+  + D+G LD A       R     I    C         LI 
Sbjct: 367 MTQRGLSPDTYCYNALIKGFCDVGLLDKA-------RSLQLEISKNDCFPTSCTYTILIC 419

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD--EFGKR-- 158
            M R  L       + ++ + G SPS+  FN L+  LCK G++++A+ +F   E GK   
Sbjct: 420 GMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPS 479

Query: 159 --------------------------------------------GLHATAVSFNTLINGH 174
                                                       G+    +++N LING 
Sbjct: 480 LFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGF 539

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CKAKN++  F+L   ++  G  PD  TY  LI+G  + +R +DA  +L +M + G TP+ 
Sbjct: 540 CKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSS 599

Query: 235 VIFTTLIDGHCKNGRIDMAGD--MKEARKIVDEMCTNGLNPDKITYTI-LLDGFCKEGDL 291
            ++  L+   C+ G++ +A    +K  R +          P +   T+ L +   ++G+L
Sbjct: 600 AVYKCLMTWSCRKGKLSVAFSLWLKYLRSL----------PSQEDETLKLAEEHFEKGEL 649

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           E A+    EM  +    +   +T  + G C+  +  EA ++   + +  +  +  +  M+
Sbjct: 650 EKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVML 709

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           I+  CK+G+ +    +       G +      N L+  L    ++K+A  LL+ M   G
Sbjct: 710 INGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMNSAG 768


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 167/300 (55%), Gaps = 7/300 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V N L++ L K  +++DA  +FDE  +        +FN LI G C     ++   L  VM
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVM 232

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL-TPNDVIFTTLIDGHCKNGR 249
            G G  PD+ TY+ LI G CK N L+ A  +  ++    + +P+ V +T++I G+CK   
Sbjct: 233 SGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCK--- 289

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
              AG M+EA  ++D+M   G+ P  +T+ +L+DG+ K G++ +A +IR +MI  G   D
Sbjct: 290 ---AGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V FT+LI G+CR G+V +  R+  EM   G+ P+  TY+++I+  C          LL 
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           ++ S   +P    YN +++G CK G++  AN++++ M      PD IT+ IL+ GHC  G
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKG 466



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 154/299 (51%), Gaps = 7/299 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVM 190
           FN+L+  LC  GK + A  +       G     V++NTLI G CK+  L++   + K V 
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
            GS   PDV TY+++I+G CK  ++ +A  LL +M   G+ P +V F  L+DG+ K    
Sbjct: 269 SGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK---- 324

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             AG+M  A +I  +M + G  PD +T+T L+DG+C+ G +     + +EM  RG+  + 
Sbjct: 325 --AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNA 382

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             ++ LI+  C   ++++A  +L ++    + P    Y  VID FCK G       +++E
Sbjct: 383 FTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE 442

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           M      P   T+  L+ G C  G++  A  +   M+ +G  PD IT + LL    K G
Sbjct: 443 MEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG 501



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 160/325 (49%), Gaps = 23/325 (7%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCK------ 176
           G SP+  +   L+    ++GK+  A  ++   F   G     +  N+L+N   K      
Sbjct: 133 GVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEG---CCMVVNSLLNTLVKLDRVED 189

Query: 177 -AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
             K  DE  R +S         D  T++ LI GLC   + + A  LL  M   G  P+ V
Sbjct: 190 AMKLFDEHLRFQSC-------NDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIV 242

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TLI G CK+  ++ A +M +  K    +C+    PD +TYT ++ G+CK G +  A 
Sbjct: 243 TYNTLIQGFCKSNELNKASEMFKDVK-SGSVCS----PDVVTYTSMISGYCKAGKMREAS 297

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  +M++ GI   NV F  L+ G+ + G+++ AE +  +M+  G  PD  T+T +ID +
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G    GFRL +EM + G  P   TY+ L+N LC   +L  A  LL  +    ++P  
Sbjct: 358 CRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQP 417

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE 440
             YN +++G CK G   + + +  E
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEE 442



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 6/242 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +  ++   CK GK+++A  + D+  + G++ T V+FN L++G+ KA  +     
Sbjct: 274 SPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEE 333

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           ++  M   G  PDV T+++LI+G C+  ++     L  EM  RG+ PN   ++ LI+  C
Sbjct: 334 IRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
              R      + +AR+++ ++ +  + P    Y  ++DGFCK G +  A  I +EM K+ 
Sbjct: 394 NENR------LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK 447

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            + D + FT LI G C  G++ EA  +  +M+ +G  PD  T + ++ C  K G  K  +
Sbjct: 448 CKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAY 507

Query: 366 RL 367
            L
Sbjct: 508 HL 509



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 6/211 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G  P+   FNVL+    K G++  A+ +  +    G     V+F +LI+G+C+  
Sbjct: 302 DMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVG 361

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + +GFRL   M   GM P+ +TYS LIN LC ENRL  A  LL ++  + + P   ++ 
Sbjct: 362 QVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG CK G+++      EA  IV+EM      PDKIT+TIL+ G C +G +  A+ I 
Sbjct: 422 PVIDGFCKAGKVN------EANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            +M+  G   D +  ++L+S   + G   EA
Sbjct: 476 HKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 173/310 (55%), Gaps = 6/310 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G +P++  ++ L+H  C+ G   DA+ + D+   +G    +  +N +I   CK  
Sbjct: 373 EMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDG 432

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD+  RL   M+  G +PD+ TY+ +I  LC  + +++AE +   + E G+  N + + 
Sbjct: 433 KLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYN 492

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI    +NGR       +E  ++  EM  +G   D I+Y  L+   CKEG+++ ++ + 
Sbjct: 493 TLIHALLRNGR------WQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALL 546

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM+ +GI+ +N ++  LI+  C+ GKV +A  + +EML  GL PD  TY  +I+  CK 
Sbjct: 547 EEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKV 606

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G T     LL+++ ++   P + TYN L++  CK   L +A MLLD  +  G+VP++ T+
Sbjct: 607 GWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTW 666

Query: 419 NILLEGHCKH 428
            ++++   + 
Sbjct: 667 GMMVQNFVRQ 676



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 161/304 (52%), Gaps = 6/304 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V+ +++LMH LCK G+   A  + DE  ++G     V+++TL++  C+    D+ 
Sbjct: 343 GCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDA 402

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G   +   Y+ +I  LCK+ +LD A  L+ EM  +G  P+   + T+I  
Sbjct: 403 RAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYH 462

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C N   D+   M+EA  I   +   G+  + ITY  L+    + G  +  L +  EM+ 
Sbjct: 463 LCNN---DL---MEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLL 516

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G +LD +++  LI   C+ G V  +  +L EM+  G+KP++ +Y M+I+  CK G  + 
Sbjct: 517 HGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRD 576

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L KEM + G  P + TYN L+NGLCK G    A  LL+ + +  V PD +TYNIL+ 
Sbjct: 577 ALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILIS 636

Query: 424 GHCK 427
            HCK
Sbjct: 637 WHCK 640



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 185/381 (48%), Gaps = 26/381 (6%)

Query: 100 LIDRMMRTN-LPTV-TLGFYLEIL-----------DYGYSPSVYV--FNVLMHKLCKEGK 144
           L+DRMM    +P+V T GF L+ L             G  P V V   N ++     EGK
Sbjct: 269 LVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGK 328

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           +  A  +++  G +G      +++ L++G CK        R+   ME  G  P++ TYS 
Sbjct: 329 LARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYST 388

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           L++  C+    DDA  +L +M  +G + N   +  +I   CK+G++D      +A ++V 
Sbjct: 389 LLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLD------QATRLVQ 442

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM + G  PD  TY  ++   C    +E A  I + +I+ G+  + + +  LI    R G
Sbjct: 443 EMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNG 502

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +  E  R+  EML  G + D  +Y  +I   CK G+      LL+EM + G  P   +YN
Sbjct: 503 RWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYN 562

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSE 440
            L+N LCK G++++A  L   ML+ G+ PD +TYN L+ G CK    H      +KL +E
Sbjct: 563 MLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNE 622

Query: 441 KGLVSDYACYTSLVSKSSKYR 461
             +  D   Y  L+S   K R
Sbjct: 623 N-VHPDIVTYNILISWHCKVR 642



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 177/382 (46%), Gaps = 32/382 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLE-------------------ILDYGYSPSVYVFNVLMHKLC 140
           L  RM+R  +P  T  F +                    +  +G  P   ++  ++H L 
Sbjct: 164 LYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALV 223

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
            +G + +A M+ DE    G  A   +FN L+ G C    + E  RL   M   G  P V 
Sbjct: 224 AQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVV 283

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY  L+ GLC+  + D+A  +L  + E     N V+  T+I G    G++  A ++ E  
Sbjct: 284 TYGFLLQGLCRTRQADEACAMLGRLPE----VNVVMLNTVIRGCLTEGKLARATELYEM- 338

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
                M + G  PD  TY+IL+ G CK G   SA+ +  EM ++G   + V ++ L+  F
Sbjct: 339 -----MGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 393

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           CR G   +A  ML +ML  G   +   Y  +I   CK+G      RL++EM+S G  P +
Sbjct: 394 CRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDI 453

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            TYN ++  LC +  ++ A  +   +++ GVV + ITYN L+    ++G  ++  +L SE
Sbjct: 454 CTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASE 513

Query: 441 ---KGLVSDYACYTSLVSKSSK 459
               G   D   Y  L+    K
Sbjct: 514 MLLHGCQLDVISYNGLIKALCK 535



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 132/247 (53%), Gaps = 6/247 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G  P +  +N +++ LC    +++A+ +F    + G+ A  +++NTLI+   +  
Sbjct: 443 EMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNG 502

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              EG RL S M   G + DV +Y+ LI  LCKE  +D +  LL EM  +G+ PN+  + 
Sbjct: 503 RWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYN 562

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+  CK      AG +++A ++  EM   GL PD +TY  L++G CK G   +AL++ 
Sbjct: 563 MLINELCK------AGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLL 616

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +++    +  D V +  LIS  C+   + +A  +L + +  G+ P++ T+ M++  F + 
Sbjct: 617 EKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQ 676

Query: 359 GDTKTGF 365
                G+
Sbjct: 677 TVNLEGY 683



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSK------------------KGMGSSASLFASILE 51
           YST++H    + M   AR +L  +++K                   G    A+     ++
Sbjct: 386 YSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMK 445

Query: 52  TRGTHLPGLVLDALMIVYV-DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
           ++G   P +     MI ++ +   +++A   FR L +            LI  ++R    
Sbjct: 446 SQGCK-PDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRW 504

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              L    E+L +G    V  +N L+  LCKEG +  +  + +E   +G+     S+N L
Sbjct: 505 QEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNML 564

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           IN  CKA  + +   L   M   G+ PD+ TY+ LINGLCK      A  LL ++    +
Sbjct: 565 INELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 624

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
            P+ V +  LI  HCK   +D      +A  ++D+  + G+ P++ T+ +++  F ++
Sbjct: 625 HPDIVTYNILISWHCKVRLLD------DAAMLLDKAISGGIVPNERTWGMMVQNFVRQ 676



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 111/274 (40%), Gaps = 51/274 (18%)

Query: 221 LLHEMCER-GLTPN----DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           LL +M  R  ++P+    +V+ +TL    C            +A  +   M  + + P  
Sbjct: 128 LLDQMPRRFAVSPSFRSYNVVLSTLARADCH----------ADALLLYRRMLRDRVPPTT 177

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            T+ +     C+ G    AL + + M + G   D V +  +I      G V EA  +L E
Sbjct: 178 FTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDE 237

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK--- 392
           ML +G   D  T+  ++   C  G  +   RL+  M + G +P+V TY  L+ GLC+   
Sbjct: 238 MLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQ 297

Query: 393 ----------------------------HGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                                        G+L  A  L + M   G  PD  TY+IL+ G
Sbjct: 298 ADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHG 357

Query: 425 HCKHGN----PEDFDKLQSEKGLVSDYACYTSLV 454
            CK G         D+++ EKG   +   Y++L+
Sbjct: 358 LCKLGRFGSAVRMLDEME-EKGCAPNIVTYSTLL 390



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 259 ARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           A  ++D+M     ++P   +Y ++L    +      AL + + M++  +      F    
Sbjct: 125 ALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 184

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
              CR G+  +A  +LR M + G  PD   Y  VI      G       LL EM   G  
Sbjct: 185 RALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCA 244

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             V T+N L+ GLC  G+++ A  L+D M+  G +P  +TY  LL+G C+
Sbjct: 245 ADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCR 294


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 167/300 (55%), Gaps = 7/300 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V N L++ L K  +++DA  +FDE  +        +FN LI G C     ++   L  VM
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVM 232

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL-TPNDVIFTTLIDGHCKNGR 249
            G G  PD+ TY+ LI G CK N L+ A  +  ++    + +P+ V +T++I G+CK   
Sbjct: 233 SGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCK--- 289

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
              AG M+EA  ++D+M   G+ P  +T+ +L+DG+ K G++ +A +IR +MI  G   D
Sbjct: 290 ---AGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V FT+LI G+CR G+V +  R+  EM   G+ P+  TY+++I+  C          LL 
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           ++ S   +P    YN +++G CK G++  AN++++ M      PD IT+ IL+ GHC  G
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKG 466



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 154/299 (51%), Gaps = 7/299 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVM 190
           FN+L+  LC  GK + A  +       G     V++NTLI G CK+  L++   + K V 
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
            GS   PDV TY+++I+G CK  ++ +A  LL +M   G+ P +V F  L+DG+ K    
Sbjct: 269 SGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK---- 324

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             AG+M  A +I  +M + G  PD +T+T L+DG+C+ G +     + +EM  RG+  + 
Sbjct: 325 --AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNA 382

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             ++ LI+  C   ++++A  +L ++    + P    Y  VID FCK G       +++E
Sbjct: 383 FTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE 442

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           M      P   T+  L+ G C  G++  A  +   M+ +G  PD IT + LL    K G
Sbjct: 443 MEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG 501



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 160/325 (49%), Gaps = 23/325 (7%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCK------ 176
           G SP+  +   L+    ++GK+  A  ++   F   G     +  N+L+N   K      
Sbjct: 133 GVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEG---CCMVVNSLLNTLVKLDRVED 189

Query: 177 -AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
             K  DE  R +S         D  T++ LI GLC   + + A  LL  M   G  P+ V
Sbjct: 190 AMKLFDEHLRFQSC-------NDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIV 242

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TLI G CK+  ++ A +M +  K    +C+    PD +TYT ++ G+CK G +  A 
Sbjct: 243 TYNTLIQGFCKSNELNKASEMFKDVK-SGSVCS----PDVVTYTSMISGYCKAGKMREAS 297

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  +M++ GI   NV F  L+ G+ + G+++ AE +  +M+  G  PD  T+T +ID +
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G    GFRL +EM + G  P   TY+ L+N LC   +L  A  LL  +    ++P  
Sbjct: 358 CRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQP 417

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE 440
             YN +++G CK G   + + +  E
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEE 442



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 139/266 (52%), Gaps = 10/266 (3%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +  ++   CK GK+++A  + D+  + G++ T V+FN L++G+ KA  +     
Sbjct: 274 SPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEE 333

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           ++  M   G  PDV T+++LI+G C+  ++     L  EM  RG+ PN   ++ LI+  C
Sbjct: 334 IRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
              R      + +AR+++ ++ +  + P    Y  ++DGFCK G +  A  I +EM K+ 
Sbjct: 394 NENR------LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK 447

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            + D + FT LI G C  G++ EA  +  +M+ +G  PD  T + ++ C  K G  K  +
Sbjct: 448 CKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAY 507

Query: 366 RLLKEMR----SDGHLPAVETYNALM 387
            L +  R    ++   P  +T NA +
Sbjct: 508 HLNQIARKGQSNNVVPPETKTANATL 533



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 6/211 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G  P+   FNVL+    K G++  A+ +  +    G     V+F +LI+G+C+  
Sbjct: 302 DMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVG 361

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + +GFRL   M   GM P+ +TYS LIN LC ENRL  A  LL ++  + + P   ++ 
Sbjct: 362 QVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG CK G+++      EA  IV+EM      PDKIT+TIL+ G C +G +  A+ I 
Sbjct: 422 PVIDGFCKAGKVN------EANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            +M+  G   D +  ++L+S   + G   EA
Sbjct: 476 HKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 226/456 (49%), Gaps = 21/456 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLV 61
           FR +  ++  + H +       + R +L+ +V ++G GS+ SL   +  + R   L  +V
Sbjct: 111 FRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLCELLCNSFRDWDLNNVV 170

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            D L   Y     + DA+     ++    ++       L+  +  T+   +    Y EI 
Sbjct: 171 WDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTD---IMWDVYNEIK 227

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G   + Y   +L+  LC++ +++DA     E G      + VSFN L++G CK  ++D
Sbjct: 228 ASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVD 287

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
                  +M   G+ PDVY+Y+ L++GLC    +++A    ++M   G+ P+ V +  L 
Sbjct: 288 VAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILA 347

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G        + G +  A K+V  M  NGLNPD +TYTIL+ G C+ G++E +  ++++M
Sbjct: 348 NG------FRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKM 401

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           + +G++L  V +T L+S  C+ G++ EA  +L EM  +GLKPD  TY+         G  
Sbjct: 402 LSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS--------RGAV 453

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L +EM S    P     +A+++GL + G +  A M  D++    V  + I YNI+
Sbjct: 454 EEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIM 513

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           ++G+ K GN  +  +      EKG+      + SL+
Sbjct: 514 IDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 549



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 198/401 (49%), Gaps = 71/401 (17%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P +  + +L+   C+ G I+++  + ++   +GL  + V++  L++  CK+  +DE 
Sbjct: 370 GLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEA 429

Query: 184 FRLKSVMEGSGMRPDVYTYS---------------------------ALINGLCKENRLD 216
             L   ME  G++PD+ TYS                           A+I+GL ++  + 
Sbjct: 430 VILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAIS 489

Query: 217 DA--------------ELLLH---------------------EMCERGLTPNDVIFTTLI 241
           +A              E++L+                     ++ E+G++P  V F +LI
Sbjct: 490 EAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 549

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G CK G+      + EA K++D +  +GL P  +TYT L++G+C+EGD+ S  D+  EM
Sbjct: 550 YGFCKKGK------LAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEM 603

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             + I+   + +T ++ G C+ G++ E+ ++L+ M   GL PD  TY  VI  FCK  D 
Sbjct: 604 EAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDL 663

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +  F+L  +M      P+  TYN L+NGLC +G LK+A+ LL T+ D  +    + Y  +
Sbjct: 664 QKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTI 723

Query: 422 LEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSK 459
           ++ HC  G+ ++   F     E+G       Y++++++  K
Sbjct: 724 IKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 764



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 173/359 (48%), Gaps = 6/359 (1%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +++AI+ +  +        +  C  +I  +      +    ++  +     +  + ++
Sbjct: 451 GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILY 510

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+++    K G I +A   + +  ++G+  T V+FN+LI G CK   L E  +L   ++ 
Sbjct: 511 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 570

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P   TY+ L+NG C+E  +     +LHEM  + + P  + +T ++ G CK GR   
Sbjct: 571 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGR--- 627

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              + E+ +++  M   GL PD+ITY  ++  FCK  DL+ A  +  +M++  ++   V 
Sbjct: 628 ---LHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVT 684

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  LI+G C  G + +A+R+L  +    ++     YT +I   C  GD +       +M 
Sbjct: 685 YNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMV 744

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
             G   ++  Y+A++N LCK   + +A      ML  G+ PD     ++L    + G+P
Sbjct: 745 ERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDP 803



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 152/297 (51%), Gaps = 6/297 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y +I++ G SP++  FN L++  CK+GK+ +A  + D     GL  T+V++ TL+NG+C+
Sbjct: 530 YKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCE 589

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             ++   F +   ME   ++P   TY+ ++ GLCKE RL ++  LL  M  RGL P+ + 
Sbjct: 590 EGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQIT 649

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T+I   CK      A D+++A ++ ++M  + L P  +TY +L++G C  G+L+ A  
Sbjct: 650 YNTVIQSFCK------AHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADR 703

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +   +  + I L  VA+T +I   C  G V  A     +M++ G +     Y+ VI+  C
Sbjct: 704 LLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLC 763

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
           K             M + G  P  +    ++N   + G   +   +   M+  G++P
Sbjct: 764 KRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 820



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 225/484 (46%), Gaps = 52/484 (10%)

Query: 15  HFLVAHKMHSQARD-------LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H + A K+H ++ D       +  +++  +  G+S  L+    +T  + L    +D +++
Sbjct: 29  HSVSAAKLHDESADASIPNDAVRQILIGLRSFGASKFLWGHHFQTLASVLNTHQVDQILL 88

Query: 68  -VYVDLGFLDDAIQCFRLLRKHY----FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
            + VD    D A+  F LLR  Y     R+       ++ R  ++      L   +E   
Sbjct: 89  SLRVDNS--DSALFLFDLLRNEYGFRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEG 146

Query: 123 YGYSPSV---------------YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
            G +PS+                V+++L     +   + DA  V  +     L  +  ++
Sbjct: 147 SGSAPSLCELLCNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATY 206

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           N+L+      ++ D  + + + ++ SG+  + YT   LI+GLC+++RL DA   L E   
Sbjct: 207 NSLLY---NLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGG 263

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
               P+ V F  L+ G CK G +D+A      +     M   GL PD  +Y ILL G C 
Sbjct: 264 EEFGPSVVSFNALMSGFCKMGSVDVA------KSFFCMMIKYGLLPDVYSYNILLHGLCV 317

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G +E AL+   +M   G+E D V +  L +GF   G +  A ++++ ML  GL PD  T
Sbjct: 318 AGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVT 377

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           YT++I   C+ G+ +  F+L ++M S G   ++ TY  L++ LCK G++  A +LL  M 
Sbjct: 378 YTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEME 437

Query: 408 DLGVVPDDITYNI--------LLEGHC-KHGNPEDF--DKLQS---EKGLVSDYACYTSL 453
            +G+ PD +TY+         L E  C K   P  F    + S   EKG +S+   Y   
Sbjct: 438 VIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDS 497

Query: 454 VSKS 457
           V+KS
Sbjct: 498 VTKS 501


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 235/470 (50%), Gaps = 20/470 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS--KKGMGSSASLFASILET-RGTHLPG 59
           F  ++ A+ T+V+ L    MH +   LL  IV    K    +  LF  +LE+ +      
Sbjct: 120 FSRSIDAFRTVVNVLALAGMHMEVYALLRDIVCYYNKVNLDAFELFPILLESPKDAARSV 179

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +V D L+ V+     L++A+  F   +K    +  R C  L+  +   N        + E
Sbjct: 180 IVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEE 239

Query: 120 ILDYGYSPSVYVFNVLMHKLCK----EGKI--KDAQMVFDEFGKRGLHATAVSFNTLING 173
           +   G  P+V+ + ++M+  CK    E  I  + A  + +E  + G   T V+++T I G
Sbjct: 240 MKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYG 299

Query: 174 HCKAKNLDEGFR-LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
            C+   ++     ++S++  +G+  +VY Y+A+I+GLCK+  LD+A  +L EM   G++P
Sbjct: 300 LCRVGYVESALDFVRSLISANGL-VNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISP 358

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   ++ LI G CK G      D+++   +++EM  + + P  ++Y+ L  G CK+   +
Sbjct: 359 DVYTYSILIHGFCKQG------DVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSD 412

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            +LDI +++   G + D  A++ LI GFC  G +  A +++ EM++  L PD + +  ++
Sbjct: 413 ISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLV 472

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             FCK G           M   G LP++ T N +++  C+ G+++ A  L++ M   G+ 
Sbjct: 473 HGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIF 532

Query: 413 PDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSK 459
           P+  TYN ++   CK    E   +   L  ++ ++     Y++L+   +K
Sbjct: 533 PNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAK 582



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 196/415 (47%), Gaps = 69/415 (16%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G SP VY +++L+H  CK+G ++    + +E     +  + VS+++L +G CK +
Sbjct: 350 EMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKR 409

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D    +   +  +G + D   YS LI G C +  LD A  L+ EM    L P+   F 
Sbjct: 410 LSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFE 469

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           +L+ G CK G    A                             G ++EA  +++EM T 
Sbjct: 470 SLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQ 529

Query: 270 GLNPDKITY-----------------------------------TILLDGFCKEGDLESA 294
           G+ P+  TY                                   + L+DGF K+ + + A
Sbjct: 530 GIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKA 589

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L +   M+K G+  D VA+T LI+  C   ++ EA  + ++M + G+ PD  +YT VI  
Sbjct: 590 LMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAG 649

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           FC+ GD +  + L  EM   GHLP V TY +L++G CK  ++  A+ML+D M   G+ PD
Sbjct: 650 FCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPD 709

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSL--VSKSSKYRQKR 464
            +TYN+L+  H + GN +   ++     E G++ D+  Y  L  + K+ K + +R
Sbjct: 710 VVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMMLEWLLKAKKLKTRR 764



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 153/290 (52%), Gaps = 6/290 (2%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            ++L+  +  +G   +A++ F ++ +         C  +ID   R       L    E+ 
Sbjct: 468 FESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQ 527

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G  P+++ +N ++++LCKE K + A  +F    KR +  + V ++TLI+G  K  N  
Sbjct: 528 TQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQ 587

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   L + M   G+ PD+  Y+ LIN LC  +R+ +A  L  +M E G+TP+ + +T++I
Sbjct: 588 KALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVI 647

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C+       GDM++A  + +EM   G  P  +TYT L+DG+CK   ++ A  +  EM
Sbjct: 648 AGFCR------IGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEM 701

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
            ++GI  D V +  LI+   R G + +A  ML EM + G+ PD  TY M+
Sbjct: 702 KRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMML 751


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 204/412 (49%), Gaps = 44/412 (10%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           VD+G  DDA+  + L+ +         C  ++D   +       +  + EIL  G++ S 
Sbjct: 448 VDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKST 507

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             FN ++  LCK GK+ +A  VFD   + GL    +++ TL +G+CK  N+ E F++K V
Sbjct: 508 VAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGV 567

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ME   M   +  Y++LI+GL K  +L+D   LL EM  RGL+PN V + TLI G C   +
Sbjct: 568 MERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQK 627

Query: 250 IDMAGDMKEARKIVDEMCTNGLNP---------------DKIT-YTILLDGF-------- 285
           +D      +A  +  EM   G  P               D+I+  T++LD          
Sbjct: 628 LD------KAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILAV 681

Query: 286 ---CKEGDLESALDIRKEMIKRGIE--------LDNVAFTALISGFCRGGKVVEAERMLR 334
              C +  +++ L +  + I   ++         +N+ +   I G C+ GK+ EA  +L 
Sbjct: 682 HNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLS 741

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            ++  G  PD+ TY  +I     +G+    F+L  EM   G +P +  YNAL+NGLCK G
Sbjct: 742 VLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLG 801

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGL 443
            +  A  L   +   G+VP+ +TYNIL+  +C+ G+ +   +L+   +E+G+
Sbjct: 802 NIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREKMTEEGI 853



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/501 (26%), Positives = 244/501 (48%), Gaps = 44/501 (8%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLL------HLIVSKKGMGSSASLFASILETRGT 55
           H+R    +YS ++H L   ++  +A  +L      H   + +       +F S+ +  G 
Sbjct: 96  HYRPHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAVCNHVF-SVYKEFG- 153

Query: 56  HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTL 114
                V D LM  + + G    A+  F  + +   R+P  R C  L+ ++++     V +
Sbjct: 154 -FCSGVFDMLMKAFAERGMTKHALYVFDEMSR-IGRVPGLRSCSFLLGKLVQKGEGRVAV 211

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
             + +I+  G  P VY+ +++++  C+ G++  A  V ++  K GL    V++N L+NG+
Sbjct: 212 MVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGY 271

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPN 233
               + +   R+  +M   G+  +V T + L+ G CK+ ++D+AE LL E+ E   L  +
Sbjct: 272 VGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVD 331

Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
           + ++  L+DG+C+ GR++ A                             G + EA ++  
Sbjct: 332 ERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFV 391

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
            M    L PD  +Y  LLDG+C+EG +  A  + +EM+  GI    V +  +I G    G
Sbjct: 392 GMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVG 451

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
              +A  +   M++ G+ P++ +   ++DCF K GD+     L KE+   G   +   +N
Sbjct: 452 SYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFN 511

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEK 441
            +++GLCK G+L  A  + D M +LG+ PD+ITY  L +G+CK+GN ++  +++     +
Sbjct: 512 TMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQ 571

Query: 442 GLVSDYACYTSLVSKSSKYRQ 462
            + +    Y SL+    K R+
Sbjct: 572 AMSASIEMYNSLIDGLFKIRK 592



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 179/340 (52%), Gaps = 17/340 (5%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V+ VL+   C+ G+++DA  + DE  + GL    V  NTLI G+CK   + E  R+   M
Sbjct: 334 VYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGM 393

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
               ++PD Y+Y+ L++G C+E ++  A +L  EM   G+TP  V + T+I G    G  
Sbjct: 394 VDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSY 453

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D      +A  +   M   G+ P++I+   +LD F K GD + A+ + KE++ RG     
Sbjct: 454 D------DALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKST 507

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           VAF  +ISG C+ GK++EA  +   M ++GL PD+ TY  + D +CKNG+ +  F++   
Sbjct: 508 VAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGV 567

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M       ++E YN+L++GL K  +L +   LL  M   G+ P+ +TY  L+ G C   +
Sbjct: 568 MERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWC---D 624

Query: 431 PEDFDKL------QSEKGLVSDYACYTSLVSKSSKYRQKR 464
            +  DK         E+G   +    + +V  SS YR  R
Sbjct: 625 EQKLDKAFHLYFEMIERGFTPNVVVCSKIV--SSLYRDDR 662



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 227/464 (48%), Gaps = 36/464 (7%)

Query: 4   RLTLHAYSTMVHFLVA-----HKMHSQARD-LLHLIVSKKGMGSSASLFASILETRGT-- 55
           RL LH  + +  F +A     ++ HS +   LLH++   +    + ++   +++   T  
Sbjct: 76  RLRLHPSACLSFFHLATQNSHYRPHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNN 135

Query: 56  HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           +    V + +  VY + GF       F +L K +     RG            +    L 
Sbjct: 136 YRAYAVCNHVFSVYKEFGFCSGV---FDMLMKAF---AERG------------MTKHALY 177

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P +   + L+ KL ++G+ + A MVFD+    G+       + ++N HC
Sbjct: 178 VFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHC 237

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   +D    +   M   G+ P+V TY+ L+NG       +  E +L  M ERG++ N V
Sbjct: 238 QVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVV 297

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESA 294
             T L+ G+CK G++D      EA K++ E+  +  L  D+  Y +L+DG+C+ G +E A
Sbjct: 298 TCTMLMRGYCKKGKMD------EAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDA 351

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           + IR EM++ G++++ V    LI G+C+ G+V EAER+   M+   LKPD  +Y  ++D 
Sbjct: 352 VRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDG 411

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +C+ G     F L +EM  DG  P V TYN ++ GL   G   +A  L   M++ GV P+
Sbjct: 412 YCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPN 471

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           +I+   +L+   K G+ +    L  E   +G       + +++S
Sbjct: 472 EISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMIS 515



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 56/112 (50%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G+ P  + +  L+H     G + +A  + DE  ++GL      +N LING CK  N
Sbjct: 743 LMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGN 802

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +D   RL   +   G+ P+  TY+ LI   C+   LD A  L  +M E G++
Sbjct: 803 IDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREKMTEEGIS 854


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 168/337 (49%), Gaps = 42/337 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLD- 181
           G +P+ Y +  ++   CK G++ +A  VFDE   +G +   AV +N LI G+C    LD 
Sbjct: 550 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 609

Query: 182 ----------------------------------EGFRLKSVMEGSGMRPDVYTYSALIN 207
                                             E + L   M G G+ PDV+TY+ LIN
Sbjct: 610 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILIN 669

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G CKE  +  A  +   M  RG+    V +T LI    K G++      +E  K+ DE  
Sbjct: 670 GHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQV------QETDKLFDEAV 723

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G+ PD + Y  L++     G+++ A +I  EM K+ I  D+V +  L+ G C  G+V 
Sbjct: 724 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 783

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA +++ EM + G++PD  TY  +I  +   GD K   R+  EM + G  P + TYNAL+
Sbjct: 784 EARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALI 843

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            GLCK+GQ  +A  ++  M++ G+ PDD TY  L+EG
Sbjct: 844 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 880



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 26/383 (6%)

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGF---------------YLEILDYGYSPSVYVFNVLM 136
           +P+     L   M R  LP  T  F                LE+L     P+   +N ++
Sbjct: 467 LPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 526

Query: 137 HKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG- 194
              C  G+++ A  +  E  +RG +     ++ T+I+G CK   +DE  ++   M   G 
Sbjct: 527 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 586

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           ++P+   Y+ALI G C + +LD A L    M ERG+      +  L+     +GR     
Sbjct: 587 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR----- 641

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA ++V+EM   GL PD  TY IL++G CKEG+++ AL+I + M +RG+    V +T
Sbjct: 642 -GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 700

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI    + G+V E +++  E ++ G++PD   Y  +I+    +G+    F ++ EM   
Sbjct: 701 ALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 760

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              P   TYN LM GLC  G++  A  L+D M + G+ PD +TYN L+ G+   G+ +D 
Sbjct: 761 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDA 820

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
            ++++E   KG       Y +L+
Sbjct: 821 LRIRNEMMNKGFNPTLLTYNALI 843



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 7/328 (2%)

Query: 69  YVDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +  +G +D+A++ F  +L K   +  A     LI            L +   +++ G + 
Sbjct: 565 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 624

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+L+H L  +G+  +A  + +E G +GL     ++N LINGHCK  N+ +   + 
Sbjct: 625 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 684

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+R  V TY+ALI  L K+ ++ + + L  E   RG+ P+ V++  LI+ H  +
Sbjct: 685 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 744

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G ID       A +I+ EM    + PD +TY  L+ G C  G ++ A  +  EM +RGI+
Sbjct: 745 GNID------RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 798

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V +  LISG+   G V +A R+  EM+  G  P   TY  +I   CKNG       +
Sbjct: 799 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 858

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +KEM  +G  P   TY +L+ GL    +
Sbjct: 859 VKEMVENGITPDDSTYISLIEGLTTEDE 886



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 31/202 (15%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   +V  +  L++ L K+G++++   +FDE  +RG+    V +N LIN H  + N+D  
Sbjct: 691 GVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA 750

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F +   ME   + PD  TY+ L+ GLC   R+D+A  L+ EM ERG+ P+ V + TLI G
Sbjct: 751 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 810

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           +   G +  A                             G   +A  +V EM  NG+ PD
Sbjct: 811 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 870

Query: 275 KITYTILLDGFCKEGDLESALD 296
             TY  L++G   E   E A+D
Sbjct: 871 DSTYISLIEGLTTED--ERAID 890



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P +  +N L+     +G +KDA  + +E   +G + T +++N LI G CK  
Sbjct: 791 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 850

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR--LDDAEL 220
             D+   +   M  +G+ PD  TY +LI GL  E+   +DD  L
Sbjct: 851 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 894


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 168/322 (52%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++    P+V +F+ ++  LCKEGK+ +A  V D   KRG+    V++N L++GHC   
Sbjct: 259 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 318

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++   M   G  PDV +YS LING CK  R++ A  L  EMC + L PN V ++
Sbjct: 319 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 378

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C  GR      +++A  +  EM T G  PD ++Y ILLD  CK   L+ A+ + 
Sbjct: 379 TLMHGLCHVGR------LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL 432

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K +    ++ D   +T +I G CR G++  A  +   +   GL P+  TYT++I+  C+ 
Sbjct: 433 KAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQ 492

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      +L  EM+  G+ P   TYN +  G  ++ +      LL  ML  G   D  T 
Sbjct: 493 GLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTS 552

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
            +L+E     G  +   ++ SE
Sbjct: 553 TVLVEMLSDDGLDQSVKQILSE 574



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 172/319 (53%), Gaps = 10/319 (3%)

Query: 114 LGFYL----EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           LGF      +IL  G+ P++  FN L+  LC EGKI +   +FD+    G     V++ T
Sbjct: 110 LGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGT 169

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     RL   ME    +PDV  Y+++I+ LCK+ ++  A  L  EM  +G
Sbjct: 170 LINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQG 229

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++P+   + +LI   C         + K    +++EM  + + P+ + ++ ++D  CKEG
Sbjct: 230 ISPSIFTYNSLIHALCN------LCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEG 283

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +  A D+   MIKRG+E + V + AL+ G C   ++ EA ++   M+  G  PD  +Y+
Sbjct: 284 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 343

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I+ +CK    +    L +EM     +P   TY+ LM+GLC  G+L++A  L   M+  
Sbjct: 344 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 403

Query: 410 GVVPDDITYNILLEGHCKH 428
           G +PD ++Y ILL+  CK+
Sbjct: 404 GQIPDFVSYCILLDYLCKN 422



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 190/397 (47%), Gaps = 11/397 (2%)

Query: 70  VDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           ++   LDDA+  F R+L  H     A   + LI      +  TV L    ++  +G  P+
Sbjct: 35  LNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTV-LSLSHQMDSFGIPPN 93

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +Y  N+L++  C   ++  A  V  +  K G      +FNTLI G C    + E   L  
Sbjct: 94  IYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFD 153

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M G G +P+V TY  LINGLCK      A  LL  M +    P+ V++T++ID  CK+ 
Sbjct: 154 KMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 213

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       +A  +  EM   G++P   TY  L+   C   + +    +  EM+   I  
Sbjct: 214 QV------TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMP 267

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + V F+ ++   C+ GKV+EA  ++  M+K G++P+  TY  ++D  C   +     ++ 
Sbjct: 268 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 327

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G  P V +Y+ L+NG CK  +++ A  L + M    ++P+ +TY+ L+ G C  
Sbjct: 328 DTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV 387

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           G  +D   L  E   +G + D+  Y  L+    K R+
Sbjct: 388 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRR 424



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 139/303 (45%), Gaps = 6/303 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G    A     ++  RG     +  +ALM  +     +D+A++ F  +    F     
Sbjct: 281 KEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVV 340

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+   +       +  + E+      P+   ++ LMH LC  G+++DA  +F E 
Sbjct: 341 SYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEM 400

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             RG     VS+  L++  CK + LDE   L   +EGS M PD+  Y+ +I+G+C+   L
Sbjct: 401 VTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGEL 460

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           + A  L   +  +GL PN   +T +I+G C+ G       + EA K+  EM   G +P+ 
Sbjct: 461 EAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGL------LAEASKLFGEMKRKGYSPNG 514

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY ++  GF +  +    + + +EM+ RG   D    T L+      G     +++L E
Sbjct: 515 CTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSE 574

Query: 336 MLK 338
            L+
Sbjct: 575 FLQ 577


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 172/319 (53%), Gaps = 10/319 (3%)

Query: 114 LGFYL----EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           LGF      +IL  G+ P++  FN L+  LC EGKI +   +FD+    G     V++ T
Sbjct: 119 LGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGT 178

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     RL   ME    +PDV  Y+++I+ LCK+ ++  A  L  EM  +G
Sbjct: 179 LINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQG 238

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++P+   + +LI   C         + K    +++EM  + + P+ + ++ ++D  CKEG
Sbjct: 239 ISPSIFTYNSLIHALCN------LCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEG 292

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +  A D+   MIKRG+E + V + AL+ G C   ++ EA ++   M+  G  PD  +Y+
Sbjct: 293 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 352

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I+ +CK    +    L +EM     +P   TY+ LM+GLC  G+L++A  L   M+  
Sbjct: 353 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 412

Query: 410 GVVPDDITYNILLEGHCKH 428
           G +PD ++Y ILL+  CK+
Sbjct: 413 GQIPDFVSYCILLDYLCKN 431



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 168/322 (52%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++    P+V +F+ ++  LCKEGK+ +A  V D   KRG+    V++N L++GHC   
Sbjct: 268 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 327

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++   M   G  PDV +YS LING CK  R++ A  L  EMC + L PN V ++
Sbjct: 328 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 387

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C  GR      +++A  +  EM T G  PD ++Y ILLD  CK   L+ A+ + 
Sbjct: 388 TLMHGLCHVGR------LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL 441

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K +    ++ D   +T +I G CR G++  A  +   +   GL P+  TYT++I+  C+ 
Sbjct: 442 KAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQ 501

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      +L  EM+  G+ P   TYN +  G  ++ +      LL  ML  G   D  T 
Sbjct: 502 GLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTS 561

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
            +L+E     G  +   ++ SE
Sbjct: 562 TVLVEMLSDDGLDQSVKQILSE 583



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 190/397 (47%), Gaps = 11/397 (2%)

Query: 70  VDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           ++   LDDA+  F R+L  H     A   + LI      +  TV L    ++  +G  P+
Sbjct: 44  LNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTV-LSLSHQMDSFGIPPN 102

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +Y  N+L++  C   ++  A  V  +  K G      +FNTLI G C    + E   L  
Sbjct: 103 IYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFD 162

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M G G +P+V TY  LINGLCK      A  LL  M +    P+ V++T++ID  CK+ 
Sbjct: 163 KMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 222

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       +A  +  EM   G++P   TY  L+   C   + +    +  EM+   I  
Sbjct: 223 QV------TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMP 276

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + V F+ ++   C+ GKV+EA  ++  M+K G++P+  TY  ++D  C   +     ++ 
Sbjct: 277 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 336

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G  P V +Y+ L+NG CK  +++ A  L + M    ++P+ +TY+ L+ G C  
Sbjct: 337 DTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV 396

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           G  +D   L  E   +G + D+  Y  L+    K R+
Sbjct: 397 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRR 433



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 6/212 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   ++ LMH LC  G+++DA  +F E   RG     VS+  L++  CK + LDE   L
Sbjct: 381 PNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIAL 440

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +EGS M PD+  Y+ +I+G+C+   L+ A  L   +  +GL PN   +T +I+G C+
Sbjct: 441 LKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQ 500

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G       + EA K+  EM   G +P+  TY ++  GF +  +    + + +EM+ RG 
Sbjct: 501 QGL------LAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGF 554

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             D    T L+      G     +++L E L+
Sbjct: 555 SADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 586



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 63/153 (41%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           LD+AI   + +         +    +ID M R          +  +   G  P+V+ + +
Sbjct: 434 LDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTI 493

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           +++ LC++G + +A  +F E  ++G      ++N +  G  +      G +L   M   G
Sbjct: 494 MINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARG 553

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
              DV T + L+  L  +      + +L E  +
Sbjct: 554 FSADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 586


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 183/349 (52%), Gaps = 18/349 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           CRC      +T      LG   +++  GY P    FN L+  L  EGK+ +A ++ D   
Sbjct: 124 CRCC-----KTCFAYSVLG---KVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 175

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G     V++N+++NG C++ +      L   ME   ++ DV+TYS +I+ LC++  +D
Sbjct: 176 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 235

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L  EM  +G+  + V + +L+ G CK      AG   +   ++ +M +  + P+ I
Sbjct: 236 AAISLFKEMETKGIKSSVVTYNSLVRGLCK------AGKWNDGALLLKDMVSREIVPNVI 289

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+ +LLD F KEG L+ A ++ KEMI RGI  + + +  L+ G+C   ++ EA  ML  M
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           ++    PD  T+T +I  +C       G ++ + +   G +    TY+ L+ G C+ G++
Sbjct: 350 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 409

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           K A  L   M+  GV+PD +TY ILL+G C +G  E     F+ LQ  K
Sbjct: 410 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 458



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 167/297 (56%), Gaps = 6/297 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FNVL+    KEGK+++A  ++ E   RG+    +++NTL++G+C    L E   +
Sbjct: 286 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 345

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M  +   PD+ T+++LI G C   R+DD   +   + +RGL  N V ++ L+ G C+
Sbjct: 346 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 405

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G+I      K A ++  EM ++G+ PD +TY ILLDG C  G LE AL+I +++ K  +
Sbjct: 406 SGKI------KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 459

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +L  V +T +I G C+GGKV +A  +   +   G+KP+  TYT++I   CK G       
Sbjct: 460 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 519

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           LL++M  DG+ P   TYN L+    + G L  +  L++ M   G   D  +  ++++
Sbjct: 520 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 576



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 190/376 (50%), Gaps = 41/376 (10%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +++ + R+   ++ L    ++ +      V+ ++ ++  LC++G I  A  +F E   +G
Sbjct: 189 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 248

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + ++ V++N+L+ G CKA   ++G  L   M    + P+V T++ L++   KE +L +A 
Sbjct: 249 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 308

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  RG++PN + + TL+DG+C   R      + EA  ++D M  N  +PD +T+T
Sbjct: 309 ELYKEMITRGISPNIITYNTLMDGYCMQNR------LSEANNMLDLMVRNKCSPDIVTFT 362

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G+C    ++  + + + + KRG+  + V ++ L+ GFC+ GK+  AE + +EM+  
Sbjct: 363 SLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSH 422

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD------------------------- 374
           G+ PD  TY +++D  C NG  +    + ++++                           
Sbjct: 423 GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDA 482

Query: 375 ----------GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                     G  P V TY  +++GLCK G L  AN+LL  M + G  P+D TYN L+  
Sbjct: 483 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 542

Query: 425 HCKHGNPEDFDKLQSE 440
           H + G+     KL  E
Sbjct: 543 HLRDGDLTASAKLIEE 558



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 25/383 (6%)

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           ++  RL++ H  +  +          +RT+L   T+  +    +  +S S+   NV   +
Sbjct: 1   MKALRLIQPHLLKTGS----------LRTDL-LCTISSFFSSCERDFS-SISNGNVCFRE 48

Query: 139 LCKEG----KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
             + G    K  DA  +F E  +     + V F+   +   + K  +        +E +G
Sbjct: 49  RLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNG 108

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +  ++YT + +IN  C+  +   A  +L ++ + G  P+   F TLI G      + + G
Sbjct: 109 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKG------LFLEG 162

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            + EA  +VD M  NG  PD +TY  +++G C+ GD   ALD+ ++M +R ++ D   ++
Sbjct: 163 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 222

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            +I   CR G +  A  + +EM   G+K    TY  ++   CK G    G  LLK+M S 
Sbjct: 223 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 282

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
             +P V T+N L++   K G+L+ AN L   M+  G+ P+ ITYN L++G+C      + 
Sbjct: 283 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 342

Query: 435 DK---LQSEKGLVSDYACYTSLV 454
           +    L        D   +TSL+
Sbjct: 343 NNMLDLMVRNKCSPDIVTFTSLI 365



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 201/477 (42%), Gaps = 80/477 (16%)

Query: 50  LETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           L  R    P +V   +L+  Y  +  +DD ++ FR + K      A     L+    ++ 
Sbjct: 348 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 407

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              +    + E++ +G  P V  + +L+  LC  GK++ A  +F++  K  +    V + 
Sbjct: 408 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 467

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           T+I G CK   +++ + L   +   G++P+V TY+ +I+GLCK+  L +A +LL +M E 
Sbjct: 468 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 527

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD----- 283
           G  PND  + TLI  H ++      GD+  + K+++EM + G + D  +  +++D     
Sbjct: 528 GNAPNDCTYNTLIRAHLRD------GDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSA 581

Query: 284 ------GFCKEGDLESALDIRKEMIKRGIELDNVAFTALI------------SGFCRGGK 325
                  +C     +S  D+ +      I L ++ F  +             +   RG  
Sbjct: 582 MKRLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMN 641

Query: 326 VVEAERMLR----------------------EMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             E  R LR                      E+L  GL  +DA   +++D          
Sbjct: 642 SAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGL--EDAECDLMVDLELPTDAVHY 699

Query: 364 GFR------------------LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             R                  L KEM   G  P   TY++L++G CK  +L  AN +LD 
Sbjct: 700 AHRAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDL 759

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           M+  G    DI Y  LL G  +        + +  + L  D +C T+  S+SS +R 
Sbjct: 760 MVTKG--DSDIRY--LLAGLMRK--KRKGSETEGWENLPDDLSCSTA--SRSSNFRS 808


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   +  L         +IL  GY P     N  +   C +G+I  A    D+    G
Sbjct: 111 LINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALG 170

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            H   VS+ TLING CK         L   ++G  ++ DV  YS +I+ +CK+  ++DA 
Sbjct: 171 FHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAF 230

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  R ++ N V ++ LI G C      + G +K+A  + ++M +  +NPD  T+ 
Sbjct: 231 DLYSEMVSRRISSNIVTYSALISGFC------IVGKLKDAIGLFNKMTSENINPDVYTFN 284

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+D FCKEG ++ A +    M+K+GI+ D V + +L+ G+C   +V  A+ +L  M   
Sbjct: 285 ILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHR 344

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+     +Y +VI+ FCK        +L KEM      P V TYN+L++GLCK G++  A
Sbjct: 345 GVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYA 404

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             L+D M D G  PD ITY+ +L+  CK+
Sbjct: 405 LELIDLMHDRGQQPDIITYSSILDALCKN 433



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 168/322 (52%), Gaps = 15/322 (4%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V LGF+L+ + YG          L++ LCK G+ + A  +      + +    V ++T+I
Sbjct: 167 VALGFHLDQVSYG---------TLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTII 217

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +  CK KN+++ F L S M    +  ++ TYSALI+G C   +L DA  L ++M    + 
Sbjct: 218 DSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENIN 277

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   F  L+D  CK GR+      KEA+  +  M   G+ PD +TY  L+DG+C   ++
Sbjct: 278 PDVYTFNILVDAFCKEGRV------KEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEV 331

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A  I   M  RG+     ++  +I+GFC+   V +A ++ +EM    + P+  TY  +
Sbjct: 332 NMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSL 391

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID  CK+G       L+  M   G  P + TY+++++ LCK+  +  A  LL  + D G+
Sbjct: 392 IDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGI 451

Query: 412 VPDDITYNILLEGHCKHGNPED 433
            P+  TY IL++G CK G  ED
Sbjct: 452 RPNMYTYTILIDGLCKGGRLED 473



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 175/321 (54%), Gaps = 9/321 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V +++ ++  +CK+  + DA  ++ E   R + +  V+++ LI+G C    L +   L +
Sbjct: 210 VVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFN 269

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PDVYT++ L++  CKE R+ +A+  L  M ++G+ P+ V + +L+DG+C   
Sbjct: 270 KMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVN 329

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            ++MA      + I++ M   G+     +Y I+++GFCK   ++ A+ + KEM  + I  
Sbjct: 330 EVNMA------KSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFP 383

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + + + +LI G C+ G++  A  ++  M   G +PD  TY+ ++D  CKN        LL
Sbjct: 384 NVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALL 443

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +++  G  P + TY  L++GLCK G+L++A  + + +L  G      TY ++++G C H
Sbjct: 444 IKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSH 503

Query: 429 GNPEDFDKLQSEKGLVSDYAC 449
           G    FD+  S    + D +C
Sbjct: 504 G---LFDEALSLLSKMKDNSC 521



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 188/386 (48%), Gaps = 6/386 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   L   G HL  +    L+     +G    A++  R +     ++    
Sbjct: 153 KGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVM 212

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID M +          Y E++    S ++  ++ L+   C  GK+KDA  +F++  
Sbjct: 213 YSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMT 272

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
              ++    +FN L++  CK   + E     ++M   G++PD+ TY++L++G C  N ++
Sbjct: 273 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVN 332

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ +L+ M  RG+T     +  +I+G CK   +D      +A K+  EM    + P+ I
Sbjct: 333 MAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVD------QAMKLFKEMHHKQIFPNVI 386

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+DG CK G +  AL++   M  RG + D + +++++   C+   V +A  +L ++
Sbjct: 387 TYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKL 446

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G++P+  TYT++ID  CK G  +    + +++   G+   V TY  ++ G C HG  
Sbjct: 447 KDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLF 506

Query: 397 KNANMLLDTMLDLGVVPDDITYNILL 422
             A  LL  M D   +PD ITY I++
Sbjct: 507 DEALSLLSKMKDNSCIPDAITYEIII 532



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 160/306 (52%), Gaps = 6/306 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G + ++     +P VY FN+L+   CKEG++K+A+       K+G+    V++N+L++
Sbjct: 264 AIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMD 323

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C    ++    + + M   G+   V +Y+ +ING CK   +D A  L  EM  + + P
Sbjct: 324 GYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFP 383

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N + + +LIDG CK+GRI  A       +++D M   G  PD ITY+ +LD  CK   ++
Sbjct: 384 NVITYNSLIDGLCKSGRISYA------LELIDLMHDRGQQPDIITYSSILDALCKNHLVD 437

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ +  ++  +GI  +   +T LI G C+GG++ +A  +  ++L  G      TYT++I
Sbjct: 438 KAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMI 497

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             FC +G       LL +M+ +  +P   TY  ++  L    +   A  LL  M+  G++
Sbjct: 498 QGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLL 557

Query: 413 PDDITY 418
              + Y
Sbjct: 558 YSFLEY 563



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 156/342 (45%), Gaps = 32/342 (9%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA  +F+   ++      + F  ++    K+K+      L   ME  G++P+   ++ 
Sbjct: 51  VVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNI 110

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------- 253
           LIN  C+   +  A  +L ++ + G  P+ +   T I G C  G+I  A           
Sbjct: 111 LINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALG 170

Query: 254 ------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
                             G+ + A +++  +    +  D + Y+ ++D  CK+ ++  A 
Sbjct: 171 FHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAF 230

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           D+  EM+ R I  + V ++ALISGFC  GK+ +A  +  +M    + PD  T+ +++D F
Sbjct: 231 DLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAF 290

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G  K     L  M   G  P + TYN+LM+G C   ++  A  +L+TM   GV    
Sbjct: 291 CKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATV 350

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            +YNI++ G CK    +   KL  E   K +  +   Y SL+
Sbjct: 351 RSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLI 392



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           SF+T    H     +D       ++  +   PD+  +  ++  L K         L  +M
Sbjct: 38  SFSTSTTFHNNNDVVDAVSLFNCLLRQNPTPPDM-EFGQILGSLVKSKHYHTVLSLFQKM 96

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             RG+ PN V F  LI+  C+ G I  A        ++ ++   G  PD IT    + GF
Sbjct: 97  EYRGIKPNFVNFNILINCFCQLGLIPFA------FSVLAKILKMGYEPDTITLNTFIKGF 150

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C +G +  AL+   +++  G  LD V++  LI+G C+ G+   A  +LR +    ++ D 
Sbjct: 151 CLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDV 210

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             Y+ +ID  CK+ +    F L  EM S      + TY+AL++G C  G+LK+A  L + 
Sbjct: 211 VMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNK 270

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           M    + PD  T+NIL++  CK G  ++      +  ++G+  D   Y SL+
Sbjct: 271 MTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLM 322



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 121/263 (46%), Gaps = 24/263 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + + +L    +   +++ D G  P++Y + +L+  LCK G+++DA+ +F++   +G
Sbjct: 426 ILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKG 485

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            + T  ++  +I G C     DE   L S M+ +   PD  TY  +I  L  ++  D AE
Sbjct: 486 YNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAE 545

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE--MCTNGLNPDKIT 277
            LL EM  RGL     +++ L     + G   ++     A  + ++   CT+        
Sbjct: 546 KLLREMITRGL-----LYSFL-----EYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWA 595

Query: 278 YTILLDGFC---------KEGDLESALDI---RKEMIKRGIELDNVAFTALISGFCRGGK 325
             +L   +C         ++ D+E    I     +  K+G  LD   +T +I GFC  G 
Sbjct: 596 KLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGL 655

Query: 326 VVEAERMLREMLKVGLKPDDATY 348
             E+  +L +M   G  PD  TY
Sbjct: 656 FDESLALLSKMEVNGCIPDAVTY 678


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 219/431 (50%), Gaps = 12/431 (2%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRK 87
           LL  ++  K   +  SL+ +IL+++ T  P L+  +++I  +  LG +  A      + K
Sbjct: 75  LLSTLIKLKRYNAVVSLY-TILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILK 133

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
             F+I  R    L+  +         +    E +D G+      +  +++ LCK GK +D
Sbjct: 134 MGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRD 193

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  +F +  K  ++   + +NT+I+G CK   +DE   L + M  +G+  DVY+Y+++I+
Sbjct: 194 AIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIH 253

Query: 208 GLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           G C   R   A  LL EM  RG + P+   F  LIDG CK GR+       EA  +V  M
Sbjct: 254 GFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVS------EAYNVVAVM 307

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G  PD ++Y  L++G+C  G +  A  +  +M++R    + +++  LI+G+C+   V
Sbjct: 308 IKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMV 367

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA  +L EM    L PD  TY  ++D   K+G +   + L++ MR+ G    + TYN L
Sbjct: 368 DEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVL 427

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---PEDFDKLQSEKGL 443
           ++   KH +   A  L   ++++G+ P+  TYNILL+G CK G     ++  +L S KG 
Sbjct: 428 LDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGC 487

Query: 444 VSDYACYTSLV 454
             +   Y  ++
Sbjct: 488 QPNIRTYNIMI 498



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 216/446 (48%), Gaps = 31/446 (6%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P  + +L  +S +++          A  LL  I+ K G      +  +++  +G  L G 
Sbjct: 99  PTIKPSLITFSILINAFAQLGQMGFAFSLLGNIL-KMGFQIDVRILTTLM--KGLCLKGR 155

Query: 61  VLDALMIV--YVDLGF-------------------LDDAIQCFRLLRKHYFRIPARGCRC 99
           VL+A+ ++  YVD GF                     DAIQ F  ++K            
Sbjct: 156 VLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNT 215

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +  L     G   E+++ G    VY +N ++H  C  G+ + A  + DE   RG
Sbjct: 216 VIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG 275

Query: 160 -LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            ++    +FN LI+G CK   + E + + +VM   G +PD+ +Y+AL+NG C    + +A
Sbjct: 276 KVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEA 335

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           + +  +M ER   PN + + TLI+G+CK   +D      EA  ++ EM    L PD +TY
Sbjct: 336 KQVFDKMVERTALPNVISYCTLINGYCKVRMVD------EAMVLLTEMHNKNLVPDTVTY 389

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             LLDG  K G      D+ + M   G   D + +  L+  + +  K  +A  + + +++
Sbjct: 390 NCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIE 449

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
           +G+ P+  TY +++D  CK+G  K    + + + + G  P + TYN +++GLCK G L  
Sbjct: 450 IGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDE 509

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEG 424
           A  LL  M++   +P+ IT++ ++  
Sbjct: 510 AEALLYKMVNNNYLPNYITFDTIVRA 535



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 140/264 (53%), Gaps = 6/264 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P VY FN+L+  LCK G++ +A  V     KRG     VS+N L+NG+C + ++ E  ++
Sbjct: 279 PDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQV 338

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M      P+V +Y  LING CK   +D+A +LL EM  + L P+ V +  L+DG  K
Sbjct: 339 FDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSK 398

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +GR     D+ EA      M  +G   D ITY +LLD + K    + AL + + +I+ GI
Sbjct: 399 SGRSLYEWDLVEA------MRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGI 452

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   +  L+ G C+ G++  A+ + + +   G +P+  TY ++I   CK G       
Sbjct: 453 SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEA 512

Query: 367 LLKEMRSDGHLPAVETYNALMNGL 390
           LL +M ++ +LP   T++ ++  +
Sbjct: 513 LLYKMVNNNYLPNYITFDTIVRAI 536



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  +  I++ G SP++  +N+L+  LCK G++K A+ +F     +G      ++N +I+G
Sbjct: 441 LALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHG 500

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            CK   LDE   L   M  +   P+  T+  ++  +
Sbjct: 501 LCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAI 536


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 193/371 (52%), Gaps = 24/371 (6%)

Query: 61  VLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           + DA+ +V   V++G+  D +    L+   +    A     LIDRM++            
Sbjct: 164 ISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQR----------- 212

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
                G  P +  +  +++ LCK G    A  + ++     + A  V ++T+I+  CK +
Sbjct: 213 -----GCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYR 267

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           + D+   L + ME  G+RP+V TYS+LI+ LC   R  DA  LL +M ER + PN V F+
Sbjct: 268 HEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFS 327

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID   K G+      + +A K+ +EM    ++P+  TY+ L++GFC    L  A  + 
Sbjct: 328 ALIDAFVKKGK------LVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQML 381

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + MI++    + V +  LI+GFC+  +V +   + REM + GL  +  TYT +I  F + 
Sbjct: 382 ELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQA 441

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            D      + K+M S G  P + TYN L++GLCK+G+L  A ++ + +    + PD  TY
Sbjct: 442 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 501

Query: 419 NILLEGHCKHG 429
           NI++EG CK G
Sbjct: 502 NIMIEGMCKAG 512



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 201/386 (52%), Gaps = 15/386 (3%)

Query: 75  LDDAIQCFRLL---RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           LDDAI  F ++   R     I        I +M + +L  ++ G  +EIL  G S ++Y 
Sbjct: 59  LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDL-VISFGEKMEIL--GISHNLYT 115

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+L++  C+  ++  A  +  +  K G     V+ N+L+NG C    + +   L   M 
Sbjct: 116 YNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV 175

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +PD  T++ LI+GL   N+  +A  L+  M +RG  P+ V +  +++G CK G  D
Sbjct: 176 EMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTD 235

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           +A ++      +++M    +  + + Y+ ++D  CK    + AL++  EM  +G+  + +
Sbjct: 236 LALNL------LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 289

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +++LIS  C  G+  +A R+L +M++  + P+  T++ +ID F K G      +L +EM
Sbjct: 290 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEM 349

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                 P + TY++L+NG C   +L  A  +L+ M+    +P+ +TYN L+ G CK    
Sbjct: 350 IKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRV 409

Query: 432 E---DFDKLQSEKGLVSDYACYTSLV 454
           +   +  +  S++GLV +   YT+L+
Sbjct: 410 DKGMELFREMSQRGLVGNTVTYTTLI 435



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 135/252 (53%), Gaps = 6/252 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+ + G  P+V  ++ L+  LC  G+  DA  +  +  +R ++   V+F+ LI+
Sbjct: 272 ALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALID 331

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
              K   L +  +L   M    + P+++TYS+LING C  +RL +A+ +L  M  +   P
Sbjct: 332 AFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLP 391

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + TLI+G CK  R+D      +  ++  EM   GL  + +TYT L+ GF +  D +
Sbjct: 392 NVVTYNTLINGFCKAKRVD------KGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 445

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           +A  + K+M+  G+  + + +  L+ G C+ GK+ +A  +   + +  ++PD  TY ++I
Sbjct: 446 NAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMI 505

Query: 353 DCFCKNGDTKTG 364
           +  CK G  K G
Sbjct: 506 EGMCKAGKWKMG 517



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 9/315 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++ DA  +F    +     + + F+ L++   K    D        ME  G+  ++YTY+
Sbjct: 58  ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYN 117

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LIN  C+ +RL  A  LL +M + G  P+ V   +L++G C   RI       +A  +V
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS------DAVALV 171

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D+M   G  PD +T+T L+ G         A+ +   M++RG + D V + A+++G C+ 
Sbjct: 172 DQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKR 231

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G    A  +L +M    ++ +   Y+ VID  CK         L  EM + G  P V TY
Sbjct: 232 GDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 291

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           ++L++ LC +G+  +A+ LL  M++  + P+ +T++ L++   K G     +KL  E   
Sbjct: 292 SSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIK 351

Query: 441 KGLVSDYACYTSLVS 455
           + +  +   Y+SL++
Sbjct: 352 RSIDPNIFTYSSLIN 366



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
           Y Y  ++     +  LDDA  L   M +    P+ + F+ L+    K  + D+     E 
Sbjct: 44  YDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEK 103

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            +I+      G++ +  TY IL++ FC+   L  AL +  +M+K G E D V   +L++G
Sbjct: 104 MEIL------GISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNG 157

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
           FC G ++ +A  ++ +M+++G KPD  T+T +I     +        L+  M   G  P 
Sbjct: 158 FCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPD 217

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           + TY A++NGLCK G    A  LL+ M    +  + + Y+ +++  CK+ + +D   L +
Sbjct: 218 LVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFT 277

Query: 440 E---KGLVSDYACYTSLVS 455
           E   KG+  +   Y+SL+S
Sbjct: 278 EMENKGVRPNVITYSSLIS 296



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  +N L++  CK  ++     +F E  +RGL    V++ TLI+G  +A++ D    +
Sbjct: 391 PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 450

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+ P++ TY+ L++GLCK  +L  A ++   +    + P+   +  +I+G CK
Sbjct: 451 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510

Query: 247 NGRIDMAG 254
            G+  M G
Sbjct: 511 AGKWKMGG 518


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 207/397 (52%), Gaps = 14/397 (3%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEI 120
           L  L+I    +   D+A+  F  LR+    +PA   C  ++D +++ ++       + E+
Sbjct: 109 LGVLVIALSQMALPDEALSVFGRLRE----LPALPACNAILDGLVKAHMLARVWELFDEM 164

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G  PSV  +N L++    +G +  A  V+D+   R +    V++ T+I   C+   +
Sbjct: 165 LGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCI 224

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            +   L   M+ +GMRP++YTY+AL++   K + +  A +  +++ + GL PNDVIFTTL
Sbjct: 225 GDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTL 284

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           IDG C+  RI       EA+ I  +M    + P    Y  L+ G  + G  + AL   +E
Sbjct: 285 IDGLCQANRI------TEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQE 338

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +I++G+  D    + ++ G C GG++  A R L  M + G+  + A Y ++ID +CK+G+
Sbjct: 339 IIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGN 398

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                     M   G  P V TY++L++G  K+G+++ A  +   M+  GV P+ +TY  
Sbjct: 399 LDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTA 458

Query: 421 LLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLV 454
           L+ GH K+G+ +    LQ    EKG+ S+    + LV
Sbjct: 459 LIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLV 495



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 160/320 (50%), Gaps = 12/320 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + + N  T     +L++  Y  +P+V V+N L+H   + G  ++A   F E  ++G
Sbjct: 284 LIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKG 343

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     + + ++ G C    +    R   VM+ SG+  +   Y+ LI+  CK   LD+A 
Sbjct: 344 LRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEAL 403

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           +    M E G+ PN V +++LIDGH KNG      +M+ A  I  EM   G+ P+ +TYT
Sbjct: 404 VTCTRMSEVGVEPNVVTYSSLIDGHSKNG------EMEIAMAIYTEMVAKGVEPNVVTYT 457

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE---M 336
            L+ G  K GD+++A  ++KEM ++GI  + +  + L+ G CR  +V +A R + E    
Sbjct: 458 ALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQ 517

Query: 337 LKVGLKPDDA---TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            K    P  A   TY  +I     +G           MR  G +P   TY  ++ GLC  
Sbjct: 518 KKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCML 577

Query: 394 GQLKNANMLLDTMLDLGVVP 413
           G + NA ML   M+ +GV P
Sbjct: 578 GYVLNAMMLYADMVKVGVKP 597



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 161/323 (49%), Gaps = 12/323 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L FY ++L  G  P+  +F  L+  LC+  +I +A+ +F +  +  +  T   +N+LI+
Sbjct: 262 ALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIH 321

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  ++    E       +   G+RPD +T S ++ GLC   ++  A   L  M + G+  
Sbjct: 322 GAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIAL 381

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   +  LID +CK+G +D      EA      M   G+ P+ +TY+ L+DG  K G++E
Sbjct: 382 NAAAYNVLIDEYCKSGNLD------EALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEME 435

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ I  EM+ +G+E + V +TALI G  + G +  A  + +EM + G+  +  T ++++
Sbjct: 436 IAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLV 495

Query: 353 DCFCKNGDTKTGFRLLKE---MRSDGHLPAVE---TYNALMNGLCKHGQLKNANMLLDTM 406
           D  C+    +   R + E    +     P++    TY  L+ GL   GQ   A      M
Sbjct: 496 DGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCM 555

Query: 407 LDLGVVPDDITYNILLEGHCKHG 429
            D G+VPD  TY +++ G C  G
Sbjct: 556 RDSGMVPDRFTYTLVIRGLCMLG 578



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 12/243 (4%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           D G +  A +   ++++    + A     LID   ++      L     + + G  P+V 
Sbjct: 360 DGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVV 419

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            ++ L+    K G+++ A  ++ E   +G+    V++  LI+GH K  ++D  F L+  M
Sbjct: 420 TYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEM 479

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT------PNDVIFTTLIDGH 244
           E  G+  +  T S L++GLC+ENR+ DA   + E   +  +       N V + TLI G 
Sbjct: 480 EEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYG- 538

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                + + G   EA      M  +G+ PD+ TYT+++ G C  G + +A+ +  +M+K 
Sbjct: 539 -----LYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKV 593

Query: 305 GIE 307
           G++
Sbjct: 594 GVK 596


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 179/335 (53%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   S   +NVLM+ LC+  ++ +A  V +   +RG+ A  V++ TL+ G C+ + L+  
Sbjct: 225 GVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMA 284

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M      P V + S +++GL K   +D A  L   + E G+ PN      LID 
Sbjct: 285 LEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDK 344

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+ R       +EA ++   M   GL P+++TY IL+   CK G ++ AL +   M +
Sbjct: 345 LCKDRRF------REAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMRE 398

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +GI +    + +LI+G+C+     +A  +L EM++ GL P  A+Y+ +I   C+ GD  +
Sbjct: 399 KGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLAS 458

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L +EM  +G    V T+  L++G CK G +  A  L D M+D  VVP+++T+N+++E
Sbjct: 459 AMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIE 518

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G+C+ GN     +L  +   +GL  D   Y SL+S
Sbjct: 519 GYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLIS 553



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 196/439 (44%), Gaps = 78/439 (17%)

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
            C  LID++ +          +  + + G  P+   + +L+H LCK G + DA  +FD  
Sbjct: 337 ACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRM 396

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            ++G+  T   +N+LING+C+  N  +   L + M   G+ P   +YS LI GLC++  L
Sbjct: 397 REKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDL 456

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
             A  L  EM   G++ N   FTTLI G CK+G +D      EA ++ D+M  + + P++
Sbjct: 457 ASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMD------EAARLFDKMIDSSVVPNE 510

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS----------------- 318
           +T+ ++++G+C+ G++  A  +  +M+ RG+  DN  + +LIS                 
Sbjct: 511 VTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDD 570

Query: 319 ------------------GFCRGGKVVEAERM---------------------------- 332
                             GFC+ G++ E   +                            
Sbjct: 571 LENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHD 630

Query: 333 -------LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
                   REM + G+KPD+  +T +ID   K  +         +M +DG  P V TY  
Sbjct: 631 GEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTV 690

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--KGL 443
           L+N LCK G L +A +L + ML    +P+  TYN  L+     G  E    L +   +G 
Sbjct: 691 LINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGC 750

Query: 444 VSDYACYTSLVSKSSKYRQ 462
           +++   + +L+    K  Q
Sbjct: 751 LANTVTFNTLIKGFCKAGQ 769



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 206/503 (40%), Gaps = 132/503 (26%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           R+T++ Y+++++    H    QAR LL+ +V +KG+  SA+ ++ +       + GL   
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMV-EKGLAPSAASYSPL-------IAGLCRK 453

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
                    G L  A++  R                                   E+   
Sbjct: 454 ---------GDLASAMELHR-----------------------------------EMARN 469

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G S +VY F  L+   CK+G + +A  +FD+     +    V+FN +I G+C+  N+ + 
Sbjct: 470 GVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKA 529

Query: 184 FRLKSVMEGSGMRPDVYTYSALIN-----------------------------------G 208
           F+L   M   G+ PD YTY +LI+                                   G
Sbjct: 530 FQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYG 589

Query: 209 LCKENRLDD-------------------------AELLLH----------EMCERGLTPN 233
            CKE RL +                         A L LH          EM E+G+ P+
Sbjct: 590 FCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPD 649

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           +V  T +ID H K   I       +A    D+M  +G +P+ +TYT+L++  CK G L S
Sbjct: 650 NVFHTCMIDVHSKEENI------VQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSS 703

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  + +EM+      ++  +   +      G++ E  ++L   +  G   +  T+  +I 
Sbjct: 704 AQILCEEMLVGRFLPNSFTYNCFLDFLANEGEL-EKAKVLHATILEGCLANTVTFNTLIK 762

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            FCK G  +    L++     G  P   +Y+ ++N LCK G +  A  L + ML  G+ P
Sbjct: 763 GFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKP 822

Query: 414 DDITYNILLEGHCKHGNPEDFDK 436
           D + YNIL+     HG   +FDK
Sbjct: 823 DIVAYNILIRWCNIHG---EFDK 842



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 133/268 (49%), Gaps = 11/268 (4%)

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            SG+    YT S ++  L K  +   A  L  EM +     ++ ++T  I  +C+   +D
Sbjct: 153 SSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLD 212

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                  AR ++  M + G+    + Y +L+ G C+   +  A++++  M++RGI  D V
Sbjct: 213 ------GARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEV 266

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  L+ GFCR  ++  A  M  +ML +   P  A+ + ++D   K G     FRL   +
Sbjct: 267 TYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHL 326

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G +P +   NAL++ LCK  + + A  L   M + G+ P+++TY IL+   CK G  
Sbjct: 327 GELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMM 386

Query: 432 ED----FDKLQSEKGLVSDYACYTSLVS 455
           +D    FD+++ EKG+      Y SL++
Sbjct: 387 DDALCMFDRMR-EKGIRVTVYPYNSLIN 413



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+ID   +       L  + +++  G SP+V  + VL++ LCK G +  AQ++ +E    
Sbjct: 655 CMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVG 714

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
                + ++N  ++       L++   L  +++EG     +  T++ LI G CK  ++  
Sbjct: 715 RFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGC--LANTVTFNTLIKGFCKAGQIQG 772

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  L+    E G  P+ + ++T+I+  CK       GD+ +A ++ +EM   GL PD + 
Sbjct: 773 AIDLMQNNTESGFFPDCISYSTIINELCK------VGDINKAFQLWNEMLYKGLKPDIVA 826

Query: 278 YTILLDGFCKEGDLESALDIRKEMI 302
           Y IL+      G+ +  L I  +M+
Sbjct: 827 YNILIRWCNIHGEFDKGLGIYSDMV 851


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 11/339 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++P V  ++ L++ L + GK + A  V  E   +G      ++NTL++   KA   DE  
Sbjct: 40  WTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEAL 99

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           RL + M  +G  PDV TY+ LI+ L K  RL +A  L  EM ERG  P+   + +LI G 
Sbjct: 100 RLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGL 159

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K GR       ++A ++++EM  +G  PD +TY+ L+ G  K+G+   A  + +EM +R
Sbjct: 160 GKVGR------SQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRR 213

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G + D++ FTAL+    + G+V +A  +L EM + G+KP   TY  +I  F K GD    
Sbjct: 214 GRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEA 273

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + LL EM+ +G  P V TY+ L+ GL K  QL  A  +L  M   G  PD ITYN L+ G
Sbjct: 274 YNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLING 333

Query: 425 HCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
             K G   D    FD+++S KG   D   Y++L++   K
Sbjct: 334 LGKAGLLNDAGRLFDRMKS-KGCNPDVVTYSTLITALGK 371



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 196/393 (49%), Gaps = 9/393 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G  D+A++    +R +      R   CLI  + +    +     + E+ + G  P  + +
Sbjct: 93  GQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTY 152

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L++ L K G+ + A  + +E  + G     +++++LI G  K     + F+L   M+ 
Sbjct: 153 NSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKR 212

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G +PD  T++AL++ L K  R+DDA  LL EM ERG+ P  V +  LI G  K      
Sbjct: 213 RGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGK------ 266

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            GD+ EA  ++DEM  NG  PD +TY+ L+ G  K   L+ A  + K+M K G   D + 
Sbjct: 267 VGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTIT 326

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  LI+G  + G + +A R+   M   G  PD  TY+ +I    K    ++   L +EM 
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME 386

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G  P + TY +++  L K GQ+ +A+ L   M   G+ PD ITYN  L    + G  +
Sbjct: 387 SVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFK 446

Query: 433 DFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
           +  K+     E GL+ D A Y +L+   SK ++
Sbjct: 447 EARKIFEDMKESGLLPDVATYDALLLGLSKTKE 479



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 196/387 (50%), Gaps = 19/387 (4%)

Query: 91  RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
            + A+GC+        L+D + +       L    E+ D G  P V  +N L+  L K G
Sbjct: 69  EMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAG 128

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++ +A  +F E  +RG      ++N+LI G  K     +   L   ME  G  PDV TYS
Sbjct: 129 RLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYS 188

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           +LI GL K+     A  L  EM  RG  P+ + FT L+D   K GR+D      +A +++
Sbjct: 189 SLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVD------DALELL 242

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           DEM   G+ P  +TY  L+ GF K GDL  A ++  EM + G + D V ++ LI+G  + 
Sbjct: 243 DEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKA 302

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            ++ EA ++L++M K G  PD  TY  +I+   K G      RL   M+S G  P V TY
Sbjct: 303 SQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTY 362

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           + L+  L K  ++++A +L + M  +G+ PD  TY  ++    K G  +D D+L SE   
Sbjct: 363 STLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRG 422

Query: 441 KGLVSDYACYTSLVS---KSSKYRQKR 464
           KGL  D   Y + ++   +  ++++ R
Sbjct: 423 KGLSPDVITYNAFLNSLGRGGRFKEAR 449



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 203/415 (48%), Gaps = 12/415 (2%)

Query: 53  RGTHLPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           +G   P +V  ++L+      G  ++A   F  L+   +        CLI+ + R     
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             L    E+   G  P+++ +N L+  L K G+  +A  +  E    G      ++N LI
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +   KA  L E F L + M   G  PD +TY++LI GL K  R   A  LL EM   G  
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCP 181

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ + +++LI G  K+      G+  +A K+  EM   G  PD IT+T L+D   K G +
Sbjct: 182 PDVMTYSSLITGLGKD------GETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRV 235

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + AL++  EM +RG++   V + ALI+GF + G +VEA  +L EM + G KPD  TY+ +
Sbjct: 236 DDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCL 295

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I    K        ++LK+M  +G  P   TYN L+NGL K G L +A  L D M   G 
Sbjct: 296 ITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGC 355

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            PD +TY+ L+    K    E     F++++S  G+  D   Y S+++   K  Q
Sbjct: 356 NPDVVTYSTLITALGKAARVESACVLFEEMES-VGIQPDLFTYCSIITVLGKAGQ 409



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 214/430 (49%), Gaps = 11/430 (2%)

Query: 34  VSKKGMGSSA-SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           + K G  S A +LFA + E RG        ++L+     +G    A++    + +H    
Sbjct: 124 LGKAGRLSEAFTLFAEMRE-RGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPP 182

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
                  LI  + +          + E+   G  P    F  LM  L K G++ DA  + 
Sbjct: 183 DVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELL 242

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           DE  +RG+    V++N LI G  K  +L E + L   M+ +G +PDV TYS LI GL K 
Sbjct: 243 DEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKA 302

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
           ++LD+A  +L +M + G  P+ + + TLI+G  K G ++ AG      ++ D M + G N
Sbjct: 303 SQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAG------RLFDRMKSKGCN 356

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD +TY+ L+    K   +ESA  + +EM   GI+ D   + ++I+   + G+V +A+R+
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             EM   GL PD  TY   ++   + G  K   ++ ++M+  G LP V TY+AL+ GL K
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYAC 449
             ++ +A  LL  +++ G   D + ++  LE     GN ++  +L    + KGL    + 
Sbjct: 477 TKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASS 536

Query: 450 YTSLVSKSSK 459
           Y +L+   +K
Sbjct: 537 YNALIDALAK 546



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 189/374 (50%), Gaps = 8/374 (2%)

Query: 50  LETRGTHLPGLVL-DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           ++ RG   PG+V  +AL+  +  +G L +A      ++++  +       CLI  +++ +
Sbjct: 245 MKERGVK-PGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKAS 303

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
                     ++   G  P    +N L++ L K G + DA  +FD    +G +   V+++
Sbjct: 304 QLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYS 363

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           TLI    KA  ++    L   ME  G++PD++TY ++I  L K  ++DDA+ L  EM  +
Sbjct: 364 TLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGK 423

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL+P+ + +   ++   + GR       KEARKI ++M  +GL PD  TY  LL G  K 
Sbjct: 424 GLSPDVITYNAFLNSLGRGGRF------KEARKIFEDMKESGLLPDVATYDALLLGLSKT 477

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
            +++ A  + KE+I++G   D++ F   +      G V EA  +L+     GL P  ++Y
Sbjct: 478 KEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSY 537

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +ID   K G     F  L++++  G  P + +Y++L++ L + GQ+  A  LL+ M  
Sbjct: 538 NALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSK 597

Query: 409 LGVVPDDITYNILL 422
            G+     +Y+ L+
Sbjct: 598 RGLKLSPRSYSNLV 611



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 2/145 (1%)

Query: 28  DLLHLIVSK-KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86
           D L L +SK K +  +  L   ++E +G     L  D  + +    G +D+A +  +   
Sbjct: 468 DALLLGLSKTKEVDDACGLLKELIE-QGCAFDSLKFDECLEILTSWGNVDEAHELLQFAN 526

Query: 87  KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
                  A     LID + +    +       ++ + G  P +  ++ L+  L + G+I 
Sbjct: 527 SKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQID 586

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLI 171
            A  + +E  KRGL  +  S++ L+
Sbjct: 587 TAFELLEEMSKRGLKLSPRSYSNLV 611


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 182/344 (52%), Gaps = 10/344 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   +++D G  P    FN L+  LC + ++++A  +  E   +GL     +FN LIN  
Sbjct: 356 GIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 415

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK  +   G RL   M+ SG  PD  TY+ LI+ LC   +L +A  LL EM   G   + 
Sbjct: 416 CKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRST 475

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + T+ID  CK  RI+      EA ++ D+M  +G++   +T+  L+DG CK   ++ A
Sbjct: 476 VTYNTIIDALCKQMRIE------EAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDA 529

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            ++ ++M+K G++  N+ + ++++ +C+ G + +A  +L  M   G + D  TY  +I+ 
Sbjct: 530 TELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLING 589

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK G T+   +LL+ MR  G  P  + YN ++  L +   L++A  L   M ++G  PD
Sbjct: 590 LCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPD 649

Query: 415 DITYNILLEGHCKHGNP--EDFDKLQS--EKGLVSDYACYTSLV 454
            +TY I+  G C+ G P  E FD L     KG + +++ +  L 
Sbjct: 650 ALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLA 693



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 212/461 (45%), Gaps = 37/461 (8%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--RGTHLPGL-VLDALMIVY 69
           M++  +A +  + +R +   I+ K G   +  L   ++    R  H  G  V+ + +  Y
Sbjct: 75  MLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESY 134

Query: 70  VDLGFLDDAIQCFR------------LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
             L   DDA+   R             +  H   + A G R  +       L +V    Y
Sbjct: 135 ARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKL-------LESV----Y 183

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+ D G  P V   N L+  LC+  +++ A ++ +E     +     +F TL+ G  + 
Sbjct: 184 NEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEE 243

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            +++   R+K+ M  +G  P   T + LING CK  R++DA   + +    G  P+ V +
Sbjct: 244 GSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTY 303

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            T +   C+NG +        A K++D M   G +PD  TY  +++   K G+L+ A  I
Sbjct: 304 NTFVHCLCQNGHV------SHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 357

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +M+ RG   D   F  LI   C   ++ EA  + RE+   GL PD  T+ ++I+  CK
Sbjct: 358 VNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 417

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            GD   G RL +EM+S G  P   TYN L++ LC  G+L NA  LL  M   G     +T
Sbjct: 418 VGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVT 477

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           YN +++  CK    E+    FD++ +  G+      + +L+
Sbjct: 478 YNTIIDALCKQMRIEEAEEVFDQMDAH-GISRSAVTFNTLI 517



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 177/339 (52%), Gaps = 10/339 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++PS  V+  ++ KL   G     + +  E  + G  A A    + +  + + +  D+  
Sbjct: 85  FAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAV 144

Query: 185 RL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            L ++ +   G++ D   Y+ L+N L + +R+   E + +EM +RG+ P+ V   TLI  
Sbjct: 145 DLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKA 204

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+      A  ++ A  +++EM ++ + PD+ T+T L+ GF +EG +E+AL ++ +M++
Sbjct: 205 LCR------AHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMME 258

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G     V    LI+G+C+ G+V +A   +++ +  G +PD  TY   + C C+NG    
Sbjct: 259 TGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSH 318

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +++  M  +GH P V TYN ++N L K+G+L  A  +++ M+D G +PD  T+N L+ 
Sbjct: 319 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 378

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
             C     E+   L  E   KGL  D   +  L++   K
Sbjct: 379 ALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 417



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 185/404 (45%), Gaps = 25/404 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIV------------------SKKGMGSSASLFASILE 51
           Y+T VH L  +   S A  ++ L++                  SK G    A    + + 
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 362

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
            RG        + L++       L++A+   R L              LI+ + +   P 
Sbjct: 363 DRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPH 422

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + +  + E+   G +P    +N+L+  LC  GK+ +A  +  E    G   + V++NT+I
Sbjct: 423 LGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTII 482

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +  CK   ++E   +   M+  G+     T++ LI+GLCK  R+DDA  L+ +M + GL 
Sbjct: 483 DALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 542

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+++ + +++  +CK       GD+K+A  I++ M  NG   D +TY  L++G CK G  
Sbjct: 543 PSNITYNSILTHYCKQ------GDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 596

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + AL + + M  +GI     A+  +I    R   + +A  + REM +VG  PD  TY +V
Sbjct: 597 QVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIV 656

Query: 352 IDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
               C+  G  K  F  L EM + G +P   ++  L  GL   G
Sbjct: 657 FRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 700


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 210/438 (47%), Gaps = 44/438 (10%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  + LM  ++  G +D+A++   +++KH           L+D + +       +    E
Sbjct: 529 ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G  PSV  ++ LM    K  + +++  +FDE  ++G  A   +++ +IN  CK+ +
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +D+   +   M+  GM P +  Y  L++ L K+ ++D A  + +E+ E  L P+  ++  
Sbjct: 649 VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +++G  K+ R+D      EA K+VD M    + PD  TYT LLDG  K G LE A ++  
Sbjct: 709 MVNGLVKSNRVD------EACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFT 762

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-------------------- 339
           +M + G E D VA+T+L+    +GGK+  A  + R M K                     
Sbjct: 763 KMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEG 822

Query: 340 ---------------GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
                          G  P+   Y+ +ID F K G       L +EM+     P + TYN
Sbjct: 823 RVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYN 882

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEK 441
            L++GL K G+L  A  LL+ M  +G VPD +TYNIL++G  K G     E + K   EK
Sbjct: 883 NLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEK 942

Query: 442 GLVSDYACYTSLVSKSSK 459
           G+V D   +TSL+    K
Sbjct: 943 GIVPDVITFTSLIESLGK 960



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 178/349 (51%), Gaps = 6/349 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D A+  F  +++          + L+  +++       L  + E+ +    P  +V+N+
Sbjct: 649 VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           +++ L K  ++ +A  + D    + +     ++ +L++G  K+  L+E F + + M   G
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV  Y++L++ L K  +L  A ++   M ++   P+ V +++LID   K GR++   
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE--- 825

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA    +   + G  P+   Y+ L+D F K+G ++ AL++ +EM +R    + V + 
Sbjct: 826 ---EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYN 882

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L+SG  + G++  AE++L EM KVG  PD  TY ++ID   K G         K M+  
Sbjct: 883 NLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEK 942

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           G +P V T+ +L+  L K  +L  A  L D+M + G  P  +TYN+L++
Sbjct: 943 GIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLID 991



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 200/435 (45%), Gaps = 44/435 (10%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           G H   +++DAL    V  G +D+A + F  ++             L++ + +       
Sbjct: 321 GVHTFTVLIDAL----VKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEA 376

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
              ++E+ +   SP    +N L+  L K G+   A  +F E   RGL     ++N +I+ 
Sbjct: 377 CEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISV 436

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG---- 229
             KA    E ++L   ++  G  PDV+TY+ LI+ L K  ++D    ++ EM E+G    
Sbjct: 437 LGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECI 496

Query: 230 ---------------------------LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
                                       +  ++ + TL+     NG +D      EA K+
Sbjct: 497 ISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVD------EAVKL 550

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
           ++ M  +   P  +TYT L+DG  K G L+ A+ + +EM K+G E   V +++L++ F +
Sbjct: 551 LEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYK 610

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
             +  E+  +  EM++ G   D +TY++VI+C CK+ D      +   M+ +G  P +  
Sbjct: 611 RDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGN 670

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QS 439
           Y  L++ L K  ++  A  + + + +  +VPD   YNI++ G  K    ++  KL     
Sbjct: 671 YKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMK 730

Query: 440 EKGLVSDYACYTSLV 454
            + ++ D   YTSL+
Sbjct: 731 NQNILPDLFTYTSLL 745



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 186/423 (43%), Gaps = 40/423 (9%)

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
           D  +Q    + K   RI       L+     TN  +  L  + ++  +G +PS  ++N +
Sbjct: 199 DAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFV 258

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           +  L K G    A +VF + G+  +   A +F   ++   ++  LD        M  SG+
Sbjct: 259 LELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGI 318

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            P V+T++ LI+ L K   +D+A    + M     +PN V +TTL++G  K GR++    
Sbjct: 319 DPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLE---- 374

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
             EA ++  EM  N  +PD I Y  L+DG  K G+ + A  + KEM  RG+  +   +  
Sbjct: 375 --EACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNI 432

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM---- 371
           +IS   + G+  EA ++  ++ + G  PD  TY  +ID   K G       ++KEM    
Sbjct: 433 MISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492

Query: 372 --------RSDGHLPAVE-------------------TYNALMNGLCKHGQLKNANMLLD 404
                    + GH   +E                   TYN LM+    +G +  A  LL+
Sbjct: 493 GECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLE 552

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYR 461
            M     +P  +TY  L++G  K G  ++   L  E   +G       Y+SL++   K  
Sbjct: 553 VMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRD 612

Query: 462 QKR 464
           Q+ 
Sbjct: 613 QEE 615



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 136/307 (44%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GYS +V  + +++ +L    +      +     K G   +     +L+       N+   
Sbjct: 177 GYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGA 236

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M+  G  P    Y+ ++  L K      A ++  ++ +  + P+   F   +  
Sbjct: 237 LEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHS 296

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             ++GR+D A +       + EM  +G++P   T+T+L+D   K G+++ A      M  
Sbjct: 297 FNRSGRLDPAAEP------IQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKN 350

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                + V +T L++G  + G++ EA  +  EM +    PD   Y  +ID   K G+   
Sbjct: 351 LRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADM 410

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L KEM+  G +P + TYN +++ L K G+   A  L   + + G VPD  TYN L++
Sbjct: 411 ACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLID 470

Query: 424 GHCKHGN 430
              K G 
Sbjct: 471 VLGKGGQ 477



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 121/265 (45%), Gaps = 9/265 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G    V TY+ +I  L      D    +L  M + G   +  + T+L+            
Sbjct: 177 GYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLR------TFGST 230

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            ++  A +I ++M + G NP    Y  +L+   K G   SA+ +  ++ +  I+ D   F
Sbjct: 231 NNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTF 290

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
              +  F R G++  A   ++EM+K G+ P   T+T++ID   K+G+     +    M++
Sbjct: 291 RIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKN 350

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE- 432
               P V TY  L+NGL K G+L+ A  +   M +    PD I YN L++G  K G  + 
Sbjct: 351 LRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADM 410

Query: 433 --DFDKLQSEKGLVSDYACYTSLVS 455
                K   ++GLV +   Y  ++S
Sbjct: 411 ACGLFKEMKDRGLVPNLRTYNIMIS 435


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 168/337 (49%), Gaps = 42/337 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLD- 181
           G +P+ Y +  ++   CK G++ +A  VFDE   +G +   AV +N LI G+C    LD 
Sbjct: 545 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 604

Query: 182 ----------------------------------EGFRLKSVMEGSGMRPDVYTYSALIN 207
                                             E + L   M G G+ PDV+TY+ LIN
Sbjct: 605 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILIN 664

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G CKE  +  A  +   M  RG+    V +T LI    K G++      +E  K+ DE  
Sbjct: 665 GHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQV------QETDKLFDEAV 718

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G+ PD + Y  L++     G+++ A +I  EM K+ I  D+V +  L+ G C  G+V 
Sbjct: 719 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 778

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA +++ EM + G++PD  TY  +I  +   GD K   R+  EM + G  P + TYNAL+
Sbjct: 779 EARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALI 838

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            GLCK+GQ  +A  ++  M++ G+ PDD TY  L+EG
Sbjct: 839 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 875



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 26/383 (6%)

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGF---------------YLEILDYGYSPSVYVFNVLM 136
           +P+     L   M R  LP  T  F                LE+L     P+   +N ++
Sbjct: 462 LPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 521

Query: 137 HKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG- 194
              C  G+++ A  +  E  +RG +     ++ T+I+G CK   +DE  ++   M   G 
Sbjct: 522 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 581

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           ++P+   Y+ALI G C + +LD A L    M ERG+      +  L+     +GR     
Sbjct: 582 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR----- 636

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA ++V+EM   GL PD  TY IL++G CKEG+++ AL+I + M +RG+    V +T
Sbjct: 637 -GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 695

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI    + G+V E +++  E ++ G++PD   Y  +I+    +G+    F ++ EM   
Sbjct: 696 ALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 755

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              P   TYN LM GLC  G++  A  L+D M + G+ PD +TYN L+ G+   G+ +D 
Sbjct: 756 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDA 815

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
            ++++E   KG       Y +L+
Sbjct: 816 LRIRNEMMNKGFNPTLLTYNALI 838



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 165/323 (51%), Gaps = 7/323 (2%)

Query: 69  YVDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +  +G +D+A++ F  +L K   +  A     LI            L +   +++ G + 
Sbjct: 560 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 619

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+L+H L  +G+  +A  + +E G +GL     ++N LINGHCK  N+ +   + 
Sbjct: 620 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 679

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+R  V TY+ALI  L K+ ++ + + L  E   RG+ P+ V++  LI+ H  +
Sbjct: 680 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 739

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G ID       A +I+ EM    + PD +TY  L+ G C  G ++ A  +  EM +RGI+
Sbjct: 740 GNID------RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 793

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V +  LISG+   G V +A R+  EM+  G  P   TY  +I   CKNG       +
Sbjct: 794 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 853

Query: 368 LKEMRSDGHLPAVETYNALMNGL 390
           +KEM  +G  P   TY +L+ GL
Sbjct: 854 VKEMVENGITPDDSTYISLIEGL 876



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 31/202 (15%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   +V  +  L++ L K+G++++   +FDE  +RG+    V +N LIN H  + N+D  
Sbjct: 686 GVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA 745

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F +   ME   + PD  TY+ L+ GLC   R+D+A  L+ EM ERG+ P+ V + TLI G
Sbjct: 746 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 805

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           +   G +  A                             G   +A  +V EM  NG+ PD
Sbjct: 806 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 865

Query: 275 KITYTILLDGFCKEGDLESALD 296
             TY  L++G   E   E A+D
Sbjct: 866 DSTYISLIEGLTTED--ERAID 885



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P +  +N L+     +G +KDA  + +E   +G + T +++N LI G CK  
Sbjct: 786 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 845

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR--LDDAEL 220
             D+   +   M  +G+ PD  TY +LI GL  E+   +DD  L
Sbjct: 846 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 889


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 169/306 (55%), Gaps = 10/306 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + FN L+   C+  +++ A  +F +   RG    AVS+  LI G C+A  +DE 
Sbjct: 159 GWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEA 218

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M     +PD+YT++AL+ GLC   R ++   +L +M E G  P    +  L+D 
Sbjct: 219 LELFREM----TQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDL 274

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+  + +      EA KI++EM  +GL P  +T TI+++ +C+EG +  A+ + + M  
Sbjct: 275 WCREQKAE------EAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRF 328

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G E +   + A++ GFC  GKV +A  +L +M + G++PD  TY ++I   C +G   +
Sbjct: 329 KGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGS 388

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            FRLL+ M  +G      TYN L++ LCK G++  A  L D +   G+ P+ +T+N ++ 
Sbjct: 389 AFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVIN 448

Query: 424 GHCKHG 429
           G CK G
Sbjct: 449 GLCKAG 454



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 154/295 (52%), Gaps = 13/295 (4%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           T  ++N LI   C+  +L    R  S+M  SG RPD +T+++LI G C+  +L+ A  L 
Sbjct: 128 TGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLF 187

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M  RG + + V +  LI+G C+ GRID      EA ++  EM      PD  T+  L+
Sbjct: 188 CKMPFRGFSQDAVSYAALIEGFCEAGRID------EALELFREMT----QPDMYTHAALV 237

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G C  G  E  L + ++M + G      A+ AL+  +CR  K  EAE++L EM   GL 
Sbjct: 238 KGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLM 297

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P   T T+V++ +C+ G      R+ + MR  G  P V TYNA++ G C  G++  A  L
Sbjct: 298 PCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMAL 357

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKH---GNPEDFDKLQSEKGLVSDYACYTSLV 454
           LD M + GV PD +TYN+L+ G C     G+     +L    GL +D   Y  L+
Sbjct: 358 LDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLI 412



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 185/405 (45%), Gaps = 13/405 (3%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           RG     +   AL+  + + G +D+A++ FR + +      A   + L D          
Sbjct: 193 RGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCD----AGRGEE 248

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L    ++ + G+ P+   +  L+   C+E K ++A+ + +E    GL    V+   ++N
Sbjct: 249 GLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVN 308

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
            +C+   +    R+   M   G  P+V+TY+A++ G C   ++  A  LL +M E G+ P
Sbjct: 309 AYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEP 368

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +  LI G C +G I        A +++  M  NGL  D+ TY +L+D  CK G ++
Sbjct: 369 DVVTYNLLIRGQCIDGHIG------SAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVD 422

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +   +  RGI  ++V F  +I+G C+ GK   A   L  M+  G  PD  TY+  I
Sbjct: 423 EACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFI 482

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  CK   ++ G   + EM      P+   Y  ++N L        A  +   M+  G  
Sbjct: 483 ENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCS 542

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEKG---LVSDYACYTSLV 454
           PD +TY   +  +C  G  ++ + + +E      + D   Y +L+
Sbjct: 543 PDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLI 587



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 165/405 (40%), Gaps = 22/405 (5%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           SA     ++E  G        + L+      G +D+A   F  L     R  +     +I
Sbjct: 388 SAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVI 447

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           + + +     V   F   ++  GY+P  Y ++  +  LCK    ++     DE  ++ + 
Sbjct: 448 NGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVK 507

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            + V++  +IN     +N     R+   M   G  PDV TY+  +   C E RLD+AE +
Sbjct: 508 PSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENV 567

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           + EM +     + + + TLIDGH   G+ D       A  I+  M      P+  T+ IL
Sbjct: 568 VTEMKKCRTIVDAMAYNTLIDGHTSIGQTD------RAVTILKHMTGVASMPNHFTFFIL 621

Query: 282 L----------------DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           L                    K  +L    ++ + M K  +      + +++ GF    +
Sbjct: 622 LRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERR 681

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + E   ++  M +  L  ++  Y  +++CFCK       + LL  M   G LP +  Y  
Sbjct: 682 LDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQY 741

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           L++GL   GQ   A  +  +        D+I + ++++G  + G+
Sbjct: 742 LLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGH 786



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 120/305 (39%), Gaps = 57/305 (18%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+R+       +    + +++  G SP V  +   +   C EG++ +A+ V  E  K  
Sbjct: 516 VINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCR 575

Query: 160 LHATAVSFNTLINGH--------------------------------------------- 174
               A+++NTLI+GH                                             
Sbjct: 576 TIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVP 635

Query: 175 ------CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
                  K   L + F L  +M+ + +     TY +++ G  +E RLD+   L+  M E 
Sbjct: 636 LKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEE 695

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
            L  N+ I+  L++  CK   + M  D   A  ++  M  +G  P+ I Y  LL G   E
Sbjct: 696 NLPLNEDIYNALVNCFCK---LRMYSD---AWALLCSMIGHGFLPNLIFYQYLLSGLTAE 749

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G  + A +I +    +    D + +  +I GF R G       M+  + ++  KP D TY
Sbjct: 750 GQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETY 809

Query: 349 TMVID 353
            M+ +
Sbjct: 810 AMLTE 814



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 313 FTALISGFCRGGKVVEAERMLREMLK-VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           F +L++ F R        R+   M +     P  ATY  +I   C+  D +   R L  M
Sbjct: 96  FRSLLTHFSRYALTPLMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLM 155

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
              G  P   T+N+L+ G C+  QL+ A+ L   M   G   D ++Y  L+EG C+ G
Sbjct: 156 VRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAG 213


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 176/327 (53%), Gaps = 8/327 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F L ++ +   P+   +  LM  LC E +   A  +  +    G+    V++ TLI G C
Sbjct: 100 FLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLC 159

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            A ++D+   L   M  SG+ P+V  YS L+ G CK  R +    +  EM  RG+ P+ V
Sbjct: 160 DAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVV 219

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           ++T LID  C+ G++      K+A +++D+M   GL P+ +TY +L++  CKEG ++ A+
Sbjct: 220 MYTGLIDSLCREGKV------KKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAM 273

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML--KVGLKPDDATYTMVID 353
            +R  M+++G+ LD V +  LI+G     ++ EA  +L EM+  +  ++P+  T+  VI 
Sbjct: 274 SLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIH 333

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G  +  F++   M  +G    + T+N L+ GL +  ++K A  L+D M   G+ P
Sbjct: 334 GLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEP 393

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE 440
           D  TY+IL+ G CK    +  + L S+
Sbjct: 394 DSFTYSILINGFCKMWQVDRAESLLSK 420



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 218/505 (43%), Gaps = 84/505 (16%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           R T  +Y+T++  L A +   QA  LL  +         AS     + T GT + GL   
Sbjct: 110 RPTAVSYTTLMRALCAERRTGQAVGLLRDM--------QASGVRPDVVTYGTLIRGLC-- 159

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
                  D   +D A++  R + +           CL+    +          + E+   
Sbjct: 160 -------DAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGR 212

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V ++  L+  LC+EGK+K A  V D+  +RGL    V++N LIN  CK  ++ E 
Sbjct: 213 GIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEA 272

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC--ERGLTPNDVIFTTLI 241
             L++ M   G+  D  TY+ LI GL     +D+A  LL EM   E  + PN V F ++I
Sbjct: 273 MSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVI 332

Query: 242 DGHCKNGRI-------DMAGD----------------------MKEARKIVDEMCTNGLN 272
            G CK GR+       DM  +                      +K+A +++DEM ++GL 
Sbjct: 333 HGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLE 392

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE------------------------- 307
           PD  TY+IL++GFCK   ++ A  +  +M + GIE                         
Sbjct: 393 PDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNF 452

Query: 308 ---------LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
                    LD VA++ +I G CR      AE  L+ ML  GL PD  TY+M+I+ F  +
Sbjct: 453 FDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANS 512

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD     R+LK+M + G +P V  +++L+ G    G  +    L+  M    +  D    
Sbjct: 513 GDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKII 572

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGL 443
           + +    C   N E    LQS  G 
Sbjct: 573 STIYT--CLVANNEGKALLQSVPGF 595



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 189/417 (45%), Gaps = 36/417 (8%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G LD A+   R++  H  R  A     L+  +         +G   ++   G  P V  +
Sbjct: 93  GCLDAALFLLRVM-AHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTY 151

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L+  LC    +  A  +  E  + G+    V ++ L+ G+CKA   +   ++   M G
Sbjct: 152 GTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSG 211

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PDV  Y+ LI+ LC+E ++  A  ++ +M ERGL PN V +  LI+  CK G +  
Sbjct: 212 RGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKE 271

Query: 253 AG-----------------------------DMKEARKIVDEMC--TNGLNPDKITYTIL 281
           A                              +M EA  +++EM      + P+ +T+  +
Sbjct: 272 AMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSV 331

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G CK G +  A  +R  M + G   + V F  LI G  R  KV +A  ++ EM   GL
Sbjct: 332 IHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGL 391

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           +PD  TY+++I+ FCK         LL +MR DG  P +  Y  L+  LC+ G ++ A  
Sbjct: 392 EPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARN 451

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCK---HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
             D M       D + Y+ ++ G C+     + E+F K   ++GL+ D   Y+ L++
Sbjct: 452 FFDEMHK-NCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLIN 507



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 156/295 (52%), Gaps = 13/295 (4%)

Query: 164 AVSFNTLINGHCKAKN-LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           AVS+NT++   C+    LD    L  VM     RP   +Y+ L+  LC E R   A  LL
Sbjct: 78  AVSYNTVLAALCRQGGCLDAALFLLRVM-AHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M   G+ P+ V + TLI G C       A D+ +A +++ EMC +G+ P+ + Y+ LL
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCD------AADVDKAVELLREMCESGIEPNVVVYSCLL 190

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G+CK G  E    + +EM  RGIE D V +T LI   CR GKV +A +++ +M++ GL+
Sbjct: 191 QGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLE 250

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  TY ++I+  CK G  K    L   M   G      TYN L+ GL    ++  A  L
Sbjct: 251 PNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGL 310

Query: 403 LDTML--DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           L+ M+  +  V P+ +T+N ++ G CK G      ++   + ++++  C  +LV+
Sbjct: 311 LEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQV---RDMMAENGCACNLVT 362



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           D  +Y+ ++  LC++    DA L L  +      P  V +TTL+   C   R        
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTG------ 130

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A  ++ +M  +G+ PD +TY  L+ G C   D++ A+++ +EM + GIE + V ++ L+
Sbjct: 131 QAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLL 190

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G+C+ G+     ++  EM   G++PD   YT +ID  C+ G  K   +++ +M   G  
Sbjct: 191 QGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLE 250

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           P V TYN L+N +CK G +K A  L + ML+ GV  D +TYN L+ G
Sbjct: 251 PNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITG 297



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V++  +++  CR G  ++A   L  ++    +P   +YT ++   C    T     LL
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           ++M++ G  P V TY  L+ GLC    +  A  LL  M + G+ P+ + Y+ LL+G+CK 
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKA 196

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G  E   K+  E   +G+  D   YT L+
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLI 225


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 175/341 (51%), Gaps = 9/341 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  PS++ +N +++ LCK+G+   A+ +  E    GL     ++NTL+   C+  N  
Sbjct: 29  DKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFS 88

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   +   M   G+ PD+ ++S+L+    +   LD A +   +M + GL P++VI+T L+
Sbjct: 89  EAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 148

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G+C+NG      +M EA KI DEM   G   D I Y  +L+G CKE  L  A  +  EM
Sbjct: 149 HGYCRNG------NMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEM 202

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++RG   D   FT LI G C+ G + +A  +   M +  +KPD   Y  +ID FCK G+ 
Sbjct: 203 VERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEM 262

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L   M S    P   TY  L+N  C  G +  A  L D M++ G+ P  +T N +
Sbjct: 263 EKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTV 322

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           ++G+C+ G+    D+       KG+  D+  Y +L++   +
Sbjct: 323 IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINDGKR 363



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 169/315 (53%), Gaps = 9/315 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N L+   C+EG +++A  + +    +GL  +  ++N +ING CK         +   M 
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEML 63

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ PD  TY+ L+   C+ +   +A+ +  EM  +G+ P+ V F++L+    +N  +D
Sbjct: 64  NIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLD 123

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A     +M   GL PD + YT+L+ G+C+ G++  AL IR EM+++G  LD +
Sbjct: 124 ------QALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVI 177

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           A+  +++G C+   + +A+++  EM++ G  PD  T+T +I   C++G+      L   M
Sbjct: 178 AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 237

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                 P +  YN L++G CK G+++ A+ L D M+   + P+ ITY IL+  +C  G+ 
Sbjct: 238 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 297

Query: 432 EDFDKLQS---EKGL 443
            +  +L     EKG+
Sbjct: 298 SEAFRLWDVMIEKGI 312



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 180/360 (50%), Gaps = 6/360 (1%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + L+  Y   G L++A +    +     +        +I+ + +        G  +E+L+
Sbjct: 5   NTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLN 64

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G SP    +N L+ + C+     +A+ +F E  ++G+    VSF++L+    + ++LD+
Sbjct: 65  IGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQ 124

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
                  M+  G+ PD   Y+ L++G C+   + +A  +  EM E+G   + + + T+++
Sbjct: 125 ALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN 184

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK         + +A K+ DEM   G  PD  T+T L+ G C++G++  AL +   M 
Sbjct: 185 GLCKEKM------LTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMT 238

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +R I+ D VA+  LI GFC+ G++ +A  +   M+   + P+  TY ++I+ +C  G   
Sbjct: 239 QRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVS 298

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             FRL   M   G  P + T N ++ G C+ G    A+  L  M+  GV PD I+YN L+
Sbjct: 299 EAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 143/270 (52%), Gaps = 6/270 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P +  F+ LM    +   +  A + F +  K GL    V +  L++G+C+  
Sbjct: 96  EMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNG 155

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E  +++  M   G   DV  Y+ ++NGLCKE  L DA+ L  EM ERG  P+   FT
Sbjct: 156 NMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFT 215

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI GHC++      G+M +A  +   M    + PD + Y  L+DGFCK G++E A ++ 
Sbjct: 216 TLIHGHCQD------GNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELW 269

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             MI R I  +++ +  LI+ +C  G V EA R+   M++ G+KP   T   VI  +C++
Sbjct: 270 DGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRS 329

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           GD+      L  M + G  P   +YN L+N
Sbjct: 330 GDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 142/257 (55%), Gaps = 9/257 (3%)

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY+ LI   C+E  L++A  +++ M ++GL P+   +  +I+G CK GR         A+
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGR------YARAK 56

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            I+ EM   GL+PD  TY  LL   C+  +   A +I  EM+++G+  D V+F++L++ F
Sbjct: 57  GILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVF 116

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
            R   + +A    R+M K GL PD+  YT+++  +C+NG+     ++  EM   G +  V
Sbjct: 117 SRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDV 176

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL--- 437
             YN ++NGLCK   L +A+ L D M++ G +PD  T+  L+ GHC+ GN      L   
Sbjct: 177 IAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGT 236

Query: 438 QSEKGLVSDYACYTSLV 454
            +++ +  D   Y +L+
Sbjct: 237 MTQRNIKPDIVAYNTLI 253



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 6/241 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L ++ ++  +G  P   ++ VLMH  C+ G + +A  + DE  ++G     +++NT++N
Sbjct: 125 ALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN 184

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK K L +  +L   M   G  PD YT++ LI+G C++  +  A  L   M +R + P
Sbjct: 185 GLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKP 244

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + TLIDG CK       G+M++A ++ D M +  + P+ ITY IL++ +C  G + 
Sbjct: 245 DIVAYNTLIDGFCK------VGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVS 298

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +   MI++GI+   V    +I G+CR G   +A+  L  M+  G+ PD  +Y  +I
Sbjct: 299 EAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358

Query: 353 D 353
           +
Sbjct: 359 N 359



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           T  L  +  +      P +  +N L+   CK G+++ A  ++D    R +    +++  L
Sbjct: 228 TKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGIL 287

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           IN +C   ++ E FRL  VM   G++P + T + +I G C+      A+  L  M  +G+
Sbjct: 288 INAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGV 347

Query: 231 TPNDVIFTTLID 242
            P+ + + TLI+
Sbjct: 348 APDHISYNTLIN 359


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 183/331 (55%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  +N+++  LCK G+  +A+ +F+E   +G+  + +S+N+LI+G C A   +E  RL
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G++PD+ T++ LI+ LCKE ++ +A+ LL  M E G+ P+ V + +LI+G C 
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFC- 331

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                M GD+  AR++   M + G  PD I+Y +L++G+ K   +E A+ +  EM+  G 
Sbjct: 332 -----MVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 386

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + + + +L+ G    GKV +A+++   M   G+  +  TY + +D  CKN       +
Sbjct: 387 RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMK 446

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  E++S      +E  N L++GLCK G+L+ A  L + + + G  P+ +TY I++ G C
Sbjct: 447 LFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFC 506

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           + G  +  + L       G   D   Y +L+
Sbjct: 507 REGQVDKANVLIQKMEANGCTPDIITYNTLM 537



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 185/339 (54%), Gaps = 10/339 (2%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK---RGLHATAVSF 167
           T  L F+  ++    +PS+  FN L+  L    KIK    VF  + +    GL +   + 
Sbjct: 51  THALHFFHLMMRSTPTPSLSSFNHLLSGL---AKIKHYSQVFSLYNQMRLSGLSSDRCTL 107

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           N L+N  C    L EGF   + +   G  P++ TY+ LI GLC E+R+ +A  L   M +
Sbjct: 108 NILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQK 167

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGF 285
            G TP+ V + TLI G C  G I++A  +K  +++++++    +N  P+ ITY I++DG 
Sbjct: 168 LGCTPDVVTYGTLIKGLCGTGNINIA--LKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK G  + A  + +EM  +G+    +++ +LI GFC  GK  E++R+L EML  GL+PD 
Sbjct: 226 CKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDM 285

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            T+ ++ID  CK G      +LL  M   G +P + TYN+L+ G C  G L +A  L  +
Sbjct: 286 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVS 345

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLV 444
           M   G  PD I+YN+L+ G+ K    E+  KL +E  LV
Sbjct: 346 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLV 384



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 176/340 (51%), Gaps = 22/340 (6%)

Query: 97  CRCLIDRMMRTNLPTVTLGF--YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           C C ++R+          GF  +  IL  GYSP++  +N L+  LC E +I +A  +F  
Sbjct: 113 CLCNVNRLRE--------GFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLR 164

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR------PDVYTYSALING 208
             K G     V++ TLI G C   N++   +L   M     R      P+V TY+ +++G
Sbjct: 165 MQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDG 224

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LCK  R D+A+ L  EM  +G+ P+ + + +LI G C       AG  +E+++++DEM  
Sbjct: 225 LCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFC------CAGKWEESKRLLDEMLD 278

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL PD +T+ +L+D  CKEG +  A  +   MI+ GI  D V + +LI GFC  G +  
Sbjct: 279 QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNS 338

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +   M   G +PD  +Y ++I+ + K    +   +L  EM   G  P V TY++L+ 
Sbjct: 339 ARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 398

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           G+   G++ +A  L   M   G+  +  TY I L+G CK+
Sbjct: 399 GIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKN 438



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/322 (35%), Positives = 168/322 (52%), Gaps = 12/322 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G S      N+L++ LC   ++++    F    +RG     V++NTLI G C    + E 
Sbjct: 99  GLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEA 158

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC------ERGLTPNDVIF 237
            RL   M+  G  PDV TY  LI GLC    ++ A  L  EM       E    PN + +
Sbjct: 159 TRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITY 218

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             ++DG CK GR D      EA+++ +EM T G+ P  I+Y  L+ GFC  G  E +  +
Sbjct: 219 NIIVDGLCKVGRED------EAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             EM+ +G++ D V F  LI   C+ GKV+EA+++L  M++ G+ PD  TY  +I+ FC 
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            GD  +   L   M S G  P V +YN L+NG  K  +++ A  L + ML +G  P+ IT
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVIT 392

Query: 418 YNILLEGHCKHGNPEDFDKLQS 439
           Y+ LL+G    G  +D  KL S
Sbjct: 393 YDSLLKGIFLAGKVDDAKKLFS 414



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 153/340 (45%), Gaps = 76/340 (22%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+LD G  P +  FNVL+  LCKEGK+ +A+ +     + G+    V++N+LI G C   
Sbjct: 275 EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVG 334

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    L   M   G  PDV +Y+ LING  K  ++++A  L +EM   G  PN + + 
Sbjct: 335 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 394

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI------------------ 280
           +L+ G      I +AG + +A+K+   M  +G+  +  TY I                  
Sbjct: 395 SLLKG------IFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLF 448

Query: 281 -----------------LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
                            L+DG CK G LE+A ++ +++   G E + V +T +I GFCR 
Sbjct: 449 TELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCRE 508

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+V +A  ++++M   G  PD                                   + TY
Sbjct: 509 GQVDKANVLIQKMEANGCTPD-----------------------------------IITY 533

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           N LM G  +  +L+    LL  M    V PD IT +I+++
Sbjct: 534 NTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD 573



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L +A++ F  L+   F++      CLID + +          + ++ + G+ P+V  + +
Sbjct: 441 LFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTI 500

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           ++H  C+EG++  A ++  +    G     +++NTL+ G  ++  L+E  +L   M    
Sbjct: 501 MIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKD 560

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLL 222
           + PD  T S +++ L K+ +  +   LL
Sbjct: 561 VSPDAITCSIVVDMLSKDEKYQECLHLL 588


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 185/364 (50%), Gaps = 6/364 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +++A + F L++KH           +ID   +T       G Y EIL     P+V VF  
Sbjct: 250 MEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGT 309

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   CK  ++  A+ +F    K G+      +N LI+GHCK+ N+ E   L S ME   
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLN 369

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PDV+TY+ LINGLC E+++ +A  L  +M    + P+   + +LI G+CK        
Sbjct: 370 LSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEY------ 423

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           +M++A  +  EM  +G+ P+ IT++ L+DG+C   D+++A+ +  EM  +GI  D V +T
Sbjct: 424 NMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYT 483

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI    +   + EA R+  +ML+ G+ P+D T+  ++D F K G         +E    
Sbjct: 484 ALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQ 543

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
                   +  L+ GLC++G +  A+     M   G+ PD  +Y  +L+GH +     D 
Sbjct: 544 RSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDT 603

Query: 435 DKLQ 438
             LQ
Sbjct: 604 MMLQ 607



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 235/491 (47%), Gaps = 52/491 (10%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSAS-----LFASILETRGTHLPGLV 61
           L ++S ++H L     ++ AR L+  ++ +    S  S     LF ++ + +       V
Sbjct: 75  LQSFSAVIHVLTGAHKYTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPKFSIGV 134

Query: 62  LDALMIVYVDLGFLDDAIQCFR-----------------LLRKHYFRIPARGCRCLIDRM 104
              L++ ++++G  ++A+   R                 L+R+  F       + +I R 
Sbjct: 135 FSLLIMEFLEMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRG 194

Query: 105 MRTNLPTVTLGFYL------------------EILDYGYSPSVYVFNVLMHKLCKEGKIK 146
           +   +P V + F L                  E+   G  P+VY++ + +  LC++ K++
Sbjct: 195 L---VPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKME 251

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A+ +F+   K G+     +++ +I+G+CK  N+ + + L   +  + + P+V  +  L+
Sbjct: 252 EAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLV 311

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G CK   L  A  L   M + G+ PN  ++  LI GHCK      +G+M EA  ++ EM
Sbjct: 312 DGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCK------SGNMLEAVGLLSEM 365

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
            +  L+PD  TYTIL++G C E  +  A  + ++M    I   +  + +LI G+C+   +
Sbjct: 366 ESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNM 425

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            +A  +  EM   G++P+  T++ +ID +C   D K    L  EM   G +P V TY AL
Sbjct: 426 EQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTAL 485

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGL 443
           ++   K   +K A  L   ML+ G+ P+D T+  L++G  K G      DF +  +++  
Sbjct: 486 IDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRS 545

Query: 444 VSDYACYTSLV 454
             ++  +T L+
Sbjct: 546 CWNHVGFTCLI 556



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 140/309 (45%), Gaps = 41/309 (13%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLI    ++      +G   E+     SP V+ + +L++ LC E ++ +A  +F +    
Sbjct: 344 CLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNE 403

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +  ++ ++N+LI+G+CK  N+++   L S M  SG+ P++ T+S LI+G C    +  A
Sbjct: 404 RIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAA 463

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD---- 274
             L  EM  +G+ P+ V +T LID H K        +MKEA ++  +M   G++P+    
Sbjct: 464 MGLYFEMTIKGIVPDVVTYTALIDAHFKEA------NMKEALRLYSDMLEAGIHPNDHTF 517

Query: 275 -------------------------------KITYTILLDGFCKEGDLESALDIRKEMIK 303
                                           + +T L++G C+ G +  A     +M  
Sbjct: 518 ACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRS 577

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  D  ++ +++ G  +  ++ +   +  +M+K G+ P+     ++   +  NG  K+
Sbjct: 578 CGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVKS 637

Query: 364 GFRLLKEMR 372
              L    R
Sbjct: 638 ACFLTNSSR 646


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 197/396 (49%), Gaps = 16/396 (4%)

Query: 74  FLDDAIQCF-----RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL-EILDYGYSP 127
           F    + CF     RL+R   F  PA   R L+ +  R       +  +L EI   G+  
Sbjct: 103 FYKHNMNCFISMLNRLVRDRVFA-PADHIRILMIKACRNEEEIRRVADFLNEISGMGFGF 161

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+Y  N L+ +L K   ++ A+ ++ +    G+  + ++FNTLIN   K   + E   + 
Sbjct: 162 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELIL 221

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S +    + PDV+TY++LI G C+   LD A  +   M + G  PN V ++TLI+G C  
Sbjct: 222 SQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 281

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR+D A DM      ++EM   G+ P   TYT+ +   C     E A+++   M KRG  
Sbjct: 282 GRVDEALDM------LEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            +   +TALISG  R GK+  A  +  +MLK GL P+  TY  +I+  C  G   T  ++
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M   G L   +TYN ++ GLC  G ++ A +L + ML +G +P  +TYN L+ G+  
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455

Query: 428 HGNPEDFDK---LQSEKGLVSDYACYTSLVSKSSKY 460
            GN  +  +   L  E G   D   Y  LVS  SK+
Sbjct: 456 KGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 176/374 (47%), Gaps = 71/374 (18%)

Query: 91  RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           R+  RGCR        LI  + R     V +G Y ++L  G  P+   +N L+++LC  G
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 144 K-----------------------------------IKDAQMVFDEFGKRGLHATAVSFN 168
           +                                   I+ A ++F++  K G   T V++N
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 447

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           TLING+    N++   RL  +M+ +G  PD +TY+ L++G  K  +L+ A     EM E 
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEA 259
           GL PN V +T LIDGH K+G++D+A                                 EA
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            KI D+M   GL P+ ITYT L+DG C+ G  + A  I  +M KR    +   +++LI G
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C+ GK  EAE +L+EM + GL PD+ T+T +ID F   G     F LL+ M   G  P 
Sbjct: 628 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPN 687

Query: 380 VETYNALMNGLCKH 393
             TY+ L+ GL K 
Sbjct: 688 YRTYSVLLKGLQKE 701



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 193/376 (51%), Gaps = 34/376 (9%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           +  G +  ++  G  P+   ++ L++ LC EG++ +A  + +E  ++G+  T  ++   I
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
              C  ++ +E   L + M+  G RP+V TY+ALI+GL +  +L+ A  L H+M + GL 
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 232 PNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKI 262
           PN V +  LI+  C  GR   A                             GD+++A  +
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            ++M   G  P  +TY  L++G+  +G++ +A  +   M + G E D   +  L+SGF +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            GK+  A    +EM++ GL P+  +YT +ID   K+G       LLK M   G  P VE+
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE----DFDKLQ 438
           YNA++NGL K  +   A  + D M++ G++P+ ITY  L++G C++G  +     F  ++
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 439 SEKGLVSDYACYTSLV 454
             K L + Y  Y+SL+
Sbjct: 611 KRKCLPNLYT-YSSLI 625



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 173/334 (51%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +  L+  L + GK++ A  ++ +  K GL    V++N LIN  C        
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTA 392

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   MEG G   +  TY+ +I GLC    ++ A +L  +M + G  P  V + TLI+G
Sbjct: 393 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +   G ++       A +++D M  NG  PD+ TY  L+ GF K G LESA    +EM++
Sbjct: 453 YLTKGNVN------NAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVE 506

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V++TALI G  + GKV  A  +L+ M ++G  P+  +Y  VI+   K      
Sbjct: 507 CGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSE 566

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++  +M   G LP V TY  L++GLC++G+ + A  +   M     +P+  TY+ L+ 
Sbjct: 567 AEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIY 626

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G C+ G  ++ + L  E   KGL  D   +TSL+
Sbjct: 627 GLCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 660


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 197/396 (49%), Gaps = 16/396 (4%)

Query: 74  FLDDAIQCF-----RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL-EILDYGYSP 127
           F    + CF     RL+R   F  PA   R L+ +  R       +  +L EI   G+  
Sbjct: 103 FYKHNMNCFISMLNRLVRDRVFA-PADHIRILMIKACRNEEEIRRVADFLNEISGMGFGF 161

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+Y  N L+ +L K   ++ A+ ++ +    G+  + ++FNTLIN   K   + E   + 
Sbjct: 162 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELIL 221

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S +    + PDV+TY++LI G C+   LD A  +   M + G  PN V ++TLI+G C  
Sbjct: 222 SQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 281

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR+D A DM      ++EM   G+ P   TYT+ +   C     E A+++   M KRG  
Sbjct: 282 GRVDEALDM------LEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            +   +TALISG  R GK+  A  +  +MLK GL P+  TY  +I+  C  G   T  ++
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M   G L   +TYN ++ GLC  G ++ A +L + ML +G +P  +TYN L+ G+  
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455

Query: 428 HGNPEDFDK---LQSEKGLVSDYACYTSLVSKSSKY 460
            GN  +  +   L  E G   D   Y  LVS  SK+
Sbjct: 456 KGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 194/441 (43%), Gaps = 102/441 (23%)

Query: 91  RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           R+  RGCR        LI  + R     V +G Y ++L  G  P+   +N L+++LC  G
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 144 K-----------------------------------IKDAQMVFDEFGKRGLHATAVSFN 168
           +                                   I+ A ++F++  K G   T V++N
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 447

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           TLING+    N++   RL  +M+ +G  PD +TY+ L++G  K  +L+ A     EM E 
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEA 259
           GL PN V +T LIDGH K+G++D+A                                 EA
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR--------------- 304
            KI D+M   GL P+ ITYT L+DG C+ G  + A  I  +M KR               
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 305 ----------------GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
                           G E     ++ L+SG CR G+  EAE+++++M + G  PD   Y
Sbjct: 628 LCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIY 687

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             ++   CKN +     ++   + + G    +  Y AL+  LCK GQ++ A  L D ML+
Sbjct: 688 YSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE 747

Query: 409 LGVVPDDITYNILLEGHCKHG 429
                D+I + +L++G  K G
Sbjct: 748 KEWNADEIVWTVLVDGLLKEG 768



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 193/376 (51%), Gaps = 34/376 (9%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           +  G +  ++  G  P+   ++ L++ LC EG++ +A  + +E  ++G+  T  ++   I
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
              C  ++ +E   L + M+  G RP+V TY+ALI+GL +  +L+ A  L H+M + GL 
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 232 PNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKI 262
           PN V +  LI+  C  GR   A                             GD+++A  +
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            ++M   G  P  +TY  L++G+  +G++ +A  +   M + G E D   +  L+SGF +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            GK+  A    +EM++ GL P+  +YT +ID   K+G       LLK M   G  P VE+
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE----DFDKLQ 438
           YNA++NGL K  +   A  + D M++ G++P+ ITY  L++G C++G  +     F  ++
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 439 SEKGLVSDYACYTSLV 454
             K L + Y  Y+SL+
Sbjct: 611 KRKCLPNLYT-YSSLI 625



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 173/332 (52%), Gaps = 7/332 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +  L+  L + GK++ A  ++ +  K GL    V++N LIN  C        
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTA 392

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   MEG G   +  TY+ +I GLC    ++ A +L  +M + G  P  V + TLI+G
Sbjct: 393 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +   G ++ A       +++D M  NG  PD+ TY  L+ GF K G LESA    +EM++
Sbjct: 453 YLTKGNVNNAA------RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVE 506

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V++TALI G  + GKV  A  +L+ M ++G  P+  +Y  VI+   K      
Sbjct: 507 CGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSE 566

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++  +M   G LP V TY  L++GLC++G+ + A  +   M     +P+  TY+ L+ 
Sbjct: 567 AEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIY 626

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           G C+ G  ++ +++ SE G       Y++LVS
Sbjct: 627 GLCQEGKADEAERM-SEIGCEPTLDTYSTLVS 657



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 176/370 (47%), Gaps = 10/370 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG  ++A+    +++  G        + L+  +   G L+ A   F+ + +         
Sbjct: 456 KGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVS 515

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              LID   +     + L     + + G +P+V  +N +++ L KE +  +A+ + D+  
Sbjct: 516 YTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV 575

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           ++GL    +++ TLI+G C+       F++   ME     P++YTYS+LI GLC+E + D
Sbjct: 576 EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKAD 635

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +AE     M E G  P    ++TL+ G C+ GR        EA ++V +M   G  PD+ 
Sbjct: 636 EAE----RMSEIGCEPTLDTYSTLVSGLCRKGR------FYEAEQLVKDMKERGFCPDRE 685

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y  LL   CK  +++ AL I   +  +G +L    + ALI   C+ G+V EA+ +   M
Sbjct: 686 IYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNM 745

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L+     D+  +T+++D   K G+     +LL  M S    P ++TY  L   L + G+ 
Sbjct: 746 LEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKS 805

Query: 397 KNANMLLDTM 406
             +  L D +
Sbjct: 806 IESEPLADKL 815


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 179/334 (53%), Gaps = 9/334 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  + +L+      GKI + + +F+E  ++G+ A    +  +IN +CK  N    F L  
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +   G+  +V+TY ALI+G+CK   ++ AE+L++EM  RGL  N +I+ TLIDG+CK G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            ID      EA K+   M   G   D  T   + DG  K    E A      MI++G+  
Sbjct: 121 LID------EAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVP 174

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + V++T LI  +C+ G  VEA+++ +EM K G +P+  TY ++ID   K G  K  + L 
Sbjct: 175 NVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELR 234

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EMR+ G  P + TY +L++G C  G+L +A  L + +   G+  + +TY  ++ G  K 
Sbjct: 235 DEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKE 294

Query: 429 GNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           G  E+  KL    +E GL  D   YTSLVS   K
Sbjct: 295 GRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 160/280 (57%), Gaps = 6/280 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
               + E+ + G   +V+ +  L+  +CK G+++ A+++ +E   RGL    + +NTLI+
Sbjct: 55  AFALFDELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLID 114

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CK   +DE F+++ +ME  G   D+YT + + +GL K N+ ++A+  L  M E+G+ P
Sbjct: 115 GYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVP 174

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V +TTLID +CK       G+  EA+K+  EM   G  P+ +TY +L+DG  K+G ++
Sbjct: 175 NVVSYTTLIDIYCKE------GNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMK 228

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++R EM  +GI  D   +T+L+ G C  GK+ +A  +  E+ + GL  +  TYT +I
Sbjct: 229 EAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAII 288

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
               K G ++  F+L  EM   G  P    Y +L++ L K
Sbjct: 289 SGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 158/306 (51%), Gaps = 6/306 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+ + G    ++V+ V+++  CK G  K A  +FDE  ++GL A   ++  LI+G CK
Sbjct: 24  FEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCK 83

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A  ++    L + M+  G+  +   Y+ LI+G CK   +D+A  +   M ++G   +   
Sbjct: 84  AGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYT 143

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
             T+ DG  K  + +      EA++ +  M   G+ P+ ++YT L+D +CKEG+   A  
Sbjct: 144 LNTIADGLRKLNQPE------EAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKK 197

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM K G E + V +  LI G  + G++ EA  +  EM   G+ PD  TYT ++   C
Sbjct: 198 LFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGEC 257

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             G       L  E+R  G    V TY A+++GL K G+ + A  L D M + G+ PDD 
Sbjct: 258 IFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDR 317

Query: 417 TYNILL 422
            Y  L+
Sbjct: 318 VYTSLV 323



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           V K G   +A +  + ++TRG  +  L+ + L+  Y   G +D+A +   ++ K  F   
Sbjct: 81  VCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFEND 140

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 + D + + N P     + L +++ G  P+V  +  L+   CKEG   +A+ +F 
Sbjct: 141 IYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQ 200

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E  K G    AV++N LI+GH K   + E + L+  M   G+ PD+YTY++L++G C   
Sbjct: 201 EMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFG 260

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           +LDDA  L +E+ ++GL  N V +T +I G  K GR       +EA K+ DEM   GL P
Sbjct: 261 KLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGR------SEEAFKLYDEMTEAGLTP 314

Query: 274 DKITYTILLDGFCK 287
           D   YT L+    K
Sbjct: 315 DDRVYTSLVSSLHK 328


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 197/396 (49%), Gaps = 16/396 (4%)

Query: 74  FLDDAIQCF-----RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL-EILDYGYSP 127
           F    + CF     RL+R   F  PA   R L+ +  R       +  +L EI   G+  
Sbjct: 145 FYKHNMNCFISMLNRLVRDRVFA-PADHIRILMIKACRNEEEIRRVADFLNEISGMGFGF 203

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+Y  N L+ +L K   ++ A+ ++ +    G+  + ++FNTLIN   K   + E   + 
Sbjct: 204 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELIL 263

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S +    + PDV+TY++LI G C+   LD A  +   M + G  PN V ++TLI+G C  
Sbjct: 264 SQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 323

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR+D A DM      ++EM   G+ P   TYT+ +   C     E A+++   M KRG  
Sbjct: 324 GRVDEALDM------LEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 377

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            +   +TALISG  R GK+  A  +  +MLK GL P+  TY  +I+  C  G   T  ++
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 437

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M   G L   +TYN ++ GLC  G ++ A +L + ML +G +P  +TYN L+ G+  
Sbjct: 438 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 497

Query: 428 HGNPEDFDK---LQSEKGLVSDYACYTSLVSKSSKY 460
            GN  +  +   L  E G   D   Y  LVS  SK+
Sbjct: 498 KGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 533



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 179/341 (52%), Gaps = 13/341 (3%)

Query: 91  RIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           R+  RGCR        LI  + R     V +G Y ++L  G  P+   +N L+++LC  G
Sbjct: 370 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 429

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +   A  +F      G  A   ++N +I G C   ++++   L   M   G  P V TY+
Sbjct: 430 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 489

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LING   +  +++A  LL  M E G  P++  +  L+ G  K G+++       A    
Sbjct: 490 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE------SASFYF 543

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM   GLNP+ ++YT L+DG  K+G ++ AL + + M + G   +  ++ A+I+G  + 
Sbjct: 544 QEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKE 603

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            +  EAE++  +M + GL P+  TYT +ID  C+NG T+  F++  +M     LP + TY
Sbjct: 604 NRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 663

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           ++L+ GLC+ G+   A +LL  M   G+ PD++T+  L++G
Sbjct: 664 SSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDG 704



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 192/376 (51%), Gaps = 34/376 (9%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           +  G +  ++  G  P+   ++ L++ LC EG++ +A  + +E  ++G+  T  ++   I
Sbjct: 293 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 352

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
              C  ++ +E   L + M+  G RP+V TY+ALI+GL +  +L+ A  L H+M + GL 
Sbjct: 353 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 412

Query: 232 PNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKI 262
           PN V +  LI+  C  GR   A                             GD+++A  +
Sbjct: 413 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 472

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            ++M   G  P  +TY  L++G+  +G++ +A  +   M + G E D   +  L+SGF +
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            GK+  A    +EM++ GL P+  +YT +ID   K+G       LL+ M   G  P VE+
Sbjct: 533 WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVES 592

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE----DFDKLQ 438
           YNA++NGL K  +   A  + D M + G++P+ ITY  L++G C++G  +     F  ++
Sbjct: 593 YNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 652

Query: 439 SEKGLVSDYACYTSLV 454
             K L + Y  Y+SL+
Sbjct: 653 KRKCLPNLYT-YSSLI 667



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 203/417 (48%), Gaps = 30/417 (7%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG  ++A+    +++  G        + L+  +   G L+ A   F+ + +         
Sbjct: 498 KGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVS 557

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              LID   +     + L     + + G +P+V  +N +++ L KE +  +A+ + D+  
Sbjct: 558 YTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMA 617

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           ++GL    +++ TLI+G C+       F++   ME     P++YTYS+LI GLC+E + D
Sbjct: 618 EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKAD 677

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +AE+LL EM  +GL P++V FT+LIDG    GRID A  +   R++VD  C     P+  
Sbjct: 678 EAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL--LRRMVDVGC----KPNYR 731

Query: 277 TYTILLDGFCKEG------------------------DLESALDIRKEMIKRGIELDNVA 312
           TY++LL G  KE                         + E   ++   M + G E     
Sbjct: 732 TYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDT 791

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           ++ L+SG CR G+  EAE+++++M + G  PD   Y  ++   CKN +     ++   + 
Sbjct: 792 YSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIE 851

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           + G    +  Y AL+  LCK GQ++ A  L D ML+     D+I + +L++G  K G
Sbjct: 852 AKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEG 908



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 171/334 (51%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +  L+  L + GK++ A  ++ +  K GL    V++N LIN  C        
Sbjct: 375 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTA 434

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   MEG G   +  TY+ +I GLC    ++ A +L  +M + G  P  V + TLI+G
Sbjct: 435 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 494

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +   G ++ A       +++D M  NG  PD+ TY  L+ GF K G LESA    +EM++
Sbjct: 495 YLTKGNVNNAA------RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVE 548

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  + V++T LI G  + GKV  A  +L  M ++G  P+  +Y  VI+   K      
Sbjct: 549 CGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSE 608

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++  +M   G LP V TY  L++GLC++G+ + A  +   M     +P+  TY+ L+ 
Sbjct: 609 AEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIY 668

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G C+ G  ++ + L  E   KGL  D   +TSL+
Sbjct: 669 GLCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 702



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 152/331 (45%), Gaps = 30/331 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + R          + ++      P++Y ++ L++ LC+EGK  +A+++  E  ++G
Sbjct: 631 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKG 690

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V+F +LI+G      +D  F L   M   G +P+  TYS L+ GL KE  L + +
Sbjct: 691 LAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEK 750

Query: 220 L------------------------LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
           +                        LL  M E G  P    ++TL+ G C+ GR      
Sbjct: 751 VAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGR------ 804

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
             EA ++V +M   G  PD+  Y  LL   CK  +++ AL I   +  +G +L    + A
Sbjct: 805 FYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRA 864

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI   C+ G+V EA+ +   ML+     D+  +T+++D   K G+     +LL  M S  
Sbjct: 865 LICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKN 924

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             P ++TY  L   L + G+   +  L D +
Sbjct: 925 FTPNIQTYVILGRELSRIGKSIESEPLADKL 955


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 185/369 (50%), Gaps = 32/369 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G    V  FNVL+  LCK  +++ A ++ +E    GL    ++F TL+ G  +  
Sbjct: 148 KMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEG 207

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+   ++K  M G G      +   L+NG CKE R+++A   + E+ E G +P+ V F 
Sbjct: 208 DLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFN 267

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           +L++G C+ G ++ A                             G+ ++A +I+ +M   
Sbjct: 268 SLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILR 327

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
             +P+ +TY  L+   CKE ++E+A D+ + ++ +G+  D   F  LI G C       A
Sbjct: 328 ECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIA 387

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             M  EM   G KPD+ TY+++ID  C     K    LLKEM S G       YN L++G
Sbjct: 388 MEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDG 447

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
           LCK  ++++A  + D M  LGV    +TYN L++G CK+   E+  +L  +   +GL  D
Sbjct: 448 LCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPD 507

Query: 447 YACYTSLVS 455
              Y SL++
Sbjct: 508 KFTYNSLLT 516



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 178/369 (48%), Gaps = 32/369 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L YG   +     VL++  CKEG++++A     E  + G     V+FN+L+NG C+  
Sbjct: 218 QMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIG 277

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+++   +   M   G  PDVYTY++LI+G+CK    + A  +L +M  R  +PN V + 
Sbjct: 278 NVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYN 337

Query: 239 TLIDGHCKNGRIDMAGDMKE-----------------------------ARKIVDEMCTN 269
           TLI   CK   I+ A D+                               A ++ +EM   
Sbjct: 338 TLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNK 397

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD+ TY+IL+D  C E  L+ AL + KEM   G   + V +  LI G C+  ++ +A
Sbjct: 398 GCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDA 457

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           E +  +M  +G+     TY  +ID  CKN   +   +L+ +M  +G  P   TYN+L+  
Sbjct: 458 EEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTY 517

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
            C+ G ++ A  ++ TM   G  PD  TY  L+ G C+ G  +   KL      KG+V  
Sbjct: 518 FCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLT 577

Query: 447 YACYTSLVS 455
              Y  ++ 
Sbjct: 578 PHAYNPVIQ 586



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 201/419 (47%), Gaps = 10/419 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G    A  F   +   G     +  ++L+  +  +G ++DA+     + +  F     
Sbjct: 240 KEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVY 299

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI  M +       +    +++    SP+   +N L+  LCKE +I+ A  +    
Sbjct: 300 TYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARIL 359

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +GL     +FNTLI G C +KN D    +   M+  G +PD +TYS LI+ LC E RL
Sbjct: 360 VSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRL 419

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +A +LL EM   G   N V++ TLIDG CK+ RI+      +A +I D+M   G++   
Sbjct: 420 KEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIE------DAEEIFDQMELLGVSRSS 473

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +TY  L+DG CK   +E A  +  +MI  G++ D   + +L++ FCR G + +A  +++ 
Sbjct: 474 VTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQT 533

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   G +PD  TY  +I   C+ G      +LL+ ++  G +     YN ++  L    +
Sbjct: 534 MASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKR 593

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACY 450
            K    L   M++    PD +T+ I+  G C  G P     DF     EKG++ ++  +
Sbjct: 594 TKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSF 652



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 166/326 (50%), Gaps = 13/326 (3%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            L+ +L +         +  +    G    A +F TLI       N  E   L  ++E  
Sbjct: 60  TLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSF---TNFHEIENLLKILENE 116

Query: 194 -GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G +PD   Y+  +N L ++N+L   E+L  +M   G+  +   F  LI   CK      
Sbjct: 117 LGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCK------ 170

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A  ++ A  +++EM  +GL PD+IT+T L+ GF +EGDL  AL ++K+M+  G  L NV+
Sbjct: 171 AHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVS 230

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
              L++GFC+ G+V EA R + E+ + G  PD  T+  +++ FC+ G+      ++  M 
Sbjct: 231 VKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMI 290

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P V TYN+L++G+CK G+ + A  +L  M+     P+ +TYN L+   CK    E
Sbjct: 291 EKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIE 350

Query: 433 ---DFDKLQSEKGLVSDYACYTSLVS 455
              D  ++   KGL+ D   + +L+ 
Sbjct: 351 AATDLARILVSKGLLPDVCTFNTLIQ 376



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 160/305 (52%), Gaps = 6/305 (1%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G+ P    +N+ ++ L ++ K+K  +M+  +    G+     +FN LI   CKA  L 
Sbjct: 116 ELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLR 175

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               +   M   G++PD  T++ L+ G  +E  L+ A  +  +M   G    +V    L+
Sbjct: 176 PAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLV 235

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G CK GR++      EA + V E+   G +PD++T+  L++GFC+ G++  ALDI   M
Sbjct: 236 NGFCKEGRVE------EALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFM 289

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           I++G + D   + +LISG C+ G+  +A  +L++M+     P+  TY  +I   CK  + 
Sbjct: 290 IEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEI 349

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L + + S G LP V T+N L+ GLC       A  + + M + G  PD+ TY+IL
Sbjct: 350 EAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSIL 409

Query: 422 LEGHC 426
           ++  C
Sbjct: 410 IDSLC 414



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 44/333 (13%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + +  + E+ + G  P  + +++L+  LC E ++K+A M+  E    G    AV +NTLI
Sbjct: 386 IAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLI 445

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G CK++ +++   +   ME  G+     TY+ LI+GLCK  R+++A  L+ +M   GL 
Sbjct: 446 DGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLK 505

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   + +L+   C+ G I+ AGD      IV  M +NG  PD  TY  L+ G C+ G +
Sbjct: 506 PDKFTYNSLLTYFCRVGDIEKAGD------IVQTMASNGCEPDIFTYGTLIGGLCRAGRV 559

Query: 292 ESALDIRKEMIKRGIELDNVAFTALIS--------------------------------- 318
           + A  + + +  +GI L   A+  +I                                  
Sbjct: 560 DVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIV 619

Query: 319 --GFCRGG-KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
             G C GG  + EA     EML+ G+ P+  ++  + +  C      T   L+  +    
Sbjct: 620 FRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKA 679

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            +   ET  +++ G  K  +  +A   L  +LD
Sbjct: 680 QMSERET--SMIRGFLKIRKFNDALANLGGILD 710


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 181/348 (52%), Gaps = 33/348 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY  SV  +  L+  LCK G +  AQ +  +    G     V++  LI+G CKA+   + 
Sbjct: 5   GYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDA 64

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +    M  SG  PD+ TY++LI+GLC  NR+DDA L+L E+   G  PN + ++TL+  
Sbjct: 65  IQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIW 124

Query: 244 HCKNGRIDMAGDMK-----------------------EAR--------KIVDEMCTNGLN 272
           +C+  R+D A  +                        EAR        +  DEM  +G  
Sbjct: 125 NCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRI 184

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD +TY   + G CK G L+  L++ +EM + GI  D V F ++ISG C+  ++ +A ++
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQV 244

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS--DGHLPAVETYNALMNGL 390
            + ML+ G  PD  TY++++D   +     T   +L+ M++   G +  V T+NA +  L
Sbjct: 245 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGAL 304

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
           C+ G+   A  +L  M++ G +P+ ++YN +++G CK GN +D  KL 
Sbjct: 305 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLS 352



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 33/310 (10%)

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           DE  + G     V++NT I+G CKA  LD+G  +   M+  G+ PDV T+ ++I+GLCK 
Sbjct: 176 DEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKA 235

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE-------------- 258
           NR+DDA  +   M ERG  P+ + ++ ++D   +  R+D   ++ E              
Sbjct: 236 NRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVY 295

Query: 259 -----------------ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
                            A+ I+  M  +G  P+ ++Y  ++DG CK G+++ A  + ++M
Sbjct: 296 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 355

Query: 302 IKRGI-ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL-KPDDATYTMVIDCFCKNG 359
           +  G  + D + F  LISGFC+ G++ +A ++L EM    +  PD  TY  +ID   K G
Sbjct: 356 LDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFG 415

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             K    LL+EM++ G  P V TY AL+NG  KHG  + A  L D M   G  PD ITYN
Sbjct: 416 SLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYN 475

Query: 420 ILLEGHCKHG 429
            +L    K G
Sbjct: 476 TVLSAFSKAG 485



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 180/381 (47%), Gaps = 48/381 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G  P V  +N  +  LCK GK+     + +E  + G+    V+F ++I+G CKA 
Sbjct: 177 EMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKAN 236

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM------------- 225
            +D+ F++   M   G  PD  TYS +++ L + NRLD  + +L  M             
Sbjct: 237 RIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYT 296

Query: 226 ------------------------CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
                                    E G  PN + +  +IDG CK+G +D A   K +RK
Sbjct: 297 HNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDA--WKLSRK 354

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL-DNVAFTALISGF 320
           ++D  C     PD I +  L+ GFCK G L  A  +  EM  + I + D V +  LI G 
Sbjct: 355 MLDSGCCK---PDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQ 411

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
            + G + +A+ +L+EM  VG KP+  TY  +I+ + K+G  +    L  EM + G  P +
Sbjct: 412 SKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDI 471

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLG--VVPDDITYNILLEGHCKHGNPEDFDKLQ 438
            TYN +++   K G +  A  +   + +      PD ITY IL++G+C+  + E    L 
Sbjct: 472 ITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLL 531

Query: 439 SE---KGLVSDYACYTSLVSK 456
            E   +G   D   Y  L++K
Sbjct: 532 QEMTARGWSCDSYTYNVLIAK 552



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 186/370 (50%), Gaps = 27/370 (7%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTN-LPTV-TLGFYLEILDYGY 125
           +DDA Q F+ + +       RGC         ++D + R N L TV  +  +++ +  G 
Sbjct: 238 IDDAFQVFKGMLE-------RGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGC 290

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
              VY  N  +  LC+ GK   A+ +     + G     +S+N +I+G CK+ N+D+ ++
Sbjct: 291 VMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWK 350

Query: 186 LKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL-TPNDVIFTTLIDG 243
           L   M  SG  +PDV  ++ LI+G CK  RL  A  LL EM  + +  P+ V + TLIDG
Sbjct: 351 LSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDG 410

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K       G +K+A+ ++ EM   G  P+ +TY  L++G+ K G  E A  +  EM  
Sbjct: 411 QSK------FGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSA 464

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG--LKPDDATYTMVIDCFCKNGDT 361
           +G   D + +  ++S F + G + +AE + +++        PD  TY ++ID +C+  DT
Sbjct: 465 KGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDT 524

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN-ANMLLDTMLDLGVVPDDITYNI 420
           + G  LL+EM + G      TYN L+  L +  ++ + A  +   MLD   VP    +N 
Sbjct: 525 EQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNS 584

Query: 421 LLEGHCKHGN 430
           L+    + G+
Sbjct: 585 LVRLFLRTGD 594



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 135/280 (48%), Gaps = 33/280 (11%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  +G    V TY+ LI+GLCK   LD A+ LL +M + G  PN V +T LIDG CK  R
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 250 -----------------------------IDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
                                        + MA  M +A  ++ E+  NG  P+ ITY+ 
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR---EML 337
           L+   C+   L+ A  + +EMI RG   + V +   I GFC   +   +    R   EM+
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCE-ARCQSSRYECRDGDEMI 179

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G  PD  TY   I   CK G    G  +L+EM   G  P V T+ ++++GLCK  ++ 
Sbjct: 180 ESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRID 239

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           +A  +   ML+ G VPD +TY+I+L+   +    +  D++
Sbjct: 240 DAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEV 279



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 7/271 (2%)

Query: 119 EILDYGY-SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCK 176
           ++LD G   P V  FN L+   CK G++  A  +  E   + +     V++NTLI+G  K
Sbjct: 354 KMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSK 413

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +L +   L   M+  G +P+V TY+ALING  K    ++AE L  EM  +G  P+ + 
Sbjct: 414 FGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIIT 473

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T++    K G +  A  + +  K     C+    PD ITY IL+DG+C+  D E  L 
Sbjct: 474 YNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCS----PDAITYRILIDGYCRAEDTEQGLT 529

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKV-VEAERMLREMLKVGLKPDDATYTMVIDCF 355
           + +EM  RG   D+  +  LI+      +V  +A  + ++ML     P  + +  ++  F
Sbjct: 530 LLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLF 589

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            + GD  +   +++EM   GHL       AL
Sbjct: 590 LRTGDVNSARSMVQEMNEKGHLVDASNLEAL 620



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 40/230 (17%)

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M  NG +   +TYT L+DG CK GDL++A  + ++M   G   + V +TALI G C+  +
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
             +A + ++ ML+ G +PD  TY  +I   C          +L+E+  +G  P   TY+ 
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 386 LMNGLCKHGQLKNANMLL-------------------------------------DTMLD 408
           L+   C+  +L  A  L+                                     D M++
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIE 180

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            G +PD +TYN  + G CK G  +   ++  E    G+  D   + S++S
Sbjct: 181 SGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIIS 230


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 180/355 (50%), Gaps = 23/355 (6%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P   ++N L+    K      A     E  K     T V++  +++G CKA+   
Sbjct: 70  EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTR 129

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  +L   M   G  P++YTY+ ++ GLC+E +LD+A+ +L EM  RG  P+ V + + I
Sbjct: 130 DAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFI 189

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G CK  R+D      EARK +  M    + PD ++YT +++G CK GDL+SA  +   M
Sbjct: 190 KGLCKCDRVD------EARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHM 240

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RG   D V +++LI GFC+GG+V  A  +L  MLK+G +P+   Y  ++    + G  
Sbjct: 241 SNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHI 300

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-------- 413
                +L EM   G  P V +YNA ++GLCK  ++K A  + D M++ G  P        
Sbjct: 301 GKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 360

Query: 414 --DDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
             D + Y +LL+G CK G  ++    F K+  EK    D   Y  ++    K RQ
Sbjct: 361 IVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQ 415



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 193/380 (50%), Gaps = 47/380 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G SP++Y +NV++  LC+E K+ +A+ + +E   RG     V++N+ I G CK  
Sbjct: 137 EMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCD 196

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  +  + M    + PDV +Y+ +INGLCK   LD A  +L  M  RG TP+ V ++
Sbjct: 197 RVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYS 253

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
           +LIDG CK G ++ A                             G + +A  ++ EM   
Sbjct: 254 SLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERR 313

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG----------IELDNVAFTALISG 319
           G  PD ++Y   +DG CK   ++ A  +   M++RG          + +D + +T L+ G
Sbjct: 314 GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDG 373

Query: 320 FCRGGKVVEAERMLREMLKVGL-KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            C+GG+  EA  +  ++L   + +PD   Y +++D  CK        ++ K+M  + +  
Sbjct: 374 LCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML-EKNCC 432

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
            V T+N L++GLC   +L +A  +L TM+D G +PD +TY  L++  CK G      +L 
Sbjct: 433 NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELF 492

Query: 439 SEK---GLVSDYACYTSLVS 455
            E    G V D   Y++L++
Sbjct: 493 EEAVKGGCVPDVVTYSALIT 512



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 176/346 (50%), Gaps = 24/346 (6%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E++     P+V  +  ++  LCK  + +DA  + DE   +G      ++N ++ G C
Sbjct: 99  FLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLC 158

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           + + LDE  ++   M   G  PDV TY++ I GLCK +R+D+A   L  M    +TP+ V
Sbjct: 159 EERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVV 215

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +TT+I+G CK      +GD+  A +++D M   G  PD +TY+ L+DGFCK G++E A+
Sbjct: 216 SYTTVINGLCK------SGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAM 269

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   M+K G   + VA+ +L+    R G + +AE ML EM + G  PD  +Y   ID  
Sbjct: 270 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYN----------ALMNGLCKHGQLKNANMLLDT 405
           CK    K    +   M   G  P   +Y+           L++GLCK G+   A  L   
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSK 389

Query: 406 MLDLGVV-PDDITYNILLEGHCKHGNPEDFDK-LQSEKGLVSDYAC 449
           +LD  +  PD   YN++L+ HCK       DK LQ  K ++    C
Sbjct: 390 VLDEKICEPDVFFYNVMLDSHCKR---RQIDKALQIHKQMLEKNCC 432



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 16/336 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY  +V+ +N L+ +L +E +   A  VF E   +     A +F  L+ G C++  L++ 
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M+  G  PD   Y+ALI+G  K      A   L EM +    P  V +T ++DG
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK  R       ++A K++DEM   G +P+  TY ++++G C+E  L+ A  + +EM  
Sbjct: 122 LCKAERT------RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAV 175

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG   D V + + I G C+  +V EA + L  M    + PD  +YT VI+  CK+GD  +
Sbjct: 176 RGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDS 232

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R+L  M + G  P V TY++L++G CK G+++ A  LLD+ML LG  P+ + YN LL 
Sbjct: 233 ASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG 292

Query: 424 -----GHCKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
                GH   G  ED       +G   D   Y + +
Sbjct: 293 ALHRLGHI--GKAEDMLVEMERRGFTPDVVSYNACI 326



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 18/309 (5%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P V  ++ L+   CK G+++ A  + D   K G     V++N+L+    +  ++ + 
Sbjct: 244 GCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKA 303

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND--------- 234
             +   ME  G  PDV +Y+A I+GLCK  R+  A+ +   M ERG TPN          
Sbjct: 304 EDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVD 363

Query: 235 -VIFTTLIDGHCKNGRIDMAGDMKEARKIVDE-MCTNGLNPDKITYTILLDGFCKEGDLE 292
            +++T L+DG CK GR D A  +    K++DE +C     PD   Y ++LD  CK   ++
Sbjct: 364 ILLYTVLLDGLCKGGRFDEACAL--FSKVLDEKIC----EPDVFFYNVMLDSHCKRRQID 417

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            AL I K+M+++    + V +  L+ G C   ++ +AE ML  M+  G  PD  TY  ++
Sbjct: 418 KALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLV 476

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D  CK G +     L +E    G +P V TY+AL+ GL      + A +L   +++   V
Sbjct: 477 DAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWV 536

Query: 413 PDDITYNIL 421
           PDD T  +L
Sbjct: 537 PDDKTLGLL 545



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%)

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A  +  EM      PD  T+ ILL G C+   LE A  +   M + G   D+  + ALI
Sbjct: 25  KASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALI 84

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           SG+ +     +A + L EM+K    P   TYT ++D  CK   T+   +LL EMR  G  
Sbjct: 85  SGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCS 144

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P + TYN ++ GLC+  +L  A  +L+ M   G  PD +TYN  ++G CK    ++  K 
Sbjct: 145 PNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKF 204

Query: 438 QSEKGLVSDYACYTSLVS 455
            +   +  D   YT++++
Sbjct: 205 LARMPVTPDVVSYTTVIN 222



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           L ++D G+ P    +  L+  +CK GK   A  +F+E  K G     V+++ LI G    
Sbjct: 458 LTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHE 517

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
              +E + L + +      PD  T   L   L   N+   AE++
Sbjct: 518 NMAEEAYLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKAEVV 561


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 209/393 (53%), Gaps = 15/393 (3%)

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           +A+Q    LRK         C   I +++ +N   ++L F   ++  GY+P    FN ++
Sbjct: 4   EALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSVV 63

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL-DEGFRLKSVMEGSGM 195
             +CK G++K A+ +     + G     +S+N+LI+GHC+  ++      L+S+    G 
Sbjct: 64  SFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGF 123

Query: 196 --RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
             +PD+ ++++L NG  K   LD+  + +  M  +  +PN V ++T ID  CK+G + +A
Sbjct: 124 ICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVML-KCCSPNVVTYSTWIDTFCKSGELQLA 182

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
                  K    M  + L+P+ +T+T L+DG+CK GDLE A+ + KEM +  + L+ V +
Sbjct: 183 ------LKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTY 236

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           TALI GFC+ G++  AE M   M++  ++P+   YT +ID F + GD+    + L +M +
Sbjct: 237 TALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLN 296

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G    +  Y  +++GLC +G+LK A  +++ M    +VPD + +  ++  + K G  + 
Sbjct: 297 QGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKA 356

Query: 434 ----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
               + KL  E+G   D    ++++   +K  Q
Sbjct: 357 AVNMYHKL-IERGFEPDVVALSTMIDGIAKNGQ 388



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 170/364 (46%), Gaps = 59/364 (16%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V  ++  +   CK G+++ A   F    +  L    V+F  LI+G+CKA +L+    
Sbjct: 160 SPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVS 219

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M    M  +V TY+ALI+G CK+  +  AE +   M E  + PN +++TT+IDG  
Sbjct: 220 LYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFF 279

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           + G  D A                             G +KEA +IV++M  + L PD +
Sbjct: 280 QRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMV 339

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA------------------------ 312
            +T +++ + K G +++A+++  ++I+RG E D VA                        
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIE 399

Query: 313 ------FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
                 +T LI   C+ G  +E ER+  ++ + GL PD   YT  I   CK G+    F+
Sbjct: 400 KANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFK 459

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L   M  +G L  +  Y  L+ GL   G +  A  + D ML+ G+ PD   +++L+  + 
Sbjct: 460 LKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYE 519

Query: 427 KHGN 430
           K GN
Sbjct: 520 KEGN 523



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 11/269 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F  ++L+ G    +  + V++  LC  GK+K+A  + ++  K  L    V F T++N
Sbjct: 287 AMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMN 346

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
            + K+  +     +   +   G  PDV   S +I+G+ K  +L +A  +++   E+    
Sbjct: 347 AYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEA--IVYFCIEKA--- 401

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           NDV++T LID  CK G      D  E  ++  ++   GL PDK  YT  + G CK+G+L 
Sbjct: 402 NDVMYTVLIDALCKEG------DFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLV 455

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  ++  M++ G+ LD +A+T LI G    G +VEA ++  EML  G+ PD A + ++I
Sbjct: 456 DAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLI 515

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             + K G+      LL +M+  G + AV 
Sbjct: 516 RAYEKEGNMAAASDLLLDMQRRGLVTAVS 544


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/272 (37%), Positives = 156/272 (57%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G  P+ + +  L++  CK G+++ A+M+  +   RG+    + FNT+I+G+C+  
Sbjct: 273 ECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKN 332

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+   +K +ME  G+  DVYTY+ L  GL + NR+D+A+ LL  M E+G+ PN V +T
Sbjct: 333 MVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYT 392

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  HC  G      DM EAR++  EM  NG  P  +TY +++DG+ K+G +  A   +
Sbjct: 393 TLISIHCNEG------DMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 446

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM K+G+  D  ++ AL+ G C  GKV  A R+  EM + G KP+   YT +I    K 
Sbjct: 447 KEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKE 506

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L   M  DG  P    Y+AL+  L
Sbjct: 507 GRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 196/409 (47%), Gaps = 33/409 (8%)

Query: 47  ASILETRGTHLPGLV--LDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A +L+   T  P  V  L A ++V  Y   G +  A Q    + +H  ++ A     L+D
Sbjct: 127 ADLLKQAATSCPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLD 186

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              R             + + G  P+V  + +L+  L     I   + VF+E   + L  
Sbjct: 187 AYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSG 246

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
               ++++IN +C+A N+     +     G+G+ P+ +TY ALING CK  +++ AE+L+
Sbjct: 247 DVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLV 306

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK------------------------- 257
            +M  RG+  N ++F T+IDG+C+   +D A ++K                         
Sbjct: 307 TDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRA 366

Query: 258 ----EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA+ ++  M   G+ P+ ++YT L+   C EGD+  A  + +EM   G E   V +
Sbjct: 367 NRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTY 426

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G+ + G + EAER  +EM K GL PD  +Y  ++   C NG      RL +EM+ 
Sbjct: 427 NVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQ 486

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            G  P +  Y AL++GL K G+ + A  L D ML  G+ PDD  Y+ L+
Sbjct: 487 RGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 535



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 186/365 (50%), Gaps = 44/365 (12%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           +V++   CK G++  A+ + DE  + G+   A+ +N+L++ + + K+ D    +  VME 
Sbjct: 147 SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 206

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P V TY+ L++GL     +   E +  EM  + L+ +   ++++I+ +C+      
Sbjct: 207 EGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCR------ 260

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           AG+++ A ++ DE   NG+ P++ TY  L++GFCK G +E+A  +  +M  RG+ ++ + 
Sbjct: 261 AGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIV 320

Query: 313 FTALISGFCR-----------------------------------GGKVVEAERMLREML 337
           F  +I G+CR                                     ++ EA+ +LR M+
Sbjct: 321 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 380

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G++P+  +YT +I   C  GD     RL +EM  +G  P++ TYN +M+G  K G ++
Sbjct: 381 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 440

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            A      M   G+VPD  +Y  L+ GHC +G  +   +L  E   +G   +   YT+L+
Sbjct: 441 EAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 500

Query: 455 SKSSK 459
           S  +K
Sbjct: 501 SGLAK 505



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 11/216 (5%)

Query: 215 LDDAELLLHEM---CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           LD A  LL +    C   +TP  +  + ++DG+CK+GR+        AR+++DEM  +G+
Sbjct: 123 LDTAADLLKQAATSCPDSVTP--LSASVVVDGYCKSGRV------AHARQLLDEMPRHGV 174

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             + + Y  LLD + +E D +   ++ K M   GIE     +T L+ G      + + E 
Sbjct: 175 KVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEA 234

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EM    L  D   Y+ VI+ +C+ G+ +    +  E   +G  P   TY AL+NG C
Sbjct: 235 VFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFC 294

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           K GQ++ A ML+  M   GV  + I +N +++G+C+
Sbjct: 295 KIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 330



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+   G  P +Y +  L+H  C  GK+  A  +F+E  +RG     V++  LI+G  
Sbjct: 445 FKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 504

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           K    +E F+L   M G G+ PD   YSAL+  L
Sbjct: 505 KEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 203/396 (51%), Gaps = 23/396 (5%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEIL 121
           Y   G L  A + F L+       P RGC         L+  ++   +    +  ++ + 
Sbjct: 117 YCRAGMLTHACRVFVLM-------PLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMR 169

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
               +P  +V+  ++H LC+ G+ ++A+++ +E    G     V +N LI+G+C A  ++
Sbjct: 170 ADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEME 229

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
              ++   M+G+   P+V TY+ LI+GLCK  +++ A +L   M E GL PN V +T LI
Sbjct: 230 HALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C  G +  A       +++  M TNGL P+  T+++L+D  CK   +E A      +
Sbjct: 290 QGQCNEGHLQCA------FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSL 343

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +K+G++++ V +T+LI G C+ GK+  A+ ++++M+  G  PD  +Y+ +ID  C+    
Sbjct: 344 VKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKL 403

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                +L++M   G   +  TY  +++ L +    +    + D M+  G+ PD +TY + 
Sbjct: 404 SQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVF 463

Query: 422 LEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +  +C+ G  ED + +     ++G+  +   Y +L+
Sbjct: 464 VRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLI 499



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 168/297 (56%), Gaps = 6/297 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V  +  L+H LCK GK++ A ++F    + GL    V++  LI G C   +L   FR
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L  +ME +G+ P+ +T+S LI+ LCK  ++++A+L L  + ++G+  N+V++T+LIDG C
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLC 363

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G+ID A ++ +      +M + G  PD  +Y+ L+DG C++  L  A  + ++M+++G
Sbjct: 364 KTGKIDAADELMQ------KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+   V +T +I    R       +++  +M+  G+ PD  TYT+ +  +C+ G  +   
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            ++ +M   G  P + TYN L+ G    G +  A    + M+  G  P++ +Y +LL
Sbjct: 478 SMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 169/306 (55%), Gaps = 6/306 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P++ V+N L+   C  G+++ A  VF+            ++  LI+G CK+  ++  
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S M  +G+ P+V TY+ALI G C E  L  A  LLH M   GL PND  F+ LID 
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDA 326

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK  +++      EA+  +  +   G+  +++ YT L+DG CK G +++A ++ ++MI 
Sbjct: 327 LCKREKVE------EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G   D  ++++LI G CR  K+ +A  ML +M++ G++    TYT++ID   +   ++ 
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEG 440

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++  +M + G  P + TY   +   C+ G++++A  ++  M+D GV P+ +TYN L+ 
Sbjct: 441 PKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIR 500

Query: 424 GHCKHG 429
           G+   G
Sbjct: 501 GYANLG 506



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 196/407 (48%), Gaps = 51/407 (12%)

Query: 91  RIPARGCRC---LIDRM-MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
           R+PAR  R    LI+   +  ++P         +L  G +P  Y +   +   C+ G + 
Sbjct: 66  RMPARNLRTYTTLINAYCLAGDIPAAKQHL-TSLLHAGLAPDSYAYTSFVLGYCRAGMLT 124

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
            A  VF     RG   TA ++  L++G   A  + E   +   M      PD + Y+ ++
Sbjct: 125 HACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMV 184

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +GLC+  R ++AE+LL E    G  PN V++  LIDG+C       AG+M+ A K+ + M
Sbjct: 185 HGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCN------AGEMEHALKVFEGM 238

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG-- 324
             N  +P+  TYT L+ G CK G +E A+ +   M++ G+E + V +TALI G C  G  
Sbjct: 239 DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298

Query: 325 ---------------------------------KVVEAERMLREMLKVGLKPDDATYTMV 351
                                            KV EA+  L  ++K G+K ++  YT +
Sbjct: 299 QCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSL 358

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID  CK G       L+++M S+G +P   +Y++L++GLC+  +L  A ++L+ M++ G+
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 412 VPDDITYNILLEGHCK----HGNPEDFDKLQSEKGLVSDYACYTSLV 454
               +TY I+++   +     G  + FDK+ +  G+  D   YT  V
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIA-TGINPDIVTYTVFV 464



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 162/312 (51%), Gaps = 14/312 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + F+VL+  LCK  K+++AQ+      K+G+    V + +LI+G CK   +D  
Sbjct: 312 GLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAA 371

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G  PD ++YS+LI+GLC++ +L  A L+L +M E+G+  + V +T +ID 
Sbjct: 372 DELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDE 431

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +   +   G     +KI D+M   G+NPD +TYT+ +  +C+EG +E A  +  +M+ 
Sbjct: 432 LVR--EVGSEG----PKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVD 485

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+  + V +  LI G+   G V +A      M+  G KP++ +YT+++    K   +  
Sbjct: 486 RGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDN 545

Query: 364 GFRL-----LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +     +K+++   +   V  +  L+ GL + G +   + LL  M + G  P + T 
Sbjct: 546 SVDIWKIADMKDLQESNYDEIV--WKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSN-TI 602

Query: 419 NILLEGHCKHGN 430
           N ++ G     N
Sbjct: 603 NAMITGEITVTN 614



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V+  S   P +   + L+  L +     D E L   M  R L      +TTLI+ +C   
Sbjct: 31  VLSPSAPLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLR----TYTTLINAYC--- 83

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
              +AGD+  A++ +  +   GL PD   YT  + G+C+ G L  A  +   M  RG   
Sbjct: 84  ---LAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLR 140

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               +TAL+ G    G V EA  +   M      PD   Y  ++   C+ G T+    LL
Sbjct: 141 TAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLL 200

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +E  S+G  P +  YNAL++G C  G++++A  + + M      P+  TY  L+ G CK 
Sbjct: 201 EEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKS 260

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           G  E    L S   E GL  +   YT+L+ 
Sbjct: 261 GKVERAMVLFSRMVEAGLEPNVVTYTALIQ 290



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 117/277 (42%), Gaps = 4/277 (1%)

Query: 43  ASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A LF   L  +G  +  +V  +L+      G +D A +  + +    F   A     LID
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
            + R    +       ++++ G   S   + +++ +L +E   +  + +FD+    G++ 
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINP 455

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             V++   +  +C+   +++   +   M   G+ P++ TY+ LI G      +  A    
Sbjct: 456 DIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTF 515

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
             M  +G  PN+  +T L+    K    D + D+    KI D       N D+I + IL+
Sbjct: 516 EVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDI---WKIADMKDLQESNYDEIVWKILI 572

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            G  ++G +     +   M + G +  N    A+I+G
Sbjct: 573 YGLLQKGSVAEFSSLLSVMKEHGYQPSN-TINAMITG 608


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 201/419 (47%), Gaps = 23/419 (5%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T+HA++ ++  LV                   G    A L    L  +G  L     + L
Sbjct: 64  TVHAFTKLIDILV-----------------NSGEFERAELVYKKLVQKGCQLDRFAYNVL 106

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +  +   G LD A++ FR ++             L++ + +         F+  +L+ G 
Sbjct: 107 IRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGL 166

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P++  +N+LM    K G++  A  +F E  +RG   + V++N L++  C A  +    +
Sbjct: 167 TPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARK 226

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M G G  PD YTYS L+NGL K  R+++A  +  EM +RG+  + V + +L+    
Sbjct: 227 LFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLA 286

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K      AG+M    K++ EM   G +PD  ++  ++D   K    ++A ++   M++ G
Sbjct: 287 K------AGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESG 340

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            + D +++  LI  + R G   +A +ML EM++ G  P+  TY  +I     +G     F
Sbjct: 341 CKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAF 400

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +L+EM + G  P V TYN LM+ L K G+ + A  L   M D GV PD ++Y + ++G
Sbjct: 401 AVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDG 459



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 184/373 (49%), Gaps = 16/373 (4%)

Query: 89  YFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
           Y ++  +GC+        LI    R+      +  + E+   G  P  Y +  L++ L K
Sbjct: 88  YKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGK 147

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
            G++++A+  FD   +RGL     ++N L++   K   LD    L + M+  G +P V T
Sbjct: 148 AGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVT 207

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ L++ LC   R+  A  L H+M   G +P+   ++TL++G  K+GR++      EA K
Sbjct: 208 YNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVE------EAHK 261

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           +  EM   G+  D + Y  LL    K G+++    + KEM ++G   D  +F  ++    
Sbjct: 262 VFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALG 321

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           +  K   A  +   M++ G KPD  +Y ++ID + + GD     ++L+EM   G +P  +
Sbjct: 322 KANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETK 381

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---Q 438
           TYN+L++ L   GQ+  A  +L+ M   G  PD +TYN L++   K G  +   +L    
Sbjct: 382 TYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQM 441

Query: 439 SEKGLVSDYACYT 451
            +KG+  D   Y 
Sbjct: 442 KDKGVEPDTLSYA 454



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 172/358 (48%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI    R N        + +   +  SP+V+ F  L+  L   G+ + A++V+ +  ++G
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++N LI    ++  LD    +   M+  G  PD YTY  L+N L K  R+ +A 
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
                M ERGLTPN   +  L+D   K G++DM      A  +  EM   G  P  +TY 
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDM------ALGLFAEMKRRGFQPSVVTYN 209

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           ILLD  C  G + +A  +  +M   G   D+  ++ L++G  + G+V EA ++ REM+  
Sbjct: 210 ILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDR 269

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+  D   Y  ++    K G+    ++L+KEM   G  P   ++N +M+ L K  +   A
Sbjct: 270 GVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAA 329

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             +   M++ G  PD I+YNIL++ + + G+     ++     E G + +   Y SL+
Sbjct: 330 REVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLI 387



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 132/274 (48%), Gaps = 11/274 (4%)

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V EG  +RP+  T   LI    + N+  DA  L ++      +P    FT LID      
Sbjct: 22  VAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVN-- 77

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
               +G+ + A  +  ++   G   D+  Y +L+  F + G L+SA+++ +EM  +G E 
Sbjct: 78  ----SGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEP 133

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D   +  L++   + G+V EA      ML+ GL P+  TY +++D F K G       L 
Sbjct: 134 DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLF 193

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM+  G  P+V TYN L++ LC  G++  A  L   M   G  PD  TY+ L+ G  K 
Sbjct: 194 AEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKS 253

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           G  E+  K+  E   +G+  D   Y SL++  +K
Sbjct: 254 GRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAK 287



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 35/167 (20%)

Query: 299 KEMIKRGIELDNVAFTALISGFCRG----------------------------------- 323
           KEM+  G  L       LI+ + RG                                   
Sbjct: 19  KEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNS 78

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+   AE + +++++ G + D   Y ++I  F ++G   +   + +EM+  G  P   TY
Sbjct: 79  GEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTY 138

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             L+N L K G+++ A    D ML+ G+ P+  TYN+L++   K G 
Sbjct: 139 GFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185



 Score = 38.5 bits (88), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 330 ERMLREMLKVG--LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           E +L+EM+  G  L+P+  T   +I  + +   +   F L  +  S    P V  +  L+
Sbjct: 15  ETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLI 72

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
           + L   G+ + A ++   ++  G   D   YN+L+    + G  +   ++  E   KG  
Sbjct: 73  DILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSE 132

Query: 445 SDYACYTSLVS---KSSKYRQKR 464
            D   Y  LV+   K+ + ++ R
Sbjct: 133 PDEYTYGFLVNALGKAGRVQEAR 155


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/507 (28%), Positives = 234/507 (46%), Gaps = 64/507 (12%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRGTHLPG--L 60
           R+T H Y   VH LV  +M SQA  +L HL ++  G   SA +F+S+L T     P    
Sbjct: 106 RIT-HIYCMAVHILVQAQMPSQAMSVLRHLALT--GFSCSA-IFSSLLRTISRCDPTNLF 161

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
            +D L+  YV  G + DA      + +  F+     C  +++ ++  N       F  E 
Sbjct: 162 SVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKES 221

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD  +   V   N++++ LC +GK+  A+ +  +  K      AV++NT++N + K    
Sbjct: 222 LDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKM-KNCRLPNAVTYNTILNWYVKKGRC 280

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND------ 234
               R+   ME +G+  D+YTY+ +I+ LCK  R   A LLL  M E  LTP++      
Sbjct: 281 KSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTL 340

Query: 235 -----------------------------VIFTTLIDGHCKNGRIDMA------------ 253
                                          +T LIDG+C+NGR D A            
Sbjct: 341 IHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGV 400

Query: 254 --GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
              ++ +A++I+  M  +G++PD ITY+ L++    EG +  A   ++ M +  I  D  
Sbjct: 401 RPREVSKAKQILKCMLADGIDPDVITYSALIN----EGMIAEAEQFKQYMSRMKISFDVA 456

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           +F  +I  +C+ G V+EA  +   M++ G  PD  TY  ++   C+ G        +  +
Sbjct: 457 SFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYL 516

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                    +T N L+ G+CKHG L  A  L + M+   ++PD  TY ILL+G CK G  
Sbjct: 517 LEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKV 576

Query: 432 ED---FDKLQSEKGLVSDYACYTSLVS 455
                  ++  EKGLV D   YT L++
Sbjct: 577 VPALILLQMMLEKGLVPDTIAYTCLLN 603



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 194/429 (45%), Gaps = 36/429 (8%)

Query: 62  LDALMIVY---VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           +D  +I Y   ++ G + +A Q  + + +           C+ID   +          Y 
Sbjct: 420 IDPDVITYSALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYD 479

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            ++ +G+ P +  +  L+  LC+ G +  A+       ++       + NTL+ G CK  
Sbjct: 480 NMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHG 539

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LDE   L   M    + PD YTY+ L++G CK  ++  A +LL  M E+GL P+ + +T
Sbjct: 540 TLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYT 599

Query: 239 TLIDGHCKNGRIDMA------------------------------GDMKEARKIVDEMCT 268
            L++G    G++  A                              G + E  +++  M  
Sbjct: 600 CLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHE 659

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           N + P   +Y IL+ G+ K+G L   L + ++M+K GI+ DNV +  LI G C  G +  
Sbjct: 660 NEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEI 719

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A + L +M+  G+ PD+  + ++I  F +        +L   M+     P+ +TY A++N
Sbjct: 720 AVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVN 779

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVS 445
           GL +   L+ +  +L  M++ G+ P    Y  L+   C+ G+ +   +L+ +    G+V 
Sbjct: 780 GLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVP 839

Query: 446 DYACYTSLV 454
                +S+V
Sbjct: 840 SEVAESSIV 848



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 187/386 (48%), Gaps = 6/386 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL+ +V++  + +++ +F  I+   G +   +  +++M  Y+  G +++  +  R + ++
Sbjct: 601 LLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHEN 660

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                +     L+   ++    + TL  Y +++  G  P    + +L+  LC+ G I+ A
Sbjct: 661 EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIA 720

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
               ++    G+    ++F+ LI    +   +    +L S M+   M P   TY A++NG
Sbjct: 721 VKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNG 780

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           L ++N L  +  +LH+M E GL P    +  LI+  C+ G ID A ++KE  K +     
Sbjct: 781 LIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKAL----- 835

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G+ P ++  + ++ G CK G +E A+ +   +++ G+      FT L+ G C+  K+ +
Sbjct: 836 -GVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDD 894

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  + + M   GLK D  TY ++I   C          L +EM+S G LP + TY  L  
Sbjct: 895 AFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTG 954

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPD 414
            +   G +++   LL  + D G+VP 
Sbjct: 955 AMYATGTMQDGEKLLKDIEDRGIVPS 980



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 177/396 (44%), Gaps = 68/396 (17%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAK 178
           +L+ G  P    +  L++ L  EG++K A  +F E   K GL+A  +++N+++NG+ K  
Sbjct: 586 MLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGG 645

Query: 179 NLDEGFRL----------------KSVMEG-------------------SGMRPDVYTYS 203
            ++E  RL                  +M G                    G++PD  TY 
Sbjct: 646 QINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYR 705

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
            LI GLC+   ++ A   L +M   G+ P+++ F  LI    +  ++  A          
Sbjct: 706 LLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWL 765

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                                ++++ +I+ +M  +GL P    Y  L++  C+ GD++ A
Sbjct: 766 HMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGA 825

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            +++++M   G+    VA ++++ G C+ GKV EA  +   +++ G+ P  AT+T ++  
Sbjct: 826 FELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHG 885

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK       F L + M S G    V TYN L+ GLC    + +A  L + M   G++P+
Sbjct: 886 LCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPN 945

Query: 415 DITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDY 447
             TY  L       G  +D +KL     ++G+V  Y
Sbjct: 946 ITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSY 981


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 228/476 (47%), Gaps = 45/476 (9%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS--KKGMGSSASLFASILETRG---- 54
           P+F+  + +Y++++  +  HK+ S   D+  +IVS  K    +  +LF S +  +     
Sbjct: 95  PNFKHNVDSYASLLTLIDHHKIVS---DVPKIIVSMIKCCYSAPDALFVSDICRKMSKDD 151

Query: 55  -THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
            T L     + L+ +    G +D+  Q +  + + +  +       +I+   +       
Sbjct: 152 ITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEA 211

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
             F  +++  G SP  +     +   C+   +  A  VF+E   R      VS+N LI+G
Sbjct: 212 KQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRN----EVSYNQLIHG 267

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+A  +DE   L   M+     P+VYTY+ALI GLC++N +  A  LL EM ER L P+
Sbjct: 268 LCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPD 326

Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
            + + +LI G C+ G +D A                               ++EAR++ D
Sbjct: 327 LITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFD 386

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
            +   G++ + I Y++L+DG+CK G ++ A  + ++M+ +    +   F ALI G C  G
Sbjct: 387 SLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAG 446

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            + EA  +  +M+K+GLKP   T+ ++I    K GD     + L++M S G  P   TYN
Sbjct: 447 NLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYN 506

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG-NPEDFDKLQS 439
           A +   C  G+++ A  ++  M + GV PDD TY  L++ + K G     FD L+S
Sbjct: 507 AFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKS 562



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 163/368 (44%), Gaps = 71/368 (19%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+VY +  L+  LC++  +  A  + DE  +R L    +++N+LI G C+A +LD  +RL
Sbjct: 291 PNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRL 349

Query: 187 KSVMEGSGMRPD-----------------------------------VYTYSALINGLCK 211
            S+M+  G+ PD                                   V  YS LI+G CK
Sbjct: 350 LSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCK 409

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
             ++D+A  L  +M  +  +PN   F  LI G C       AG++KEA  + D+M   GL
Sbjct: 410 VGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCS------AGNLKEALSLFDQMVKMGL 463

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P   T+ IL+    K+GD + A    ++M+  G +     + A I  +C  GKV EAE 
Sbjct: 464 KPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAED 523

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL- 390
           M+ +M + G+ PDD TYT +I  + K G T + F +LK M      P+  T+ +L+  L 
Sbjct: 524 MMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLF 583

Query: 391 -----------------CKHGQLKNANM-----------LLDTMLDLGVVPDDITYNILL 422
                               G +  +NM           L + M   G  PD   Y  L+
Sbjct: 584 DKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLI 643

Query: 423 EGHCKHGN 430
            G CK  N
Sbjct: 644 SGICKVEN 651



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++L    SP+ Y FN L+H LC  G +K+A  +FD+  K GL  T  +FN LI    
Sbjct: 419 LFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRML 478

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  + D+  +    M  SG +P   TY+A I   C   ++ +AE ++ +M E G+ P+D 
Sbjct: 479 KQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDF 538

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEA-----------------------RKIVDEMCTNGLN 272
            +T+LI  + K G    A D+ ++                       R +V++    G+ 
Sbjct: 539 TYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVE 598

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
                  +      K  + +  +++ +EM K G   D+  +  LISG C+   +  A ++
Sbjct: 599 SVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKL 658

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L +M K G+ P +  +  VI C CK         ++++M   GH P +E    L+ GL +
Sbjct: 659 LDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYE 718

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            G+ +  N +   +   G   D+I + IL++G  K G  E+F +L  E
Sbjct: 719 EGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEE 766



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 167/379 (44%), Gaps = 22/379 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G LD A +   L+++       R   C ID + ++N        +  + + G S +V ++
Sbjct: 341 GHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMY 400

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           +VL+   CK GK+ +A  +F++   +     A +FN LI+G C A NL E   L   M  
Sbjct: 401 SVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVK 460

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G++P VYT++ LI  + K+   DDA   L +M   G  P    +   I+ +C       
Sbjct: 461 MGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCS------ 514

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           AG ++EA  ++ +M   G+ PD  TYT L+  + K G   SA D+ K M     E  +  
Sbjct: 515 AGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHT 574

Query: 313 FTALISGFCRGGKVVE--AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           F +LI        VVE   E  +  +   G  P    + M+        +      L +E
Sbjct: 575 FLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMM--------EFDIVIELFEE 626

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P  + Y  L++G+CK   L  A  LLD M   G+ P ++ +N ++   CK   
Sbjct: 627 MEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCK--- 683

Query: 431 PEDFDKLQSEKGLVSDYAC 449
                K      +V D  C
Sbjct: 684 ---LQKYGEAANIVEDMIC 699



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 38/224 (16%)

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  LL    + G ++    +  EM++  + +D   F  +I+ +C+ G V EA++ + +M+
Sbjct: 160 YNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMI 219

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE--------------------------- 370
           + GL PD  T T  I  +C++ D  + FR+ +E                           
Sbjct: 220 QAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVS 279

Query: 371 ----MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
               M+ D   P V TY AL+ GLC+   +  A  LLD ML+  +VPD ITYN L+ G C
Sbjct: 280 LFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQC 338

Query: 427 KHGNPEDFDKLQS---EKGLVSD---YACYTSLVSKSSKYRQKR 464
           + G+ +   +L S   E+GLV D   Y C+   + KS++  + R
Sbjct: 339 RAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEAR 382


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P    +N L+   CK G+I+  + +FDE  K G+    V+ NTL+ G C+   +   
Sbjct: 414 GCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSA 473

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                  +  GM+ D  TY+ALIN  C  N  + A  L +EM + G +P+ +++ TLI G
Sbjct: 474 VNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISG 533

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + GR      M +A  ++ E+   G+ PD + Y  L+ GFC+        ++ KEM +
Sbjct: 534 FSQAGR------MADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEE 587

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ D + +  LI+   + G +  A++++R+M+K G+ P  ATY  VI+ +C NG+   
Sbjct: 588 AGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNE 647

Query: 364 GFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              + K+M++   +P     YN L+N LCK+ ++K+A  L++ M   GV P+  TYN + 
Sbjct: 648 AMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIF 707

Query: 423 EG 424
           +G
Sbjct: 708 KG 709



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 179/351 (50%), Gaps = 21/351 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF--GKRG------LHATAVSFNTL 170
           ++++    P+V  F +L++ +CK  ++ DA  V ++   GK        +    V +NTL
Sbjct: 330 KMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTL 389

Query: 171 INGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           I+G CK     EG  L   M    G  PD  TY+ LI+G CK   ++  + L  EM + G
Sbjct: 390 IDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEG 449

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDM-KEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           + PN V   TL+ G C+ GR+  A +   EA++        G+  D +TYT L++ FC  
Sbjct: 450 VAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR-------RGMKGDAVTYTALINAFCNV 502

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
            + E A+++  EM+K G   D + +  LISGF + G++ +A  +L E+ K+G++PD   Y
Sbjct: 503 NNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCY 562

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +I  FC+       F +LKEM   G  P   TYN L+    K+G LK A  ++  M+ 
Sbjct: 563 NTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIK 622

Query: 409 LGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVS 455
            GVVP   TY  ++  +C +GN     E F  +++   +  +   Y  L++
Sbjct: 623 AGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILIN 673



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 162/340 (47%), Gaps = 7/340 (2%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLID   +          + E+   G +P+V   N L+  +C+ G++  A   F E  +R
Sbjct: 424 CLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRR 483

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+   AV++  LIN  C   N ++   L + M  SG  PD   Y  LI+G  +  R+ DA
Sbjct: 484 GMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADA 543

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             +L E+ + G+ P+ V + TLI G C+  +     +M      + EM   GL PD ITY
Sbjct: 544 SFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEM------LKEMEEAGLKPDTITY 597

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+    K GDL+ A  + ++MIK G+      + A+I+ +C  G   EA  + ++M  
Sbjct: 598 NTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKA 657

Query: 339 VG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
              + P+   Y ++I+  CKN   K+   L+++M+  G  P   TYNA+  GL     L+
Sbjct: 658 ASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLE 717

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
                +D M++    PD IT  IL E     G  E   K 
Sbjct: 718 KVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKF 757



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 177/358 (49%), Gaps = 18/358 (5%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +   L+  ++G   S +    L+ +LC+  K      +F E  K G    + + N+L+ G
Sbjct: 255 VNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTG 314

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC---ERG- 229
             +  N +    L   M    ++P+V T+  LIN +CK  R+DDA  +L +M    E G 
Sbjct: 315 LAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGG 374

Query: 230 ----LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDG 284
               + P+ VI+ TLIDG CK GR       +E   +++ M    G  PD ITY  L+DG
Sbjct: 375 ISVSVEPDVVIYNTLIDGLCKVGR------QQEGLGLMERMRSQKGCAPDTITYNCLIDG 428

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           FCK G++E   ++  EM K G+  + V    L+ G CR G+V  A     E  + G+K D
Sbjct: 429 FCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGD 488

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TYT +I+ FC   + +    L  EM   G  P    Y  L++G  + G++ +A+ +L 
Sbjct: 489 AVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLA 548

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYTSLVSKSSK 459
            +  LG+ PD + YN L+ G C+       F+ L+   E GL  D   Y +L++ +SK
Sbjct: 549 ELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASK 606



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 13/292 (4%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +  A+  F   ++   +  A     LI+     N     +  + E+L  G SP   V+
Sbjct: 468 GRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVY 527

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L+    + G++ DA  V  E  K G+    V +NTLI G C+       F +   ME 
Sbjct: 528 YTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEE 587

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR--- 249
           +G++PD  TY+ LI    K   L  A+ ++ +M + G+ P    +  +I+ +C NG    
Sbjct: 588 AGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNE 647

Query: 250 -IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            +++  DMK A K+          P+ + Y IL++  CK   ++SA+ + ++M   G+  
Sbjct: 648 AMEIFKDMKAASKVP---------PNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTP 698

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +   + A+  G      + +    +  M++    PD  T  ++ +     G+
Sbjct: 699 NTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGE 750


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 173/335 (51%), Gaps = 9/335 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           Y  SP+V  +N ++    KEG++  A  +F E   +GL    V++N+LI+G CKA+ +D+
Sbjct: 194 YNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDK 253

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              +   M   G+ PD  TY+ +I G C   +L++A  LL +M   GL P+ V ++ LI 
Sbjct: 254 AVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQ 313

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
            +CK GR        EAR + D M   G  P+   Y ILL G+  +G L    D+   MI
Sbjct: 314 YYCKIGRC------AEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMI 367

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + GI  ++ AF  LI  + + G V +A     EM + GL+PD  +Y+ VI   CK G  +
Sbjct: 368 RDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVE 427

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
                  +M S+G  P + ++ +L++GLC  G+ K    L   M++ G+ PD I  N ++
Sbjct: 428 DAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIM 487

Query: 423 EGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           +  CK G     +DF  +    G+  D   Y +L+
Sbjct: 488 DNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLI 522



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 167/321 (52%), Gaps = 6/321 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+   G  P V  ++ ++H LCK G+++DA   F++    GL    +SF +LI+G C 
Sbjct: 398 FTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCS 457

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
                +   L   M   G+ PD    + +++ LCKE R+ +A+     +   G+ P+ V 
Sbjct: 458 IGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVS 517

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + TLIDG+C        G M E+ K +D M + GL PD  TY  LL+G+ K G +E AL 
Sbjct: 518 YNTLIDGYC------FVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALA 571

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM ++ ++   +    ++ G  + G++V A  +  +M+  G +    TY  V+   C
Sbjct: 572 LYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLC 631

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +N       R+ +++RS      V T++ ++N L K G++  A  L   M+  G VPD I
Sbjct: 632 ENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVI 691

Query: 417 TYNILLEGHCKHGNPEDFDKL 437
           TY+++++ H + G  E+ D L
Sbjct: 692 TYSLMIKSHIEEGLLEESDNL 712



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 164/354 (46%), Gaps = 29/354 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E++  G  P V  +N L+  LCK   +  A  +      +G+     ++N +I G+C
Sbjct: 222 LFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYC 281

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               L+E  RL   M GSG++PDV TYS LI   CK  R  +A  +   M  +G  PN  
Sbjct: 282 SLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNST 341

Query: 236 IFTTLIDGHCKNGR-IDMA----------------------------GDMKEARKIVDEM 266
           I+  L+ G+   G  ID+                             G + +A     EM
Sbjct: 342 IYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEM 401

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
             NGL PD ++Y+ ++   CK G +E A+    +M+  G+  + ++FT+LI G C  G+ 
Sbjct: 402 RQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEW 461

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            + E +  EM+  G+ PD      ++D  CK G           +   G  P V +YN L
Sbjct: 462 KKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTL 521

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           ++G C  G++  +   LD M+ +G+ PD  TYN LL G+ K+G  ED   L  E
Sbjct: 522 IDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYRE 575



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 168/332 (50%), Gaps = 15/332 (4%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK-SV 189
           +  +L+   C  G++  A   F  F K G     V+ N LI G C     D+   +    
Sbjct: 93  IIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRR 152

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGL--TPNDVIFTTLIDGHCK 246
           M   G  PDV++Y+ALI GLC E +  +A ELL+H   + G   +PN V + T+IDG  K
Sbjct: 153 MPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFK 212

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G +D      +A  +  EM   GL PD +TY  L+DG CK   ++ A+ I + M  +G+
Sbjct: 213 EGEVD------KAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGV 266

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +  +I G+C  G++ EA R+L++M   GL+PD  TY+++I  +CK G       
Sbjct: 267 MPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARS 326

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M   G  P    Y+ L++G    G L +   LLD M+  G+  +   +NIL+  + 
Sbjct: 327 VFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYA 386

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           KHG  +     F +++ + GL  D   Y++++
Sbjct: 387 KHGAVDKAMTAFTEMR-QNGLRPDVVSYSTVI 417



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 172/362 (47%), Gaps = 20/362 (5%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD-------AQMVFDEFGKRGLHATAV 165
            L  + E+L      SV+ FN ++  + +             A  +F+   + G++  A 
Sbjct: 33  ALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMMAA 92

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHE 224
               LI   C    LD  F   ++   +G R    T + LI GLC  NR DDA +++   
Sbjct: 93  IIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRR 152

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG---LNPDKITYTIL 281
           M E G TP+   +  LI G C   +       +EA +++  M  +G    +P+ ++Y  +
Sbjct: 153 MPELGYTPDVFSYNALIKGLCVEKK------SQEALELLIHMTADGGYNCSPNVVSYNTV 206

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DGF KEG+++ A  +  EM+ +G+  D V + +LI G C+   + +A  +L+ M   G+
Sbjct: 207 IDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGV 266

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD  TY ++I  +C  G  +   RLLK+M   G  P V TY+ L+   CK G+   A  
Sbjct: 267 MPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARS 326

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVSKSS 458
           + D+M+  G  P+   Y+ILL G+   G   +  D   L    G+  ++  +  L+   +
Sbjct: 327 VFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYA 386

Query: 459 KY 460
           K+
Sbjct: 387 KH 388



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 175/369 (47%), Gaps = 6/369 (1%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            + L+  Y   G +D A+  F  +R++  R        +I  + +T      +  + +++
Sbjct: 378 FNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMV 437

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G SP++  F  L+H LC  G+ K  + +  E   RG+H  A+  NT+++  CK   + 
Sbjct: 438 SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVV 497

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E      ++   G++PDV +Y+ LI+G C   ++D++   L  M   GL P+   + +L+
Sbjct: 498 EAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLL 557

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+ KNGR++      +A  +  EM    +    IT  I+L G  + G + +A ++  +M
Sbjct: 558 NGYFKNGRVE------DALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKM 611

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           + RG +L    +  ++ G C    V EA RM  ++     + D  T+++VI+   K G  
Sbjct: 612 VDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRI 671

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                L   M   G +P V TY+ ++    + G L+ ++ L  +M   G   D    NI+
Sbjct: 672 DEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNII 731

Query: 422 LEGHCKHGN 430
           +    + G+
Sbjct: 732 VRRLLEKGD 740



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 6/286 (2%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+++ G  P     N +M  LCKEG++ +AQ  FD     G+    VS+NTLI+G+C  
Sbjct: 469 FEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFV 528

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +DE  +    M   G+RPD +TY++L+NG  K  R++DA  L  EM  + +    +  
Sbjct: 529 GKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITS 588

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             ++ G  + GRI        AR++  +M   G      TY  +L G C+   ++ AL +
Sbjct: 589 NIMLHGLFQAGRI------VAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRM 642

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +++  +  ELD   F+ +I+   + G++ EA+ +   M+  G  PD  TY+++I    +
Sbjct: 643 FEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIE 702

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
            G  +    L   M  +G        N ++  L + G ++ A   L
Sbjct: 703 EGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYL 748



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 86/192 (44%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           ++L+  Y   G ++DA+  +R + +   +  A     ++  + +          Y++++D
Sbjct: 554 NSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVD 613

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G    +  +N ++  LC+   + +A  +F++   +       +F+ +IN   K   +DE
Sbjct: 614 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDE 673

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L S M   G  PDV TYS +I    +E  L++++ L   M + G   +  +   ++ 
Sbjct: 674 AKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVR 733

Query: 243 GHCKNGRIDMAG 254
              + G +  AG
Sbjct: 734 RLLEKGDVRRAG 745


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 176/361 (48%), Gaps = 46/361 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLD- 181
           G +P+ Y +  ++   CK G++ +A  VFDE   +G +   AV +N LI G+C    LD 
Sbjct: 216 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 275

Query: 182 ----------------------------------EGFRLKSVMEGSGMRPDVYTYSALIN 207
                                             E + L   M G G+  DV+TY+ LIN
Sbjct: 276 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILIN 335

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G CKE  +  A  +   M  RG+    V +T+LI    K G++      +E  K+ DE  
Sbjct: 336 GHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQV------QETDKLFDEAV 389

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G+ PD + Y  L++     G+++ A +I  EM K+ I  D+V +  L+ G C  G+V 
Sbjct: 390 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 449

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA +++ EM K G++PD  TY  +I  +   GD K   R+  EM + G  P + TYNAL+
Sbjct: 450 EARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALI 509

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDY 447
            GLCK+GQ  +A  ++  M++ G+ PDD TY  L+EG       ED   +  E+   +D 
Sbjct: 510 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTT----EDERAIDDERLAAADA 565

Query: 448 A 448
           A
Sbjct: 566 A 566



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 26/383 (6%)

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGF---------------YLEILDYGYSPSVYVFNVLM 136
           +P+     L   M R  LP  T  F                LE+L     P+   +N ++
Sbjct: 133 LPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 192

Query: 137 HKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG- 194
              C  G+++ A  +  E  +RG +     ++ T+I+G CK   +DE  ++   M   G 
Sbjct: 193 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 252

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           ++P+   Y+ALI G C + +LD A L    M ERG+      +  L+     +GR     
Sbjct: 253 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR----- 307

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA ++V+EM   GL  D  TY IL++G CKEG+++ AL+I + M +RG+    V +T
Sbjct: 308 -GTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 366

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           +LI    + G+V E +++  E ++ G++PD   Y  +I+    +G+    F ++ EM   
Sbjct: 367 SLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 426

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              P   TYN LM GLC  G++  A  L+D M   G+ PD +TYN L+ G+   G+ +D 
Sbjct: 427 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDA 486

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
            ++++E   KG       Y +L+
Sbjct: 487 LRIRNEMMNKGFNPTLLTYNALI 509



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 7/328 (2%)

Query: 69  YVDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +  +G +D+A++ F  +L K   +  A     LI            L +   +++ G + 
Sbjct: 231 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 290

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+L+H L  +G+  +A  + +E G +GL     ++N LINGHCK  N+ +   + 
Sbjct: 291 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIF 350

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+R  V TY++LI  L K+ ++ + + L  E   RG+ P+ V++  LI+ H  +
Sbjct: 351 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 410

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G ID       A +I+ EM    + PD +TY  L+ G C  G ++ A  +  EM KRGI+
Sbjct: 411 GNID------RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQ 464

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V +  LISG+   G V +A R+  EM+  G  P   TY  +I   CKNG       +
Sbjct: 465 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 524

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +KEM  +G  P   TY +L+ GL    +
Sbjct: 525 VKEMVENGITPDDSTYISLIEGLTTEDE 552


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 176/346 (50%), Gaps = 9/346 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  GY  +      +M  LC  G+++ A    D    +G     V++ TLING CK   
Sbjct: 139 VLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGL 198

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E F L   MEG  +RP+V  Y+ +++GLCK+  + +A  L  ++  RG+ P+   +T 
Sbjct: 199 TREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTC 258

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C        G  +E  +++ +M    +N +  TY IL+D  CK+G L  A D+R 
Sbjct: 259 LIHGFCG------LGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRN 312

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            MI+RG   D V F  L+SG+C    VVEA ++     + G+ PD  +Y ++I  +CKN 
Sbjct: 313 LMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNN 372

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  L  +M      P + TY++L++GLCK G++  A  L   + D G  P+ ITYN
Sbjct: 373 RIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYN 432

Query: 420 ILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           I+L+  CK        +   L  E+GL  + + Y  L++   K ++
Sbjct: 433 IMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKR 478



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V ++N+++  LCK+G + +A+ ++ +   RG+     ++  LI+G C      E  RL
Sbjct: 216 PNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRL 275

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M    +  +VYTY+ LI+ LCK+  L  A  + + M ERG  P+ V F TL+ G+C 
Sbjct: 276 LCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYC- 334

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                +  D+ EARK+ D     G+ PD  +Y IL+ G+CK   ++ AL +  +M  + +
Sbjct: 335 -----LYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKL 389

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V +++LI G C+ G++  A  +   +   G  P+  TY +++D  CK         
Sbjct: 390 APNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIE 449

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L   M   G  P V +YN L+NG CK  ++  A  L + M    +VPD +TYN L++G C
Sbjct: 450 LFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLC 509

Query: 427 KHG 429
           K G
Sbjct: 510 KSG 512



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + +  L T     Y +++  G  P V+ +  L+H  C  G+ ++   +  +   R 
Sbjct: 224 IVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRN 283

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++    ++N LI+  CK   L +   ++++M   G RPD+ T++ L++G C  N + +A 
Sbjct: 284 VNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEAR 343

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L     E G+TP+   +  LI G+CKN RID      EA  + ++M    L P+ +TY+
Sbjct: 344 KLFDTFAECGITPDVWSYNILIIGYCKNNRID------EALSLFNKMNYKKLAPNIVTYS 397

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DG CK G +  A ++   +   G   + + +  ++   C+   V +A  +   M + 
Sbjct: 398 SLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFER 457

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL P+ ++Y ++I+ +CK+        L +EM     +P   TYN L++GLCK G++ +A
Sbjct: 458 GLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHA 517

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCK 427
             L + M D G   D ITYNIL +   K
Sbjct: 518 WELFNVMHDGGPPVDVITYNILFDAFSK 545



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 170/332 (51%), Gaps = 11/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PSV  FN+++  + K      A  +  + G RG+  + V+ + LIN +C   ++   F +
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSV 135

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             ++   G + +  T + ++ GLC    +  A      +  +G   ++V + TLI+G CK
Sbjct: 136 LGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCK 195

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G  +EA +++ +M    + P+ + Y +++DG CK+G +  A D+  +++ RGI
Sbjct: 196 ------IGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGI 249

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D   +T LI GFC  G+  E  R+L +M+   +  +  TY ++ID  CK G       
Sbjct: 250 DPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHD 309

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M   G  P + T+N LM+G C +  +  A  L DT  + G+ PD  +YNIL+ G+C
Sbjct: 310 MRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYC 369

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           K+   ++    F+K+  +K L  +   Y+SL+
Sbjct: 370 KNNRIDEALSLFNKMNYKK-LAPNIVTYSSLI 400



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 9/267 (3%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P V  ++ ++  + K      A  L  +M  RG+TP+ V  + LI+ +C        G M
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCH------LGHM 129

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
             A  ++  +   G   + IT T ++ G C  G++  AL+    ++ +G  LD V +  L
Sbjct: 130 GFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTL 189

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G C+ G   EA  +L +M    ++P+   Y M++D  CK+G       L  ++   G 
Sbjct: 190 INGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGI 249

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH---GNPED 433
            P V TY  L++G C  GQ +    LL  M+D  V  +  TYNIL++  CK    G   D
Sbjct: 250 DPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHD 309

Query: 434 FDKLQSEKGLVSDYACYTSLVSKSSKY 460
              L  E+G   D   + +L+S    Y
Sbjct: 310 MRNLMIERGQRPDLVTFNTLMSGYCLY 336



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 6/223 (2%)

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +DDA  L   +      P+ V F  ++      G I        A  +  +M   G+ P 
Sbjct: 59  IDDAVALFTRLITMHPLPSVVEFNMIL------GSIVKMKHYPTAISLSKQMGLRGITPS 112

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            +T +IL++ +C  G +  A  +   ++KRG +L+ +  T ++ G C  G+V +A     
Sbjct: 113 IVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHD 172

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            ++  G   D+ TY  +I+  CK G T+  F LL +M      P V  YN +++GLCK G
Sbjct: 173 SVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDG 232

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            +  A  L   ++  G+ PD  TY  L+ G C  G   +  +L
Sbjct: 233 LVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRL 275


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 187/342 (54%), Gaps = 16/342 (4%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNL 180
            +G S   Y +N LM      G+++DA  +F+ + + G+++  V SFN +I G CK  ++
Sbjct: 191 QFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDV 250

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTT 239
            +   L   M+  G  PD  T++ L+NGLC+   +     +L  +   G+  PN V +T+
Sbjct: 251 QKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTS 310

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I G+CK GR      M++A  + ++M   G +P+ +TY +L++G+ K G++ SA+ + +
Sbjct: 311 VISGYCKAGR------MEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQ 364

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +MI R    D V F++LI G+CR G++ +A ++  EM +  ++P+  T+ ++I  FCK  
Sbjct: 365 QMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQN 424

Query: 360 DTKTGFRLLKE--MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            +      LK+  MR+D   P    YN +++ LCK G++  ANM+L  M + G  PD  T
Sbjct: 425 RSGEALHFLKKMNMRTD-IAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYT 483

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           Y IL+ GHC  G   +    F K+  E G   D     S +S
Sbjct: 484 YTILIIGHCMKGRIAEAVTFFHKM-VETGCSPDSIVVNSFIS 524



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 162/315 (51%), Gaps = 8/315 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           YSP V+ FNV++  +CK G ++ A  + +   + G     V+ N L+NG C+AK + +G 
Sbjct: 230 YSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGR 289

Query: 185 RLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +   ++  G+  P+V TY+++I+G CK  R++DA  + ++M   G +PN V +  LI+G
Sbjct: 290 EVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLING 349

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K      AG+M  A  +  +M      PD +T++ L+DG+C+ G L+ A+ I  EM +
Sbjct: 350 YGK------AGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQ 403

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVIDCFCKNGDTK 362
             I+ +   F  +I  FC+  +  EA   L++M ++  + P    Y  VID  CK G   
Sbjct: 404 YHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVD 463

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +L EM   G  P   TY  L+ G C  G++  A      M++ G  PD I  N  +
Sbjct: 464 EANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFI 523

Query: 423 EGHCKHGNPEDFDKL 437
               K G P + D +
Sbjct: 524 SCLLKSGMPGEVDHI 538



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 183/420 (43%), Gaps = 32/420 (7%)

Query: 1   PHFRLTL----HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFA--------- 47
           PH +L +    H+Y  ++  +     H+ A  L   +  + G   +A   +         
Sbjct: 117 PHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAA 176

Query: 48  ----------SILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR-LLRKHYFRIPARG 96
                     S     G  +     + LM +++  G + DA+  F   ++   +      
Sbjct: 177 GLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWS 236

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +I  + +       L     + ++G SP     N+L++ LC+  ++   + V     
Sbjct: 237 FNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQ 296

Query: 157 KRGL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           + G+     V++ ++I+G+CKA  +++   + + M   G  P+V TY+ LING  K   +
Sbjct: 297 RDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNM 356

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
             A  +  +M  R   P+ V F++LIDG+C+ G++D      +A KI  EM    + P+ 
Sbjct: 357 GSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLD------DAMKIWTEMAQYHIQPNA 410

Query: 276 ITYTILLDGFCKEGDLESALDIRKEM-IKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            T+ I++  FCK+     AL   K+M ++  I      +  +I   C+GGKV EA  +L 
Sbjct: 411 HTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILI 470

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM + G +PD  TYT++I   C  G          +M   G  P     N+ ++ L K G
Sbjct: 471 EMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSG 530



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  Y +++  G SP+V  +NVL++   K G +  A  V+ +   R      V+F++LI+
Sbjct: 324 AMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLID 383

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LT 231
           G+C+   LD+  ++ + M    ++P+ +T+  +I+  CK+NR  +A   L +M  R  + 
Sbjct: 384 GYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIA 443

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P   I+  +ID  CK G++D      EA  I+ EM   G  PDK TYTIL+ G C +G +
Sbjct: 444 PQAFIYNPVIDVLCKGGKVD------EANMILIEMEEKGCRPDKYTYTILIIGHCMKGRI 497

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             A+    +M++ G   D++   + IS   + G   E + ++R
Sbjct: 498 AEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIMR 540



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 143/303 (47%), Gaps = 32/303 (10%)

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER- 228
           L +  C +  L     L S      M P  ++Y  +I+ +C+  R  DA  L  +M ++ 
Sbjct: 98  LRHAPCASSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQS 157

Query: 229 GLTPNDVIFTTL--------------------------IDGHCKNGRIDM---AGDMKEA 259
           G  PN    + L                          I+ +  N  +D+    G +++A
Sbjct: 158 GYFPNARFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDA 217

Query: 260 RKIVDEMCTNGL-NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
             + +     G+ +PD  ++ +++ G CK GD++ AL++ + M + G   D V    L++
Sbjct: 218 VALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVN 277

Query: 319 GFCRGGKVVEAERMLREMLKVGL-KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           G CR  +V +   +LR + + G+  P+  TYT VI  +CK G  +    +  +M + G  
Sbjct: 278 GLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTS 337

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P V TYN L+NG  K G + +A  +   M+    +PD +T++ L++G+C+ G  +D  K+
Sbjct: 338 PNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKI 397

Query: 438 QSE 440
            +E
Sbjct: 398 WTE 400



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 5/183 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R       +  + E+  Y   P+ + F +++H  CK+ +  +A     +   R 
Sbjct: 381 LIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRT 440

Query: 160 -LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +   A  +N +I+  CK   +DE   +   ME  G RPD YTY+ LI G C + R+ +A
Sbjct: 441 DIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEA 500

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKIT 277
               H+M E G +P+ ++  + I    K+G   M G++    +I     ++   +P  +T
Sbjct: 501 VTFFHKMVETGCSPDSIVVNSFISCLLKSG---MPGEVDHIMRIAAGGASSSWKDPSPVT 557

Query: 278 YTI 280
            +I
Sbjct: 558 QSI 560


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 176/344 (51%), Gaps = 9/344 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + R    +  L  Y ++  +G   + Y  N+L++  C   ++  A  V  +  K G
Sbjct: 16  LLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLG 75

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              +  +F TLI G C    + E  +L   M G G +PDV TY  LINGLCK+ +L +A 
Sbjct: 76  YQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEAL 135

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M  +G++PN+  +++LI G C      + G  KEA ++   M    + PD++T+ 
Sbjct: 136 SLFSDMLAKGISPNNFTYSSLIHGLC------ILGHWKEAIRLFYAMIHRKIMPDQLTFN 189

Query: 280 ILLDGFCKEGDLE---SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            L+D  CKEG ++    A+ + +EM ++G+  D V +  LI G C  G++ +A  +  EM
Sbjct: 190 TLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEM 249

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +  G  PD  TY ++ D  CKN        LLK +      P +  Y+ +M+G+C+ G+L
Sbjct: 250 VVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGEL 309

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           + A  L   +   G+ PD  TY I++ G C+ G   +  KL  E
Sbjct: 310 EAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGE 353



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 151/288 (52%), Gaps = 3/288 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY PS   F  L+  LC EGKI +A  +FD+    G     +++ TLING CK +
Sbjct: 70  DILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDR 129

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E   L S M   G+ P+ +TYS+LI+GLC      +A  L + M  R + P+ + F 
Sbjct: 130 QLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFN 189

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+D  CK G I +   M +A  + +EM   GL PD +TY  L+ G C  G L  A+ + 
Sbjct: 190 TLVDALCKEGMIQI---MDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALF 246

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM+  G   D V +  L    C+  ++ EA  +L+ +    L PD   Y++V+D  C+ 
Sbjct: 247 HEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRA 306

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           G+ +    L  ++ S G  P V TY  ++NGLC+ G L  A+ L   M
Sbjct: 307 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 354



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 14/336 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F+ L+  + +         ++ +    G+     + N LIN  C    L   F +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +   G +P   T++ LI GLC E ++ +A  L  +M   G  P+ + + TLI+G CK
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + +      + EA  +  +M   G++P+  TY+ L+ G C  G  + A+ +   MI R I
Sbjct: 128 DRQ------LTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKI 181

Query: 307 ELDNVAFTALISGFCRGGKVV---EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             D + F  L+   C+ G +    +A  +  EM + GL PD  TY  +I   C  G  + 
Sbjct: 182 MPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRD 241

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM   G +P + TY  L + LCK+ +L  A +LL  +    + PD   Y+I+++
Sbjct: 242 AIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMD 301

Query: 424 GHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           G C+ G  E     F KL S KGL  D   YT +++
Sbjct: 302 GMCRAGELEAARDLFSKL-SSKGLHPDVRTYTIMIN 336



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 166/346 (47%), Gaps = 27/346 (7%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------TR 53
           H+   L  Y  M  F + H  ++    L++       +G + S+   IL+        T 
Sbjct: 25  HYSTVLSLYKQMDSFGIPHNTYT-LNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATF 83

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
            T + GL ++         G + +A+Q F  +    F+        LI+ + +    T  
Sbjct: 84  TTLIRGLCVE---------GKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEA 134

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  + ++L  G SP+ + ++ L+H LC  G  K+A  +F     R +    ++FNTL++ 
Sbjct: 135 LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDA 194

Query: 174 HCKA---KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
            CK    + +D+   L   M   G+ PD  TY+ LI+GLC   RL DA  L HEM   G 
Sbjct: 195 LCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ 254

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V +  L D  CKN R      + EA  ++  +    L+PD   Y+I++DG C+ G+
Sbjct: 255 IPDLVTYRILFDYLCKNHR------LAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGE 308

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           LE+A D+  ++  +G+  D   +T +I+G C+ G + EA ++  EM
Sbjct: 309 LEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 354



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 39/229 (17%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           + +  + SLF+ +L  +G         +L+     LG   +AI+ F  +           
Sbjct: 129 RQLTEALSLFSDML-AKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 97  CRCLIDRMMRTNLPTV---TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
              L+D + +  +  +    +G + E+   G  P    +N L+H LC  G+++DA  +F 
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 247

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-------------------- 193
           E    G     V++  L +  CK   L E   L  V+EG+                    
Sbjct: 248 EMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAG 307

Query: 194 ---------------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
                          G+ PDV TY+ +INGLC++  L +A  L  EM E
Sbjct: 308 ELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 356



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML++   P    ++ ++    +     T   L K+M S G      T N L+N  C   +
Sbjct: 1   MLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNR 60

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYT 451
           L  A  +L  +L LG  P   T+  L+ G C  G   +    FDK+  E G   D   Y 
Sbjct: 61  LGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE-GFQPDVLTYG 119

Query: 452 SLVSKSSKYRQ 462
           +L++   K RQ
Sbjct: 120 TLINGLCKDRQ 130


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 183/337 (54%), Gaps = 6/337 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P V  +  L+H  C  GK + A+ +F+E    G+     + + LI+  C
Sbjct: 480 LFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLC 539

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E  +L  V+   G   DV T + L+ GLC ++R+  A  L  +M + G  PN V
Sbjct: 540 KKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVV 599

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLES 293
              TL+ G C++G I +A ++   + ++ +    G+N  P+ I+Y+I++DG CK G  + 
Sbjct: 600 TCATLMKGLCQSGNIKIALELH--KNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDE 657

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++ KEM   G+  D +++T+LI GFCR GK  +A+ +  EM+ +G++PD  T++++ID
Sbjct: 658 ARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLID 717

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G       LL+ M   G +P   TY  L+ GLC + ++  A  L   M  LG +P
Sbjct: 718 MLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLP 777

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACY 450
           D +TY  L++G C+ GN +    L+  K ++SD   Y
Sbjct: 778 DVVTYGTLMKGLCQTGNIK--TALELHKKMLSDTGQY 812



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 225/447 (50%), Gaps = 41/447 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLH--LIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           +Y+T++H         +A+ L +  L V  +   +++S+   +L  +G  +     + L+
Sbjct: 495 SYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEA---NKLL 551

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
            V +  G + D + C  L++            C+  R+ +          +L++   G  
Sbjct: 552 EVVIQRGCILDVVTCTTLVKG----------LCMKHRISKAT------QLFLKMQKLGCM 595

Query: 127 PSVYVFNVLMHKLCKEGKIKDA----QMVFDEFGKRGLHA--TAVSFNTLINGHCKAKNL 180
           P+V     LM  LC+ G IK A    + +  +    G++    A+S++ +I+G CK    
Sbjct: 596 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 655

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DE   L   M+  G+ PDV +Y++LI+G C+  +  DA+ L +EM + G+ P+   F+ L
Sbjct: 656 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 715

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ID  CK G++       EA ++++ M   G  P+ +TYT L+ G C    +  A  +  +
Sbjct: 716 IDMLCKEGKV------IEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 769

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK------VGLKPDDATYTMVIDC 354
           M K G   D V +  L+ G C+ G +  A  + ++ML          KPD  +Y+++ID 
Sbjct: 770 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 829

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK+G       L KEM++ G +P V +Y +L++G C+ G+L++A  L + M+D GV  +
Sbjct: 830 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 889

Query: 415 DITYNILLEGHCKHGNPED--FDKLQS 439
            +TY++++ G CK G  +   F K+++
Sbjct: 890 AVTYSVMIHGFCKEGQIDKALFQKMEA 916



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 194/397 (48%), Gaps = 56/397 (14%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+LD G  P V   +VL+  LCK+GK+ +A  + +   +RG     V+  TL+ G C
Sbjct: 515 LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLC 574

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYT---------------------------------- 201
               + +  +L   M+  G  P+V T                                  
Sbjct: 575 MKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGIN 634

Query: 202 -------YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
                  YS +I+GLCK  R D+A  L  EM   G+ P+ + +T+LI G C++G+     
Sbjct: 635 CKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGK----- 689

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             K+A+ + +EM   G+ PD  T+++L+D  CKEG +  A ++ + MI+RG   + V +T
Sbjct: 690 -WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYT 748

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L+ G C   ++ EA ++  +M K+G  PD  TY  ++   C+ G+ KT   L K+M SD
Sbjct: 749 TLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSD 808

Query: 375 ------GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
                    P V +Y+ +++GLCKHG+   A  L   M  LGV+P+ I+Y  L+ G C+ 
Sbjct: 809 TGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRS 868

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           G  ED   L +E   +G+  +   Y+ ++    K  Q
Sbjct: 869 GKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQ 905



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 169/317 (53%), Gaps = 13/317 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT---------LINGH 174
           G  P  + FN+L++ LC   ++ +         +RG     V+++          LI+  
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK   + E   L  VM   G   D+ TYS LI GLC E+R+ +A  L   M + G  P+ 
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLE 292
           + + TL+ G C+ G I++A  ++  ++++++    G+   P  I+Y+I++DG CK+   +
Sbjct: 125 ITYGTLMKGLCQTGNINIA--LQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRED 182

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++ KEM  +G+  D +++T+LI GFC  GK  +A+ +  EML VG++PD  T  ++I
Sbjct: 183 EARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLI 242

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D FCK G       LL+ M   G +  + TY+ L+ GLC   ++  A  L  +M  LG  
Sbjct: 243 DMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCR 302

Query: 413 PDDITYNILLEGHCKHG 429
           PD I Y  L++G C+ G
Sbjct: 303 PDAIAYGTLMKGLCQTG 319



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 181/384 (47%), Gaps = 45/384 (11%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P V  +  L+H  C  GK + A+ +F+E    G+     +   LI+  C
Sbjct: 187 LFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFC 246

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   + E   L  VM   G   D+ TYS LI GLC ++R+ +A  L   M + G  P+ +
Sbjct: 247 KEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAI 306

Query: 236 IFTTLIDGHCKNGRIDMAGDM-KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
            + TL+ G C+ G+I++A  + +E      +     + PD  T ++L+D  CKEG +  A
Sbjct: 307 AYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEA 366

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT------- 347
            ++ + MI+RG  LD V ++ LI G C   ++ EA  +   M K+G +PD  T       
Sbjct: 367 NELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKG 426

Query: 348 ----------------------------------YTMVIDCFCKNGDTKTGFRLLKEMRS 373
                                             Y+++ID  CK+        L +EM++
Sbjct: 427 LCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKA 486

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P V +Y  L++G C  G+ + A  L + MLD+G+ PD  T ++L++  CK G   +
Sbjct: 487 QGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIE 546

Query: 434 FDKLQS---EKGLVSDYACYTSLV 454
            +KL     ++G + D    T+LV
Sbjct: 547 ANKLLEVVIQRGCILDVVTCTTLV 570



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 201/405 (49%), Gaps = 58/405 (14%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-----QMVFD--EFGKRGLHATAVSFN 168
            ++ +   G  P    +  LM  LC+ GKI  A     +M+ D  ++G + +     + +
Sbjct: 292 LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSS 351

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            LI+  CK   + E   L  VM   G   D+ TYS LI GLC E+R+ +A  L   M + 
Sbjct: 352 MLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 411

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFC 286
           G  P+ + + TL+ G C+ G I++A  ++  ++++++    G+   P  I+Y+I++DG C
Sbjct: 412 GCRPDAITYGTLMKGLCQTGNINIA--LQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLC 469

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K+   + A ++ +EM  +GI  D +++T LI GFC  GK  +A+ +  EML VG++PD  
Sbjct: 470 KDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVT 529

Query: 347 TYTMVIDCFCKNGDTKTGFRLLK-----------------------------------EM 371
           T +++ID  CK G      +LL+                                   +M
Sbjct: 530 TSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKM 589

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNA-----NMLLDTM-LDLGVVPDDITYNILLEGH 425
           +  G +P V T   LM GLC+ G +K A     NML DT    +   P+ I+Y+I+++G 
Sbjct: 590 QKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGL 649

Query: 426 CKHGNPEDFDKLQSEK---GLVSDYACYTSLV---SKSSKYRQKR 464
           CK G  ++  +L  E    G++ D   YTSL+    +S K++  +
Sbjct: 650 CKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK 694



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 172/356 (48%), Gaps = 22/356 (6%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G+  +I+ Y   P V   ++L+  LCKEGK+ +A  + +   +RG     V+++TLI G 
Sbjct: 40  GYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL 99

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG----- 229
           C    + E   L   M+  G RPD  TY  L+ GLC+   ++ A  L  EM         
Sbjct: 100 CMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGI 159

Query: 230 -LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
              P  + ++ +IDG CK+ R D      EAR++  EM   G+ PD I+YT L+ GFC  
Sbjct: 160 KCKPTLISYSIIIDGLCKDRRED------EARELFKEMKAQGMMPDVISYTSLIHGFCHS 213

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G  E A  +  EM+  GI+ D      LI  FC+ GKV+EA  +L  M+  G   D  TY
Sbjct: 214 GKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTY 273

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           + +I   C         +L   M+  G  P    Y  LM GLC+ G++  A  L   ML+
Sbjct: 274 STLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLN 333

Query: 409 -------LGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
                    + PD  T ++L++  CK G   + ++L     ++G + D   Y++L+
Sbjct: 334 DTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLI 389



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 24/283 (8%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT---------L 240
           M  +G+ PD +T++ LIN LC   R+++    +  +  RG  P+ V ++          L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ID  CK G++       EA ++++ M   G   D +TY+ L+ G C E  +  A  +   
Sbjct: 61  IDILCKEGKV------IEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMS 114

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK------VGLKPDDATYTMVIDC 354
           M K G   D + +  L+ G C+ G +  A ++ +EML       +  KP   +Y+++ID 
Sbjct: 115 MQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDG 174

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK+        L KEM++ G +P V +Y +L++G C  G+ + A  L + MLD+G+ PD
Sbjct: 175 LCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPD 234

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             T  +L++  CK G   + ++L      +G + D   Y++L+
Sbjct: 235 VTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLI 277


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/416 (31%), Positives = 203/416 (48%), Gaps = 15/416 (3%)

Query: 47  ASILETRGTHLPGLVLDALMIVYVD----LGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A+IL       PG V      V VD     G +DDA      + +H  R+ A     L+D
Sbjct: 116 AAILTRALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLD 175

Query: 103 RMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
             +R       +   LEI++ G    +V  + +L+  L   G I   + V DE   + + 
Sbjct: 176 CYVRRK-DDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVA 234

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
                +  +IN +C+A N+     +     G+G+ P+  TY  LING CK  +++ AE+L
Sbjct: 235 GDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEML 294

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L +M  RG+  N +IF T+IDG+C+ G +D A  +K A      M   G+  D  TY  L
Sbjct: 295 LADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAA------MEKMGIELDVYTYNTL 348

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
             G C+   +  A  +   MI++G+  + V +T LIS  C+ G +VEA R+ REM   G 
Sbjct: 349 ACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGA 408

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P   TY +++D + K G  +   R  KEM   G +P V TY +L++G C +G++  A  
Sbjct: 409 MPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALK 468

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           L + M   G  P+ + Y  L+ G  K G  E+  +L  +    GL  D + Y++LV
Sbjct: 469 LFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALV 524



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 155/272 (56%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G  P+   + VL++  CK G+++ A+M+  +   RG+    + FNT+I+G+C+  
Sbjct: 262 ECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQG 321

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D   ++K+ ME  G+  DVYTY+ L  GLC+ NR+ +A+ LLH M E+G+ PN V +T
Sbjct: 322 MVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYT 381

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  HCK G      DM EAR++  EM   G  P  +TY +++DG+ K+G +  A   R
Sbjct: 382 TLISIHCKEG------DMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFR 435

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM K+G+  D   + +L+ G C  GKV  A ++  EM   G +P+   YT +I    K 
Sbjct: 436 KEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKE 495

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L  +M   G  P    Y+AL+  L
Sbjct: 496 GRSEEAFQLYDDMLKAGLTPDDSLYSALVGSL 527



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 182/372 (48%), Gaps = 44/372 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           S S    +V++   CK G++ DA+ + DE  + G+   A+ +N+L++ + + K+      
Sbjct: 129 SVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQE 188

Query: 186 LKSVMEGSGMRP-----------------------------------DVYTYSALINGLC 210
           L  +ME  G+                                     DVY Y+A+IN  C
Sbjct: 189 LLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYC 248

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           +   +  A  +  E    G+ PN+  +  LI+G CK       G M+ A  ++ +M   G
Sbjct: 249 RAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCK------IGQMEAAEMLLADMQGRG 302

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +  ++I +  ++DG+C++G +++AL ++  M K GIELD   +  L  G CR  ++ EA+
Sbjct: 303 VGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAK 362

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L  M++ G+ P+  TYT +I   CK GD     RL +EM   G +P+V TYN +M+G 
Sbjct: 363 TLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGY 422

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
            K G ++ A      M   G+VPD  TY  L+ GHC +G  +   KL  E   +G   + 
Sbjct: 423 IKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNV 482

Query: 448 ACYTSLVSKSSK 459
             YT+L+S  +K
Sbjct: 483 VAYTALISGLAK 494



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  PSV  +NV+M    K+G I++A+    E  K+GL     ++ +L++GHC
Sbjct: 399 LFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHC 458

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +D   +L   M+  G  P+V  Y+ALI+GL KE R ++A  L  +M + GLTP+D 
Sbjct: 459 VNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDS 518

Query: 236 IFTTLIDGHCKNGRIDM 252
           +++ L+     + R D+
Sbjct: 519 LYSALVGSLHTDNRKDI 535


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 168/297 (56%), Gaps = 6/297 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V  +  L+H LCK GK++ A ++F    + GL    V++  LI G C   +L   FR
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L  +ME +G+ P+ +T+S LI+ LCK  ++++A+L L  + ++G+  N+V++T+LIDG C
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLC 363

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G+ID A ++ +      +M + G  PD  +Y+ L+DG C++  L  A  + ++M+++G
Sbjct: 364 KTGKIDAADELMQ------KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+   V +T +I    R       +++  +M+  G+ PD  TYT+ +  +C+ G  +   
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            ++ +M   G  P + TYN L+ G    G +  A    + M+  G  P++ +Y +LL
Sbjct: 478 SMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 206/401 (51%), Gaps = 23/401 (5%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGF 116
           + ++ Y   G L  A + F L+       P RGC         L+  ++   +    +  
Sbjct: 112 SFVLGYCRAGMLTHACRVFVLM-------PLRGCLRTAFTYTALLHGLLGAGMVREAMAV 164

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           ++ +     +P  +V+  ++H LC+ G+ ++A+++ +E    G     V +N LI+G+C 
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCN 224

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A  ++   ++   M+G+   P+V TY+ LI+GLCK  +++ A +L   M E GL PN V 
Sbjct: 225 AGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVT 284

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T LI G C  G +  A       +++  M TNGL P+  T+++L+D  CK   +E A  
Sbjct: 285 YTALIQGQCNEGHLQCA------FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
               ++K+G++++ V +T+LI G C+ GK+  A+ ++++M+  G  PD  +Y+ +ID  C
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +         +L++M   G   +  TY  +++ L +    +    + D M+  G+ PD +
Sbjct: 399 RQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIV 458

Query: 417 TYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           TY + +  +C+ G  ED + +     ++G+  +   Y +L+
Sbjct: 459 TYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLI 499



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 169/306 (55%), Gaps = 6/306 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P++ V+N L+   C  G+++ A  VF+            ++  LI+G CK+  ++  
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S M  +G+ P+V TY+ALI G C E  L  A  LLH M   GL PND  F+ LID 
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDA 326

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK  +++      EA+  +  +   G+  +++ YT L+DG CK G +++A ++ ++MI 
Sbjct: 327 LCKREKVE------EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G   D  ++++LI G CR  K+ +A  ML +M++ G++    TYT++ID   +   ++ 
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEG 440

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++  +M + G  P + TY   +   C+ G++++A  ++  M+D GV P+ +TYN L+ 
Sbjct: 441 PKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIR 500

Query: 424 GHCKHG 429
           G+   G
Sbjct: 501 GYANLG 506



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 46/374 (12%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G +P  Y +   +   C+ G +  A  VF     RG   TA ++  L++G   A  
Sbjct: 98  LLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGM 157

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M      PD + Y+ +++GLC+  R ++AE+LL E    G  PN V++  
Sbjct: 158 VREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNA 217

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LIDG+C       AG+M+ A K+ + M  N  +P+  TYT L+ G CK G +E A+ +  
Sbjct: 218 LIDGYCN------AGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFS 271

Query: 300 EMIKRGIELDNVAFTALISGFCRGG----------------------------------- 324
            M++ G+E + V +TALI G C  G                                   
Sbjct: 272 RMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKRE 331

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           KV EA+  L  ++K G+K ++  YT +ID  CK G       L+++M S+G +P   +Y+
Sbjct: 332 KVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYS 391

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSE 440
           +L++GLC+  +L  A ++L+ M++ G+    +TY I+++   +     G  + FDK+ + 
Sbjct: 392 SLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIA- 450

Query: 441 KGLVSDYACYTSLV 454
            G+  D   YT  V
Sbjct: 451 TGINPDIVTYTVFV 464



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 163/316 (51%), Gaps = 18/316 (5%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + F+VL+  LCK  K+++AQ+      K+G+    V + +LI+G CK   +D  
Sbjct: 312 GLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAA 371

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G  PD ++YS+LI+GLC++ +L  A L+L +M E+G+  + V +T +ID 
Sbjct: 372 DELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDE 431

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +   +   G     +KI D+M   G+NPD +TYT+ +  +C+EG +E A  +  +M+ 
Sbjct: 432 LVR--EVGSEG----PKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVD 485

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+  + V +  LI G+   G V +A      M+  G KP++ +YT+++    K   +  
Sbjct: 486 RGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDN 545

Query: 364 G-----------FRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
                        ++L E  ++  LP A + Y+  +  LC+  +L+ A      M +  +
Sbjct: 546 SVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANL 605

Query: 412 VPDDITYNILLEGHCK 427
            P +  Y  +++  C+
Sbjct: 606 TPSEDVYTSIIDCCCR 621



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 164/326 (50%), Gaps = 9/326 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L++  C  G I  A+         GL   + ++ + + G+C+A  L    R+  +M 
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMP 134

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G     +TY+AL++GL     + +A  +   M      P+  ++ T++ G C+ GR +
Sbjct: 135 LRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTE 194

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A  + E         +NG  P+ + Y  L+DG+C  G++E AL + + M       +  
Sbjct: 195 EAEVLLEEAM------SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVR 248

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LI G C+ GKV  A  +   M++ GL+P+  TYT +I   C  G  +  FRLL  M
Sbjct: 249 TYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLM 308

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            ++G +P   T++ L++ LCK  +++ A + L +++  GV  +++ Y  L++G CK G  
Sbjct: 309 ETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKI 368

Query: 432 EDFDKLQSE---KGLVSDYACYTSLV 454
           +  D+L  +   +G V D   Y+SL+
Sbjct: 369 DAADELMQKMISEGFVPDAHSYSSLI 394



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 171/352 (48%), Gaps = 18/352 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +T           +++  G+ P  + ++ L+  LC++ K+  A ++ ++  ++G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + A+ V++  +I+   +    +   ++   M  +G+ PD+ TY+  +   C+E R++DAE
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            ++ +M +RG+ PN V + TLI G+   G +  A    E       M   G  P++ +YT
Sbjct: 478 SMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEV------MVGKGWKPNEDSYT 531

Query: 280 ILLDGFCKEGDLESALDIRK------------EMIKRGIELDNVAFTALISGFCRGGKVV 327
           +LL    K+   ++++DI K            ++ +R + L    ++  I   CR  ++ 
Sbjct: 532 VLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLE 591

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA+     M    L P +  YT +IDC C+         LL  M   G+LP +E+Y  ++
Sbjct: 592 EAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIII 651

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           + LC+ G  + A  +   +L      D+I + IL+ G  + G+  +F  L S
Sbjct: 652 SSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLS 703



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V+  S   P +   + L+  L +     D E L   M  R L      +TTLI+ +C   
Sbjct: 31  VLSPSAPLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLR----TYTTLINAYC--- 83

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
              +AGD+  A++ +  +   GL PD   YT  + G+C+ G L  A  +   M  RG   
Sbjct: 84  ---LAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLR 140

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               +TAL+ G    G V EA  +   M      PD   Y  ++   C+ G T+    LL
Sbjct: 141 TAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLL 200

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +E  S+G  P +  YNAL++G C  G++++A  + + M      P+  TY  L+ G CK 
Sbjct: 201 EEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKS 260

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           G  E    L S   E GL  +   YT+L+ 
Sbjct: 261 GKVERAMVLFSRMVEAGLEPNVVTYTALIQ 290



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 137/302 (45%), Gaps = 19/302 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID ++R          + +++  G +P +  + V +   C+EG+++DA+ +  +   RG
Sbjct: 428 IIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRG 487

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD--- 216
           +    V++NTLI G+     + + F    VM G G +P+  +Y+ L+  + K++  D   
Sbjct: 488 VFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSV 547

Query: 217 ---------DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
                    D ++LL ++ ER L     I++  I   C+  R++      EA+     M 
Sbjct: 548 DIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLE------EAKHFFMGMQ 601

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
              L P +  YT ++D  C+   L  AL +   M K G      ++  +IS  C GG   
Sbjct: 602 NANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFR 661

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            A+ +  ++L      D+  + ++I    + G       LL  M+  G+ P+  T NA++
Sbjct: 662 TAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS-NTINAMI 720

Query: 388 NG 389
            G
Sbjct: 721 TG 722



 Score = 38.1 bits (87), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 12/162 (7%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C +DR+           F++ + +   +PS  V+  ++   C+   + DA  + D   
Sbjct: 583 CLCRVDRLEEAK------HFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMT 636

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K G      S+  +I+  C+  N      +   +       D   +  LI GL ++  + 
Sbjct: 637 KSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVA 696

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           +   LL  M E G  P++ I   +       G I +  +++E
Sbjct: 697 EFSSLLSVMKEHGYQPSNTINAMI------TGEITVTNEVQE 732


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/272 (36%), Positives = 157/272 (57%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G  P+   + VL++  CK G+++ A+M+  +   +G+    + FNT+I+G+C+  
Sbjct: 98  ECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG 157

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+  ++K+ ME  G+  D+YTY+ L  GLC+ NRLD+A+ LLH M E G+ PN V +T
Sbjct: 158 MVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYT 217

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  HCK+      GDM EAR++  EM   G  P  +TY +++ G+ K+G +  A   R
Sbjct: 218 TLISIHCKD------GDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFR 271

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM K+G   D   + +L+ G C  GKV  A ++  EM + G +P+   YT +I    K 
Sbjct: 272 KEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKE 331

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L  +M   G +P    Y+AL+  L
Sbjct: 332 GRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 363



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 184/359 (51%), Gaps = 39/359 (10%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           S S    +V++  LCK G++ DA+ + D+  + G+   A+ +N+L++  C  +  D+G R
Sbjct: 11  SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLD--CYVRQKDDG-R 67

Query: 186 LKSVME---------------------------GSGMRPDVYTYSALINGLCKENRLDDA 218
           ++ ++E                           G+G+ P+  TY  LING CK  +++ A
Sbjct: 68  VQEILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAA 127

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           E+LL +M  +G+  N +IF T+IDG+C+ G +D      +A KI   M   G+  D  TY
Sbjct: 128 EMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVD------DALKIKAAMEKMGVELDIYTY 181

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L  G C+   L+ A  +   MI+ G+  + V +T LIS  C+ G +VEA R+ REM +
Sbjct: 182 NTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAE 241

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G  P   TY ++I  + K G  +   R  KEM   G +P V TY +L++G C +G++  
Sbjct: 242 KGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDV 301

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           A  L + M   G  P+ + Y  L+ G  K G  E   +L  +    GL+ D + Y++LV
Sbjct: 302 ALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 360



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID   R  +    L     +   G    +Y +N L   LC+  ++ +A+ +     + G
Sbjct: 149 MIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMG 208

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++ TLI+ HCK  ++ E  RL   M   G  P V TY+ +I+G  K+  + +AE
Sbjct: 209 VVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAE 268

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
               EM ++G  P+   + +L+ GHC NG++D+      A K+ +EM   G  P+ + YT
Sbjct: 269 RFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDV------ALKLFEEMKQRGTEPNVVAYT 322

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            L+ G  KEG  E+A  +  +M+K G+  D+  ++AL+   
Sbjct: 323 ALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 363



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 77/137 (56%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+ + G +PSV  +NV++H   K+G I++A+    E  K+G      ++ +L++GHC
Sbjct: 235 LFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHC 294

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +D   +L   M+  G  P+V  Y+ALI+GL KE R + A  L  +M + GL P+D 
Sbjct: 295 VNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDS 354

Query: 236 IFTTLIDGHCKNGRIDM 252
           +++ L+     + R D+
Sbjct: 355 LYSALVGSLHTDNRKDV 371


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 168/297 (56%), Gaps = 6/297 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+V  +  L+H LCK GK++ A ++F    + GL    V++  LI G C   +L   FR
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L  +ME +G+ P+ +T+S LI+ LCK  ++++A+L L  + ++G+  N+V++T+LIDG C
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLC 363

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G+ID A ++ +      +M + G  PD  +Y+ L+DG C++  L  A  + ++M+++G
Sbjct: 364 KTGKIDAADELMQ------KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+   V +T +I    R       +++  +M+  G+ PD  TYT+ +  +C+ G  +   
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            ++ +M   G  P + TYN L+ G    G +  A    + M+  G  P++ +Y +LL
Sbjct: 478 SMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 206/401 (51%), Gaps = 23/401 (5%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGF 116
           + ++ Y   G L  A + F L+       P RGC         L+  ++   +    +  
Sbjct: 112 SFVLGYCRAGMLTHACRVFVLM-------PLRGCLRTAFTYTALLHGLLGAGMVREAMTV 164

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           ++ +     +P  +V+  ++H LC+ G+ ++A+++ +E    G     V +N LI+G+C 
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCN 224

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A  ++   ++   M+G+   P+V TY+ LI+GLCK  +++ A +L   M E GL PN V 
Sbjct: 225 AGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVT 284

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +T LI G C  G +  A       +++  M TNGL P+  T+++L+D  CK   +E A  
Sbjct: 285 YTALIQGQCNEGHLQCA------FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
               ++K+G++++ V +T+LI G C+ GK+  A+ ++++M+  G  PD  +Y+ +ID  C
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +         +L++M   G   +  TY  +++ L +    +    + D M+  G+ PD +
Sbjct: 399 RQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIV 458

Query: 417 TYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           TY + +  +C+ G  ED + +     ++G+  +   Y +L+
Sbjct: 459 TYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLI 499



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 169/306 (55%), Gaps = 6/306 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P++ V+N L+   C  G+++ A  VF+            ++  LI+G CK+  ++  
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S M  +G+ P+V TY+ALI G C E  L  A  LLH M   GL PND  F+ LID 
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDA 326

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK  +++      EA+  +  +   G+  +++ YT L+DG CK G +++A ++ ++MI 
Sbjct: 327 LCKREKVE------EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G   D  ++++LI G CR  K+ +A  ML +M++ G++    TYT++ID   +   ++ 
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEG 440

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++  +M + G  P + TY   +   C+ G++++A  ++  M+D GV P+ +TYN L+ 
Sbjct: 441 PKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIR 500

Query: 424 GHCKHG 429
           G+   G
Sbjct: 501 GYANLG 506



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 46/374 (12%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G +P  Y +   +   C+ G +  A  VF     RG   TA ++  L++G   A  
Sbjct: 98  LLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGM 157

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M      PD + Y+ +++GLC+  R ++AE+LL E    G  PN V++  
Sbjct: 158 VREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNA 217

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LIDG+C       AG+M+ A K+ + M  N  +P+  TYT L+ G CK G +E A+ +  
Sbjct: 218 LIDGYCN------AGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFS 271

Query: 300 EMIKRGIELDNVAFTALISGFCRGG----------------------------------- 324
            M++ G+E + V +TALI G C  G                                   
Sbjct: 272 RMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKRE 331

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           KV EA+  L  ++K G+K ++  YT +ID  CK G       L+++M S+G +P   +Y+
Sbjct: 332 KVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYS 391

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSE 440
           +L++GLC+  +L  A ++L+ M++ G+    +TY I+++   +     G  + FDK+ + 
Sbjct: 392 SLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIA- 450

Query: 441 KGLVSDYACYTSLV 454
            G+  D   YT  V
Sbjct: 451 TGINPDIVTYTVFV 464



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 18/312 (5%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + F+VL+  LCK  K+++AQ+      K+G+    V + +LI+G CK   +D  
Sbjct: 312 GLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAA 371

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G  PD ++YS+LI+GLC++ +L  A L+L +M E+G+  + V +T +ID 
Sbjct: 372 DELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDE 431

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +   +   G     +KI D+M   G+NPD +TYT+ +  +C+EG +E A  +  +M+ 
Sbjct: 432 LVRE--VGSEG----PKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVD 485

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+  + V +  LI G+   G V +A      M+  G KP++ +YT+++    K   +  
Sbjct: 486 RGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDN 545

Query: 364 G-----------FRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
                        ++L E  ++  LP A + Y+  +  LC+  +L+ A      M +  +
Sbjct: 546 SVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANL 605

Query: 412 VPDDITYNILLE 423
            P +  Y  +++
Sbjct: 606 TPSEDVYTSIID 617



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 164/326 (50%), Gaps = 9/326 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L++  C  G I  A+         GL   + ++ + + G+C+A  L    R+  +M 
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMP 134

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G     +TY+AL++GL     + +A  +   M      P+  ++ T++ G C+ GR +
Sbjct: 135 LRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTE 194

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A  + E         +NG  P+ + Y  L+DG+C  G++E AL + + M       +  
Sbjct: 195 EAEVLLEEAM------SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVR 248

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LI G C+ GKV  A  +   M++ GL+P+  TYT +I   C  G  +  FRLL  M
Sbjct: 249 TYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLM 308

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            ++G +P   T++ L++ LCK  +++ A + L +++  GV  +++ Y  L++G CK G  
Sbjct: 309 ETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKI 368

Query: 432 EDFDKLQSE---KGLVSDYACYTSLV 454
           +  D+L  +   +G V D   Y+SL+
Sbjct: 369 DAADELMQKMISEGFVPDAHSYSSLI 394



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 131/267 (49%), Gaps = 18/267 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +T           +++  G+ P  + ++ L+  LC++ K+  A ++ ++  ++G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           + A+ V++  +I+   +    +   ++   M  +G+ PD+ TY+  +   C+E R++DAE
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            ++ +M +RG+ PN V + TLI G+   G +  A    E       M   G  P++ +YT
Sbjct: 478 SMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEV------MVGKGWKPNEDSYT 531

Query: 280 ILLDGFCKEGDLESALDIRK------------EMIKRGIELDNVAFTALISGFCRGGKVV 327
           +LL    K+   ++++DI K            ++ +R + L    ++  I   CR  ++ 
Sbjct: 532 VLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLE 591

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDC 354
           EA+     M    L P +  YT +IDC
Sbjct: 592 EAKHFFMGMQNANLTPSEDVYTSIIDC 618



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V+  S   P +   + L+  L +     D E L   M  R L      +TTLI+ +C   
Sbjct: 31  VLSPSAPLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLR----TYTTLINAYC--- 83

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
              +AGD+  A++ +  +   GL PD   YT  + G+C+ G L  A  +   M  RG   
Sbjct: 84  ---LAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLR 140

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               +TAL+ G    G V EA  +   M      PD   Y  ++   C+ G T+    LL
Sbjct: 141 TAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLL 200

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +E  S+G  P +  YNAL++G C  G++++A  + + M      P+  TY  L+ G CK 
Sbjct: 201 EEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKS 260

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           G  E    L S   E GL  +   YT+L+ 
Sbjct: 261 GKVERAMVLFSRMVEAGLEPNVVTYTALIQ 290


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 172/322 (53%), Gaps = 6/322 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   +  L    +  Y ++   G  P+VY +N ++ + C +GK+ +A  +FDE  +RG
Sbjct: 240 LINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERG 299

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++NTLI G C+ + + E  RL   M+  G+ P++ +Y+ LI+G C    LD A 
Sbjct: 300 VACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKAS 359

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L ++M   G +P+   +  LI G  +        DM      V EM   GL+P K+TYT
Sbjct: 360 SLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM------VREMEARGLSPSKVTYT 413

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+D   +  ++E A  I   M K G+  D   +  LI G C  G + EA ++ + + ++
Sbjct: 414 ILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 473

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            LKP+D  Y  +I  +CK G +    RLLKEM  +G +P V +YN+ +  LCK  +   A
Sbjct: 474 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEA 533

Query: 400 NMLLDTMLDLGVVPDDITYNIL 421
            +LL  M++LG+ P    +N++
Sbjct: 534 EVLLKDMIELGLKPSISIWNMI 555



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 208/410 (50%), Gaps = 27/410 (6%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFR------LLRKHYFRIPARGCRCLIDRMMRTNL 109
           +PG    + L+I+ +   F + A + F        L  + F I  +GC C +  + +   
Sbjct: 127 VPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGC-CEVGYLDK--- 182

Query: 110 PTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                GF +  ++ + G SP+V V+  L+   CK G I+  + +F + G+  + A   ++
Sbjct: 183 -----GFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTY 237

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             LING  K     +G  L   M+ +G+ P+VYTY+++I   C + +L++A  L  EM E
Sbjct: 238 TVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRE 297

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+  N V + TLI G C+  R+       EA +++  M  +GL+P+ I+Y  L+DG+C 
Sbjct: 298 RGVACNVVTYNTLIGGLCQERRV------LEAERLMCRMKRDGLSPNLISYNTLIDGYCS 351

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G+L+ A  +  +M   G       +  LI+GF           M+REM   GL P   T
Sbjct: 352 IGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVT 411

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           YT+++D   ++ + +  F++   M   G +  +  Y  L++GLC  G +K A+ L  ++ 
Sbjct: 412 YTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLD 471

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           ++ + P+D+ YN ++ G+CK G+     +L     E G+V + A Y S +
Sbjct: 472 EMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 521



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 181/360 (50%), Gaps = 10/360 (2%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             +I+  +R+ LP   L ++ +++  G  P    FN L+  L K    + A  VF+E  K
Sbjct: 99  EAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TK 157

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
             +     SF  +I G C+   LD+GF +   ME  G+ P+V  Y+ LI+G CK   ++ 
Sbjct: 158 GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIER 217

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
            + L ++M E  +  N   +T LI+G  K       G  K+  ++ ++M   G+ P+  T
Sbjct: 218 GKQLFYKMGELDVVANQYTYTVLINGFFK------MGLKKDGIELYEKMKLTGIVPNVYT 271

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  ++   C +G L +A ++  EM +RG+  + V +  LI G C+  +V+EAER++  M 
Sbjct: 272 YNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMK 331

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + GL P+  +Y  +ID +C  G+      L  +M+S G  P++ TYN L+ G  +     
Sbjct: 332 RDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSA 391

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
               ++  M   G+ P  +TY IL++   +  N E   ++ S   + GLV+D   Y  L+
Sbjct: 392 GVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 451



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 136/305 (44%), Gaps = 53/305 (17%)

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL------------------ 240
           V  + A+IN   +    + A    ++M  RGL P    F  L                  
Sbjct: 95  VLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN 154

Query: 241 ----------------IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
                           I G C+ G +D      +  +++ +M   GL+P+ + YT L+DG
Sbjct: 155 ETKGNVKLDVYSFGIMIKGCCEVGYLD------KGFEVLGQMEEMGLSPNVVVYTTLIDG 208

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVA----FTALISGFCRGGKVVEAERMLREMLKVG 340
            CK GD+E      K++  +  ELD VA    +T LI+GF + G   +   +  +M   G
Sbjct: 209 CCKNGDIERG----KQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG 264

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  TY  +I   C +G     F L  EMR  G    V TYN L+ GLC+  ++  A 
Sbjct: 265 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAE 324

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSK 456
            L+  M   G+ P+ I+YN L++G+C  GN +     F++++S  G     A Y  L++ 
Sbjct: 325 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSS-GQSPSLATYNILIAG 383

Query: 457 SSKYR 461
            S+ +
Sbjct: 384 FSEAK 388


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 183/365 (50%), Gaps = 9/365 (2%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           +DLGFL  A   +R +    F +     R +++ + +         F  +IL  G+    
Sbjct: 173 LDLGFL--AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDS 230

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKS 188
           ++   L+   C+   ++DA  VFD   K    A  +VS++ LI+G C+   L+E F LK 
Sbjct: 231 HIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKD 290

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G +P   TY+ LI  LC    +D A  L  EM  RG  PN   +T LIDG C++G
Sbjct: 291 QMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDG 350

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +I+      EA  +  +M  + + P  ITY  L++G+CK+G +  A ++   M KR  + 
Sbjct: 351 KIE------EANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKP 404

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   F  L+ G CR GK  +A  +L+ ML  GL PD  +Y ++ID  C+ G   T ++LL
Sbjct: 405 NVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLL 464

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M      P   T+ A++N  CK G+   A+  L  ML  G+  D++T   L++G CK 
Sbjct: 465 SSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKV 524

Query: 429 GNPED 433
           G   D
Sbjct: 525 GKTRD 529



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 178/340 (52%), Gaps = 29/340 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V+ + VL+  LC++GKI++A  V  +  K  +  + +++N LING+CK  
Sbjct: 326 EMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDG 385

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +   F L +VME    +P+V T++ L+ GLC+  +   A  LL  M + GL+P+ V + 
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYN 445

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            LIDG C+ G ++ A                             G    A   +  M   
Sbjct: 446 VLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK 505

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G++ D++T T L+DG CK G    AL I + ++K  I     +   ++    +G KV E 
Sbjct: 506 GISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEE 565

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ML ++ K+GL P   TYT ++D   ++GD    FR+L+ M+  G LP V  Y  ++NG
Sbjct: 566 LAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIING 625

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           LC+ G+++ A  LL  M D GV P+ +TY ++++G+  +G
Sbjct: 626 LCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNG 665



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 194/389 (49%), Gaps = 11/389 (2%)

Query: 81  CFRLLRKHY-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
           CF  LR+ + FR+       L+  + + +L  +    Y  +   G+   +  +  +++ L
Sbjct: 146 CFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNAL 205

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPD 198
           CK G  + A+M   +  K G    +    +L+ G C+  NL +  ++  VM       P+
Sbjct: 206 CKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPN 265

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             +YS LI+GLC+  RL++A  L  +M E+G  P+   +T LI   C  G ID      +
Sbjct: 266 SVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID------K 319

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A  + DEM   G  P+  TYT+L+DG C++G +E A  + ++M+K  I    + + ALI+
Sbjct: 320 AFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALIN 379

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G+C+ G+VV A  +L  M K   KP+  T+  +++  C+ G       LLK M  +G  P
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFD 435
            + +YN L++GLC+ G +  A  LL +M    + PD +T+  ++   CK G  +    F 
Sbjct: 440 DIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFL 499

Query: 436 KLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
            L   KG+  D    T+L+    K  + R
Sbjct: 500 GLMLRKGISLDEVTGTTLIDGVCKVGKTR 528



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 175/414 (42%), Gaps = 86/414 (20%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FN LM  LC+ GK   A  +       GL    VS+N LI+G C+  +++  ++L
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKL 463

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            S M    + PD  T++A+IN  CK+ + D A   L  M  +G++ ++V  TTLIDG CK
Sbjct: 464 LSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK 523

Query: 247 NGR--------------------------IDMAGD---MKEARKIVDEMCTNGLNPDKIT 277
            G+                          +DM      +KE   ++ ++   GL P  +T
Sbjct: 524 VGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVT 583

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L+DG  + GD+  +  I + M   G   +   +T +I+G C+ G+V EAE++L  M 
Sbjct: 584 YTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQ 643

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG-------- 389
             G+ P+  TYT+++  +  NG        ++ M   G+      Y++L+ G        
Sbjct: 644 DSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGI 703

Query: 390 ---------------------------------------------LCKHGQLKNANMLLD 404
                                                        LCK G+   +N L+ 
Sbjct: 704 DNSEESTVSDIALRETDPECINELISVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQ 763

Query: 405 TMLDLGVVPDDITYNILLEGHC---KHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            +L+ GV  +    +I++E +C   KH    +   L  + G V  +  +  ++ 
Sbjct: 764 NVLERGVFLEK-AMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQ 816



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 148/331 (44%), Gaps = 12/331 (3%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL+  Y   G +  A +   ++ K   +   R    L++ + R   P   +     +LD
Sbjct: 375 NALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLD 434

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G SP +  +NVL+  LC+EG +  A  +        +    ++F  +IN  CK    D 
Sbjct: 435 NGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADV 494

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
                 +M   G+  D  T + LI+G+CK  +  DA  +L  +         V    L  
Sbjct: 495 ASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETL---------VKMRILTT 545

Query: 243 GHCKNGRIDMAG---DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
            H  N  +DM      +KE   ++ ++   GL P  +TYT L+DG  + GD+  +  I +
Sbjct: 546 PHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILE 605

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M   G   +   +T +I+G C+ G+V EAE++L  M   G+ P+  TYT+++  +  NG
Sbjct: 606 LMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNG 665

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
                   ++ M   G+      Y++L+ G 
Sbjct: 666 KLDRALETVRAMVERGYELNDRIYSSLLQGF 696



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 151/354 (42%), Gaps = 25/354 (7%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G    AS F  ++  +G  L  +    L+     +G   DA+     L K        
Sbjct: 488 KQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPH 547

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               ++D + +       L    +I   G  PSV  +  L+  L + G I  +  + +  
Sbjct: 548 SLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELM 607

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G       +  +ING C+   ++E  +L S M+ SG+ P+  TY+ ++ G     +L
Sbjct: 608 KLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKL 667

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR-IDMAGD---------------MKEA 259
           D A   +  M ERG   ND I+++L+ G   + + ID + +               + E 
Sbjct: 668 DRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECINEL 727

Query: 260 RKIVDEM--CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
             +V+++  C +GL         L+   CKEG  + + D+ + +++RG+ L+  A   ++
Sbjct: 728 ISVVEQLGGCISGL------CIFLVTRLCKEGRTDESNDLVQNVLERGVFLEK-AMDIIM 780

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
             +C   K  +   ++  +LK G  P   ++ +VI    K GD +    L+ E+
Sbjct: 781 ESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERARELVMEL 834


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 206/397 (51%), Gaps = 14/397 (3%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEI 120
           L  L+I    +   D+A+  F  LR+    +PA   C  ++D +++ ++       + E+
Sbjct: 109 LGVLVIALSQMALPDEALSVFGRLRE----LPALPACNAILDGLVKAHMLARVWELFDEM 164

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G  PSV  +N L++    +G +  A  V+D+   R +    V++ T+I   C+   +
Sbjct: 165 LGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCI 224

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            +   L   M+ +GMRP++YTY+AL++   K + +  A +  +++ + GL PNDVIFTTL
Sbjct: 225 GDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTL 284

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           IDG CK  RI       EA+ I  +M    + P    Y  L+ G  + G  + AL   +E
Sbjct: 285 IDGLCKANRI------TEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQE 338

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +I++ +  D    + ++ G C GG++  A R L  M + G+  + A Y ++ID +CK+G+
Sbjct: 339 IIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGN 398

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                     M   G  P V TY++L++G  K+G+++ A  +   M+  GV P+ +TY  
Sbjct: 399 LDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTA 458

Query: 421 LLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLV 454
           L+ GH K+G+ +    LQ    EKG+ S+    + LV
Sbjct: 459 LIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLV 495



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 159/320 (49%), Gaps = 12/320 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + + N  T     +L++  Y  +P+V V+N L+H   + G  ++A   F E  ++ 
Sbjct: 284 LIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKE 343

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     + + ++ G C    +    R   VM+ SG+  +   Y+ LI+  CK   LD+A 
Sbjct: 344 LRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEAL 403

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           +    M E G+ PN V +++LIDGH KNG      +M+ A  I  EM   G+ P+ +TYT
Sbjct: 404 VTCTRMSEVGVEPNVVTYSSLIDGHSKNG------EMEIAMAIYTEMVAKGVEPNVVTYT 457

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE---M 336
            L+ G  K GD+++A  ++KEM ++GI  + +  + L+ G CR  +V +A R + E    
Sbjct: 458 ALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQ 517

Query: 337 LKVGLKPDDA---TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            K    P  A   TY  +I     +G           MR  G +P   TY  ++ GLC  
Sbjct: 518 KKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCML 577

Query: 394 GQLKNANMLLDTMLDLGVVP 413
           G + NA ML   M+ +GV P
Sbjct: 578 GYVLNAMMLYADMVKVGVKP 597



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 12/323 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L FY ++L  G  P+  +F  L+  LCK  +I +A+ +F +  +  +  T   +N+LI+
Sbjct: 262 ALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIH 321

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  ++    E       +    +RPD +T S ++ GLC   ++  A   L  M + G+  
Sbjct: 322 GAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIAL 381

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   +  LID +CK+G +D      EA      M   G+ P+ +TY+ L+DG  K G++E
Sbjct: 382 NAAAYNVLIDEYCKSGNLD------EALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEME 435

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ I  EM+ +G+E + V +TALI G  + G +  A  + +EM + G+  +  T ++++
Sbjct: 436 IAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLV 495

Query: 353 DCFCKNGDTKTGFRLLKE---MRSDGHLPAVE---TYNALMNGLCKHGQLKNANMLLDTM 406
           D  C+    +   R + E    +     P++    TY  L+ GL   GQ   A      M
Sbjct: 496 DGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCM 555

Query: 407 LDLGVVPDDITYNILLEGHCKHG 429
            D G+VPD  TY +++ G C  G
Sbjct: 556 RDSGMVPDRFTYTLVIRGLCMLG 578



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 130/277 (46%), Gaps = 12/277 (4%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G+  +A+  F+ + +   R     C  ++  +       V   F   +   G + +   +
Sbjct: 327 GYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAY 386

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           NVL+ + CK G + +A +      + G+    V++++LI+GH K   ++    + + M  
Sbjct: 387 NVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVA 446

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P+V TY+ALI+G  K   +D A  L  EM E+G+  N +  + L+DG C+  R+  
Sbjct: 447 KGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRV-- 504

Query: 253 AGDMKEARKIVDEMC---TNGLNP---DKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
               ++A + + E      +  NP   + +TY  L+ G   +G    A      M   G+
Sbjct: 505 ----QDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGM 560

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
             D   +T +I G C  G V+ A  +  +M+KVG+KP
Sbjct: 561 VPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 12/243 (4%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           D G +  A +   ++++    + A     LID   ++      L     + + G  P+V 
Sbjct: 360 DGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVV 419

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            ++ L+    K G+++ A  ++ E   +G+    V++  LI+GH K  ++D  F L+  M
Sbjct: 420 TYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEM 479

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT------PNDVIFTTLIDGH 244
           E  G+  +  T S L++GLC+ENR+ DA   + E   +  +       N V + TLI G 
Sbjct: 480 EEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYG- 538

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                + + G   EA      M  +G+ PD+ TYT+++ G C  G + +A+ +  +M+K 
Sbjct: 539 -----LYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKV 593

Query: 305 GIE 307
           G++
Sbjct: 594 GVK 596


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/433 (29%), Positives = 203/433 (46%), Gaps = 23/433 (5%)

Query: 41  SSASLFASILETRGTHLPGLVLD--------ALMIVYVD----LGFLDDAIQCFRLLRKH 88
           SS  LF ++L+ +      +V D        A +  YV     +GF+++AI+ +  L++ 
Sbjct: 126 SSNMLFEALLDAKAVRAAKMVRDIAGFIPDSASLEQYVKCLCGVGFIEEAIEVYFQLKEA 185

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV--LMHKLCKEGKIK 146
             RI    C  ++   ++     +   FY E++  G +       V  L+   C  G++ 
Sbjct: 186 GIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLIQAFCDSGQVA 245

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
               + ++F K GL     ++N LI G C+AKN      +   M      P +YTY  +I
Sbjct: 246 RGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEII 305

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           NGLCK     +A  + +++ +RG  P+ V++TT+I G C+       G   EARK+  EM
Sbjct: 306 NGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCE------MGSFGEARKLWFEM 359

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G+ P+  TY  +L G  K GD E A ++  EM  +G     V    +IS  C  GK 
Sbjct: 360 MDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKS 419

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA  + ++M + G++ D  TY  +I  FCK G       LL E+ +    P+V  Y  L
Sbjct: 420 DEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELL 479

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGL 443
           +   CK G  + A  LL  M   G+ P+  TY+ +L G  K G+ E   +L +E   KG 
Sbjct: 480 IIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGY 539

Query: 444 VSDYACYTSLVSK 456
            +  A    ++S+
Sbjct: 540 GTTTATCNKIISE 552



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 163/323 (50%), Gaps = 7/323 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E++D G  P+ Y +N ++H   K G  + A  +++E   +G   T V+ N +I+  C
Sbjct: 355 LWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELC 414

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                DE F +   M  +G++ D  TY++LI G CKE ++D+   LL+E+  +   P+  
Sbjct: 415 SRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVS 474

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           ++  LI   CK+G      D + A++++ +M + GL+P+  TY  +L G  K GD E   
Sbjct: 475 LYELLIIKSCKDG------DFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVR 528

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  E   +G          +IS  C  GK  EA  M ++M + G+K D  TY  +I  F
Sbjct: 529 ELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGF 588

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G       LL E+ + G  P+  +Y +L+  LC++G  ++A  L   M+  G+ P  
Sbjct: 589 CKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHA 648

Query: 416 ITYNILLEGHCKHGNP-EDFDKL 437
                L+ G CK G   E  D+L
Sbjct: 649 NLREHLISGLCKQGRATEGMDRL 671



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 165/368 (44%), Gaps = 26/368 (7%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------------ 51
           Y+TM+H L       +AR L   ++ K GM  +A  + ++L                   
Sbjct: 336 YTTMIHGLCEMGSFGEARKLWFEMMDK-GMQPNAYTYNTMLHGSLKSGDFERACELYNEM 394

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
             +G     +  + ++      G  D+A + F+ + +   +  A     LI    +    
Sbjct: 395 CNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKV 454

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              +    E++     PSV ++ +L+ K CK+G  + A+ +  +   +GLH  A +++T+
Sbjct: 455 DERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTM 514

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ++G  K+ + +    L +     G      T + +I+ LC   + D+A  +  +M E G+
Sbjct: 515 LHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGI 574

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
             + + + +LI G CK G++       ++  +++E+   GL P   +Y  L+   C+ GD
Sbjct: 575 KADAITYNSLIRGFCKEGKVG------KSMNLLNELVAQGLQPSASSYASLIIQLCQNGD 628

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
            ESA  +  +M+ +GIE        LISG C+ G+  E    L  ML+  +KP  A +  
Sbjct: 629 AESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENKIKPKKAAFED 688

Query: 351 VIDCFCKN 358
           + +C  ++
Sbjct: 689 LAECLIQS 696


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 172/348 (49%), Gaps = 29/348 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G+ PS+     L++  C+  + ++A  + D     G     V +NT+ING CK +
Sbjct: 139 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 198

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    +   ME  G+R D  TY+ LI+GL    R  DA  LL +M +R + PN + FT
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            LID   K G +  A                             G + +A+ + D M + 
Sbjct: 259 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 318

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD +TY  L+ GFCK   +E  + +  EM  +G+  D   +  LI G+C+ GK+  A
Sbjct: 319 GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA 378

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           +++   M+  G+ PD  TY +++DC C NG  +    ++++++       + TYN ++ G
Sbjct: 379 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 438

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           LC+  +LK A  L  ++   GV PD I Y  ++ G C+ G   + DKL
Sbjct: 439 LCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 486



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           + + N   + +  Y ++ + G S  +Y F +L+H  C+  ++  A  +  +  K G   +
Sbjct: 89  IAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPS 148

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V+  +L+NG C+     E   L   M+G G  P+V  Y+ +INGLCK   L++A  + +
Sbjct: 149 IVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFY 208

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
            M ++G+  + V + TLI G   +GR        +A +++ +M    ++P+ I +T L+D
Sbjct: 209 CMEKKGIRADAVTYNTLISGLSNSGR------WTDAARLLRDMVKRKIDPNVIFFTALID 262

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            F KEG+L  A ++ KEMI+R +  +   + +LI+GFC  G + +A+ M   M+  G  P
Sbjct: 263 TFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFP 322

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  TY  +I  FCK+   + G +L  EM   G +    TYN L++G C+ G+L  A  + 
Sbjct: 323 DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           + M+D GV PD +TYNILL+  C +G  E
Sbjct: 383 NRMVDCGVSPDIVTYNILLDCLCNNGKIE 411



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 163/314 (51%), Gaps = 9/314 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F E  +     + V F  ++    K    D    L   ME  G+  D+Y+++
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+ +RL  A  LL +M + G  P+ V   +L++G C+  R       +EA  +V
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNR------FQEAVSLV 172

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M   G  P+ + Y  +++G CK  DL +AL++   M K+GI  D V +  LISG    
Sbjct: 173 DSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNS 232

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A R+LR+M+K  + P+   +T +ID F K G+      L KEM     +P V TY
Sbjct: 233 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 292

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           N+L+NG C HG L +A  + D M+  G  PD +TYN L+ G CK    ED  KL  E   
Sbjct: 293 NSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY 352

Query: 441 KGLVSDYACYTSLV 454
           +GLV D   Y +L+
Sbjct: 353 QGLVGDAFTYNTLI 366



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 160/310 (51%), Gaps = 6/310 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L++A++ F  + K   R  A     LI  +  +   T       +++     P+V  F  
Sbjct: 200 LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+    KEG + +A+ ++ E  +R +     ++N+LING C    L +   +  +M   G
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TY+ LI G CK  R++D   L  EM  +GL  +   + TLI G+C+ G++++A 
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA- 378

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
                +K+ + M   G++PD +TY ILLD  C  G +E AL + +++ K  +++D + + 
Sbjct: 379 -----QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN 433

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            +I G CR  K+ EA  + R + + G+KPD   Y  +I   C+ G  +   +L + M+ D
Sbjct: 434 IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 493

Query: 375 GHLPAVETYN 384
           G +P+   Y+
Sbjct: 494 GFMPSERIYD 503



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 156/338 (46%), Gaps = 41/338 (12%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING--------- 173
           +G+ P+V ++N +++ LCK   + +A  VF    K+G+ A AV++NTLI+G         
Sbjct: 178 FGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTD 237

Query: 174 --------------------------HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
                                       K  NL E   L   M    + P+V+TY++LIN
Sbjct: 238 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 297

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G C    L DA+ +   M  +G  P+ V + TLI G CK+ R++      +  K+  EM 
Sbjct: 298 GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE------DGMKLFCEMT 351

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GL  D  TY  L+ G+C+ G L  A  +   M+  G+  D V +  L+   C  GK+ 
Sbjct: 352 YQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIE 411

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A  M+ ++ K  +  D  TY ++I   C+    K  + L + +   G  P    Y  ++
Sbjct: 412 KALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMI 471

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +GLC+ G  + A+ L   M + G +P +  Y+  L  H
Sbjct: 472 SGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDH 509



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 156/299 (52%), Gaps = 6/299 (2%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +E +G     +  + L+    + G   DA +  R + K            LID  ++   
Sbjct: 210 MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                  Y E++     P+V+ +N L++  C  G + DA+ +FD    +G     V++NT
Sbjct: 270 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 329

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI G CK+K +++G +L   M   G+  D +TY+ LI+G C+  +L+ A+ + + M + G
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 389

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++P+ V +  L+D  C NG+I+      +A  +V+++  + ++ D ITY I++ G C+  
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIE------KALVMVEDLQKSEMDVDIITYNIIIQGLCRTD 443

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
            L+ A  + + + ++G++ D +A+  +ISG CR G   EA+++ R M + G  P +  Y
Sbjct: 444 KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 67/126 (53%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            ++D G SP +  +N+L+  LC  GKI+ A ++ ++  K  +    +++N +I G C+  
Sbjct: 384 RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTD 443

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E + L   +   G++PD   Y  +I+GLC++    +A+ L   M E G  P++ I+ 
Sbjct: 444 KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 503

Query: 239 TLIDGH 244
             +  H
Sbjct: 504 ETLRDH 509


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 200/418 (47%), Gaps = 58/418 (13%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           L  YS++VH L   +   +A   L  +V+K            +L    T+      + L+
Sbjct: 258 LVTYSSVVHALCKARAMGKAEAFLRQMVNK-----------GVLPDNWTY------NNLI 300

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y   G   +A++ F+ +R+H                               IL     
Sbjct: 301 YGYSSTGQWKEAVRVFKEMRRH------------------------------SIL----- 325

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   N+LM  LCK GKIK+A+ VFD    +G +    S+  ++NG+     L +   L
Sbjct: 326 PDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDL 385

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G+ PD+YT+S LI        LD A ++ +EM + G+ P+ V +TT+I   C+
Sbjct: 386 FDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCR 445

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+
Sbjct: 446 IGKMD------DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGM 499

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V F+++I+  C+ G++++A+ +    + VG  PD   Y+M++D +C  G  +   R
Sbjct: 500 RLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALR 559

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +   M S G  P V  Y  L+NG CK G++     L   ML  G+ P  I YNI+++G
Sbjct: 560 VFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 617



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 8/303 (2%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R D+   + L+ G C+  R 
Sbjct: 107 GPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRT 166

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   ++ L+   C  G+   A D+         +C+    PD
Sbjct: 167 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS----PD 222

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + YT ++D F KEGD+  A D+ KEM++RGI  D V +++++   C+   + +AE  LR
Sbjct: 223 VVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLR 282

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+  G+ PD+ TY  +I  +   G  K   R+ KEMR    LP V T N LM  LCK+G
Sbjct: 283 QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYG 342

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
           ++K A  + DTM   G  PD  +Y I+L G+   G   +  D   L    G+  D   ++
Sbjct: 343 KIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFS 402

Query: 452 SLV 454
            L+
Sbjct: 403 VLI 405



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT--AVSFNTLINGHCKAKN 179
           + G  P V+ +++L+  LC +GK   A  +     + G   +   V++ T+I+   K  +
Sbjct: 179 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGD 238

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD+ TYS++++ LCK   +  AE  L +M  +G+ P++  +  
Sbjct: 239 VNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNN 298

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM  + + PD +T  +L+   CK G ++ A D+  
Sbjct: 299 LIYGYSSTGQ------WKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFD 352

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D  ++  +++G+   G +V+   +   ML  G+ PD  T++++I  +   G
Sbjct: 353 TMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCG 412

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GV PD   Y+
Sbjct: 413 MLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 472

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L  E    G+  D   ++S+++   K
Sbjct: 473 CLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCK 515



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 175/373 (46%), Gaps = 46/373 (12%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +  ++    KEG +  A  +F E  +RG+    V+++++++  CKA+ + +   
Sbjct: 220 SPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEA 279

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G+ PD +TY+ LI G     +  +A  +  EM    + P+ V    L+   C
Sbjct: 280 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLC 339

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG---------------- 289
           K G+I      KEAR + D M   G NPD  +Y I+L+G+  +G                
Sbjct: 340 KYGKI------KEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDG 393

Query: 290 -------------------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                               L+ A+ I  EM   G++ D V +T +I+  CR GK+ +A 
Sbjct: 394 IAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAM 453

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
               +M+  G+ PD   Y  +I  FC +G       L+ E+ ++G    +  +++++N L
Sbjct: 454 EKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNL 513

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           CK G++ +A  + D  +++G  PD + Y++L++G+C  G  E     FD + S  G+  +
Sbjct: 514 CKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPN 572

Query: 447 YACYTSLVSKSSK 459
              Y +LV+   K
Sbjct: 573 VVVYGTLVNGYCK 585



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 159/299 (53%), Gaps = 6/299 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D+G  P V  +  ++  LC+ GK+ DA   F++   +G+     +++ LI G C   
Sbjct: 423 EMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 482

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L +   L   +  +GMR D+  +S++IN LCK  R+ DA+ +       G  P+ V+++
Sbjct: 483 SLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYS 542

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG+C      + G M++A ++ D M + G+ P+ + Y  L++G+CK G ++  L + 
Sbjct: 543 MLMDGYC------LVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLF 596

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM+++GI+   + +  +I G    G+ V A+    EM + G+  +  TY +V+  F KN
Sbjct: 597 REMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKN 656

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                   L KE+R+      + T N ++ G+ +  +++ A  L  ++   G+VP  +T
Sbjct: 657 RCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ + + +LM    +  + + A   F +  + GL    +  N L+ G C+AK  DE   
Sbjct: 112 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALD 171

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++YS L+  LC + +   A+ LL  M E G   +P+ V +TT+ID
Sbjct: 172 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVID 231

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              K G ++ A D+        EM   G+ PD +TY+ ++   CK   +  A    ++M+
Sbjct: 232 CFFKEGDVNKACDL------FKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMV 285

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+  DN  +  LI G+   G+  EA R+ +EM +  + PD  T  M++   CK G  K
Sbjct: 286 NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIK 345

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +Y  ++NG    G L +   L D ML  G+ PD  T+++L+
Sbjct: 346 EARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLI 405

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           + +   G  +     F++++ + G+  D   YT++++
Sbjct: 406 KAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYTTVIA 441



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 137/272 (50%), Gaps = 6/272 (2%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G +DDA++ F  +             CLI                LEI++ G    +  
Sbjct: 446 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVF 505

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           F+ +++ LCK G+I DAQ +FD     G H  AV ++ L++G+C    +++  R+   M 
Sbjct: 506 FSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 565

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            +G+ P+V  Y  L+NG CK  R+D+   L  EM ++G+ P+ +++  +IDG      + 
Sbjct: 566 SAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG------LF 619

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           +AG    A+    EM  +G+  +K TY I+L GF K    + A+ + KE+    +++D +
Sbjct: 620 VAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDII 679

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
               +I+G  +  +V EA+ +   + + GL P
Sbjct: 680 TLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 177/341 (51%), Gaps = 25/341 (7%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V   N+L+ KLC +G++ DA+ V +  G     AT +++NT++NG+C+A N+D  
Sbjct: 91  GKDPAVIPCNILIKKLCADGRVADAERVVEALGP---SATIITYNTMVNGYCRAGNIDAA 147

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+   ++     PD +TY+ LI  LC    + DA  +  +M  RG +P+ V ++ L+D 
Sbjct: 148 RRM---IDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDA 204

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK          K+A  ++DEM + G  PD +TY +L++  C +GD+  AL +   +  
Sbjct: 205 TCKE------SGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPS 258

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V +T ++   C   +  EA+++L +M      PD+ T+  VI   C+ G    
Sbjct: 259 YGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGR 318

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA----NMLLDTMLDLGVVPDDITYN 419
             ++L +M   G  P + TY+++M+GLCK  ++  A      LL  M+    +PD +T+N
Sbjct: 319 ATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFN 378

Query: 420 ILLEGHCKHGNPEDFDKL------QSEKGLVSDYACYTSLV 454
            ++   C+ G    FD+        SE G + D   Y  +V
Sbjct: 379 TIITSLCQKGL---FDRAIKVVDEMSEHGCIPDITTYNCIV 416



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 176/350 (50%), Gaps = 14/350 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + ++L  G SPSV  +++L+   CKE   K A ++ DE   +G     V++N LIN
Sbjct: 179 ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLIN 238

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C   ++ E  ++ + +   G +PD  TY+ ++  LC   R ++A+ LL +M      P
Sbjct: 239 AMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAP 298

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           ++V F  +I   C+ G +        A K++ +M  +G  PD ITY+ ++DG CKE  ++
Sbjct: 299 DEVTFNAVITSLCQKGFVG------RATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVD 352

Query: 293 SALDIRK----EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
            A+ + K    EM+ +    D V F  +I+  C+ G    A +++ EM + G  PD  TY
Sbjct: 353 EAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTY 412

Query: 349 TMVIDCF-CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
             ++D F CK+  T+    LL  M S+G  P   TY +L  GL +  +++ A  +   + 
Sbjct: 413 NCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQ 472

Query: 408 DLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
            +G+ PD + YN +L G CK    +   DF       G + D + Y  LV
Sbjct: 473 AMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILV 522



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 36/321 (11%)

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           N  + G  +   LD   RL   + GSG  P V   + LI  LC + R+ DAE ++  +  
Sbjct: 65  NRRLRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEAL-- 122

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMA--------------------------GDMKEARK 261
            G +   + + T+++G+C+ G ID A                          G + +A  
Sbjct: 123 -GPSATIITYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALA 181

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           + D+M   G +P  +TY+ILLD  CKE   + A+ +  EM  +G E D V +  LI+  C
Sbjct: 182 VFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMC 241

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             G V EA ++L  +   G KPD  TYT V+   C +   +   +LL +M S+   P   
Sbjct: 242 SQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEV 301

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE- 440
           T+NA++  LC+ G +  A  +L  M + G  PD ITY+ +++G CK    ++  KL  E 
Sbjct: 302 TFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKEL 361

Query: 441 ------KGLVSDYACYTSLVS 455
                 K  + D   + ++++
Sbjct: 362 LAEMVSKNCIPDQVTFNTIIT 382



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 142/299 (47%), Gaps = 15/299 (5%)

Query: 114 LGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  L++L+    YG  P    +  ++  LC   + ++A  +  +          V+FN 
Sbjct: 246 VGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNA 305

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA----ELLLHEM 225
           +I   C+   +    ++ + M   G  PD+ TYS++++GLCKE R+D+A    + LL EM
Sbjct: 306 VITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEM 365

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             +   P+ V F T+I   C+ G  D       A K+VDEM  +G  PD  TY  ++DGF
Sbjct: 366 VSKNCIPDQVTFNTIITSLCQKGLFD------RAIKVVDEMSEHGCIPDITTYNCIVDGF 419

Query: 286 -CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK    E ALD+   M+  G+  D   + +L  G  R  ++  A  M R +  +GL PD
Sbjct: 420 LCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPD 479

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              Y  ++   CK   T         M S+G +P   TY  L+ G+   G L+ A  LL
Sbjct: 480 KMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELL 538


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 194/349 (55%), Gaps = 13/349 (3%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL-HATAVSFNTLINGHCKAKN 179
           L  G   +V  FN L+  L  E K+ DA ++F +  +  +     V + T++NG  K  +
Sbjct: 124 LKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGH 183

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            ++   L  +ME    +PDV TYS +I+ LCK+  LD A  LL+EM ++ + PN   + +
Sbjct: 184 TEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNS 243

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LIDG CK       G  ++ + ++ EM    +NP+  T++IL+DG CKEG +E A ++ +
Sbjct: 244 LIDGLCK------LGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMR 297

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            MI++G+E D + ++A++ G+C  G+V  A R+   +   G+KP+  +Y+++I+ +CK  
Sbjct: 298 HMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKK 357

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +     +L  E+   G  P   TY+ +++GL + G++ +A  + D ML +G  PD   ++
Sbjct: 358 NLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHS 417

Query: 420 ILLEGHCKHGNPED----FDKLQ--SEKGLVSDYACYTSLVSKSSKYRQ 462
            LL G+ K+G  E+    F KL+   E   +S Y    + + K+ + R+
Sbjct: 418 TLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVRE 466



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 187/313 (59%), Gaps = 7/313 (2%)

Query: 118 LEILDYGYS-PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           L I++ G + P V  +++++  LCK+  +  A  + +E  ++ +     ++N+LI+G CK
Sbjct: 191 LRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCK 250

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
               ++   L S M    + P+V+T+S LI+GLCKE +++DA+ ++  M E+G+ P+ + 
Sbjct: 251 LGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIIT 310

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           ++ ++DG+C  G++D       AR++ + +   G+ P+  +Y+IL++G+CK+ +L  A+ 
Sbjct: 311 YSAIMDGYCLRGQVD------RARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQ 364

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  E+ ++G++ D V ++ ++ G    G++ +A+++  EML+VG  PD   ++ ++  + 
Sbjct: 365 LFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYF 424

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G  +    L  ++  +     +  Y  ++NGLCK+ +++ A+ + + +  +G++PD  
Sbjct: 425 KYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVR 484

Query: 417 TYNILLEGHCKHG 429
           TYN+++ G C+ G
Sbjct: 485 TYNVMITGFCREG 497



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 171/305 (56%), Gaps = 8/305 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++   +P+V+ F++L+  LCKEGK++DA  V     ++G+    ++++ +++G+C   
Sbjct: 263 EMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRG 322

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D   R+ +V+   G++P++++YS LING CK+  L  A  L  E+ ++GL P+ V ++
Sbjct: 323 QVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYS 382

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T++ G  + GRI   GD   A+KI DEM   G  PD   ++ LL G+ K G +E A+ + 
Sbjct: 383 TILHGLIEVGRI---GD---AKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLF 436

Query: 299 KEMIKRGIELDNVAF-TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            ++ +R  E  N++F T +I+G C+  +V EA  +  ++  +GL PD  TY ++I  FC+
Sbjct: 437 SKL-ERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCR 495

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G       +L++M  +G      TYN +M G  +  ++      +  M   G   D  T
Sbjct: 496 EGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATT 555

Query: 418 YNILL 422
             +L+
Sbjct: 556 TGVLI 560



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 174/332 (52%), Gaps = 10/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PSV  F+ L   +           +F E    G+  +    N + N +C    +D  F +
Sbjct: 60  PSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSV 119

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIFTTLIDGHC 245
             +   +G+  +V T++ L+ GL  EN++ DA +L  ++  E+   PN+V++ T+++G  
Sbjct: 120 LPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLS 179

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G  +      +   ++  M      PD  TY+I++D  CK+ +L++A+++  EM ++ 
Sbjct: 180 KRGHTE------KTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKN 233

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  +   + +LI G C+ G+  + + +L EM+ + + P+  T++++ID  CK G  +   
Sbjct: 234 IPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDAD 293

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +++ M   G  P + TY+A+M+G C  GQ+  A  + + + D G+ P+  +Y+IL+ G+
Sbjct: 294 EVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGY 353

Query: 426 CKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           CK  N     +L    S+KGL  D   Y++++
Sbjct: 354 CKKKNLAKAMQLFGEISQKGLKPDTVTYSTIL 385



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 41/274 (14%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G  P +  ++ +M   C  G++  A+ VF+    +G+     S++ LING+CK KN
Sbjct: 299 MIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKN 358

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP------- 232
           L +  +L   +   G++PD  TYS +++GL +  R+ DA+ +  EM   G TP       
Sbjct: 359 LAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHST 418

Query: 233 ----------------------------NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
                                       N   +T +I+G CKN R+      +EA  I +
Sbjct: 419 LLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRV------REAHAIFE 472

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           ++ + GL PD  TY +++ GFC+EG  +    I ++M   G   +N+ +  ++ GF R  
Sbjct: 473 KLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSN 532

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K+ E    ++EM   G   D  T  ++I+   +N
Sbjct: 533 KISEIVSFMKEMAGRGFSFDATTTGVLINVLKEN 566



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           IN   +   LD+   L   M      P V  +S L   +           L  EM   G+
Sbjct: 34  INFDKEVSCLDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGI 93

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
             +D I   + + +C   RID A        ++      G+  + +T+  LL G   E  
Sbjct: 94  PISDSILNIVTNSYCLRHRIDCAFS------VLPIYLKTGIPFNVVTFNTLLGGLFAENK 147

Query: 291 LESALDIRKEMIKRGI-ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           +  A+ + K++++  I E + V +  +++G  + G   +   +LR M +   KPD  TY+
Sbjct: 148 VTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYS 207

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           +VID  CK+ +      LL EM+     P + TYN+L++GLCK GQ +    LL  M++L
Sbjct: 208 IVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNL 267

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
            + P+  T++IL++G CK G  ED D++     EKG+  D   Y++++
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIM 315



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           +G     +   A+M  Y   G +D A + F +LR    +        LI+   +      
Sbjct: 302 KGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAK 361

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  + EI   G  P    ++ ++H L + G+I DA+ +FDE  + G        +TL+ 
Sbjct: 362 AMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLF 421

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+ K   ++E   L S +E +    ++  Y+ +INGLCK +R+ +A  +  ++   GL P
Sbjct: 422 GYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIP 481

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   +  +I G C+ G  D      E + I+ +M  NG   + ITY +++ GF +   + 
Sbjct: 482 DVRTYNVMITGFCREGLFD------EVKGILRKMEDNGCPANNITYNVIMQGFFRSNKIS 535

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             +   KEM  RG   D      LI+       +V+
Sbjct: 536 EIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIVD 571


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 167/343 (48%), Gaps = 34/343 (9%)

Query: 118 LEILDYGYS----PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +EIL +  S    P+   +N L+  LCKE  ++ A  +      +G+     +FN+LI G
Sbjct: 357 VEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQG 416

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C   N +    L   M+  G  PD +TYS LI  LC E RL +A +LL EM   G   N
Sbjct: 417 LCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARN 476

Query: 234 DVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEARKIVD 264
            V++ TLIDG CKN R+  A D+                             +EA +++D
Sbjct: 477 VVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMD 536

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   GL PDK TYT +L  FC++GD++ A DI + M   G E D V +  LI G C+ G
Sbjct: 537 QMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAG 596

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +V  A ++LR +   G+      Y  VI   CK   TK   RL +EM   G  P V TY 
Sbjct: 597 RVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYK 656

Query: 385 ALMNGLCKHG-QLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            +  GLC  G  ++ A      ML+ G++P+  ++  L EG C
Sbjct: 657 IVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLC 699



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 199/431 (46%), Gaps = 61/431 (14%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G + +AL  +Y + GF  D +                    L++ + RT      L    
Sbjct: 283 GRIEEALRFIYEEEGFCPDQVTF----------------NALVNGLCRTGHIKQGLEMMD 326

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            +L+ G+   VY +N L+  LCK G+I +A  +      R      V++NTLI   CK  
Sbjct: 327 FMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKEN 386

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +++    L  V+   G+ PDV T+++LI GLC  +  + A  L  EM E+G  P++  ++
Sbjct: 387 HVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYS 446

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+  C   R      +KEA  ++ EM  +G   + + Y  L+DG CK   +  A DI 
Sbjct: 447 ILIESLCSERR------LKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIF 500

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M   G+   +V +  LI+G C+  +V EA +++ +M+  GLKPD  TYT ++  FC+ 
Sbjct: 501 DQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQ 560

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT------------- 405
           GD K    +++ M  +G  P + TY  L+ GLCK G++  A+ LL +             
Sbjct: 561 GDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAY 620

Query: 406 ----------------------MLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQS 439
                                 M++ G  PD ITY I+  G C  G P     DF     
Sbjct: 621 NPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEML 680

Query: 440 EKGLVSDYACY 450
           EKG++ ++  +
Sbjct: 681 EKGILPEFPSF 691



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 168/336 (50%), Gaps = 11/336 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           +YG  P    F  LM    +E  ++ A  + +   + G   T+VS N L+NG CK   ++
Sbjct: 227 NYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIE 286

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E  R   + E  G  PD  T++AL+NGLC+   +     ++  M E+G   +   + +LI
Sbjct: 287 EALRF--IYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLI 344

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G CK G ID      EA +I+  M +    P+ +TY  L+   CKE  +E+A ++ + +
Sbjct: 345 SGLCKLGEID------EAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVL 398

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             +G+  D   F +LI G C       A  +  EM + G  PD+ TY+++I+  C     
Sbjct: 399 TSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRL 458

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           K    LLKEM   G    V  YN L++GLCK+ ++ +A  + D M  LGV    +TYN L
Sbjct: 459 KEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTL 518

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + G CK    E+  +L  +   +GL  D   YT+++
Sbjct: 519 INGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTML 554



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 154/313 (49%), Gaps = 8/313 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F L   D+   P    +NV +  L K  K+K  + +  +     +     +FN LI   C
Sbjct: 151 FLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALC 210

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  L     +   M   G+RPD  T++ L+ G  +E  ++ A  +   M E G     V
Sbjct: 211 KAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSV 270

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
               L++G CK GRI+ A      R I +E    G  PD++T+  L++G C+ G ++  L
Sbjct: 271 SVNVLVNGLCKEGRIEEA-----LRFIYEE---EGFCPDQVTFNALVNGLCRTGHIKQGL 322

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++   M+++G ELD   + +LISG C+ G++ EA  +L  M+    +P+  TY  +I   
Sbjct: 323 EMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTL 382

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK    +    L + + S G LP V T+N+L+ GLC     + A  L + M + G  PD+
Sbjct: 383 CKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDE 442

Query: 416 ITYNILLEGHCKH 428
            TY+IL+E  C  
Sbjct: 443 FTYSILIESLCSE 455



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 168/336 (50%), Gaps = 13/336 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD-EG 183
           YS    VF+ L+ +L + G       +  +     +     +F   +  +  + +L  E 
Sbjct: 88  YSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEI 147

Query: 184 FRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             L  +ME    ++PD   Y+  ++ L K N+L   E L  +M    + P+   F  LI 
Sbjct: 148 NPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIR 207

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CK      A  ++ A  ++++M   GL PD+ T+T L+ GF +E D+E AL I++ M+
Sbjct: 208 ALCK------AHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMV 261

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + G EL +V+   L++G C+ G++ EA R + E  + G  PD  T+  +++  C+ G  K
Sbjct: 262 ESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIK 319

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            G  ++  M   G    V TYN+L++GLCK G++  A  +L  M+     P+ +TYN L+
Sbjct: 320 QGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLI 379

Query: 423 EGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
              CK  + E   +  ++ + KG++ D   + SL+ 
Sbjct: 380 GTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQ 415



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 146/286 (51%), Gaps = 9/286 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G + +V V+N L+  LCK  ++ DA+ +FD+    G+  ++V++NTLING CK+K ++E 
Sbjct: 472 GCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEA 531

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M   G++PD +TY+ ++   C++  +  A  ++  M   G  P+ V + TLI G
Sbjct: 532 AQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGG 591

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR+D+A       K++  +   G+      Y  ++   CK    + A+ + +EM++
Sbjct: 592 LCKAGRVDVAS------KLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMME 645

Query: 304 RGIELDNVAFTALISGFCRGG-KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +G   D + +  +  G C GG  + EA     EML+ G+ P+  ++  + +  C      
Sbjct: 646 KGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMED 705

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T  +L+  +   G     ET  +++ G  K  +  +A   L  +LD
Sbjct: 706 TLIQLINMVMEKGRFSQSET--SIIRGFLKIQKFNDALANLGAILD 749


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 174/316 (55%), Gaps = 7/316 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P V+ +  ++  LC+ G+I  A  +  E  + G+  T V++N L++  CK+  ++E FR
Sbjct: 208 APDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFR 267

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           LK  M    +RP + T+  LI+GL +  +  +   +L EM   G+TPN+VI+  +I  HC
Sbjct: 268 LKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHC 327

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G         EA K+ DEM + G+    +TY ++    CKEG++E A  I  EM+  G
Sbjct: 328 RKGHCS------EALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAG 381

Query: 306 IELDNVAFTALISGFCRG-GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           + +    F ++++   RG G++    R++REML   LKP+DA  T  I   CK+G  +  
Sbjct: 382 MMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEA 441

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +  ++   G    V T NAL++GLC+   +K A  +L  M++ GV  D ITYNI+++G
Sbjct: 442 AEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQG 501

Query: 425 HCKHGNPEDFDKLQSE 440
            CK    ++  +L+ +
Sbjct: 502 CCKASKMDEAIQLRDD 517



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 161/312 (51%), Gaps = 6/312 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++L  G   +V   N L+H LC+   +K+A  V       G+    +++N +I G C
Sbjct: 444 IWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCC 503

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  +DE  +L+  M   G +PD++T++  ++  C   ++++   LL +M   GL P+ V
Sbjct: 504 KASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIV 563

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T+IDG+CK      A DM +A + + E+  NGL P+ + Y  L+ G+ + G++  A+
Sbjct: 564 TYGTIIDGYCK------AKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAI 617

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            I   M   GI+   V + +L+   C  G V E + +  + +   ++     YT++I  F
Sbjct: 618 GILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGF 677

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G         KEM S G  P   TY  LM    K G  + A+ L D M+ LG+VPD 
Sbjct: 678 CKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDS 737

Query: 416 ITYNILLEGHCK 427
           ++YN L+ G C+
Sbjct: 738 VSYNTLISGFCE 749



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 164/322 (50%), Gaps = 7/322 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E++  G   +V  +N++   LCKEG+++ A+ + DE    G+      FN+++ 
Sbjct: 335 ALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVA 394

Query: 173 GHCKAKN-LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            H +    LD   RL   M    ++P+    +A I  LCK  + ++A  +  ++  +GL 
Sbjct: 395 WHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLG 454

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
            N      LI G C+        +MKEA K++  M  +G+  D+ITY I++ G CK   +
Sbjct: 455 VNVATSNALIHGLCQ------GNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKM 508

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A+ +R +MIKRG + D   F   +  +C  GKV E   +L +M   GLKPD  TY  +
Sbjct: 509 DEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTI 568

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID +CK  D       L E+  +G  P    YNAL+ G  ++G + +A  +LDTM   G+
Sbjct: 569 IDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGI 628

Query: 412 VPDDITYNILLEGHCKHGNPED 433
            P  +TYN L+   C  G  E+
Sbjct: 629 QPTPVTYNSLMYWMCHAGLVEE 650



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 170/340 (50%), Gaps = 9/340 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L     P+  +    + +LCK GK ++A  ++ +   +GL     + N LI+G C+  
Sbjct: 412 EMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGN 471

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ E  ++   M  SG+  D  TY+ +I G CK +++D+A  L  +M +RG  P+   F 
Sbjct: 472 NMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFN 531

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
             +  +C  G+++      E   ++D+M + GL PD +TY  ++DG+CK  D+  A +  
Sbjct: 532 IFLHTYCNLGKVE------EILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYL 585

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E++K G+  + V + ALI G+ R G + +A  +L  M   G++P   TY  ++   C  
Sbjct: 586 TELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHA 645

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    +  +         V  Y  ++ G CK G++  A M    M   G+ P+ +TY
Sbjct: 646 GLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTY 705

Query: 419 NILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVS 455
             L+  + K GN E+  KL  E    G+V D   Y +L+S
Sbjct: 706 TTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLIS 745



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 41/270 (15%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G+ P ++ FN+ +H  C  GK+++   + D+    GL    V++ T+I+G+CKAK
Sbjct: 517 DMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAK 576

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF- 237
           ++ +     + +  +G+RP+   Y+ALI G  +   + DA  +L  M   G+ P  V + 
Sbjct: 577 DMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYN 636

Query: 238 ----------------------------------TTLIDGHCKNGRIDMAGDMKEARKIV 263
                                             T +I G CK G+ID      EA    
Sbjct: 637 SLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKID------EAVMYF 690

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM + G+ P+K+TYT L+  + K G+ E A  +  EM+  GI  D+V++  LISGFC  
Sbjct: 691 KEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEV 750

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVID 353
             + +      EM    LK D  +Y   +D
Sbjct: 751 DSLDKMVESPAEMSSQVLKQDGCSYNAFVD 780



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDGHCKNG 248
           +   G  P + T S L+  L    +LD A  +  EM + + + P+   +T +I   C+ G
Sbjct: 166 LSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAG 225

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            ID A  M      + E+  +G+ P  +TY +L+D  CK G +E A  ++  M++  +  
Sbjct: 226 EIDAAFAM------LAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRP 279

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V F  LISG  RG +  E   +L+EM   G+ P++  Y  +I   C+ G      +L 
Sbjct: 280 SIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLF 339

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            EM S G    V TYN +   LCK G++++A  +LD ML  G++     +N ++  H +
Sbjct: 340 DEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLR 398



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 10/219 (4%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +  E++  G  P+  ++N L+    + G I DA  + D     G+  T V++N+L+   C
Sbjct: 584 YLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMC 643

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            A  ++E   + +      +   V  Y+ +I G CK  ++D+A +   EM  RG+ PN +
Sbjct: 644 HAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKM 703

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +TTL+  + K+G      + +EA K+ DEM + G+ PD ++Y  L+ GFC+   L+  +
Sbjct: 704 TYTTLMFAYSKSG------NKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMV 757

Query: 296 DIRKEMIKRGIELDNVAFTALISG----FCRGGKVVEAE 330
           +   EM  + ++ D  ++ A + G    +C+   V  AE
Sbjct: 758 ESPAEMSSQVLKQDGCSYNAFVDGITTPWCQKEAVSNAE 796


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 175/322 (54%), Gaps = 8/322 (2%)

Query: 108 NLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           +L  V  GF +  +I   G+ P    F  L+  LC EGKI +A  +FD+    G     V
Sbjct: 121 HLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGV 180

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++ TLI+G CK  N     RL   M      P+V TY+ +I+ L K+ ++++A  +  EM
Sbjct: 181 TYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEM 240

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             +G++PN   + ++I G CK        + K    +++EM  + + P+ + +T L+D  
Sbjct: 241 IAKGISPNVSTYNSIIHGLCK------FSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CKEG +  A D+   MI+RG+E D V +TAL+ G C   ++ EA+++   M++ G  P+ 
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNV 354

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            +Y+ +I+ +CK         L +EM     +P + TYN L++GLC  G+L++A  L   
Sbjct: 355 ISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHE 414

Query: 406 MLDLGVVPDDITYNILLEGHCK 427
           M+  G +PD +TY ILL+  CK
Sbjct: 415 MVASGQIPDLVTYRILLDYLCK 436



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 177/358 (49%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +       L  + E++  G SP+V  +N ++H LCK  + K    + +E     
Sbjct: 220 IIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSK 279

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V F TL++  CK   +     +  VM   G+ PDV TY+AL++G C  + +D+A+
Sbjct: 280 IMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEAD 339

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  PN + ++TLI+G+CK  RID      +A  + +EMC   L P+ +TY 
Sbjct: 340 KVFDTMVRKGCAPNVISYSTLINGYCKIQRID------KAMYLFEEMCQRELVPNIVTYN 393

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C  G L  A+ +  EM+  G   D V +  L+   C+   + +A  ML+ +   
Sbjct: 394 TLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L PD  +Y +VID  C+ G+ +    L   + S G  P V TY  ++NGLC  G L  A
Sbjct: 454 NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEA 513

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             L   M   G  PDD TYN++  G  ++       +L  E   +G  +D +  T +V
Sbjct: 514 TKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIV 571



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 156/314 (49%), Gaps = 29/314 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D    P+V +F  L+  LCKEG +  A  V D   +RG+    V++  L++GHC   
Sbjct: 274 EMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRS 333

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++   M   G  P+V +YS LING CK  R+D A  L  EMC+R L PN V + 
Sbjct: 334 EMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYN 393

Query: 239 TLIDGHCKNGRIDMA-------------GDMKEARKIVDEMCT----------------N 269
           TLI G C  GR+  A              D+   R ++D +C                 +
Sbjct: 394 TLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            L PD  +Y I++DG C+ G+LE+A D+   +  +G+  D   +T +I+G C  G + EA
Sbjct: 454 NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEA 513

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++ REM   G  PDD TY ++   F +N +T +  +LL+EM   G      T   ++  
Sbjct: 514 TKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEM 573

Query: 390 LCKHGQLKNANMLL 403
           L   G  ++   +L
Sbjct: 574 LSDDGLDQSVKQIL 587



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V F  ++      K+      L   M+  G+  DVYT + +IN  C  NR+D    +L
Sbjct: 73  SVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVL 132

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            ++ + G  P+   FTTLI G C  G+I       EA  + D+M   G  P+ +TY  L+
Sbjct: 133 AKIFKLGHQPDTATFTTLIRGLCVEGKIG------EALHLFDKMVGEGFQPNGVTYGTLI 186

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            G CK G+  +A+ + + M+++  E + + +  +I    +  +V EA  +  EM+  G+ 
Sbjct: 187 HGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGIS 246

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+ +TY  +I   CK  + K    L+ EM     +P V  +  L++ LCK G +  A+ +
Sbjct: 247 PNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDV 306

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           +D M+  GV PD +TY  L++GHC     ++ DK+      KG   +   Y++L++   K
Sbjct: 307 VDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCK 366

Query: 460 YRQ 462
            ++
Sbjct: 367 IQR 369



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 159/332 (47%), Gaps = 11/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PSV  F  ++  +           +  +    G+ +   +   +IN  C    +D GF +
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + +   G +PD  T++ LI GLC E ++ +A  L  +M   G  PN V + TLI G CK
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G+ + A +++  M      P+ ITY  ++D   K+  +  AL+I  EMI +GI
Sbjct: 192 ------VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGI 245

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   + ++I G C+  +      ++ EM+   + P+   +T ++D  CK G       
Sbjct: 246 SPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHD 305

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           ++  M   G  P V TY ALM+G C   ++  A+ + DTM+  G  P+ I+Y+ L+ G+C
Sbjct: 306 VVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYC 365

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           K    +     F+++  ++ LV +   Y +L+
Sbjct: 366 KIQRIDKAMYLFEEM-CQRELVPNIVTYNTLI 396



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 145/303 (47%), Gaps = 6/303 (1%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+GM + A     ++  RG     +   ALM  +     +D+A + F  + +        
Sbjct: 296 KEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVI 355

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+   +       +  + E+      P++  +N L+H LC  G+++DA  +F E 
Sbjct: 356 SYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEM 415

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G     V++  L++  CK ++LD+   +   +EGS + PD+ +Y+ +I+G+C+   L
Sbjct: 416 VASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGEL 475

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           + A  L   +  +GL P+   +T +I+G C      + G + EA K+  EM T+G +PD 
Sbjct: 476 EAAGDLFSSLSSKGLHPDVWTYTIMINGLC------LQGLLAEATKLFREMNTDGCSPDD 529

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY ++  GF +  +  SA+ + +EM+ RG   D    T ++      G     +++L E
Sbjct: 530 CTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHE 589

Query: 336 MLK 338
            ++
Sbjct: 590 FVQ 592



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 3/195 (1%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P  + +  +L          + L + K+M   GI  D      +I+ FC   +V     +
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L ++ K+G +PD AT+T +I   C  G       L  +M  +G  P   TY  L++GLCK
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G  + A  LL +M+     P+ ITYN +++   K     +   + SE   KG+  + + 
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 450 YTSLVSKSSKYRQKR 464
           Y S++    K+ + +
Sbjct: 252 YNSIIHGLCKFSEWK 266


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 8/310 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +N L+H LC +GK+  A  + ++          V++ T+ING  K +  ++G
Sbjct: 298 GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDG 357

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   ME  G + + Y YS+LI+GL KE + ++A  L  EM E+G  PN V++   IDG
Sbjct: 358 VHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDG 417

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C++ + D      EA  I+ EM + G  P+  TY+ L+ GF K+GD + A+ + KEM+ 
Sbjct: 418 LCRDEKPD------EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMS 471

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +  + V  + L++G C  G++ EA  +   ML  GLKPD   Y+ +I   C  G    
Sbjct: 472 QDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDK 531

Query: 364 GFRLLKEM--RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           G +L  EM  +     P V TYN L N LC+   L  A  LL++MLD G  PD +T NI 
Sbjct: 532 GLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIF 591

Query: 422 LEGHCKHGNP 431
           LE   +  NP
Sbjct: 592 LETLRERINP 601



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 175/352 (49%), Gaps = 32/352 (9%)

Query: 111 TVTLGFYLEIL---DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           +    FYL +      G+ P++  +N+++  LCK G+I  A   F E   +  +    ++
Sbjct: 177 SYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTY 236

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           +TL+NG CK + +DE   L   M+  G  P+  T++ LI+ L K   L  A  L+  M  
Sbjct: 237 STLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFL 296

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMA------------------------GDMKEARK-- 261
           +G  PN+V + TLI G C  G++D A                        G +K+ R   
Sbjct: 297 KGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAED 356

Query: 262 ---IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
              I+  M   G   ++  Y+ L+ G  KEG  E+A+ + KEM ++G + + V + A I 
Sbjct: 357 GVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFID 416

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G CR  K  EAE +L+EML  G  P+  TY+ ++  F K GD++    + KEM S     
Sbjct: 417 GLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRH 476

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            V   + L+NGLC+ G+L+ A  +   ML  G+ PD + Y+ +++G C  G+
Sbjct: 477 NVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGS 528



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 165/331 (49%), Gaps = 10/331 (3%)

Query: 106 RTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFG--KRGLH 161
           + +LP   + F+  +  D     +V  FN +++ + +EG    A +     FG   +G  
Sbjct: 136 KAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQ 195

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
              +++N +I   CK   +D        M      PDV+TYS L+NGLCKE R+D+A  L
Sbjct: 196 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 255

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L EM   G  PN V F  LID   KNG      D+  A K+VD M   G  P+++TY  L
Sbjct: 256 LDEMQAEGCLPNPVTFNVLIDALSKNG------DLSRAAKLVDNMFLKGCVPNEVTYNTL 309

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G C +G L+ AL + ++M+      + V +  +I+G  +  +  +   +L  M + G 
Sbjct: 310 IHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 369

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           K ++  Y+ +I    K G ++   RL KEM   G  P V  Y A ++GLC+  +   A  
Sbjct: 370 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 429

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +L  ML  G +P+  TY+ L++G  K G+ +
Sbjct: 430 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQ 460



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 32/365 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ---MVFDEFGKRGLHATAV------- 165
           FY  I +Y  S   +  + ++ ++ +EG++       ++F   GK  L   AV       
Sbjct: 92  FYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMA 151

Query: 166 ----------SFNTLINGHCKAKNLDEGFRLKSVMEGS---GMRPDVYTYSALINGLCKE 212
                     SFN+++N   +  +    F+    + G+   G +P++ TY+ +I  LCK 
Sbjct: 152 NDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKL 211

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            ++D A     EM  +   P+   ++TL++G CK  R+D      EA  ++DEM   G  
Sbjct: 212 GQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD------EAVFLLDEMQAEGCL 265

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+ +T+ +L+D   K GDL  A  +   M  +G   + V +  LI G C  GK+ +A  +
Sbjct: 266 PNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL 325

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L +M+     P+  TY  +I+   K    + G  +L  M   G       Y++L++GL K
Sbjct: 326 LEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFK 385

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G+ +NA  L   M + G  P+ + Y   ++G C+   P++ + +  E   KG + +   
Sbjct: 386 EGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFT 445

Query: 450 YTSLV 454
           Y+SL+
Sbjct: 446 YSSLM 450



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           + G  P+ +TY +++   CK G ++ A+D  +EM  +    D   ++ L++G C+  +V 
Sbjct: 191 SKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD 250

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA  +L EM   G  P+  T+ ++ID   KNGD     +L+  M   G +P   TYN L+
Sbjct: 251 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 310

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLV 444
           +GLC  G+L  A  LL+ M+    VP+ +TY  ++ G  K    ED   +     E+G  
Sbjct: 311 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 370

Query: 445 SDYACYTSLVS 455
           ++   Y+SL+S
Sbjct: 371 ANEYIYSSLIS 381



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 158/372 (42%), Gaps = 46/372 (12%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++H L       +A  LL  +VS K + +          T GT + GLV       
Sbjct: 305 TYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQV--------TYGTIINGLVKQRRA-- 354

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                  +D +     + +   +        LI  + +       +  + E+ + G  P+
Sbjct: 355 -------EDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 407

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V V+   +  LC++ K  +A+ +  E   +G    A ++++L+ G  K  +  +   +  
Sbjct: 408 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWK 467

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    MR +V   S L+NGLC+  RL +A  +   M   GL P+ V ++++I G C  G
Sbjct: 468 EMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVG 527

Query: 249 RIDMAGDMKEARKIVDEM-CTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            +D      +  K+  EM C    + PD +TY IL +  C++ +L  A+D+   M+  G 
Sbjct: 528 SVD------KGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGC 581

Query: 307 ELDNVA---------------------FTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           + D++                         L+    +  + + A R++ EML   L P+ 
Sbjct: 582 DPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEP 641

Query: 346 ATYTMVIDCFCK 357
           +T++ VI   CK
Sbjct: 642 STWSRVIQRTCK 653



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 83/347 (23%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y T+++ LV  +   +A D +H+++S              +E RG      +  +L+  
Sbjct: 340 TYGTIINGLVKQR---RAEDGVHILMS--------------MEERGQKANEYIYSSLISG 382

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEIL 121
               G  ++A++ ++        +  +GC+         ID + R   P        E+L
Sbjct: 383 LFKEGKSENAVRLWK-------EMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 435

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G+ P+ + ++ LM    K+G  + A +V+ E   + +    V  + L+NG C++  L 
Sbjct: 436 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLR 495

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM-CERGLT-PNDVIFTT 239
           E   + + M G G++PDV  YS++I GLC    +D    L +EM C+   + P+ V +  
Sbjct: 496 EALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNI 555

Query: 240 LIDGHCKNGRIDMAGDM------------------------------------------- 256
           L +  C+   +  A D+                                           
Sbjct: 556 LFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVR 615

Query: 257 --KEARK-----IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
             K  RK     IV+EM    L P+  T++ ++   CK   +   +D
Sbjct: 616 LLKRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRETID 662


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 191/394 (48%), Gaps = 44/394 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   +  L +++   + +IL  GY P+   FN L+  LC +G I  A    D+   +G
Sbjct: 102 LINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQG 161

Query: 160 LHATAVSFNTLING-----------------------------------HCKAKNLDEGF 184
            H   VS+ TLING                                    CKAK +++ F
Sbjct: 162 FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAF 221

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L S M    + PDV+TY+ALI+G    ++L+ A  L ++M +  + PN   F  L+DG 
Sbjct: 222 DLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGF 281

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G+++      +A+ ++  M  + + PD +TY  L+DG+C    +  A DI   M   
Sbjct: 282 CKEGKVN------DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASG 335

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  +   +T +++GFC+   V EA  +  EM    + P+  TY+ +ID  CK G     
Sbjct: 336 GVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYA 395

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +L+ EM   G  P + TY+++++ LCK+  +  A  LL  + D G+ PD  TY IL++G
Sbjct: 396 LKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKG 455

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            C+ G  ED   +  +   KG   D   YT ++ 
Sbjct: 456 LCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQ 489



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 155/287 (54%), Gaps = 6/287 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+VY FN+L+   CKEGK+ DA++V     K  +    V++N+L++G+C    +++   
Sbjct: 268 NPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKD 327

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+  +V  Y+ ++NG CK   +D+A  L  EM  R + PN V +++LIDG C
Sbjct: 328 IFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLC 387

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GRI  A       K+VDEM   G  P+ +TY+ +LD  CK   ++ A+ +   +  +G
Sbjct: 388 KLGRIFYA------LKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQG 441

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  D   +T LI G C+ G++ +A+ +  ++L  G   D   YT++I  FC  G      
Sbjct: 442 IRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKAL 501

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            LL +M  +G +P  +TY  ++  L +  +   A  LL  M+  G++
Sbjct: 502 ALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGLL 548



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 188/386 (48%), Gaps = 6/386 (1%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   +  +G HL  +    L+     +G +  A+Q  + +     +  A  
Sbjct: 144 KGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVM 203

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID M +  L       Y +++     P V+ +N L+       K+  A  +F++  
Sbjct: 204 YNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMK 263

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K  ++    +FN L++G CK   +++   + ++M    ++PDV TY++L++G C  N+++
Sbjct: 264 KENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVN 323

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ +   M   G+  N  I+TT+++G CK   +D      EA  + +EM    + P+ +
Sbjct: 324 KAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVD------EAINLFEEMRCRKIIPNVV 377

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY+ L+DG CK G +  AL +  EM  RG   + V +++++   C+   V +A  +L  +
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL 437

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G++PD  TYT++I   C++G  +    + +++   G+   V  Y  ++ G C  G  
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFF 497

Query: 397 KNANMLLDTMLDLGVVPDDITYNILL 422
             A  LL  M D G +P+  TY +++
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVI 523



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 168/396 (42%), Gaps = 67/396 (16%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN------------- 172
           +P  + FN ++  L K      A  +  +    G+ +   +FN LIN             
Sbjct: 58  TPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFS 117

Query: 173 ----------------------GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
                                 G C   ++ +       +   G   D  +Y  LINGLC
Sbjct: 118 IFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLC 177

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK----NGRIDMAGDMKEARKIVDEM 266
           K  R+  A  LL  +  + + PN V++  +ID  CK    N   D+   M   R   D  
Sbjct: 178 KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVF 237

Query: 267 CTNGL-------------------------NPDKITYTILLDGFCKEGDLESALDIRKEM 301
             N L                         NP+  T+ IL+DGFCKEG +  A  +   M
Sbjct: 238 TYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIM 297

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +K  I+ D V + +L+ G+C   KV +A+ +   M   G+  +   YT +++ FCK    
Sbjct: 298 MKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMV 357

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                L +EMR    +P V TY++L++GLCK G++  A  L+D M D G  P+ +TY+ +
Sbjct: 358 DEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSI 417

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           L+  CK+ + +    L +   ++G+  D   YT L+
Sbjct: 418 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILI 453



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P +Y + +L+  LC+ G+++DAQ VF++   +G +    ++  +I G C     D
Sbjct: 439 DQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFD 498

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +   L S ME +G  P+  TY  +I  L +++  D AE LL EM  RGL
Sbjct: 499 KALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 195/379 (51%), Gaps = 50/379 (13%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I+  GY P V  +  L+  LC E +I +A  +F    K G     V++ TLI G C+  N
Sbjct: 152 IMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGN 211

Query: 180 LDEGFRL-KSVMEGSG-----MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           ++   +L + ++ G+       +P++++Y+ +I+ LCK  +  +A+ L +EM ++G+ P+
Sbjct: 212 INLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPD 271

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F+ LID  CK G +       EA+K ++ M   G+ PD  T+T L++GFC  GDL+S
Sbjct: 272 VVTFSALIDTLCKEGMVI------EAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDS 325

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY----- 348
           A ++   M  +G E D +++T LI G+C+   V EA ++  EML+VG  PD  T+     
Sbjct: 326 AKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLK 385

Query: 349 ------------------------------TMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
                                         ++ +D  CKNG       L  E++S     
Sbjct: 386 GLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKL 445

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD--- 435
            +E++N L++GLCK  +L+ A  L + +   G+ PD +TY I++ G CK+G  ++ +   
Sbjct: 446 DIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILF 505

Query: 436 KLQSEKGLVSDYACYTSLV 454
           ++  E G   +   Y++L+
Sbjct: 506 QMMEENGCTPNLLTYSALL 524



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 165/315 (52%), Gaps = 10/315 (3%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGK---RGLHATAVSFNTLINGHCKAKNLDEGF 184
           S+  FN+L+  L    KIK    VF  + K    GL     + N LIN  C    + EG 
Sbjct: 90  SIISFNLLLGAL---AKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGL 146

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
              + +   G  PDV TY++LI GLC E+R+ +A  L   M + G  PN V + TLI G 
Sbjct: 147 SAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGL 206

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLESALDIRKEMI 302
           C+ G I++A  +K  +++++      +N  P+  +Y I++D  CK G  + A  +  EM+
Sbjct: 207 CRTGNINLA--LKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMV 264

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+  D V F+ALI   C+ G V+EA++ L  M+  G+ PD  T+T +I+ FC  GD  
Sbjct: 265 DQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLD 324

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +   L   M S G+ P V +Y  L+ G CK   ++ A  L + ML +G  PD  T+ +LL
Sbjct: 325 SAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLL 384

Query: 423 EGHCKHGNPEDFDKL 437
           +G    G   D  KL
Sbjct: 385 KGLFLAGKVGDAKKL 399



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 182/381 (47%), Gaps = 54/381 (14%)

Query: 89  YFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILD----YGYS--PSVYVFNVL 135
           + R+   GC         LI  + RT    + L  + E+L+    Y  +  P+++ +N++
Sbjct: 184 FIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNII 243

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           + +LCK GK K+A+ +F+E   +G+    V+F+ LI+  CK   + E  +    M   G+
Sbjct: 244 IDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGI 303

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PD++T+++LI G C    LD A+ L   M  +G  P+ + +T LI G+CK   ++    
Sbjct: 304 VPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVE---- 359

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILL--------------------------------- 282
             EA K+ +EM   G  PD  T+ +LL                                 
Sbjct: 360 --EAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSV 417

Query: 283 --DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
             DG CK G L  A+++  E+    ++LD  +F  LI G C+  K+  A  +  ++ + G
Sbjct: 418 FLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEG 477

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L+PD  TY ++I+ FCKNG       L + M  +G  P + TY+AL++G  K+ +L+   
Sbjct: 478 LQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVV 537

Query: 401 MLLDTMLDLGVVPDDITYNIL 421
            LL  M+   V      Y I+
Sbjct: 538 KLLHKMIQKDVSLAASIYTIV 558



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 157/308 (50%), Gaps = 17/308 (5%)

Query: 140 CKEGKIKDAQMV-FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
           CK+G I   Q + F +   R +    +SFN L+    K K+  + F L   M  +G+ P+
Sbjct: 70  CKKGNITSTQALQFFDLMMRSI----ISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPN 125

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
            +T + LIN LC  NR+ +    +  +  RG  P+ V +T+LI G C   RI       E
Sbjct: 126 FFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRIS------E 179

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR------GIELDNVA 312
           A ++   M   G  P+ +TY  L+ G C+ G++  AL + +EM+          + +  +
Sbjct: 180 ATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFS 239

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  +I   C+ GK  EA+R+  EM+  G++PD  T++ +ID  CK G      + L+ M 
Sbjct: 240 YNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMM 299

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G +P + T+ +L+ G C  G L +A  L  +M   G  PD I+Y +L+ G+CK  N E
Sbjct: 300 LRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVE 359

Query: 433 DFDKLQSE 440
           +  KL +E
Sbjct: 360 EAMKLYNE 367



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 140/322 (43%), Gaps = 64/322 (19%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G  P V  F+ L+  LCKEG + +A+   +    RG+     +F +LI G C   
Sbjct: 262 EMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVG 321

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP------ 232
           +LD    L   M   G  PDV +Y+ LI G CK   +++A  L +EM   G  P      
Sbjct: 322 DLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFC 381

Query: 233 -----------------------------NDVIFTTLIDGHCKNG--------------- 248
                                        N  I +  +DG CKNG               
Sbjct: 382 VLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSY 441

Query: 249 --RIDM------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             ++D+            A  ++ A ++ +++   GL PD +TY I+++GFCK G +++A
Sbjct: 442 NMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNA 501

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + + M + G   + + ++AL+ GF +  K+ E  ++L +M++  +    + YT+V D 
Sbjct: 502 NILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDM 561

Query: 355 FCKNGDTKTGFRLLKEMRSDGH 376
             K+   +    +L+      H
Sbjct: 562 VSKDEKCREWLDILQRFPVQKH 583



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 87/170 (51%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G + DA + F +++ H        C   +D + +       +  + E+  Y     +  F
Sbjct: 391 GKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESF 450

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L+  LCK  K++ A  +F++  + GL    V++  +ING CK   +D    L  +ME 
Sbjct: 451 NCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEE 510

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           +G  P++ TYSAL++G  K N+L++   LLH+M ++ ++    I+T + D
Sbjct: 511 NGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVED 560


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 219/462 (47%), Gaps = 68/462 (14%)

Query: 59  GLVLDALMIVYVDLGF--LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL----PT- 111
           G + DAL  +    GF    DA+    LL  H  +      R L+ RM R  +    PT 
Sbjct: 222 GTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTY 281

Query: 112 -------VTLGFYLE-------ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
                    LG+  +       +  YG+ P +  +NVL   LC+ GK+ +A  + DE  +
Sbjct: 282 NTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMER 341

Query: 158 RGLH-ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
            G      V++NTL++   K +   +  RL   M   G++P + T++ ++  LCKE +L+
Sbjct: 342 LGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLE 401

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN---- 272
           +A   L ++ E GL P+ + + TLID +CK      AG++ +A  ++DEM   GL     
Sbjct: 402 EALGKLEKIAEEGLAPDVITYNTLIDAYCK------AGNVAKAFTLMDEMVGKGLKMDTF 455

Query: 273 -------------------------------PDKITYTILLDGFCKEGDLESALDIRKEM 301
                                          PD+++Y  ++  + KE + E AL +  +M
Sbjct: 456 TLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQM 515

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           I+R +      +  LI G CR  ++ EA   L E ++ GL PD+ TY ++I  +CK GD 
Sbjct: 516 IERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDL 575

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +  FR   +M  +   P V T N LMNGLC HG+L  A  L ++ ++ G   D ITYN L
Sbjct: 576 ENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTL 635

Query: 422 LEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           ++  CK G+ +     FD ++  KGL  D   Y  ++S  S+
Sbjct: 636 IQSMCKVGDVDTALHFFDDMEV-KGLQPDAFTYNVVLSALSE 676



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 175/354 (49%), Gaps = 10/354 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +    +  L    E+ D G  P++   N+++  LCKEGK+++A    ++  + G
Sbjct: 355 LVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG 414

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++NTLI+ +CKA N+ + F L   M G G++ D +T + ++  LCK  R +DAE
Sbjct: 415 LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAE 474

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LLH   +RG  P++V + T++  + K        + + A ++ D+M    L P   TY 
Sbjct: 475 ELLHSPPQRGFVPDEVSYGTVMAAYFKEY------NPEPALRLWDQMIERKLIPSISTYN 528

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C+   L+ A+D   E +++G+  D   +  +I  +C+ G +  A R   +M++ 
Sbjct: 529 TLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVEN 588

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
             KPD  T   +++  C +G      +L +     G    V TYN L+  +CK G +  A
Sbjct: 589 SFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTA 648

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
               D M   G+ PD  TYN++L    + G  E+      KL     L   +AC
Sbjct: 649 LHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFAC 702



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 42/290 (14%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   L  + ++++    PS+  +N L+  LC+  ++K+A    +EF ++GL     ++N 
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNI 564

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+ +CK  +L+  FR  + M  +  +PDV T + L+NGLC   +LD A  L     E+G
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
              + + + TLI   CK       GD+  A    D+M   GL PD  TY ++L    + G
Sbjct: 625 KKVDVITYNTLIQSMCK------VGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAG 678

Query: 290 DLESA-----------------------------LDIRKEMIKRGIE-----LDNVAFTA 315
             E A                              D+++   K   E      DN   T 
Sbjct: 679 RSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETY 738

Query: 316 L--ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +  ++G C GG++ EA+ +L EM++ G+  D +TY  +++   K    +T
Sbjct: 739 MERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGLIKRQKRQT 788



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 4/174 (2%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           +++LD+ + +I+  +  ++  F  L+   C  G + +A   L  M   GL PD  TY  +
Sbjct: 190 QASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  C+ G       LL  M+ DG  P   TYN L++   + G +K A  ++++M   G 
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQSEK----GLVSDYACYTSLVSKSSKYR 461
            PD  TYN+L  G C+ G  ++  +L+ E       + D   Y +LV    K+R
Sbjct: 310 EPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWR 363



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 22/240 (9%)

Query: 59  GLVLDA-----LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           GLV D      ++  Y   G L++A +    + ++ F+     C  L++ +         
Sbjct: 554 GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKA 613

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  +   ++ G    V  +N L+  +CK G +  A   FD+   +GL   A ++N +++ 
Sbjct: 614 LKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSA 673

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE---MCERGL 230
             +A   +E   +   +  SG     +        L K +  D+A++  HE     E   
Sbjct: 674 LSEAGRSEEAHNMLHKLADSGKLSQSFACP-----LLKPSSADEADVKEHEGKPEAESSE 728

Query: 231 TPNDVIFTTL---IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
              D    T    ++G C  G+      +KEA+ ++DEM   G+  D  TY  L++G  K
Sbjct: 729 KAQDNALETYMERLNGLCTGGQ------LKEAKAVLDEMMQKGMPVDCSTYITLMEGLIK 782


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 8/310 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +N L+H LC +GK+  A  + ++          V++ T+ING  K +  ++G
Sbjct: 274 GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDG 333

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   ME  G + + Y YS+LI+GL KE + ++A  L  EM E+G  PN V++   IDG
Sbjct: 334 VHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDG 393

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C++ + D      EA  I+ EM + G  P+  TY+ L+ GF K+GD + A+ + KEM+ 
Sbjct: 394 LCRDEKPD------EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMS 447

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +  + V  + L++G C  G++ EA  +   ML  GLKPD   Y+ +I   C  G    
Sbjct: 448 QDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDK 507

Query: 364 GFRLLKEM--RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           G +L  EM  +     P V TYN L N LC+   L  A  LL++MLD G  PD +T NI 
Sbjct: 508 GLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIF 567

Query: 422 LEGHCKHGNP 431
           LE   +  NP
Sbjct: 568 LETLRERINP 577



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 175/352 (49%), Gaps = 32/352 (9%)

Query: 111 TVTLGFYLEIL---DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           +    FYL +      G+ P++  +N+++  LCK G+I  A   F E   +  +    ++
Sbjct: 153 SYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTY 212

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           +TL+NG CK + +DE   L   M+  G  P+  T++ LI+ L K   L  A  L+  M  
Sbjct: 213 STLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFL 272

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMA------------------------GDMKEARK-- 261
           +G  PN+V + TLI G C  G++D A                        G +K+ R   
Sbjct: 273 KGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAED 332

Query: 262 ---IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
              I+  M   G   ++  Y+ L+ G  KEG  E+A+ + KEM ++G + + V + A I 
Sbjct: 333 GVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFID 392

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           G CR  K  EAE +L+EML  G  P+  TY+ ++  F K GD++    + KEM S     
Sbjct: 393 GLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRH 452

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            V   + L+NGLC+ G+L+ A  +   ML  G+ PD + Y+ +++G C  G+
Sbjct: 453 NVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGS 504



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 165/331 (49%), Gaps = 10/331 (3%)

Query: 106 RTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFG--KRGLH 161
           + +LP   + F+  +  D     +V  FN +++ + +EG    A +     FG   +G  
Sbjct: 112 KAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQ 171

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
              +++N +I   CK   +D        M      PDV+TYS L+NGLCKE R+D+A  L
Sbjct: 172 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 231

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L EM   G  PN V F  LID   KNG      D+  A K+VD M   G  P+++TY  L
Sbjct: 232 LDEMQAEGCLPNPVTFNVLIDALSKNG------DLSRAAKLVDNMFLKGCVPNEVTYNTL 285

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G C +G L+ AL + ++M+      + V +  +I+G  +  +  +   +L  M + G 
Sbjct: 286 IHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 345

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           K ++  Y+ +I    K G ++   RL KEM   G  P V  Y A ++GLC+  +   A  
Sbjct: 346 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 405

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +L  ML  G +P+  TY+ L++G  K G+ +
Sbjct: 406 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQ 436



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 32/365 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ---MVFDEFGKRGLHATAV------- 165
           FY  I +Y  S   +  + ++ ++ +EG++       ++F   GK  L   AV       
Sbjct: 68  FYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMA 127

Query: 166 ----------SFNTLINGHCKAKNLDEGFRLKSVMEGS---GMRPDVYTYSALINGLCKE 212
                     SFN+++N   +  +    F+    + G+   G +P++ TY+ +I  LCK 
Sbjct: 128 NDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKL 187

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            ++D A     EM  +   P+   ++TL++G CK  R+D      EA  ++DEM   G  
Sbjct: 188 GQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD------EAVFLLDEMQAEGCL 241

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+ +T+ +L+D   K GDL  A  +   M  +G   + V +  LI G C  GK+ +A  +
Sbjct: 242 PNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL 301

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L +M+     P+  TY  +I+   K    + G  +L  M   G       Y++L++GL K
Sbjct: 302 LEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFK 361

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G+ +NA  L   M + G  P+ + Y   ++G C+   P++ + +  E   KG + +   
Sbjct: 362 EGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFT 421

Query: 450 YTSLV 454
           Y+SL+
Sbjct: 422 YSSLM 426



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           + G  P+ +TY +++   CK G ++ A+D  +EM  +    D   ++ L++G C+  +V 
Sbjct: 167 SKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD 226

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA  +L EM   G  P+  T+ ++ID   KNGD     +L+  M   G +P   TYN L+
Sbjct: 227 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 286

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLV 444
           +GLC  G+L  A  LL+ M+    VP+ +TY  ++ G  K    ED   +     E+G  
Sbjct: 287 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 346

Query: 445 SDYACYTSLVS 455
           ++   Y+SL+S
Sbjct: 347 ANEYIYSSLIS 357



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 158/372 (42%), Gaps = 46/372 (12%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++H L       +A  LL  +VS K + +          T GT + GLV       
Sbjct: 281 TYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQV--------TYGTIINGLVKQRRA-- 330

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                  +D +     + +   +        LI  + +       +  + E+ + G  P+
Sbjct: 331 -------EDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 383

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V V+   +  LC++ K  +A+ +  E   +G    A ++++L+ G  K  +  +   +  
Sbjct: 384 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWK 443

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    MR +V   S L+NGLC+  RL +A  +   M   GL P+ V ++++I G C  G
Sbjct: 444 EMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVG 503

Query: 249 RIDMAGDMKEARKIVDEM-CTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            +D      +  K+  EM C    + PD +TY IL +  C++ +L  A+D+   M+  G 
Sbjct: 504 SVD------KGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGC 557

Query: 307 ELDNVA---------------------FTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           + D++                         L+    +  + + A R++ EML   L P+ 
Sbjct: 558 DPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEP 617

Query: 346 ATYTMVIDCFCK 357
           +T++ VI   CK
Sbjct: 618 STWSRVIQRTCK 629



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 83/347 (23%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y T+++ LV  +   +A D +H+++S              +E RG      +  +L+  
Sbjct: 316 TYGTIINGLVKQR---RAEDGVHILMS--------------MEERGQKANEYIYSSLISG 358

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEIL 121
               G  ++A++ ++        +  +GC+         ID + R   P        E+L
Sbjct: 359 LFKEGKSENAVRLWK-------EMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 411

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G+ P+ + ++ LM    K+G  + A +V+ E   + +    V  + L+NG C++  L 
Sbjct: 412 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLR 471

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM-CERGLT-PNDVIFTT 239
           E   + + M G G++PDV  YS++I GLC    +D    L +EM C+   + P+ V +  
Sbjct: 472 EALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNI 531

Query: 240 LIDGHCKNGRIDMAGDM------------------------------------------- 256
           L +  C+   +  A D+                                           
Sbjct: 532 LFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVR 591

Query: 257 --KEARK-----IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
             K  RK     IV+EM    L P+  T++ ++   CK   +   +D
Sbjct: 592 LLKRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRETID 638


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 175/329 (53%), Gaps = 9/329 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P+      LM  LC +G+++ +    D+   +G     VS+ TL+NG CK  
Sbjct: 112 KILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIG 171

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +   ++E S    +V  Y+ +I+GLCK+  +++A     EM  RG+ PN + +T
Sbjct: 172 ETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYT 231

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C      +AG +  A  +++EM    +NP+  TY IL+D  CKEG ++ A ++ 
Sbjct: 232 TLIGGFC------LAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLL 285

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM  RG   D V +T+L+ GFC+   + +A  +  +M + G++P+  TYT +ID  CK 
Sbjct: 286 AEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKG 345

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  K   +L +++   G    V TYN ++ GLCK G L  A  +   M D G +P+ +T+
Sbjct: 346 GRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTF 405

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLV 444
            I++    K    +  +KL  E   KGL+
Sbjct: 406 EIIIRSLFKKDENDKAEKLLHEMIAKGLL 434



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 183/385 (47%), Gaps = 17/385 (4%)

Query: 75  LDDAIQCFR--LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           +DDAI  F   LL  H   I   G        M+     ++L   +E+   G  P++   
Sbjct: 33  VDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEV--KGIEPNLVTL 90

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+L++  C  G++  +  V  +  K G     ++  TL+ G C    + +       +  
Sbjct: 91  NILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVA 150

Query: 193 SGMRPDVYTYSALINGLCK--ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
            G + +  +Y  L+NGLCK  E R     L + E    GL  N V++ T+IDG CK+  +
Sbjct: 151 QGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGL--NVVMYNTIIDGLCKDKLV 208

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           +      EA     EM   G+ P+ ITYT L+ GFC  G L  A  +  EMI + I  + 
Sbjct: 209 N------EAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNV 262

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +  LI   C+ GKV EA+ +L EM   G   D  TYT ++D FCKN +      L  +
Sbjct: 263 YTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMK 322

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M+  G  P   TY AL++GLCK G+LK+A  L   +L  G   D  TYN+++ G CK G 
Sbjct: 323 MKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGM 382

Query: 431 PEDFDKLQSEKGLVSDYACYTSLVS 455
               D+  + K  + D  C  ++V+
Sbjct: 383 ---LDEALAIKSKMEDNGCIPNVVT 404



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
             ++++ ++G  P+ Y +  L+  LCK G++KDAQ +F +   +G      ++N +I G 
Sbjct: 318 ALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGL 377

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           CK   LDE   +KS ME +G  P+V T+  +I  L K++  D AE LLHEM  +GL
Sbjct: 378 CKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGL 433


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 230/493 (46%), Gaps = 57/493 (11%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILET--RGTHLPGL 60
           R+T H Y      L   KMHSQA  LL HL ++  G   SA +F+S+L T  R    P L
Sbjct: 102 RIT-HIYCMAAQILTQAKMHSQAMSLLKHLAMT--GFSCSA-VFSSLLCTISRCDSNP-L 156

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V D L+  YV    + DA      +    F+  A  C  +++ ++          F  E 
Sbjct: 157 VFDLLVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHVWFFLKEG 216

Query: 121 LDYGYS----------------------------------PSVYVFNVLMHKLCKEGKIK 146
           L   +                                   P+V  +N ++H   K+G+ K
Sbjct: 217 LVRKFPLDVTTCNIVLNSMCIEGNLKGAKHMIHKMKSCSLPNVITYNTILHWYVKKGRFK 276

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
            A  V ++  K G+ A   ++N +I+  CK K     + L   M G  + PD  TY+ LI
Sbjct: 277 AAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLI 336

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
            G   E+++  A  + +EM  +GL P+   +TTLIDG+C+NG ID      EA +++ EM
Sbjct: 337 KGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTID------EALRVLYEM 390

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G+ P ++TY+ +L+G   E     A  +   M K G   D   +  L+ G C+GG +
Sbjct: 391 QVAGVKPSEVTYSAMLNGSVHE-----AFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHL 445

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
           V+A+  +  ++ +    D  T   ++   C +G       L ++M +   +P + TY  L
Sbjct: 446 VQAKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTIL 505

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKG 442
           ++G C+ G++  A +LL  ML+ G+VPD +TY  LL+G  K G  +     F ++  ++G
Sbjct: 506 LSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEG 565

Query: 443 LVSDYACYTSLVS 455
           + +D   Y S+++
Sbjct: 566 MYADCIAYNSMMN 578



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 215/446 (48%), Gaps = 57/446 (12%)

Query: 55  THLPGLV----LDALMIVYVDLGFLDDAIQ-CFRLLRKHYFRIP-ARGCRCLIDRMMRTN 108
            H+P  +    L+AL++   + G LD+A+  C +++  ++  IP       L+    R  
Sbjct: 456 VHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINF--IPDIHTYTILLSGFCRKG 513

Query: 109 --LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAV 165
             +P V L     +L+ G  P +  +  L+  L KEG++K A  +F E   K G++A  +
Sbjct: 514 KIVPAVIL--LQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCI 571

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N+++NG+ KA  L +       M  + + P+  +Y+ L++G  K+  L  +  L  +M
Sbjct: 572 AYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDM 631

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             +G+ P +V +  LI G  K+G I++A       K +D+M   G+ PD++++ +L++ F
Sbjct: 632 VRKGIKPTNVTYRLLILGLSKHGMIEIA------VKFLDKMVLEGIYPDRLSFDVLINAF 685

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            ++  +  AL +   M    +   +  ++A+I+G  R   +  +  +LR+M++ GL+P  
Sbjct: 686 SEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKH 745

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-------------------------- 379
             Y  +I+  C+ GD    FRL +EM + G +PA                          
Sbjct: 746 THYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCS 805

Query: 380 ---------VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
                    + T+  LM+GLCK  ++ +A  L   M   G+  D +TYN+L+ G CK   
Sbjct: 806 IIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQC 865

Query: 431 PEDFDKLQSE---KGLVSDYACYTSL 453
             D  +L  E   KGL  +   YT+L
Sbjct: 866 VSDALELYEEMKSKGLRPNVTTYTTL 891



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 157/315 (49%), Gaps = 12/315 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  PS+  +  L+   C+ G I +A  V  E    G+  + V+++ ++NG     
Sbjct: 354 EMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNG----- 408

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++ E F +   ME  G  PDVYTY  L+ GLCK   L  A+  +  +       +     
Sbjct: 409 SVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLN 468

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+ G C +G +D      EA  + ++M T    PD  TYTILL GFC++G +  A+ + 
Sbjct: 469 ALLLGICNHGSLD------EALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILL 522

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDATYTMVIDCFCK 357
           + M+++G+  D V +T L+ G  + G+V  A  + +E++ K G+  D   Y  +++ + K
Sbjct: 523 QMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLK 582

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G        + +M  +   P   +YN LM+G  K G L  +  L   M+  G+ P ++T
Sbjct: 583 AGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVT 642

Query: 418 YNILLEGHCKHGNPE 432
           Y +L+ G  KHG  E
Sbjct: 643 YRLLILGLSKHGMIE 657



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 157/324 (48%), Gaps = 9/324 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +N+LMH   K+G +  +  ++ +  ++G+  T V++  LI G  K   ++   + 
Sbjct: 603 PNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKF 662

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+ PD  ++  LIN   +++R+ DA  L + M    ++P+   ++ +I+G  +
Sbjct: 663 LDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIR 722

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              +  + D      ++ +M  +GL P    Y  L++  C+ GD+  A  +++EM   GI
Sbjct: 723 KNWLQHSCD------VLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGI 776

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               VA ++++ G  + GKV E   +   +++ G+ P  AT+T ++   CK         
Sbjct: 777 VPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALH 836

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L   M S G    V TYN L+ GLCK   + +A  L + M   G+ P+  TY  L E   
Sbjct: 837 LKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIY 896

Query: 427 KHGNPEDFDKLQS---EKGLVSDY 447
             G   + +KL +   ++GLV  Y
Sbjct: 897 GTGRTLEGEKLLNDIEDRGLVPSY 920



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 140/320 (43%), Gaps = 52/320 (16%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL L +SK GM   A  F   +   G +   L  D L+  + +   + DA+Q F  ++  
Sbjct: 645 LLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWL 704

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC-------- 140
           Y    ++    +I+ ++R N    +     ++++ G  P    +  L++  C        
Sbjct: 705 YMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGA 764

Query: 141 ---------------------------KEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
                                      K GK+++  +VF    + G+  T  +F TL++G
Sbjct: 765 FRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHG 824

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK   + +   LKS+ME  G++ DV TY+ LI GLCK   + DA  L  EM  +GL PN
Sbjct: 825 LCKEAKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPN 884

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              +TTL +     GR        E  K+++++   GL P   +YT      C E  +E+
Sbjct: 885 VTTYTTLTEAIYGTGRT------LEGEKLLNDIEDRGLVP---SYT----DQCPEWRMEN 931

Query: 294 ALDIRKEMI---KRGIELDN 310
           A+D R  MI   ++G   +N
Sbjct: 932 AMD-RLNMIRNCRKGTAFNN 950


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 172/322 (53%), Gaps = 6/322 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+   +  L    +  Y ++   G  P+VY +N ++ + C +GK+ +A  +FDE  +RG
Sbjct: 227 LINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERG 286

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++NTLI G C+ + + E  RL   M+  G+ P++ +Y+ LI+G C    LD A 
Sbjct: 287 VACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKAS 346

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L ++M   G +P+   +  LI G  +        DM      V EM   GL+P K+TYT
Sbjct: 347 SLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM------VREMEARGLSPSKVTYT 400

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           IL+D   +  ++E A  I   M K G+  D   +  LI G C  G + EA ++ + + ++
Sbjct: 401 ILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 460

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            LKP+D  Y  +I  +CK G +    RLLKEM  +G +P V +YN+ +  LCK  +   A
Sbjct: 461 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEA 520

Query: 400 NMLLDTMLDLGVVPDDITYNIL 421
            +LL  M++LG+ P    +N++
Sbjct: 521 EVLLKDMIELGLKPSISIWNMI 542



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 208/410 (50%), Gaps = 27/410 (6%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFR------LLRKHYFRIPARGCRCLIDRMMRTNL 109
           +PG    + L+I+ +   F + A + F        L  + F I  +GC C +  + +   
Sbjct: 114 VPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGC-CEVGYLDK--- 169

Query: 110 PTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
                GF +  ++ + G SP+V V+  L+   CK G I+  + +F + G+  + A   ++
Sbjct: 170 -----GFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTY 224

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             LING  K     +G  L   M+ +G+ P+VYTY+++I   C + +L++A  L  EM E
Sbjct: 225 TVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRE 284

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           RG+  N V + TLI G C+  R+       EA +++  M  +GL+P+ I+Y  L+DG+C 
Sbjct: 285 RGVACNVVTYNTLIGGLCQERRV------LEAERLMCRMKRDGLSPNLISYNTLIDGYCS 338

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G+L+ A  +  +M   G       +  LI+GF           M+REM   GL P   T
Sbjct: 339 IGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVT 398

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           YT+++D   ++ + +  F++   M   G +  +  Y  L++GLC  G +K A+ L  ++ 
Sbjct: 399 YTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLD 458

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           ++ + P+D+ YN ++ G+CK G+     +L     E G+V + A Y S +
Sbjct: 459 EMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 508



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 180/360 (50%), Gaps = 10/360 (2%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             +I+  +R+ LP   L +  +++  G  P    FN L+  L K    + A  VF+E  K
Sbjct: 86  EAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TK 144

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
             +     SF  +I G C+   LD+GF +   ME  G+ P+V  Y+ LI+G CK   ++ 
Sbjct: 145 GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIER 204

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
            + L ++M E  +  N   +T LI+G  K       G  K+  ++ ++M   G+ P+  T
Sbjct: 205 GKQLFYKMGELDVVANQYTYTVLINGFFK------MGLKKDGIELYEKMKLTGIVPNVYT 258

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  ++   C +G L +A ++  EM +RG+  + V +  LI G C+  +V+EAER++  M 
Sbjct: 259 YNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMK 318

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + GL P+  +Y  +ID +C  G+      L  +M+S G  P++ TYN L+ G  +     
Sbjct: 319 RDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSA 378

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
               ++  M   G+ P  +TY IL++   +  N E   ++ S   + GLV+D   Y  L+
Sbjct: 379 GVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 438



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 136/306 (44%), Gaps = 53/306 (17%)

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL------------------ 240
           V  + A+IN   +    + A    ++M  RGL P    F  L                  
Sbjct: 82  VLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN 141

Query: 241 ----------------IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
                           I G C+ G +D      +  +++ +M   GL+P+ + YT L+DG
Sbjct: 142 ETKGNVKLDVYSFGIMIKGCCEVGYLD------KGFEVLGQMEEMGLSPNVVVYTTLIDG 195

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVA----FTALISGFCRGGKVVEAERMLREMLKVG 340
            CK GD+E      K++  +  ELD VA    +T LI+GF + G   +   +  +M   G
Sbjct: 196 CCKNGDIERG----KQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG 251

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  TY  +I   C +G     F L  EMR  G    V TYN L+ GLC+  ++  A 
Sbjct: 252 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAE 311

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSK 456
            L+  M   G+ P+ I+YN L++G+C  GN +     F++++S  G     A Y  L++ 
Sbjct: 312 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKS-SGQSPSLATYNILIAG 370

Query: 457 SSKYRQ 462
            S+ + 
Sbjct: 371 FSEAKN 376


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 195/383 (50%), Gaps = 10/383 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +D+A+  F  ++        R    LI  +  +   +  L    E+ + G  P+++ + V
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTV 363

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+  LC + K++ A+ +  +  ++GL    +++N LING+CK   +++   +  +ME   
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +RP+  TY+ LI G CK N +  A  +L++M ER + P+ V + +LIDG C++G  D   
Sbjct: 424 LRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFD--- 479

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
               A +++  M   GL PD  TYT ++D  CK   +E A D+   + ++ +  + V +T
Sbjct: 480 ---SAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYT 536

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI G+C+ GKV EA  ML +ML     P+  T+  +I   C +G  K    L ++M   
Sbjct: 537 ALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKI 596

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
              P V T   L++ L K G   +A      ML  G  PD  TY   ++ +C+ G  +D 
Sbjct: 597 DLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDA 656

Query: 435 DKLQS---EKGLVSDYACYTSLV 454
           + + +   E G+  D   Y+SL+
Sbjct: 657 EDMVAKMKENGVSPDLFTYSSLI 679



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 191/394 (48%), Gaps = 42/394 (10%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G    A+ + S++   G         +L++ Y     LD A + F+        +P +
Sbjct: 230 KVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFK-------EMPLK 282

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           GCR       R  +                      +  L+H LC E +I +A  +F + 
Sbjct: 283 GCR-------RNEV---------------------AYTHLIHGLCVERRIDEAMDLFVKM 314

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
                + T  ++  LI   C ++   E   L   ME  G++P+++TY+ LI+ LC + +L
Sbjct: 315 KDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKL 374

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           + A  LL +M E+GL PN + +  LI+G+CK G I+ A D      +V+ M +  L P+ 
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALD------VVELMESRNLRPNT 428

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  L+ G+CK  ++  A+ +  +M++R +  D V + +LI G CR G    A R+L  
Sbjct: 429 RTYNELIKGYCKR-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   GL PD  TYT +ID  CK+   +    L   +     +P V  Y AL++G CK G+
Sbjct: 488 MNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGK 547

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +  A+++L+ ML    +P+ +T+N L+ G C  G
Sbjct: 548 VNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDG 581



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 192/364 (52%), Gaps = 13/364 (3%)

Query: 96  GC-RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           GC   L++ + R  L       Y+E+L+    P++Y +N +++  CK G +++A      
Sbjct: 184 GCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSM 243

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             + GL     ++ +LI G+C+ K+LD  F++   M   G R +   Y+ LI+GLC E R
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR 303

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           +D+A  L  +M +    P    +T LI   C + R        EA  +V EM   G+ P+
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSER------KSEALNLVKEMEEKGIKPN 357

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TYT+L+D  C +  LE A ++  +M+++G+  + + + ALI+G+C+ G + +A  ++ 
Sbjct: 358 IHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVE 417

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M    L+P+  TY  +I  +CK  +      +L +M     LP V TYN+L++G C+ G
Sbjct: 418 LMESRNLRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSG 476

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACY 450
              +A  LL  M D G+VPD  TY  +++  CK    E+    FD L+ +K ++ +   Y
Sbjct: 477 NFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLE-QKDVIPNVVMY 535

Query: 451 TSLV 454
           T+L+
Sbjct: 536 TALI 539



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 172/307 (56%), Gaps = 7/307 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L+ G  P+V  +N L++  CK G I+DA  V +    R L     ++N LI G+CK +
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK-R 441

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+ +   + + M    + PDV TY++LI+G C+    D A  LL  M +RGL P+   +T
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYT 501

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++ID  CK+ R++ A D+       D +    + P+ + YT L+DG+CK G +  A  + 
Sbjct: 502 SMIDSLCKSKRVEEACDL------FDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLML 555

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+ +    +++ F ALI G C  GK+ EA  +  +M+K+ L+P  +T T++I    K+
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKD 615

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD    +R  ++M S G  P   TY   +   C+ G+L++A  ++  M + GV PD  TY
Sbjct: 616 GDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTY 675

Query: 419 NILLEGH 425
           + L++G+
Sbjct: 676 SSLIKGY 682



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 187/347 (53%), Gaps = 10/347 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E  +  Y   +  +N L++ L + G + + + V+ E  +  +     ++N ++NG+CK  
Sbjct: 173 ESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVG 232

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N++E  +  S++  +G+ PD +TY++LI G C+   LD A  +  EM  +G   N+V +T
Sbjct: 233 NVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYT 292

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G C   RID A D+    K+ D+ C     P   TYT+L+   C       AL++ 
Sbjct: 293 HLIHGLCVERRIDEAMDL--FVKMKDDDCY----PTVRTYTVLIKALCGSERKSEALNLV 346

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM ++GI+ +   +T LI   C   K+ +A  +L +ML+ GL P+  TY  +I+ +CK 
Sbjct: 347 KEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKR 406

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    +++ M S    P   TYN L+ G CK   +  A  +L+ ML+  V+PD +TY
Sbjct: 407 GMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTY 465

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSKYRQ 462
           N L++G C+ GN +   +L S   ++GLV D   YTS++    K ++
Sbjct: 466 NSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKR 512



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 137/259 (52%), Gaps = 13/259 (5%)

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C+  N DE F LK        +  +  Y+ L+N L +   +D+ + +  EM E  + PN 
Sbjct: 166 CRKMNKDESFELK-------YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNI 218

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             +  +++G+CK       G+++EA + V  +   GL+PD  TYT L+ G+C+  DL+SA
Sbjct: 219 YTYNKMVNGYCK------VGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSA 272

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + KEM  +G   + VA+T LI G C   ++ EA  +  +M      P   TYT++I  
Sbjct: 273 FKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKA 332

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C +        L+KEM   G  P + TY  L++ LC   +L+ A  LL  ML+ G++P+
Sbjct: 333 LCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPN 392

Query: 415 DITYNILLEGHCKHGNPED 433
            ITYN L+ G+CK G  ED
Sbjct: 393 VITYNALINGYCKRGMIED 411



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 160/330 (48%), Gaps = 25/330 (7%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   FN L+H LC +GK+K+A ++ ++  K  L  T  +   LI+   K  + D  +R 
Sbjct: 565 PNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRR 624

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  SG +PD +TY+  I   C+E RL DAE ++ +M E G++P+   +++LI G+  
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGD 684

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD---------------GFCKEGDL 291
            GR +       A  ++  M   G  P + T+  L+                G C   ++
Sbjct: 685 LGRTN------SAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNM 738

Query: 292 ---ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDAT 347
              +  +++ ++M++ G+  +  ++  L+ G C  G +  AE++   M  K G+ P +  
Sbjct: 739 MEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELV 798

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           +  ++ C CK        +++ +M   GHLP +E+   L+  L K G+ +    +   +L
Sbjct: 799 FNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLL 858

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             G   D++ + I+++G  K G  E F +L
Sbjct: 859 QCGYYDDELAWKIIIDGVGKQGLVEAFYEL 888



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 130/292 (44%), Gaps = 25/292 (8%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++L  G  P  + +   +   C+EG+++DA+ +  +  + G+     ++++LI G+  
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGD 684

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALIN---------------GLCKENRLDDAEL- 220
               +  F +   M  +G  P  +T+ +LI                G+C  + + + ++ 
Sbjct: 685 LGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIV 744

Query: 221 --LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT-NGLNPDKIT 277
             LL +M E G+TPN   +  L+ G C+       G+++ A K+ D M    G++P ++ 
Sbjct: 745 VELLEKMVEHGVTPNAKSYEKLMLGICE------IGNLRVAEKVFDHMQQKEGISPSELV 798

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  LL   CK      A  +  +MI  G      +   LI    + G+      + + +L
Sbjct: 799 FNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLL 858

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           + G   D+  + ++ID   K G  +  + L   M  +G   + +TY+ L+ G
Sbjct: 859 QCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 176/324 (54%), Gaps = 11/324 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           + L  G  P+ + +  L+H  CK+G    A     E  +RG     V++  L++G   A 
Sbjct: 369 QALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAG 428

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D    ++  M   G+ PD   Y+ L++GLCK+ +L  A+LLL EM ++ + P+  ++ 
Sbjct: 429 EVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYA 488

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+DG  +NG +D      EARK+ +     G+NP  + Y  ++ G+CK G ++ A+   
Sbjct: 489 TLVDGFIRNGNLD------EARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACI 542

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M KR +  D   ++ +I G+ +   +  A++M REM+K+  KP+  TYT +I+ FC+ 
Sbjct: 543 NRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRK 602

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD     ++ +EM++ G +P V TY+ L+   CK  +L +A    + ML    VP+D+T+
Sbjct: 603 GDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTF 662

Query: 419 NILLEGHCKHGNPEDFDKLQSEKG 442
           N L+ G  K+G      +  SEKG
Sbjct: 663 NYLVNGFSKNGT-----RAISEKG 681



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 206/409 (50%), Gaps = 17/409 (4%)

Query: 63  DALMIV---YVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYL 118
           +A+ IV   Y D G ++ A++ +  + K Y   P    C  L++ +++     +    Y 
Sbjct: 130 EAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYD 189

Query: 119 EILDYGYSPSVYVFN----VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           E+L+   +    V N    +++  LCKEGK+++ + + ++   +G     + +NTLI+G+
Sbjct: 190 EMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGY 249

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK  +++    L   ++  G  P V TY A+ING CK+      + LL EM  RGLT N 
Sbjct: 250 CKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNV 309

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
            ++ T+ID   K+G I       +A + ++ M   G  PD +TY  L+ G C++G +  A
Sbjct: 310 QVYNTIIDARYKHGHI------VKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEA 363

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + ++ + +G+  +  ++T LI  +C+ G    A   L EM + G KPD  TY  ++  
Sbjct: 364 DQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHG 423

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
               G+      + ++M   G  P    YN LM+GLCK  +L  A +LL  MLD  V+PD
Sbjct: 424 LVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPD 483

Query: 415 DITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLVSKSSKY 460
              Y  L++G  ++GN ++  K   L  EKG+      Y +++    K+
Sbjct: 484 AFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKF 532



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 20/342 (5%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V L    ++L+ G  P   ++N+LM  LCK+ K+  A+++  E   + +   A  + TL+
Sbjct: 432 VALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 491

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G  +  NLDE  +L  +    GM P +  Y+A+I G CK   + DA   ++ M +R L 
Sbjct: 492 DGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLA 551

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P++  ++T+IDG+ K        D+  A+K+  EM      P+ +TYT L++GFC++GDL
Sbjct: 552 PDEFTYSTVIDGYVKQ------HDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDL 605

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             +L I +EM   G+  + V ++ LI  FC+  K+++A     EML     P+D T+  +
Sbjct: 606 HRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYL 665

Query: 352 IDCFCKNGDTKTG--------------FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           ++ F KNG                         M SDG  P    YN+++  LC++G  +
Sbjct: 666 VNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFR 725

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
            A  L + M   G +PD +++  LL G C  G  +++  + S
Sbjct: 726 TALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWKNIVS 767



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 169/345 (48%), Gaps = 21/345 (6%)

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           LP   L    E+LD    P  +V+  L+    + G + +A+ +F+   ++G++   V +N
Sbjct: 465 LPAAKL-LLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYN 523

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            +I G+CK   + +     + M+   + PD +TYS +I+G  K++ LD A+ +  EM + 
Sbjct: 524 AMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKM 583

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
              PN V +T+LI+G C+ G      D+  + KI  EM   GL P+ +TY+IL+  FCKE
Sbjct: 584 KCKPNVVTYTSLINGFCRKG------DLHRSLKIFREMQACGLVPNVVTYSILIGSFCKE 637

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER--------------MLR 334
             L  A    +EM+      ++V F  L++GF + G    +E+                 
Sbjct: 638 AKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFG 697

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M+  G  P  A Y  ++ C C+ G  +T  +L  +M S G +P   ++ AL++G+C  G
Sbjct: 698 RMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEG 757

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           + K    ++   L+   +   + Y+ +L+ +   G  E    LQ+
Sbjct: 758 RSKEWKNIVSCNLNERELQIAVNYSSILDQYLPQGTSEASVILQT 802



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 162/333 (48%), Gaps = 14/333 (4%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS- 188
           + ++ L+  L +     + ++V +      +  T  + + +I  +  +  +++   L   
Sbjct: 95  FAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYF 154

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI--FTT--LIDGH 244
           V++     PDV   ++L+N L K  R++ A  L  EM E     +  +  ++T  ++ G 
Sbjct: 155 VLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGL 214

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G+++      E RK++++    G  P+ I Y  L+DG+CK+GD+E A  +  E+  +
Sbjct: 215 CKEGKLE------EGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLK 268

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G       + A+I+GFC+ G     +R+L EM   GL  +   Y  +ID   K+G     
Sbjct: 269 GFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKA 328

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
              ++ M   G  P + TYN L++G C+ G++  A+ LL+  L  G++P+  +Y  L+  
Sbjct: 329 VETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHA 388

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           +CK G  +         +E+G   D   Y +LV
Sbjct: 389 YCKQGGYDRASNWLIEMTERGHKPDLVTYGALV 421


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 177/315 (56%), Gaps = 7/315 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G +P++  ++ L+H  C+ G   DA+ + D+   +G    +  +N +I    K  
Sbjct: 376 EMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDG 435

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LDE  RL   M+  G +PD+ TY+ +I  LC  +++D+AE +   + E G+  N + + 
Sbjct: 436 KLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYN 495

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI     +GR       +E  ++ +EM  +G   D ++Y  L+   CKEG+++ ++ + 
Sbjct: 496 TLIHALLHSGR------WQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLL 549

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM+ +GI+ +N ++  LI+  C+ GKV +A  + +EML  GL PD  TY  +I+  CK 
Sbjct: 550 EEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKV 609

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G T     LL+++ ++   P + TYN L++  CK   L +A+MLLD  +  G+VP++ T+
Sbjct: 610 GWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTW 669

Query: 419 NILLEGHCKHG-NPE 432
            ++++   +   NP+
Sbjct: 670 GMMVQNFVRQPVNPD 684



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 158/304 (51%), Gaps = 6/304 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V+ +N+LMH LCK G+   A  + DE  ++G     V+++TL++  C+    D+ 
Sbjct: 346 GCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDA 405

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G   +   Y+ +I  L K+ +LD+A  L+ EM  +G  P+   + T+I  
Sbjct: 406 RAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYH 465

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C N ++D      EA  I   +   G+  + ITY  L+      G  +  L +  EM+ 
Sbjct: 466 LCNNDQMD------EAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVL 519

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G  LD V++  LI   C+ G V  +  +L EM+  G+KP++ +Y M+I+  CK G  + 
Sbjct: 520 HGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRD 579

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L KEM + G  P + TYN L+NGLCK G    A  LL+ + +  V PD +TYNIL+ 
Sbjct: 580 ALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILIS 639

Query: 424 GHCK 427
            HCK
Sbjct: 640 WHCK 643



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 201/432 (46%), Gaps = 49/432 (11%)

Query: 27  RDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86
           + ++H +V++ G+  +A+L   +L              LM    D+   +D +    L  
Sbjct: 219 QTVIHALVAQGGVAEAATLLDEML--------------LMGCAADVNTFNDVV--LGLCG 262

Query: 87  KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
             + R  AR    L+DRMM                 +G +PSV  +  L+  LC+  +  
Sbjct: 263 LGHVREAAR----LVDRMMM----------------HGCTPSVVTYGFLLRGLCRTRQAD 302

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A  +      R      V  NT+I G      L     L  +M   G  PDV+TY+ L+
Sbjct: 303 EAYAMLG----RVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILM 358

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +GLCK  R   A  +L EM E+G  PN V ++TL+   C+NG  D      +AR ++D+M
Sbjct: 359 HGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD------DARAMLDQM 412

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G + +   Y  ++    K+G L+ A+ + +EM  +G + D   +  +I   C   ++
Sbjct: 413 SAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQM 472

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EAE +   +L+ G+  +  TY  +I     +G  + G RL  EM   G    V +YN L
Sbjct: 473 DEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGL 532

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGL 443
           +  LCK G +  + MLL+ M+  G+ P++ +YN+L+   CK G   D  +L  E   +GL
Sbjct: 533 IKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGL 592

Query: 444 VSDYACYTSLVS 455
             D   Y +L++
Sbjct: 593 TPDIVTYNTLIN 604



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 172/382 (45%), Gaps = 32/382 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLE-------------------ILDYGYSPSVYVFNVLMHKLC 140
           L  RM+R  +P  T  F +                    +  +G  P   ++  ++H L 
Sbjct: 167 LYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALV 226

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
            +G + +A  + DE    G  A   +FN ++ G C   ++ E  RL   M   G  P V 
Sbjct: 227 AQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVV 286

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY  L+ GLC+  + D+A  +L  + E     N V+  T+I G    G++  A ++ E  
Sbjct: 287 TYGFLLRGLCRTRQADEAYAMLGRVPEV----NVVMLNTVIRGCLAEGKLARATELYEM- 341

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
                M + G  PD  TY IL+ G CK G   SA+ +  EM ++G   + V ++ L+  F
Sbjct: 342 -----MGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 396

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           CR G   +A  ML +M   G   +   Y  +I    K+G      RL++EM+S G  P +
Sbjct: 397 CRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDI 456

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            TYN ++  LC + Q+  A  +   +L+ GVV + ITYN L+      G  ++  +L +E
Sbjct: 457 CTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANE 516

Query: 441 ---KGLVSDYACYTSLVSKSSK 459
               G   D   Y  L+    K
Sbjct: 517 MVLHGCPLDVVSYNGLIKALCK 538



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 106/273 (38%), Gaps = 49/273 (17%)

Query: 221 LLHEMCER-GLTPN----DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           LL +M  R  +TP+    + + +TL    C            +A  +   M  + + P  
Sbjct: 131 LLDQMPRRFAVTPSFRSYNAVLSTLARADCH----------ADALLLYRRMLRDRVPPTT 180

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            T+ +     C+ G    AL + + M + G   D V +  +I      G V EA  +L E
Sbjct: 181 FTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDE 240

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK--- 392
           ML +G   D  T+  V+   C  G  +   RL+  M   G  P+V TY  L+ GLC+   
Sbjct: 241 MLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQ 300

Query: 393 ----------------------------HGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                                        G+L  A  L + M   G  PD  TYNIL+ G
Sbjct: 301 ADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHG 360

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            CK G      ++     EKG   +   Y++L+
Sbjct: 361 LCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLL 393



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 1/170 (0%)

Query: 259 ARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           A  ++D+M     + P   +Y  +L    +      AL + + M++  +      F    
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 187

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
              CR G+  +A  +LR M + G  PD   Y  VI      G       LL EM   G  
Sbjct: 188 RALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCA 247

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             V T+N ++ GLC  G ++ A  L+D M+  G  P  +TY  LL G C+
Sbjct: 248 ADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCR 297


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 189/357 (52%), Gaps = 6/357 (1%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +  AI+ F ++    ++        +I  + R    T  +     +   G  P V ++
Sbjct: 175 GKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIY 234

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N ++ +LCK+  + +A  +F +    G+  T V++ +LI+G        E F L + M+G
Sbjct: 235 NTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKG 294

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
             + PD+  +S LI+ +CKE  + +A ++L  M E G+ P+   + TL++G+C      +
Sbjct: 295 GNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYC------L 348

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
             ++ EARK+ + M + G  PD  +++IL++G+CK   ++ A  +  EM  RG+  D V+
Sbjct: 349 RMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVS 408

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  LISG C+  + +EAE + ++M   G  P+  TY++++DC  K G       L + M 
Sbjct: 409 YNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAME 468

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           + G  P + TYN +++G+CK+G+ K+A  L   +   G+ P++      ++G CK G
Sbjct: 469 NSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGG 525



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 191/348 (54%), Gaps = 14/348 (4%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  +E+ D     GY P+V+ +++++  LC+ GK  +   + +     G     V +NT
Sbjct: 177 IGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNT 236

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +++  CK + ++E   +   M+G+G+ P V TY++LI+GL    R  +A  LL+EM    
Sbjct: 237 IVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGN 296

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           + P+ V F+ LID  CK G +       EAR I+  M   G+ PD  TY  L++G+C   
Sbjct: 297 IMPDLVAFSVLIDIMCKEGEVS------EARVILKTMTEMGVEPDVATYNTLMNGYCLRM 350

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           ++  A  + + MI +G   D  +F+ L++G+C+  ++ EA+++  EM   GL PD  +Y 
Sbjct: 351 EVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYN 410

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I   C+         L K+M S+G+ P + TY+ L++ L K G L  A  L   M + 
Sbjct: 411 TLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENS 470

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGL-VSDYACYTSL 453
           G+ PD +TYNI+++G CK+G  +D  +L +E   KGL  +++ C  ++
Sbjct: 471 GLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTI 518



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 163/314 (51%), Gaps = 6/314 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G S  V    +L++  C+   +     V  +  K GL    ++F+TLING C    +   
Sbjct: 121 GISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRA 180

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L  VM   G +P+V++YS +I GLC+  +  +   LL  M   G  P+ VI+ T++D 
Sbjct: 181 IELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDR 240

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+  ++      EA  I  +M   G+ P  +TYT L+ G    G  + A  +  EM  
Sbjct: 241 LCKDRLVN------EAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKG 294

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             I  D VAF+ LI   C+ G+V EA  +L+ M ++G++PD ATY  +++ +C   +   
Sbjct: 295 GNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVE 354

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ + M S G +P V +++ L+NG CK  ++  A  L D M   G++PD ++YN L+ 
Sbjct: 355 ARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLIS 414

Query: 424 GHCKHGNPEDFDKL 437
           G C+   P + ++L
Sbjct: 415 GLCQARRPLEAEEL 428



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 141/253 (55%), Gaps = 6/253 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  F+VL+  +CKEG++ +A+++     + G+     ++NTL+NG+C    + E  ++
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV 358

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             VM   G  PDV+++S L+NG CK  R+D+A+ L  EM  RGL P+ V + TLI G C+
Sbjct: 359 FEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQ 418

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R        EA ++  +M +NG  P+ +TY+ILLD   K+G L+ A+ + + M   G+
Sbjct: 419 ARR------PLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGL 472

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D V +  +I G C+ GK  +A  +  E+   GL+P++   T  ID  CK G      +
Sbjct: 473 KPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHK 532

Query: 367 LLKEMRSDGHLPA 379
             ++M  D   PA
Sbjct: 533 AFRQMEKDDCSPA 545



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 164/339 (48%), Gaps = 9/339 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F  L   L +    K    +  +    G+    +S   LIN  C+  ++D GF +
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +   G+ P+V T+S LING C E ++  A  L   M  RG  PN   ++ +I G C+
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCR 208

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  G   E  K+++ M   G  PD + Y  ++D  CK+  +  A+ I  +M   GI
Sbjct: 209 ------VGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGI 262

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               V +T+LI G    G+  EA  +L EM    + PD   ++++ID  CK G+      
Sbjct: 263 LPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARV 322

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +LK M   G  P V TYN LMNG C   ++  A  + + M+  G +PD  +++IL+ G+C
Sbjct: 323 ILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYC 382

Query: 427 KHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           K    ++  +L  E   +GL+ D   Y +L+S   + R+
Sbjct: 383 KAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARR 421



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 140/281 (49%), Gaps = 9/281 (3%)

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +N+++     + M  +   P +  +  L + L +         L  +M   G++ + +  
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T LI+  C+   +D          ++ ++   GL P+ IT++ L++GFC EG +  A+++
Sbjct: 130 TILINCFCRLCHVDYGFS------VLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIEL 183

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              M+ RG + +  +++ +I G CR GK  E  ++L  M  VG +PD   Y  ++D  CK
Sbjct: 184 FDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCK 243

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           +        +  +M+  G LP V TY +L++GL   G+ K A  LL+ M    ++PD + 
Sbjct: 244 DRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVA 303

Query: 418 YNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVS 455
           +++L++  CK G   +     K  +E G+  D A Y +L++
Sbjct: 304 FSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMN 344



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 41/191 (21%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P V+ F++L++  CK  +I +A+ +FDE   RGL    VS+NTLI+G C+A+ 
Sbjct: 362 MISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARR 421

Query: 180 -----------------------------------LDEGFRLKSVMEGSGMRPDVYTYSA 204
                                              LD+   L   ME SG++PD+ TY+ 
Sbjct: 422 PLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNI 481

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           +I+G+CK  +  DA  L  E+  +GL PN+ + T  IDG CK G +D      EA K   
Sbjct: 482 MIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLD------EAHKAFR 535

Query: 265 EMCTNGLNPDK 275
           +M  +  +P +
Sbjct: 536 QMEKDDCSPAQ 546



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 75  LDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           +D+A Q F  +  H   IP       LI  + +   P      + ++   GY P++  ++
Sbjct: 387 IDEAKQLFDEM-THRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYS 445

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+  L K+G +  A  +F      GL    V++N +I+G CK     +   L + +   
Sbjct: 446 ILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVK 505

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           G++P+ +  +  I+G+CK   LD+A     +M +   +P            C NGR
Sbjct: 506 GLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQ---------GCINGR 552


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 155/272 (56%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G  P+ + +  L++  CK G+++ A+M+  +   RG+    + FNT+I+G+C+  
Sbjct: 273 ECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKN 332

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+   +K +ME  G+  DVYTY+ L  GL + NR+D+A+ LL  M E+G+ PN V +T
Sbjct: 333 MVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYT 392

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  HC  G      DM EAR++  EM  NG  P  +TY +++DG+ K+G +  A   +
Sbjct: 393 TLISIHCNEG------DMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 446

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM K+G+  D  ++ AL+ G C  GKV  A R+  EM + G KP+   YT +I    K 
Sbjct: 447 NEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKE 506

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L   M  DG  P    Y+AL+  L
Sbjct: 507 GRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 195/409 (47%), Gaps = 33/409 (8%)

Query: 47  ASILETRGTHLPGLV--LDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A +L+   T  P  V  L A ++V  Y   G +  A Q    + +H  ++ A     L+D
Sbjct: 127 ADLLKQAATSCPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLD 186

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              R             + + G  P+V  + +L+  L     I   + VF+E   + L  
Sbjct: 187 AYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSG 246

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
               ++++IN +C+A N+     +     G+G+ P+ +TY ALING CK  +++ AE+L+
Sbjct: 247 DVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLV 306

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK------------------------- 257
            +M  RG+  N ++F T+IDG+C+   +D A ++K                         
Sbjct: 307 TDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRA 366

Query: 258 ----EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA+ ++  M   G+ P+ ++YT L+   C EGD+  A  + +EM   G E   V +
Sbjct: 367 NRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTY 426

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G+ + G + EAER   EM K GL PD  +Y  ++   C NG      RL +EM+ 
Sbjct: 427 NVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQ 486

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            G  P +  Y AL++GL K G+ + A  L D ML  G+ PDD  Y+ L+
Sbjct: 487 RGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 535



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 190/366 (51%), Gaps = 46/366 (12%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           +V++   CK G++  A+ + DE  + G+   A+ +N+L++ + + K+ D    +  VME 
Sbjct: 147 SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 206

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P V TY+ L++GL     +   E +  EM  + L+ +   ++++I+ +C+      
Sbjct: 207 EGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCR------ 260

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           AG+++ A ++ DE   NG+ P++ TY  L++GFCK G +E+A  +  +M  RG+ ++ + 
Sbjct: 261 AGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIV 320

Query: 313 FTALISGFCR-----------------------------------GGKVVEAERMLREML 337
           F  +I G+CR                                     ++ EA+ +LR M+
Sbjct: 321 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 380

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G++P+  +YT +I   C  GD     RL +EM  +G  P++ TYN +M+G  K G ++
Sbjct: 381 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 440

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSL 453
            A    + M   G+VPD  +Y  L+ GHC +G  +     F++++ ++G   +   YT+L
Sbjct: 441 EAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMK-QRGSKPNLVAYTAL 499

Query: 454 VSKSSK 459
           +S  +K
Sbjct: 500 ISGLAK 505



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 11/216 (5%)

Query: 215 LDDAELLLHEM---CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           LD A  LL +    C   +TP  +  + ++DG+CK+GR+        AR+++DEM  +G+
Sbjct: 123 LDTAADLLKQAATSCPDSVTP--LSASVVVDGYCKSGRV------AHARQLLDEMPRHGV 174

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             + + Y  LLD + +E D +   ++ K M   GIE     +T L+ G      + + E 
Sbjct: 175 KVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEA 234

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EM    L  D   Y+ VI+ +C+ G+ +    +  E   +G  P   TY AL+NG C
Sbjct: 235 VFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFC 294

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           K GQ++ A ML+  M   GV  + I +N +++G+C+
Sbjct: 295 KIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 330



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E+   G  P +Y +  L+H  C  GK+  A  +F+E  +RG     V++  LI+G  
Sbjct: 445 FKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 504

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           K    +E F+L   M G G+ PD   YSAL+  L
Sbjct: 505 KEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 234/505 (46%), Gaps = 65/505 (12%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL--V 61
           RL L  +S +   L +  +H+ A  LL  + S     +  ++F ++ + R   LP     
Sbjct: 84  RLRLFLFSALSPRLRSRPLHAHAVSLLLRLSSH----ADEAMFDALADARAAGLPASSSA 139

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
             AL+  +   G   DA+Q F  + +   R  A     ++  ++ + +  + L  Y  ++
Sbjct: 140 FAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMV 199

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
             G +P+   +NVLM  LCK+G   DA  +FDE   RG+      +  L++  C A  +D
Sbjct: 200 AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKID 259

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA--ELLLHE--------------- 224
           E  +L   M+  G  PD  TY+A ++GLCK  R+++A   L++ +               
Sbjct: 260 EAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLI 319

Query: 225 ------------------MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
                             M ER ++P+ V++T +I G  + GRI+      +A   +D M
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIE------DALSFLDVM 373

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G  PD   Y  +L   C  GDLE A  +R EM++  + LD+   T +I G C+ G V
Sbjct: 374 KKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLV 433

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV------ 380
            EA ++  EM + G  P   TY  +ID F + G  +    L  +M   G+ P++      
Sbjct: 434 DEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM-GNNPSLFLRLTL 492

Query: 381 --------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
                   E+   L++ +C+ GQ+  A  LL +++D GVVPD +TYN L+ G CK  N +
Sbjct: 493 GANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  E   KG+  D   Y +L+
Sbjct: 553 GAVRLFKELQLKGISPDEITYGTLI 577



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 22/350 (6%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G +++A Q   +L+   F +  +G  CLID + +        G+Y  +L+   SP V +
Sbjct: 290 VGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVL 349

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           + +++    + G+I+DA    D   K+G       +NT++   C   +L+    L+S M 
Sbjct: 350 YTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEML 409

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            + +  D  T + +I GLCK   +D+A  +  EM E G  P  + +  LIDG  + GR++
Sbjct: 410 QNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 252 MAGDMKEARKIVDEMCTNGLNP--------------DKITYTILLDGFCKEGDLESALDI 297
                 EAR +  +M   G NP              D  +   L+   C+ G +  A  +
Sbjct: 470 ------EARMLFHKM-EMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKL 522

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            + +I  G+  D V +  LI+G C+   +  A R+ +E+   G+ PD+ TY  +ID   +
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLR 582

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTM 406
                    L + +   G  P++  YN++M  LC+  +L  A N+ LD +
Sbjct: 583 AHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYL 632



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 55/298 (18%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYV 131
           G +D+A+Q F  + +H           LID   R   L    + F+   ++ G +PS+++
Sbjct: 431 GLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFH--KMEMGNNPSLFL 488

Query: 132 --------------FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
                            L+H +C+ G++  A  +       G+    V++NTLING CKA
Sbjct: 489 RLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKA 548

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +NLD   RL   ++  G+ PD  TY  LI+GL + +R +DA +L   + + G +P+  I+
Sbjct: 549 RNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIY 608

Query: 238 TTLIDGHCKNGRIDMAGDM----------------------------------KEARKIV 263
            +++   C+  ++  A ++                                  +E  KI 
Sbjct: 609 NSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKID 668

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            E      NP    YTI L G C+    + AL I   + + GI++       LI+  C
Sbjct: 669 QEYGYISSNP----YTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLC 722



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           LD A++ F+ L+             LID ++R +     +  +  IL  G SPS+ ++N 
Sbjct: 551 LDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNS 610

Query: 135 LMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKN--LDEGFR--LKSV 189
           +M  LC+  K+  A  +  D   K+  +   V    L N H + ++  LD+G R  +K  
Sbjct: 611 MMRSLCRMKKLSQAINLWLDYLPKK--YNFPVESEVLANAHKEIEDGSLDDGVRELIKID 668

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
            E   +  + YT   +  GLC+  R DDA  + H + E G+         LI+  C +  
Sbjct: 669 QEYGYISSNPYTIWLI--GLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRN 726

Query: 250 IDMAGDM 256
           ++ A D+
Sbjct: 727 LNAAVDI 733


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 201/423 (47%), Gaps = 55/423 (13%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           + T+ +++++++ +V   + ++A +  + +V+ K +                H   L  +
Sbjct: 129 KQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLN--------------IHPNALTFN 174

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            ++     LG +D AI+ FR        IP R C                          
Sbjct: 175 LVIKAMCRLGLVDKAIEVFR-------EIPLRNC-------------------------- 201

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
             +P  Y ++ LMH LCKE +I +A  + DE    G     V+FN LI+  CK  +L   
Sbjct: 202 --APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRA 259

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M   G  P+  TY+AL++GLC + +L+ A  LL++M      PNDV F TLI+G
Sbjct: 260 AKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLING 319

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
               GR        +  +++  +   G   ++  Y+ L+ G CKEG    A+++ KEM+ 
Sbjct: 320 FVMQGRAS------DGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVG 373

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + ++ALI G CR GK+ EA   L EM   G  P+  TY+ ++  + + GD+  
Sbjct: 374 KGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHK 433

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + KEM ++  +     Y+ L+NGLCK G+   A M+   ML  G+  D + Y+ ++ 
Sbjct: 434 AILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIH 493

Query: 424 GHC 426
           G C
Sbjct: 494 GFC 496



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 168/340 (49%), Gaps = 12/340 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF---GKRGLHATAVSFNTLINGHCKAK 178
           ++    +V  FN +++ + +EG    A   ++         +H  A++FN +I   C+  
Sbjct: 125 EFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLG 184

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+   +   +      PD YTYS L++GLCKE R+D+A  LL EM   G  PN V F 
Sbjct: 185 LVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFN 244

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   CK G      D+  A K+VD M   G  P+++TY  L+ G C +G LE A+ + 
Sbjct: 245 VLISALCKKG------DLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLL 298

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M+      ++V F  LI+GF   G+  +  R+L  +   G + ++  Y+ +I   CK 
Sbjct: 299 NQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKE 358

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       L KEM   G  P    Y+AL++GLC+ G+L  A   L  M + G +P+  TY
Sbjct: 359 GKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTY 418

Query: 419 NILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVS 455
           + L+ G+ + G+        K  +    + +  CY+ L++
Sbjct: 419 SSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILIN 458



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 169/331 (51%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   FN+++  +C+ G +  A  VF E   R       +++TL++G CK + +DE   L
Sbjct: 168 PNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSL 227

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M+  G  P++  ++ LI+ LCK+  L  A  L+  M  +G  PN+V +  L+ G C 
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLC- 286

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                + G +++A  ++++M +N   P+ +T+  L++GF  +G       +   +  RG 
Sbjct: 287 -----LKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGH 341

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   +++LISG C+ GK  +A  + +EM+  G  P+   Y+ +ID  C+ G       
Sbjct: 342 RGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARG 401

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L EM++ G+LP   TY++LM G  + G    A ++   M +   + +++ Y+IL+ G C
Sbjct: 402 FLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLC 461

Query: 427 KHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           K G   +     K    +G+  D   Y+S++
Sbjct: 462 KDGKFMEALMVWKQMLSRGIKLDVVAYSSMI 492



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 163/379 (43%), Gaps = 46/379 (12%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+ +VH L       +A  LL+ +VS K + +          T GT + G V+      
Sbjct: 277 TYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDV--------TFGTLINGFVMQ----- 323

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G   D  +    L     R        LI  + +       +  + E++  G  P+
Sbjct: 324 ----GRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPN 379

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
             V++ L+  LC+EGK+ +A+    E   +G    + ++++L+ G+ +A +  +   +  
Sbjct: 380 TIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWK 439

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +    +   YS LINGLCK+ +  +A ++  +M  RG+  + V ++++I G C   
Sbjct: 440 EMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCN-- 497

Query: 249 RIDMAGDMKEARKIVDEMCTNG--LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
               A  +++  K+ ++M   G  + PD ITY ILL+ FC +  +  A+DI   M+ +G 
Sbjct: 498 ----ANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGC 553

Query: 307 ELDNVA---------------------FTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           + D +                         L+    +  + + A +++  M+   L P  
Sbjct: 554 DPDFITCDIFLKTLRENMNPPQDGREFLDELVVRLVKRQRTIGASKIIEVMMHKFLLPKA 613

Query: 346 ATYTMVIDCFCKNGDTKTG 364
           +T+ MV+   CK  + +  
Sbjct: 614 STWAMVVQQVCKPKNVRKA 632



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 97/182 (53%), Gaps = 17/182 (9%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM- 190
           +++L++ LCK+GK  +A MV+ +   RG+    V+++++I+G C A  +++G +L + M 
Sbjct: 453 YSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQML 512

Query: 191 -EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN----DVIFTTLIDG-- 243
            +G  ++PDV TY+ L+N  C +  +  A  +L+ M ++G  P+    D+   TL +   
Sbjct: 513 CQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMN 572

Query: 244 HCKNGR-------IDMAGDMKE--ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             ++GR       + +    +   A KI++ M    L P   T+ +++   CK  ++  A
Sbjct: 573 PPQDGREFLDELVVRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKA 632

Query: 295 LD 296
           + 
Sbjct: 633 IS 634


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 6/308 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  ++ NV+++ LC    +     V     K GL  + V+F  LING C   ++   
Sbjct: 106 GIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRA 165

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   +E +G R DV TY  LINGLCK  +  +A   L +M ER   PN V+++T++DG
Sbjct: 166 VELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDG 225

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+G +       EA  +  EM   G+ P+ +TYT L+ G C  G  + A  +  EM+K
Sbjct: 226 LCKDGLVS------EALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMK 279

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D  +   L+   C+ GK+++A+ ++  M+ VG  PD  TY  +ID +C       
Sbjct: 280 MGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDE 339

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R+ + M S G LP +  Y +L++G CK   +  A  LLD M+ +G  PD +T+  L+ 
Sbjct: 340 ATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIG 399

Query: 424 GHCKHGNP 431
           G C+ G P
Sbjct: 400 GFCQVGRP 407



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 183/357 (51%), Gaps = 21/357 (5%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +G  +E++D+    GY   V  + VL++ LCK GK  +A     +  +R  +   V ++T
Sbjct: 162 VGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYST 221

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +++G CK   + E   L   M G G++P++ TY+ LI GLC   R  +A  LL EM + G
Sbjct: 222 VMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMG 281

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           + P+      L+D  CK G+I       +A+ ++  M   G  PD  TY  L+D +C + 
Sbjct: 282 VMPDLQSLNILVDVLCKEGKI------MQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQN 335

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ A  + + M+ RG   D VA+T+LI G+C+   + +A  +L EM+KVG  PD  T+T
Sbjct: 336 QMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWT 395

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM--- 406
            +I  FC+ G       L   M   G +P ++T   +++GLCK   L  A  L   M   
Sbjct: 396 TLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKS 455

Query: 407 -LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
            LDL +V     Y+I+L+G C  G      +L S    KGL  +   YT +++  +K
Sbjct: 456 NLDLNIV----IYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAK 508



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 173/354 (48%), Gaps = 8/354 (2%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G   +A+   R + +  +         ++D + +  L +  LG  LE+   G  P++  
Sbjct: 194 MGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVT 253

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L+  LC  G+ K+A  + DE  K G+     S N L++  CK   + +   +   M 
Sbjct: 254 YTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMI 313

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  PDV+TY++LI+  C +N++D+A  +   M  RG  P+ V +T+LI G CK   I+
Sbjct: 314 LVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNIN 373

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A  ++DEM   G  PD +T+T L+ GFC+ G   +A ++   M K G ++ N+
Sbjct: 374 ------KAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYG-QVPNL 426

Query: 312 AFTALI-SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
              A+I  G C+   + EA  +   M K  L  +   Y++++D  C  G   T   L   
Sbjct: 427 QTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSC 486

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + + G    V  Y  ++NG  K G L  A  LL  M + G +PD  TYN+ ++G
Sbjct: 487 LPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQG 540



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 152/304 (50%), Gaps = 6/304 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P +   N+L+  LCKEGKI  A+ V       G      ++N+LI+ +C   
Sbjct: 276 EMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQN 335

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  R+  +M   G  PD+  Y++LI+G CK   ++ A  LL EM + G TP+ V +T
Sbjct: 336 QMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWT 395

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G C+ GR  +A     A+++   M   G  P+  T  I+LDG CK   L  AL + 
Sbjct: 396 TLIGGFCQVGR-PLA-----AKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLF 449

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M K  ++L+ V ++ ++ G C  GK+  A  +   +   GL+ +   YT++I+ F K 
Sbjct: 450 HAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQ 509

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       LL  M  +G +P   TYN  + GL    ++  +   L  M D G   D  T 
Sbjct: 510 GLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTT 569

Query: 419 NILL 422
            +++
Sbjct: 570 EMII 573



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 137/303 (45%), Gaps = 13/303 (4%)

Query: 161 HATAVSFNTLINGHCKA---KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           H+    F   +   CK+   K++DE       M      P V  ++ L+  + K      
Sbjct: 34  HSNKTQFLNFMRNQCKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTT 93

Query: 218 AELLLHEM-CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           A  L+ EM    G+ P+  I   +I+  C    +           ++  M   GL P  +
Sbjct: 94  AISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFG------FSVLGTMLKLGLEPSVV 147

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           T+TIL++G C +GD+  A+++   + K G   D   +  LI+G C+ GK  EA   LR+M
Sbjct: 148 TFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKM 207

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            +    P+   Y+ V+D  CK+G       L  EM   G  P + TY  L+ GLC  G+ 
Sbjct: 208 EERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRW 267

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSL 453
           K A  LLD M+ +GV+PD  + NIL++  CK G     +         G V D   Y SL
Sbjct: 268 KEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSL 327

Query: 454 VSK 456
           + +
Sbjct: 328 IDR 330



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 125/286 (43%), Gaps = 45/286 (15%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +GF + +   G  P V+ +N L+ + C + ++ +A  VF+    RG     V++ +LI+
Sbjct: 308 VIGFMILV---GEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIH 364

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI-------------------------- 206
           G CK KN+++   L   M   G  PDV T++ LI                          
Sbjct: 365 GWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVP 424

Query: 207 ---------NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
                    +GLCK   L +A  L H M +  L  N VI++ ++DG C       AG + 
Sbjct: 425 NLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCS------AGKLN 478

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
            A ++   +   GL  +   YTI+++GF K+G L+ A D+   M + G   D+  +   +
Sbjct: 479 TALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFV 538

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN-GDTK 362
            G     ++  + + L  M   G   D  T  M+I+    N GD +
Sbjct: 539 QGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLSTNQGDNE 584



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 89  YFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           Y ++P  + C  ++D + ++ L +  L  +  +       ++ ++++++  +C  GK+  
Sbjct: 420 YGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNT 479

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  +F     +GL     ++  +ING  K   LD+   L S ME +G  PD  TY+  + 
Sbjct: 480 ALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQ 539

Query: 208 GLCKENRLDDAELLLHEMCERGLT 231
           GL  E  +  +   L  M ++G +
Sbjct: 540 GLVAEREIARSIKYLTMMRDKGFS 563


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 6/353 (1%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  E+   G+ P V ++N L++ LCK  ++ +A  +     + G + T V++N+L+ 
Sbjct: 190 GFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLME 249

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C++K +D  FRL  VM   G  PDV  Y+ +I GLC++ RLDDA+ LL +M      P
Sbjct: 250 LFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVP 309

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + ++T+IDG CK+ R+D    ++ A +I++ M   G  P+  TY ++++G C+    +
Sbjct: 310 DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQ 369

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            AL + + MI   +  D  +F+ +I   C+   +  A ++   M +   KP+   Y  +I
Sbjct: 370 QALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALI 429

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D   K G+     R+  E+  +   P V TYN++++GLC  G+++ A  +++ M+     
Sbjct: 430 DGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF 488

Query: 413 PDDITYNILLEGHCKHGNPED-FDKLQS--EKGLVSDYACYTSLVSKSSKYRQ 462
           PD  +Y  L+ G C+    E+ ++  Q+   KG   +   Y  LV++  K ++
Sbjct: 489 PDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKR 541



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 186/360 (51%), Gaps = 22/360 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLI 171
            LG++  +     +P +  FN+L+  L K G++++A  +F+            V++ T+I
Sbjct: 84  ALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVI 143

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG CK   LD    L  +M  +G  P+V TYS L+ GLCK  R D    LL EM  RG  
Sbjct: 144 NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ +++ TL++G CK+ R+D      EA ++V  M  +G  P  +TY  L++ FC+   +
Sbjct: 204 PDVIMYNTLLNGLCKSRRLD------EALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A  + + M +RG   D + +  +I+G CR  ++ +A+ +L++M+     PD  TY+ +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 352 IDCFCKNGDTKTGFRL------LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
           ID  CK+      ++L      L+ M+  G  P   TY  ++ GLC+  + + A  LL  
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRR 377

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYAC------YTSLVSKSSK 459
           M+D  VVPD  ++++++   CK     D D      G++S+  C      Y +L+   SK
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKS---HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK 434



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 169/314 (53%), Gaps = 7/314 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ + +  L+H LCK GK+  A  + DE   RG+       N +I G CKA    +    
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM-CERGLTPNDVIFTTLIDGHC 245
              + G+   PD+ T++ L++ L K  R+++A  +   M       PN V +TT+I+G C
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G++D       A +++D M   G  P+ ITY++L++G CK G  +    + +EM +RG
Sbjct: 148 KDGKLD------RAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            + D + +  L++G C+  ++ EA  +++ M++ G  P   TY  +++ FC++      F
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAF 261

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           RL++ M   G  P V  YN ++ GLC+  +L +A  LL  M+    VPD ITY+ +++G 
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321

Query: 426 CKHGNPEDFDKLQS 439
           CK    +   KL++
Sbjct: 322 CKDWRVDADWKLEA 335



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 13/327 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            N  ++ L + G+   A  +F E  +R +     ++ +LI+G CKA  LD+ + L   M 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFRE--ERCV-PNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ P V  ++ +I GLCK  R  DA      +     TP+ + F  L+D   K+GR++
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 252 MAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
                 EA +I + M T+    P+ +TYT +++G CK+G L+ A+++   M + G   + 
Sbjct: 118 ------EAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNV 171

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           + ++ L+ G C+ G+  +   +L+EM + G +PD   Y  +++  CK+        L++ 
Sbjct: 172 ITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQL 231

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P V TYN+LM   C+  Q+  A  L+  M + G  PD I YN ++ G C+   
Sbjct: 232 MIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR 291

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            +D   L  +      V D   Y++++
Sbjct: 292 LDDAQALLKQMVAARCVPDVITYSTII 318



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 128/270 (47%), Gaps = 37/270 (13%)

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK-------------IVDE 265
           +L   E C     PN+  + +LI G CK G++D A ++ +  +             ++  
Sbjct: 19  QLFREERC----VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRG 74

Query: 266 MCTNG----------------LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +C  G                  PD IT+ IL+D   K G +E A  I + M      L 
Sbjct: 75  LCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLP 134

Query: 310 NVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           NV  +T +I+G C+ GK+  A  +L  M + G  P+  TY+++++  CK G T  GF LL
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +EM   G  P V  YN L+NGLCK  +L  A  L+  M+  G  P  +TYN L+E  C+ 
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 429 GNPEDFDKL---QSEKGLVSDYACYTSLVS 455
              +   +L    SE+G   D   Y ++++
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIA 284



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 112/250 (44%), Gaps = 34/250 (13%)

Query: 127 PSVYVFNVLMHKLCKEG------KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           P V  ++ ++  LCK+       K++ A  + +   + G    A ++  +I G C+A+  
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            +   L   M  S + PD+ ++S +I  LCK + LD A  +   M ER   PN V +  L
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 241 IDGHCKNGRIDMA----------------------------GDMKEARKIVDEMCTNGLN 272
           IDG  K G +D A                            G ++EA ++V+ M      
Sbjct: 429 IDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF 488

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD  +Y  L+ G C+   +E A ++ + +  +G  ++   +  L++  C+  ++ +A  +
Sbjct: 489 PDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGV 548

Query: 333 LREMLKVGLK 342
             ++++ G K
Sbjct: 549 ANKLIEAGYK 558



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R       L     ++D    P +  F++++  LCK   +  A  +F    +R 
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  LI+G  K   +D+  R+  +M  S  RP V TY+++++GLC   R+++A 
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAV 476

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            ++  M  +   P+   +  LI G C+   ++      EA ++   +   G   +   Y 
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVE------EAYELFQAVEAKGFAMEVGVYN 530

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRG 305
           +L++  CK+  L  A  +  ++I+ G
Sbjct: 531 VLVNELCKKKRLSDAHGVANKLIEAG 556



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           N A   L+    R G+  +A ++ RE   V   P++ TY  +I   CK G     + LL 
Sbjct: 2   NCALNLLV----RAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLD 54

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EMR  G  P V  +N ++ GLCK G+  +A     T+      PD IT+NIL++   K G
Sbjct: 55  EMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSG 114

Query: 430 NPED----FDKLQSEKGLVSDYACYTSLVS 455
             E+    F+ + +    + +   YT++++
Sbjct: 115 RVEEAFQIFESMHTSSQCLPNVVTYTTVIN 144


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 181/355 (50%), Gaps = 7/355 (1%)

Query: 85  LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
           +   +FR+ A     LI  + +   P   L     +   GY  SV  +  L+  LCK G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           +  AQ +  +    G     V++  LI+G CKA+   +  +    M  SG  PD+ TY++
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 205 LINGLCKENRLDDAELLLHE-MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           LI+GLC  NR+DDA L+L E M E G  P+ V + T I G CK G++D   +M E     
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLE----- 175

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM   G++PD +T+  ++ G CK   ++ A  + K M++RG   D++ ++ ++    R 
Sbjct: 176 -EMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRA 234

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            ++   E +L  M+K G     ATY  +I    + GD ++     ++    G +  V T+
Sbjct: 235 NRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTH 294

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
           NA +  LC+ G+   A  +L  M++ G +P+ ++YN +++G CK GN +D  KL 
Sbjct: 295 NAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLS 349



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 214/439 (48%), Gaps = 40/439 (9%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV 61
           HFRL    Y+T++  L   +    A +LLH++ +    G  AS+      T  T + GL 
Sbjct: 5   HFRLDAAIYNTLIAGLCKARKPRHALELLHVMAAN---GYDASVV-----TYTTLIDGLC 56

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTL 114
                    DL    DA Q   LL+K    +   GC         LID + +   P   +
Sbjct: 57  KSG------DL----DAAQA--LLQK----MADAGCAPNVVTYTALIDGLCKARRPHDAI 100

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG-KRGLHATAVSFNTLING 173
                +L  G  P +  +N L+H LC   ++ DA +V  E   + G     V++NT I+G
Sbjct: 101 QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISG 160

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CKA  LD+G  +   M+  G+ PDV T+ ++I+GLCK NR+DDA  +   M ERG  P+
Sbjct: 161 LCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 220

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + ++ ++D   +  R+D         ++++ M  +G      TY  L+    + GD+ES
Sbjct: 221 SLTYSIMLDNLSRANRLD------TVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIES 274

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A    ++ ++ G  ++     A I   CR GK   A+ +L  M++ G  P+  +Y  VID
Sbjct: 275 ASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVID 334

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV- 411
             CK+G+    ++L ++M   G   P V  +N L++G CK G+L  A  LL  M    + 
Sbjct: 335 GLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNIC 394

Query: 412 VPDDITYNILLEGHCKHGN 430
           VPD +TYN +++G  K G+
Sbjct: 395 VPDVVTYNTMIDGQSKFGS 413



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 32/245 (13%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTN-LPTVTLGFYLEILDYGYS 126
           +DDA Q F+ + +       RGC         ++D + R N L TV      E+L++   
Sbjct: 202 IDDAFQVFKGMLE-------RGCVPDSLTYSIMLDNLSRANRLDTVE-----EVLEHMVK 249

Query: 127 PSVYVFNV----LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
              Y  +     L+H L + G I+ A   +++  + G      + N  I   C++     
Sbjct: 250 SGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPL 309

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF-TTLI 241
              +   M  SG  P++ +Y+ +I+GLCK   +DDA  L  +M + G    DVIF  TLI
Sbjct: 310 AKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLI 369

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
            G CK GR      + +A++++ EM   N   PD +TY  ++DG  K G L+ A  + +E
Sbjct: 370 SGFCKAGR------LSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEE 423

Query: 301 MIKRG 305
           M   G
Sbjct: 424 MQAVG 428


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 179/349 (51%), Gaps = 10/349 (2%)

Query: 118 LEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           L +LD    SP V  +N ++  LC  GK+K A  V D   +R  +   +++  LI   C+
Sbjct: 192 LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + +  +L   M   G  PDV TY+ L+NG+CKE RLD+A   L++M   G  PN + 
Sbjct: 252 DSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT 311

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
              ++   C  GR        +A K++ +M   G +P  +T+ IL++  C++G L  A+D
Sbjct: 312 HNIILRSMCSTGR------WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAID 365

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I ++M K G + +++++  L+ GFC+  K+  A   L  M+  G  PD  TY  ++   C
Sbjct: 366 ILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALC 425

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K+G  +    +L ++ S G  P + TYN +++GL K G+   A  LLD M    + PD I
Sbjct: 426 KDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTI 485

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           TY+ L+ G  + G  ++  K   E    G+  +   + S++    K RQ
Sbjct: 486 TYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQ 534



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 177/343 (51%), Gaps = 14/343 (4%)

Query: 115 GF-YLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF +LE + Y G  P +     L+   C+ GK + A  + +     G     +++N +I+
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMIS 180

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+CKA  ++      SV++   + PDV TY+ ++  LC   +L  A  +L  M +R   P
Sbjct: 181 GYCKAGEINNAL---SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYP 237

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + +T LI+  C++  +       +A K++DEM   G  PD +TY +L++G CKEG L+
Sbjct: 238 DVITYTILIEATCRDSGVG------QAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+    +M   G + + +    ++   C  G+ ++AE++L +ML+ G  P   T+ ++I
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  C+ G       +L++M   G  P   +YN L++G CK  ++  A   L+ M+  G  
Sbjct: 352 NFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           PD +TYN +L   CK G  ED  ++ ++   +S   C   L++
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQ---LSSKGCSPVLIT 451



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 171/356 (48%), Gaps = 44/356 (12%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  + +L+   C++  +  A  + DE   RG     V++N L+NG CK   LDE  + 
Sbjct: 237 PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  SG +P+V T++ ++  +C   R  DAE LL +M  +G +P+ V F  LI+  C+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G +  A D      I+++M  +G  P+ ++Y  LL GFCKE  ++ A++  + M+ RG 
Sbjct: 357 KGLLGRAID------ILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  +++  C+ GKV +A  +L ++   G  P   TY  VID   K G T    +
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 367 LLKEMRSD-----------------------------------GHLPAVETYNALMNGLC 391
           LL EMR+                                    G  P   T+N++M GLC
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLC 530

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
           K  Q   A   L  M++ G  P + +Y IL+EG    G  ++  +L +E   KGL+
Sbjct: 531 KTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 155/293 (52%), Gaps = 9/293 (3%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           + +L + G++++     +     G     +   TLI G C+     +  ++  V+EGSG 
Sbjct: 109 LRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGA 168

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PDV TY+ +I+G CK   +++A  +L  M    ++P+ V + T++   C +G+      
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGK------ 219

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +K+A +++D M      PD ITYTIL++  C++  +  A+ +  EM  RG   D V +  
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNV 279

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++G C+ G++ EA + L +M   G +P+  T+ +++   C  G      +LL +M   G
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             P+V T+N L+N LC+ G L  A  +L+ M   G  P+ ++YN LL G CK 
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKE 392



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 150/306 (49%), Gaps = 29/306 (9%)

Query: 159 GLHATAVSFNTLINGHCKA------KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           GL+  A  F+TL +GH  +       + +  F L+ V   + +R            L + 
Sbjct: 67  GLNGRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDVESNNHLRQ-----------LVRT 115

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
             L++    L  M   G  P+ +  TTLI G C+ G+       ++A KI++ +  +G  
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKT------RKAAKILEVLEGSGAV 169

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD ITY +++ G+CK G++ +AL +   M    +  D V +  ++   C  GK+ +A  +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L  ML+    PD  TYT++I+  C++       +LL EMR  G  P V TYN L+NG+CK
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G+L  A   L+ M   G  P+ IT+NI+L   C  G   D +KL ++   KG       
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346

Query: 450 YTSLVS 455
           +  L++
Sbjct: 347 FNILIN 352



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 10/232 (4%)

Query: 114 LGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           LG  ++IL+    +G  P+   +N L+H  CKE K+  A    +    RG +   V++NT
Sbjct: 360 LGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           ++   CK   +++   + + +   G  P + TY+ +I+GL K  +   A  LL EM  + 
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P+ + +++L+ G  + G++D      EA K   E    G+ P+ +T+  ++ G CK  
Sbjct: 480 LKPDTITYSSLVGGLSREGKVD------EAIKFFHEFERMGVRPNAVTFNSIMLGLCKTR 533

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
             + A+D    MI RG +    ++T LI G    G   EA  +L E+   GL
Sbjct: 534 QTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 167/331 (50%), Gaps = 30/331 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDE 182
           G +P  Y +  ++   CK GK++DA  VFDE    G +   AV +N LI G+C   NL+ 
Sbjct: 178 GIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEV 237

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             R +  M   G+   V TY+  ++ L  E R  +A  L+ EM E+GL P+   +  LI+
Sbjct: 238 ALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILIN 297

Query: 243 GHCKNGR-----------------------------IDMAGDMKEARKIVDEMCTNGLNP 273
           G+CK G+                             + M G ++E  ++ ++    G+ P
Sbjct: 298 GYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRP 357

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D   Y  L++  C  GD++ A +I  EM K+ I  D+V +  L+ G C  G++ EA  ++
Sbjct: 358 DLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLI 417

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EM K G++PD  +Y  +I  +   GD K   ++  EM   G  P + TYNA++ GLC +
Sbjct: 418 EEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLN 477

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           GQ  +A  L+  M+  G+ PDD TY  L+EG
Sbjct: 478 GQGGDAEDLVKEMVGNGITPDDSTYISLIEG 508



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 192/411 (46%), Gaps = 42/411 (10%)

Query: 78  AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
           ++  +  L+     IP      L+  +     P      + +I       S   FN+++ 
Sbjct: 69  SLSLYSRLKSLSLPIPTASLHPLLSSLP----PAPAFVLFADIFRLRLPLSTTTFNIMLR 124

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR-LKSVMEGSGMR 196
            LC  GK   A     E  ++     AV++NT+I G C    +  G   ++ + E  G+ 
Sbjct: 125 HLCTAGKPVRAL----ELLRQMPSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIA 180

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRIDMA-- 253
           PD YTY+ +I+G CK  +++DA  +  EM   G + PN V++  LI G+C  G +++A  
Sbjct: 181 PDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALR 240

Query: 254 ---------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
                                      G   EA  +V+EM   GL PD  TY IL++G+C
Sbjct: 241 YRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYC 300

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           KEG  + A+ + + M+ +GI    V +T+LI      G V E +R+  + ++ G++PD  
Sbjct: 301 KEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLF 360

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            Y  +I+  C  GD    F ++ EM      P   TYN LM GLC  G+L  A  L++ M
Sbjct: 361 MYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEM 420

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
              G+ PD ++YN L+ G+   G+ +D  K++ E   KG       Y +++
Sbjct: 421 TKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMI 471



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 153/284 (53%), Gaps = 6/284 (2%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V L +  E++D G S +V  +N+ +H L  EG+  +A  + +E G++GL   A ++N LI
Sbjct: 237 VALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILI 296

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG+CK     +  ++  VM G G+R  V TY++LI+ L  +  + + + L ++   RG+ 
Sbjct: 297 NGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIR 356

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+  ++  LI+ HC        GDM  A +I+ EM    + PD +TY  L+ G C  G L
Sbjct: 357 PDLFMYNALINSHCT------GGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRL 410

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A  + +EM KRGI+ D V++  LISG+   G + +A ++  EM+  G  P   TY  +
Sbjct: 411 DEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAM 470

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           I   C NG       L+KEM  +G  P   TY +L+ GL    +
Sbjct: 471 IKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDE 514



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 103/242 (42%), Gaps = 64/242 (26%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF----------- 167
           E+ + G +P  + +N+L++  CKEGK K A  +F+    +G+ AT V++           
Sbjct: 279 EMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKG 338

Query: 168 ------------------------NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
                                   N LIN HC   ++D  F +   ME   + PD  TY+
Sbjct: 339 MVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYN 398

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
            L+ GLC   RLD+A  L+ EM +RG+ P+ V + TLI G+   G I  A          
Sbjct: 399 TLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGK 458

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                              G   +A  +V EM  NG+ PD  TY  L++G   E +  +A
Sbjct: 459 GFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDERLAA 518

Query: 295 LD 296
            D
Sbjct: 519 GD 520


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 195/385 (50%), Gaps = 30/385 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C +D + + N   +    + ++   GY P  + +++++  LCK G++  A+ +  +  + 
Sbjct: 43  CFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRES 102

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           G+    ++++ +I+G CKA  +D+   + K++  G G  PDV T+++L+ GLC   R+ +
Sbjct: 103 GVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSE 162

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A +L   M + G  PN + ++TL+DG CK GR+D      EA ++ +EM      PD + 
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLD------EACRLWEEMVEKSCVPDLVA 216

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA-----------------LISGF 320
           YT  + G CK   +  A D  ++M+ +G + D VAF+                  +I   
Sbjct: 217 YTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHL 276

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--- 377
           CR G + EA +   EM+     P    +  +I   CK+     G  L + M+S       
Sbjct: 277 CRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCP 336

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DF 434
           P +ETYN +++ LCK  QL  A  L++ M + G+ PD +TY+ L++G CK G  +   D 
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 435 DKLQSEKGLVSDYACYTSLVSKSSK 459
            +  S++G+  D     S+++  SK
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSK 421



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 23/343 (6%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF----RLKS 188
           N ++  LC+ G + +A   F+E   R    +A  FNTLI+  CK+K L +G     R+KS
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           + E     P++ TY+ +++ LCK  +LD+A+ L++EM   GL+P+ V ++ L+DG CK G
Sbjct: 330 MKEFY-CPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLG 388

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++D A D+      ++EM   G+ PD  T   +L+   K G ++ AL   + M  RG   
Sbjct: 389 KLDRACDL------LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V +  L+ G C+ G++ EA   L +M+     PD  +YT++I   C++G       + 
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +EM   G LP    Y++L++GL ++G    A  LL T L     PD + + ++L+G CK 
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVLDGLCKA 559

Query: 429 GNPEDFDKL---QSEKGLVSDYACYTSLVS------KSSKYRQ 462
           G  ED  ++    ++ G  +D   Y S+VS      K  K RQ
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQ 602



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 172/350 (49%), Gaps = 18/350 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R+ +       + E++   + PS  +FN L+H +CK  ++ D  ++F       
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 160 ---LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
                    ++N +++  CKAK LDE   L + M   G+ PDV TYSAL++GLCK  +LD
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  LL EM + G+ P+     ++++   K G++D A    E  K        G  PD +
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMK------ARGSTPDLV 445

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  LLDG CK G ++ A+    +M+      D  ++T +I+  CR G+   A  + +EM
Sbjct: 446 TYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEM 505

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +K G+ PD   Y  ++D   +NG       LLK        P    +  +++GLCK G+ 
Sbjct: 506 VKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCK---PDFVMHKMVLDGLCKAGKA 562

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
           ++A  +++ M D G   D  TY  ++ G  K G      K+   + LV D
Sbjct: 563 EDACEVVERMADAGFPADAFTYISVVSGLRKLG------KVDKARQLVDD 606



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 178/355 (50%), Gaps = 30/355 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY  SV+ +N  +  L K    + A   F +  +RG      +++ ++ G CKA  LD+ 
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLID 242
             L   +  SG++ +V TYS +I+G CK +R+DDA  +   M    G  P+ V F +L+ 
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLK 152

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C   R      M EA  + + M   G  P+ I+Y+ LLDG CK G L+ A  + +EM+
Sbjct: 153 GLCSGER------MSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMV 206

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT- 361
           ++    D VA+T+ ++G C+  +V EA    R+M+  G K D   ++ VI   CK G   
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE 266

Query: 362 -----------KTGF-----RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML--- 402
                      ++G      +  +EM S  H P+ E +N L++ +CK  +L +  +L   
Sbjct: 267 EAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQR 326

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLV 454
           + +M +    P+  TYNI+++  CK    ++  +L +E    GL  D   Y++LV
Sbjct: 327 MKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 174/383 (45%), Gaps = 52/383 (13%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  FN L+  LC   ++ +A ++F+   K G     +S++TL++G CKA  LDE 
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL   M      PD+  Y++ + GLCK NR+ +A     +M  +G   + V F+T+I  
Sbjct: 199 CRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGI 258

Query: 244 HCKNGRIDMA-----------GDMKEARKIVDEM-------------------CTNGLNP 273
            CK G  + A           G + EA K  +EM                   C +   P
Sbjct: 259 LCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLP 318

Query: 274 DKI-------------------TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D +                   TY I++D  CK   L+ A ++  EM   G+  D V ++
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL+ G C+ GK+  A  +L EM K G+ PD  T   +++   K G        L+ M++ 
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P + TYN L++GLCK G++  A   L  M+     PD  +Y I++   C+ G     
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGA 498

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
             +  E   +G++ D   Y SL+
Sbjct: 499 HAIFQEMVKRGVLPDTVLYHSLL 521



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 32/160 (20%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D + +       + F  +++    +P V+ + +++  LC+ G+   A  +F E  KRG
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509

Query: 160 LHATAVSFNTLINGH--------------------------------CKAKNLDEGFRLK 187
           +    V +++L++G                                 CKA   ++   + 
Sbjct: 510 VLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVV 569

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             M  +G   D +TY ++++GL K  ++D A  L+ +  E
Sbjct: 570 ERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 157/577 (27%), Positives = 246/577 (42%), Gaps = 130/577 (22%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRGTHLPG--L 60
           R+T H Y   VH LV  +M SQA  +L HL ++  G   SA +F+S+L T     P    
Sbjct: 106 RIT-HIYCMAVHILVQAQMPSQAMSVLRHLALT--GFSCSA-IFSSLLRTISRCDPTNLF 161

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
            +D L+  YV  G + DA      + +  F+     C  +++ ++  N       F  E 
Sbjct: 162 SVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKES 221

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           LD  +   V   N++++ LC +GK+  A+ +  +  K      AV++NT++N + K    
Sbjct: 222 LDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKM-KNCRLPNAVTYNTILNWYVKKGRC 280

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND------ 234
               R+   ME +G+  D+YTY+ +I+ LCK  R   A LLL  M E  LTP++      
Sbjct: 281 KSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTL 340

Query: 235 -----------------------------VIFTTLIDGHCKNGRIDMA------------ 253
                                          +T LIDG+C+NGR D A            
Sbjct: 341 IHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGV 400

Query: 254 --GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
              ++ +A++I+  M  +G++PD ITY+ L++G CK G +    +I   M K G+  +NV
Sbjct: 401 RPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNV 460

Query: 312 AFTALISGFC-----------------------------------RGGKVVEAERMLREM 336
            +T L+  FC                                   R G + EAE+  + M
Sbjct: 461 LYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYM 520

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL------ 390
            ++ +  D A++  +ID +C+ G+    F +   M   G  P + TY +L+ GL      
Sbjct: 521 SRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL 580

Query: 391 -----------------------------CKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                                        CKHG L  A  L + M+   ++PD  TY IL
Sbjct: 581 VQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTIL 640

Query: 422 LEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVS 455
           L+G CK G         ++  EKGLV D   YT L++
Sbjct: 641 LDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLN 677



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 53/383 (13%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P    +N L+H    EGKI  A  +F++  ++ L  +  ++  LI+G+C+    DE  R
Sbjct: 331 TPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARR 390

Query: 186 LKSVMEGSGMRP--------------------DVYTYSALINGLCKENRLDDAELLLHEM 225
           +   M+ +G+RP                    DV TYSALING+CK   + + + +L  M
Sbjct: 391 VLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRM 450

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDM 256
            + G+ PN+V++TTL+   CK G    A                             G +
Sbjct: 451 QKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMI 510

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            EA +    M    ++ D  ++  ++D +C+ G++  A  +   M++ G   D   + +L
Sbjct: 511 AEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSL 570

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           + G C+GG +V+A+  +  +L+     D+ T   ++   CK+G       L ++M +   
Sbjct: 571 LRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNI 630

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--- 433
           LP   TY  L++G CK G++  A +LL  ML+ G+VPD I Y  LL G    G  +    
Sbjct: 631 LPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASY 690

Query: 434 -FDKLQSEKGLVSDYACYTSLVS 455
            F ++  ++GL +D   Y S+++
Sbjct: 691 MFQEIICKEGLYADCIAYNSMMN 713



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 175/332 (52%), Gaps = 8/332 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAK 178
           +L+ G  P    +  L++ L  EG++K A  +F E   K GL+A  +++N+++NG+ K  
Sbjct: 660 MLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGG 719

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++E  RL   M  + + P   +Y+ L++G  K+ +L     L  +M + G+ P++V + 
Sbjct: 720 QINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYR 779

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G C+ G I++A  +K   K+V E   +GL P    Y  L++  C+ GD++ A +++
Sbjct: 780 LLIFGLCEYGLIEIA--VKFLEKMVLE--ESGLQPKHTHYIALINAKCRVGDIDGAFELK 835

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M   G+    VA ++++ G C+ GKV EA  +   +++ G+ P  AT+T ++   CK 
Sbjct: 836 EDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKE 895

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                 F L + M S G    V TYN L+ GLC    + +A  L + M   G++P+  TY
Sbjct: 896 FKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTY 955

Query: 419 NILLEGHCKHGNPEDFDKLQ---SEKGLVSDY 447
             L       G  +D +KL     ++G+V  Y
Sbjct: 956 ITLTGAMYATGTMQDGEKLLKDIEDRGIVPSY 987


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 209/429 (48%), Gaps = 34/429 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPGLV 61
           FR +   +S M+  LV+      A +LL  +  +K    +  +F SI    G  H P   
Sbjct: 46  FRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEK-CNITEDIFLSICRAYGRVHKPL-- 102

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
                          DA++ FR ++++      +    +   ++  N   + L FY  + 
Sbjct: 103 ---------------DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMR 147

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQM-VFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           + G  PSV   NVL+  LCK     DA + +F E   RG    + ++ TLING C+   +
Sbjct: 148 EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKI 207

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   L   ME     P V TY++LI+GLC+   LD A  LL EM  +G+ PN   +++L
Sbjct: 208 GEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSL 267

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           +DGHCK      +G    A +++D M +    P+ ITY+ L+ G CKEG L+ A++I   
Sbjct: 268 MDGHCK------SGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDR 321

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM-------VID 353
           M  +G+  D   +  +ISGFC   K  EA   L EM+  G+ P+  T+++       V+ 
Sbjct: 322 MKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQ 381

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C     +  F+L   MR+ G     +T+++L+N  C  G L  A  L+D M+  G +P
Sbjct: 382 GLCTEHPNR-AFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIP 440

Query: 414 DDITYNILL 422
           D++T+N ++
Sbjct: 441 DEVTWNAVV 449



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 142/294 (48%), Gaps = 37/294 (12%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             L  + E+ + G  P  Y +  L++ LC+ GKI +A+ +F E   +    T V++ +LI
Sbjct: 174 AALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLI 233

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G C++K+LD   RL   M   G++P+V+TYS+L++G CK      A  LL  M  R   
Sbjct: 234 HGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHL 293

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEARKI 262
           PN + ++TL+ G CK G++  A ++                              EA   
Sbjct: 294 PNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANF 353

Query: 263 VDEMCTNGLNPDKITYT-------ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +DEM   G++P+++T++       I++ G C E     A  +   M  RGI +D   F +
Sbjct: 354 LDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHP-NRAFQLYLSMRTRGISIDAKTFDS 412

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           L++ FC  G + +A  ++ EM+  G  PD+ T+  V+  F      +    L++
Sbjct: 413 LVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQ 466



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 144/303 (47%), Gaps = 5/303 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+  S   F++++ +L      + A+ +     +   + T   F ++   + +     + 
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+   M+     P   +Y  +   L  EN+L  A      M E G+ P+      LI  
Sbjct: 105 VRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKA 164

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN     +G M  A +I  EM   G  PD  TY  L++G C+ G +  A ++ KEM  
Sbjct: 165 LCKN-----SGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMET 219

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +      V +T+LI G C+   +  A R+L EM   G+KP+  TY+ ++D  CK+G +  
Sbjct: 220 KACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSR 279

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL  M S  HLP + TY+ L++GLCK G+L+ A  +LD M   G+ PD   Y  ++ 
Sbjct: 280 ALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS 339

Query: 424 GHC 426
           G C
Sbjct: 340 GFC 342



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 149/319 (46%), Gaps = 16/319 (5%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           DA  VF +  +     +  S+ T+         L    R    M   G+ P V + + LI
Sbjct: 103 DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLI 162

Query: 207 NGLCKENRLDDAEL-LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
             LCK +   DA L +  EM  RG  P+   + TLI+G C+ G+I       EA+++  E
Sbjct: 163 KALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIG------EAKELFKE 216

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M T   +P  +TYT L+ G C+  DL+SA+ + +EM  +GI+ +   +++L+ G C+ G 
Sbjct: 217 METKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGC 276

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
              A  +L  M+     P+  TY+ ++   CK G  +    +L  M+  G  P    Y  
Sbjct: 277 SSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGK 336

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY-------NILLEGHCKHGNPEDFDKLQ 438
           +++G C   +   A   LD M+  G+ P+ +T+       NI+++G C       F    
Sbjct: 337 IISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYL 396

Query: 439 S--EKGLVSDYACYTSLVS 455
           S   +G+  D   + SLV+
Sbjct: 397 SMRTRGISIDAKTFDSLVN 415



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 138/300 (46%), Gaps = 41/300 (13%)

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G R    T+S +I+ L   N    AE LL  M E      + IF ++   +   GR+  
Sbjct: 44  NGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAY---GRVHK 100

Query: 253 AGD-------MKE-------------------------ARKIVDEMCTNGLNPDKITYTI 280
             D       MKE                         A +    M   G+ P   +  +
Sbjct: 101 PLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNV 160

Query: 281 LLDGFCK-EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           L+   CK  G +++AL I +EM  RG   D+  +  LI+G CR GK+ EA+ + +EM   
Sbjct: 161 LIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETK 220

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              P   TYT +I   C++ D  +  RLL+EM S G  P V TY++LM+G CK G    A
Sbjct: 221 ACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRA 280

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             LLD M+    +P+ ITY+ L+ G CK G  ++     D+++ + GL  D   Y  ++S
Sbjct: 281 LELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQ-GLRPDAGLYGKIIS 339



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 7/212 (3%)

Query: 250 IDMAGDMKEARKIVDEMC---TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           I    D+++A  I D      TNG      T+++++           A ++   M +   
Sbjct: 22  IKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKC 81

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            +    F ++   + R  K ++A R+ R+M +   +P   +Y  V          K   R
Sbjct: 82  NITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALR 141

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKH-GQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
             + MR  G  P+V + N L+  LCK+ G +  A  +   M + G  PD  TY  L+ G 
Sbjct: 142 FYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGL 201

Query: 426 C---KHGNPEDFDKLQSEKGLVSDYACYTSLV 454
           C   K G  ++  K    K        YTSL+
Sbjct: 202 CRLGKIGEAKELFKEMETKACSPTVVTYTSLI 233



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 45/192 (23%)

Query: 118 LEILDYGYS----PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE+LD   S    P++  ++ L+H LCKEGK+++A  + D    +GL   A  +  +I+G
Sbjct: 281 LELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISG 340

Query: 174 HC-------KAKNLDE----------------------------------GFRLKSVMEG 192
            C        A  LDE                                   F+L   M  
Sbjct: 341 FCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRT 400

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+  D  T+ +L+N  C +  L  A  L+ EM   G  P++V +  ++       ++  
Sbjct: 401 RGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRE 460

Query: 253 AGDMKEARKIVD 264
           + ++ +   +V+
Sbjct: 461 SAELVQVELMVE 472


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 182/379 (48%), Gaps = 32/379 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + RT      L  + E L  G     Y  ++L++ LCK+GK+  A+ V +     G
Sbjct: 305 LFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTG 364

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+ ++L   F +   M+   +RPD  TY+ALINGLCK   +  AE
Sbjct: 365 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRI--------DMA------------------ 253
            L+ EM + G+ P+   F TLID +   G++        DM                   
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G + EA  I+D+M    + P+   Y  ++D + + GD E A  + ++M   G+    
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 544

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +  L+ G CR  ++ EAE ++  +   GL+PD  +Y  +I   C  GDT     LL+E
Sbjct: 545 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 604

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P + TY+ L++ L   G++ +   L   ML   V P    Y I+++ + +  N
Sbjct: 605 MNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCEN 664

Query: 431 PEDFDKLQ---SEKGLVSD 446
                 L+   SEKG+  D
Sbjct: 665 DSKVASLKKEMSEKGIAFD 683



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 196/431 (45%), Gaps = 102/431 (23%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + +NV++  L + GK  DA  VFDE    G+    +++NT+I+GH K  +L+ GFRL
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 251

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH-- 244
           +  M   G +P++ TY+ L++GLC+  R+D+  +L+ EM    + P+   ++ L DG   
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 245 ---------------------------------CKNGRIDMAG----------------- 254
                                            CK+G++  A                  
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371

Query: 255 ------------DMKEARKIVDEMCTNGLNPDKITYTILLDGFCK--------------- 287
                       D++ A  I ++M +  + PD ITY  L++G CK               
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 288 --------------------EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
                                G LE    +  +M ++GI+ D ++F +++  FC+ GK+ 
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA  +L +M+   + P+   Y  +ID + ++GDT+  F L+++M++ G   ++ TYN L+
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL 551

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLV 444
            GLC+  Q+  A  L+ T+ + G+ PD ++YN ++   C  G+ +   +L  E    G+ 
Sbjct: 552 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 611

Query: 445 SDYACYTSLVS 455
                Y +LVS
Sbjct: 612 PTLRTYHTLVS 622



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 175/363 (48%), Gaps = 36/363 (9%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+   N+L+  L   G+  D +  F      G      ++N ++     A +LD    +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 187 KSVM---EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
              M   EG+   PD ++Y+ +I GL +  +  DA  +  EM + G+ PN + + T+IDG
Sbjct: 180 VRRMGRSEGAP-PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 244 HCKNGRIDM-----------------------------AGDMKEARKIVDEMCTNGLNPD 274
           H K G ++                              AG M E R ++DEM ++ + PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 298

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+IL DG  + G+  + L +  E +K+G+ L     + L++G C+ GKV +AE++L 
Sbjct: 299 GFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLE 358

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            ++  GL P    Y  +I+ +C+  D +  F + ++M+S    P   TYNAL+NGLCK  
Sbjct: 359 MLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLE 418

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYT 451
            +  A  L+  M   GV P   T+N L++ +   G  E  F  L    +KG+ SD   + 
Sbjct: 419 MVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 478

Query: 452 SLV 454
           S+V
Sbjct: 479 SVV 481



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 141/270 (52%), Gaps = 13/270 (4%)

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEM--CERGLTPNDVIFTTLIDGHCKNGR 249
            +G RPD + ++ ++        LD A  ++  M   E    P+   +  +I G  ++G+
Sbjct: 150 AAGARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGK 209

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +A K+ DEM   G+ P+ ITY  ++DG  K GDLE+   +R +M+  G + +
Sbjct: 210 ------GSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPN 263

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  L+SG CR G++ E   ++ EM    + PD  TY+++ D   + G+++T   L  
Sbjct: 264 IVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFA 323

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK-- 427
           E    G +    T + L+NGLCK G++  A  +L+ ++  G+VP  + YN L+ G+C+  
Sbjct: 324 ESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVR 383

Query: 428 --HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
              G    F++++S + +  D+  Y +L++
Sbjct: 384 DLRGAFCIFEQMKS-RHIRPDHITYNALIN 412



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 159/342 (46%), Gaps = 10/342 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  + A     +L   G     ++ + L+  Y  +  L  A   F  ++  + R    
Sbjct: 346 KDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHI 405

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+ + +  + T      +E+   G  PSV  FN L+      G+++    V  + 
Sbjct: 406 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDM 465

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            ++G+ +  +SF +++   CK   + E   +   M    + P+   Y+++I+   +    
Sbjct: 466 QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDT 525

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           + A LL+ +M   G++ + V +  L+ G C++ +ID      EA +++  +   GL PD 
Sbjct: 526 EQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID------EAEELIYTLRNQGLRPDV 579

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ++Y  ++   C +GD + AL++ +EM K GI      +  L+S     G+V + E + ++
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 639

Query: 336 MLKVGLKPDDATYTMVIDCF--CKNGDTKTGFRLLKEMRSDG 375
           ML   ++P  + Y +++D +  C+N D+K    L KEM   G
Sbjct: 640 MLHKNVEPSSSIYGIMVDAYVRCEN-DSKVA-SLKKEMSEKG 679


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 6/353 (1%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  E+   G+ P V ++N L++ LCK  ++ +A  +     + G + T V++N+L+ 
Sbjct: 190 GFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLME 249

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C++K +D  FRL  VM   G  PDV  Y+ +I GLC++ RLDDA+ LL +M      P
Sbjct: 250 LFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVP 309

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + ++T+IDG CK+ R+D    ++ A +I++ M   G  P+  TY ++++G C+    +
Sbjct: 310 DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQ 369

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            AL + + MI   +  D  +F+ +I   C+   +  A ++   M +   KP+   Y  +I
Sbjct: 370 QALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALI 429

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D   K G+     R+  E+  +   P V TYN++++GLC  G+++ A  +++ M+     
Sbjct: 430 DGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF 488

Query: 413 PDDITYNILLEGHCKHGNPED-FDKLQS--EKGLVSDYACYTSLVSKSSKYRQ 462
           PD  +Y  L+ G C+    E+ ++  Q+   KG   +   Y  LV++  K ++
Sbjct: 489 PDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKR 541



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 186/360 (51%), Gaps = 22/360 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLI 171
            LG++  +     +P +  FN+L+  L K G++++A  +F+            V++ T+I
Sbjct: 84  ALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVI 143

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           NG CK   LD    L  +M  +G  P+V TYS L+ GLCK  R D    LL EM  RG  
Sbjct: 144 NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ +++ TL++G CK+ R+D      EA ++V  M  +G  P  +TY  L++ FC+   +
Sbjct: 204 PDVIMYNTLLNGLCKSRRLD------EALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A  + + M +RG   D + +  +I+G CR  ++ +A+ +L++M+     PD  TY+ +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 352 IDCFCKNGDTKTGFRL------LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
           ID  CK+      ++L      L+ M+  G  P   TY  ++ GLC+  + + A  LL  
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRR 377

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYAC------YTSLVSKSSK 459
           M+D  VVPD  ++++++   CK     D D      G++S+  C      Y +L+   SK
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKS---HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK 434



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 169/314 (53%), Gaps = 7/314 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ + +  L+H LCK GK+  A  + DE   RG+       N +I G CKA    +    
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM-CERGLTPNDVIFTTLIDGHC 245
              + G+   PD+ T++ L++ L K  R+++A  +   M       PN V +TT+I+G C
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G++D       A +++D M   G  P+ ITY++L++G CK G  +    + +EM +RG
Sbjct: 148 KDGKLD------RAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            + D + +  L++G C+  ++ EA  +++ M++ G  P   TY  +++ FC++      F
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAF 261

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           RL++ M   G  P V  YN ++ GLC+  +L +A  LL  M+    VPD ITY+ +++G 
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321

Query: 426 CKHGNPEDFDKLQS 439
           CK    +   KL++
Sbjct: 322 CKDWRVDADWKLEA 335



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 13/327 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            N  ++ L + G+   A  +F E  +R +     ++ +LI+G CKA  LD+ + L   M 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFRE--ERCV-PNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ P V  ++ +I GLCK  R  DA      +     TP+ + F  L+D   K+GR++
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 252 MAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
                 EA +I + M T+    P+ +TYT +++G CK+G L+ A+++   M + G   + 
Sbjct: 118 ------EAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNV 171

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           + ++ L+ G C+ G+  +   +L+EM + G +PD   Y  +++  CK+        L++ 
Sbjct: 172 ITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQL 231

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P V TYN+LM   C+  Q+  A  L+  M + G  PD I YN ++ G C+   
Sbjct: 232 MIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR 291

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            +D   L  +      V D   Y++++
Sbjct: 292 LDDAQALLKQMVAARCVPDVITYSTII 318



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 128/270 (47%), Gaps = 37/270 (13%)

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK-------------IVDE 265
           +L   E C     PN+  + +LI G CK G++D A ++ +  +             ++  
Sbjct: 19  QLFREERC----VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKG 74

Query: 266 MCTNG----------------LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +C  G                  PD IT+ IL+D   K G +E A  I + M      L 
Sbjct: 75  LCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLP 134

Query: 310 NVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           NV  +T +I+G C+ GK+  A  +L  M + G  P+  TY+++++  CK G T  GF LL
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +EM   G  P V  YN L+NGLCK  +L  A  L+  M+  G  P  +TYN L+E  C+ 
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 429 GNPEDFDKL---QSEKGLVSDYACYTSLVS 455
              +   +L    SE+G   D   Y ++++
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIA 284



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 112/250 (44%), Gaps = 34/250 (13%)

Query: 127 PSVYVFNVLMHKLCKEG------KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           P V  ++ ++  LCK+       K++ A  + +   + G    A ++  +I G C+A+  
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            +   L   M  S + PD+ ++S +I  LCK + LD A  +   M ER   PN V +  L
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 241 IDGHCKNGRIDMA----------------------------GDMKEARKIVDEMCTNGLN 272
           IDG  K G +D A                            G ++EA ++V+ M      
Sbjct: 429 IDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF 488

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD  +Y  L+ G C+   +E A ++ + +  +G  ++   +  L++  C+  ++ +A  +
Sbjct: 489 PDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGV 548

Query: 333 LREMLKVGLK 342
             ++++ G K
Sbjct: 549 ANKLIEAGYK 558



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R       L     ++D    P +  F++++  LCK   +  A  +F    +R 
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  LI+G  K   +D+  R+  +M  S  RP V TY+++++GLC   R+++A 
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAV 476

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            ++  M  +   P+   +  LI G C+   ++      EA ++   +   G   +   Y 
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVE------EAYELFQAVEAKGFAMEVGVYN 530

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRG 305
           +L++  CK+  L  A  +  ++I+ G
Sbjct: 531 VLVNELCKKKRLSDAHGVANKLIEAG 556



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           N A   L+    R G+  +A ++ RE   V   P++ TY  +I   CK G     + LL 
Sbjct: 2   NCALNLLV----RAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLD 54

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EMR  G  P V  +N ++ GLCK G+  +A     T+      PD IT+NIL++   K G
Sbjct: 55  EMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSG 114

Query: 430 NPED----FDKLQSEKGLVSDYACYTSLVS 455
             E+    F+ + +    + +   YT++++
Sbjct: 115 RVEEAFQIFESMHTSSQCLPNVVTYTTVIN 144


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 195/385 (50%), Gaps = 30/385 (7%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C +D + + N   +    + ++   GY P  + +++++  LCK G++  A+ +  +  + 
Sbjct: 43  CFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRES 102

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           G+    ++++ +I+G CKA  +D+   + K++  G G  PDV T+++L+ GLC   R+ +
Sbjct: 103 GVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSE 162

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A +L   M + G  PN + ++TL+DG CK GR+D      EA ++ +EM      PD + 
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLD------EACRLWEEMVEKSCVPDLVA 216

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA-----------------LISGF 320
           YT  + G CK   +  A D  ++M+ +G + D VAF+                  +I   
Sbjct: 217 YTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHL 276

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--- 377
           CR G + EA +   EM+     P    +  +I   CK+     G  L + M+S       
Sbjct: 277 CRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCP 336

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DF 434
           P +ETYN +++ LCK  QL  A  L++ M + G+ PD +TY+ L++G CK G  +   D 
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 435 DKLQSEKGLVSDYACYTSLVSKSSK 459
            +  S++G+  D     S+++  SK
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSK 421



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 178/329 (54%), Gaps = 17/329 (5%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF----RLKS 188
           N ++  LC+ G + +A   F+E   R    +A  FNTLI+  CK+K L +G     R+KS
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           + E     P++ TY+ +++ LCK  +LD+A+ L++EM   GL+P+ V ++ L+DG CK G
Sbjct: 330 MKEFY-CPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLG 388

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++D A D+      ++EM   G+ PD  T   +L+   K G ++ AL   + M  RG   
Sbjct: 389 KLDRACDL------LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V +  L+ G C+ G++ EA   L +M+     PD  +YT++I   C++G       + 
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +EM   G LP    Y++L++GL ++G    A  LL T L     PD + + ++++G CK 
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVVDGLCKA 559

Query: 429 GNPEDFDKL---QSEKGLVSDYACYTSLV 454
           G  ED  ++    ++ G  +D   Y ++V
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYINVV 588



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 174/383 (45%), Gaps = 52/383 (13%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  FN L+  LC   ++ +A ++F+   K G     +S++TL++G CKA  LDE 
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL   M      PD+  Y++ + GLCK NR+ +A     +M  +G   + V F+T+I  
Sbjct: 199 CRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGI 258

Query: 244 HCKNGRIDMA-----------GDMKEARKIVDEM-------------------CTNGLNP 273
            CK G  + A           G + EA K  +EM                   C +   P
Sbjct: 259 LCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLP 318

Query: 274 DKI-------------------TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D +                   TY I++D  CK   L+ A ++  EM   G+  D V ++
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL+ G C+ GK+  A  +L EM K G+ PD  T   +++   K G        L+ M++ 
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P + TYN L++GLCK G++  A   L  M+     PD  +Y I++   C+ G     
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGA 498

Query: 435 DKLQSE---KGLVSDYACYTSLV 454
             +  E   +G++ D   Y SL+
Sbjct: 499 HAIFQEMVKRGVLPDTVLYHSLL 521



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 178/355 (50%), Gaps = 30/355 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY  SV+ +N  +  L K    + A   F +  +RG      +++ ++ G CKA  LD+ 
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLID 242
             L   +  SG++ +V TYS +I+G CK +R+DDA  +   M    G  P+ V F +L+ 
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLK 152

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C   R      M EA  + + M   G  P+ I+Y+ LLDG CK G L+ A  + +EM+
Sbjct: 153 GLCSGER------MSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMV 206

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT- 361
           ++    D VA+T+ ++G C+  +V EA    R+M+  G K D   ++ VI   CK G   
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE 266

Query: 362 -----------KTGF-----RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML--- 402
                      ++G      +  +EM S  H P+ E +N L++ +CK  +L +  +L   
Sbjct: 267 EAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQR 326

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLV 454
           + +M +    P+  TYNI+++  CK    ++  +L +E    GL  D   Y++LV
Sbjct: 327 MKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 172/350 (49%), Gaps = 18/350 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R+ +       + E++   + PS  +FN L+H +CK  ++ D  ++F       
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 160 ---LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
                    ++N +++  CKAK LDE   L + M   G+ PDV TYSAL++GLCK  +LD
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  LL EM + G+ P+     ++++   K G++D A    E  K        G  PD +
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMK------ARGSTPDLV 445

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  LLDG CK G ++ A+    +M+      D  ++T +I+  CR G+   A  + +EM
Sbjct: 446 TYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEM 505

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +K G+ PD   Y  ++D   +NG       LLK        P    +  +++GLCK G+ 
Sbjct: 506 VKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCK---PDFVMHKMVVDGLCKAGKA 562

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
           ++A  +++ M D G   D  TY  ++ G  K G      K+   + LV D
Sbjct: 563 EDACEVVERMADAGFPADAFTYINVVRGLRKLG------KVDKARQLVDD 606



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 32/160 (20%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D + +       + F  +++    +P V+ + +++  LC+ G+   A  +F E  KRG
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509

Query: 160 LHATAVSFNTL--------------------------------INGHCKAKNLDEGFRLK 187
           +    V +++L                                ++G CKA   ++   + 
Sbjct: 510 VLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVV 569

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             M  +G   D +TY  ++ GL K  ++D A  L+ +  E
Sbjct: 570 ERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASE 609


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 218/480 (45%), Gaps = 60/480 (12%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILET--RGTHLPGL-VLDALMIVYVDLGFLDDA-- 78
           + +RD+   I+ K G   +  L   ++    R  H  GL ++ + +  Y  L   DDA  
Sbjct: 87  TPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFD 146

Query: 79  ----------IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                     +Q    +  H   + A G +    +++ +         Y E+   G  P 
Sbjct: 147 LVSNQLDMFGVQANTEVYNHLLTVLAEGSKI---KLLESA--------YTEMSSQGIEPD 195

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  FN ++  LC+  + + A ++ +E     +     +F TL+ G  +  +++   RLK+
Sbjct: 196 VVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKA 255

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G  P   T + LING CK  R+ DA   + +    G  P+ V F+T ++G C+NG
Sbjct: 256 RMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNG 315

Query: 249 RIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYT 279
            +D A                             G+++EA+ IV++M  +G  PD  T+ 
Sbjct: 316 HVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFN 375

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+   C E  LE ALD+ +E+  +G+  +   F  LI+  C+ G    A R+  EM   
Sbjct: 376 TLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSS 435

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD+ TY ++ID  C +G       LLKEM   G   +  TYN +++GLCK  +++ A
Sbjct: 436 GCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEA 495

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             + D M   G+  + IT+N L++G C     +D     D++ SE GL  +   Y S+++
Sbjct: 496 EEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISE-GLQPNNVTYNSILT 554



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 177/344 (51%), Gaps = 10/344 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   +++D G  P    FN L+  LC E ++++A  +  E   +GL     +FN LIN  
Sbjct: 357 GIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINAL 416

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK  +     RL   M+ SG  PD  TY+ LI+ LC   +L  A  LL EM   G   + 
Sbjct: 417 CKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQST 476

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + T+IDG CK  RI+      EA ++ D+M   G+  + IT+  L+DG C    ++ A
Sbjct: 477 VTYNTIIDGLCKRRRIE------EAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDA 530

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            ++  +MI  G++ +NV + ++++ +C+ G + +A  +L+ M   G + D  TY  +I+ 
Sbjct: 531 AELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLING 590

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK   T+   +LL+ MR  G  P  + YN ++  L +    ++A  L   M ++G  PD
Sbjct: 591 LCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPD 650

Query: 415 DITYNILLEGHCKHGNP--EDFDKL--QSEKGLVSDYACYTSLV 454
             TY I+  G C+ G P  E FD L   ++ G + +++ +  L 
Sbjct: 651 AFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLA 694



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 161/335 (48%), Gaps = 29/335 (8%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G SP+    NVL++  CK G++ DA     +    G     V+F+T +NG C+  ++D
Sbjct: 259 EMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVD 318

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
              ++  +M   G  PDVYTYS +IN LC    L++A+ ++++M + G  P+   F TLI
Sbjct: 319 HALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLI 378

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
              C   +++ A                             GD   A ++ +EM ++G  
Sbjct: 379 VALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCT 438

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD++TY IL+D  C  G L  ALD+ KEM   G     V +  +I G C+  ++ EAE +
Sbjct: 439 PDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEV 498

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             +M   G+  +  T+  +ID  C          L+ +M S+G  P   TYN+++   CK
Sbjct: 499 FDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCK 558

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            G +  A  +L TM   G   D +TY  L+ G CK
Sbjct: 559 QGNISKAADILQTMTANGFEVDVVTYATLINGLCK 593



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 151/296 (51%), Gaps = 7/296 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +   P + +  + E+   G +P    +N+L+  LC  GK+  A  +  E    G
Sbjct: 412 LINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG 471

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              + V++NT+I+G CK + ++E   +   M+ +G+  +  T++ LI+GLC   R+DDA 
Sbjct: 472 CPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAA 531

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ +M   GL PN+V + +++  +CK G I  A D      I+  M  NG   D +TY 
Sbjct: 532 ELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAAD------ILQTMTANGFEVDVVTYA 585

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++G CK    ++AL + + M  +G++    A+  +I    RG    +A  + REM +V
Sbjct: 586 TLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEV 645

Query: 340 GLKPDDATYTMVIDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           G  PD  TY +V    C+  G  K  F  L EM  +G +P   ++  L  GL   G
Sbjct: 646 GGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLG 701



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 8/265 (3%)

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+ P    Y  +I  L      D  ++L+ EM   G      +  + I  + +    D A
Sbjct: 85  GLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDA 144

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            D+     + +++   G+  +   Y  LL    +   ++       EM  +GIE D V F
Sbjct: 145 FDL-----VSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTF 199

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             +I   CR  +   A  ML EM    + PD+ T+T +++ F + G  +   RL   M  
Sbjct: 200 NTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSE 259

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   T N L+NG CK G++ +A   +   +  G  PD +T++  + G C++G+ + 
Sbjct: 260 MGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDH 319

Query: 434 FDK---LQSEKGLVSDYACYTSLVS 455
             K   L  ++G   D   Y+++++
Sbjct: 320 ALKVLGLMLQEGCEPDVYTYSTVIN 344


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 188/334 (56%), Gaps = 16/334 (4%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNLDEGFRLKS 188
           Y +N L++ L   G+ +DA  +F+ + + GL++  V SFN +I G C+  N  +   L  
Sbjct: 180 YAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVE 239

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLIDGHCKN 247
            M   G  PD  T++ L++GLC+  +++    +L  +   G+  PN V +T++I G+CK 
Sbjct: 240 RMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCK- 298

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                AG M++A  + ++M  +G  P+ +TY +L++G+ K  D+ESA+ + +++I R   
Sbjct: 299 -----AGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCP 353

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V F++LI G+CR G++ +A+R+ +EM    ++P+  T++++I   CK   +     +
Sbjct: 354 PDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDI 413

Query: 368 LKE--MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           L+E  MR+D   P    YN +++ LCK G++  AN+++  M + G  PD  TY IL+ GH
Sbjct: 414 LRELNMRTD-IAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGH 472

Query: 426 CKHGN-PED---FDKLQSEKGLVSDYACYTSLVS 455
           C  G  PE    F K+  E G   D     S VS
Sbjct: 473 CMKGRIPEAITLFHKM-VEAGCRPDNITVNSFVS 505



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 175/336 (52%), Gaps = 11/336 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   I D  YSP V+ FNV++  +C+ G  + A  + +   + G     ++ N L++G C
Sbjct: 202 FESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLC 261

Query: 176 KAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           +AK +++G  +   ++  G+  P+  TY+++I+G CK  +++DA  + ++M E G  PN 
Sbjct: 262 RAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNT 321

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +  LI+G+ K   +DM   ++  R+++   C     PD +T++ L+DG+C+ G L+ A
Sbjct: 322 VTYNVLINGYGKA--LDMESAVRMYRQLILRHCP----PDVVTFSSLIDGYCRCGQLDDA 375

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVID 353
             I KEM    I+ +   F+ +I   C+  +  EA  +LRE+ ++  + P    Y  VID
Sbjct: 376 KRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVID 435

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G       ++ +M+  G  P   TY  L+ G C  G++  A  L   M++ G  P
Sbjct: 436 ILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRP 495

Query: 414 DDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSD 446
           D+IT N  +    K G P + D+   + S  GL S 
Sbjct: 496 DNITVNSFVSCVLKAGMPNEVDQIMLIASGHGLASQ 531



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC-KAKNLDEGFR 185
           PS   +  ++  LC+ G+ +DA  +FD+   +  +     F + + G C  A  LD    
Sbjct: 106 PSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAAST 165

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI-FTTLIDGH 244
           L +     G   + Y Y+ L+N L    R  DA  L     + GL   DV  F  +I G 
Sbjct: 166 LLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGV 225

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C+       G+ ++A ++V+ M   G +PD IT+ IL+DG C+   +    ++ + + + 
Sbjct: 226 CR------MGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRD 279

Query: 305 GIELDN-VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           G+ + N V +T++ISG+C+ GK+ +A  +  +ML+ G +P+  TY ++I+ + K  D ++
Sbjct: 280 GVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMES 339

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R+ +++      P V T+++L++G C+ GQL +A  +   M    + P+  T++I++ 
Sbjct: 340 AVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIH 399

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYACYT 451
             CK     +   +  E  + +D A  T
Sbjct: 400 SLCKQNRSAEALDILRELNMRTDIAPQT 427



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  Y ++L+ G  P+   +NVL++   K   ++ A  ++ +   R      V+F++LI+
Sbjct: 305 AMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLID 364

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LT 231
           G+C+   LD+  R+   M    ++P+VYT+S +I+ LCK+NR  +A  +L E+  R  + 
Sbjct: 365 GYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIA 424

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P   I+  +ID  CK G++D      EA  IV +M   G +PDK TYTIL+ G C +G +
Sbjct: 425 PQTFIYNPVIDILCKGGKVD------EANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRI 478

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
             A+ +  +M++ G   DN+   + +S   + G   E ++++
Sbjct: 479 PEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIM 520



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 6/196 (3%)

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE- 328
            + P + +Y  ++   C+ G    AL +  +M+ +   L    F + ++G C    +++ 
Sbjct: 103 SVPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDA 162

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG-HLPAVETYNALM 387
           A  +L +  ++G   +   Y  +++    +G  +    L +    DG + P V ++N ++
Sbjct: 163 ASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVI 222

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSEKGL 443
            G+C+ G  + A  L++ M + G  PD IT+NIL++G C+    +   E   +LQ +   
Sbjct: 223 KGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVC 282

Query: 444 VSDYACYTSLVSKSSK 459
           + +   YTS++S   K
Sbjct: 283 MPNAVTYTSVISGYCK 298



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 1/177 (0%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +   +L+  Y   G LDDA + ++ +  H+ +        +I  + + N     L    E
Sbjct: 357 VTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRE 416

Query: 120 I-LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           + +    +P  +++N ++  LCK GK+ +A ++  +  ++G H    ++  LI GHC   
Sbjct: 417 LNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKG 476

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            + E   L   M  +G RPD  T ++ ++ + K    ++ + ++      GL    V
Sbjct: 477 RIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIASGHGLASQKV 533



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 37/130 (28%)

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR-SDGHLP------------------ 378
            + + P + +Y  VI   C++G  +   +L  +M    G+LP                  
Sbjct: 101 PLSVPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLL 160

Query: 379 -AVET----------------YNALMNGLCKHGQLKNANMLLDTMLDLGVV-PDDITYNI 420
            A  T                YN L+N L  HG+ ++A  L ++ +  G+  PD  ++N+
Sbjct: 161 DAASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNV 220

Query: 421 LLEGHCKHGN 430
           +++G C+ GN
Sbjct: 221 VIKGVCRMGN 230


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 182/379 (48%), Gaps = 32/379 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + RT      L  + E L  G     Y  ++L++ LCK+GK+  A+ V +     G
Sbjct: 127 LFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTG 186

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+ ++L   F +   M+   +RPD  TY+ALINGLCK   +  AE
Sbjct: 187 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 246

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRI--------DMA------------------ 253
            L+ EM + G+ P+   F TLID +   G++        DM                   
Sbjct: 247 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 306

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G + EA  I+D+M    + P+   Y  ++D + + GD E A  + ++M   G+    
Sbjct: 307 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 366

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +  L+ G CR  ++ EAE ++  +   GL+PD  +Y  +I   C  GDT     LL+E
Sbjct: 367 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 426

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P + TY+ L++ L   G++ +   L   ML   V P    Y I+++ + +  N
Sbjct: 427 MNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCEN 486

Query: 431 PEDFDKLQ---SEKGLVSD 446
                 L+   SEKG+  D
Sbjct: 487 DSKVASLKKEMSEKGIAFD 505



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 172/335 (51%), Gaps = 29/335 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + +NV++  L + GK  DA  VFDE    G+    +++NT+I+GH K  +L+ GFRL
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M   G +P++ TY+ L++GLC+  R+D+  +L+ EM    + P+   ++ L DG  +
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
            G                                  G + +A ++++ +   GL P  + 
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++G+C+  DL  A  I ++M  R I  D++ + ALI+G C+   V +AE ++ EM 
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           K G+ P   T+  +ID +   G  +  F +L +M+  G    V ++ +++   CK+G++ 
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 313

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            A  +LD M+   V P+   YN +++ + + G+ E
Sbjct: 314 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 348



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 189/381 (49%), Gaps = 46/381 (12%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  ++L  G  P++  +NVL+  LC+ G++ + +++ DE     +     +++ L +
Sbjct: 70  GFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFD 129

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +         L +     G+    YT S L+NGLCK+ ++  AE +L  +   GL P
Sbjct: 130 GLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVP 189

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK----- 287
             VI+ TLI+G+C+        D++ A  I ++M +  + PD ITY  L++G CK     
Sbjct: 190 TTVIYNTLINGYCQ------VRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 243

Query: 288 ------------------------------EGDLESALDIRKEMIKRGIELDNVAFTALI 317
                                          G LE    +  +M ++GI+ D ++F +++
Sbjct: 244 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 303

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
             FC+ GK+ EA  +L +M+   + P+   Y  +ID + ++GDT+  F L+++M++ G  
Sbjct: 304 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVS 363

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            ++ TYN L+ GLC+  Q+  A  L+ T+ + G+ PD ++YN ++   C  G+ +   +L
Sbjct: 364 ASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALEL 423

Query: 438 QSEK---GLVSDYACYTSLVS 455
             E    G+      Y +LVS
Sbjct: 424 LQEMNKYGIRPTLRTYHTLVS 444



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 154/294 (52%), Gaps = 9/294 (3%)

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
           A S+N +I G  ++    +  ++   M   G+ P+  TY+ +I+G  K   L+    L  
Sbjct: 16  AFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRD 75

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           +M   G  PN V +  L+ G C+ GR+D      E R ++DEM ++ + PD  TY+IL D
Sbjct: 76  QMLHDGPKPNIVTYNVLLSGLCRAGRMD------ETRVLMDEMASHSMFPDGFTYSILFD 129

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G  + G+  + L +  E +K+G+ L     + L++G C+ GKV +AE++L  ++  GL P
Sbjct: 130 GLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVP 189

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
               Y  +I+ +C+  D +  F + ++M+S    P   TYNAL+NGLCK   +  A  L+
Sbjct: 190 TTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLV 249

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYTSLV 454
             M   GV P   T+N L++ +   G  E  F  L    +KG+ SD   + S+V
Sbjct: 250 MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 303



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 11/233 (4%)

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
           E    P+   +  +I G  ++G+        +A K+ DEM   G+ P+ ITY  ++DG  
Sbjct: 9   EGAPPPDAFSYNVVIAGLWRSGK------GSDALKVFDEMVDMGVVPNWITYNTMIDGHV 62

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K GDLE+   +R +M+  G + + V +  L+SG CR G++ E   ++ EM    + PD  
Sbjct: 63  KGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGF 122

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           TY+++ D   + G+++T   L  E    G +    T + L+NGLCK G++  A  +L+ +
Sbjct: 123 TYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML 182

Query: 407 LDLGVVPDDITYNILLEGHCK----HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           +  G+VP  + YN L+ G+C+     G    F++++S + +  D+  Y +L++
Sbjct: 183 VHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS-RHIRPDHITYNALIN 234



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 159/342 (46%), Gaps = 10/342 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G  + A     +L   G     ++ + L+  Y  +  L  A   F  ++  + R    
Sbjct: 168 KDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHI 227

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+ + +  + T      +E+   G  PSV  FN L+      G+++    V  + 
Sbjct: 228 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDM 287

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            ++G+ +  +SF +++   CK   + E   +   M    + P+   Y+++I+   +    
Sbjct: 288 QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDT 347

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           + A LL+ +M   G++ + V +  L+ G C++ +ID      EA +++  +   GL PD 
Sbjct: 348 EQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID------EAEELIYTLRNQGLRPDV 401

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ++Y  ++   C +GD + AL++ +EM K GI      +  L+S     G+V + E + ++
Sbjct: 402 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 461

Query: 336 MLKVGLKPDDATYTMVIDCF--CKNGDTKTGFRLLKEMRSDG 375
           ML   ++P  + Y +++D +  C+N D+K    L KEM   G
Sbjct: 462 MLHKNVEPSSSIYGIMVDAYVRCEN-DSKVA-SLKKEMSEKG 501


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 181/344 (52%), Gaps = 10/344 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   +++D G  P    FN L+  L  + ++++A  +  E   +GL     +FN LIN  
Sbjct: 358 GIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 417

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK  +   G RL   M+ SG  PD  TY+ LI+ LC   +L +A  LL+EM   G   + 
Sbjct: 418 CKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRST 477

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + T+ID  CK  RI+      EA ++ D+M   G++   +T+  L+DG CK   ++ A
Sbjct: 478 VTYNTIIDALCKKMRIE------EAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDA 531

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            ++ ++M+K G++ +N+ + ++++ +C+ G + +A  +L  M   G + D  TY  +I+ 
Sbjct: 532 TELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLING 591

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK G T+   +LL+ MR  G  P  + YN ++  L +   L++A  L   M ++G  PD
Sbjct: 592 LCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPD 651

Query: 415 DITYNILLEGHCKHGNP--EDFDKLQS--EKGLVSDYACYTSLV 454
            +TY I+    C+ G P  E FD L     KG + +++ +  L 
Sbjct: 652 ALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLA 695



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 213/452 (47%), Gaps = 17/452 (3%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASI---LETRGTHLPGLVLDALMIVY 69
           M++  +A +  + +  +   IV K G   +  L   +   +   G  +  +V+ + +  Y
Sbjct: 75  MLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESY 134

Query: 70  VDLGFLDDAIQ-CFRLLRKHYFRIPARGC--RCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             L   DDA+      L    F + A       L++ ++  +   +    Y E+   G  
Sbjct: 135 ARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQ 194

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   N L+  LC+  +++ A ++ +E    G+     +F TL+ G  +  +++   R+
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K+ M  +G  P   T + LING CK  R++DA   + +    G  P+ V + T + G C+
Sbjct: 255 KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQ 314

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NG +        A K++D M   G +PD  TY  +++   K G+L+ A  I  +M+ RG 
Sbjct: 315 NGHV------SHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 368

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   F  LI       ++ EA  + RE+   GL PD  T+ ++I+  CK GD   G R
Sbjct: 369 LPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 428

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L +EM+S G  P   TYN L++ LC  G+L NA  LL+ M   G     +TYN +++  C
Sbjct: 429 LFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALC 488

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           K    E+    FD++ ++ G+      + +L+
Sbjct: 489 KKMRIEEAEEVFDQMDAQ-GISRSAVTFNTLI 519



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 184/404 (45%), Gaps = 25/404 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIV------------------SKKGMGSSASLFASILE 51
           Y+T VH L  +   S A  ++ L++                  SK G    A    + + 
Sbjct: 305 YNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
            RG        + L++       L++A+   R L              LI+ + +   P 
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPH 424

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + +  + E+   G +P    +N+L+  LC  GK+ +A  + +E    G   + V++NT+I
Sbjct: 425 LGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTII 484

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +  CK   ++E   +   M+  G+     T++ LI+GLCK  R+DDA  L+ +M + GL 
Sbjct: 485 DALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 544

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN++ + +++  +CK G I  A D      I++ M  NG   D +TY  L++G CK G  
Sbjct: 545 PNNITYNSILTHYCKQGNIKKAAD------ILETMTANGFEIDVVTYGTLINGLCKAGRT 598

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + AL + + M  +GI     A+  +I    R   + +A  + REM +VG  PD  TY +V
Sbjct: 599 QVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIV 658

Query: 352 IDCFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
               C+  G  K  F  L EM + G +P   ++  L  GL   G
Sbjct: 659 FRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 173/337 (51%), Gaps = 12/337 (3%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++PS  V+  ++ KL   G     + +  E  + G    AV   + +  + + +  D+  
Sbjct: 85  FAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAV 144

Query: 185 RL---KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
            L   +   +  G++ D   ++ L+N L + ++L   E + +EM  RG+ P+ V   TLI
Sbjct: 145 DLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLI 204

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
              C+      A  ++ A  +++EM ++G+ PD+ T+T L+ GF +EG +E+AL ++ +M
Sbjct: 205 KALCR------AHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKM 258

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G     V    LI+G+C+ G+V +A   +++ +  G +PD  TY   +   C+NG  
Sbjct: 259 MEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHV 318

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               +++  M  +GH P V TYN ++N L K+G+L  A  +++ M+D G +PD  T+N L
Sbjct: 319 SHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTL 378

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           +         E+   L  E   KGL  D   +  L++
Sbjct: 379 IVALSSQNRLEEALDLARELTVKGLSPDVYTFNILIN 415


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 195/409 (47%), Gaps = 33/409 (8%)

Query: 47  ASILETRGTHLPGLV--LDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A +L+   T  P  V  L A ++V  Y   G +  A Q    + +H  ++ A     L+D
Sbjct: 51  ADLLKQAATSCPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLD 110

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              R             + + G  P+V  + +L+  L     I   + VF+E   + L  
Sbjct: 111 AYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSG 170

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
               ++++IN +C+A N+     +     G+G+ P+ +TY ALING CK  +++ AE+L+
Sbjct: 171 DVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLV 230

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK------------------------- 257
            +M  RG+  N ++F T+IDG+C+   +D A ++K                         
Sbjct: 231 TDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRA 290

Query: 258 ----EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA+ ++  M   G+ P+ ++YT L+   C EGD+  A  + +EM   G E   V +
Sbjct: 291 NRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTY 350

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G+ + G + EAER   EM K GL PD  +Y  ++   C NG      RL +EM+ 
Sbjct: 351 NVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQ 410

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            G  P +  Y AL++GL K G+ + A  L D ML  G+ PDD  Y+ L+
Sbjct: 411 RGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 459



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 155/272 (56%), Gaps = 6/272 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G  P+ + +  L++  CK G+++ A+M+  +   RG+    + FNT+I+G+C+  
Sbjct: 197 ECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKN 256

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+   +K +ME  G+  DVYTY+ L  GL + NR+D+A+ LL  M E+G+ PN V +T
Sbjct: 257 MVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYT 316

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  HC  G      DM EAR++  EM  NG  P  +TY +++DG+ K+G +  A   +
Sbjct: 317 TLISIHCNEG------DMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 370

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM K+G+  D  ++ AL+ G C  GKV  A R+  EM + G KP+   YT +I    K 
Sbjct: 371 NEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKE 430

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L   M  DG  P    Y+AL+  L
Sbjct: 431 GRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 462



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 187/365 (51%), Gaps = 44/365 (12%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           +V++   CK G++  A+ + DE  + G+   A+ +N+L++ + + K+ D    +  VME 
Sbjct: 71  SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 130

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P V TY+ L++GL     +   E +  EM  + L+ +   ++++I+ +C+      
Sbjct: 131 EGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCR------ 184

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           AG+++ A ++ DE   NG+ P++ TY  L++GFCK G +E+A  +  +M  RG+ ++ + 
Sbjct: 185 AGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIV 244

Query: 313 FTALISGFCR-----------------------------------GGKVVEAERMLREML 337
           F  +I G+CR                                     ++ EA+ +LR M+
Sbjct: 245 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 304

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + G++P+  +YT +I   C  GD     RL +EM  +G  P++ TYN +M+G  K G ++
Sbjct: 305 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 364

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            A    + M   G+VPD  +Y  L+ GHC +G  +   +L  E   +G   +   YT+L+
Sbjct: 365 EAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 424

Query: 455 SKSSK 459
           S  +K
Sbjct: 425 SGLAK 429



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 11/216 (5%)

Query: 215 LDDAELLLHEM---CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           LD A  LL +    C   +TP  +  + ++DG+CK+GR+        AR+++DEM  +G+
Sbjct: 47  LDTAADLLKQAATSCPDSVTP--LSASVVVDGYCKSGRV------AHARQLLDEMPRHGV 98

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             + + Y  LLD + +E D +   ++ K M   GIE     +T L+ G      + + E 
Sbjct: 99  KVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEA 158

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +  EM    L  D   Y+ VI+ +C+ G+ +    +  E   +G  P   TY AL+NG C
Sbjct: 159 VFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFC 218

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           K GQ++ A ML+  M   GV  + I +N +++G+C+
Sbjct: 219 KIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 254



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 17/207 (8%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
             L ++ Y+T+   L       +A++LL +++ K                R  H+     
Sbjct: 273 IELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKG--------------VRPNHVS---Y 315

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
             L+ ++ + G + +A + FR +  +           ++D  ++         F  E+  
Sbjct: 316 TTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEK 375

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P +Y +  L+H  C  GK+  A  +F+E  +RG     V++  LI+G  K    +E
Sbjct: 376 KGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEE 435

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGL 209
            F+L   M G G+ PD   YSAL+  L
Sbjct: 436 AFQLYDNMLGDGLTPDDALYSALVGSL 462


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 230/487 (47%), Gaps = 49/487 (10%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP--GLVLDALMIVYVDL 72
           H L+A ++H        L+ +    G+ A   +++ + +G  L    +  + L+  +   
Sbjct: 198 HSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRK 257

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGC-RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           G L +A      ++K    +P R     L+    R             +  +G+ P ++ 
Sbjct: 258 GMLGEARTLLARMKKEGI-VPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWT 316

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVM 190
           +NVL   LC+ GK+ +A  + DE  + G+ +   V++NTL++   K +   +   L   M
Sbjct: 317 YNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEM 376

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
              G++  + T++ ++ GLC+E +L++A   L  M E GLTP+ + + TLID  CK    
Sbjct: 377 REKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCK---- 432

Query: 251 DMAGDMKEARKIVDEMCTNGLN-----------------------------------PDK 275
             AG++ +A  ++DEM  +GL                                    PD+
Sbjct: 433 --AGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDE 490

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ++Y  ++  + KE   E AL +  EMIKR +      +  LI G    GK+ EA   L E
Sbjct: 491 VSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNE 550

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ++++GL PDD TY ++I  +CK GD +  F+   +M  +   P V T N LMNGLC +G+
Sbjct: 551 LMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGR 610

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
           L+ A  L ++ ++ G   D ITYN L++  CK  + +   +  ++   +GL  D   Y  
Sbjct: 611 LEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNV 670

Query: 453 LVSKSSK 459
           L+S  S+
Sbjct: 671 LLSALSE 677



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 165/340 (48%), Gaps = 29/340 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +    +  L    E+ + G   S+   N+++  LC+EG++++A    +   + G
Sbjct: 356 LVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEG 415

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++NTLI+  CKA N+ + F L   M  SG++ D +T + L+  LCKE R ++AE
Sbjct: 416 LTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAE 475

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            LL    +RG  P++V + T++  + K  + + A                          
Sbjct: 476 ELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGL 535

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G + EA   ++E+   GL PD  TY I++  +CKEGDLE A     +M++   + D 
Sbjct: 536 STMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDV 595

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V    L++G C  G++ +A ++    ++ G K D  TY  +I   CK+ D  T  R   +
Sbjct: 596 VTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFAD 655

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           M   G  P V TYN L++ L + G+   A  +L  + + G
Sbjct: 656 MEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG 695



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 138/327 (42%), Gaps = 58/327 (17%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           GF+ D +    ++  ++         CL D M++  L                +PS+  +
Sbjct: 485 GFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKL----------------TPSISTY 528

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L+  L   GK+ +A    +E  + GL     ++N +I+ +CK  +L++ F+  + M  
Sbjct: 529 NTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVE 588

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +  +PDV T + L+NGLC   RL+ A  L     E+G   + + + TLI   CK+  +D 
Sbjct: 589 NSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDT 648

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG----------------------- 289
           A       +   +M   GL PD  TY +LL    + G                       
Sbjct: 649 A------LRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFF 702

Query: 290 ------DLESALDIRKEMIKRGIEL-------DNVAFTALISGFCRGGKVVEAERMLREM 336
                  +E+    +   +K  IE        D  ++   I   C GG++ EA+ +L EM
Sbjct: 703 YPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEM 762

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKT 363
           ++ G+  D++TY  +++   K    +T
Sbjct: 763 MQKGMSVDNSTYITLMEGLIKRQKRQT 789



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           +++LD    +I   +  ++  F  L+   C  G + +A   L +M   GL PD  TY  +
Sbjct: 191 QASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTL 250

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  C+ G       LL  M+ +G +P   TYN L++   + G +K A  +++ M   G 
Sbjct: 251 LNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGF 310

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVS-DYACYTSLV 454
            PD  TYN+L  G C+ G  ++  KL+ E    G+VS D   Y +LV
Sbjct: 311 EPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLV 357


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 213/450 (47%), Gaps = 61/450 (13%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y+T++  L      ++ARDLL   +  K  G        +L  R T       + L+  
Sbjct: 249 SYNTILDVLCKKGKLNEARDLL---LDMKNNG--------LLPNRNT------FNILVSG 291

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  LG+L +A Q                   +ID M + N+                 P 
Sbjct: 292 YCKLGWLKEAAQ-------------------VIDLMAQNNVL----------------PD 316

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ +N+L+  LCK+GKI +A  + DE     L    V++NTLING     +  +GF L  
Sbjct: 317 VWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELID 376

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            MEG G++P+  TY+ ++    KE ++D+A   L +M E G +P+ V F TLI+G+CK G
Sbjct: 377 KMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAG 436

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R+       EA +++DEM   GL  + +T   +L   C E  L+ A  +     KRG  +
Sbjct: 437 RLS------EAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFV 490

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V++  LI G+ + GK VEA ++  EM +  + P   TY  +I   C +G T      L
Sbjct: 491 DEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKL 550

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            E+   G +P   TYN ++ G C+ GQ++ A    + M+     PD  T NILL G C  
Sbjct: 551 NELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTE 610

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           G  +   KL +    KG   D   Y +++S
Sbjct: 611 GMLDKALKLFNTWISKGKAIDAVTYNTIIS 640



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 166/326 (50%), Gaps = 9/326 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +NV++    KEGK+ +A     +  + G     V+FNTLING+CKA  L E 
Sbjct: 382 GVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEA 441

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FR+   M   G++ +  T + +++ LC E +LDDA  LL    +RG   ++V + TLI G
Sbjct: 442 FRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMG 501

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K+G+        EA K+ DEM    + P  ITY  ++ G C  G  + ++D   E+++
Sbjct: 502 YFKDGK------SVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLE 555

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D   +  +I G+CR G+V +A +   +M+K   KPD  T  +++   C  G    
Sbjct: 556 SGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDK 615

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L     S G      TYN +++GLCK  + + A  LL  M +  + PD  TYN +L 
Sbjct: 616 ALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILS 675

Query: 424 GHCKHGNPEDFDKLQS---EKGLVSD 446
                G  ++ ++  S   E+G + D
Sbjct: 676 ALADAGRMKEAEEFMSRIVEQGKLQD 701



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 183/398 (45%), Gaps = 41/398 (10%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++LD  +  YV       A Q F  +++ + +     C  LI+ ++R             
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVR------------- 186

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
              Y   PSVY+                ++ +F +  K G+     +FN LI G C    
Sbjct: 187 ---YPSKPSVYL----------------SKAIFSDVIKLGVKVNTNTFNILIYGCCIENK 227

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L E   L   M+     PD  +Y+ +++ LCK+ +L++A  LL +M   GL PN   F  
Sbjct: 228 LSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNI 287

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+ G+CK       G +KEA +++D M  N + PD  TY +L+ G CK+G ++ A  ++ 
Sbjct: 288 LVSGYCK------LGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKD 341

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM    +  D V +  LI+G       ++   ++ +M   G+KP+  TY +V+  + K G
Sbjct: 342 EMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEG 401

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                   L++M   G  P   T+N L+NG CK G+L  A  ++D M   G+  + +T N
Sbjct: 402 KMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLN 461

Query: 420 ILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            +L   C     +D  KL    S++G   D   Y +L+
Sbjct: 462 TILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLI 499



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 172/402 (42%), Gaps = 29/402 (7%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +E +G     +  + ++  YV  G +D+A    R + +  F         LI+   +   
Sbjct: 378 MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGR 437

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
            +       E+   G   +    N ++H LC E K+ DA  +     KRG     VS+ T
Sbjct: 438 LSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGT 497

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI G+ K     E  +L   M+   + P + TY+ +I GLC   + D +   L+E+ E G
Sbjct: 498 LIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESG 557

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P++  + T+I G+C+ G+++      +A +  ++M      PD  T  ILL G C EG
Sbjct: 558 LVPDETTYNTIILGYCREGQVE------KAFQFHNKMVKKSFKPDLFTCNILLRGLCTEG 611

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            L+ AL +    I +G  +D V +  +ISG C+  +  EA  +L EM +  L PD  TY 
Sbjct: 612 MLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYN 671

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHL-----------------------PAVETYNAL 386
            ++      G  K     +  +   G L                       P   T++  
Sbjct: 672 AILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQ 731

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +N LC  G+ K+A  ++      G+     TY  L+EG  K 
Sbjct: 732 INELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIKR 773


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 213/440 (48%), Gaps = 16/440 (3%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSK-----KGMGSSASLFASILETRGTHLPGLV 61
           L ++S ++H L     ++ AR L+  ++ +     +    S  LF ++ + +       V
Sbjct: 109 LQSFSAVIHVLTGAHKYTLARCLIKSLIERLRRYSEPTNISHRLFNALEDIQSPKFSIGV 168

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEI 120
              L++ ++++G  +DA+   R +R      P ++ C  +++ ++R          Y  +
Sbjct: 169 FSLLIMEFLEMGLFEDALWVSREMRCS----PDSKACLAILNGLVRRRRFDSVWVDYQLM 224

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +  G  P V++++VL     K+G     + + DE    G+      +   I   C+   +
Sbjct: 225 ISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKM 284

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +E  ++  +M+  G+ P++YTYSA+I+G CK   L  A  L  E+    L PN V+F TL
Sbjct: 285 EEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTL 344

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           +DG CK      A ++  AR +   M   G++P+   Y  L+ G CK G++  A+ +  E
Sbjct: 345 VDGFCK------ARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSE 398

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M    +  D   +T LI+G C   ++ EA R+ + M    + P   TY  +I  FCK  +
Sbjct: 399 MESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYN 458

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +    L  EM S G  P + T++ L++G CK   +K A  L   M   G+VPD +TY  
Sbjct: 459 IEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTT 518

Query: 421 LLEGHCKHGNPEDFDKLQSE 440
           L++ H K  N ++  +L S+
Sbjct: 519 LIDAHFKEANMKEALRLYSD 538



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 186/398 (46%), Gaps = 49/398 (12%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +++A + F L++ H           +ID   +T       G Y EIL     P+V VF  
Sbjct: 284 MEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGT 343

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   CK  ++  A+ +F    K G+      +N LI+G CK+ N+ E   L S ME   
Sbjct: 344 LVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLN 403

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PDV+TY+ LINGLC E RL +A  L   M    + P+ V + +LI G CK   I+ A 
Sbjct: 404 LSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKAL 463

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+        EM ++G+ P+ IT++ L+DG+CK  ++++A+ +  EM  +GI  D V +T
Sbjct: 464 DL------CSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYT 517

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATY-------------------------- 348
            LI    +   + EA R+  +ML+ G+ P+D T+                          
Sbjct: 518 TLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQA 577

Query: 349 -----------------TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
                            T +I+  C+NG      R   +M+S G  P + +Y +++    
Sbjct: 578 ATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHL 637

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +  ++ +  ML   M+  G++P+ +   +L   + ++G
Sbjct: 638 REKRITDTMMLHCDMIKTGILPNLMVNQLLAMFYQENG 675



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 179/370 (48%), Gaps = 14/370 (3%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           + LI+R+ R + PT         L+   SP  S+ VF++L+ +  + G  +DA  V  E 
Sbjct: 133 KSLIERLRRYSEPTNISHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEDALWVSREM 192

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
                    ++   ++NG  + +  D  +    +M   G+ PDV+ YS L     K+   
Sbjct: 193 RCSPDSKACLA---ILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFP 249

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
              E LL EM   G+ PN  I+T  I   C+  +      M+EA K+ + M  +G+ P+ 
Sbjct: 250 SKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENK------MEEAEKMFELMKIHGVVPNL 303

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY+ ++DG+CK G+L  A  + KE++   +  + V F  L+ GFC+  ++V A  +   
Sbjct: 304 YTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVH 363

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M+K G+ P+   Y  +I   CK+G+      LL EM S    P V TY  L+NGLC   +
Sbjct: 364 MVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEER 423

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
           L  AN L   M +  + P  +TYN L+ G CK  N E    L SE    G+  +   +++
Sbjct: 424 LAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFST 483

Query: 453 LVSKSSKYRQ 462
           L+    K R 
Sbjct: 484 LIDGYCKVRN 493



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 19/340 (5%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLI    ++      +G   E+     SP V+ + +L++ LC E ++ +A  +F      
Sbjct: 378 CLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNE 437

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +  ++V++N+LI+G CK  N+++   L S M  SG+ P++ T+S LI+G CK   +  A
Sbjct: 438 RIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAA 497

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  EM  +G+ P+ V +TTLID H K        +MKEA ++  +M   G++P+  T+
Sbjct: 498 MGLYFEMTIKGIVPDVVTYTTLIDAHFKEA------NMKEALRLYSDMLEAGIHPNDHTF 551

Query: 279 TILLDGFCKEGDLESALDIR---------KEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
             L+DGF KEG L  A+D           K +++R      V FT LI G C+ G ++ A
Sbjct: 552 ACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSC-WKYVGFTCLIEGLCQNGYILRA 610

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            R   +M   G+ PD  +Y  ++    +         L  +M   G LP +     L   
Sbjct: 611 SRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPNLMVNQLLAMF 670

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG--HCK 427
             ++G L++A  L ++   LG +  +   +I L    HCK
Sbjct: 671 YQENGYLRSACFLTNSS-RLGTIFKNTCNSIFLITVFHCK 709


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 132/524 (25%), Positives = 231/524 (44%), Gaps = 71/524 (13%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           ++ +   ++H LV  K +  A  ++  +++  G+     L A I           V DAL
Sbjct: 40  SIESCCVVIHVLVNSKRYDDALFIMGNLMNVNGISPLEVLDALISSYDICKSSPAVFDAL 99

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +     +G  + A +    L+   F +        +  +++ N        Y E++ YGY
Sbjct: 100 VRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEMVSYGY 159

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
             +V  FN++++ L KEG++ +A  V     K G+    V+FN +I+G  K   +D   +
Sbjct: 160 IENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAMDLALK 219

Query: 186 L---KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           L     VM G  ++PD  TY++ +NG CK   L  AE    EM  + + PN   + TL+D
Sbjct: 220 LVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVD 279

Query: 243 GHCKNGRID-----------------------------MAGDMKEARKIVDEMCTNGLNP 273
           G+ + G ++                             M GDM+ A  ++ +M    + P
Sbjct: 280 GYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYP 339

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D+ TY+I+++G C+ G L  A    + +++  +  D  +   +I+  CR   +  A+++L
Sbjct: 340 DQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLL 399

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M   GL PD  T+  +ID  CK+G  +   ++ ++M   G  P +  YN+++NG  K 
Sbjct: 400 ANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKE 459

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE------------- 440
           G    A +L+DT+  +G+  D +TYN L+ G+C  G  +    L SE             
Sbjct: 460 GSFDPAILLIDTLRRMGLF-DVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTY 518

Query: 441 -------------------------KGLVSDYACYTSLVSKSSK 459
                                    +GL+ DY  YT L++  SK
Sbjct: 519 NTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSK 562



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 138/269 (51%), Gaps = 7/269 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++D    P  + +++++  LC+ G + +A        +  L   A S N +IN  C++ 
Sbjct: 331 DMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSN 390

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL    +L + M   G+ PDV T+  LI+  CK+ ++++A  +  +M + G  PN +I+ 
Sbjct: 391 NLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYN 450

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++I+G  K G  D       A  ++D +   GL  D +TY  L+ G+C  G ++ A  + 
Sbjct: 451 SVINGFAKEGSFD------PAILLIDTLRRMGLF-DVVTYNTLIHGYCNCGKIDQAFALF 503

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM   GI   +V +  LI+  C+ G V++A+ +++ M+  GL PD  TYT++I  F K 
Sbjct: 504 SEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKK 563

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALM 387
              +    L   M   G +P  +TY  ++
Sbjct: 564 CSPEEVIELHDYMVLKGVVPDRQTYQTMV 592



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 8/254 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R         F   IL+       +  NV+++ LC+   +  A+ +      RG
Sbjct: 347 VIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRG 406

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V+F TLI+ HCK   ++   ++   M  +G +P++  Y+++ING  KE   D A 
Sbjct: 407 LVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAI 466

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           LL+  +   GL  + V + TLI G+C  G+ID      +A  +  EM  +G+    +TY 
Sbjct: 467 LLIDTLRRMGLF-DVVTYNTLIHGYCNCGKID------QAFALFSEMRNSGILASHVTYN 519

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++  CK G +  A ++ K M+ RG+  D V +T LI+ F +     E   +   M+  
Sbjct: 520 TLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKKCSPEEVIELHDYMVLK 579

Query: 340 GLKPDDATY-TMVI 352
           G+ PD  TY TMVI
Sbjct: 580 GVVPDRQTYQTMVI 593



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 7/193 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LIDR  +       +  Y +++  G  P++ ++N +++   KEG    A ++ D   + G
Sbjct: 417 LIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMG 476

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V++NTLI+G+C    +D+ F L S M  SG+     TY+ LIN LCK   +  A+
Sbjct: 477 LF-DVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAK 535

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+  M  RGL P+ V +T LI    K    +      E  ++ D M   G+ PD+ TY 
Sbjct: 536 ELMKMMVLRGLIPDYVTYTILITSFSKKCSPE------EVIELHDYMVLKGVVPDRQTYQ 589

Query: 280 ILLDGFCKEGDLE 292
            ++    +E  +E
Sbjct: 590 TMVIPLLQEESVE 602


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 169/323 (52%), Gaps = 7/323 (2%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R  +P+ +L  Y   L       V  ++  ++ LCK+G+I +A  +F E  ++G    + 
Sbjct: 69  RRGIPS-SLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSF 127

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N LING CK   L+ G  L   M+  G  P V TY+ LI+G C   R+D A  +L EM
Sbjct: 128 TYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEM 187

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAG-DMKEARKIVDEMCTNGLNPDKITYTILLDG 284
             RG+TPN V +T LI G C  G ++ A   +KE +   +E C     P+ +TYT L+ G
Sbjct: 188 EHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECC-----PNVVTYTQLIHG 242

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            C++G  E  ++   EMI  G   +N  +TALI G C+ G  +EA  +L EM+ +G + D
Sbjct: 243 LCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELD 302

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
              Y  +ID  CK G+      +   M   G  P V TY +L+ GLC  G L  A  L+ 
Sbjct: 303 VVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQ 362

Query: 405 TMLDLGVVPDDITYNILLEGHCK 427
            M   G+VP+ +TY  L+ G  +
Sbjct: 363 EMRAKGIVPNSVTYTTLINGFTQ 385



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 163/297 (54%), Gaps = 11/297 (3%)

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            +S++  ING CK   + E   +   ME  G  PD +TY+ LINGLCK+ +L+    L+ 
Sbjct: 91  VISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMD 150

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           EM  RG +P  V +TTLI G C  GR+D A D      I+DEM   G+ P+ +TYT L+ 
Sbjct: 151 EMQARGFSPTVVTYTTLIHGFCTAGRVDAAMD------ILDEMEHRGITPNTVTYTALIQ 204

Query: 284 GFCKEGDLESALDIRKEMIKRGIEL--DNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           G C  G++E A+ + KEM  RG E   + V +T LI G C+ G        L EM+  G 
Sbjct: 205 GLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGC 264

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P++ATYT +I   C+ G       LL EM + G    V  YN+L++GLCK G+L  A  
Sbjct: 265 FPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFARE 324

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           +   M++ GV PD  TY  L++G C  G  ++   L  E   KG+V +   YT+L++
Sbjct: 325 MQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLIN 381



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 8/310 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+ + G +P  + +N+L++ LCK+ +++    + DE   RG   T V++ TLI+G C
Sbjct: 113 IFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFC 172

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPN 233
            A  +D    +   ME  G+ P+  TY+ALI GLC    ++ A L+L EM  RG    PN
Sbjct: 173 TAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPN 232

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V +T LI G C+ G  +M        + +DEM  +G  P+  TYT L+ G C++G    
Sbjct: 233 VVTYTQLIHGLCQKGLFEMG------MEFLDEMIISGCFPNNATYTALIHGLCQKGSFLE 286

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  EM+  G ELD V + +LI G C+ G++  A  M   M++ G+ PD  TYT +I 
Sbjct: 287 AAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQ 346

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C  G       L++EMR+ G +P   TY  L+NG  +  +  +A  L++ M   G++P
Sbjct: 347 GLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMP 406

Query: 414 DDITYNILLE 423
               Y IL +
Sbjct: 407 AGDIYKILFK 416



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 133/289 (46%), Gaps = 39/289 (13%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F  T+  Y+T++H          A D+L                   +E RG     +  
Sbjct: 157 FSPTVVTYTTLIHGFCTAGRVDAAMDILDE-----------------MEHRGITPNTVTY 199

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC---------LIDRMMRTNLPTVT 113
            AL+    D G ++ AI   + ++        RG  C         LI  + +  L  + 
Sbjct: 200 TALIQGLCDCGEVERAILVLKEMK-------LRGNECCPNVVTYTQLIHGLCQKGLFEMG 252

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           + F  E++  G  P+   +  L+H LC++G   +A ++ +E    G     V +N+LI+G
Sbjct: 253 MEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDG 312

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK   LD    ++ +M   G+ PDV+TY++LI GLC    LD+A  L+ EM  +G+ PN
Sbjct: 313 LCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPN 372

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            V +TTLI+G  +  R D       A ++V+EM +NGL P    Y IL 
Sbjct: 373 SVTYTTLINGFTQADRTD------HALQLVNEMKSNGLMPAGDIYKILF 415



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 5/169 (2%)

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           + S+L I +  +    + D ++++  I+G C+ G++ EA  + REM + G  PD  TY +
Sbjct: 72  IPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNI 131

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+  CK+   + G  L+ EM++ G  P V TY  L++G C  G++  A  +LD M   G
Sbjct: 132 LINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRG 191

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYAC-----YTSLV 454
           + P+ +TY  L++G C  G  E    +  E  L  +  C     YT L+
Sbjct: 192 ITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLI 240


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 215/451 (47%), Gaps = 57/451 (12%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            L+ VY+ +G  D A++ F  +R             ++D +++ N   + L  Y  ++  
Sbjct: 131 VLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKL 190

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
              P+V  F++L+  LCK G +KDA  +FDE  +RG+   A ++  +I+G C++K +D+ 
Sbjct: 191 NCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDA 250

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           +RL   M+ SG+ PD  T +AL+NG C  +R+D+A  LL    + G   +   ++ LI G
Sbjct: 251 YRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRG 310

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +  R +      + + +  +M  + + PD   YTI++ G  + G +  AL++  EM +
Sbjct: 311 LFRAKRYE------DVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTE 364

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D V +  LI GFC  G + EA  +  E+ +    P+  TY+++I   C+NG T+ 
Sbjct: 365 SGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRD 424

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM----------------- 406
              +  EM   G  P+  T+N+L++GLCK GQL+ A++L   M                 
Sbjct: 425 AQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPS 484

Query: 407 -------------------------------LDLGVVPDDITYNILLEGHCKHGNPEDFD 435
                                           D G  P   TYNIL+ G CK GN     
Sbjct: 485 HVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAY 544

Query: 436 KLQSE---KGLVSDYACYTSLVSKSSKYRQK 463
           KL  E   KGL  D   Y +L++   +++++
Sbjct: 545 KLFREMQFKGLSPDTVTYGTLINGLLRFQRE 575



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 171/369 (46%), Gaps = 48/369 (13%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL+  +  L  +D+A    RL  K  + +  RG  CLI  + R          Y ++++
Sbjct: 270 NALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIE 329

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
               P VY++ ++M  L + GK++DA  + +E  + G+    V +N LI G C    L E
Sbjct: 330 DNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSE 389

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L+  +      P+V TYS LI+G+C+     DA+ + +EM + G  P+ V F +LID
Sbjct: 390 ARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLID 449

Query: 243 GHCKNGRIDMAG--------------------------DMKEARKIVDEMCTNGL----- 271
           G CK G+++ A                           D    +K+V+++C +GL     
Sbjct: 450 GLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAY 509

Query: 272 -----------NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
                       P   TY IL++GFCK G+   A  + +EM  +G+  D V +  LI+G 
Sbjct: 510 RILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGL 569

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL----LKEMRS--D 374
            R  +  +A ++  +M K G  PD A Y  ++   C+  +    F L    L+ +RS  D
Sbjct: 570 LRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQED 629

Query: 375 GHLPAVETY 383
             + A+E Y
Sbjct: 630 EAIKAIEGY 638



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G+     +F  LI  + K    D+       M      PDVYTY+ +++ L ++N L  A
Sbjct: 121 GIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLA 180

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             +   M +    PN   F+ LIDG CK      +G++K+A  + DEM   G+ PD  TY
Sbjct: 181 LTVYTRMMKLNCLPNVATFSILIDGLCK------SGNVKDALHLFDEMTQRGILPDAFTY 234

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            +++ G C+   ++ A  +  +M   G+  D V   AL++GFC   +V EA  +LR   K
Sbjct: 235 CVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEK 294

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G   D   Y+ +I    +    +    L ++M  D   P V  Y  +M GL + G++++
Sbjct: 295 DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRD 354

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKS 457
           A  LL+ M + GVVPD + YN+L++G C  G   +   LQ E   +S + C+ ++ + S
Sbjct: 355 ALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLE---ISRHDCFPNVKTYS 410



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 55/267 (20%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LEI  +   P+V  +++L+  +C+ G  +DAQ +F+E  K G + +AV+FN+LI+G CK 
Sbjct: 395 LEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKT 454

Query: 178 KNLD------------------------------------------------EGFRLKSV 189
             L+                                                + +R+   
Sbjct: 455 GQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQ 514

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +  SG  P +YTY+ L+NG CK    + A  L  EM  +GL+P+ V + TLI+G  +  R
Sbjct: 515 LADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQR 574

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                  ++A K+ D+M  NG  PD   Y  ++   C+  +L  A  +  + ++     +
Sbjct: 575 ------EEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQE 628

Query: 310 NVAFTALISGFCRGGKVVEAERMLREM 336
           + A  A I G+    +V +A R L EM
Sbjct: 629 DEAIKA-IEGYFEKQEVEKAVRGLLEM 654



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 30/290 (10%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYV 131
           G   DA + F  + K      A     LID + +T  L    L FY   ++ G +PS+++
Sbjct: 420 GLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFY--KMEIGRNPSLFL 477

Query: 132 --------------FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
                            ++ +LC  G I  A  +  +    G      ++N L+NG CK 
Sbjct: 478 RLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKL 537

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            N +  ++L   M+  G+ PD  TY  LINGL +  R +DA  +  +M + G TP+  ++
Sbjct: 538 GNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVY 597

Query: 238 TTLIDGHCKNGRIDMAGD--MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            T++   C+   +  A    +K  R I  +        D+    I  +G+ ++ ++E A+
Sbjct: 598 RTMMTWMCRRMELPRAFSLWLKYLRNIRSQ-------EDEAIKAI--EGYFEKQEVEKAV 648

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER--MLREMLKVGLKP 343
               EM  +  + D   +   + G C+  +V EA +  ++ E  KV + P
Sbjct: 649 RGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYKVVITP 698


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 194/366 (53%), Gaps = 10/366 (2%)

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           +++V    G   DA+Q F  +  HY   P AR    L+      NL   +     +  ++
Sbjct: 148 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 207

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNLDE 182
           G     Y +N LM  L   G++ D   +F+ + +  L++  V SFN +I G C+   + +
Sbjct: 208 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQK 267

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLI 241
              L   M   G  PD  T++ +++GLC+ N +     +L  +   G+  PN V FT++I
Sbjct: 268 ALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 327

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G+CK      AG +++A  + ++M  +G+ P+ +TY +L++G+ K GDL SA+++ ++M
Sbjct: 328 SGYCK------AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 381

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            +     D V F++LI G+CR G++ +A R+  +M +  ++P+  T++++I   CK   +
Sbjct: 382 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRS 441

Query: 362 KTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
               RLL E+     + P    YN +++ LCK G++  AN++   M + G  PD  TY I
Sbjct: 442 DEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTI 501

Query: 421 LLEGHC 426
           L+ G+C
Sbjct: 502 LIIGYC 507



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 164/324 (50%), Gaps = 8/324 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   I D  YSP V+ FNV++  +C+ G+++ A  + +   + G     V+ N +++G C
Sbjct: 236 FERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLC 295

Query: 176 KAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           +   +  G  +   ++  G+  P+V T++++I+G CK  +L+DA  + ++M   G+ PN 
Sbjct: 296 RTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNT 355

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +  LI+G+ K       GD+  A ++  +M      PD +T++ L+DG+C+ G L+ A
Sbjct: 356 VTYNVLINGYGK------VGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 409

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVID 353
           L I  +M +  I+ +   F+ +I   C+  +  EA R+L E+ L+  + P    Y  VID
Sbjct: 410 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVID 469

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G       + K M   G  P   TY  L+ G C   ++  A M    M++ G  P
Sbjct: 470 VLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSP 529

Query: 414 DDITYNILLEGHCKHGNPEDFDKL 437
           D IT N  +    K G P + D +
Sbjct: 530 DSITVNCFISCLLKAGMPNEVDHV 553



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 167/326 (51%), Gaps = 9/326 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL-DEGF 184
           +PS +    ++  LC+ G+  DA  +FD+      ++    F + +   C   NL D   
Sbjct: 139 TPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASA 198

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDG 243
            L S     G R + Y Y+ L++ L    R+ D   L     + R  +P+   F  +I G
Sbjct: 199 TLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKG 258

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+ G++      ++A ++V+ M   G +PD +T+ I++DG C+  ++    ++ + + +
Sbjct: 259 VCRVGQV------QKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQR 312

Query: 304 RGIELDNVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            G+ + NV  FT++ISG+C+ GK+ +A  +  +M+  G+ P+  TY ++I+ + K GD  
Sbjct: 313 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 372

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +   + ++M      P V T+++L++G C+ GQL +A  +   M    + P+  T++I++
Sbjct: 373 SAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIII 432

Query: 423 EGHCKHGNPEDFDKLQSEKGLVSDYA 448
              CK    ++  +L +E  L  D A
Sbjct: 433 HSLCKQNRSDEAIRLLNELNLRPDIA 458



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  Y +++  G  P+   +NVL++   K G +  A  V+ +  +       V+F++LI+
Sbjct: 339 AMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLID 398

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LT 231
           G+C+   LD+  R+ S M    ++P+VYT+S +I+ LCK+NR D+A  LL+E+  R  + 
Sbjct: 399 GYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIA 458

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P   I+  +ID  CK G++D      EA  I   M   G  PDK TYTIL+ G+C +  +
Sbjct: 459 PQAFIYNPVIDVLCKCGKVD------EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRI 512

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             A+    EM++ G   D++     IS   + G   E + ++R
Sbjct: 513 SEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMR 555



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 1/150 (0%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   R       L  + ++  +   P+VY F++++H LCK+ +  +A  + +E   R 
Sbjct: 396 LIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRP 455

Query: 160 -LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +   A  +N +I+  CK   +DE   ++  ME  G RPD YTY+ LI G C ++R+ +A
Sbjct: 456 DIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEA 515

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +  HEM E G +P+ +     I    K G
Sbjct: 516 IMFFHEMVEAGCSPDSITVNCFISCLLKAG 545


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 187/378 (49%), Gaps = 25/378 (6%)

Query: 59  GLVLDALMIVYVDLGF--LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           G + DAL  +    GF    DA+    LL  H  +      R L+ RM R          
Sbjct: 222 GTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRD--------- 272

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
                  G +P+   +N L+    + G IK A  V +     G      ++N L  G C+
Sbjct: 273 -------GIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQ 325

Query: 177 AKNLDEGFRLKSVMEG-SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           A  +DE FRLK  ME  S   PDV TY+ L++   K     DA  LL EM ++G+ P  V
Sbjct: 326 AGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLV 385

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
               ++   CK G+++ A  + +  KI +E    GL PD ITY  L+D +CK G++  A 
Sbjct: 386 THNIVVKSLCKEGKLEEA--LGKLEKIAEE----GLAPDVITYNTLIDAYCKAGNVAKAF 439

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM+ +G+++D      ++   C+  +  +AE +L    + G  PD+ +Y  V+  +
Sbjct: 440 TLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAY 499

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K  + +   RL  +M     +P++ TYN L+ GLC+  +LK A   L+ +++ G+VPD+
Sbjct: 500 FKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDE 559

Query: 416 ITYNILLEGHCKHGNPED 433
            TYNI++  +CK G+ E+
Sbjct: 560 TTYNIIIHAYCKEGDLEN 577



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 176/354 (49%), Gaps = 10/354 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +    +  L    E+ D G  P++   N+++  LCKEGK+++A    ++  + G
Sbjct: 355 LVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG 414

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++NTLI+ +CKA N+ + F L   M G G++ D +T + ++  LCK  R +DAE
Sbjct: 415 LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAE 474

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LLH   +RG  P++V + T++  + K        + + A ++ D+M    L P   TY 
Sbjct: 475 ELLHSPPQRGFVPDEVSYGTVMAAYFKEY------NPEPALRLWDQMIERKLIPSISTYN 528

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C+   L+ A+D   E++++G+  D   +  +I  +C+ G +  A R   +M++ 
Sbjct: 529 TLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVEN 588

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
             KPD  T   +++  C +G      +L +     G    V TYN L+  +CK G +  A
Sbjct: 589 SFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTA 648

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
               D M   G+ PD  TYN++L    + G  E+      KL     L   +AC
Sbjct: 649 LHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFAC 702



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 42/290 (14%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   L  + ++++    PS+  +N L+  LC+  ++K+A    +E  ++GL     ++N 
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNI 564

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+ +CK  +L+  FR  + M  +  +PDV T + L+NGLC   +LD A  L     E+G
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
              + + + TLI   CK       GD+  A    D+M   GL PD  TY ++L    + G
Sbjct: 625 KKVDVITYNTLIQSMCK------VGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAG 678

Query: 290 DLESA-----------------------------LDIRKEMIKRGIE-----LDNVAFTA 315
             E A                              D+++   K   E      DN   T 
Sbjct: 679 RSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETY 738

Query: 316 L--ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +  ++G C GG++ EA+ +L EM++ G+  D +TY  +++   K    +T
Sbjct: 739 MERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQT 788



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           +++LD+ + +I+  +  ++  F  L+   C  G + +A   L  M   GL PD  TY  +
Sbjct: 190 QASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  C+ G       LL  M+ DG  P   TYN L++   + G +K A  ++++M   G 
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVS----DYACYTSLVSKSSKYR 461
            PD  TYN+L  G C+ G  ++  +L+ E   +S    D   Y +LV    K+R
Sbjct: 310 EPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWR 363



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 22/240 (9%)

Query: 59  GLVLDA-----LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           GLV D      ++  Y   G L++A +    + ++ F+     C  L++ +         
Sbjct: 554 GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKA 613

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L  +   ++ G    V  +N L+  +CK G +  A   FD+   +GL   A ++N +++ 
Sbjct: 614 LKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSA 673

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE---MCERGL 230
             +A   +E   +   +  SG     +        L K +  D+A++  HE     E   
Sbjct: 674 LSEAGRSEEAHNMLHKLADSGKLSQSFACP-----LLKPSSADEADVKEHEGKPEAESSE 728

Query: 231 TPNDVIFTTL---IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
              D    T    ++G C  G+      +KEA+ ++DEM   G+  D  TY  L++G  K
Sbjct: 729 KAQDNALETYMERLNGLCTGGQ------LKEAKAVLDEMMQKGMPVDSSTYITLMEGLIK 782


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 183/379 (48%), Gaps = 32/379 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + RT      L  + E L  G     Y  ++L++ LCK+GK+  A+ VF+     G
Sbjct: 305 LFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTG 364

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T V +NTLING+C+ ++L   F +   M+   +RPD  TY+ALINGLCK   +  AE
Sbjct: 365 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRI--------DMA------------------ 253
            L+ EM + G+ P+   F TLID +   G++        DM                   
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G + EA  I+D+M    + P+   Y  ++D + + GD E AL + ++M   G+    
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASI 544

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +  L+ G CR  ++ EAE ++  +   GL+PD  +Y  +I   C  GDT     LL+E
Sbjct: 545 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 604

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P + T + L++ L   G++ +   L   ML   V P    Y I+++ + +  N
Sbjct: 605 MNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCEN 664

Query: 431 PEDFDKLQ---SEKGLVSD 446
                 L+   SEKG+  D
Sbjct: 665 DSKVASLKKEMSEKGIAFD 683



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 171/335 (51%), Gaps = 29/335 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + +NV++  L + GK  DA  VFDE    G+    +++NT+I+GH K  +L+ GFRL
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRL 251

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M   G +P+V TY+ L++GLC+  R+D+   L+ EM    + P+   ++ L DG  +
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 247 NGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
            G                                  G + +A+++ + +   GL P  + 
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++G+C+  DL  A  I ++M  R I  D++ + ALI+G C+   V +AE ++ EM 
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           K G+ P   T+  +ID +   G  +  F +L +M+  G    V ++ +++   CK+G++ 
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            A  +LD M+   V P+   YN +++ + + G+ E
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 526



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 179/363 (49%), Gaps = 43/363 (11%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  ++L  G  P+V  +NVL+  LC+ G++ + + + DE     +     +++ L +
Sbjct: 248 GFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFD 307

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  +         L +     G+    YT S L+NGLCK+ ++  A+ +   +   GL P
Sbjct: 308 GLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVP 367

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK----- 287
             VI+ TLI+G+C+        D++ A  I ++M +  + PD ITY  L++G CK     
Sbjct: 368 TTVIYNTLINGYCQ------VRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 421

Query: 288 ------------------------------EGDLESALDIRKEMIKRGIELDNVAFTALI 317
                                          G LE    +  +M ++GI+ D ++F +++
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 481

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
             FC+ GK+ EA  +L +M+   + P+   Y  +ID + ++GDT+    L+++M++ G  
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVS 541

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
            ++ TYN L+ GLC+  Q+  A  L+ T+ + G+ PD ++YN ++   C  G+ +   +L
Sbjct: 542 ASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALEL 601

Query: 438 QSE 440
             E
Sbjct: 602 LQE 604



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 174/363 (47%), Gaps = 36/363 (9%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+   N+L+  L   G+  D +  F      G      ++N ++     A +LD    +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 187 KSVM---EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
              M   EG+   PD ++Y+ +I GL +  +  DA  +  EM + G+ PN + + T+IDG
Sbjct: 180 LRRMGRSEGAP-PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           H K G ++                               G M E R ++DEM ++ + PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD 298

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+IL DG  + G+ ++ L +  E +K+G+ L     + L++G C+ GKV +A+++  
Sbjct: 299 GFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFE 358

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            ++  GL P    Y  +I+ +C+  D +  F + ++M+S    P   TYNAL+NGLCK  
Sbjct: 359 MLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLE 418

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYT 451
            +  A  L+  M   GV P   T+N L++ +   G  E  F  L    +KG+ SD   + 
Sbjct: 419 MVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 478

Query: 452 SLV 454
           S+V
Sbjct: 479 SVV 481



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 141/270 (52%), Gaps = 13/270 (4%)

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEM--CERGLTPNDVIFTTLIDGHCKNGR 249
            +G RPD + ++ ++        LD A  +L  M   E    P+   +  +I G  ++G+
Sbjct: 150 AAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGK 209

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +A K+ DEM   G+ P++ITY  ++DG  K GDLE+   +R +M+  G + +
Sbjct: 210 ------GSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPN 263

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  L+SG CR G++ E   ++ EM    + PD  TY+++ D   + G+++T   L  
Sbjct: 264 VVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFA 323

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK-- 427
           E    G +    T + L+NGLCK G++  A  + + ++  G+VP  + YN L+ G+C+  
Sbjct: 324 ESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVR 383

Query: 428 --HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
              G    F++++S + +  D+  Y +L++
Sbjct: 384 DLRGAFCIFEQMKS-RHIRPDHITYNALIN 412



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 151/318 (47%), Gaps = 10/318 (3%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           ++ + L+  Y  +  L  A   F  ++  + R        LI+ + +  + T      +E
Sbjct: 370 VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 429

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +   G  PSV  FN L+      G+++    V  +  ++G+ +  +SF +++   CK   
Sbjct: 430 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 489

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + E   +   M    + P+   Y+++I+   +    + A LL+ +M   G++ + V +  
Sbjct: 490 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNL 549

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+ G C++ +ID      EA +++  +   GL PD ++Y  ++   C +GD + AL++ +
Sbjct: 550 LLKGLCRSSQID------EAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQ 603

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF--CK 357
           EM K GI         L+S     G+V + E + ++ML   ++P  + Y +++D +  C+
Sbjct: 604 EMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCE 663

Query: 358 NGDTKTGFRLLKEMRSDG 375
           N D+K    L KEM   G
Sbjct: 664 N-DSKVA-SLKKEMSEKG 679


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 229/490 (46%), Gaps = 36/490 (7%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLH--LIVSKKGMGSSASLFASILETRGTHLP 58
           P FR  + +Y  +VH L   +M+ + R  L+  +++ K    +SA     +   R     
Sbjct: 126 PKFRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSFS 185

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFY 117
             V D ++ V+ + G    A+  F  + K   R+P+ R C  L+  +++       L  Y
Sbjct: 186 PTVFDMILKVFAEKGMTKFALCVFDNMGK-CGRVPSLRSCNSLLSNLVQNGEAFKALLVY 244

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            +++  G  P ++ + ++++  CKEG++ +A     E  +       V++N+LI+G+   
Sbjct: 245 EQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSL 304

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            ++    ++ ++M   G+  +  TY+ LI G CK  +++ AE L+  M E+ L  ++ ++
Sbjct: 305 GDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVY 364

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
             LI  +C  GR+D A                             G + +A +++  M  
Sbjct: 365 GVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKD 424

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             L PD   Y  LLDGFCK+ D   A  +  EM  +G+    V +  L+      G V  
Sbjct: 425 WNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEH 484

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +   M K G+ P++ TY  ++D F K G       + K+  S G   ++  YN ++ 
Sbjct: 485 ALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMIC 544

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ--SEK-GLVS 445
           G CK  +L  A  +   M +LG  PD+ITY  L++G+CK GN  +  KL+  SE+ G+ S
Sbjct: 545 GFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISS 604

Query: 446 DYACYTSLVS 455
               Y SL++
Sbjct: 605 STEMYNSLIT 614



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +V+ VL+H  C  G++ DA  + D   K GL    V  N+LING+CK  ++++   +   
Sbjct: 362 HVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVS 421

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+   ++PD Y Y+ L++G CK+     A  L  EM  +G+    V + TL+    KN  
Sbjct: 422 MKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLL----KN-- 475

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +   G ++ A  I + M   G+ P+++TY  LLD F K G  + A+ I K+ + +G    
Sbjct: 476 LFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKS 535

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              +  +I GFC+  K+V+A+ +  +M ++G  PD+ TY  +ID +CK G+     +L  
Sbjct: 536 ITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKD 595

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
               DG   + E YN+L+ G+ +  +L+  N LL  M +  + P+ +TY  L+ G C  G
Sbjct: 596 MSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKG 655



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 200/444 (45%), Gaps = 46/444 (10%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC-LIDRMMRTN 108
           +  +G +   +  + L+     +G ++ A+  + L+ K     P     C L+D   +  
Sbjct: 457 MHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVA-PNEVTYCTLLDAFFKVG 515

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
                +  + + L  G++ S+ ++N ++   CK  K+  AQ +F +  + G     +++ 
Sbjct: 516 TFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYR 575

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           TLI+G+CK  NL E  +LK + E  G+      Y++LI G+ +   L     LL EM  R
Sbjct: 576 TLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNR 635

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
            L+PN V + +LI G C  G +D      +A     +M   G+ P+ I  + ++    + 
Sbjct: 636 ELSPNVVTYGSLIAGWCDKGMMD------KAYNAYFKMIDKGIAPNIIIGSKIVSSLYRH 689

Query: 289 GDLESALDIRKEMI--------KRGIEL---------------------------DNVAF 313
           G ++ A  I  ++            +EL                           +N+ +
Sbjct: 690 GKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVY 749

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
              I+G C+   + +  R+L ++L  G  PD+ TY  +I      G     F L  +M +
Sbjct: 750 NIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMIN 809

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P +  YNAL+NGLCK G L  A  L + +   G+ P  +TYN L++G+CK G   +
Sbjct: 810 AGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTE 869

Query: 434 FDKLQS---EKGLVSDYACYTSLV 454
             +L+    E+G+      Y++L+
Sbjct: 870 ALELKDKMREEGICPSSITYSTLI 893



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 203/469 (43%), Gaps = 69/469 (14%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           G  +  ++ ++L+  Y  LG ++ A +    ++    +  + G   L+D   +       
Sbjct: 391 GLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKA 450

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
                E+ + G + +V  +N L+  L   G ++ A  +++   KRG+    V++ TL++ 
Sbjct: 451 FKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDA 510

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
             K    D    +       G    +  Y+ +I G CK  +L  A+ +  +M E G  P+
Sbjct: 511 FFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPD 570

Query: 234 DVIFTTLIDGHCKNGRI-------DM----------------------AGDMKEARKIVD 264
           ++ + TLIDG+CK G +       DM                      + ++++   ++ 
Sbjct: 571 EITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLA 630

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM    L+P+ +TY  L+ G+C +G ++ A +   +MI +GI  + +  + ++S   R G
Sbjct: 631 EMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHG 690

Query: 325 KVVEAERMLR---------------EMLKVGLK--------------------PDDATYT 349
           K+ EA  +L                E+ K  L+                     ++  Y 
Sbjct: 691 KIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYN 750

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           + I   CK+ +     R+L ++   G  P   TY +L++     G++  A  L D M++ 
Sbjct: 751 IAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINA 810

Query: 410 GVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           G+VP+ + YN L+ G CK GN +     F+KL + KGL      Y +L+
Sbjct: 811 GLVPNIVVYNALINGLCKSGNLDRARRLFNKL-ARKGLSPTVVTYNTLI 858



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 68/111 (61%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G  P++ V+N L++ LCK G +  A+ +F++  ++GL  T V++NTLI+G+CK  
Sbjct: 806 DMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGG 865

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
              E   LK  M   G+ P   TYS LI+GL  E + + +  LL+EM + G
Sbjct: 866 RTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAG 916


>gi|270342070|gb|ACZ74655.1| hypothetical protein [Phaseolus vulgaris]
 gi|270342076|gb|ACZ74661.1| hypothetical protein [Phaseolus vulgaris]
          Length = 485

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 203/406 (50%), Gaps = 9/406 (2%)

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           T   +   ++ D L+  YV +G ++ A++ FR   +         C CL+  + R N  T
Sbjct: 32  TEDCNWNPVIFDMLVKAYVKVGMVEKALETFRRNIETRLIPNVIACNCLLSGLSRFNYIT 91

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                Y E+   G   + Y FN++ H L K+G         ++  + G     V++NTL+
Sbjct: 92  QCWEVYAEMGRLGVQRNAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLV 151

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           N +CK + L++ F L  +M   G+ P++ TY+ L+NGLC+E ++ +A  L H+M  RG+ 
Sbjct: 152 NSYCKKRRLEDAFYLYKIMYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGIA 211

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V + TL+ G+C++G + M       R I+ EM  N + PD IT  +++DG+ ++G L
Sbjct: 212 PDIVSYNTLVCGYCRHGEMQM------CRSILYEMIGNRICPDSITCRVIVDGYARDGKL 265

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
            SAL+  +E+ +  +++    +  L+   C+ GK   A   L  + + G  P   TY  +
Sbjct: 266 LSALNTVEELKRFRMKIPEEVYDYLVVALCKEGKPFAARSFLHRISEDGYTPKMNTYNKL 325

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  C+  + +    L  +M +         Y A++  LC+  +   A +LL+ ++   +
Sbjct: 326 VESLCEFNNEEEALILKSDMENKSMKVNAAAYRAVIICLCRVKRTVEAEVLLEEIIGSDM 385

Query: 412 VPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           +PD      L++G+C+    +      KL +++  V D   Y ++V
Sbjct: 386 LPDVEISRALIKGYCEENKVDKAVSLLKLFAKEFQVYDTESYNAVV 431



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 3/191 (1%)

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
           CT   N + + + +L+  + K G +E AL+  +  I+  +  + +A   L+SG  R   +
Sbjct: 31  CTEDCNWNPVIFDMLVKAYVKVGMVEKALETFRRNIETRLIPNVIACNCLLSGLSRFNYI 90

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            +   +  EM ++G++ +  T+ ++     K+GDT      L++M  +G  P + TYN L
Sbjct: 91  TQCWEVYAEMGRLGVQRNAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTL 150

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGL 443
           +N  CK  +L++A  L   M   GV+P+ ITY  L+ G C+ G  ++  +L  +   +G+
Sbjct: 151 VNSYCKKRRLEDAFYLYKIMYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGI 210

Query: 444 VSDYACYTSLV 454
             D   Y +LV
Sbjct: 211 APDIVSYNTLV 221



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C   R+ RT    V L    EI+     P V +   L+   C+E K+  A  +   F 
Sbjct: 363 CLC---RVKRTVEAEVLLE---EIIGSDMLPDVEISRALIKGYCEENKVDKAVSLLKLFA 416

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K        S+N ++   C   N+ E   ++  +   G  P+  T   +I+GL K   LD
Sbjct: 417 KEFQVYDTESYNAVVKVFCDVGNVTELMEVEDKLLKVGYVPNKLTCRHVIHGLQKAMELD 476

Query: 217 DAELLLHEM 225
           D E+L H +
Sbjct: 477 D-EILNHSL 484


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 173/343 (50%), Gaps = 10/343 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + +       +    +I   G +P++  +N L++ LCK G++++A  +  +    G
Sbjct: 40  IVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 99

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++ +LI+G  K K   E ++L   M   G+  D   Y+ALI GL +  ++  A 
Sbjct: 100 CTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQAS 159

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  P+ V  +T+IDG CK GRI        A +I   M   GL P+++ Y+
Sbjct: 160 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIG------AAVRIFKSMEARGLAPNEVVYS 213

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G CK   ++ AL++  +M K     D + +  LI G C+ G V  A     EML+ 
Sbjct: 214 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEA 273

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G KPD  TY ++I  FCK G+T     +  +M S    P V TY  L++GLCK  QL  A
Sbjct: 274 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKA 333

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQ 438
           ++    M + G  PD   Y+ L++G CK G  E     FD+++
Sbjct: 334 SLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEME 376



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 169/336 (50%), Gaps = 11/336 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            F++L++ L K G +  A  +  E    G      ++ T+++   K K + E   L   +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
             +G  P + TY+AL+NGLCK  RL++A  LL ++ + G TP+ V +T+LIDG  K  R 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKR- 119

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
                  EA K+  EM + GL  D + YT L+ G  + G +  A  + K M  +G   D 
Sbjct: 120 -----SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDV 174

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V  + +I G C+ G++  A R+ + M   GL P++  Y+ +I   CK         +L +
Sbjct: 175 VTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 234

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M+     P   TYN L++GLCK G +  A    D ML+ G  PD  TYNIL+ G CK GN
Sbjct: 235 MKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 294

Query: 431 PED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            +     FD + S +    +   Y +L+S   K RQ
Sbjct: 295 TDAACGVFDDMSSSR-CSPNVVTYGTLISGLCKRRQ 329



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 176/358 (49%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ +++  +         E    G +  ++ +  ++  L K  KI++A  + ++    G
Sbjct: 5   LINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANG 64

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              T  ++N L+NG CK   L+E   L   +  +G  PDV TY++LI+GL K+ R  +A 
Sbjct: 65  CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAY 124

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  RGL  + V +T LI G      +  AG + +A  +   M + G  PD +T +
Sbjct: 125 KLFKEMASRGLALDTVCYTALIRG------LLQAGKIPQASSVYKTMTSQGCVPDVVTLS 178

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++DG CK G + +A+ I K M  RG+  + V ++ALI G C+  K+  A  ML +M K 
Sbjct: 179 TMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 238

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              PD  TY ++ID  CK+GD         EM   G  P V TYN L++G CK G    A
Sbjct: 239 FCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 298

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKH---GNPEDFDKLQSEKGLVSDYACYTSLV 454
             + D M      P+ +TY  L+ G CK         + +   E+G   D   Y+SLV
Sbjct: 299 CGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLV 356



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 168/341 (49%), Gaps = 13/341 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+D G +P V  +  L+  L K+ +  +A  +F E   RGL    V +  LI G  +A 
Sbjct: 94  KIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAG 153

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + +   +   M   G  PDV T S +I+GLCK  R+  A  +   M  RGL PN+V+++
Sbjct: 154 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 213

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G CK  ++D A +M    K     CT    PD ITY IL+DG CK GD+ +A    
Sbjct: 214 ALIHGLCKARKMDCALEMLAQMK--KAFCT----PDTITYNILIDGLCKSGDVAAARAFF 267

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM++ G + D   +  LISGFC+ G    A  +  +M      P+  TY  +I   CK 
Sbjct: 268 DEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKR 327

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                     + M+  G  P    Y++L++GLCK G+L+   ML D M   GV  +  T 
Sbjct: 328 RQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVA-NSQTR 386

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             L+   CK    ++    F+ ++ E G+   YA Y S++S
Sbjct: 387 TRLIFHLCKANRVDEAVSLFNAIRKE-GMPHPYA-YNSIIS 425



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 8/211 (3%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P    +N+L+  LCK G +  A+  FDE  + G      ++N LI+G CKA N D    
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACG 300

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M  S   P+V TY  LI+GLCK  +L  A L    M ERG  P+  ++++L+DG C
Sbjct: 301 VFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLC 360

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G+++  G M     + DEM  +G+   + T T L+   CK   ++ A+ +   + K G
Sbjct: 361 KSGKLE-GGCM-----LFDEMERSGVANSQ-TRTRLIFHLCKANRVDEAVSLFNAIRKEG 413

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREM 336
           +     A+ ++IS   + GKV E + + +EM
Sbjct: 414 MP-HPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 171/318 (53%), Gaps = 6/318 (1%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
           +++   +  IL  GY P       L+  LC +G I  A    D+    G     VS+ TL
Sbjct: 121 SLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTL 180

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ING CK         +   ++G  +R DV  Y+ +I+G+CK+  ++DA     EM  + +
Sbjct: 181 INGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRI 240

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P  V + TLI G C      + G +K+A  ++ +M    +NP   T++IL+D FCKEG 
Sbjct: 241 CPTVVTYNTLICGLC------IMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGK 294

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           ++ A ++   M+K+ ++ + V + +L++G+C   +V +AE +   M ++G+ PD  +Y++
Sbjct: 295 VKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSI 354

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I  FCK        +L +EM      P V TYN+L++GLCK G++  A  L+  M D G
Sbjct: 355 MISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRG 414

Query: 411 VVPDDITYNILLEGHCKH 428
             P+ ITYN LL+  CK+
Sbjct: 415 QPPNIITYNSLLDALCKN 432



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 174/335 (51%), Gaps = 7/335 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F+ ++L  G+  +   +  L++ LCK G+ K A  +      + +    V +NT+I+
Sbjct: 158 ALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIID 217

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK K +++ F   S M    + P V TY+ LI GLC   +L DA  LLH+M    + P
Sbjct: 218 GVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINP 277

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
               F+ L+D  CK G++      KEA+ +   M    + P+ +TY  L++G+C   ++ 
Sbjct: 278 TVYTFSILVDAFCKEGKV------KEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVN 331

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  I   M + G+  D  +++ +ISGFC+   V EA ++  EM    + PD  TY  +I
Sbjct: 332 KAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLI 391

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D  CK+G      +L+ EM   G  P + TYN+L++ LCK+  +  A  LL  + D  + 
Sbjct: 392 DGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQ 451

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDY 447
           P   TYNIL+ G CK G  +D  K+  E  LV+ Y
Sbjct: 452 PSVCTYNILINGLCKSGRLKDAQKV-FEDVLVNGY 485



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 166/301 (55%), Gaps = 6/301 (1%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V ++N ++  +CK+  + DA   + E   + +  T V++NTLI G C    L +   L  
Sbjct: 209 VVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLH 268

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + P VYT+S L++  CKE ++ +A+ +   M ++ + PN V + +L++G+C   
Sbjct: 269 KMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYC--- 325

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
              +  ++ +A  I + M   G+ PD  +Y+I++ GFCK   ++ A+ + +EM  + I  
Sbjct: 326 ---LVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFP 382

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V + +LI G C+ G++  A +++ EM   G  P+  TY  ++D  CKN        LL
Sbjct: 383 DVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELL 442

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +++     P+V TYN L+NGLCK G+LK+A  + + +L  G   D  TYN +++G CK 
Sbjct: 443 TKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKK 502

Query: 429 G 429
           G
Sbjct: 503 G 503



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 157/332 (47%), Gaps = 9/332 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +PS+  F  ++  L K         +  +    G+ +  V+ + LIN   +  +    F 
Sbjct: 66  TPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFS 125

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + S +   G  PD  T + LI GLC +  +  A     ++   G   N V + TLI+G C
Sbjct: 126 VFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLC 185

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G+   A +M   R+I  ++    +  D + Y  ++DG CK+  +  A D   EM+ + 
Sbjct: 186 KVGQTKAALEM--LRRIDGKL----VRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKR 239

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I    V +  LI G C  G++ +A  +L +M+   + P   T+++++D FCK G  K   
Sbjct: 240 ICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAK 299

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +   M      P + TYN+LMNG C   ++  A  + +TM  +GV PD  +Y+I++ G 
Sbjct: 300 NVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGF 359

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           CK    ++  KL  E   K +  D   Y SL+
Sbjct: 360 CKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLI 391



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 29/231 (12%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+VY F++L+   CKEGK+K+A+ VF    K+ +    V++N+L+NG+C    +++   
Sbjct: 276 NPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAES 335

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + + M   G+ PDV++YS +I+G CK   +D+A  L  EM  + + P+ V + +LIDG C
Sbjct: 336 IFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLC 395

Query: 246 KNGRIDMA----GDMKE---------ARKIVDEMCTN----------------GLNPDKI 276
           K+GRI  A    G+M +            ++D +C N                 + P   
Sbjct: 396 KSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVC 455

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           TY IL++G CK G L+ A  + ++++  G  +D   +  +I GFC+ G V+
Sbjct: 456 TYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVI 506



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 122/268 (45%), Gaps = 8/268 (2%)

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           SF+     + +  NL   F    ++      P +  +  ++  L K N       L  +M
Sbjct: 38  SFSNSTTLYSQLHNLVSSFN--HLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQM 95

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G+  N V  + LI+   + G   ++        +   +   G  PD IT T L+ G 
Sbjct: 96  EFNGIASNLVTLSILINCFSQLGHNSLSFS------VFSNILKKGYEPDAITLTTLIKGL 149

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C +GD+  AL    +++  G +L+ V++  LI+G C+ G+   A  MLR +    ++ D 
Sbjct: 150 CLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDV 209

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             Y  +ID  CK+      F    EM +    P V TYN L+ GLC  GQLK+A  LL  
Sbjct: 210 VMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHK 269

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPED 433
           M+   + P   T++IL++  CK G  ++
Sbjct: 270 MILENINPTVYTFSILVDAFCKEGKVKE 297


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 173/332 (52%), Gaps = 30/332 (9%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V+V N ++  LCK+GK  +A  +  +   RG+    VS+N ++ GHC+ KN+D    + 
Sbjct: 442 NVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVF 501

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S +   G++P+ YTYS LI+G  + +   +A  +++ M    +  N V++ T+I+G CK 
Sbjct: 502 SNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKV 561

Query: 248 GRIDMA------------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
           G+   A                              G+M  A    +EMC NG++P+ IT
Sbjct: 562 GQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVIT 621

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           YT L++G CK   ++ AL++R EM  +G++LD  A+ ALI GFC+   +  A  +  E+L
Sbjct: 622 YTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELL 681

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + GL P    Y  +I  F   G+      L K+M  DG    + TY  L++GL K G L 
Sbjct: 682 EEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLI 741

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            A+ L   M  +G+VPD+I Y +++ G  K G
Sbjct: 742 LASELYTEMQAVGLVPDEIIYTVIVNGLSKKG 773



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 176/319 (55%), Gaps = 11/319 (3%)

Query: 118 LEILDYGYSPSV----YVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLIN 172
           LE++++  S ++     V+  +++ LCK G+   A +++ +   ++ L  + +S+N++I+
Sbjct: 533 LEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIID 592

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  K   +D        M G+G+ P+V TY++L+NGLCK NR+D A  +  EM  +G+  
Sbjct: 593 GFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKL 652

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   +  LIDG CK        +M+ A  +  E+   GLNP +  Y  L+ GF   G++ 
Sbjct: 653 DIPAYGALIDGFCKRS------NMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMV 706

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           +ALD+ K+M+K G+  D   +T LI G  + G ++ A  +  EM  VGL PD+  YT+++
Sbjct: 707 AALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIV 766

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +   K G      ++ +EM+ +   P V  YNA++ G  + G L  A  L D MLD G++
Sbjct: 767 NGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGIL 826

Query: 413 PDDITYNILLEGHCKHGNP 431
           PD  T++IL+ G   +  P
Sbjct: 827 PDGATFDILVSGQVGNLQP 845



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 180/343 (52%), Gaps = 10/343 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  IL+ G  P+ Y +++L+    +    ++A  V +      +    V + T+ING CK
Sbjct: 501 FSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCK 560

Query: 177 AKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                +   L  +++E   +     +Y+++I+G  KE  +D A     EMC  G++PN +
Sbjct: 561 VGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVI 620

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T+L++G CKN R+D A +M+      DEM   G+  D   Y  L+DGFCK  ++ESA 
Sbjct: 621 TYTSLMNGLCKNNRMDQALEMR------DEMKNKGVKLDIPAYGALIDGFCKRSNMESAS 674

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  E+++ G+      + +LISGF   G +V A  + ++MLK GL+ D  TYT +ID  
Sbjct: 675 ALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGL 734

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K+G+      L  EM++ G +P    Y  ++NGL K GQ      + + M    V P+ 
Sbjct: 735 LKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNV 794

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           + YN ++ GH + GN ++  +L  E   KG++ D A +  LVS
Sbjct: 795 LIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVS 837



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 180/401 (44%), Gaps = 55/401 (13%)

Query: 100 LIDRMMRTNLPTVTLGFYLEIL-----DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           L+ R + T+ PT      +  L      +G+  +   FN L++   K+ +   A  + ++
Sbjct: 129 LLIRYVSTSNPTPMASVLVSKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQ 188

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             +  +       N  ++   +  +L E   L S M   G+  D  T   L+    +E +
Sbjct: 189 MLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEK 248

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG----DMKEARKIVDEMCTNG 270
             +A  +L    ERG  P+ ++++  +   CK   + MA     +MKE +     +C   
Sbjct: 249 PAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKK-----LCV-- 301

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             P + TYT ++    K+G+++ A+ ++ EM+  GI ++ VA T+LI+G C+   +V A 
Sbjct: 302 --PSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSAL 359

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV---------- 380
            +  +M K G  P+  T++++I+ F KNG+ +      K+M   G  P+V          
Sbjct: 360 VLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGW 419

Query: 381 --------------ETY----------NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
                         E++          N +++ LCK G+   A  LL  M   G+ P+ +
Sbjct: 420 LKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVV 479

Query: 417 TYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           +YN ++ GHC+  N +    + S   EKGL  +   Y+ L+
Sbjct: 480 SYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILI 520



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 31/297 (10%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE------------TRGTHL 57
           Y T+++ L      S+AR+LL  ++ +K +  S   + SI++                 +
Sbjct: 551 YQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEM 610

Query: 58  PGLVLDALMIVYVDL-------GFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRM-MRT 107
            G  +   +I Y  L         +D A++    ++    +  IPA G   LID    R+
Sbjct: 611 CGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGA--LIDGFCKRS 668

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           N+ + +   + E+L+ G +PS  ++N L+      G +  A  ++ +  K GL     ++
Sbjct: 669 NMESAS-ALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTY 727

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            TLI+G  K  NL     L + M+  G+ PD   Y+ ++NGL K+ +      +  EM +
Sbjct: 728 TTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKK 787

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
             +TPN +I+  +I GH + G +D      EA ++ DEM   G+ PD  T+ IL+ G
Sbjct: 788 NNVTPNVLIYNAVIAGHYREGNLD------EAFRLHDEMLDKGILPDGATFDILVSG 838


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 218/444 (49%), Gaps = 28/444 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG---------------------MGSSASL 45
           L +Y+ ++  L   K   QA DLLH++   KG                     +  + SL
Sbjct: 171 LFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSL 230

Query: 46  FASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105
           F ++L+ RG     +   +++        +D A Q F  + K+           L+    
Sbjct: 231 FDAMLD-RGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYC 289

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
            +  P   +G + ++  +G  P V  +  LM  LCK GK  +A+ +FD   KRG    + 
Sbjct: 290 SSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDST 349

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++ TL++G+     L E   L  +M   GM+   + ++ ++    K N++D+A L+   M
Sbjct: 350 TYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNM 409

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
            ++GL P+ V + T++D  C  GR+D      +A    + + + GL P+ + +T L+ G 
Sbjct: 410 RQQGLNPDIVNYGTVLDILCTAGRVD------DALSQFNSLKSEGLAPNIVVFTTLIHGL 463

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C     +   ++  EMI RGI LD + F A++   C+ G+V+EA+ +   M+++G++P+ 
Sbjct: 464 CTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNT 523

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +ID +C +G      +LL  M  +G  P+  TYN ++NG  ++G++++   LL  
Sbjct: 524 NTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLRE 583

Query: 406 MLDLGVVPDDITYNILLEGHCKHG 429
           M   GV P  +TY +LL+G  + G
Sbjct: 584 MDGKGVNPGIVTYEMLLQGLFQAG 607



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 163/344 (47%), Gaps = 41/344 (11%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  +++ L +EG++  A  +FD    RG     V+++++I+   K + +D+  ++ +
Sbjct: 208 VVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFT 267

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +G+ PD   Y++L++G C   +  +A  +  +MC  G+ P+ V +T L+D  CKNG
Sbjct: 268 RMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNG 327

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +        EARKI D +   G  PD  TY  LL G+  EG L    D+   M+K+G++L
Sbjct: 328 K------STEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQL 381

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
            +  F  ++  + +  KV EA  +   M + GL PD   Y  V+D  C  G         
Sbjct: 382 GHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQF 441

Query: 369 KEMRSDGHLPAVETY-----------------------------------NALMNGLCKH 393
             ++S+G  P +  +                                   NA+M  LCK 
Sbjct: 442 NSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKK 501

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           G++  A  L D M+ +G+ P+  TYN L++G+C  G  ++  KL
Sbjct: 502 GRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 545



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 13/318 (4%)

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM-EGSGMRP-DVY 200
           G+     +V     + G      S+  L+ G C  K   +   L  +M +  G  P DV 
Sbjct: 150 GRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVV 209

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
            Y+ +INGL +E +LD A  L   M +RG +P+ V ++++I    K   +D      +A 
Sbjct: 210 AYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD------KAT 263

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++   M  NG+ PD I YT L+ G+C  G  + A+ I K+M + G+E D V +TAL+   
Sbjct: 264 QVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYL 323

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+ GK  EA ++   ++K G KPD  TY  ++  +   G       LL  M   G     
Sbjct: 324 CKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGH 383

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDK 436
             +N +M    KH ++  A ++   M   G+ PD + Y  +L+  C  G  +D    F+ 
Sbjct: 384 HIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNS 443

Query: 437 LQSEKGLVSDYACYTSLV 454
           L+SE GL  +   +T+L+
Sbjct: 444 LKSE-GLAPNIVVFTTLI 460



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 155/329 (47%), Gaps = 23/329 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+ ++ +L  +   ++AR +   +V K+G    ++       T GT L G   +  ++  
Sbjct: 316 YTALMDYLCKNGKSTEARKIFDSLV-KRGHKPDST-------TYGTLLHGYATEGALVEM 367

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
            DL  LD  ++    L  H F +       ++    + N     L  +  +   G +P +
Sbjct: 368 HDL--LDLMMKKGMQLGHHIFNM-------IMGAYAKHNKVDEALLVFSNMRQQGLNPDI 418

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             +  ++  LC  G++ DA   F+     GL    V F TLI+G C     D+   L   
Sbjct: 419 VNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFE 478

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+  D   ++A++  LCK+ R+ +A+ L   M   G+ PN   + TLIDG+C +G+
Sbjct: 479 MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGK 538

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D      EA K++  M  NG+ P  +TY  +++G+ + G +E  L + +EM  +G+   
Sbjct: 539 MD------EAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPG 592

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLK 338
            V +  L+ G  + G+ V A+ +   M+K
Sbjct: 593 IVTYEMLLQGLFQAGRTVAAKELYLRMIK 621



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 159/384 (41%), Gaps = 79/384 (20%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR---PDVYTYS 203
           DA  VFD   KRG  A+    N  ++   +A        L + M  +G     P++ TY 
Sbjct: 45  DAHQVFDRLLKRGDRASIFDLNRALSDVARASPA-VAISLFNRMPRAGATSAAPNIATYG 103

Query: 204 ALINGLCKE-NRLDDA-------------------------------------ELLLHEM 225
            +I G C+   RLD A                                     +++L  M
Sbjct: 104 IVI-GCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPLCTAGGRAMRMDIVLRRM 162

Query: 226 CERGLTPNDVIFTTLIDGHCKN-----------------GRIDM--------------AG 254
            E G  P+   +T L+ G C +                 GR  +               G
Sbjct: 163 PELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREG 222

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            + +A  + D M   G +PD +TY+ ++    K   ++ A  +   M+K G+  D + +T
Sbjct: 223 QLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYT 282

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           +L+ G+C  GK  EA  + ++M + G++PD  TYT ++D  CKNG +    ++   +   
Sbjct: 283 SLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKR 342

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED- 433
           GH P   TY  L++G    G L   + LLD M+  G+      +N+++  + KH   ++ 
Sbjct: 343 GHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEA 402

Query: 434 ---FDKLQSEKGLVSDYACYTSLV 454
              F  ++ ++GL  D   Y +++
Sbjct: 403 LLVFSNMR-QQGLNPDIVNYGTVL 425


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 186/380 (48%), Gaps = 52/380 (13%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I+  GY P V  F  L+  LC E +I +A  +F    K G     V++ TLI G C   N
Sbjct: 152 IMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGN 211

Query: 180 LDEGFRLKSVMEGS------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           ++   +    M           RP+V +YS +I+GLCK    ++A  L +EM ++G+ PN
Sbjct: 212 INIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPN 271

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F+ LID  CK G++       +A+K+++ M   G+ P+  TYT L+ GFC  GDL S
Sbjct: 272 VVTFSVLIDMLCKEGQV------IKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNS 325

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT------ 347
           A ++   M  +G E D +++  LI+G+C+  KV EA ++  EML VG+ PD  T      
Sbjct: 326 AKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLK 385

Query: 348 --------------------YTM---------VIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
                               Y M          +D  CKNG      +L  E+ S     
Sbjct: 386 ALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKL 445

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----F 434
            +ET+  L++GLCK G+L+ A  L + + + G+ PD + Y+ ++ G CK G  +     F
Sbjct: 446 DIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILF 505

Query: 435 DKLQSEKGLVSDYACYTSLV 454
            K++ E G   D   Y+ L+
Sbjct: 506 QKME-ENGCSPDLITYSILM 524



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 174/312 (55%), Gaps = 4/312 (1%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S++ FN L+  L K         ++ +    GL    ++ N LIN  C    ++EG    
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAM 149

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           + +   G  PDV T++ LI GLC E+R+ +A  L   M + G TPN V + TLI G C  
Sbjct: 150 AGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCAL 209

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           G I++A  +K  ++++++      N  P+ I+Y+I++DG CK G+ E A+ +  EM+ +G
Sbjct: 210 GNINIA--LKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQG 267

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           ++ + V F+ LI   C+ G+V++A+++L  M+++G+ P+  TYT +I  FC  GD  +  
Sbjct: 268 VQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAK 327

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L   M S G+ P V +YN L+NG CK  +++ A  L + ML +G+ PD  T  +LL+  
Sbjct: 328 ELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKAL 387

Query: 426 CKHGNPEDFDKL 437
              G  +D  +L
Sbjct: 388 FLAGKVDDAKEL 399



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +       +  + E++D G  P+V  F+VL+  LCKEG++  A+ + +   + G
Sbjct: 243 IIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIG 302

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     ++ +LI G C   +L+    L   M   G  PDV +Y+ LING CK  ++++A 
Sbjct: 303 IVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAM 362

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L +EM   G+ P+      L+      G++D   D KE  +++       +  D     
Sbjct: 363 KLFNEMLHVGMWPDVKTSGVLLKALFLAGKVD---DAKELFRVIKPY---AMPKDLCICC 416

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           I LDG CK G +  A+ +  E+    ++LD   F  LI G C+ GK+  A  +  ++ + 
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE 476

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++PD   Y+ +I  FCK G       L ++M  +G  P + TY+ LM G  +  +L+  
Sbjct: 477 GIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKV 536

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCK 427
             LL  M++  V PDD  Y I+ +  CK
Sbjct: 537 VQLLHRMIEKDVWPDDGIYAIVEDMVCK 564



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 135/286 (47%), Gaps = 29/286 (10%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P+++ +  L+   C  G +  A+ +F     +G     +S+N LING+CK   
Sbjct: 298 MIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           ++E  +L + M   GM PDV T   L+  L    ++DDA+ L   +    +  +  I   
Sbjct: 358 VEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCI 417

Query: 240 LIDGHCKNG-----------------RIDM------------AGDMKEARKIVDEMCTNG 270
            +DG CKNG                 ++D+            AG ++ A ++ +++   G
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEG 477

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           + PD + Y+ ++ GFCK+G ++ A  + ++M + G   D + ++ L+ GF    K+ +  
Sbjct: 478 IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVV 537

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           ++L  M++  + PDD  Y +V D  CK+   K    LL+      H
Sbjct: 538 QLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKH 583



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI--DRMMRTNLPTVTLGF 116
           G++L AL +     G +DDA + FR+++   + +P   C C I  D + +       +  
Sbjct: 381 GVLLKALFLA----GKVDDAKELFRVIKP--YAMPKDLCICCIFLDGLCKNGYIFEAMKL 434

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+  Y     +  F  L+  LCK GK++ A  +F++  + G+   A++++++I+G CK
Sbjct: 435 FNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCK 494

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +D+   L   ME +G  PD+ TYS L+ G  + N+L+    LLH M E+ + P+D I
Sbjct: 495 KGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGI 554

Query: 237 FTTLIDGHCKNGR 249
           +  + D  CK+ +
Sbjct: 555 YAIVEDMVCKDEK 567


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 180/330 (54%), Gaps = 9/330 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           SV  +++L+      G I++A+ +F+E  ++ +      ++++I+   +  N+   F L 
Sbjct: 286 SVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALF 345

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M    + P+ +TY ALI G+CK  +++ AE+LL EM  +G+  N VIF T +DG+C+ 
Sbjct: 346 DEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRR 405

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G++D      EA ++   M   G+N D  TY IL +G CK    + A  I   M+++G++
Sbjct: 406 GKMD------EALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVK 459

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V FT  I  +C+ G + EAER+ R+M K G  P+  TY  +ID +CK    K   ++
Sbjct: 460 PNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKI 519

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM + G LP + TY++L++G C  G++  A  L + M   G+  +  TY  ++ G  K
Sbjct: 520 KSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSK 579

Query: 428 HGNPEDFDKLQSEK---GLVSDYACYTSLV 454
            G  ++  KL  E    GL+ D   +TSLV
Sbjct: 580 EGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 233/493 (47%), Gaps = 46/493 (9%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           L A+  ++  L   +  +  + +L+ +V+   +    S    +++   +H      D L 
Sbjct: 93  LKAHLILISRLFEARKFATMKSILNGLVTDSDIECPVSSIVDLVDEFESHFVEKFCDMLF 152

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-Y 125
            V  D    D+ I+ +  + +    I  R C  L+  + R       + F+  +++   +
Sbjct: 153 RVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESNKF 212

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAKN----- 179
              V    +++  LC+ G+++ A+ + DE  GK  +     ++NTL+N +   K+     
Sbjct: 213 EIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVD 272

Query: 180 ------------------------------LDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
                                         ++E  ++   M    +  DVY YS++I+  
Sbjct: 273 EILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWS 332

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
            +   +  A  L  EM +R + PN   +  LI G CK      AG M+ A  ++ EM + 
Sbjct: 333 RRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCK------AGQMEAAEILLLEMQSK 386

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G++ + + +   +DG+C+ G ++ AL ++  M K+GI  D   +  L +G C+  +  EA
Sbjct: 387 GVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEA 446

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           + +L  M++ G+KP+  T+TM I+ +CK G+     RL ++M   G +P + TYN L++ 
Sbjct: 447 KCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDA 506

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
            CK  ++K A+ +   M++ G++PD  TY+ L+ G C  G  ++  KL +E   KG+  +
Sbjct: 507 YCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRN 566

Query: 447 YACYTSLVSKSSK 459
            A YTS++S  SK
Sbjct: 567 VATYTSMISGLSK 579



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 142/273 (52%), Gaps = 21/273 (7%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH----- 88
           V K G   +A +    ++++G  L  ++ +  M  Y   G +D+A++   ++ K      
Sbjct: 367 VCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINAD 426

Query: 89  --YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
              + I A G    + ++ R +     L     +++ G  P+V  F + +   CKEG + 
Sbjct: 427 VFTYNILANG----LCKLHRYDEAKCILN---SMVEKGVKPNVVTFTMFIEIYCKEGNLA 479

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A+ +F +  K+G     +++NTLI+ +CK + + +  ++KS M   G+ PD+YTYS+LI
Sbjct: 480 EAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLI 539

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G C   R+D+A  L +EM  +G+T N   +T++I G  K GR D      EA K+ DEM
Sbjct: 540 HGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRAD------EAFKLYDEM 593

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
              GL PD   +T L+  F K     + LDI+K
Sbjct: 594 MKIGLIPDDRVFTSLVGSFHKPLT-HAGLDIQK 625


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 191/399 (47%), Gaps = 69/399 (17%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G S  +     +M  L K GK K+A+ VF+   K  L    V+++ L++G+CK   ++  
Sbjct: 421 GISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELA 480

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   ME   + P+V T+S++ING  K+  L  A  +L EM +R + PN +++  LIDG
Sbjct: 481 ELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDG 540

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           + K G  D+A                             G M EAR ++ +M + G++PD
Sbjct: 541 YFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD 600

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  L+DG+ KEG+  +AL I +EM ++ I  D VA+ ALI G  R GK  +   +  
Sbjct: 601 IVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGK-YDPRYVCS 659

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            M+++GL PD  TY  +I+ +C  G T+    +L EM+S G +P   TYN L+ GLCK G
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719

Query: 395 ------------------------------------QLKNANMLLDTMLDLGVVPDDITY 418
                                               +LK   ++LD M+  G+  D +TY
Sbjct: 720 FVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTY 779

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           N L+ G+C   + E   K  S+    G+  +   Y +L+
Sbjct: 780 NALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLL 818



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 175/364 (48%), Gaps = 50/364 (13%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y ++L  G  P V+  NVL+H LCK G +  A           +    V++NT+I G C+
Sbjct: 117 YSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLR--NNDVVDIDNVTYNTVIWGFCQ 174

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +D+GF L S M   G+  D  T + L+ G C+   +  AE +++ + + G+T + + 
Sbjct: 175 KGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIG 234

Query: 237 FTTLIDGHCK-----------------NGRIDMA------------GDMKEARKIVDEMC 267
             TLIDG+C+                 + +ID+             GD+  A  + +E+ 
Sbjct: 235 LNTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEIL 294

Query: 268 -------------------TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                                 L P  +TYT L+  +CK   +E +  + K+MI  GI  
Sbjct: 295 GFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMP 354

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V  ++++ GFCR GK+ EA  + REM ++GL P+  +Y  +I+   K+G     F L 
Sbjct: 355 DVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQ 414

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M   G    + T   +M+GL K G+ K A  + +T+L L + P+ +TY+ LL+G+CK 
Sbjct: 415 SQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKL 474

Query: 429 GNPE 432
           G  E
Sbjct: 475 GKME 478



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 175/363 (48%), Gaps = 25/363 (6%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  L+    R  L          ++D G +  V   N L+   C+   +  A  + +   
Sbjct: 200 CNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIENSW 259

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDE---------GF-----RLK-----SVMEGSGMRP 197
           +  +    V++NTL+   CK  +L           GF     RLK     +  E   ++P
Sbjct: 260 RSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQP 319

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
            + TY+ LI   CK   ++++  L  +M   G+ P+ V  ++++ G C++G+      + 
Sbjct: 320 TLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGK------LT 373

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA  +  EM   GL+P+ ++Y  +++   K G +  A +++ +M+ RGI  D V  T ++
Sbjct: 374 EAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVM 433

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G  + GK  EAE +   +LK+ L P+  TY+ ++D +CK G  +    +L++M  +   
Sbjct: 434 DGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVP 493

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P V T+++++NG  K G L  A  +L  M+   V+P+ I Y IL++G+ K G  +  D  
Sbjct: 494 PNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDF 553

Query: 438 QSE 440
             E
Sbjct: 554 CKE 556



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 181/383 (47%), Gaps = 63/383 (16%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDE---FGK----------------RGLHATAVSFNT 169
           +  +N L+   CK G +  A+ +F+E   F K                + L  T V++ T
Sbjct: 267 IVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTT 326

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI  +CK   ++E   L   M  +G+ PDV T S+++ G C+  +L +A +L  EM E G
Sbjct: 327 LIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMG 386

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN V + T+I+   K+GR+       EA  +  +M   G++ D +T T ++DG  K G
Sbjct: 387 LDPNHVSYATIINSLFKSGRV------MEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVG 440

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             + A ++ + ++K  +  + V ++AL+ G+C+ GK+  AE +L++M K  + P+  T++
Sbjct: 441 KTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFS 500

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ-------------- 395
            +I+ + K G       +L+EM     +P    Y  L++G  K G+              
Sbjct: 501 SIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSR 560

Query: 396 -LKNANMLLDTMLD--------------------LGVVPDDITYNILLEGHCKHGN---P 431
            L+ +N++ D +L+                     G+ PD + Y  L++G+ K GN    
Sbjct: 561 RLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAA 620

Query: 432 EDFDKLQSEKGLVSDYACYTSLV 454
               +   EK +  D   Y +L+
Sbjct: 621 LSIVQEMKEKNIRFDVVAYNALI 643



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 199/458 (43%), Gaps = 84/458 (18%)

Query: 56  HLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           H+P  V+    I+  Y   G L  A+   R + +            LID   +     V 
Sbjct: 491 HVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVA 550

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
             F  E+       S  +F++L++ L + G++ +A+ +  +   +G+    V++ +LI+G
Sbjct: 551 DDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDG 610

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           + K  N      +   M+   +R DV  Y+ALI GL +  + D    +   M E GL P+
Sbjct: 611 YFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYD-PRYVCSRMIELGLAPD 669

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE- 292
            + + T+I+ +C  G+ + A D      I++EM + G+ P+ +TY IL+ G CK G +  
Sbjct: 670 CITYNTIINTYCIKGKTEDALD------ILNEMKSYGIMPNAVTYNILIGGLCKTGFVPT 723

Query: 293 -----------------------------SALDIRK------EMIKRGIELDNVAFTALI 317
                                        S L++++      EM+KRGI  D V + ALI
Sbjct: 724 PITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALI 783

Query: 318 SGFCRGGKVVEA---------------------------------------ERMLREMLK 338
            G+C G  V +A                                       E+++ EM +
Sbjct: 784 RGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNE 843

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            GL P+ ATY +++  + + G+ K    L  EM + G +P ++TYN L++   K G++  
Sbjct: 844 RGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIE 903

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
           A  LL+ +L  G +P+  TY+IL  G        + D+
Sbjct: 904 ARELLNDLLTKGRIPNSFTYDILTCGWLNLSYEPEIDR 941



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 191/469 (40%), Gaps = 106/469 (22%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  ++D + +          +  IL    +P+   ++ L+   CK GK++ A++V  +  
Sbjct: 429 CTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKME 488

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING-------- 208
           K  +    ++F+++ING+ K   L +   +   M    + P+   Y+ LI+G        
Sbjct: 489 KEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQD 548

Query: 209 ----LCKE-----------------------NRLDDAELLLHEMCERGLTPNDVIFTTLI 241
                CKE                        R+D+A  L+ +M  +G+ P+ V + +LI
Sbjct: 549 VADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLI 608

Query: 242 DGHCKNGR----IDMAGDMKE------------------------ARKIVDEMCTNGLNP 273
           DG+ K G     + +  +MKE                         R +   M   GL P
Sbjct: 609 DGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAP 668

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV------- 326
           D ITY  +++ +C +G  E ALDI  EM   GI  + V +  LI G C+ G V       
Sbjct: 669 DCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHK 728

Query: 327 --------------------------VEAER---MLREMLKVGLKPDDATYTMVIDCFCK 357
                                     +E +R   +L EM+K G+  D  TY  +I  +C 
Sbjct: 729 FLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCT 788

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG----QLKNANMLLDTMLDLGVVP 413
               +   +   +M  DG  P + TYN L+ GL   G     ++    L+  M + G+VP
Sbjct: 789 GSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVP 848

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           +  TY+IL+ G+ + GN +    L  E   KG V     Y  L+S  +K
Sbjct: 849 NAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAK 897



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 119/264 (45%), Gaps = 46/264 (17%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEG----------------------------------- 143
           E+  YG  P+   +N+L+  LCK G                                   
Sbjct: 695 EMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASG 754

Query: 144 -KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
            ++K  ++V DE  KRG+ A  V++N LI G+C   ++++  +  S M   G+ P++ TY
Sbjct: 755 LELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTY 814

Query: 203 SALINGLCKENRLDDAEL----LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
           + L+ GL     +++       L+ EM ERGL PN   +  L+ G+   GR+   G+ K+
Sbjct: 815 NTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGY---GRV---GNRKK 868

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
              +  EM T G  P   TY +L+  + K G +  A ++  +++ +G   ++  +  L  
Sbjct: 869 TIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTC 928

Query: 319 GFCRGGKVVEAERMLREMLKVGLK 342
           G+       E +R L+   ++ +K
Sbjct: 929 GWLNLSYEPEIDRSLKRSYEIEVK 952



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 130/317 (41%), Gaps = 32/317 (10%)

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
           H     F TLI  +             S M   G+ P +  ++ L+        +   +L
Sbjct: 56  HLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKL 115

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           +  +M   G+ P+      L+   CK G +D+A        +VD         D +TY  
Sbjct: 116 MYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVD--------IDNVTYNT 167

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           ++ GFC++G ++    +  EM+KRG+  D++    L+ G+CR G V  AE ++  ++  G
Sbjct: 168 VIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGG 227

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLK-EMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           +  D      +ID +C+         L++   RSD  +  V TYN L+   CK G L  A
Sbjct: 228 VTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIV-TYNTLLKAFCKTGDLTRA 286

Query: 400 NMLLDTMLDL-------------------GVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             L + +L                      + P  +TY  L+  +CK    E+   L  +
Sbjct: 287 ESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKK 346

Query: 441 ---KGLVSDYACYTSLV 454
               G++ D    +S++
Sbjct: 347 MIMNGIMPDVVTCSSIL 363


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 172/311 (55%), Gaps = 6/311 (1%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +G + ++   G  P V  +N LM  LCK GK  +A+ +FD   KRGL     ++ TL++G
Sbjct: 97  IGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHG 156

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +     L E   L ++M  +GM+ D + ++ LI    K+ ++D+  L+  +M ++GLTPN
Sbjct: 157 YASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPN 216

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V + T+IDG CK GR+D      +A    ++M   GL P+ + YT L+   C     E 
Sbjct: 217 AVNYRTVIDGLCKLGRLD------DAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEK 270

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++  E++ +GI  + V F  ++   C+ G+V+E++++   +  +G+ PD  TY+ +ID
Sbjct: 271 AEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLID 330

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +C  G      +LL  M S G  P   TY+ L+NG CK  ++++A  L   M   GV P
Sbjct: 331 GYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNP 390

Query: 414 DDITYNILLEG 424
           D ITYNI+L G
Sbjct: 391 DIITYNIILHG 401



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 169/331 (51%), Gaps = 13/331 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +N ++  L KEG +  A + + E   R +   AV++N++I    KA+ +D    +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            +VM    + P+ +TY+++++G C   + + A  +  +MC  G+ P+ V + +L+D  CK
Sbjct: 69  LTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NG+        EARKI D M   GL PD  TY  LL G+  +G L    D+   M++ G+
Sbjct: 125 NGKC------TEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +LD+  F  LI  + +  KV E   +  +M + GL P+   Y  VID  CK G       
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAML 238

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             ++M   G  P V  Y +L++ LC + + + A  L+  +LD G+ P+ + +N +L+  C
Sbjct: 239 NFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLC 298

Query: 427 KHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
           K G   +  K   L    G+  D   Y++L+
Sbjct: 299 KEGRVIESKKLFDLLGHIGVNPDVITYSTLI 329



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 171/337 (50%), Gaps = 11/337 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E+L     P+ + +N +MH  C  G+ + A  +F +    G+    V++N+L++  CK 
Sbjct: 66  MEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKN 125

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
               E  ++   M   G++PD+ TY  L++G   +  L +   LL  M + G+  +  +F
Sbjct: 126 GKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVF 185

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             LI  + K  ++D      E   +  +M   GL P+ + Y  ++DG CK G L+ A+  
Sbjct: 186 NILICAYTKQEKVD------EVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLN 239

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            ++MI +G+  + V +T+LI   C   K  +AE ++ E+L  G+ P+   +  ++D  CK
Sbjct: 240 FEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCK 299

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G      +L   +   G  P V TY+ L++G C  G++  A  LL  M+ +G+ PD +T
Sbjct: 300 EGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVT 359

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACY 450
           Y+ L+ G+CK    ED    F +++S  G+  D   Y
Sbjct: 360 YSTLINGYCKINRMEDALALFKEMES-NGVNPDIITY 395



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 149/267 (55%), Gaps = 6/267 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +VFN+L+    K+ K+ +  +VF +  ++GL   AV++ T+I+G CK   LD+       
Sbjct: 183 HVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQ 242

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+ P+V  Y++LI+ LC  ++ + AE L+ E+ ++G+ PN V F T++D  CK GR
Sbjct: 243 MIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGR 302

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +       E++K+ D +   G+NPD ITY+ L+DG+C  G ++ A+ +   M+  G++ D
Sbjct: 303 V------IESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPD 356

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           +V ++ LI+G+C+  ++ +A  + +EM   G+ PD  TY +++    +   T     L  
Sbjct: 357 SVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYA 416

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQL 396
            +   G    + TYN ++    K   L
Sbjct: 417 RITESGTQLELSTYNIILMDFAKTNSL 443



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 6/174 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            EILD G +P++  FN ++  LCKEG++ +++ +FD  G  G++   ++++TLI+G+C A
Sbjct: 276 FEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLA 335

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +D   +L + M   G++PD  TYS LING CK NR++DA  L  EM   G+ P+ + +
Sbjct: 336 GKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITY 395

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
             ++ G  +  R         A+++   +  +G   +  TY I+L  F K   L
Sbjct: 396 NIILHGLFRTRRT------AAAKELYARITESGTQLELSTYNIILMDFAKTNSL 443



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 16/235 (6%)

Query: 225 MCERGLTPNDVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
           M + G  P DV+ + T+IDG  K G +D      +A     EM    ++PD +TY  ++ 
Sbjct: 1   MADDGRCPPDVVSYNTIIDGLFKEGDVD------KAYITYHEMLDRRVSPDAVTYNSIIA 54

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
              K   ++ A+++   M+      +   + +++ G+C  G+  +A  + R+M   G++P
Sbjct: 55  ALSKAQAMDRAMEVLTVMVMP----NCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEP 110

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  TY  ++D  CKNG      ++   M   G  P + TY  L++G    G L   + LL
Sbjct: 111 DVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLL 170

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             M+  G+  D   +NIL+  + K    ++    F K++ ++GL  +   Y +++
Sbjct: 171 ALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMR-QQGLTPNAVNYRTVI 224


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 221/471 (46%), Gaps = 59/471 (12%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           SL A +L +  T +P  +LD  +  YV         Q F  +++  FR     C  L++ 
Sbjct: 124 SLHAHLLRSDHT-IPKPLLDTSLAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNA 182

Query: 104 MMRTNLPTVTLGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++R+N  + +L F  E+       G  P+V  FN+L+H  C +   ++A  + ++ G+ G
Sbjct: 183 LVRSN-SSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYG 241

Query: 160 LHATAVSFNT-----------------------------------LINGHCKAKNLDEGF 184
                V++NT                                   L++G+CK K L E  
Sbjct: 242 CCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAA 301

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            +  +M G GM PDV+TY+ ++ GLC E ++D+A  L  +M    L P+ V + TLIDG 
Sbjct: 302 EVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDG- 360

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C   R   A     A K+V+EM   G+  + +T+ I++  FC EG ++ A ++  +M++ 
Sbjct: 361 CFEHRGSDA-----AFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVES 415

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   D   +  +I+G+C+ GK+ EA +M+ EM + GLK D  T   ++   C        
Sbjct: 416 GFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDA 475

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + L  + R  G++    TY  L+ G  K  Q   A  L + M + G+V   ITYN ++ G
Sbjct: 476 YTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRG 535

Query: 425 HCKHGNPED-FDKLQS--EKGLVSDYA---------CYTSLVSKSSKYRQK 463
            C  G  +   DKL    EKGLV D +         C+   V K+ ++  K
Sbjct: 536 LCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNK 586



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 181/374 (48%), Gaps = 44/374 (11%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V+ +N ++  LC EGKI +A  + D+     L    V++NTLI+G  + +  D  
Sbjct: 311 GMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAA 370

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+L   M+  G++ +  T++ +I   C E ++D+A  ++ +M E G +P+   + T+I+G
Sbjct: 371 FKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMING 430

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPD----------------------------- 274
           +CK      AG M EA K++DEM   GL  D                             
Sbjct: 431 YCK------AGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARK 484

Query: 275 ------KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
                 ++TY  L+ G+ K+   + AL + +EM + GI    + +  +I G C  GK  +
Sbjct: 485 RGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQ 544

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A   L E+L+ GL PD++T  ++I  +C  G  +  F+   +M      P + T N L+ 
Sbjct: 545 AVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLR 604

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445
           GLC+ G L+    L +T +  G   D +TYNI++   CK    ED   L +E   K L  
Sbjct: 605 GLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEP 664

Query: 446 DYACYTSLVSKSSK 459
           D   Y ++V+  +K
Sbjct: 665 DRYTYNAIVTGLTK 678



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 163/313 (52%), Gaps = 9/313 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+++   C EGKI +A  V  +  + G      ++NT+ING+CKA  + E +++   M  
Sbjct: 390 NIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGR 449

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G++ D +T + L++ +C E +LDDA  L  +  +RG   ++V + TLI G+ K+ + D 
Sbjct: 450 KGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQAD- 508

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                 A K+ +EM   G+    ITY  ++ G C  G  + A+D   E++++G+  D   
Sbjct: 509 -----RALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDEST 563

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
              +I G+C  G V +A +   +M++  LKPD  T  +++   C+ G  + G  L     
Sbjct: 564 SNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWI 623

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G      TYN +++  CK  +L++A  L+  M    + PD  TYN ++ G  K G  E
Sbjct: 624 SKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTE 683

Query: 433 DFDKLQ---SEKG 442
           + +KL    +EKG
Sbjct: 684 EAEKLALKFAEKG 696



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 40/347 (11%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +++++ G+SP  + +N +++  CK GK+ +A  + DE G++GL     + NTL++  C  
Sbjct: 410 VKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLE 469

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           K LD+ + L       G   D  TY  LI G  K+ + D A  L  EM E G+    + +
Sbjct: 470 KQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITY 529

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
            T+I G C +G+ D A                             G +++A +  ++M  
Sbjct: 530 NTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVE 589

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           + L PD  T  ILL G C+EG LE  L +    I +G  +D V +  +IS FC+  ++ +
Sbjct: 590 HSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLED 649

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL-------KEMRSDGHLPAVE 381
           A  ++ EM    L+PD  TY  ++    K G T+   +L        +++++    P + 
Sbjct: 650 AFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELG 709

Query: 382 T----YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           T    Y+  ++ LC  G+ K+A  L       GV  +  TY  L++G
Sbjct: 710 TSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDG 756



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 144/332 (43%), Gaps = 17/332 (5%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           +G  L    L+ L+        LDDA       RK  + +       LI    +      
Sbjct: 450 KGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADR 509

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+ + G   ++  +N ++  LC  GK   A    +E  ++GL     + N +I+
Sbjct: 510 ALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIH 569

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C    +++ F+  + M    ++PD++T + L+ GLC+E  L+    L +    +G   
Sbjct: 570 GYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPM 629

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +  +I   CK  R++ A D+      + EM    L PD+ TY  ++ G  K G  E
Sbjct: 630 DTVTYNIIISSFCKERRLEDAFDL------MTEMEGKNLEPDRYTYNAIVTGLTKAGRTE 683

Query: 293 SALDIRKEMIKRGIEL-----------DNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
            A  +  +  ++G ++            ++ ++  IS  C  GK  +A ++ ++  + G+
Sbjct: 684 EAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGV 743

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             +  TY  ++D   K   + T   LL  M S
Sbjct: 744 SLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVS 775



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 113/245 (46%), Gaps = 8/245 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L+ G  P     N+++H  C EG ++ A    ++  +  L     + N L+ G C+  
Sbjct: 551 ELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREG 610

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L++G  L +     G   D  TY+ +I+  CKE RL+DA  L+ EM  + L P+   + 
Sbjct: 611 MLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYN 670

Query: 239 TLIDGHCKNGRIDMAGDM-----KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            ++ G  K GR + A  +     ++ +++  +  +  L    + Y+  +   C +G  + 
Sbjct: 671 AIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKD 730

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT---YTM 350
           A+ + ++  ++G+ L+   +  L+ G  +  K      +L  M+   ++  D     Y  
Sbjct: 731 AMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQFFDRNPMRYAH 790

Query: 351 VIDCF 355
           ++ CF
Sbjct: 791 ILWCF 795


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 218/444 (49%), Gaps = 28/444 (6%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG---------------------MGSSASL 45
           L +Y+ ++  L   K   QA DLLH++   KG                     +  + SL
Sbjct: 170 LFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSL 229

Query: 46  FASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105
           F ++L+ RG     +   +++        +D A Q F  + K+           L+    
Sbjct: 230 FDAMLD-RGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYC 288

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
            +  P   +G + ++  +G  P V  +  LM  LCK GK  +A+ +FD   KRG    + 
Sbjct: 289 SSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDST 348

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++ TL++G+     L E   L  +M   GM+   + ++ ++    K N++D+A L+   M
Sbjct: 349 TYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNM 408

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
            ++GL P+ V + T++D  C  GR+D      +A    + + + GL P+ + +T L+ G 
Sbjct: 409 RQQGLNPDIVNYGTVLDILCTAGRVD------DALSQFNSLKSEGLAPNIVVFTTLIHGL 462

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C     +   ++  EMI RGI LD + F A++   C+ G+V+EA+ +   M+++G++P+ 
Sbjct: 463 CTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNT 522

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY  +ID +C +G      +LL  M  +G  P+  TYN ++NG  ++G++++   LL  
Sbjct: 523 NTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLRE 582

Query: 406 MLDLGVVPDDITYNILLEGHCKHG 429
           M   GV P  +TY +LL+G  + G
Sbjct: 583 MDGKGVNPGIVTYEMLLQGLFQAG 606



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 163/344 (47%), Gaps = 41/344 (11%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  +++ L +EG++  A  +FD    RG     V+++++I+   K + +D+  ++ +
Sbjct: 207 VVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFT 266

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +G+ PD   Y++L++G C   +  +A  +  +MC  G+ P+ V +T L+D  CKNG
Sbjct: 267 RMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNG 326

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +        EARKI D +   G  PD  TY  LL G+  EG L    D+   M+K+G++L
Sbjct: 327 K------STEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQL 380

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
            +  F  ++  + +  KV EA  +   M + GL PD   Y  V+D  C  G         
Sbjct: 381 GHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQF 440

Query: 369 KEMRSDGHLPAVETY-----------------------------------NALMNGLCKH 393
             ++S+G  P +  +                                   NA+M  LCK 
Sbjct: 441 NSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKK 500

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           G++  A  L D M+ +G+ P+  TYN L++G+C  G  ++  KL
Sbjct: 501 GRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 544



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 173/359 (48%), Gaps = 17/359 (4%)

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLH 161
           R+ R +L   T+G    ++  G   S  +F+ L+  LC   +  DA  +V     + G  
Sbjct: 111 RLGRLDLAFATVG---RVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCK 167

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVM-EGSGMRP-DVYTYSALINGLCKENRLDDAE 219
               S+  L+ G C  K   +   L  +M +  G  P DV  Y+ +INGL +E +LD A 
Sbjct: 168 PDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAY 227

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L   M +RG +P+ V ++++I    K   +D      +A ++   M  NG+ PD I YT
Sbjct: 228 SLFDAMLDRGPSPDVVTYSSIISALSKTQAMD------KATQVFTRMVKNGVMPDCIMYT 281

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G+C  G  + A+ I K+M + G+E D V +TAL+   C+ GK  EA ++   ++K 
Sbjct: 282 SLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKR 341

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G KPD  TY  ++  +   G       LL  M   G       +N +M    KH ++  A
Sbjct: 342 GHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEA 401

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            ++   M   G+ PD + Y  +L+  C  G  +D    F+ L+SE GL  +   +T+L+
Sbjct: 402 LLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSE-GLAPNIVVFTTLI 459



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 176/355 (49%), Gaps = 17/355 (4%)

Query: 110 PTVTLGFYLEILDYGYS---PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
           P V +  +  +   G +   P++  + +++    + G++  A          GL  + + 
Sbjct: 77  PAVAISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPIL 136

Query: 167 FNTLINGHCKAKNLDEGFRLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           F+ L+ G C  +   +   +    M   G +PD+++Y+ L+ GLC +     A  LLH M
Sbjct: 137 FSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIM 196

Query: 226 CE-RGLTPNDVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
            + +G  P DV+ +TT+I+G  + G++D      +A  + D M   G +PD +TY+ ++ 
Sbjct: 197 ADHKGRCPLDVVAYTTVINGLLREGQLD------KAYSLFDAMLDRGPSPDVVTYSSIIS 250

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
              K   ++ A  +   M+K G+  D + +T+L+ G+C  GK  EA  + ++M + G++P
Sbjct: 251 ALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEP 310

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           D  TYT ++D  CKNG +    ++   +   GH P   TY  L++G    G L   + LL
Sbjct: 311 DVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLL 370

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           D M+  G+      +N+++  + KH   ++    F  ++ ++GL  D   Y +++
Sbjct: 371 DLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMR-QQGLNPDIVNYGTVL 424



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 155/329 (47%), Gaps = 23/329 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+ ++ +L  +   ++AR +   +V K+G    ++       T GT L G   +  ++  
Sbjct: 315 YTALMDYLCKNGKSTEARKIFDSLV-KRGHKPDST-------TYGTLLHGYATEGALVEM 366

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
            DL  LD  ++    L  H F +       ++    + N     L  +  +   G +P +
Sbjct: 367 HDL--LDLMMKKGMQLGHHIFNM-------IMGAYAKHNKVDEALLVFSNMRQQGLNPDI 417

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             +  ++  LC  G++ DA   F+     GL    V F TLI+G C     D+   L   
Sbjct: 418 VNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFE 477

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+  D   ++A++  LCK+ R+ +A+ L   M   G+ PN   + TLIDG+C +G+
Sbjct: 478 MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGK 537

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D      EA K++  M  NG+ P  +TY  +++G+ + G +E  L + +EM  +G+   
Sbjct: 538 MD------EAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPG 591

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLK 338
            V +  L+ G  + G+ V A+ +   M+K
Sbjct: 592 IVTYEMLLQGLFQAGRTVAAKELYLRMIK 620


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 183/356 (51%), Gaps = 14/356 (3%)

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           DAI+ F  +     R   +    ++D ++  N     +GFY E+ + G   SV   N+L+
Sbjct: 103 DAIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILI 162

Query: 137 HKLCKEGKIKDAQM-VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
             LCK  +  D+ + +F E   RG    + ++ TLING C+  N+ E   L   ME  G 
Sbjct: 163 KALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGF 222

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
              V TY++LI+GLC+ N LD+A  LL EM    + PN   +++L+DG CK       G 
Sbjct: 223 SASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCK------GGH 276

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
             +A ++++ M      P+ +TY+ L++G CKE  L  A++I   M  +G++ +   +  
Sbjct: 277 SSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGK 336

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYT-------MVIDCFCKNGDTKTGFRLL 368
           +ISG C  G   EA   + EM+  G+ P+ A+++       MV+   C N D    F+L 
Sbjct: 337 IISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLY 396

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             MR+      ++T++ L+   CK G L  A  +L+ M+  G +PD+  +N+++ G
Sbjct: 397 LSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGG 452



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 13/294 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+ + G  P  Y +  L++ LC+ G I +A+ +F E  ++G  A+ V++ +LI+
Sbjct: 175 ALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIH 234

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C++ NLDE   L   M+ + + P+V+TYS+L++GLCK      A  LL  M ++   P
Sbjct: 235 GLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLP 294

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V ++TLI+G CK  +      ++EA +I+D M   GL P+   Y  ++ G C  G  +
Sbjct: 295 NMVTYSTLINGLCKERK------LREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQ 348

Query: 293 SALDIRKEMIKRGIELDNVAFT-------ALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            A +   EM+  GI  +  +++        ++ G C       A ++   M    +  + 
Sbjct: 349 EAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEI 408

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            T+  ++ CFCK GD     R+L+EM  DG +P    +N ++ GL    +++ A
Sbjct: 409 DTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREA 462



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 172/360 (47%), Gaps = 17/360 (4%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R + P   +  + ++  +   P+   +  ++  L +E  +K A   + E  + G+ ++ V
Sbjct: 97  RVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVV 156

Query: 166 SFNTLINGHCKAK-NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           S N LI   CK K  +D   R+   M   G +PD YTY  LINGLC+   + +A+ L  E
Sbjct: 157 SLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKE 216

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M ++G + + V +T+LI G C++  +D      EA  +++EM  N + P+  TY+ L+DG
Sbjct: 217 MEQKGFSASVVTYTSLIHGLCQSNNLD------EAIGLLEEMKRNDIEPNVFTYSSLMDG 270

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK G    A+ + + M K+    + V ++ LI+G C+  K+ EA  +L  M   GLKP+
Sbjct: 271 LCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPN 330

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-------VETYNALMNGLCKHGQLK 397
              Y  +I   C  G  +     + EM   G  P        V  +N ++ GLC +    
Sbjct: 331 AGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPP 390

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            A  L  +M    +  +  T++ L++  CK G+     ++  E    G + D   +  ++
Sbjct: 391 RAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVI 450



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 153/310 (49%), Gaps = 5/310 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+      F +++ +L    + + A+ + +   +     T   F ++  G+ +     + 
Sbjct: 45  GFRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDA 104

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+   MEG  +RP    Y  +++ L +EN +  A     EM E G+  + V    LI  
Sbjct: 105 IRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKA 164

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN        +  A +I  EM   G  PD  TY  L++G C+ G++  A ++ KEM +
Sbjct: 165 LCKNKET-----VDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQ 219

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G     V +T+LI G C+   + EA  +L EM +  ++P+  TY+ ++D  CK G +  
Sbjct: 220 KGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQ 279

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +LL+ M    HLP + TY+ L+NGLCK  +L+ A  +LD M   G+ P+   Y  ++ 
Sbjct: 280 AMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIIS 339

Query: 424 GHCKHGNPED 433
           G C  G+ ++
Sbjct: 340 GLCAAGSYQE 349



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 146/292 (50%), Gaps = 27/292 (9%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           +D A++ F+        +P RGC+        LI+ + R    +     + E+   G+S 
Sbjct: 172 VDSALRIFQ-------EMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSA 224

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           SV  +  L+H LC+   + +A  + +E  +  +     ++++L++G CK  +  +  +L 
Sbjct: 225 SVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLL 284

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            VM+     P++ TYS LINGLCKE +L +A  +L  M  +GL PN  ++  +I G C  
Sbjct: 285 EVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCA- 343

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI-------LLDGFCKEGDLESALDIRKE 300
                AG  +EA   +DEM   G++P++ ++++       ++ G C   D   A  +   
Sbjct: 344 -----AGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLS 398

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
           M  R I ++   F  L+  FC+ G + +A R+L EM+  G  PD+  + +VI
Sbjct: 399 MRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVI 450



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 15/310 (4%)

Query: 35  SKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           +K+ + S+  +F   +  RG          L+     LG + +A + F+ + +  F    
Sbjct: 168 NKETVDSALRIFQE-MPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASV 226

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                LI  + ++N     +G   E+      P+V+ ++ LM  LCK G    A  + + 
Sbjct: 227 VTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEV 286

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             K+      V+++TLING CK + L E   +   M   G++P+   Y  +I+GLC    
Sbjct: 287 MDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGS 346

Query: 215 LDDAELLLHEMCERGLTPNDVIFT-------TLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
             +A   + EM   G++PN   ++        ++ G C N       D   A ++   M 
Sbjct: 347 YQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNN------VDPPRAFQLYLSMR 400

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           T  ++ +  T+  L+  FCK GDL  A  I +EM+  G   D   +  +I G     KV 
Sbjct: 401 TRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVR 460

Query: 328 EA-ERMLREM 336
           EA E++L E+
Sbjct: 461 EATEQLLVEL 470



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           NG   D  T+ +++           A  + + M +    +    F ++  G+ R  + ++
Sbjct: 44  NGFRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLD 103

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A R+  +M    L+P    Y  ++D   +    K      +EMR  G   +V + N L+ 
Sbjct: 104 AIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIK 163

Query: 389 GLCKHGQ-LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLV 444
            LCK+ + + +A  +   M + G  PD  TY  L+ G C+ GN  +  +L  E   KG  
Sbjct: 164 ALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFS 223

Query: 445 SDYACYTSLV 454
           +    YTSL+
Sbjct: 224 ASVVTYTSLI 233


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 201/426 (47%), Gaps = 20/426 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           + G    A+    ILE  G     +  + L+  Y   G +D A++          R+   
Sbjct: 153 RSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLE-------RMSVA 205

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYS----PSVYVFNVLMHKLCKEGKIKDAQMV 151
                 + ++R+   +  L   +E+LD        P V  + +L+   C +  +  A  +
Sbjct: 206 PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKL 265

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            DE  K+G     V++N LING CK   LDE  +  + M   G +P+V T++ ++  +C 
Sbjct: 266 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCS 325

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
             R  DAE LL +M  +G +P+ V F  LI+  C+   +  A D      ++++M  +G 
Sbjct: 326 TGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAID------VLEKMPKHGC 379

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P+ ++Y  LL GFC+E  ++ A++  + M+ RG   D V +  L++  C+ GKV  A  
Sbjct: 380 VPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVE 439

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L ++   G  P   TY  VID   K G T+    LL+EMR  G  P + TY+ L+ GL 
Sbjct: 440 ILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLG 499

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
           + G++  A  +   M  L + P  +TYN ++ G CK        DF     EKG     A
Sbjct: 500 REGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEA 559

Query: 449 CYTSLV 454
            YT L+
Sbjct: 560 TYTILI 565



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 159/316 (50%), Gaps = 9/316 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L F   ++  G  P V     L+   C+ GK K A  + +     G     +++N LI G
Sbjct: 126 LKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGG 185

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +CK+  +D+      V+E   + PDV TY+ ++  LC   +L +A  +L    +R   P+
Sbjct: 186 YCKSGEIDKALE---VLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPD 242

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + +T LI+  C +  +       +A K++DEM   G  PD +TY +L++G CKEG L+ 
Sbjct: 243 VITYTILIEATCNDSGVG------QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDE 296

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+     M   G + + +    ++   C  G+ ++AER+L +ML+ G  P   T+ ++I+
Sbjct: 297 AIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILIN 356

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C+         +L++M   G +P   +YN L++G C+  ++  A   L+ M+  G  P
Sbjct: 357 FLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 416

Query: 414 DDITYNILLEGHCKHG 429
           D +TYN LL   CK G
Sbjct: 417 DIVTYNTLLTALCKDG 432



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 169/329 (51%), Gaps = 12/329 (3%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +  N+ + KL + G++++     +    +G     ++  +LI G C++    +  R+  +
Sbjct: 107 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEI 166

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +E SG  PDV TY+ LI G CK   +D A  +L  M    + P+ V + T++   C +G+
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGK 223

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 +KEA +++D        PD ITYTIL++  C +  +  A+ +  EM K+G + D
Sbjct: 224 ------LKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPD 277

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  LI+G C+ G++ EA + L  M   G KP+  T+ +++   C  G      RLL 
Sbjct: 278 VVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLS 337

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P+V T+N L+N LC+   L  A  +L+ M   G VP+ ++YN LL G C+  
Sbjct: 338 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEK 397

Query: 430 NPE---DFDKLQSEKGLVSDYACYTSLVS 455
             +   ++ ++   +G   D   Y +L++
Sbjct: 398 KMDRAIEYLEIMVSRGCYPDIVTYNTLLT 426



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 43/284 (15%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGY 125
           G LD+AI       K    +P+ GC+        ++  M  T           ++L  G 
Sbjct: 292 GRLDEAI-------KFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGC 344

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SPSV  FN+L++ LC++  +  A  V ++  K G    ++S+N L++G C+ K +D    
Sbjct: 345 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIE 404

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              +M   G  PD+ TY+ L+  LCK+ ++D A  +L+++  +G +P  + + T+IDG  
Sbjct: 405 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLT 464

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           K G+ + A                             G + EA KI  +M    + P  +
Sbjct: 465 KVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAV 524

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           TY  ++ G CK      A+D    M+++G +     +T LI G 
Sbjct: 525 TYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           ++    I L    + G+LE  L   + MI +G   D +A T+LI GFCR GK  +A R++
Sbjct: 105 EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIM 164

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             +   G  PD  TY ++I  +CK+G+      +L+ M      P V TYN ++  LC  
Sbjct: 165 EILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDS 221

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           G+LK A  +LD  L     PD ITY IL+E  C         KL  E   KG   D   Y
Sbjct: 222 GKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTY 281

Query: 451 TSLVS 455
             L++
Sbjct: 282 NVLIN 286



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 15/210 (7%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LLH    +K M   A  +  I+ +RG +   +  + L+      G +D A++        
Sbjct: 389 LLHGFCQEKKM-DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILN----- 442

Query: 89  YFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
             ++ ++GC         +ID + +       +    E+   G  P +  ++ L+  L +
Sbjct: 443 --QLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGR 500

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
           EGK+ +A  +F +     +  +AV++N ++ G CKA+         + M   G +P   T
Sbjct: 501 EGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEAT 560

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLT 231
           Y+ LI G+  E   ++A  LL+E+C RG  
Sbjct: 561 YTILIEGIADEGLAEEALELLNELCSRGFV 590


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 183/357 (51%), Gaps = 12/357 (3%)

Query: 111 TVTLGFYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           T  +G  L++LD    SP V  +N ++  LC  GK+K+A  V D   +R  +   +++  
Sbjct: 193 TGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTI 252

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI   CK   + +  +L   M   G +PDV TY+ LING+CKE RLD+A   L+ M   G
Sbjct: 253 LIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYG 312

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             PN +    ++   C  GR        +A K + EM   G +P  +T+ IL++  C++G
Sbjct: 313 CQPNVITHNIILRSMCSTGR------WMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKG 366

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +  A+D+ ++M + G   +++++  L+   C+  K+  A   L  M+  G  PD  TY 
Sbjct: 367 LIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYN 426

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            ++   CK+G       +L ++ S G  P + TYN +++GL K G+  +A  LLD M   
Sbjct: 427 TLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGK 486

Query: 410 GVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           G+ PD ITY+ L+ G  + G  ++    F  L+ E G+  +   Y S++    K RQ
Sbjct: 487 GLKPDIITYSTLVGGLSREGKVDEAIAFFHDLE-EMGVKPNAITYNSIMLGLCKARQ 542



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 198/456 (43%), Gaps = 47/456 (10%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K G    A+    ILE  G     +  + L+  Y   G +  A+Q          R+   
Sbjct: 157 KTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLD-------RMSVS 209

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYS----PSVYVFNVLMHKLCKEGKIKDAQMV 151
                 + ++RT   +  L   +E+LD        P V  + +L+   CKE  +  A  +
Sbjct: 210 PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKL 269

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            DE   +G     V++N LING CK   LDE  R  + M   G +P+V T++ ++  +C 
Sbjct: 270 LDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCS 329

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD---------------- 255
             R  DAE  L EM  +G +P+ V F  LI+  C+ G I  A D                
Sbjct: 330 TGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLS 389

Query: 256 -------------MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
                        M+ A + +D M + G  PD +TY  LL   CK+G ++ A++I  ++ 
Sbjct: 390 YNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLG 449

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G     + +  +I G  + GK  +A ++L EM   GLKPD  TY+ ++    + G   
Sbjct: 450 SKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVD 509

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
                  ++   G  P   TYN++M GLCK  Q   A   L  M+  G  P + +Y IL+
Sbjct: 510 EAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILI 569

Query: 423 EGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSS 458
           EG    G  ++  +L +E        C   +V KSS
Sbjct: 570 EGLAYEGLAKEALELLNE-------LCSRGVVKKSS 598



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 9/327 (2%)

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
           R++R         F  +++  G  P +     L+  LCK GK   A  V +     G   
Sbjct: 119 RLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVP 178

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             +++N LI+G+CK   +    +L   M  S   PDV TY+ ++  LC   +L +A  +L
Sbjct: 179 DVITYNVLISGYCKTGEIGSALQLLDRMSVS---PDVVTYNTILRTLCDSGKLKEAMEVL 235

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
               +R   P+ + +T LI+  CK   +       +A K++DEM   G  PD +TY +L+
Sbjct: 236 DRQMQRECYPDVITYTILIEATCKESGVG------QAMKLLDEMRDKGCKPDVVTYNVLI 289

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G CKEG L+ A+     M   G + + +    ++   C  G+ ++AE+ L EM++ G  
Sbjct: 290 NGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCS 349

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P   T+ ++I+  C+ G       +L++M   G  P   +YN L++ LCK  +++ A   
Sbjct: 350 PSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEY 409

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHG 429
           LD M+  G  PD +TYN LL   CK G
Sbjct: 410 LDIMVSRGCYPDIVTYNTLLTALCKDG 436



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 165/327 (50%), Gaps = 12/327 (3%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           + +L + G++++     ++   RG     ++  +LI G CK     +  R+  ++E SG 
Sbjct: 117 LRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGA 176

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PDV TY+ LI+G CK   +  A  LL  M    ++P+ V + T++   C +G+      
Sbjct: 177 VPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGK------ 227

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +KEA +++D        PD ITYTIL++  CKE  +  A+ +  EM  +G + D V +  
Sbjct: 228 LKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNV 287

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           LI+G C+ G++ EA R L  M   G +P+  T+ +++   C  G      + L EM   G
Sbjct: 288 LINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG 347

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE--- 432
             P+V T+N L+N LC+ G +  A  +L+ M   G  P+ ++YN LL   CK    E   
Sbjct: 348 CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAI 407

Query: 433 DFDKLQSEKGLVSDYACYTSLVSKSSK 459
           ++  +   +G   D   Y +L++   K
Sbjct: 408 EYLDIMVSRGCYPDIVTYNTLLTALCK 434



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 6/253 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + R  L    +    ++  +G +P+   +N L+H LCK+ K++ A    D    RG
Sbjct: 358 LINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG 417

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            +   V++NTL+   CK   +D    + + +   G  P + TY+ +I+GL K  + DDA 
Sbjct: 418 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAI 477

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM  +GL P+ + ++TL+ G  + G++D      EA     ++   G+ P+ ITY 
Sbjct: 478 KLLDEMKGKGLKPDIITYSTLVGGLSREGKVD------EAIAFFHDLEEMGVKPNAITYN 531

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ G CK      A+D    M+ RG +    ++  LI G    G   EA  +L E+   
Sbjct: 532 SIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSR 591

Query: 340 GLKPDDATYTMVI 352
           G+    +   +V+
Sbjct: 592 GVVKKSSAEQVVV 604


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 25/378 (6%)

Query: 59  GLVLDALMIVYVDLGF--LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           G + DAL  +    GF    DA+    LL  H  +      R L+ RM +          
Sbjct: 218 GTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKD--------- 268

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
                  G +P+   +N L+    + G IK A  V +     G      ++N L  G C+
Sbjct: 269 -------GVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQ 321

Query: 177 AKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           A  +DE FRLK  ME  G + PDV TY+ L +   K     DA  LL EM E+G+    V
Sbjct: 322 AGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLV 381

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
               +I G CK+G      +++ A   +++M  +GL PD ITY  L+   CK G++  A 
Sbjct: 382 THNIVIKGLCKDG------ELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAY 435

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM++RG++LD      ++   C+  +  EA+ +L+   + G  PD+ +Y  V+  +
Sbjct: 436 TLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAY 495

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K  +++   RL  EM      P++ TYN L+ GL + G+LK A   L+ +++ G+VPDD
Sbjct: 496 FKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDD 555

Query: 416 ITYNILLEGHCKHGNPED 433
            TYNI++  +CK G+ E+
Sbjct: 556 TTYNIIIHAYCKEGDLEN 573



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 184/369 (49%), Gaps = 33/369 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDE 182
           G+ P ++ +NVL   LC+ GK+ +A  + DE  + G L    V++NTL +   K +   +
Sbjct: 304 GFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSD 363

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M   G++  + T++ +I GLCK+  L+ A   L++M + GL P+ + + TLI 
Sbjct: 364 ALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIH 423

Query: 243 GHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTNGLNP 273
            HCK G I  A  +                             +EA+ ++      G  P
Sbjct: 424 AHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMP 483

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D+++Y  ++  + KE + E AL +  EMI++ +      +  LI G  R G++ EA   L
Sbjct: 484 DEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKL 543

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            E+++ GL PDD TY ++I  +CK GD +  F+   +M  +   P V T N LMNGLC +
Sbjct: 544 NELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLN 603

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACY 450
           G+L  A  L ++ ++ G   D ITYN L++  CK G+ +    F      +GL  D   Y
Sbjct: 604 GKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTY 663

Query: 451 TSLVSKSSK 459
             ++S  S+
Sbjct: 664 NVVLSALSE 672



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 158/328 (48%), Gaps = 14/328 (4%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LG   ++ D G +P V  +N L+H  CK G I  A  + DE  +RGL     + NT++  
Sbjct: 400 LGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYN 459

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK K  +E   L       G  PD  +Y  ++    KE   + A  L  EM E+ LTP+
Sbjct: 460 LCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPS 519

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              + TLI G  + GR      +KEA   ++E+   GL PD  TY I++  +CKEGDLE+
Sbjct: 520 ISTYNTLIKGLSRMGR------LKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLEN 573

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A     +M++   + D V    L++G C  GK+ +A ++    ++ G K D  TY  +I 
Sbjct: 574 AFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQ 633

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK+GD  T      +M + G  P   TYN +++ L + G+ + A  +L  + + G + 
Sbjct: 634 TMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLS 693

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSEK 441
              +  +L         P   D+ +S K
Sbjct: 694 QSFSSPLL--------KPSSVDEAESGK 713



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 159/344 (46%), Gaps = 41/344 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G     +  N +++ LCKE + ++AQ +     +RG     VS+ T++  + K  
Sbjct: 440 EMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEY 499

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N +   RL   M    + P + TY+ LI GL +  RL +A   L+E+ E+GL P+D  + 
Sbjct: 500 NSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYN 559

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I  +CK G      D++ A +  ++M  N   PD +T   L++G C  G L+ AL + 
Sbjct: 560 IIIHAYCKEG------DLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLF 613

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +  +++G ++D + +  LI   C+ G V  A     +M   GL+PD  TY +V+    + 
Sbjct: 614 ESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEA 673

Query: 359 GDTKTGFRLLKEMRSDGHLP-----------------------------------AVETY 383
           G T+    +L ++   G L                                    A E Y
Sbjct: 674 GRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAY 733

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             L+NGLC  GQ K A  +LD M+  G+  D  TY  L+EG  K
Sbjct: 734 TKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGLVK 777



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 6/210 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+ ++++  + P V   N LM+ LC  GK+  A  +F+ + ++G     +++NTLI   C
Sbjct: 577 FHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMC 636

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  ++D      + ME  G++PD +TY+ +++ L +  R ++A+ +LH++ E G      
Sbjct: 637 KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESG-----T 691

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           +  +      K   +D A   K+A K  +E   N  +     YT L++G C  G  + A 
Sbjct: 692 LSQSFSSPLLKPSSVDEAESGKDA-KTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAK 750

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGK 325
            I  EM+++G+ +D+  +  L+ G  +  K
Sbjct: 751 AILDEMMQKGMSVDSSTYITLMEGLVKRQK 780



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 1/155 (0%)

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L+P+  T+ +L+   C +G L  AL     M   G+  D V +  L++  CR G + EA 
Sbjct: 200 LHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 259

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +L  M K G+ P   TY  ++  + + G  K   ++++ M ++G  P + TYN L  GL
Sbjct: 260 ALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGL 319

Query: 391 CKHGQLKNANMLLDTMLDLG-VVPDDITYNILLEG 424
           C+ G++  A  L D M  LG ++PD +TYN L + 
Sbjct: 320 CQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADA 354



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           +++LD  + ++   +  ++  F  L+   C  G + +A   L  M   GL PD  TY  +
Sbjct: 186 QASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTL 245

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ++  C+ G       LL  M+ DG  P   TYN L++   + G +K A  +++ M   G 
Sbjct: 246 LNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGF 305

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQSEK----GLVSDYACYTSLVSKSSKYR 461
            PD  TYN+L  G C+ G  ++  +L+ E      L+ D   Y +L     K R
Sbjct: 306 EPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCR 359


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 182/370 (49%), Gaps = 36/370 (9%)

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
           A  C  L+  + R            E+ +    P+V  F +L++ LCK  ++ +A  VF+
Sbjct: 305 AASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFE 364

Query: 154 EF--GKRG---LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPDVYTYSALIN 207
           +   G+     +    +++NTLI+G CK    +EG  L   M       P+  TY+ LI+
Sbjct: 365 KMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLID 424

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------- 253
           G CK + ++ A  L  +M + G+ PN V   TL+DG CK+GRI+ A              
Sbjct: 425 GYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKG 484

Query: 254 ---------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
                           ++++A ++ DEM   G +PD I Y  L+ G  + G L+ A  + 
Sbjct: 485 NAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVL 544

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +M + G   D V+F  LI+GFCR  K+ EA  ML+EM   G+KPD  TY  +I  F K 
Sbjct: 545 SKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKT 604

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG-VVPDDIT 417
           GD  T  RL+K+M  +G +P V TY AL++  C +G L  A  +   M     V P+ + 
Sbjct: 605 GDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVI 664

Query: 418 YNILLEGHCK 427
           YNIL+   C+
Sbjct: 665 YNILINSLCR 674



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 165/299 (55%), Gaps = 7/299 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +N L+   CK   I+ A+ +FD+  K G+    V+ NTL++G CK   ++     
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M+G G++ +  TY+ALI   C  N ++ A  L  EM E G +P+ +++ TLI G  +
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQ 533

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D       A  ++ +M   G +PD +++ +L++GFC++  L+ A ++ KEM   GI
Sbjct: 534 AGKLD------RASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGI 587

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + D V +  LIS F + G    A R++++M+K GL P   TY  +I  +C NG+     +
Sbjct: 588 KPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMK 647

Query: 367 LLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + ++M S   +P     YN L+N LC+  Q+  A  L+D M   GV P+  T+N + +G
Sbjct: 648 IFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKG 706



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 163/326 (50%), Gaps = 7/326 (2%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLID   + ++       + ++   G  P+V   N L+  +CK G+I  A   F+E   +
Sbjct: 421 CLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGK 480

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL   AV++  LI   C   N+++   L   M  +G  PD   Y  LI+GL +  +LD A
Sbjct: 481 GLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRA 540

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             +L +M E G +P+ V F  LI+G C+  ++D      EA +++ EM   G+ PD +TY
Sbjct: 541 SFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLD------EAYEMLKEMENAGIKPDGVTY 594

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+  F K GD  +A  + K+M+K G+    V + ALI  +C  G + EA ++ R+M  
Sbjct: 595 NTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSS 654

Query: 339 VG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
              + P+   Y ++I+  C+         L+ +M+  G  P   T+NA+  GL +   L 
Sbjct: 655 TSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLS 714

Query: 398 NANMLLDTMLDLGVVPDDITYNILLE 423
            A  L+D M +    PD IT  IL E
Sbjct: 715 KAFELMDRMTEHACNPDYITMEILTE 740



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 195/424 (45%), Gaps = 27/424 (6%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI--------DRM 104
           R TH+  +++D L       G +DDA+     + +     P       I        D++
Sbjct: 190 RLTHIRNILIDVLF----RKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKV 245

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            R       +G   +  ++   P+      L+ +LC+ G+   A  V     K G    A
Sbjct: 246 GRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEA 305

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            S N L+    +A+       L + M+   ++P+V T+  LIN LCK  R+D+A  +  +
Sbjct: 306 ASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEK 365

Query: 225 MC---ERG--LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITY 278
           M      G  + P+ + + TLIDG CK GR       +E   +V+ M +     P+ +TY
Sbjct: 366 MNGGESNGFLVEPDVITYNTLIDGLCKVGR------QEEGLGLVERMRSQPRCMPNTVTY 419

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+DG+CK   +E+A ++  +M K G+  + V    L+ G C+ G++  A     EM  
Sbjct: 420 NCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQG 479

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            GLK +  TYT +I  FC   + +    L  EM   G  P    Y  L++GL + G+L  
Sbjct: 480 KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDR 539

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           A+ +L  M + G  PD +++N+L+ G C+    ++  ++  E    G+  D   Y +L+S
Sbjct: 540 ASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLIS 599

Query: 456 KSSK 459
             SK
Sbjct: 600 HFSK 603



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 7/290 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G ++ A++ F  ++    +  A     LI      N     +  + E+L+ G SP   V+
Sbjct: 465 GRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVY 524

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L+  L + GK+  A  V  +  + G     VSFN LING C+   LDE + +   ME 
Sbjct: 525 YTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN 584

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G++PD  TY+ LI+   K      A  L+ +M + GL P  V +  LI  +C NG +D 
Sbjct: 585 AGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLD- 643

Query: 253 AGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                EA KI  +M  T+ + P+ + Y IL++  C++  ++ AL +  +M  +G++ +  
Sbjct: 644 -----EAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTN 698

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            F A+  G      + +A  ++  M +    PD  T  ++ +     G+T
Sbjct: 699 TFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGET 748


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 175/335 (52%), Gaps = 13/335 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  + ++ +    LG    +++ G SP V  FN ++  LCKE +I DA  VF    +RG
Sbjct: 479 LVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 538

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V+++TLI+G  K   +DE  +L + M   G R +  TYS +++GL K  R++DA 
Sbjct: 539 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 598

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           ++L +M + G  P+ V + TLIDG  K  R      ++EA  ++ EM   G +P  +TYT
Sbjct: 599 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQR------LREAVGLLREMLEAGFHPSVVTYT 652

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA----ERMLRE 335
            L  G C+ G  + A++I   M  RG   + + +++++ G C+ G+V EA    E+M R+
Sbjct: 653 TLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARD 712

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
            +   + P    Y+ +ID  CK G     +  L+ M   G +P V T++ L+NGLC  G+
Sbjct: 713 EV---VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGR 769

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           +     L   M + G   D   YN ++  +C  G 
Sbjct: 770 IDTGLELFCGMAERGCKADIYAYNAMINAYCLKGE 804



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 199/431 (46%), Gaps = 36/431 (8%)

Query: 61   VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
            V+D L+ V    G ++DA+   R +R       A     LID   +       +G   E+
Sbjct: 584  VVDGLLKV----GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM 639

Query: 121  LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
            L+ G+ PSV  +  L H LC+ G+  +A  + D    RG    A++++++++G CKA  +
Sbjct: 640  LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 699

Query: 181  DEGF-RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E     + +     + P V  YSALI+GLCK  R+D+A   L  M   G  P+ V F+ 
Sbjct: 700  TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759

Query: 240  LIDGHCKNGRID-----------------------------MAGDMKEARKIVDEMCTNG 270
            LI+G C  GRID                             + G+   A  +++EM T+G
Sbjct: 760  LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHG 819

Query: 271  LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
            +  + +T+ I++   C    ++ A+     + +     D +++  LI+      +  +A 
Sbjct: 820  IAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDC--RDEISYNTLITSLVASRRSEQAL 877

Query: 331  RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             +LR M+  G  PD   Y  V+D   K G  +   +LL+EMRS GH P + TY  +++GL
Sbjct: 878  ELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGL 937

Query: 391  CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACY 450
             K  QL  A    + ML   + PD I Y+ L++  CK    +D  KL    G+      Y
Sbjct: 938  SKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRSSGIEPTITMY 997

Query: 451  TSLVSKSSKYR 461
            +++V    K R
Sbjct: 998  STMVDSLCKNR 1008



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 151/294 (51%), Gaps = 12/294 (4%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           V++N LING CKA  + + F         G RP V TYS +I+GLC++N +D    LL E
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  RG  PN V + TL++     GR       KEA  +++ M  NG  P+ IT+ +++ G
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGR------AKEAFSLLERMAANGCPPELITFGLIIKG 115

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CKEG++E+A  +  EM+ RG   D    T L+   C  G+V EA    +++L +G  PD
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  ++D   K G  +    +L+ +      P V T+   ++GL K G L  A    D
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSS 458
           +M   GV P+ +TY+ L++G CK G      KL    GL+ D      + + SS
Sbjct: 236 SMPQTGVSPNTVTYDALIDGLCKAG------KLDIALGLLRDKNSQAGMFAFSS 283



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 187/383 (48%), Gaps = 55/383 (14%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FN LM+ LC+  ++ +A  +FD   + G  A  +++N L+ G CK + + E +R 
Sbjct: 308 PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRH 367

Query: 187 KSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDGH 244
             +M  + G  P+V T+S LI GLC   R++ A  +   M    G++PN   +  L++G 
Sbjct: 368 VELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGL 427

Query: 245 CKNG----------------------------RIDM----------------------AG 254
           CK G                             +D                       +G
Sbjct: 428 CKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSG 487

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            +++A  +++ M  +GL+PD IT+  +LDG CKE  +  A ++ K  ++RG   + V ++
Sbjct: 488 MVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYS 547

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI G  +  K+ EA ++L +M+++G + +  TY+ V+D   K G  +    +L++MR  
Sbjct: 548 TLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDA 607

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G LP   TYN L++G  K  +L+ A  LL  ML+ G  P  +TY  L  G C+ G  ++ 
Sbjct: 608 GCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEA 667

Query: 435 DKL---QSEKGLVSDYACYTSLV 454
            ++    + +G   +   Y+S+V
Sbjct: 668 VEILDYMAARGCAPNAITYSSIV 690



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 175/357 (49%), Gaps = 32/357 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKA---KN 179
           G SP+V  F+ L+  LC  G++  A  V++      G+     ++  L+ G CKA   + 
Sbjct: 376 GCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRR 435

Query: 180 LDEGFR--LKSVMEGSGM----------------RPDVYTYSALINGLCKENRLDDAELL 221
           L++ F   L+     S                  RP + TY+ L+ GL K   + DA  L
Sbjct: 436 LEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGL 495

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L  M E GL+P+ + F +++DG CK  RI       +A  +       G  P+ +TY+ L
Sbjct: 496 LEFMIESGLSPDVITFNSVLDGLCKEQRI------LDAHNVFKRALERGCRPNVVTYSTL 549

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DG  K   ++ AL +  +M++ G   + V ++ ++ G  + G++ +A  +LR+M   G 
Sbjct: 550 IDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGC 609

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD  TY  +ID F K    +    LL+EM   G  P+V TY  L +GLC+ G+   A  
Sbjct: 610 LPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVE 669

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           +LD M   G  P+ ITY+ +++G CK G   +    F+K+  ++ +      Y++L+
Sbjct: 670 ILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALI 726



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 143/508 (28%), Positives = 228/508 (44%), Gaps = 84/508 (16%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV- 68
           Y+T+V+ L+      +A  LL  + +    G    L    L  +G    G +  A  +V 
Sbjct: 74  YNTLVNALLGQGRAKEAFSLLERMAAN---GCPPELITFGLIIKGLCKEGEIEAAFRVVD 130

Query: 69  -YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
             VD GF+ D       +  H   + A    C + R+           F+ ++L  G++P
Sbjct: 131 EMVDRGFVPD-------VEIHTVLLHAL---CELGRVDEAWF------FFQQVLLIGFTP 174

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
               +N ++  L K G+++ A MV     +     T  +F   ++G  KA NL   +   
Sbjct: 175 DAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFF 234

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDA----------------ELLLHEMCER--- 228
             M  +G+ P+  TY ALI+GLCK  +LD A                  LLH +C+    
Sbjct: 235 DSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRL 294

Query: 229 ----------GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
                        PN V F +L++G C+  R+D      EA ++ D M  +G + D ITY
Sbjct: 295 EEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVD------EAFELFDVMKESGCSADVITY 348

Query: 279 TILLDGFCKEGDLESALDIRKEMIKR--GIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            ILL G CK   +  A     E+++R  G   + V F+ LI G C  G+V +A  +   M
Sbjct: 349 NILLKGLCKLRRIPEAYR-HVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERM 407

Query: 337 LKV-GLKPDDATYTMVIDCFCKNGDTKTGFR-----LLKEMRSDG----HLPAVE----- 381
           + V G+ P+  TY  +++  CK GD++   +     L +E RS      H P V+     
Sbjct: 408 VAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQ 467

Query: 382 -------TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NP 431
                  TYN L+ GL K G +++A  LL+ M++ G+ PD IT+N +L+G CK     + 
Sbjct: 468 VCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDA 527

Query: 432 EDFDKLQSEKGLVSDYACYTSLVSKSSK 459
            +  K   E+G   +   Y++L+   SK
Sbjct: 528 HNVFKRALERGCRPNVVTYSTLIDGLSK 555



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 35/340 (10%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + + + +G+ P+V  ++ ++  LC++ ++     + +E   RG    AV++NTL+N    
Sbjct: 24  FRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLG 83

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
                E F L   M  +G  P++ T+  +I GLCKE  ++ A  ++ EM +RG  P+  I
Sbjct: 84  QGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEI 143

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            T L+   C+ GR+D      EA     ++   G  PD +TY  ++DG  K G LE+A  
Sbjct: 144 HTVLLHALCELGRVD------EAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGM 197

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + + + +         FT  + G  + G +  A      M + G+ P+  TY  +ID  C
Sbjct: 198 VLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLC 257

Query: 357 KNGDTKTGFRLLKEMRSDGHL-----------------------------PAVETYNALM 387
           K G       LL++  S   +                             P V  +N+LM
Sbjct: 258 KAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLM 317

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           NGLC+  ++  A  L D M + G   D ITYNILL+G CK
Sbjct: 318 NGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCK 357



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 190/406 (46%), Gaps = 65/406 (16%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHA------------ 162
           F+  +   G SP+   ++ L+  LCK GK+  A  ++ D+  + G+ A            
Sbjct: 233 FFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAH 292

Query: 163 ----------------TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
                             V FN+L+NG C+A+ +DE F L  VM+ SG   DV TY+ L+
Sbjct: 293 RLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILL 352

Query: 207 NGLCKENRLDDA----ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
            GLCK  R+ +A    EL+       G +PN V F+TLI G C  GR++ A ++ E    
Sbjct: 353 KGLCKLRRIPEAYRHVELMRR---TEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVA 409

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR-----------GIELDN- 310
           V+     G++P++ TY  LL+G CK GD        ++M++R             E+D  
Sbjct: 410 VE-----GISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFL 464

Query: 311 ---------VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
                    V +  L++G  + G V +A  +L  M++ GL PD  T+  V+D  CK    
Sbjct: 465 MVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRI 524

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                + K     G  P V TY+ L++GL K  ++  A  LL  M++LG   + +TY+ +
Sbjct: 525 LDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTV 584

Query: 422 LEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           ++G  K G  ED     +   + G + D   Y +L+    K ++ R
Sbjct: 585 VDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLR 630



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 11/332 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +NVL++ LCK G++ DA   F +  + G   T V+++T+I+G C+   +D+G +L   M 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
           G G  P+  TY+ L+N L  + R  +A  LL  M   G  P  + F  +I G CK G I+
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIE 123

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                  A ++VDEM   G  PD   +T+LL   C+ G ++ A    ++++  G   D V
Sbjct: 124 ------AAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAV 177

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  ++ G  + G++  A  +L+ + +    P   T+T+ +D   K G+    +     M
Sbjct: 178 TYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
              G  P   TY+AL++GLCK G+L  A  +L D     G+      ++ LL G C+   
Sbjct: 238 PQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGM----FAFSSLLHGLCQAHR 293

Query: 431 PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            E+  +L      V +  C+ SL++   + R+
Sbjct: 294 LEEAIQLLKAMPCVPNVVCFNSLMNGLCQARR 325



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 166/381 (43%), Gaps = 38/381 (9%)

Query: 92   IPARGC-------RCLIDRMMRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLMHKLCKEG 143
            + ARGC         ++D + +    T  LG++ ++  D   +P V  ++ L+  LCK G
Sbjct: 674  MAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAG 733

Query: 144  KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
            +I +A    +   + G     V+F+ LING C A  +D G  L   M   G + D+Y Y+
Sbjct: 734  RIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYN 793

Query: 204  ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM------- 256
            A+IN  C +     A  LL EM   G+  N V    +I   C N RID A          
Sbjct: 794  AMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED 853

Query: 257  --------------------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
                                ++A +++  M  +G +PD   Y  ++DG  K G  E A  
Sbjct: 854  CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAK 913

Query: 297  IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
            + +EM  RG   D   +T +ISG  +  ++  A     EML+  LKPD   Y+ +ID FC
Sbjct: 914  LLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFC 973

Query: 357  KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            K       ++LL   RS G  P +  Y+ +++ LCK+     A  ++  M      P   
Sbjct: 974  KADKVDDAWKLL---RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIH 1030

Query: 417  TYNILLEGHCKHGNPEDFDKL 437
             +  L   +   G  ++  KL
Sbjct: 1031 IWTSLATAYVAEGRVDEAVKL 1051



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/427 (21%), Positives = 169/427 (39%), Gaps = 71/427 (16%)

Query: 3    FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
            F  ++  Y+T+ H L       +A ++L  + ++ G   +A  ++SI++  G    G V 
Sbjct: 644  FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAAR-GCAPNAITYSSIVD--GLCKAGRVT 700

Query: 63   DAL---------------MIVYVDL-------GFLDDAIQCF-RLLRKHYFRIP-ARGCR 98
            +AL               +I Y  L       G +D+A +   R++R    RIP      
Sbjct: 701  EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAG--RIPDVVTFS 758

Query: 99   CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
             LI+ +         L  +  + + G    +Y +N +++  C +G+   A  + +E    
Sbjct: 759  ILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTH 818

Query: 159  GLHATAV---------------------------------SFNTLINGHCKAKNLDEGFR 185
            G+    V                                 S+NTLI     ++  ++   
Sbjct: 819  GIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALE 878

Query: 186  LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            L   M   G  PD   Y  +++GL K    + A  LL EM  RG +P+   +T +I G  
Sbjct: 879  LLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLS 938

Query: 246  KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            K  ++ +A D  E      EM    L PD I Y+ L+D FCK   ++ A  + +     G
Sbjct: 939  KAKQLPLACDYFE------EMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR---SSG 989

Query: 306  IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            IE     ++ ++   C+     +A  ++REM     +P    +T +   +   G      
Sbjct: 990  IEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAV 1049

Query: 366  RLLKEMR 372
            +L+ +++
Sbjct: 1050 KLVNDLQ 1056


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 207/446 (46%), Gaps = 56/446 (12%)

Query: 44  SLFASILETRG-THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           SLF  I+   G   LPG     L+ ++         + CF    K Y          +++
Sbjct: 130 SLFILIMRYYGKAGLPGQATRLLLDMW--------GVYCFEPTFKSY--------NVVLE 173

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
            ++  N P V    + ++L  G SP+VY F V+M   C   ++  A  +  +  K G   
Sbjct: 174 ILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVP 233

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE--- 219
            ++ +  LI+   +   ++E  +L   M   G  PDV T++ +I+GLCK  R+ +A    
Sbjct: 234 NSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLH 293

Query: 220 ----------------LLLHEMCERG------------LTPNDVIFTTLIDGHCKNGRID 251
                            L+H +C  G              PN V++ TLI+G+  +GR +
Sbjct: 294 DRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFE 353

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A D+     +   M   G  PD  T+ I++DG CK+G L SAL+   EM+K+G E + +
Sbjct: 354 EAKDL-----LYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVI 408

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LI GFC+ G   EA +++  M   GL  +   Y  +I   CK+G  +   ++  EM
Sbjct: 409 TYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEM 468

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            S G  P + T+N+L+ GLCK+ +++ A  L   ML  GV+ + +TYN L+    +    
Sbjct: 469 SSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELI 528

Query: 432 EDFDKLQSE---KGLVSDYACYTSLV 454
           +  DKL  E   +G   D   Y  L+
Sbjct: 529 QQADKLVGEMRFRGCPLDNITYNGLI 554



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/519 (26%), Positives = 232/519 (44%), Gaps = 83/519 (15%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F  T  +Y+ ++  LVA      A ++ + ++S+ G+  +   F            G+V+
Sbjct: 161 FEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSR-GISPTVYTF------------GVVM 207

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
            A  +V      +D A    R + KH     +   + LI  +   N     +    E+  
Sbjct: 208 KAFCMV----NEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFL 263

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA------------------ 164
            G  P V  FN ++H LCK G+I +A  + D    R   A A                  
Sbjct: 264 MGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDE 323

Query: 165 -------------VSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLC 210
                        V +NTLING+  +   +E   L    M  +G  PD +T++ +I+GLC
Sbjct: 324 ARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLC 383

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------------- 253
           K+  L  A   L EM ++G  PN + +T LIDG CK G  + A                 
Sbjct: 384 KKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTV 443

Query: 254 ------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
                       G +++A ++  EM + G  PD  T+  L+ G CK   +E AL + ++M
Sbjct: 444 GYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDM 503

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G+  + V +  LI  F R   + +A++++ EM   G   D+ TY  +I   CK G T
Sbjct: 504 LLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGAT 563

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L+++M  +   P++ + N L+N  C+ G++ +A   L  M+  G+ PD +TYN L
Sbjct: 564 EKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSL 623

Query: 422 LEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSK 456
           + G CK G  ++    F+ LQ+ KG+  D   Y +L+S+
Sbjct: 624 INGLCKMGRFQEALNLFNGLQA-KGIHPDAVTYNTLISR 661



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 176/345 (51%), Gaps = 7/345 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +       L F  E++  G+ P+V  + +L+   CK+G  ++A  V +    +G
Sbjct: 378 MIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKG 437

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V +N LI   CK   + +  ++   M   G +PD+YT+++LI GLCK +++++A 
Sbjct: 438 LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEAL 497

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M   G+  N V + TLI       R+++   +++A K+V EM   G   D ITY 
Sbjct: 498 GLYRDMLLEGVIANTVTYNTLIHAFL---RLEL---IQQADKLVGEMRFRGCPLDNITYN 551

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+   CK G  E  L + ++M    I     +   LI+ FCR GKV +A + LR+M++ 
Sbjct: 552 GLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQR 611

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL PD  TY  +I+  CK G  +    L   +++ G  P   TYN L++  C  G   +A
Sbjct: 612 GLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDA 671

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCK-HGNPEDFDKLQSEKGL 443
             LL   +  G +P++IT++IL+    K + + E F  L    G 
Sbjct: 672 CQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTILMGNWGF 716



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 175/378 (46%), Gaps = 25/378 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLH--LIVS-----------------KKGMGSSASLFASIL 50
           Y+T+++  V      +A+DLL+  ++++                 KKG   SA  F   +
Sbjct: 339 YNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEM 398

Query: 51  ETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
             +G     +    L+  +   G  ++A +    +      +   G  CLI  + +    
Sbjct: 399 VKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKI 458

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
              L  Y E+   G  P +Y FN L++ LCK  K+++A  ++ +    G+ A  V++NTL
Sbjct: 459 QDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTL 518

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+   + + + +  +L   M   G   D  TY+ LI  LCK    +    L+ +M    +
Sbjct: 519 IHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEI 578

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+      LI+  C+ G+++      +A + + +M   GL PD +TY  L++G CK G 
Sbjct: 579 FPSINSCNILINSFCRTGKVN------DALQFLRDMIQRGLTPDIVTYNSLINGLCKMGR 632

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
            + AL++   +  +GI  D V +  LIS +C  G   +A ++L + +  G  P++ T+++
Sbjct: 633 FQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSI 692

Query: 351 VIDCFCKNGDTKTGFRLL 368
           +I+ F KN      F +L
Sbjct: 693 LINYFVKNNSDSEQFTIL 710


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 203/423 (47%), Gaps = 58/423 (13%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           L  Y+++VH L   +   +A   L  +V+K+           +L    T+      + L+
Sbjct: 267 LVTYNSVVHALCKARAMDKAEAFLRQMVNKR-----------VLPNNWTY------NNLI 309

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y   G   +A++ F+ +R+H                               IL     
Sbjct: 310 YGYSSTGQWKEAVRVFKEMRRH------------------------------SIL----- 334

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   ++LM  LCK GKIK+A+ VFD    +G +    S+N ++NG+     L +   L
Sbjct: 335 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 394

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G+ PD YT++ LI        LD A ++ +EM + G+ P+ V + T+I   C+
Sbjct: 395 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 454

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+
Sbjct: 455 IGKMD------DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 508

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V F+++I+  C+ G+V++A+ +    + VGL PD   Y+M++D +C  G  +   R
Sbjct: 509 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALR 568

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M S G  P V  Y  L+NG CK G++     L   ML  G+ P  I Y+I+++G  
Sbjct: 569 VFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 628

Query: 427 KHG 429
           + G
Sbjct: 629 QAG 631



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 174/322 (54%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D+G  P V  +  ++  LC+ GK+ DA   F++   +G+     ++N LI G C   
Sbjct: 432 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 491

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L +   L S +  +GM  D+  +S++IN LCK  R+ DA+ +       GL P+ V+++
Sbjct: 492 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYS 551

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG+C      + G M++A ++ D M + G+ P+ + Y  L++G+CK G ++  L + 
Sbjct: 552 MLMDGYC------LVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 605

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM++RGI+   + ++ +I G  + G+ V A+    EM + G+  D  TY +V+    KN
Sbjct: 606 REMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKN 665

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L KE+R+      + T N +++G+ +  +++ A  L  ++    +VP+ +TY
Sbjct: 666 RCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTY 725

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
           +I++    K G  E+ + + S 
Sbjct: 726 SIMITNLIKEGLVEEAEDMFSS 747



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 174/343 (50%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL--HATAVSFNTLINGHCKAKN 179
           + G  P V+ +++L+  LC +GK   A  +     + G       V++NT+I+G  K  +
Sbjct: 188 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGD 247

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD+ TY+++++ LCK   +D AE  L +M  + + PN+  +  
Sbjct: 248 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 307

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM  + + PD +T ++L+   CK G ++ A D+  
Sbjct: 308 LIYGYSSTGQ------WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 361

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D  ++  +++G+   G +V+   +   ML  G+ PD  T+ ++I  +   G
Sbjct: 362 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCG 421

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GV PD   YN
Sbjct: 422 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 481

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L SE    G+  D   ++S+++   K
Sbjct: 482 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 524



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 8/303 (2%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R ++   + L+ G C+  R 
Sbjct: 116 GPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRT 175

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   ++ L+   C  G+   A D+         +C+    P+
Sbjct: 176 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS----PN 231

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  ++DGF KEGD+  A D+ KEM++RGI  D V + +++   C+   + +AE  LR
Sbjct: 232 VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLR 291

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+   + P++ TY  +I  +   G  K   R+ KEMR    LP V T + LM  LCK+G
Sbjct: 292 QMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 351

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
           ++K A  + DTM   G  PD  +YNI+L G+   G   +  D   L    G+  D+  + 
Sbjct: 352 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 411

Query: 452 SLV 454
            L+
Sbjct: 412 VLI 414



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ + + +LM    +  + + A   F +  + GL    +  N L+ G C+AK  DE   
Sbjct: 121 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 180

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++YS L+  LC + +   A+ LL  M E G   +PN V + T+ID
Sbjct: 181 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVID 240

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  K G ++ A D+        EM   G+ PD +TY  ++   CK   ++ A    ++M+
Sbjct: 241 GFFKEGDVNKACDL------FKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV 294

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            + +  +N  +  LI G+   G+  EA R+ +EM +  + PD  T +M++   CK G  K
Sbjct: 295 NKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK 354

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +YN ++NG    G L +   L D ML  G+ PD  T+N+L+
Sbjct: 355 EARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLI 414

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           + +   G  +     F++++ + G+  D   Y ++++
Sbjct: 415 KAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYRTVIA 450



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 163/358 (45%), Gaps = 6/358 (1%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            + L+  Y + G LD A+  F  +R H  +      R +I  + R       +  + +++
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G +P  Y +N L+   C  G +  A+ +  E    G+H   V F+++IN  CK   + 
Sbjct: 470 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 529

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   +  +    G+ PD   YS L++G C   +++ A  +   M   G+ PN V++ TL+
Sbjct: 530 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 589

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CK GRID      E   +  EM   G+ P  I Y+I++DG  + G    A     EM
Sbjct: 590 NGYCKIGRID------EGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEM 643

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + GI +D   +  ++ G  +     EA  + +E+  + +K +  T   +ID   +    
Sbjct: 644 TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRV 703

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +    L   +     +P V TY+ ++  L K G ++ A  +  +M + G  P+    N
Sbjct: 704 EEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLN 761



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 121/283 (42%), Gaps = 41/283 (14%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           ++ G  P   V+++LM   C  GK++ A  VFD     G+    V + TL+NG+CK   +
Sbjct: 539 VNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRI 598

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT--------- 231
           DEG  L   M   G++P    YS +I+GL +  R   A++  HEM E G+          
Sbjct: 599 DEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIV 658

Query: 232 --------------------------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
                                      N +   T+IDG  +  R++      EA+ +   
Sbjct: 659 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE------EAKDLFAS 712

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           +  + L P+ +TY+I++    KEG +E A D+   M   G E ++     ++    +  +
Sbjct: 713 ISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNE 772

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +V A   L ++ +     +  T  +++D F   G  +   R L
Sbjct: 773 IVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 815



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  +G +D+ +  FR + +   +        +ID + +          + E+ + G +  
Sbjct: 592 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMD 651

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N+++  L K     +A  +F E     +    ++ NT+I+G  + + ++E   L +
Sbjct: 652 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFA 711

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +  S + P+V TYS +I  L KE  +++AE +   M   G  PN  +   ++    K  
Sbjct: 712 SISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKN 771

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
            I  AG        +DE      + + +T  +L+D F  +G
Sbjct: 772 EIVRAGAYLSK---IDE---RNFSLEHLTAMLLVDLFSSKG 806


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 203/423 (47%), Gaps = 58/423 (13%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           L  Y+++VH L   +   +A   L  +V+K+           +L    T+      + L+
Sbjct: 254 LVTYNSVVHALCKARAMDKAEAFLRQMVNKR-----------VLPNNWTY------NNLI 296

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y   G   +A++ F+ +R+H                               IL     
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRH------------------------------SIL----- 321

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   ++LM  LCK GKIK+A+ VFD    +G +    S+N ++NG+     L +   L
Sbjct: 322 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 381

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G+ PD YT++ LI        LD A ++ +EM + G+ P+ V + T+I   C+
Sbjct: 382 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+
Sbjct: 442 IGKMD------DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 495

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V F+++I+  C+ G+V++A+ +    + VGL PD   Y+M++D +C  G  +   R
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALR 555

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M S G  P V  Y  L+NG CK G++     L   ML  G+ P  I Y+I+++G  
Sbjct: 556 VFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 615

Query: 427 KHG 429
           + G
Sbjct: 616 QAG 618



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 174/343 (50%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL--HATAVSFNTLINGHCKAKN 179
           + G  P V+ +++L+  LC +GK   A  +     + G       V++NT+I+G  K  +
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGD 234

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD+ TY+++++ LCK   +D AE  L +M  + + PN+  +  
Sbjct: 235 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 294

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM  + + PD +T ++L+   CK G ++ A D+  
Sbjct: 295 LIYGYSSTGQ------WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 348

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D  ++  +++G+   G +V+   +   ML  G+ PD  T+ ++I  +   G
Sbjct: 349 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCG 408

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GV PD   YN
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 468

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L SE    G+  D   ++S+++   K
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 173/322 (53%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D+G  P V  +  ++  LC+ GK+ DA   F++   +G+     ++N LI G C   
Sbjct: 419 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 478

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L +   L S +  +GM  D+  +S++IN LCK  R+ DA+ +       GL P+ V+++
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYS 538

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG+C      + G M++A ++ D M + G+ P+ + Y  L++G+CK G ++  L + 
Sbjct: 539 MLMDGYC------LVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM++RGI+   + ++ +I G  + G+ V A+    EM + G+  D  TY +V+    KN
Sbjct: 593 REMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKN 652

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L KE+R+      + T N +++G+ +  +++ A  L  ++    +VP  +TY
Sbjct: 653 RCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTY 712

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
           +I++    K G  E+ + + S 
Sbjct: 713 SIMITNLIKEGLVEEAEDMFSS 734



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 8/303 (2%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R ++   + L+ G C+  R 
Sbjct: 103 GPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRT 162

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   ++ L+   C  G+   A D+         +C+    P+
Sbjct: 163 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS----PN 218

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  ++DGF KEGD+  A D+ KEM++RGI  D V + +++   C+   + +AE  LR
Sbjct: 219 VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLR 278

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+   + P++ TY  +I  +   G  K   R+ KEMR    LP V T + LM  LCK+G
Sbjct: 279 QMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 338

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
           ++K A  + DTM   G  PD  +YNI+L G+   G   +  D   L    G+  D+  + 
Sbjct: 339 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 398

Query: 452 SLV 454
            L+
Sbjct: 399 VLI 401



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ + + +LM    +  + + A   F +  + GL    +  N L+ G C+AK  DE   
Sbjct: 108 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 167

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++YS L+  LC + +   A+ LL  M E G   +PN V + T+ID
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVID 227

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  K G ++ A D+        EM   G+ PD +TY  ++   CK   ++ A    ++M+
Sbjct: 228 GFFKEGDVNKACDL------FKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV 281

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            + +  +N  +  LI G+   G+  EA R+ +EM +  + PD  T +M++   CK G  K
Sbjct: 282 NKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK 341

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +YN ++NG    G L +   L D ML  G+ PD  T+N+L+
Sbjct: 342 EARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLI 401

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           + +   G  +     F++++ + G+  D   Y ++++
Sbjct: 402 KAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYRTVIA 437



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 164/358 (45%), Gaps = 6/358 (1%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            + L+  Y + G LD A+  F  +R H  +      R +I  + R       +  + +++
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G +P  Y +N L+   C  G +  A+ +  E    G+H   V F+++IN  CK   + 
Sbjct: 457 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 516

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   +  +    G+ PD   YS L++G C   +++ A  +   M   G+ PN V++ TL+
Sbjct: 517 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 576

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CK GRID      E   +  EM   G+ P  I Y+I++DG  + G    A     EM
Sbjct: 577 NGYCKIGRID------EGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEM 630

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + GI +D   +  ++ G  +     EA  + +E+  + +K +  T   +ID   +    
Sbjct: 631 TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRV 690

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +    L   +     +P+V TY+ ++  L K G ++ A  +  +M + G  P+    N
Sbjct: 691 EEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLN 748



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 120/283 (42%), Gaps = 41/283 (14%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           ++ G  P   V+++LM   C  GK++ A  VFD     G+    V + TL+NG+CK   +
Sbjct: 526 VNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRI 585

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT--------- 231
           DEG  L   M   G++P    YS +I+GL +  R   A++  HEM E G+          
Sbjct: 586 DEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIV 645

Query: 232 --------------------------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
                                      N +   T+IDG  +  R++      EA+ +   
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE------EAKDLFAS 699

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           +  + L P  +TY+I++    KEG +E A D+   M   G E ++     ++    +  +
Sbjct: 700 ISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNE 759

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +V A   L ++ +     +  T  +++D F   G  +   R L
Sbjct: 760 IVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCREHIRFL 802



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  +G +D+ +  FR + +   +        +ID + +          + E+ + G +  
Sbjct: 579 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMD 638

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N+++  L K     +A  +F E     +    ++ NT+I+G  + + ++E   L +
Sbjct: 639 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFA 698

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +  S + P V TYS +I  L KE  +++AE +   M   G  PN  +   ++    K  
Sbjct: 699 SISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKN 758

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
            I  AG        +DE      + + +T  +L+D F  +G
Sbjct: 759 EIVRAGAYLSK---IDE---RNFSLEHLTTMLLVDLFSSKG 793


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 170/340 (50%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  G+ P    F  L+  LC EGKI +A  +FD+    G     V++ TLING CK +
Sbjct: 105 KILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDR 164

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E F + S M   G+ P++ TY++LI+GLCK         L++EM +  + P+     
Sbjct: 165 QVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLN 224

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T++D  CK G +       EA  +VD M   G+ P+ +TY  L+DG C   +++ A+ + 
Sbjct: 225 TVVDALCKEGMV------AEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVF 278

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+ +    + +++  LI+G+C+   V +A  +  EM +  L P+  TY  +I   C  
Sbjct: 279 DTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHV 338

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    L  EM + G +P + TY  L + LCK+  L  A  LL  +      PD   Y
Sbjct: 339 GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 398

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             +L+G C+ G  ED    F  L S KGL  +   Y  ++
Sbjct: 399 TTILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMI 437



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 192/419 (45%), Gaps = 44/419 (10%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LDDA+  F R+L  H         + L       +  TV L    ++  +G  P VY  N
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTV-LSLSTQMDSFGIPPDVYTLN 620

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++  C   ++  A  V  +  K G     V++ TL+NG CK             M   
Sbjct: 621 ILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK-------------MITK 667

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+ PD++TY++LI+ LC          LL+EM    + PN V+F+T++D  CK G I +A
Sbjct: 668 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIA 727

Query: 254 GD-----------------------------MKEARKIVDEMCTNGLNPDKITYTILLDG 284
            D                             M EA K+ D M   G  P+  +Y IL++G
Sbjct: 728 HDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILING 787

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           +C+   ++ A+ + ++M  +G+  D V +  LI G C  G++  A  +  EM+  G  PD
Sbjct: 788 YCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD 847

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY +++D  CKN        LLK +        +  YN  ++G+C+ G+L+ A  L  
Sbjct: 848 LVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFS 907

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQK 463
            +   G+ PD  TYNI++ G CK G  ++ +KL  +      ++  TS  ++ S   QK
Sbjct: 908 NLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTSSRNQKSLIYQK 966



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 144/280 (51%), Gaps = 6/280 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N LM   C   ++  A  VFD    +   A  +S+NTLING+CK +++D+ 
Sbjct: 250 GVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKA 309

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M    + P+  TY+ LI+GLC   RL DA  L HEM  RG  P+ V + TL D 
Sbjct: 310 MYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 369

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN  +D A  + +A +       +  +PD   YT +LDG C+ G+LE A D+   +  
Sbjct: 370 LCKNRHLDKAMALLKAIE------GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS 423

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++ +   +  +I G C+ G + EA ++  EM K G  P+D TY ++   F +N +   
Sbjct: 424 KGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALR 483

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              LL+EM + G    V T   L+  L   G  ++   +L
Sbjct: 484 TIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 523



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 6/283 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + +A   F+    +    + V FN L+    K K+      L   M+  G+ PDVYT + 
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           +IN LC  NR+D A   L ++ + G  P+   FTTLI G C  G+I       EA  + D
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIG------EALHLFD 139

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G  P+ +TY  L++G CK+  +  A +I  EMI +GI  + V + +LI G C+  
Sbjct: 140 KMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLC 199

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +      ++ EM+   + PD  T   V+D  CK G       ++  M   G  P V TYN
Sbjct: 200 EWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 259

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           ALM+G C   ++  A  + DTM+    V + I+YN L+ G+CK
Sbjct: 260 ALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 302


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 181/350 (51%), Gaps = 13/350 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + + L+ G+       N L+H LC+ GK+ +A  +  E   RG     VS+NTLI+
Sbjct: 489 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 548

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C  K LDE F     M   G++PD YTYS LI GL   N++++A     +    G+ P
Sbjct: 549 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLP 608

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   ++ +IDG CK  R +      E ++  DEM +  + P+ + Y  L+  +C+ G L 
Sbjct: 609 DVYTYSVMIDGCCKAERTE------EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLS 662

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            AL++R++M  +GI  ++  +T+LI G     +V EA+ +  EM   GL+P+   YT +I
Sbjct: 663 MALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 722

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D + K G       LL+EM S    P   TY  ++ G  + G +  A+ LL+ M + G+V
Sbjct: 723 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 782

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           PD ITY   + G+ K G       L++ KG  SD   Y +++   +K  Q
Sbjct: 783 PDSITYKEFIYGYLKQGGV-----LEAFKG--SDEENYAAIIEGWNKLIQ 825



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 170/334 (50%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY+F   ++  CK GK+++A  +F +  + G+    V+FNT+I+G       DE 
Sbjct: 255 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 314

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K  M   GM P + TYS L+ GL +  R+ DA  +L EM ++G  PN +++  LID 
Sbjct: 315 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 374

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +      AG + +A +I D M + GL+    TY  L+ G+CK G  ++A  + KEM+ 
Sbjct: 375 FIE------AGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 428

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G  ++  +FT++I   C       A R + EML   + P     T +I   CK+G    
Sbjct: 429 IGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSK 488

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +  + G +    T NAL++GLC+ G+L  A  +   +L  G V D ++YN L+ 
Sbjct: 489 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 548

Query: 424 GHC-KHGNPEDFDKLQS--EKGLVSDYACYTSLV 454
           G C K    E F  L    ++GL  D   Y+ L+
Sbjct: 549 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 582



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 176/345 (51%), Gaps = 9/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F  E+L    SP   +   L+  LCK GK   A  ++ +F  +G      + N L++
Sbjct: 454 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLH 513

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+A  LDE FR++  + G G   D  +Y+ LI+G C + +LD+A + L EM +RGL P
Sbjct: 514 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 573

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           ++  ++ LI G     +++      EA +  D+   NG+ PD  TY++++DG CK    E
Sbjct: 574 DNYTYSILICGLFNMNKVE------EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 627

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
              +   EM+ + ++ + V +  LI  +CR G++  A  +  +M   G+ P+ ATYT +I
Sbjct: 628 EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 687

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
                    +    L +EMR +G  P V  Y AL++G  K GQ+     LL  M    V 
Sbjct: 688 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 747

Query: 413 PDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           P+ ITY +++ G+ + GN  +  +L     EKG+V D   Y   +
Sbjct: 748 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 792



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 170/335 (50%), Gaps = 10/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PS    N+L+  L +  + +     FD   K G+      F T IN  CK   ++E 
Sbjct: 221 GMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEA 279

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L S ME +G+ P+V T++ +I+GL    R D+A +   +M ERG+ P  + ++ L+ G
Sbjct: 280 VKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG 339

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +  RI   GD   A  ++ EM   G  P+ I Y  L+D F + G L  A++I+  M+ 
Sbjct: 340 LTRAKRI---GD---AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 393

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+ L +  +  LI G+C+ G+   AER+L+EML +G   +  ++T VI   C +    +
Sbjct: 394 KGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDS 453

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R + EM      P       L++GLCKHG+   A  L    L+ G V D  T N LL 
Sbjct: 454 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLH 513

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G C+ G  ++  ++Q E   +G V D   Y +L+S
Sbjct: 514 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 548


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 181/350 (51%), Gaps = 13/350 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + + L+ G+       N L+H LC+ GK+ +A  +  E   RG     VS+NTLI+
Sbjct: 478 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 537

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C  K LDE F     M   G++PD YTYS LI GL   N++++A     +    G+ P
Sbjct: 538 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLP 597

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   ++ +IDG CK  R +      E ++  DEM +  + P+ + Y  L+  +C+ G L 
Sbjct: 598 DVYTYSVMIDGCCKAERTE------EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLS 651

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            AL++R++M  +GI  ++  +T+LI G     +V EA+ +  EM   GL+P+   YT +I
Sbjct: 652 MALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 711

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D + K G       LL+EM S    P   TY  ++ G  + G +  A+ LL+ M + G+V
Sbjct: 712 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 771

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           PD ITY   + G+ K G       L++ KG  SD   Y +++   +K  Q
Sbjct: 772 PDSITYKEFIYGYLKQGGV-----LEAFKG--SDEENYAAIIEGWNKLIQ 814



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 170/334 (50%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY+F   ++  CK GK+++A  +F +  + G+    V+FNT+I+G       DE 
Sbjct: 244 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 303

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K  M   GM P + TYS L+ GL +  R+ DA  +L EM ++G  PN +++  LID 
Sbjct: 304 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 363

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +      AG + +A +I D M + GL+    TY  L+ G+CK G  ++A  + KEM+ 
Sbjct: 364 FIE------AGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 417

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G  ++  +FT++I   C       A R + EML   + P     T +I   CK+G    
Sbjct: 418 IGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSK 477

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +  + G +    T NAL++GLC+ G+L  A  +   +L  G V D ++YN L+ 
Sbjct: 478 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 537

Query: 424 GHC-KHGNPEDFDKLQS--EKGLVSDYACYTSLV 454
           G C K    E F  L    ++GL  D   Y+ L+
Sbjct: 538 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 571



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 176/345 (51%), Gaps = 9/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F  E+L    SP   +   L+  LCK GK   A  ++ +F  +G      + N L++
Sbjct: 443 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLH 502

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+A  LDE FR++  + G G   D  +Y+ LI+G C + +LD+A + L EM +RGL P
Sbjct: 503 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 562

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           ++  ++ LI G     +++      EA +  D+   NG+ PD  TY++++DG CK    E
Sbjct: 563 DNYTYSILICGLFNMNKVE------EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 616

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
              +   EM+ + ++ + V +  LI  +CR G++  A  +  +M   G+ P+ ATYT +I
Sbjct: 617 EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 676

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
                    +    L +EMR +G  P V  Y AL++G  K GQ+     LL  M    V 
Sbjct: 677 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 736

Query: 413 PDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           P+ ITY +++ G+ + GN  +  +L     EKG+V D   Y   +
Sbjct: 737 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 781



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 170/335 (50%), Gaps = 10/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PS    N+L+  L +  + +     FD   K G+      F T IN  CK   ++E 
Sbjct: 210 GMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEA 268

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L S ME +G+ P+V T++ +I+GL    R D+A +   +M ERG+ P  + ++ L+ G
Sbjct: 269 VKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG 328

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +  RI   GD   A  ++ EM   G  P+ I Y  L+D F + G L  A++I+  M+ 
Sbjct: 329 LTRAKRI---GD---AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 382

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+ L +  +  LI G+C+ G+   AER+L+EML +G   +  ++T VI   C +    +
Sbjct: 383 KGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDS 442

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R + EM      P       L++GLCKHG+   A  L    L+ G V D  T N LL 
Sbjct: 443 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLH 502

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G C+ G  ++  ++Q E   +G V D   Y +L+S
Sbjct: 503 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 537


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 181/350 (51%), Gaps = 13/350 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + + L+ G+       N L+H LC+ GK+ +A  +  E   RG     VS+NTLI+
Sbjct: 502 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 561

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C  K LDE F     M   G++PD YTYS LI GL   N++++A     +    G+ P
Sbjct: 562 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLP 621

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   ++ +IDG CK  R +      E ++  DEM +  + P+ + Y  L+  +C+ G L 
Sbjct: 622 DVYTYSVMIDGCCKAERTE------EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLS 675

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            AL++R++M  +GI  ++  +T+LI G     +V EA+ +  EM   GL+P+   YT +I
Sbjct: 676 MALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 735

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D + K G       LL+EM S    P   TY  ++ G  + G +  A+ LL+ M + G+V
Sbjct: 736 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 795

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           PD ITY   + G+ K G       L++ KG  SD   Y +++   +K  Q
Sbjct: 796 PDSITYKEFIYGYLKQGGV-----LEAFKG--SDEENYAAIIEGWNKLIQ 838



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 170/334 (50%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP VY+F   ++  CK GK+++A  +F +  + G+    V+FNT+I+G       DE 
Sbjct: 268 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 327

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F  K  M   GM P + TYS L+ GL +  R+ DA  +L EM ++G  PN +++  LID 
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 387

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +      AG + +A +I D M + GL+    TY  L+ G+CK G  ++A  + KEM+ 
Sbjct: 388 FIE------AGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 441

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G  ++  +FT++I   C       A R + EML   + P     T +I   CK+G    
Sbjct: 442 IGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSK 501

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  +  + G +    T NAL++GLC+ G+L  A  +   +L  G V D ++YN L+ 
Sbjct: 502 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 561

Query: 424 GHC-KHGNPEDFDKLQS--EKGLVSDYACYTSLV 454
           G C K    E F  L    ++GL  D   Y+ L+
Sbjct: 562 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 595



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 176/345 (51%), Gaps = 9/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F  E+L    SP   +   L+  LCK GK   A  ++ +F  +G      + N L++
Sbjct: 467 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLH 526

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+A  LDE FR++  + G G   D  +Y+ LI+G C + +LD+A + L EM +RGL P
Sbjct: 527 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 586

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           ++  ++ LI G     +++      EA +  D+   NG+ PD  TY++++DG CK    E
Sbjct: 587 DNYTYSILICGLFNMNKVE------EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 640

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
              +   EM+ + ++ + V +  LI  +CR G++  A  +  +M   G+ P+ ATYT +I
Sbjct: 641 EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
                    +    L +EMR +G  P V  Y AL++G  K GQ+     LL  M    V 
Sbjct: 701 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 760

Query: 413 PDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           P+ ITY +++ G+ + GN  +  +L     EKG+V D   Y   +
Sbjct: 761 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 805



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 170/335 (50%), Gaps = 10/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PS    N+L+  L +  + +     FD   K G+      F T IN  CK   ++E 
Sbjct: 234 GMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEA 292

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L S ME +G+ P+V T++ +I+GL    R D+A +   +M ERG+ P  + ++ L+ G
Sbjct: 293 VKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG 352

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             +  RI   GD   A  ++ EM   G  P+ I Y  L+D F + G L  A++I+  M+ 
Sbjct: 353 LTRAKRI---GD---AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 406

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G+ L +  +  LI G+C+ G+   AER+L+EML +G   +  ++T VI   C +    +
Sbjct: 407 KGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDS 466

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             R + EM      P       L++GLCKHG+   A  L    L+ G V D  T N LL 
Sbjct: 467 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLH 526

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           G C+ G  ++  ++Q E   +G V D   Y +L+S
Sbjct: 527 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 561


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 175/335 (52%), Gaps = 15/335 (4%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +T GF +  +IL  GY PS    N L+  LC +G++K A    D+   +G     V + T
Sbjct: 109 ITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGT 168

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CK  +     +L   ++G   +PDV  YS +I+ LCK   + +A  L  EM  +G
Sbjct: 169 LINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKG 228

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++ + V + TLI G C      + G +KEA  +++ M    +NPD  TYTIL+D  CKEG
Sbjct: 229 ISADVVTYNTLIYGFC------IVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEG 282

Query: 290 DLESA-------LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            ++ A        D+  EM  RG   D + +++LI G C+ G +  A  +  +M   G++
Sbjct: 283 KVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIR 342

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  T+T+++D   K G  K    + +++ + G+   V TYN ++NG CK G L+ A  +
Sbjct: 343 PNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTM 402

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           L  M D G +P+  T+  ++    K    +  +KL
Sbjct: 403 LSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKL 437



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 176/367 (47%), Gaps = 16/367 (4%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR-TNLPTVTLGFYLEILDYGYSPSVYVFN 133
           +DDA+  F  +       P      ++D   +  +  TV+L   LE+   G  P ++  N
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTVSLSHRLEL--KGIQPDLFTLN 97

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++  C  G+I     V  +  KRG   + V+ NTLI G C    + +       +   
Sbjct: 98  ILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 157

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G + +   Y  LING+CK      A  LL ++  R   P+ V+++T+ID  CK   +   
Sbjct: 158 GFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVS-- 215

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA  +  EM   G++ D +TY  L+ GFC  G L+ A+ +   M+ + I  D   +
Sbjct: 216 ----EAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTY 271

Query: 314 TALISGFCRGGKVVEAER-------MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           T L+   C+ GKV EA+R       ++ EM   G   D  TY+ +ID  CKNG       
Sbjct: 272 TILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIA 331

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  +M+  G  P + T+  L++GL K G+LK+A  +   +L  G   +  TYN+++ GHC
Sbjct: 332 LFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHC 391

Query: 427 KHGNPED 433
           K G  E+
Sbjct: 392 KQGLLEE 398



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 124/268 (46%), Gaps = 17/268 (6%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P +  ++ +++   K        L  H +  +G+ P+      LI+  C  G+I      
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTVSLS-HRLELKGIQPDLFTLNILINCFCHMGQITFGFS- 114

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                ++ ++   G  P  +T   L+ G C +G ++ AL    +++ +G +L+ V +  L
Sbjct: 115 -----VLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTL 169

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G C+ G    A ++L+++     KPD   Y+ +ID  CK       + L  EM   G 
Sbjct: 170 INGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGI 229

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
              V TYN L+ G C  G+LK A  LL+ M+   + PD  TY IL++  CK G  ++  +
Sbjct: 230 SADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKR 289

Query: 437 LQS----------EKGLVSDYACYTSLV 454
             S          ++G  +D   Y+SL+
Sbjct: 290 RISYVWDLIDEMRDRGQPADVITYSSLI 317



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + +       +  + ++ D G  P+++ F +L+  L K G++KDAQ VF +   +G
Sbjct: 316 LIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKG 375

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            H    ++N +INGHCK   L+E   + S ME +G  P+ +T+  +I  L K++  D AE
Sbjct: 376 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAE 435

Query: 220 LLLHEMCERGL 230
            LL +M  RGL
Sbjct: 436 KLLRQMIARGL 446


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 202/423 (47%), Gaps = 58/423 (13%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           L  Y+++VH L   +   +A   L  +V+K+           +L    T+      + L+
Sbjct: 257 LVTYNSVVHALCKARAMDKAEAFLRQMVNKR-----------VLPNNWTY------NNLI 299

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y   G   +A++ F+ +R+H                               IL     
Sbjct: 300 YGYSSTGQWKEAVRVFKEMRRH------------------------------SIL----- 324

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   ++LM  LCK GKIK+A+ VFD    +G +    S+N ++NG+     L +   L
Sbjct: 325 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 384

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G+ PD YT++ LI        LD A ++ +EM + G+ P+ V + T+I   C+
Sbjct: 385 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 444

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+
Sbjct: 445 IGKMD------DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 498

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V F+++I+  C+ G+V++A+ +    + VGL PD   Y M++D +C  G  +   R
Sbjct: 499 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 558

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M S G  P V  Y  L+NG CK G++     L   ML  G+ P  I Y+I+++G  
Sbjct: 559 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 618

Query: 427 KHG 429
           + G
Sbjct: 619 EAG 621



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 174/343 (50%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL--HATAVSFNTLINGHCKAKN 179
           + G  P V+ +++L+  LC +GK   A  +     + G       V++NT+I+G  K  +
Sbjct: 178 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGD 237

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD+ TY+++++ LCK   +D AE  L +M  + + PN+  +  
Sbjct: 238 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 297

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM  + + PD +T ++L+   CK G ++ A D+  
Sbjct: 298 LIYGYSSTGQ------WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 351

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D  ++  +++G+   G +V+   +   ML  G+ PD  T+ ++I  +   G
Sbjct: 352 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCG 411

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GV PD   YN
Sbjct: 412 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 471

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L SE    G+  D   ++S+++   K
Sbjct: 472 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 514



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 171/322 (53%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D+G  P V  +  ++  LC+ GK+ DA   F++   +G+     ++N LI G C   
Sbjct: 422 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 481

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L +   L S +  +GM  D+  +S++IN LCK  R+ DA+ +       GL P+ V++ 
Sbjct: 482 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYN 541

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG+C      + G M++A ++ D M + G+ P+ + Y  L++G+CK G ++  L + 
Sbjct: 542 MLMDGYC------LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 595

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM++RGI+   + ++ +I G    G+ V A+    EM + G+  D  TY +V+    KN
Sbjct: 596 REMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKN 655

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L KE+R+      + T N +++G+ +  +++ A  L  ++    +VP  +TY
Sbjct: 656 RCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTY 715

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
           +I++    K G  E+ + + S 
Sbjct: 716 SIMITNLIKEGLVEEAEDMFSS 737



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 8/303 (2%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R ++   + L+ G C+  R 
Sbjct: 106 GPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRT 165

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   ++ L+   C  G+   A D+         +C+    P+
Sbjct: 166 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS----PN 221

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  ++DGF KEGD+  A D+ KEM++RGI  D V + +++   C+   + +AE  LR
Sbjct: 222 VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLR 281

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+   + P++ TY  +I  +   G  K   R+ KEMR    LP V T + LM  LCK+G
Sbjct: 282 QMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 341

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
           ++K A  + DTM   G  PD  +YNI+L G+   G   +  D   L    G+  D+  + 
Sbjct: 342 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 401

Query: 452 SLV 454
            L+
Sbjct: 402 VLI 404



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ + + +LM    +  + + A   F +  + GL    +  N L+ G C+AK  DE   
Sbjct: 111 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 170

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++YS L+  LC + +   A+ LL  M E G   +PN V + T+ID
Sbjct: 171 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVID 230

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  K G ++ A D+        EM   G+ PD +TY  ++   CK   ++ A    ++M+
Sbjct: 231 GFFKEGDVNKACDL------FKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV 284

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            + +  +N  +  LI G+   G+  EA R+ +EM +  + PD  T +M++   CK G  K
Sbjct: 285 NKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK 344

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +YN ++NG    G L +   L D ML  G+ PD  T+N+L+
Sbjct: 345 EARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLI 404

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           + +   G  +     F++++ + G+  D   Y ++++
Sbjct: 405 KAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYRTVIA 440



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 163/358 (45%), Gaps = 6/358 (1%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            + L+  Y + G LD A+  F  +R H  +      R +I  + R       +  + +++
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G +P  Y +N L+   C  G +  A+ +  E    G+H   V F+++IN  CK   + 
Sbjct: 460 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 519

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   +  +    G+ PD   Y+ L++G C   +++ A  +   M   G+ PN V + TL+
Sbjct: 520 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 579

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CK GRID      E   +  EM   G+ P  I Y+I++DG  + G    A     EM
Sbjct: 580 NGYCKIGRID------EGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEM 633

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + GI +D   +  ++ G  +     EA  + +E+  + +K +  T   +ID   +    
Sbjct: 634 TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRV 693

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +    L   +     +P+V TY+ ++  L K G ++ A  +  +M + G  P+    N
Sbjct: 694 EEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLN 751



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 41/283 (14%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           ++ G  P   V+N+LM   C  GK++ A  VFD     G+    V + TL+NG+CK   +
Sbjct: 529 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI 588

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT--------- 231
           DEG  L   M   G++P    YS +I+GL +  R   A++  HEM E G+          
Sbjct: 589 DEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIV 648

Query: 232 --------------------------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
                                      N +   T+IDG  +  R++      EA+ +   
Sbjct: 649 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE------EAKDLFAS 702

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           +  + L P  +TY+I++    KEG +E A D+   M   G E ++     ++    +  +
Sbjct: 703 ISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNE 762

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +V A   L ++ +     +  T  +++D F   G  +   R L
Sbjct: 763 IVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 805



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  +G +D+ +  FR + +   +        +ID +            + E+ + G +  
Sbjct: 582 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD 641

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N+++  L K     +A  +F E     +    ++ NT+I+G  + + ++E   L +
Sbjct: 642 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFA 701

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            +  S + P V TYS +I  L KE  +++AE +   M   G  PN  +   ++    K  
Sbjct: 702 SISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKN 761

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
            I  AG        +DE      + + +T  +L+D F  +G
Sbjct: 762 EIVRAGAYLSK---IDE---RNFSLEHLTAMLLVDLFSSKG 796


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 180/332 (54%), Gaps = 15/332 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P   + N L+  LC+ G+  DA+ V    G  G  AT V++  L +G+C+A  L +  R
Sbjct: 100 PPDAALANRLVRDLCRRGRPDDAERVV---GACGPAATVVAYGALTDGYCRAGRLGDARR 156

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              V+ G  ++P+ YTY+ LI+ LC+  ++ DA  +L +M  RG  P+ V +  L++  C
Sbjct: 157 ---VVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATC 213

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K GR       ++A +++D M   G  P+ +TY +L+DG C EGD++ AL++ + +   G
Sbjct: 214 K-GR-----GYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHG 267

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            +   V +  ++ G C   +  +A+ ++ EML+    P++AT+ +VI   C+ G  +   
Sbjct: 268 CKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAI 327

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +LL++M   G    + TYNA++NGLC+   +  A  LL  M   G  PD +TYN LL+G 
Sbjct: 328 QLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGL 387

Query: 426 CKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           C      D ++L    ++ G + D   + +L+
Sbjct: 388 CSAAQWVDAEELMDNMTQNGCLPDNVTFNTLI 419



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 6/302 (1%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+ Y +N L+H LC+ G+++DA  V D+   RG     V++N L+   CK +   +   
Sbjct: 164 QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 223

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L  +M   G  P+  TY+ L++G+C E  +DDA  LL  +   G  P+ V + T++ G C
Sbjct: 224 LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLC 283

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
              R    GD  E   +V EM      P++ T+ +++   C++G L+ A+ + ++M K G
Sbjct: 284 SAERW---GDADE---LVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG 337

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              + V + A+I+G C    V  A  +L +M   G KPD  TY  ++   C         
Sbjct: 338 CTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAE 397

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L+  M  +G LP   T+N L+  LC+ G + +A  +   M D G  P+ ITY+ ++ G 
Sbjct: 398 ELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGL 457

Query: 426 CK 427
            K
Sbjct: 458 AK 459



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  PS   +N ++  LC   +  DA  +  E  +        +FN +I   C+   L +
Sbjct: 266 HGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQ 325

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +L   M   G   ++ TY+A+INGLC++  +D A  LL +M   G  P+ V + TL+ 
Sbjct: 326 AIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 385

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C       A    +A +++D M  NG  PD +T+  L+   C++G +  A+++ K+M 
Sbjct: 386 GLCS------AAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMP 439

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G   +++ ++ +ISG  +  K+ +A  +  EM   G  PD   Y ++ +C   +   +
Sbjct: 440 DKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK-IYQLLAECLNDDDTIE 498

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              + +++++  G  P    YNA++ GLC++G+ + A  ++  M+  G +PDD+TY IL+
Sbjct: 499 EAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILI 558

Query: 423 EGHCKHG 429
           EG    G
Sbjct: 559 EGLAYEG 565



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 164/343 (47%), Gaps = 31/343 (9%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF------------YLEI 120
           G +DDA++  R        +P+ GC+         N  TV  G               E+
Sbjct: 251 GDVDDALELLR-------NLPSHGCK-----PSTVNYNTVLKGLCSAERWGDADELVTEM 298

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L     P+   FNV+++ LC++G ++ A  + ++  K G  A  V++N +ING C+ +N+
Sbjct: 299 LRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNV 358

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D    L S M+  G +PD+ TY+ L+ GLC   +  DAE L+  M + G  P++V F TL
Sbjct: 359 DGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTL 418

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I   C+ G       M +A ++  +M   G  P+ ITY+ ++ G  K   L+ AL++  E
Sbjct: 419 IGFLCQKGL------MVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNE 472

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M  +G   D + +  L         + EA + +R++   G+ P    Y  ++   C+NG 
Sbjct: 473 MGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK 531

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           T+    ++  M S G +P   TY  L+ GL   G L  A  LL
Sbjct: 532 TEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 574



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 40/273 (14%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L  AIQ    + KH           +I+ +         +G   ++  YG  P +  +
Sbjct: 321 GLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTY 380

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N L+  LC   +  DA+ + D   + G     V+FNTLI   C+   + +   +   M  
Sbjct: 381 NTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPD 440

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG----------------------- 229
            G  P+  TYS +I+GL K  +LD A  L +EM  +G                       
Sbjct: 441 KGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEA 500

Query: 230 -----------LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
                      ++P+ V++  ++ G C+NG+ + A D      I+  M ++G  PD +TY
Sbjct: 501 IQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAID------IMAYMVSSGCMPDDLTY 554

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            IL++G   EG L  A ++  ++  R + ++++
Sbjct: 555 VILIEGLAYEGYLNEARELLIKLCSRDVLVNSL 587



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 20/176 (11%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           G + DAI+ F+       ++P +GC         +I  + +       L  + E+   G+
Sbjct: 426 GLMVDAIEVFK-------QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGF 478

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P   ++ +L   L  +  I++A     +    G+    V +N ++ G C+    +    
Sbjct: 479 NPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAID 537

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           + + M  SG  PD  TY  LI GL  E  L++A  LL ++C R     DV+  +LI
Sbjct: 538 IMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSR-----DVLVNSLI 588


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 183/387 (47%), Gaps = 15/387 (3%)

Query: 70  VDLGFLDDAIQCF-RLLRKHYFRIPAR--GCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
           +++  +DDA+  F R+LR    R P        L+  + R    +  L  Y ++  +G  
Sbjct: 30  LNVNTIDDALSLFNRMLR---MRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIP 86

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            + Y  N+L++  C   ++  A  V  +  K G   +  +F TLI G C    + E  +L
Sbjct: 87  HNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQL 146

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M G G +PDV TY  LINGLCK      A   L  M +R   P  V+++T+ID  CK
Sbjct: 147 FDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + +      + EA  +  +M   G++P+  TY+ L+ G C  G  + A+ +   MI R I
Sbjct: 207 DRQ------LTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKI 260

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D + F  L+   C+ G VV+A  ++  M++  LKPD  TY  ++D  C   +      
Sbjct: 261 MPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVN 320

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M   G +P+V +Y  L+NG CK   +  A  L + M   G++PD +TYN L+ G C
Sbjct: 321 VFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLC 380

Query: 427 KHGNPEDFDKLQSEK---GLVSDYACY 450
             G   D   L  E    G + D   Y
Sbjct: 381 HVGRLRDAIALFHEMVVYGQIPDLVTY 407



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 180/404 (44%), Gaps = 66/404 (16%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY PS   F  L+  LC EGKI +A  +FD+    G     +++ TLING CK  
Sbjct: 114 DILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVG 173

Query: 179 N-----------------------------------LDEGFRLKSVMEGSGMRPDVYTYS 203
           N                                   L E   L S M   G+ P+ +TYS
Sbjct: 174 NTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYS 233

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------- 253
           +LI+GLC      +A  L + M  R + P+ + F TL+D  CK G +  A          
Sbjct: 234 SLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQS 293

Query: 254 -------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                               +M +   + D M   G  P  I+YT L++G+CK   ++ A
Sbjct: 294 DLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKA 353

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           + + +EM ++G+  D V +  LI G C  G++ +A  +  EM+  G  PD  TY ++ D 
Sbjct: 354 MGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDY 413

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CKN        LLK +      P +  Y+ +M+G+C+ G+L+ A  L   +   G+ PD
Sbjct: 414 LCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPD 473

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE--KGLVSDYACYTSLVSK 456
             TY I++ G C+ G   +  KL  E  +   S  AC  +L+++
Sbjct: 474 VRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITR 517



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 186/374 (49%), Gaps = 8/374 (2%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G    AI+  R + +   R        +ID + +    T  L  + ++L  G SP+ + 
Sbjct: 172 VGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFT 231

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           ++ L+H LC  G  K+A  +F     R +    ++FNTL++  CK   + +   +  VM 
Sbjct: 232 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMI 291

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            S ++PDV TY++L++G C  + +     +   M  +G  P+ + +TTLI+G+CK   +D
Sbjct: 292 QSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMD 351

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A  + +EM   GL PD +TY  L+ G C  G L  A+ +  EM+  G   D V
Sbjct: 352 ------KAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLV 405

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  L    C+  ++ EA  +L+ +    L PD   Y++V+D  C+ G+ +    L  ++
Sbjct: 406 TYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKL 465

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            S G  P V TY  ++NGLC+ G L  A+ L   M + G  P+  TYN++  G  +  N 
Sbjct: 466 SSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLR--NN 523

Query: 432 EDFDKLQSEKGLVS 445
           E    +Q  + ++S
Sbjct: 524 ETLRAIQLFQEMLS 537



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 193/401 (48%), Gaps = 25/401 (6%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLD 63
           R T+  YST++  L   +  ++A  L   +++K G+  +   ++S++        GL + 
Sbjct: 191 RPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAK-GISPNNFTYSSLIH-------GLCI- 241

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-D 122
                   LG   +AI+ F  +              L+D + +  +  V   + ++++  
Sbjct: 242 --------LGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGM-VVKAHYVVDVMIQ 292

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
               P V  +N LM   C   ++     VFD   ++G   + +S+ TLING+CK + +D+
Sbjct: 293 SDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDK 352

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L   M   G+ PD  TY+ LI+GLC   RL DA  L HEM   G  P+ V +  L D
Sbjct: 353 AMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFD 412

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CKN R      + EA  ++  +    L+PD   Y+I++DG C+ G+LE+A D+  ++ 
Sbjct: 413 YLCKNHR------LAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLS 466

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+  D   +T +I+G C+ G + EA ++  EM + G  P+  TY ++   F +N +T 
Sbjct: 467 SKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETL 526

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              +L +EM S G    V T   L+  L   G  ++   +L
Sbjct: 527 RAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQIL 567



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 157/320 (49%), Gaps = 9/320 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           I DA  +F+   +     + V F+ L+    + K+      L   M+  G+  + YT + 
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN  C  NRL  A  +L ++ + G  P+   FTTLI G C  G+I       EA ++ D
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIG------EALQLFD 148

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G  PD +TY  L++G CK G+  +A+   + M +R      V ++ +I   C+  
Sbjct: 149 KMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDR 208

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           ++ EA  +  +ML  G+ P++ TY+ +I   C  G  K   RL   M     +P   T+N
Sbjct: 209 QLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFN 268

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC---KHGNPEDFDKLQSEK 441
            L++ LCK G +  A+ ++D M+   + PD +TYN L++GHC   + G   +       K
Sbjct: 269 TLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRK 328

Query: 442 GLVSDYACYTSLVSKSSKYR 461
           G V     YT+L++   K +
Sbjct: 329 GCVPSVISYTTLINGYCKIQ 348



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 164/359 (45%), Gaps = 27/359 (7%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L +RM+R   P                PS+  F+ L+  + +         ++ +    G
Sbjct: 41  LFNRMLRMRPP----------------PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFG 84

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +     + N LIN  C    L   F +   +   G +P   T++ LI GLC E ++ +A 
Sbjct: 85  IPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEAL 144

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M   G  P+ + + TLI+G CK       G+   A + +  M      P  + Y+
Sbjct: 145 QLFDKMTGEGFQPDVLTYGTLINGLCK------VGNTSTAIRFLRSMEQRNCRPTVVVYS 198

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CK+  L  AL +  +M+ +GI  +N  +++LI G C  G   EA R+   M+  
Sbjct: 199 TIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHR 258

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + PD  T+  ++D  CK G       ++  M      P V TYN+LM+G C   ++   
Sbjct: 259 KIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKT 318

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
             + DTM+  G VP  I+Y  L+ G+CK    +     F+++ S++GL+ D   Y +L+
Sbjct: 319 VNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEM-SQQGLIPDTVTYNTLI 376



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +G + E+   G  P    +N L+H LC  G+++DA  +F E    G     V++  L + 
Sbjct: 354 MGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDY 413

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK   L E   L  V+EG+ + PD++ YS +++G+C+   L+ A  L  ++  +GL P+
Sbjct: 414 LCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPD 473

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              +T +I+G C+ G       + EA K+  EM  NG +P+  TY ++  GF +  +   
Sbjct: 474 VRTYTIMINGLCQQGL------LAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLR 527

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           A+ + +EM+ RG  +D    T L+      G     +++L E ++
Sbjct: 528 AIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQILCEFVQ 572


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 216/452 (47%), Gaps = 37/452 (8%)

Query: 37  KGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           KGM  + SL+  ++  R   LP +V L AL+      G   +A   FR + K     P  
Sbjct: 271 KGMDEAFSLYEGMV--RSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGV-APNH 327

Query: 96  GCRC-LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
              C LID + +    + +LG   E++  G    + ++  LM +L KEGKI++A+ V   
Sbjct: 328 VTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRH 387

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
                +    V++  L++ HC+A N+D   ++   ME   + P+V T+S++INGL K   
Sbjct: 388 AQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGC 447

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCK----NGRIDMAGDM----KEARKIVDEM 266
           L  A   + +M + G+ PN V + TLIDG  K       +D+  DM     EA   V + 
Sbjct: 448 LGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDS 507

Query: 267 CTNGLNP---------------------DKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             NGL                       D + YT L+DG  K G++ +A  + +E++++ 
Sbjct: 508 LVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKN 567

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D V +   I+  C  GK  EA+  L+EM   GL+PD ATY  +I   C+ G T    
Sbjct: 568 LSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKAL 627

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +LLKEM+ +   P + TY  L+ GL + G +K A  LL+ M   G  P  +T+  +L+  
Sbjct: 628 KLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQAC 687

Query: 426 CKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
                P+   +  +L    GL +D   Y +LV
Sbjct: 688 SGSRRPDVILEIHELMMGAGLHADITVYNTLV 719



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 171/361 (47%), Gaps = 31/361 (8%)

Query: 100 LIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           L+D + +T N+P        E+++   SP   V+NV ++ LC  GK  +A+    E    
Sbjct: 543 LMDGLFKTGNMPA-AFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNT 601

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++NT+I   C+     +  +L   M+ + ++P++ TY+ L+ GL +   +  A
Sbjct: 602 GLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKA 661

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------- 253
           + LL+EM   G  P  +    ++     + R D+                          
Sbjct: 662 KFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHV 721

Query: 254 ----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
               G  + A  ++DEM T G+ PD IT+  L+ G CK   L++A  I  +M+ +G+  +
Sbjct: 722 LCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPN 781

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              F  L+ G    G++ EA+ +L +M KVGL+P++ TY +++  + K  +     RL  
Sbjct: 782 IATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYC 841

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM S G +P   TYN+LM+   K G +  A  L   M   GV+    TY+ILL G  K  
Sbjct: 842 EMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLR 901

Query: 430 N 430
           N
Sbjct: 902 N 902



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 199/427 (46%), Gaps = 13/427 (3%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF--R 91
           +S++G G  A    S +  RG    G+ +   ++     G + +A     +L +      
Sbjct: 125 LSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGIDG 184

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           +   G   LID   +       L     +   G +  V  +N L+      G    A  V
Sbjct: 185 LDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEV 244

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            +     G+    V++  LI  +CK K +DE F L   M  SG+ PDV T SAL++GLC+
Sbjct: 245 VERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCR 304

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           + +  +A  L  EM + G+ PN V + TLID   K  R        E+  ++ EM + G+
Sbjct: 305 DGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARR------GSESLGLLGEMVSRGV 358

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             D + YT L+D   KEG +E A D+ +      I  + V +T L+   CR G +  AE+
Sbjct: 359 VMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQ 418

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L +M +  + P+  T++ +I+   K G        +++M+  G  P V TY  L++G  
Sbjct: 419 VLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFF 478

Query: 392 K-HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDY 447
           K  GQ    ++  D ML  GV  ++   + L+ G  K+GN E  + L     E+GL+ D+
Sbjct: 479 KFQGQEAALDVYRD-MLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDH 537

Query: 448 ACYTSLV 454
             YT+L+
Sbjct: 538 VNYTTLM 544



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 182/398 (45%), Gaps = 44/398 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       L  Y ++L  G   + +V + L++ L K G I+ A+ +F +  +RG
Sbjct: 473 LIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERG 532

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V++ TL++G  K  N+   F++   +    + PD   Y+  IN LC   +  +A+
Sbjct: 533 LLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAK 592

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             L EM   GL P+   + T+I   C+ G+        +A K++ EM  N + P+ ITYT
Sbjct: 593 SFLKEMRNTGLEPDQATYNTMIAARCREGKTS------KALKLLKEMKRNSIKPNLITYT 646

Query: 280 ILLDGFCKEGDLESA-----------------------------------LDIRKEMIKR 304
            L+ G  + G ++ A                                   L+I + M+  
Sbjct: 647 TLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGA 706

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  D   +  L+   C  G    A  +L EML  G+ PD  T+  +I   CK+      
Sbjct: 707 GLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNA 766

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F +  +M   G  P + T+N L+ GL   G++  A+ +L  M  +G+ P+++TY+IL+ G
Sbjct: 767 FAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTG 826

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           + K  N  +  +L  E   KG +   + Y SL+S  +K
Sbjct: 827 YAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAK 864



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 172/329 (52%), Gaps = 11/329 (3%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM- 190
           +N+ +  L ++G  + A  V  E  KRG+    V+ +T + G C+   + E   L  ++ 
Sbjct: 118 YNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLV 177

Query: 191 EGSGMRP-DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
            G G+   DV  ++ALI+G CK   +  A  ++  M  +G+  + V + +L+ G      
Sbjct: 178 RGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFH--- 234

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
              +GD   A ++V+ M  +G+ P+ +TYT L+  +CK   ++ A  + + M++ G+  D
Sbjct: 235 ---SGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPD 291

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V  +AL+ G CR G+  EA  + REM K+G+ P+  TY  +ID   K         LL 
Sbjct: 292 VVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLG 351

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM S G +  +  Y ALM+ L K G+++ A  +L       + P+ +TY +L++ HC+ G
Sbjct: 352 EMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAG 411

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLVS 455
           N +  +++     EK ++ +   ++S+++
Sbjct: 412 NIDGAEQVLLQMEEKSVIPNVVTFSSIIN 440



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 138/262 (52%), Gaps = 6/262 (2%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P V L  +  ++  G    + V+N L+H LC  G  ++A +V DE   RG+    ++FN 
Sbjct: 693 PDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNA 752

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI GHCK+ +LD  F + + M   G+ P++ T++ L+ GL    R+ +A+ +L +M + G
Sbjct: 753 LILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVG 812

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN++ +  L+ G+ K        +  EA ++  EM + G  P   TY  L+  F K G
Sbjct: 813 LEPNNLTYDILVTGYAKK------SNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAG 866

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +  A ++  EM +RG+   +  +  L++G+ +    +E   +L++M ++G KP   T +
Sbjct: 867 MMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTIS 926

Query: 350 MVIDCFCKNGDTKTGFRLLKEM 371
            +   F + G T    RLLK +
Sbjct: 927 SMSRAFSRPGMTGEARRLLKTL 948



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 152/309 (49%), Gaps = 11/309 (3%)

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRL----KSVMEGSGMRPDVYTYSALINGLCKEN 213
           R +    ++ N++I  +C  ++L     L          S +  D  +Y+  +  L ++ 
Sbjct: 70  RPVPGDTLTLNSIILSYCSLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSEQG 129

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
               A  +L EMC+RG++ + V  +T + G C+ G +  A  + E   +V     +GL  
Sbjct: 130 HGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAE--MLVRGRGIDGL-- 185

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D + +  L+DG+CK  D+ +AL + + M  +G+ LD V + +L++GF   G    A  ++
Sbjct: 186 DVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVV 245

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M   G++P+  TYT +I  +CK       F L + M   G LP V T +AL++GLC+ 
Sbjct: 246 ERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRD 305

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           GQ   A  L   M  +GV P+ +TY  L++   K     +   L  E   +G+V D   Y
Sbjct: 306 GQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMY 365

Query: 451 TSLVSKSSK 459
           T+L+ +  K
Sbjct: 366 TALMDRLGK 374



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 118/303 (38%), Gaps = 66/303 (21%)

Query: 7   LHA----YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           LHA    Y+T+VH L  H                 GM  +A++    + TRG     +  
Sbjct: 708 LHADITVYNTLVHVLCCH-----------------GMARNATVVLDEMLTRGIAPDTITF 750

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL++ +     LD+A                                      Y ++L 
Sbjct: 751 NALILGHCKSSHLDNA-----------------------------------FAIYAQMLH 775

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G SP++  FN L+  L   G+I +A  V  +  K GL    ++++ L+ G+ K  N  E
Sbjct: 776 QGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVE 835

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M   G  P   TY++L++   K   ++ A+ L  EM  RG+      +  L++
Sbjct: 836 ALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLN 895

Query: 243 GHCK--NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           G  K  NG         E R ++ +M   G  P K T + +   F + G    A  + K 
Sbjct: 896 GWSKLRNG--------IEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRLLKT 947

Query: 301 MIK 303
           + K
Sbjct: 948 LFK 950


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 211/449 (46%), Gaps = 49/449 (10%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           L++ G  +       L+  Y  +G  + A++ F  +++   R        ++  MMR  +
Sbjct: 118 LKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEV 177

Query: 110 P-TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              +    Y E+L    SP++Y F +LM  L K+G+  DAQ +FD+   RG+    V++ 
Sbjct: 178 FFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYT 237

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            LI+G C+  + D+  +L   M+ SG  PD   ++AL++G CK  R+ +A  LL    + 
Sbjct: 238 ILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKD 297

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G       +++LIDG  +  R        +A ++   M    + PD I YTIL+ G  K 
Sbjct: 298 GFVLGLRGYSSLIDGLFRARR------YTQAFELYANMLKKNIKPDIILYTILIQGLSKA 351

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G +E AL +   M  +GI  D   + A+I   C  G + E   +  EM +    PD  T+
Sbjct: 352 GKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTH 411

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL----- 403
           T++I   C+NG  +    +  E+   G  P+V T+NAL++GLCK G+LK A +LL     
Sbjct: 412 TILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEV 471

Query: 404 ------------------DTML----------------DLGVVPDDITYNILLEGHCKHG 429
                             DTM+                D G  PD ++YN+L+ G C+ G
Sbjct: 472 GRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAG 531

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVS 455
           + +   KL +    KGL  D   Y +L++
Sbjct: 532 DIDGALKLLNVLQLKGLSPDSVTYNTLIN 560



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 167/353 (47%), Gaps = 13/353 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G S   Y F VL+    K G  + A   F    +        ++N ++    + +
Sbjct: 117 ELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREE 176

Query: 179 NLDE-GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
                 F + + M      P++YT+  L++GL K+ R  DA+ +  +M  RG++PN V +
Sbjct: 177 VFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTY 236

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T LI G C+ G  D      +ARK+  EM T+G  PD + +  LLDGFCK G +  A ++
Sbjct: 237 TILISGLCQRGSAD------DARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFEL 290

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +   K G  L    +++LI G  R  +  +A  +   MLK  +KPD   YT++I    K
Sbjct: 291 LRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSK 350

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +   +LL  M S G  P    YNA++  LC  G L+    L   M +    PD  T
Sbjct: 351 AGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACT 410

Query: 418 YNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS---KSSKYRQKR 464
           + IL+   C++G   + +++ +E    G     A + +L+    KS + ++ R
Sbjct: 411 HTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEAR 463



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 190/459 (41%), Gaps = 67/459 (14%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           ++G    A      ++T G +   +  +AL+  +  LG + +A +  RL  K  F +  R
Sbjct: 245 QRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLR 304

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           G   LID + R    T     Y  +L     P + ++ +L+  L K GKI+DA  +    
Sbjct: 305 GYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSM 364

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +G+      +N +I   C    L+EG  L+  M  +   PD  T++ LI  +C+   +
Sbjct: 365 PSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLV 424

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------------- 253
            +AE +  E+ + G +P+   F  LIDG CK+G +  A                      
Sbjct: 425 REAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHS 484

Query: 254 -----------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
                      G + +A + +      G +PD ++Y +L++GFC+ GD++ AL +   + 
Sbjct: 485 GNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQ 544

Query: 303 KRGIELDNVAFTALISGF---------------------------------CRGGKVVEA 329
            +G+  D+V +  LI+G                                  CR  KV+ A
Sbjct: 545 LKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWSCRKRKVLVA 604

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  + LK     DD T   +  CF K G+T+   R L E+ +      +  Y   + G
Sbjct: 605 FNLWMKYLKKISCLDDETANEIEQCF-KEGETERALRRLIELDTRKDELTLGPYTIWLIG 663

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           LC+ G+   A M+   + +  ++    +   L+ G CK 
Sbjct: 664 LCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKR 702


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 32/387 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID +++        G   E++ +G +   Y+++  +  + KEG ++ A+ +FD     G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   A ++ +LI G+C+ KN+ +G+ L   M+   +    YTY  ++ G+C    LD A 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGR-----------------------------I 250
            ++ EM   G  PN VI+TTLI    +N R                             +
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             A  M EAR  + EM  NGL P+  TY   + G+ +  +  SA    KEM + G+  + 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V  T LI+ +C+ GKV+EA    R M+  G+  D  TYT++++   KN        + +E
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           MR  G  P V +Y  L+NG  K G ++ A+ + D M++ G+ P+ I YN+LL G C+ G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            E   +L  E   KGL  +   Y +++
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTII 704



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 209/450 (46%), Gaps = 26/450 (5%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H YS ++  L+  +    A+ L+H +VS                  G ++   + D  + 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVS-----------------HGINIKPYMYDCCIC 355

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           V    G ++ A   F  +        A+    LI+   R           +E+       
Sbjct: 356 VMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S Y +  ++  +C  G +  A  +  E    G     V + TLI    +     +  R+ 
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+  G+ PD++ Y++LI GL K  R+D+A   L EM E GL PN   +   I G+ + 
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE- 534

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                A +   A K V EM   G+ P+K+  T L++ +CK+G +  A    + M+ +GI 
Sbjct: 535 -----ASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGIL 589

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D   +T L++G  +  KV +AE + REM   G+ PD  +Y ++I+ F K G+ +    +
Sbjct: 590 GDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSI 649

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM  +G  P V  YN L+ G C+ G+++ A  LLD M   G+ P+ +TY  +++G+CK
Sbjct: 650 FDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCK 709

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            G+  +  +L  E   KGLV D   YT+LV
Sbjct: 710 SGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739



 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 194/412 (47%), Gaps = 72/412 (17%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V ++  L+    +  +  DA  V  E  ++G+      +N+LI G  KAK
Sbjct: 442 EMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE       M  +G++P+ +TY A I+G  + +    A+  + EM E G+ PN V+ T
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 239 TLIDGHCKNGRIDMA-------------GDMK----------------EARKIVDEMCTN 269
            LI+ +CK G++  A             GD K                +A +I  EM   
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ PD  +Y +L++GF K G+++ A  I  EM++ G+  + + +  L+ GFCR G++ +A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           + +L EM   GL P+  TY  +ID +CK+GD    FRL  EM+  G +P    Y  L++G
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 390 LCKHGQLKNA--------------------------------------NMLLDTMLDLGV 411
            C+   ++ A                                      N L+D   D   
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
            P+D+TYNI+++  CK GN E     F ++Q+   L+     YTSL++   K
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN-ANLMPTVITYTSLLNGYDK 852



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 192/361 (53%), Gaps = 8/361 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA + FR +R             LI+   +          + E+++ G +P+V ++N+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   C+ G+I+ A+ + DE   +GLH  AV++ T+I+G+CK+ +L E FRL   M+  G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD + Y+ L++G C+ N ++ A + +    ++G   +   F  LI+   K G+ ++  
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           ++    +++D        P+ +TY I++D  CKEG+LE+A ++  +M    +    + +T
Sbjct: 787 EV--LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS- 373
           +L++G+ + G+  E   +  E +  G++PD   Y+++I+ F K G T     L+ +M + 
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904

Query: 374 ----DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
               DG   ++ T  AL++G  K G+++ A  +++ M+ L  +PD  T   L+   C   
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISS 964

Query: 430 N 430
           N
Sbjct: 965 N 965



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 173/368 (47%), Gaps = 32/368 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y ++VL+  LCK  +++DA+ +  E    G+     +++ LI+G  K +N D  
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G+    Y Y   I  + KE  ++ A+ L   M   GL P    + +LI+G
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 244 HC--KNGR------IDM---------------------AGDMKEARKIVDEMCTNGLNPD 274
           +C  KN R      ++M                     +GD+  A  IV EM  +G  P+
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + YT L+  F +      A+ + KEM ++GI  D   + +LI G  +  ++ EA   L 
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM++ GLKP+  TY   I  + +  +  +  + +KEMR  G LP       L+N  CK G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           ++  A     +M+D G++ D  TY +L+ G  K+   +D +++  E   KG+  D   Y 
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYG 631

Query: 452 SLVSKSSK 459
            L++  SK
Sbjct: 632 VLINGFSK 639



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 171/392 (43%), Gaps = 37/392 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILD-----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           +++RM+  N P   +  +  I+       G S    +F +L      +G I++A  VF  
Sbjct: 119 VVERMIERNWPVAEV--WSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSS 176

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC---- 210
                L         L++   +   LD  + +   M    +  DV TY  LI   C    
Sbjct: 177 SMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGN 236

Query: 211 ------------KENR-----LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
                       KE R     +D A  L   M  +GL P    +  LIDG CK  R++  
Sbjct: 237 VQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLE-- 294

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               +A+ ++ EM + G++ D  TY++L+DG  K  + ++A  +  EM+  GI +    +
Sbjct: 295 ----DAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMY 350

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
              I    + G + +A+ +   M+  GL P    Y  +I+ +C+  + + G+ LL EM+ 
Sbjct: 351 DCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKK 410

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE---GHCKHGN 430
              + +  TY  ++ G+C  G L  A  ++  M+  G  P+ + Y  L++    + + G+
Sbjct: 411 RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGD 470

Query: 431 PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
                K   E+G+  D  CY SL+   SK ++
Sbjct: 471 AMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 224/451 (49%), Gaps = 39/451 (8%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           ++L A  T+   LV  KMH + ++L +LI+S           +SI +T+ + L  +V   
Sbjct: 37  ISLDATPTIARILVRAKMHEEIQELHNLILS-----------SSIQKTKLSSLLSVV--- 82

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC-----LIDRMMRTNLPTVTLGFYLE 119
              ++     +D A   F+L+R    R P           L++  ++          Y +
Sbjct: 83  --SIFAKSNHIDKAFPQFQLVRS---RFPENKPSVYLYNLLLESCIKERRVEFVSWLYKD 137

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G +P  Y FN+L+  LC    +  A+ +FDE  ++G      +F  L+ G+CKA  
Sbjct: 138 MVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGL 197

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            D+G  L + ME  G+ P+   Y+ +++  C+E R DD+E ++ +M E GL P+ V F +
Sbjct: 198 TDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNS 257

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GL-NPDKITYTILLDGFCKEGDLESAL 295
            I   CK G++       +A +I  +M  +   GL  P+ ITY ++L GFCK G LE A 
Sbjct: 258 RISALCKEGKV------LDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAK 311

Query: 296 DIRKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            +  E I+   +L ++ ++   + G  R GK +EAE +L++M   G+ P   +Y +++D 
Sbjct: 312 TLF-ESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDG 370

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK G       ++  M+ +G  P   TY  L++G C  G++  A  LL  M+    +P+
Sbjct: 371 LCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPN 430

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKG 442
             T NILL    K G   + ++L    +EKG
Sbjct: 431 AYTCNILLHSLWKMGRISEAEELLRKMNEKG 461



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 191/406 (47%), Gaps = 21/406 (5%)

Query: 51  ETRGTHLPGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           E  G   P  +   LM+  +  +G L+DA   F  +R++      +     +  ++R   
Sbjct: 282 EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGK 341

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                    ++ D G  PS+Y +N+LM  LCK G + DA+ +     + G+   AV++  
Sbjct: 342 FIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGC 401

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L++G+C    +D    L   M  +   P+ YT + L++ L K  R+ +AE LL +M E+G
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKG 461

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK-----------------IVDEMCTNGLN 272
              + V    ++DG C +G +D A ++ +  +                 + D +  N   
Sbjct: 462 YGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCL 521

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD ITY+ LL+G CK G    A ++  EM+   ++ D+VA+   I  FC+ GK+  A R+
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L++M K G      TY  +I              L+ EM+  G  P + TYN  +  LC+
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
             ++++A  LLD M+   + P+  ++  L+E  CK     DFD  Q
Sbjct: 642 GEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK---VPDFDMAQ 684



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 29/336 (8%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+  +N+ +  L + GK  +A+ V  +   +G+  +  S+N L++G CK   L +   + 
Sbjct: 325 SLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIV 384

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +M+ +G+ PD  TY  L++G C   ++D A+ LL EM      PN      L+    K 
Sbjct: 385 GLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKM 444

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM------ 301
           GRI       EA +++ +M   G   D +T  I++DG C  G+L+ A++I K M      
Sbjct: 445 GRIS------EAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSA 498

Query: 302 -----------------IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
                            I+     D + ++ L++G C+ G+  EA+ +  EM+   L+PD
Sbjct: 499 ALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPD 558

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
              Y + I  FCK G   + FR+LK+M   G   ++ETYN+L+ GL    Q+   + L+D
Sbjct: 559 SVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMD 618

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            M + G+ P+  TYN  ++  C+    ED   L  E
Sbjct: 619 EMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDE 654



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 11/258 (4%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E++     P    +N+ +H  CK+GKI  A  V  +  K+G H +  ++N+LI G  
Sbjct: 546 LFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLG 605

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               + E   L   M+  G+ P++ TY+  I  LC+  +++DA  LL EM ++ + PN  
Sbjct: 606 IKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVF 665

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLNPDKITYTILLDGFCKEGDLES 293
            F  LI+  CK    DMA   +E  +    +C    GL      Y+++ +     G L  
Sbjct: 666 SFKYLIEAFCKVPDFDMA---QEVFETAVSICGQKEGL------YSLMFNELLAAGQLLK 716

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++ + ++ RG EL    +  L+   C+  ++  A  +L +M+  G   D A    VID
Sbjct: 717 ATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVID 776

Query: 354 CFCKNGDTKTGFRLLKEM 371
              K G+ K       +M
Sbjct: 777 GLGKMGNKKEANSFADKM 794


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 183/339 (53%), Gaps = 19/339 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G SP V  FNVL++  CKE  I  A  VF E  ++G+ A  V++N+L++G C+  
Sbjct: 251 EMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREG 310

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++  +L   ME  G+   + T ++++NG CK+  + +AE  +  + +RG+ PN + + 
Sbjct: 311 KVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYN 370

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+DG+ +       G MKEA    D M   G++P+  TY  L+ GF    D  S   + 
Sbjct: 371 TLVDGYRR------LGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLL 424

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM ++G++ D V +  LI   C  G+V +A ++L EM++VGL+P    Y  +I+ FC+ 
Sbjct: 425 DEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEK 484

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           GD +    +   M        V TYN  +   CK G++  AN++L+ ML+ G+VP+ ITY
Sbjct: 485 GDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITY 544

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKS 457
            I+  G               EKG V D + Y + VSK+
Sbjct: 545 EIINSGMI-------------EKGYVPDISGYAADVSKN 570



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 170/352 (48%), Gaps = 44/352 (12%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y PS +  N L+  L +  ++  A   F    +R +     +FN +I+G CK   L +  
Sbjct: 149 YRPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAG 208

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDD---AELLLHEMCERGLTPNDVIFTTLI 241
            +   +   G+ P V TY+ LI+G CK  ++      + LL EM + G++P+ V F  LI
Sbjct: 209 DVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLI 268

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CK   I        A K+  EM   G+  + +TY  L+ G C+EG +E ++ + +EM
Sbjct: 269 NGYCKEPNIT------AAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEM 322

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID-------- 353
            + G+        ++++GFC+ G +VEAE  +  + + G+KP+  TY  ++D        
Sbjct: 323 EELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKM 382

Query: 354 -----------------------C----FCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
                                  C    F  + D ++   LL EM+  G    V TYN L
Sbjct: 383 KEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVL 442

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
           +  LC  G+++ A  LLD M+++G+ P  + YN ++ G C+ G+ +   +++
Sbjct: 443 IGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIR 494



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 173/368 (47%), Gaps = 25/368 (6%)

Query: 34  VSKKGMGSSASLFASILE---TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90
           +S  G+  S + + ++++    RG       +DAL+   +  G   D +  F +L   Y 
Sbjct: 214 ISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVT-FNVLINGYC 272

Query: 91  RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
           + P              N+ T  +  + E+   G   +V  +N L+  LC+EGK++D+  
Sbjct: 273 KEP--------------NI-TAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIK 317

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           + +E  + GL     + N+++NG CK   + E       +   GM+P+V TY+ L++G  
Sbjct: 318 LVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYR 377

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           +  ++ +A      M  +G++PN   +  LI G         + D +    ++DEM   G
Sbjct: 378 RLGKMKEAAAAKDAMAGKGISPNVKTYNCLITG------FTTSRDWRSVSGLLDEMKEKG 431

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +  D +TY +L+   C +G++  A+ +  EM++ G+E  +VA+  +I+GFC  G    A 
Sbjct: 432 VKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAH 491

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +   M K   + +  TY + +  FCK G       +L EM   G +P   TY  + +G+
Sbjct: 492 EIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGM 551

Query: 391 CKHGQLKN 398
            + G + +
Sbjct: 552 IEKGYVPD 559



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CLI     +       G   E+ + G    V  +NVL+  LC +G+++ A  + DE  + 
Sbjct: 406 CLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEV 465

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL    V++NT+ING C+  +      ++  ME    R +V TY+  +   CK  ++D+A
Sbjct: 466 GLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEA 525

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI-DMAGDMKEARK 261
            ++L+EM E+GL PN + +  +  G  + G + D++G   +  K
Sbjct: 526 NVVLNEMLEKGLVPNRITYEIINSGMIEKGYVPDISGYAADVSK 569


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 219/450 (48%), Gaps = 37/450 (8%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           ++L A  TM   LV  KMH +  +L +LI+S           +SI +T+ + L  +V   
Sbjct: 37  ISLAATPTMACILVRAKMHEEIEELHNLILS-----------SSIQKTKLSSLLSVV--- 82

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-----RCLIDRMMRTNLPTVTLGFYLE 119
              ++     +D A   F+ +R    R P           L++  +R          Y +
Sbjct: 83  --SIFAKSNHIDKAFPQFQFVRS---RFPENKPGIYLYNVLLESCIRERRVEFVSWLYKD 137

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G SP  Y FN+L+  LC    +  A+ +FDE  ++G      +F  L+ G+CKA  
Sbjct: 138 MVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGL 197

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            D+G  L + ME  G+ P+   Y+ +++  C+E R DD+E L+ +M E GL P+ V F +
Sbjct: 198 TDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNS 257

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTN---GL-NPDKITYTILLDGFCKEGDLESAL 295
            I   CK G++       +A +I  +M  +   GL  P+ ITY ++L GFCK G LE A 
Sbjct: 258 RISALCKEGKV------LDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAK 311

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + + + +    +   ++   + G  R GK +EAE +L++M+  G+ P   +Y +++D  
Sbjct: 312 TLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGL 371

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G       ++  M+ +G  P   TY  L++G C  G++  A  LL  M+    +P+ 
Sbjct: 372 CKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNA 431

Query: 416 ITYNILLEGHCKHGNPEDFDKL---QSEKG 442
            T NILL      G   + ++L    +EKG
Sbjct: 432 YTCNILLHSLWNMGRISEAEELLRKMNEKG 461



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 191/406 (47%), Gaps = 21/406 (5%)

Query: 51  ETRGTHLPGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           E  G   P  +   LM+  +  +G L+DA   F  +R++   +  +     +  ++R   
Sbjct: 282 EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGK 341

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
                    +++D G  PS+Y +N+LM  LCK G + DA+ +     + G+   AV++  
Sbjct: 342 FIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGC 401

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L++G+C    +D    L   M  +   P+ YT + L++ L    R+ +AE LL +M E+G
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKG 461

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK-----------------IVDEMCTNGLN 272
              + V    ++DG C +G +D A ++ +  +                 + D +  N   
Sbjct: 462 YGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCL 521

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD ITY+ LL+G CK G    A  +  EM+   ++ D++A+   I  FC+ GK+  A R+
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRV 581

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L++M K G      TY  +I              L+ EMR  G  P + TYN  +  LC+
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCE 641

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
            G++++A  LLD M+   + P+  ++  L+   CK     DFD  Q
Sbjct: 642 GGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCK---VPDFDMAQ 684



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 29/336 (8%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+  +N+ +  L + GK  +A+ V  +   +G+  +  S+N L++G CK   L +   + 
Sbjct: 325 SLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIV 384

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +M+ +G+ PD  TY  L++G C   ++D A+ LL EM      PN      L+      
Sbjct: 385 GLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNM 444

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM------ 301
           GRI       EA +++ +M   G   D +T  I++DG C  G+L+ A++I K M      
Sbjct: 445 GRIS------EAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSA 498

Query: 302 -----------------IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
                            I+     D + ++ L++G C+ G+  EA+ +  EM+   L+PD
Sbjct: 499 ALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPD 558

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
              Y + I  FCK G   + FR+LK+M   G   ++ETYN+L+ GL    Q+   + L+D
Sbjct: 559 SLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMD 618

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            M + G+ P+  TYN  ++  C+ G  ED   L  E
Sbjct: 619 EMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDE 654



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 11/258 (4%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E++     P    +N+ +H  CK+GKI  A  V  +  K+G H +  ++N+LI G  
Sbjct: 546 LFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLG 605

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               + E   L   M   G+ P++ TY+  I  LC+  +++DA  LL EM ++ + PN  
Sbjct: 606 IKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVF 665

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLNPDKITYTILLDGFCKEGDLES 293
            F  LI   CK    DMA   +E  +    +C    GL      Y+++ +     G L  
Sbjct: 666 SFKYLIGAFCKVPDFDMA---QEVFETAVSICGQKEGL------YSLMFNELLAAGQLLK 716

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++ + ++ RG EL    +  L+   C+  ++  A  +L +M+  G   D A    VID
Sbjct: 717 ATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVID 776

Query: 354 CFCKNGDTKTGFRLLKEM 371
              K G+ K      ++M
Sbjct: 777 GLGKMGNKKEANNFAEKM 794


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 167/315 (53%), Gaps = 11/315 (3%)

Query: 119 EILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           EI  Y    G+ P +  +++L+H    EG+  D   +F     +G+ A    FN LI+ H
Sbjct: 390 EIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            K   +DE   + + M+G G+RPDV TYS LI+  C+  RL DA     +M   GL PN 
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNT 509

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTILLDGFCKEGDLES 293
           V++ +LI G C      M GD+ +A+++V EM + G+  P+ + ++ ++   C EG +  
Sbjct: 510 VVYHSLIHGFC------MHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMD 563

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A D+   +I  G     V F +LI G+C  GK+ +A  +L  M+ VG++PD  TY  ++ 
Sbjct: 564 AHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVS 623

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +CK+G    G  L +EM      P   TY+ +++GL   G+   A  +   M+D G   
Sbjct: 624 GYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAV 683

Query: 414 DDITYNILLEGHCKH 428
           D  TY ILL+G C++
Sbjct: 684 DIDTYKILLKGLCRN 698



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++D G  P    +  ++H     G  K++  +F +   +GL    V+FN+ ++  CK  
Sbjct: 324 QMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHG 383

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              +   +   M   G  PD+ +YS L++G   E R  D   L H M ++G+  N   F 
Sbjct: 384 RSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFN 443

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI  H K G +D      EA  +  EM   G+ PD +TY+ L+  FC+ G L  A++  
Sbjct: 444 ILISAHAKRGMMD------EAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKF 497

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL-KPDDATYTMVIDCFCK 357
            +MI  G+E + V + +LI GFC  G +V+A+ ++ EM+  G+ +P+   ++ +I   C 
Sbjct: 498 SQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCN 557

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G       +   +   G  P + T+N+L++G C  G+++ A  +LD M+ +G+ PD +T
Sbjct: 558 EGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVT 617

Query: 418 YNILLEGHCKHGNPED 433
           YN L+ G+CK G  +D
Sbjct: 618 YNTLVSGYCKSGKIDD 633



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 178/332 (53%), Gaps = 23/332 (6%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            L +++C+E           E G R    +  ++  L++  C+A+  D G    + +  +
Sbjct: 137 ALFNRICRE-----------EAGPRVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRA 185

Query: 194 GMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           G+R      +  +  LC   R D+A ++LLH M + G  PN + + T+I   C + R   
Sbjct: 186 GLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSR--- 242

Query: 253 AGDMKEARKIVDEMCTNG--LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               +EA  +V  M   G   +PD +++  ++ GF K+G++  A ++  EM+++G+E D 
Sbjct: 243 ---SQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDV 299

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V + +++   C+   + +AE +LR+M+  G++PD  TYT +I  +  +G  K   ++ ++
Sbjct: 300 VTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRK 359

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M S G +P + T+N+ M+ LCKHG+ K+A  +   M   G +PD ++Y+ILL G+   G 
Sbjct: 360 MTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGR 419

Query: 431 PEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
             D + L    ++KG+V++  C+  L+S  +K
Sbjct: 420 FADMNNLFHSMADKGIVANCHCFNILISAHAK 451



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 179/366 (48%), Gaps = 19/366 (5%)

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSP-----SVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           D +  +N P + L  +  I      P     SV+ + +LM   C+  +       F    
Sbjct: 124 DSVSCSNGPALVLALFNRICREEAGPRVAPLSVHTYGILMDCCCRARRPDLGPAFFARLL 183

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFR-LKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           + GL    +  NT +   C AK  DE    L   M   G  P+  +Y+ +I  LC ++R 
Sbjct: 184 RAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRS 243

Query: 216 DDAELLLHEMCERG--LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            +A  ++  M + G   +P+ V F T+I G  K G +  A ++      ++EM   G+ P
Sbjct: 244 QEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNL------INEMVQKGVEP 297

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D +TY  ++D  CK   ++ A  + ++M+ +G+E D + +TA+I G+   G   E+ +M 
Sbjct: 298 DVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMF 357

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R+M   GL P   T+   +   CK+G +K    + + M + GH+P + +Y+ L++G    
Sbjct: 358 RKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATE 417

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           G+  + N L  +M D G+V +   +NIL+  H K G  ++    F ++Q + G+  D   
Sbjct: 418 GRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQ-GVRPDVVT 476

Query: 450 YTSLVS 455
           Y++L+S
Sbjct: 477 YSTLIS 482



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 155/309 (50%), Gaps = 7/309 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  FN ++H   K+G++  A  + +E  ++G+    V++N++++  CKA+ +D+   
Sbjct: 261 SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAEL 320

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ PD  TY+A+I+G        ++  +  +M  +GL P  V F + +   C
Sbjct: 321 VLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLC 380

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+GR       K+A +I   M T G  PD ++Y+ILL G+  EG      ++   M  +G
Sbjct: 381 KHGR------SKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKG 434

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  +   F  LIS   + G + EA  +  EM   G++PD  TY+ +I  FC+ G      
Sbjct: 435 IVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAM 494

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV-PDDITYNILLEG 424
               +M S G  P    Y++L++G C HG L  A  L+  M+  G+  P+ + ++ ++  
Sbjct: 495 EKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHS 554

Query: 425 HCKHGNPED 433
            C  G   D
Sbjct: 555 LCNEGRVMD 563



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 163/321 (50%), Gaps = 8/321 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT--AVSFNTLINGHCKAKN 179
           D G  P+   +N ++  LC + + ++A  +     K G   +   VSFNT+I+G  K   
Sbjct: 220 DLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGE 279

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           + +   L + M   G+ PDV TY+++++ LCK   +D AEL+L +M ++G+ P+ + +T 
Sbjct: 280 VSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTA 339

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I G+        +G  KE+ K+  +M + GL P  +T+   +   CK G  + A +I +
Sbjct: 340 IIHGY------SCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQ 393

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D V+++ L+ G+   G+  +   +   M   G+  +   + ++I    K G
Sbjct: 394 YMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRG 453

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EM+  G  P V TY+ L++  C+ G+L +A      M+ +G+ P+ + Y+
Sbjct: 454 MMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYH 513

Query: 420 ILLEGHCKHGNPEDFDKLQSE 440
            L+ G C HG+     +L SE
Sbjct: 514 SLIHGFCMHGDLVKAKELVSE 534



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 184/424 (43%), Gaps = 48/424 (11%)

Query: 3   FRLTLHAYSTMVHFLVAHKM-HSQAR----------DLLHLIVSKKGMGSSASLFASILE 51
           + + LH Y+T   F   + + HS A           ++L    +K+GM   A L  + ++
Sbjct: 407 YSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQ 466

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK--------------HYFRIPARGC 97
            +G     +    L+  +  +G L DA++ F  +                H F +     
Sbjct: 467 GQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLV 526

Query: 98  RC--LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           +   L+  MM   +P                P++  F+ ++H LC EG++ DA  VF+  
Sbjct: 527 KAKELVSEMMSKGIP---------------RPNIVFFSSIIHSLCNEGRVMDAHDVFNLV 571

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G   T V+FN+LI+G+C    +++ F +   M   G+ PDV TY+ L++G CK  ++
Sbjct: 572 IHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKI 631

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           DD  +L  EM  + + P  V ++ ++DG      +  AG    A+K+  EM  +G   D 
Sbjct: 632 DDGLILFREMLHKKVKPTTVTYSIVLDG------LFHAGRTSAAKKMFHEMIDSGTAVDI 685

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY ILL G C+    + A+ +  ++     + D      +I+   +  +  EA  +   
Sbjct: 686 DTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAA 745

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +   GL P+ +TY ++I    K G  +    +   M   G  P+    N ++  L + G 
Sbjct: 746 ISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGD 805

Query: 396 LKNA 399
           +  A
Sbjct: 806 IVKA 809



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 199/478 (41%), Gaps = 66/478 (13%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQ--ARDLLHLIVS---------KKGMGSSASLFASILE 51
           +   +H YS   H+  + KM  +  ++ L+  IV+         K G    A      + 
Sbjct: 337 YTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMT 396

Query: 52  TRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC---LIDRMMRT 107
           T+G H+P LV  ++++  Y   G   D    F  +           C C   LI    + 
Sbjct: 397 TKG-HMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGI---VANCHCFNILISAHAKR 452

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
            +    +  + E+   G  P V  ++ L+   C+ G++ DA   F +    GL    V +
Sbjct: 453 GMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVY 512

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           ++LI+G C   +L +   L S M   G+ RP++  +S++I+ LC E R+ DA  + + + 
Sbjct: 513 HSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVI 572

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD------------ 274
             G  P  V F +LIDG+C      + G M++A  ++D M + G+ PD            
Sbjct: 573 HIGDRPTIVTFNSLIDGYC------LVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYC 626

Query: 275 -----------------------KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                                   +TY+I+LDG    G   +A  +  EMI  G  +D  
Sbjct: 627 KSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDID 686

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  L+ G CR     EA  +  ++  +  K D      VI+   K    +    L   +
Sbjct: 687 TYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAI 746

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-----DDITYNILLEG 424
            + G +P V TY  +++ L K G ++ A+ +  +M   G  P     +DI   +L +G
Sbjct: 747 STSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG 804



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 84/192 (43%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           + L+  Y   G +DD +  FR +     +        ++D +      +     + E++D
Sbjct: 619 NTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMID 678

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +  +  + +L+  LC+     +A  +F + G           NT+IN   K +  +E
Sbjct: 679 SGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREE 738

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + +  SG+ P+V TY  +I+ L KE  +++A+ +   M + G  P+  +   +I 
Sbjct: 739 ANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIR 798

Query: 243 GHCKNGRIDMAG 254
              + G I  AG
Sbjct: 799 MLLQKGDIVKAG 810


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 182/346 (52%), Gaps = 9/346 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+   G++P+V  +  LM     +     A  +  E  + G+     ++NTLING C
Sbjct: 443 LYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLC 502

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               + E   +    E  G  P   TY+++ING  K   +  A  +  +MC +G+ PN V
Sbjct: 503 VVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIV 562

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T+ IDG+CK    D+A       K+++++   GL PD   Y  L+ GFC+EG++  AL
Sbjct: 563 TYTSFIDGYCKTSCCDLA------LKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHAL 616

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   M+K G+  +   + + I+G+     + EA R+  +M+K G+  D ATYT +ID F
Sbjct: 617 QVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGF 676

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K+G+     +L  EM + G++P   T+ AL +GLC++G + +A  LLD M  L + P+ 
Sbjct: 677 SKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNV 736

Query: 416 ITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSS 458
           + YN+L+ G+ ++G  ++  +L     E+ ++ D   Y  LV   S
Sbjct: 737 LMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKS 782



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 165/346 (47%), Gaps = 10/346 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E L  G  P+   + VL+    +EG  + A  +  +    GL  +   FN +I 
Sbjct: 301 ALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIK 360

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G    K   +   L   M  SG+ PD +TY+ LI+ LC+  ++ +A  L  +M E G+ P
Sbjct: 361 GLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKP 419

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
             V + +L+  +C NG +D      EA K+  EM   G  P+ +TYT L+ G   +   +
Sbjct: 420 YIVTYHSLLLCYCVNGCMD------EAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFD 473

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM + G+  ++  +  LI+G C  G+V E   ML+     G  P   TY  +I
Sbjct: 474 KAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSII 533

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + F K G   + F + ++M + G  P + TY + ++G CK      A  +L+ +   G+ 
Sbjct: 534 NGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLR 593

Query: 413 PDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLVS 455
           PD   YN L+ G C+ GN     +   L  + GL+ + + Y S ++
Sbjct: 594 PDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 146/304 (48%), Gaps = 10/304 (3%)

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   +G    A  F+ ++    K    D+  RL   M  S + PD    S  I  LCK  
Sbjct: 167 EMRGKGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
             + A L+L +M + G  P D  F +++D   K GR      M+EA  I DE+   G   
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGR------MEEALHIKDELLATGKKM 280

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
             +  T L+ G+C + ++  ALDI +E ++ G+   +V +T LI G    G   +A  + 
Sbjct: 281 SVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELC 340

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R+M   GL P    + MVI     +   K    L KEM +D  +P   TYN L++ LC+ 
Sbjct: 341 RQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIPDAFTYNILIHWLCQR 399

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
            +++ A  L + M + GV P  +TY+ LL  +C +G  ++  KL +E   KG   +   Y
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 451 TSLV 454
           T+L+
Sbjct: 460 TTLM 463



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 124/268 (46%), Gaps = 6/268 (2%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
            ET G     +  ++++  ++  G +  A   ++ +               ID   +T+ 
Sbjct: 517 FETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSC 576

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             + L    ++   G  P +  +N L+   C+EG +  A  V     K GL      +N+
Sbjct: 577 CDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNS 636

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
            I G+   K ++E  RL   M   G+  D  TY+ LI+G  K+  +  A  L  EM  +G
Sbjct: 637 FITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKG 696

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             P+ + FT L  G C+NG ID      +ARK++DEM    + P+ + Y +L++G+ + G
Sbjct: 697 NIPDHITFTALTHGLCRNGDID------DARKLLDEMNRLDIRPNVLMYNMLINGYLRNG 750

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALI 317
            L+ A  +  EM++R I  D+  +  L+
Sbjct: 751 KLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 42  SASLFASILETRGTHLPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL 100
           S +L   +L  +   LP + V ++ +  Y +L  +++A++ +  + K    +       L
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTL 672

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           ID   +    T  L  Y E++  G  P    F  L H LC+ G I DA+ + DE  +  +
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDI 732

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
               + +N LING+ +   L E FRL   M    + PD  TY  L+
Sbjct: 733 RPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 181/345 (52%), Gaps = 11/345 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+   G+ P+V  +  LM     +    +A  + DE  + G+     ++N LING C
Sbjct: 458 LYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGIC 517

Query: 176 KAKNLDE-GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
               + E    LKS M   G  P + TY+++ING  K   +  A  +  +M E+GL PN 
Sbjct: 518 MVDRVCEVDGMLKSFMS-EGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNI 576

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           + +T+ IDG+C+ G  DMA       K+++++   GL PD + Y  L++GFC+EG++  A
Sbjct: 577 ITYTSFIDGYCRTGCSDMA------LKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHA 630

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L +   ++K G+  + V + +LI+G+     + E  +    M+K G+  D +TYT +ID 
Sbjct: 631 LQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDG 690

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           F K+G+      L  EM + G++P   T+ AL +GLC+ G +  A  LL+ M  L V P+
Sbjct: 691 FSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPN 750

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSK 456
              YN+L+ G+ +    ++  +L  E    G+  D   Y  LVSK
Sbjct: 751 VFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVSK 795



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 178/339 (52%), Gaps = 10/339 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  PS +  ++++  L  + + KDA  +F+E    GL     ++N LI+ HC+A  L E 
Sbjct: 362 GLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREA 420

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+ +G++P + TY++L+ G CK+  +D+A  L  EM   G  PN V + TL+ G
Sbjct: 421 LNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRG 480

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +          D   A  ++DEM  NG++ +  TY +L++G C    +     + K  + 
Sbjct: 481 YIAKK------DFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMS 534

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G     + + ++I+GF + G +  A  + ++M + GL P+  TYT  ID +C+ G +  
Sbjct: 535 EGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDM 594

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L ++R  G  P +  YNAL+NG C+ G + +A  LL  +L  G+ P+ + YN L+ 
Sbjct: 595 ALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLIT 654

Query: 424 GHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           G+      ++  K      + G+V+D + YT+L+   SK
Sbjct: 655 GYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSK 693



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 161/290 (55%), Gaps = 12/290 (4%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C++DR+   +      G     +  G+ P++  +N +++   K G +  A  V+ +  ++
Sbjct: 517 CMVDRVCEVD------GMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREK 570

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL    +++ + I+G+C+    D   ++ + +   G++PD+  Y+ALING C+E  +  A
Sbjct: 571 GLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHA 630

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             LL  + + GL PN V++ +LI G+ KN  ++M   MKE  K  + M   G+  D  TY
Sbjct: 631 LQLLVILLKDGLAPNTVVYNSLITGY-KN--LNM---MKEVSKFYESMIKGGIVADTSTY 684

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T L+DGF K+G++  AL++  EM+ +G   D   FTAL  G CR G +  A+++L EM +
Sbjct: 685 TTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRR 744

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           + ++P+   Y M+I+ + ++   +  FRL  EM + G  P   TY+ L++
Sbjct: 745 LDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVS 794



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 211/493 (42%), Gaps = 54/493 (10%)

Query: 16  FLVAHKMHSQARDLLHLIVSKKGMG--SSASLFASILET---RGTH---------LPGLV 61
            L+     S A+D L L +  +G G    A +F +++      G H         +PG  
Sbjct: 163 LLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAE 222

Query: 62  LDALMIVYV----DLGFLDDAIQCFRLLRKHY---FRIPARGCRCLIDRMMRTNLPTVTL 114
           +D    VY      L  L D  +  R+LR+     F       R ++D +++T      L
Sbjct: 223 IDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEAL 282

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
               E+ D G    V V   LM   C   ++ +A  +F E  K G+  T V +  LI G 
Sbjct: 283 RVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGC 342

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            +     + + L   M G G+ P  +  S ++ GL  + R  DA  L  EM + GL P+ 
Sbjct: 343 DQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDV 401

Query: 235 VIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDE 265
             +  LI  HC+  ++  A                             G M EA K+  E
Sbjct: 402 FTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSE 461

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   G  P+ +TY  L+ G+  + D ++A  +  EM + G+  ++  +  LI+G C   +
Sbjct: 462 MPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDR 521

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V E + ML+  +  G  P   TY  +I+ F K G   + F + ++MR  G  P + TY +
Sbjct: 522 VCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTS 581

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKG 442
            ++G C+ G    A  +L+ +   G+ PD + YN L+ G C+ GN     +L     + G
Sbjct: 582 FIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDG 641

Query: 443 LVSDYACYTSLVS 455
           L  +   Y SL++
Sbjct: 642 LAPNTVVYNSLIT 654



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 164/350 (46%), Gaps = 10/350 (2%)

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           +LP+     Y  ++  G  P +     L+ +  +    KDA  +F E   RG    A  F
Sbjct: 136 DLPSAATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMF 195

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           + L++   K    ++  RL   M G+ + PD   Y+  I  LCK      A  +L EM E
Sbjct: 196 DALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKE 255

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
            G    D  + T++D   K GR      M+EA ++ DEM   G   D I  T L+ G+C 
Sbjct: 256 VGFDTCDFTYRTMVDVLVKTGR------MEEALRVNDEMRDAGKKMDVIVATTLMRGYCL 309

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
             ++ +AL++ KE +K GI    V +  LI G  + G   +A  + R+M   GL P    
Sbjct: 310 RQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFE 369

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
            ++V+     +   K    L +EM +D  LP V TYN L++  C+  +L+ A  L D M 
Sbjct: 370 LSLVLKGLLNDRRWKDAVCLFEEM-ADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMK 428

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             GV P   TYN LL G+CK G  ++  KL SE   +G   +   Y +L+
Sbjct: 429 KAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLM 478



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 10/257 (3%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIP 93
           K GM  SA  F    + R   LP  ++     +  Y   G  D A++    +R+   +  
Sbjct: 553 KAGMMGSA--FTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPD 610

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 LI+   +    +  L   + +L  G +P+  V+N L+        +K+    ++
Sbjct: 611 IVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYE 670

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
              K G+ A   ++ TLI+G  K  N+     L S M   G  PD +T++AL +GLC+  
Sbjct: 671 SMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSG 730

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            +D A+ LL EM    + PN  I+  LI+G+ ++ ++      +EA ++ DEM   G+ P
Sbjct: 731 DIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKL------QEAFRLHDEMLNMGIQP 784

Query: 274 DKITYTILLDGFCKEGD 290
           D  TY IL+     E D
Sbjct: 785 DDTTYDILVSKKFLEAD 801


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 200/403 (49%), Gaps = 17/403 (4%)

Query: 61  VLDALMIVYVDLGFLDDAIQ-CFRLLRKHYFRIPARG-CRCLIDRMMRTNLPTVTLGFYL 118
           V D L+ + ++ G +D A + C  +  ++    P+ G C  +I  + +       L    
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLEIAGRNI--QPSSGTCHSVIQELCKAGRVDSALSLLE 398

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR--GLHATAVSFNTLINGHCK 176
            ++  GY P +   ++L+++LCK  KI++AQ       ++     ++  S+N+L+N  CK
Sbjct: 399 TMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCK 458

Query: 177 AKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           AK + + F + S M       PDV +YS LI+G CK + L  AE L  +M +    PN  
Sbjct: 459 AKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVT 518

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +   ++G  + GRI       +A+ + +EM   G +PD ITY+ L+ GF      + A 
Sbjct: 519 TYNAFLNGLMRKGRI------ADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAH 572

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ + MI RG   + V +  L+ G C+  K  EA  + R+M++ G  PD  TYT ++  F
Sbjct: 573 ELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGF 632

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C  G  +    +  EM S GH P V  YN L+ G  + G+   A  L   M+     PD 
Sbjct: 633 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDT 692

Query: 416 ITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           +++NI+++G  K    +D    F++++ + G   D   Y SL+
Sbjct: 693 VSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 735



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 154/310 (49%), Gaps = 7/310 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   + +  + P V  +++L+   CK  ++  A+ ++ +           ++N  +NG  
Sbjct: 469 FSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLM 528

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   + +   +   M  +G  PDV TYS LI+G     + D A  L   M  RG  PN V
Sbjct: 529 RKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAV 588

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  L+ G CK  + D      EA ++  +M   G +PD++TYT LL GFC  G +E A+
Sbjct: 589 TYNCLLHGLCKESKPD------EAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAV 642

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  EM+ +G + D VA+  L+ GF R GK  EA+++ + M+    KPD  ++ ++ID  
Sbjct: 643 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGL 702

Query: 356 CKNGDTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            K         + + M  D G  P + TYN+L+ GLC   +L  A  +   +  L + PD
Sbjct: 703 SKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPD 762

Query: 415 DITYNILLEG 424
              +N+LLE 
Sbjct: 763 PHAFNVLLEA 772



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 146/293 (49%), Gaps = 13/293 (4%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C ID + R          Y +++D    P+V  +N  ++ L ++G+I DAQ V++E    
Sbjct: 493 CKIDELGRAE------KLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAA 546

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G     ++++TLI+G   A+  D+   L   M   G RP+  TY+ L++GLCKE++ D+A
Sbjct: 547 GCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEA 606

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  +M ERG  P+ V +TTL+ G C  G+I+      +A ++ DEM + G +PD + Y
Sbjct: 607 HELFRKMVERGCDPDRVTYTTLLYGFCNVGKIE------QAVEVFDEMVSKGHDPDVVAY 660

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             LL GF + G    A  + + M+ R  + D V+   +I G  +  ++ +A  +   M +
Sbjct: 661 NCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQ 720

Query: 339 V-GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             G  PD  TY  +I   C         ++ KE+      P    +N L+  +
Sbjct: 721 DHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 156/317 (49%), Gaps = 13/317 (4%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD-EFGKRGLHATAVSFNTLINGH 174
           F+ E++D G+ PS  ++  +   L   GK  +   VF  +  KR      +    L+N  
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFV 245

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP-N 233
            + K + E  +L   M  SG +PD   YS ++   CK   LD+A  L  EM      P N
Sbjct: 246 IQDKAI-EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLN 304

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           +V +T  + G CK+G+I+ A    EA + + E     L+  +  Y +L+    + G ++ 
Sbjct: 305 NVAWTAFLSGLCKSGKIEQAF---EACRTMQE----SLSSSQPVYDMLIRLLIESGRIDK 357

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A +   E+  R I+  +    ++I   C+ G+V  A  +L  M+K G  PD AT++M+I+
Sbjct: 358 AEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLIN 417

Query: 354 CFCKNGDTKTGFRLLKEM--RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML-DLG 410
             CK    +     L+ M  +      +  +YN+L+N LCK  ++  A  +  TM+ +  
Sbjct: 418 ELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERS 477

Query: 411 VVPDDITYNILLEGHCK 427
            VPD ++Y+IL++G CK
Sbjct: 478 FVPDVVSYSILIDGFCK 494



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 42/247 (17%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YST++H     + H QA +L   ++S                 RG     +  + L+   
Sbjct: 555 YSTLIHGFSLARKHDQAHELFETMIS-----------------RGCRPNAVTYNCLLHGL 597

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF------------Y 117
                 D+A + FR       ++  RGC    DR+  T   T+  GF            +
Sbjct: 598 CKESKPDEAHELFR-------KMVERGCD--PDRVTYT---TLLYGFCNVGKIEQAVEVF 645

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E++  G+ P V  +N L+    + GK  +A+ +F     R      VS N +I+G  KA
Sbjct: 646 DEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKA 705

Query: 178 KNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           K LD+   +   ME   G  PD+ TY++LI GLC E RL +A  +  E+    L+P+   
Sbjct: 706 KRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHA 765

Query: 237 FTTLIDG 243
           F  L++ 
Sbjct: 766 FNVLLEA 772



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 11/198 (5%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D  TY  LLD   +  DL+ A  + ++M+ +G+  +   +  L+   C      EA R  
Sbjct: 128 DVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFF 187

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY--NALMNGLC 391
            EM+  G KP    Y  V +C    G      R+    R      AVE     AL+    
Sbjct: 188 GEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFG--RDLEKRVAVEMMLKKALLVNFV 245

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD----- 446
              +   A+ L   M+  G  PD   Y+ ++  HCK  N ++  KL  E  + S      
Sbjct: 246 IQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNN 305

Query: 447 --YACYTSLVSKSSKYRQ 462
             +  + S + KS K  Q
Sbjct: 306 VAWTAFLSGLCKSGKIEQ 323


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 178/349 (51%), Gaps = 10/349 (2%)

Query: 118 LEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           L +LD    SP V  +N ++  LC  GK+K A  V D   +R  +   +++  LI   C+
Sbjct: 192 LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +    +L   M   G  PDV TY+ L+NG+CKE RLD+A   L++M   G  PN + 
Sbjct: 252 DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT 311

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
              ++   C  GR        +A K++ +M   G +P  +T+ IL++  C++G L  A+D
Sbjct: 312 HNIILRSMCSTGR------WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAID 365

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I ++M + G + +++++  L+ GFC+  K+  A   L  M+  G  PD  TY  ++   C
Sbjct: 366 ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALC 425

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K+G  +    +L ++ S G  P + TYN +++GL K G+   A  LLD M    + PD I
Sbjct: 426 KDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTI 485

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           TY+ L+ G  + G  ++  K   E    G+  +   + S++    K RQ
Sbjct: 486 TYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQ 534



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 178/353 (50%), Gaps = 12/353 (3%)

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
           +M+RT        F   ++ +G  P +     L+   C+ GK + A  + +     G   
Sbjct: 111 QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             +++N +I+G+CKA  ++      SV++   + PDV TY+ ++  LC   +L  A  +L
Sbjct: 171 DVITYNVMISGYCKAGEINNAL---SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
             M +R   P+ + +T LI+  C++  +        A K++DEM   G  PD +TY +L+
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVG------HAMKLLDEMRDRGCTPDVVTYNVLV 281

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G CKEG L+ A+    +M   G + + +    ++   C  G+ ++AE++L +ML+ G  
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P   T+ ++I+  C+ G       +L++M   G  P   +YN L++G CK  ++  A   
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           L+ M+  G  PD +TYN +L   CK G  ED  ++ ++   +S   C   L++
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ---LSSKGCSPVLIT 451



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 174/367 (47%), Gaps = 48/367 (13%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  + +L+   C++  +  A  + DE   RG     V++N L+NG CK   LDE  + 
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  SG +P+V T++ ++  +C   R  DAE LL +M  +G +P+ V F  LI+  C+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G +  A D      I+++M  +G  P+ ++Y  LL GFCKE  ++ A++  + M+ RG 
Sbjct: 357 KGLLGRAID------ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V +  +++  C+ GKV +A  +L ++   G  P   TY  VID   K G T    +
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 367 LLKEMRSD-----------------------------------GHLPAVETYNALMNGLC 391
           LL EMR+                                    G  P   T+N++M GLC
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
           K  Q   A   L  M++ G  P++ +Y IL+EG    G  ++  +L +E        C  
Sbjct: 531 KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNE-------LCNK 583

Query: 452 SLVSKSS 458
            L+ KSS
Sbjct: 584 GLMKKSS 590



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 155/293 (52%), Gaps = 9/293 (3%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           + ++ + G++++     +     G     +   TLI G C+     +  ++  ++EGSG 
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PDV TY+ +I+G CK   +++A  +L  M    ++P+ V + T++   C +G+      
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGK------ 219

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +K+A +++D M      PD ITYTIL++  C++  +  A+ +  EM  RG   D V +  
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++G C+ G++ EA + L +M   G +P+  T+ +++   C  G      +LL +M   G
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             P+V T+N L+N LC+ G L  A  +L+ M   G  P+ ++YN LL G CK 
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 114 LGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           LG  ++IL+    +G  P+   +N L+H  CKE K+  A    +    RG +   V++NT
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           ++   CK   +++   + + +   G  P + TY+ +I+GL K  +   A  LL EM  + 
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L P+ + +++L+ G  + G++D      EA K   E    G+ P+ +T+  ++ G CK  
Sbjct: 480 LKPDTITYSSLVGGLSREGKVD------EAIKFFHEFERMGIRPNAVTFNSIMLGLCKSR 533

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
             + A+D    MI RG + +  ++T LI G    G   EA  +L E+   GL
Sbjct: 534 QTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 3/128 (2%)

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +     L++V     +    R G++ E  + L  M+  G  PD    T +I  FC+ G T
Sbjct: 94  VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKT 153

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   ++L+ +   G +P V TYN +++G CK G++ NA  +LD M    V PD +TYN +
Sbjct: 154 RKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTI 210

Query: 422 LEGHCKHG 429
           L   C  G
Sbjct: 211 LRSLCDSG 218


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 32/387 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID +++        G   E++ +G +   Y+++  +  + KEG ++ A+ +FD     G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   A ++ +LI G+C+ KN+ +G+ L   M+   +    YTY  ++ G+C    LD A 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGR-----------------------------I 250
            ++ EM   G  PN VI+TTLI    +N R                             +
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             A  M EAR  + EM  NGL P+  TY   + G+ +  +  SA    KEM + G+  + 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V  T LI+ +C+ GKV+EA    R M+  G+  D  TYT++++   KN        + +E
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           MR  G  P V +Y  L+NG  K G ++ A+ + D M++ G+ P+ I YN+LL G C+ G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            E   +L  E   KGL  +   Y +++
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTII 704



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 209/450 (46%), Gaps = 26/450 (5%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H YS ++  L+  +    A+ L+H +VS                  G ++   + D  + 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVS-----------------HGINIKPYMYDCCIC 355

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           V    G ++ A   F  +        A+    LI+   R           +E+       
Sbjct: 356 VMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S Y +  ++  +C  G +  A  +  E    G     V + TLI    +     +  R+ 
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+  G+ PD++ Y++LI GL K  R+D+A   L EM E GL PN   +   I G+ + 
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE- 534

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                A +   A K V EM   G+ P+K+  T L++ +CK+G +  A    + M+ +GI 
Sbjct: 535 -----ASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGIL 589

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D   +T L++G  +  KV +AE + REM   G+ PD  +Y ++I+ F K G+ +    +
Sbjct: 590 GDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSI 649

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM  +G  P V  YN L+ G C+ G+++ A  LLD M   G+ P+ +TY  +++G+CK
Sbjct: 650 FDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCK 709

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            G+  +  +L  E   KGLV D   YT+LV
Sbjct: 710 SGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 194/412 (47%), Gaps = 72/412 (17%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V ++  L+    +  +  DA  V  E  ++G+      +N+LI G  KAK
Sbjct: 442 EMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE       M  +G++P+ +TY A I+G  + +    A+  + EM E G+ PN V+ T
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 239 TLIDGHCKNGRIDMA-------------GDMK----------------EARKIVDEMCTN 269
            LI+ +CK G++  A             GD K                +A +I  EM   
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ PD  +Y +L++GF K G+++ A  I  EM++ G+  + + +  L+ GFCR G++ +A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           + +L EM   GL P+  TY  +ID +CK+GD    FRL  EM+  G +P    Y  L++G
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 390 LCKHGQLKNA--------------------------------------NMLLDTMLDLGV 411
            C+   ++ A                                      N L+D   D   
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
            P+D+TYNI+++  CK GN E     F ++Q+   L+     YTSL++   K
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN-ANLMPTVITYTSLLNGYDK 852



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 192/361 (53%), Gaps = 8/361 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA + FR +R             LI+   +          + E+++ G +P+V ++N+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   C+ G+I+ A+ + DE   +GLH  AV++ T+I+G+CK+ +L E FRL   M+  G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD + Y+ L++G C+ N ++ A + +    ++G   +   F  LI+   K G+ ++  
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           ++    +++D        P+ +TY I++D  CKEG+LE+A ++  +M    +    + +T
Sbjct: 787 EV--LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS- 373
           +L++G+ + G+  E   +  E +  G++PD   Y+++I+ F K G T     L+ +M + 
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904

Query: 374 ----DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
               DG   ++ T  AL++G  K G+++ A  +++ M+ L  +PD  T   L+   C   
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISS 964

Query: 430 N 430
           N
Sbjct: 965 N 965



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 173/368 (47%), Gaps = 32/368 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y ++VL+  LCK  +++DA+ +  E    G+     +++ LI+G  K +N D  
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G+    Y Y   I  + KE  ++ A+ L   M   GL P    + +LI+G
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 244 HC--KNGR------IDM---------------------AGDMKEARKIVDEMCTNGLNPD 274
           +C  KN R      ++M                     +GD+  A  IV EM  +G  P+
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + YT L+  F +      A+ + KEM ++GI  D   + +LI G  +  ++ EA   L 
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM++ GLKP+  TY   I  + +  +  +  + +KEMR  G LP       L+N  CK G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           ++  A     +M+D G++ D  TY +L+ G  K+   +D +++  E   KG+  D   Y 
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYG 631

Query: 452 SLVSKSSK 459
            L++  SK
Sbjct: 632 VLINGFSK 639



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 150/352 (42%), Gaps = 53/352 (15%)

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V F  L +G+   + ++E   + S   G  + P +     L++ L + NRLD    +  
Sbjct: 151 GVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYK 210

Query: 224 EMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-----KEAR----------KIVDEMCT 268
            M ER +  +   +  LI  HC+ G + +  D+     KE R          K+ + M  
Sbjct: 211 GMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMIC 270

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG----- 323
            GL P K TY +L+DG CK   LE A  +  EM   G+ LDN  ++ LI G  +G     
Sbjct: 271 KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADA 330

Query: 324 ------------------------------GKVVEAERMLREMLKVGLKPDDATYTMVID 353
                                         G + +A+ +   M+  GL P    Y  +I+
Sbjct: 331 AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIE 390

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +C+  + + G+ LL EM+    + +  TY  ++ G+C  G L  A  ++  M+  G  P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450

Query: 414 DDITYNILLE---GHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           + + Y  L++    + + G+     K   E+G+  D  CY SL+   SK ++
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 204/412 (49%), Gaps = 18/412 (4%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +A+M + V+ G+ + A + +  +R    +         I    +T  P   L     + +
Sbjct: 115 NAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPE 174

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G   +   +  ++  L   G+   A+ +FDE   R L    V+FN L++  CK   + E
Sbjct: 175 LGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFE 234

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD---------DAELLLHEMCERGLTPN 233
             RL   +   G+ P+++T++  + GLC+E  LD         +AE  L +M   G  P+
Sbjct: 235 SERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPD 294

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           D+ + ++IDG+CK G +      ++A +++ +    G  PD+ TY  L++GFCK+GD + 
Sbjct: 295 DLTYNSIIDGYCKKGMV------QDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDR 348

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+ + K+ + +G+    V +  LI G  + G ++ A +++ EM + G  P+  TY +VI+
Sbjct: 349 AMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVIN 408

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G       L+ +  + G  P + TYN L++G CK  +L +A  +++ M   G+ P
Sbjct: 409 GLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTP 468

Query: 414 DDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           D ITYN LL G CK G  E   +  K   EKG   +   Y  +V    K ++
Sbjct: 469 DVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKK 520



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P  + +  L++  CK+G    A  VF +   +GL  + V +NTLI G  +   +   
Sbjct: 325 GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPA 384

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L + M  +G  P+++TY+ +INGLCK   + DA  L+ +   +G  P+   + TLIDG
Sbjct: 385 LQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDG 444

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK  ++D A +M      V+ M + G+ PD ITY  LL+G CK G  E  ++I K M +
Sbjct: 445 YCKQLKLDSATEM------VNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEE 498

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   + + +  ++   C+  KV EA  +L EM   GLKPD  ++  +   FCK GD   
Sbjct: 499 KGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDG 558

Query: 364 GFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            ++L + M     +     TYN +++   +   +  A  L   M + G  PD+ TY +++
Sbjct: 559 AYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVI 618

Query: 423 EGHCKHGN 430
           +G CK GN
Sbjct: 619 DGFCKMGN 626



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 171/326 (52%), Gaps = 9/326 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +  L    L    E+ + G  P+++ +N++++ LCK G + DA  + D+   +G
Sbjct: 371 LIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKG 430

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++NTLI+G+CK   LD    + + M   GM PDV TY+ L+NGLCK  + ++  
Sbjct: 431 CPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVM 490

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M E+G TPN + +  ++D  CK  +++      EA  ++ EM + GL PD +++ 
Sbjct: 491 EIFKAMEEKGCTPNIITYNIIVDSLCKAKKVN------EAVDLLGEMKSKGLKPDVVSFG 544

Query: 280 ILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
            L  GFCK GD++ A  + + M K+  +      +  ++S F     +  A ++   M  
Sbjct: 545 TLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKN 604

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G  PD+ TY +VID FCK G+   G++ L E      +P++ T+  ++N LC   ++  
Sbjct: 605 SGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHE 664

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEG 424
           A  ++  ML  G+VP+  T N + E 
Sbjct: 665 AVGIIHLMLQKGIVPE--TVNTIFEA 688



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 181/383 (47%), Gaps = 42/383 (10%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L     P V  FN L+H LCK+G + +++ +  +  KRG+     +FN  + G C+  
Sbjct: 206 EMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREG 265

Query: 179 NLDEGFRLKSVMEGS---------GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
            LD   R   V+E           G  PD  TY+++I+G CK+  + DA  +L +   +G
Sbjct: 266 ALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKG 325

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEAR 260
             P++  + +LI+G CK+G  D A                             G +  A 
Sbjct: 326 FKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPAL 385

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++++EM  NG  P+  TY ++++G CK G +  A  +  + I +G   D   +  LI G+
Sbjct: 386 QLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGY 445

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+  K+  A  M+  M   G+ PD  TY  +++  CK G ++    + K M   G  P +
Sbjct: 446 CKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNI 505

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDK 436
            TYN +++ LCK  ++  A  LL  M   G+ PD +++  L  G CK G+ +     F +
Sbjct: 506 ITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRR 565

Query: 437 LQSEKGLVSDYACYTSLVSKSSK 459
           ++ +  +    A Y  +VS  S+
Sbjct: 566 MEKQYDVCHTTATYNIIVSAFSE 588



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 177/375 (47%), Gaps = 43/375 (11%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           Y   PSV+  N +M+ L + G    A  V+     RG+ +   ++   I   CK      
Sbjct: 105 YNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYA 164

Query: 183 GFRLKSVMEGSG-----------------------------------MRPDVYTYSALIN 207
             RL   M   G                                   + PDV  ++ L++
Sbjct: 165 ALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVH 224

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---GDMKEARKIVD 264
            LCK+  + ++E LL ++ +RG+ PN   F   + G C+ G +D A     + EA + + 
Sbjct: 225 VLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLR 284

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G  PD +TY  ++DG+CK+G ++ A  + K+ + +G + D   + +LI+GFC+ G
Sbjct: 285 KMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDG 344

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
               A  + ++ L  GL+P    Y  +I    + G      +L+ EM  +G LP + TYN
Sbjct: 345 DPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYN 404

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH----GNPEDFDKLQSE 440
            ++NGLCK G + +A+ L+D  +  G  PD  TYN L++G+CK        E  +++ S+
Sbjct: 405 LVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQ 464

Query: 441 KGLVSDYACYTSLVS 455
            G+  D   Y +L++
Sbjct: 465 -GMTPDVITYNTLLN 478



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 5/244 (2%)

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
             S     G +    TY  ++  L      ++ E LL EM E     N ++    I+   
Sbjct: 27  FNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMREN--VNNALLEGAYIEAMK 84

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             GR    G ++EA    + M     +P   ++  +++   + G    A  +   M  RG
Sbjct: 85  NYGR---KGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRG 141

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           ++ D   +T  I  FC+  +   A R+LR M ++G   +   Y  V+     +G+     
Sbjct: 142 VQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHAR 201

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L  EM +    P V  +N L++ LCK G +  +  LL  +L  GV P+  T+NI ++G 
Sbjct: 202 ELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGL 261

Query: 426 CKHG 429
           C+ G
Sbjct: 262 CREG 265


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 167/317 (52%), Gaps = 9/317 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY+   L+  LC+ G+  DA  V       G      ++NTL+ G+C+  +LD  
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL   M    + PD YTY+ LI  LC   R+ DA  LL +M  RG  PN V +T L++ 
Sbjct: 131 RRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 187

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+N         ++A  ++DEM   G  P+ +TY ++++G C+EG ++ A ++   +  
Sbjct: 188 MCRNS------GFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPS 241

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V++T L+ G C   +  + E +  EM++    P++ T+ M+I  FC+ G  + 
Sbjct: 242 YGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVER 301

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L++M   G        N ++N +CK G++ +A  LL+ M   G  PD I+Y  +L+
Sbjct: 302 AIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLK 361

Query: 424 GHCKHGNPEDFDKLQSE 440
           G C+    +D  +L +E
Sbjct: 362 GLCRAERWDDAKELLNE 378



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 188/403 (46%), Gaps = 21/403 (5%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA---IQCFRLLRKHYFRI 92
           ++G  S A+      E  G+ +     + L+  Y   G LD A   I    +    Y   
Sbjct: 88  RRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYT 147

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
           P    R L DR    +     L    ++L  G  P+V  + VL+  +C+    + A  V 
Sbjct: 148 PL--IRVLCDRGRVAD----ALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVL 201

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           DE   +G     V++N +ING C+   +D+   L + +   G +PD  +Y+ L+ GLC  
Sbjct: 202 DEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCAS 261

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            R DD E L  EM E+   PN+V F  LI   C+ G ++       A +++++M  +G  
Sbjct: 262 KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVE------RAIQVLEQMTEHGCA 315

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            +     I+++  CK+G ++ A  +  +M   G   D +++T ++ G CR  +  +A+ +
Sbjct: 316 TNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKEL 375

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EM++    P++ T+   I   C+ G  +    L+++M   G    V TYNAL+NG C 
Sbjct: 376 LNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCV 435

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
            G + +A  L  +M      P+ ITY  LL G C   N E  D
Sbjct: 436 QGHIDSALELFRSM---PCKPNTITYTTLLTGLC---NAERLD 472



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 166/330 (50%), Gaps = 6/330 (1%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P  Y +  L+  LC  G++ DA  + D+  +RG     V++  L+   C+    ++   
Sbjct: 140 APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMA 199

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G  P++ TY+ +ING+C+E R+DDA  LL+ +   G  P+ V +TTL+ G C
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLC 259

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            + R D      +  ++  EM      P+++T+ +L+  FC+ G +E A+ + ++M + G
Sbjct: 260 ASKRWD------DVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG 313

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              +      +I+  C+ G+V +A ++L +M   G  PD  +YT V+   C+        
Sbjct: 314 CATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAK 373

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LL EM  +   P   T+N  +  LC+ G ++ A ML++ M + G     +TYN L+ G 
Sbjct: 374 ELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGF 433

Query: 426 CKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           C  G+ +   +L        +   YT+L++
Sbjct: 434 CVQGHIDSALELFRSMPCKPNTITYTTLLT 463



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 29/368 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+++    P+   F++L+   C+ G ++ A  V ++  + G        N +IN  C
Sbjct: 270 LFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSIC 329

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D+ F+L + M   G  PD  +Y+ ++ GLC+  R DDA+ LL+EM      PN+V
Sbjct: 330 KQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEV 389

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEA-------------RKIVDEMCTNG------------ 270
            F T I   C+ G I+ A  + E                +V+  C  G            
Sbjct: 390 TFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM 449

Query: 271 -LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P+ ITYT LL G C    L+ A ++  EM++     + V F  L+S FC+ G + EA
Sbjct: 450 PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEA 509

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++ +M++ G  P+  TY  ++D   K+  ++    LL  + S G  P V T+++++  
Sbjct: 510 IELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGI 569

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH---GNPEDFDKLQSEKGLVSD 446
           L K  +++ A  L   + D+G+ P  + YN +L G CK     N  DF       G + +
Sbjct: 570 LSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPN 629

Query: 447 YACYTSLV 454
            + Y  L+
Sbjct: 630 ESTYIILI 637



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 153/318 (48%), Gaps = 25/318 (7%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L++ M+R N P                P+   FN  +  LC++G I+ A M+ ++  + G
Sbjct: 375 LLNEMVRNNCP----------------PNEVTFNTFICILCQKGLIEQAIMLIEQMSEHG 418

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++N L+NG C   ++D    L   M     +P+  TY+ L+ GLC   RLD A 
Sbjct: 419 CTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDGAA 475

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ EM      PN V F  L+   C+ G ++      EA ++V++M  +G  P+ ITY 
Sbjct: 476 ELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLE------EAIELVEQMMEHGCTPNLITYN 529

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            LLDG  K+   E AL++   ++ +G+  D + F+++I    +  ++ EA ++   +  +
Sbjct: 530 TLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDI 589

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P    Y  ++   CK  +          M S+G +P   TY  L+ GL   G LK A
Sbjct: 590 GMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649

Query: 400 NMLLDTMLDLGVVPDDIT 417
             LL  +   GV+  ++T
Sbjct: 650 QDLLSVLCSRGVLNKNLT 667



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 184/402 (45%), Gaps = 12/402 (2%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRK 87
           LL  + + K       LFA ++E     +P  V  D L+  +   G ++ AIQ    + +
Sbjct: 254 LLKGLCASKRWDDVEELFAEMMEK--NCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTE 311

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           H        C  +I+ + +            ++  YG +P    +  ++  LC+  +  D
Sbjct: 312 HGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDD 371

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A+ + +E  +       V+FNT I   C+   +++   L   M   G    V TY+AL+N
Sbjct: 372 AKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVN 431

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G C +  +D A  L   M      PN + +TTL+ G C   R+D A ++      V EM 
Sbjct: 432 GFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAEL------VAEML 482

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
                P+ +T+ +L+  FC++G LE A+++ ++M++ G   + + +  L+ G  +     
Sbjct: 483 RGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSE 542

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A  +L  ++  G+ PD  T++ +I    K    +   +L   ++  G  P    YN ++
Sbjct: 543 DALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKIL 602

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            GLCK  ++ NA      M+  G +P++ TY IL+EG    G
Sbjct: 603 LGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEG 644



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 35/225 (15%)

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            R D+AG +   R +      +G  PD    T L+   C+ G    A  + +     G  
Sbjct: 52  AREDLAGAV---RLVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSP 108

Query: 308 LDNVAFTALISGFCR--------------------------------GGKVVEAERMLRE 335
           +D  A+  L++G+CR                                 G+V +A  +L +
Sbjct: 109 VDVFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDD 168

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML+ G +P+  TYT++++  C+N   +    +L EMR+ G  P + TYN ++NG+C+ G+
Sbjct: 169 MLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR 228

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           + +A  LL+ +   G  PD ++Y  LL+G C     +D ++L +E
Sbjct: 229 VDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAE 273



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 360 DTKTGFRLLKEMRS-DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           D     RL++   S DG  P V     L+  LC+ G+  +A  +L      G   D   Y
Sbjct: 55  DLAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAY 114

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
           N L+ G+C++G+ +   +L     +  D   YT L+
Sbjct: 115 NTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLI 150


>gi|224056475|ref|XP_002298874.1| predicted protein [Populus trichocarpa]
 gi|222846132|gb|EEE83679.1| predicted protein [Populus trichocarpa]
          Length = 948

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 173/350 (49%), Gaps = 41/350 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P+ + +N L++ L KE KI  A  VF+E     L    V++N LI+GHC   N ++  R
Sbjct: 77  APNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGNFEQALR 136

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L  VME  G+RPD   Y AL++GL K  + D A+ L+  +   G+      +T +IDG C
Sbjct: 137 LLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRAYTAMIDGLC 196

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G +D      E+ +++D M  +G +PD IT+++L++GFCK G +++A ++  +M K G
Sbjct: 197 KHGLLD------ESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKAG 250

Query: 306 IELDNVAFT-----------------------------------ALISGFCRGGKVVEAE 330
           +  + V +                                     LIS  CR G+V EAE
Sbjct: 251 LAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVAEAE 310

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
             +R M  + L P+  T+  +I+ +   GD    F +  EM   GH P+  TY +L+ GL
Sbjct: 311 DFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGHCPSHFTYGSLLKGL 370

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           CK G L+ A  LL  +  +    D   YN +L   CK G   D   L  E
Sbjct: 371 CKGGNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRGKLSDAVALFGE 420



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 164/337 (48%), Gaps = 41/337 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P++  +N +++  CK+G+ K A  + D    +G+ A   ++N LI+  CK     +G
Sbjct: 5   GYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKG 64

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           + L   M    + P+ +TY+ LINGL KE ++  A  + +EM    L+PN V +  LIDG
Sbjct: 65  YLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDG 124

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI--------------------------- 276
           HC        G+ ++A +++D M   GL PD++                           
Sbjct: 125 HCD------CGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRM 178

Query: 277 --------TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
                    YT ++DG CK G L+ +L +   M K G   D + F+ LI+GFC+ GK+  
Sbjct: 179 SGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKN 238

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ ++ +M K GL P+   Y  +I   CK GD    FR    M   GH       N L++
Sbjct: 239 AKEVICKMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLIS 298

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LC+ G++  A   +  M  + + P+ IT++ ++ G+
Sbjct: 299 SLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGY 335



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 134/273 (49%), Gaps = 9/273 (3%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           MEGSG  P + TY+ ++N  CK+ R   A  L+  M  +G+  +   +  LID  CKN R
Sbjct: 1   MEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNR 60

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +   ++ +M    + P++ TY  L++G  KE  +  A  +  EM+   +  +
Sbjct: 61  ------SAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPN 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  LI G C  G   +A R+L  M   GL+PD+  Y  ++    K         L++
Sbjct: 115 RVTYNILIDGHCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLME 174

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +R  G +     Y A+++GLCKHG L  +  LLD M   G  PD IT+++L+ G CK G
Sbjct: 175 RIRMSGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAG 234

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
             ++  ++     + GL  +Y  Y +L+  S K
Sbjct: 235 KIKNAKEVICKMFKAGLAPNYVIYATLIYNSCK 267



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 30/352 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ PS + +  L+  LCK G +++A+ +  +            +NT+++  CK  
Sbjct: 350 EMIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRG 409

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIF 237
            L +   L   M    + PD +TY+ ++ GL ++ ++  A L   +   RG L+PN V++
Sbjct: 410 KLSDAVALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMY 469

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
           T+L DG  K G+ + A                             G M++  K+  +M +
Sbjct: 470 TSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQS 529

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             L P   TY ILL G+ K+ DL         M + GI  D +   ++I G C+ G +  
Sbjct: 530 GSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDV 589

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
             +ML++M+      D  T  M+I   C+       F LL      G +P V TYNA+  
Sbjct: 590 GFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNAIFT 649

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           GL +   L+ +++LL  ML+ G+ P    Y  L+ G C+ G+ +   +L+ E
Sbjct: 650 GLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDE 701



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 153/314 (48%), Gaps = 7/314 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y  +   G+    ++ NVL+  LC+ G++ +A+          L   +++F+ +ING+  
Sbjct: 278 YATMTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGI 337

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +  + F +   M   G  P  +TY +L+ GLCK   L +A+ LL+++       +  I
Sbjct: 338 LGDALKAFSMFDEMIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNI 397

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T++   CK G++       +A  +  EM    + PD  TY I+L G  ++G +  AL 
Sbjct: 398 YNTILSETCKRGKLS------DAVALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALL 451

Query: 297 IRKEMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
             ++ + RG +  + V +T+L  G  + G+   A  +  EM   G+ PD      V+D +
Sbjct: 452 FFEKALARGTLSPNKVMYTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGY 511

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            + G  +   +L  +M+S    P++ TYN L++G  K   L   +   + M  +G+ PD 
Sbjct: 512 SRMGKMEKVEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDK 571

Query: 416 ITYNILLEGHCKHG 429
           +T + ++ G CK G
Sbjct: 572 LTCHSIILGLCKSG 585



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 174/414 (42%), Gaps = 67/414 (16%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL-DALMIV 68
           +  MV F V    H+ A  L  L  S+KG    A LF      RGT  P  V+  +L   
Sbjct: 418 FGEMVQFNVLPDSHTYAIILAGL--SRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDG 475

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
              +G  + A   +  +              ++D   R          ++++     +PS
Sbjct: 476 LFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPS 535

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-- 186
           +  +N+L+H   K+  +      ++   + G+    ++ +++I G CK+  LD GF++  
Sbjct: 536 LATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGFKMLK 595

Query: 187 KSVMEGS---------------------------------GMRPDVYTYSALINGLCKEN 213
           K +ME +                                 G+ PDV TY+A+  GL + +
Sbjct: 596 KMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNAIFTGLNRAS 655

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------- 253
            L ++ LLLH+M ERG+TP    + +LI+G C+ G I  A                    
Sbjct: 656 ALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAES 715

Query: 254 ---------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                    G ++EA  ++D M    L P   T+T L+   CK+  L  AL +R +M   
Sbjct: 716 AMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEALKLRGKMALY 775

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           G++LD VA+  LISG C  G  + A  +  EM + GL P+  TY  +ID    N
Sbjct: 776 GVKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGLWPNTTTYCTLIDAISTN 829



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 163/362 (45%), Gaps = 9/362 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + +          Y E+   G +P     N ++    + GK++  + +F +     
Sbjct: 472 LFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGS 531

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  +  ++N L++G+ K K+L +  +  ++M   G+ PD  T  ++I GLCK   LD   
Sbjct: 532 LTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGF 591

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L +M       + +    LI   C+  ++  A D+   + ++      G+ PD  TY 
Sbjct: 592 KMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLL------GIIPDVNTYN 645

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +  G  +   L  +  +  +M++RGI   +  + +LI+G CR G +  A R+  EM  +
Sbjct: 646 AIFTGLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAI 705

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+   D   + ++    + G  +    +L  M     +P V T+  LM+ LCK  +L  A
Sbjct: 706 GVSSWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEA 765

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-EDFDKLQS--EKGLVSDYACYTSLVSK 456
             L   M   GV  D + YN+L+ G C  G+    F+  +   E+GL  +   Y +L+  
Sbjct: 766 LKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGLWPNTTTYCTLIDA 825

Query: 457 SS 458
            S
Sbjct: 826 IS 827



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 168/373 (45%), Gaps = 13/373 (3%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  LI  + R         F   +     +P+   F+ +++     G    A  +FDE  
Sbjct: 293 CNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDEMI 352

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K G   +  ++ +L+ G CK  NL E  +L   +       D   Y+ +++  CK  +L 
Sbjct: 353 KLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRGKLS 412

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDK 275
           DA  L  EM +  + P+   +  ++ G  + G+      M  A    ++    G L+P+K
Sbjct: 413 DAVALFGEMVQFNVLPDSHTYAIILAGLSRKGK------MVPALLFFEKALARGTLSPNK 466

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           + YT L DG  K G   +A  I +EM  +GI  D +A  A++ G+ R GK+ + E++  +
Sbjct: 467 VMYTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIK 526

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M    L P  ATY +++  + K  D     +    M   G  P   T ++++ GLCK G 
Sbjct: 527 MQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGM 586

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHC---KHGNPEDFDKLQSEKGLVSDYACYTS 452
           L     +L  M+    + D +T N+L+   C   K G   D   +++  G++ D   Y +
Sbjct: 587 LDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNA 646

Query: 453 L---VSKSSKYRQ 462
           +   ++++S  R+
Sbjct: 647 IFTGLNRASALRE 659



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N +   L +   ++++ ++  +  +RG+  T+  + +LING C+  ++   
Sbjct: 636 GIIPDVNTYNAIFTGLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGA 695

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRLK  ME  G+       SA++ GL +  ++++A L+L  M ++ L P    FTTL+  
Sbjct: 696 FRLKDEMEAIGVSSWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHM 755

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK  ++       EA K+  +M   G+  D + Y +L+ G C +GD  +A ++ +EM +
Sbjct: 756 LCKKAKLS------EALKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNLYEEMKE 809

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERML 333
           RG+  +   +  LI         VE ER+L
Sbjct: 810 RGLWPNTTTYCTLIDAISTNEGEVE-ERLL 838



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  F  LMH LCK+ K+ +A  +  +    G+    V++N LI+G C   +    F L
Sbjct: 744 PTVATFTTLMHMLCKKAKLSEALKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNL 803

Query: 187 KSVMEGSGMRPDVYTYSALINGLC-KENRLDDAELLLHEMCER 228
              M+  G+ P+  TY  LI+ +   E  +++  L+  E  E+
Sbjct: 804 YEEMKERGLWPNTTTYCTLIDAISTNEGEVEERLLVYLEQFEK 846


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   N LM  LCK GKIK+A+ VFD    +G +    S+  ++NG+     L +   L
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G+ PD+YT++ LI        LD A ++ +EM + G+ P+ V + T+I   C+
Sbjct: 384 FDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+
Sbjct: 444 IGKMD------DAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V F ++I+  C+ G+V++A+ +    + VGL PD   Y M++D +C  G  +   R
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 557

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M S G  P V  Y  L+NG CK G++     L   ML  G+ P  I YNI+++G  
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 617

Query: 427 KHG 429
           + G
Sbjct: 618 EAG 620



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 173/343 (50%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT--AVSFNTLINGHCKAKN 179
           + G  P V+ +N+L+  LC +GK   A  +     + G   +   V++NT+I+G  K  +
Sbjct: 177 ELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGD 236

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD+ TYS++++ LCK   +D AE  L +M  +G+ P++  +  
Sbjct: 237 VNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNN 296

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM    + PD +    L+   CK G ++ A D+  
Sbjct: 297 LIYGYSSTGQ------WKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFD 350

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D  ++T +++G+   G +V+   +   ML  G+ PD  T+ ++I  +   G
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCG 410

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GVVPD   Y+
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYH 470

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L SE    G+  D   + S+++   K
Sbjct: 471 CLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCK 513



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P +Y FNVL+      G +  A ++F+E    G+    V++ T+I   C+   +D+ 
Sbjct: 391 GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDA 450

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
               + M   G+ PD Y Y  LI G C    L  A+ L+ E+   G+  + V F ++I+ 
Sbjct: 451 MEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINN 510

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR+       +A+ I D     GL+PD + Y +L+DG+C  G +E AL +   M+ 
Sbjct: 511 LCKLGRV------MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS 564

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GIE + V +  L++G+C+ G++ E   + REML+ G+KP    Y ++ID   + G T  
Sbjct: 565 AGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVP 624

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                 EM   G      TY+ ++ GL K+     A  L   +  + V  D IT N ++ 
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 684

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G  +    E+   L    S  GLV     Y+ +++
Sbjct: 685 GMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMIT 719



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 178/373 (47%), Gaps = 46/373 (12%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +N ++    KEG +  A  +F E  +RG+    V+++++++  CKA+ +D+   
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G+ PD +TY+ LI G     +  +A  +  EM  + + P+ V   TL+   C
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG---------------- 289
           K G+I      KEAR + D M   G NPD  +YTI+L+G+  +G                
Sbjct: 338 KYGKI------KEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG 391

Query: 290 -------------------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                               L+ A+ I  EM   G++   V +  +I+  CR GK+ +A 
Sbjct: 392 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM 451

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
               +M+  G+ PD   Y  +I  FC +G       L+ E+ ++G    +  + +++N L
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNL 511

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           CK G++ +A  + D  +++G+ PD + YN+L++G+C  G  E     FD + S  G+  +
Sbjct: 512 CKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS-AGIEPN 570

Query: 447 YACYTSLVSKSSK 459
              Y +LV+   K
Sbjct: 571 VVGYGTLVNGYCK 583



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 212/433 (48%), Gaps = 25/433 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           A +T++  L  +    +ARD+   +  K   G +  +F+  +   G    G ++D   + 
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMK---GQNPDVFSYTIMLNGYATKGCLVDMTDLF 384

Query: 69  YVDLG-FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            + LG  +   I  F +L K Y       C  L   M+  N          E+ D+G  P
Sbjct: 385 DLMLGDGIAPDIYTFNVLIKAY-----ANCGMLDKAMIIFN----------EMRDHGVKP 429

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            V  +  ++  LC+ GK+ DA   F++   +G+     +++ LI G C   +L +   L 
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELI 489

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S +  +GMR D+  + ++IN LCK  R+ DA+ +       GL P+ V++  L+DG+C  
Sbjct: 490 SEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC-- 547

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
               + G M++A ++ D M + G+ P+ + Y  L++G+CK G ++  L + +EM+++GI+
Sbjct: 548 ----LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 603

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
              + +  +I G    G+ V A+    EM + G+  +  TY++V+    KN        L
Sbjct: 604 PSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFL 663

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            KE+R+      + T N ++ G+ +  +++ A  L  ++   G+VP  +TY+I++    K
Sbjct: 664 FKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLK 723

Query: 428 HGNPEDFDKLQSE 440
            G  E+ + + S 
Sbjct: 724 EGLVEEAEDMFSS 736



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 150/303 (49%), Gaps = 8/303 (2%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R D    S L+ G C+  R 
Sbjct: 105 GPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRT 164

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   +  L+   C  G+   A D+         +C+    PD
Sbjct: 165 DEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCS----PD 220

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  ++DGF KEGD+  A D+ KEM++RGI  D V +++++   C+   + +AE  LR
Sbjct: 221 VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLR 280

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+  G+ PD+ TY  +I  +   G  K   R+ KEMR    LP V   N LM  LCK+G
Sbjct: 281 QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYG 340

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
           ++K A  + DTM   G  PD  +Y I+L G+   G   +  D   L    G+  D   + 
Sbjct: 341 KIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFN 400

Query: 452 SLV 454
            L+
Sbjct: 401 VLI 403



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 9/307 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ Y + +LM    +  + + A   F +  + GL   A+  + L+ G C+AK  DE   
Sbjct: 110 SPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALD 169

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++Y+ L+  LC + +   A+ LL  M E G   +P+ V + T+ID
Sbjct: 170 ILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVID 229

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  K G ++ A D+        EM   G+ PD +TY+ ++   CK   ++ A    ++M+
Sbjct: 230 GFFKEGDVNKACDL------FKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMV 283

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+  DN  +  LI G+   G+  EA R+ +EM +  + PD      ++   CK G  K
Sbjct: 284 NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK 343

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +Y  ++NG    G L +   L D ML  G+ PD  T+N+L+
Sbjct: 344 EARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLI 403

Query: 423 EGHCKHG 429
           + +   G
Sbjct: 404 KAYANCG 410



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EI++ G    +  F  +++ LCK G++ DAQ +FD     GLH  AV +N L++G+C   
Sbjct: 491 EIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 550

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++  R+   M  +G+ P+V  Y  L+NG CK  R+D+   L  EM ++G+ P+ +++ 
Sbjct: 551 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 610

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG  + GR         A+    EM  +G+  +K TY+I+L G  K    + A+ + 
Sbjct: 611 IIIDGLFEAGRT------VPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLF 664

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KE+    +++D +    +I+G  +  +V EA+ +   + + GL P   TY+++I    K 
Sbjct: 665 KELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKE 724

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           G  +    +   M++ G  P     N ++  L K  ++  A   L  +
Sbjct: 725 GLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 772



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 29/277 (10%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           ++ G  P   V+N+LM   C  GK++ A  VFD     G+    V + TL+NG+CK   +
Sbjct: 528 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI 587

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEG  L   M   G++P    Y+ +I+GL +  R   A++  HEM E G+  N   ++ +
Sbjct: 588 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIV 647

Query: 241 IDGHCKNGRID------------------------MAG-----DMKEARKIVDEMCTNGL 271
           + G  KN   D                        +AG      ++EA+ +   +  +GL
Sbjct: 648 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 707

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  +TY+I++    KEG +E A D+   M   G E D+     ++    +  ++V A  
Sbjct: 708 VPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGA 767

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
            L ++ +     +  T  +++D F   G  +   R L
Sbjct: 768 YLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 804


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 205/434 (47%), Gaps = 61/434 (14%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDA 64
           ++ AYS++V  L      ++AR + H          ++SLF  ++  RG H P  L+   
Sbjct: 114 SMQAYSSLVRAL------AKARRVDH----------ASSLFDEMI--RGGHHPDRLMFYE 155

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L++     G + DA + F+ + KH       GC+                          
Sbjct: 156 LILGLCQAGKVKDASERFKQMPKH-------GCQ-------------------------- 182

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P+V V+NVL+H LC  G+++ A  +F E          V++NTL++  CKA+ ++EG 
Sbjct: 183 --PNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +L   M  +G  P+V T+S LI+GLC+   L+ A  +   M E G  PN   +TTLI G 
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK- 303
           C+      A  + +AR++ ++M    + PD + Y  L+ G+CK G ++ A  + +EM   
Sbjct: 301 CR------AEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 354

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++   V F  LI GFC+ GK+  A  ++ EM   GL  D  TY ++I    +      
Sbjct: 355 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDE 414

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + K+MR    L    +  + + GLCK G +  A  + +     G VP+  T+ IL E
Sbjct: 415 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 474

Query: 424 GHCKHGNPEDFDKL 437
              K G  ED  KL
Sbjct: 475 SLIKLGRVEDAQKL 488



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 179/338 (52%), Gaps = 11/338 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D   + +V+ ++ ++  L KE K +++  V +E    G +    +FN ++ G  ++ N++
Sbjct: 3   DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNME 62

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   +   M  SG +PD  +Y  LI+GL K  +LD++  +L EM  RG TP+   +++L+
Sbjct: 63  KAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
               K  R+D       A  + DEM   G +PD++ +  L+ G C+ G ++ A +  K+M
Sbjct: 123 RALAKARRVD------HASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQM 176

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            K G + +   +  L+ G C  G++ +A  +  EM      PD  TY  ++D  CK    
Sbjct: 177 PKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRV 236

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           + G +L + MR+ G++P V T++ L++GLC+ G+L+ A  +  +ML+ G  P+  TY  L
Sbjct: 237 EEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTL 296

Query: 422 LEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVS 455
           + G C+        E F+K+ ++  +  D   Y SL++
Sbjct: 297 ISGLCRAEKVIQARELFEKM-TQACIPPDAVAYNSLIA 333



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 163/341 (47%), Gaps = 6/341 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I  +++   P  +     E++  G +P V+ FN +M    +   ++ A+ V+    + G
Sbjct: 16  IIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 75

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                VS++ LI+G  K   LDE  ++ S M   G  P +  YS+L+  L K  R+D A 
Sbjct: 76  YKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHAS 135

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM   G  P+ ++F  LI G C+      AG +K+A +   +M  +G  P+   Y 
Sbjct: 136 SLFDEMIRGGHHPDRLMFYELILGLCQ------AGKVKDASERFKQMPKHGCQPNVPVYN 189

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           +LL G C  G LE A  +  EM       D V +  L+   C+  +V E  ++   M   
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P+  T++ +I   C+ G+ +    +   M   G  P   TY  L++GLC+  ++  A
Sbjct: 250 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQA 309

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             L + M    + PD + YN L+ G+CK G+ ++ +KL  E
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYRE 350



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 132/251 (52%), Gaps = 7/251 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           GY P+V  F+ L+H LC+ G+++ A  VF    + G      ++ TLI+G C+A+ + + 
Sbjct: 250 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQA 309

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLID 242
             L   M  + + PD   Y++LI G CK   +D+AE L  EM    GL P  V F TLID
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 369

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G CK G++  A ++      V EM T GL  D  TY IL+ G  +   L+ AL++ K+M 
Sbjct: 370 GFCKLGKLGRANEL------VAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMR 423

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           ++   LD V+  + + G C+ G + +A  +     K G  P+  T+ ++ +   K G  +
Sbjct: 424 EKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVE 483

Query: 363 TGFRLLKEMRS 373
              +L++  ++
Sbjct: 484 DAQKLMEPAKA 494



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 11/269 (4%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M    +  +V+TYS++I  L KE + +++  +L EM   G  P+   F  ++ G  +   
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFAR--- 57

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
              + +M++AR++   M  +G  PD ++Y IL+ G  K G L+ +L I  EM+ RG    
Sbjct: 58  ---SNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPS 114

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             A+++L+    +  +V  A  +  EM++ G  PD   +  +I   C+ G  K      K
Sbjct: 115 MQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFK 174

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P V  YN L++GLC  GQL+ AN L   M      PD +TYN LL+  CK  
Sbjct: 175 QMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKAR 234

Query: 430 NPED----FDKLQSEKGLVSDYACYTSLV 454
             E+    F+ +++  G V +   +++L+
Sbjct: 235 RVEEGCKLFEAMRA-AGYVPNVITFSTLI 262



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++  FN L+   CK GK+  A  +  E G +GL A + ++  LI G  +A  LDE 
Sbjct: 356 GLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEA 415

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M       D  +  + + GLCK   +D A  +     + G  PN   F  L + 
Sbjct: 416 LEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSES 475

Query: 244 HCKNGRIDMAGDMKEARKIVD 264
             K GR++ A  + E  K  D
Sbjct: 476 LIKLGRVEDAQKLMEPAKARD 496


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 167/341 (48%), Gaps = 26/341 (7%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
               + +IL  GY P+      L+   C   K+K+A    D     G H   VS+ TLIN
Sbjct: 125 AFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLIN 184

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK        ++   +EG  +  DV  YS +I+GLCK+  ++DA  L  EM  + ++P
Sbjct: 185 GLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISP 244

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
             V   +LI G+C      + G  KEA  ++ EM    +NPD  T+ IL+D  CKEG ++
Sbjct: 245 TVVTLNSLIYGYC------IVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIK 298

Query: 293 SALDIRKEMIKRGIELDNVAFTAL--------------------ISGFCRGGKVVEAERM 332
            A      M+K G+  D V +++L                    I+GFC+   V +A  +
Sbjct: 299 EAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSL 358

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
             EM    + PD  TY  +ID  CK+G     + L+ EMR  G    + TYN+L++ LCK
Sbjct: 359 FYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCK 418

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +  +  A  L+  + D G+  D  TYNIL++G CK G  +D
Sbjct: 419 NHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKD 459



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 157/300 (52%), Gaps = 21/300 (7%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
             G   E++    +P VY FN+L+  LCKEGKIK+A+       K G+    V++++L++
Sbjct: 265 AFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMD 324

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C    +++                 + YS +ING CK   +D A  L +EM  R + P
Sbjct: 325 GYCLVNEVNKA---------------KHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAP 369

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + +LIDG CK+GRI  A ++      VDEM  +G   D ITY  L+D  CK   ++
Sbjct: 370 DTVTYNSLIDGLCKSGRISYAWEL------VDEMRDSGQPADIITYNSLIDALCKNHHVD 423

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ + K++  +GI+LD   +  LI G C+ G++ +A+ + +++L  G      TYT++I
Sbjct: 424 KAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMI 483

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  C  G       LL +M  +G +P   T   ++  L ++ + + A  LL  M+  G++
Sbjct: 484 NGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDKNERAEKLLREMIARGLL 543



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 29/352 (8%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +PSV  F  ++  L K         +F +    G+    VS + LIN +C    +   F 
Sbjct: 68  APSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFS 127

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + + +   G  P+  T + L+ G C  +++ +A      +   G   N V + TLI+G C
Sbjct: 128 IFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLC 187

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K       G+ + A +++ ++    ++ D + Y+ ++DG CK+  +  A ++  EMI + 
Sbjct: 188 K------IGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKR 241

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I    V   +LI G+C  G+  EA  +LREM+   + PD  T+ +++D  CK G  K   
Sbjct: 242 ISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAK 301

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN-------------MLLDTMLDL--- 409
             +  M  +G +P V TY++LM+G C   ++  A               ++D  L L   
Sbjct: 302 SGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYE 361

Query: 410 ----GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
                + PD +TYN L++G CK G      +L  E    G  +D   Y SL+
Sbjct: 362 MRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLI 413


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 173/361 (47%), Gaps = 31/361 (8%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C C +D + R N     L  +   +     P+ + + +L+      G +  A  + +E  
Sbjct: 25  CNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMK 84

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
             G    AV   TL+ G C A  + E       M      PDV TY+AL++ LCK  + D
Sbjct: 85  SSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGKFD 143

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE------------------ 258
           +A+ +L EM  +G  P+ V F+TLIDG CK G  + A  + E                  
Sbjct: 144 EAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETII 203

Query: 259 ------------ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                       A K++  +   G  P  + + ++++GFCK  DL+SA  + + MI++G 
Sbjct: 204 QRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGC 263

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   FT LI+G C+  +V EA+++L +M+  G  P+  TY+ VI+  CK G     + 
Sbjct: 264 VPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYE 323

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L + M      P V T+N L++GLCK  +++ A  L   M + G  PD ITYN L++G C
Sbjct: 324 LFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLC 383

Query: 427 K 427
           K
Sbjct: 384 K 384



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 209/468 (44%), Gaps = 90/468 (19%)

Query: 37  KGMGSSASLFASI-----LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91
           +G  S+  L  +I     +++ G     +V   LM    D G + +A++ FR + K    
Sbjct: 65  RGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD--- 121

Query: 92  IPARGCRCLIDRMMRTNLPTV---------TLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
                  C  D M  T L              G   E++  G +P    F+ L+  LCK 
Sbjct: 122 -------CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKF 174

Query: 143 GKIKDAQMVFDEFGKRGL------------------------------------HATAVS 166
           G  + A  V ++  +RG+                                      T + 
Sbjct: 175 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 234

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           FN +ING CKAK+LD  ++L  VM   G  P+V+T++ LI GLCK NR+ +A+ LL +M 
Sbjct: 235 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 294

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------K 257
             G +PN V ++T+I+G CK G++D A ++                             +
Sbjct: 295 MGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 354

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN-VAFTAL 316
           EAR++   M   G  PD ITY  L+DG CK   ++ A  + + + + G+   N V ++ L
Sbjct: 355 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 414

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
             G+   G++ +A R+   ++  G  PD ATYT +I  +CK         L++EM S G 
Sbjct: 415 FHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF 474

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            P V T +A++ GL +    + A  L D+M   G   D + YN+++EG
Sbjct: 475 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 522



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 222/462 (48%), Gaps = 33/462 (7%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI-V 68
           +ST++  L       QA  +L  ++ ++GMG+S + F +I++        + L + ++ V
Sbjct: 164 FSTLIDGLCKFGSEEQAFRVLEDVI-QRGMGNSDAAFETIIQRLCNKYNSVELASKVLGV 222

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-DYGYSP 127
            +  GF    +  F L+   + +         +D   +           LE++ + G  P
Sbjct: 223 VIAKGFTPTVLM-FNLVINGFCKAKD------LDSAYK----------LLEVMIEKGCVP 265

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V+ F +L+  LCK  ++ +AQ + ++    G     V+++T+ING CK   +D+ + L 
Sbjct: 266 NVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELF 325

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +ME     P+V T++ LI+GLCK  R+++A  L H M E G  P+ + + +LIDG CK+
Sbjct: 326 QLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKS 385

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            ++D      EA ++   +  +G++  + +TY+ L  G+   G +  A  I   ++ +G 
Sbjct: 386 FQVD------EAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 439

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T+LI  +C+  + VE   ++ EM   G  P   T + V+    +   T+   +
Sbjct: 440 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQ 499

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML---DLGVVPDDITYNILLE 423
           L   M + G       YN ++ G+ +  +   A  +L+ ++   D    P     + L+E
Sbjct: 500 LFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVE 559

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
             C+ G  +D  +L    SE+G  +  + Y  L+S  S+ ++
Sbjct: 560 SLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQR 601



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 39/385 (10%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +DDA + F+L+ +            LID + +          Y  + + G +P +  +
Sbjct: 316 GQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITY 375

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVME 191
           N L+  LCK  ++ +A  +F    + G+ A  AV+++TL +G+     + +  R+ S++ 
Sbjct: 376 NSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLV 435

Query: 192 GSGMRPDVYTYSALINGLCKENR-----------------------------------LD 216
             G  PD+ TY++LI   CK +R                                    +
Sbjct: 436 DKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTE 495

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L   M  RG T + +I+  +++G  +  + D A  + E  +++D+      NP   
Sbjct: 496 RAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLE--QVIDKR-DRKFNPSSS 552

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
               L++  C+ G  + A  +  +M +RG      ++  L+SG  R  +  EA ++   M
Sbjct: 553 AVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAM 612

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +  G  P+ +T  +VI   C        + L++ M   G  P +ET N L+ G CK G+ 
Sbjct: 613 VSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRA 672

Query: 397 KNANMLLDTMLDLGVVPDDITYNIL 421
             A  LL+ M + G+ P+D T+++L
Sbjct: 673 DLARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 1/158 (0%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+K TY IL+ GF   GDL+ A+ + +EM   G E + V  T L+ G C  G+VVEA   
Sbjct: 55  PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEH 114

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            R M K    PD  TYT ++   CK G       +L+EM + G  P   T++ L++GLCK
Sbjct: 115 FRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            G  + A  +L+ ++  G+   D  +  +++  C   N
Sbjct: 174 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN 211


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/479 (27%), Positives = 228/479 (47%), Gaps = 36/479 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------------T 52
           L  YST+++         +A ++L  +V++ GM      + S+++               
Sbjct: 45  LVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMV 104

Query: 53  RGTHLPGLVLD-----ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT 107
           R   L G+  D     AL+  + +   +D+A++ ++ +     R+ A     LI  + R 
Sbjct: 105 REMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRE 164

Query: 108 NLPTVTLGFYLEIL---DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
                    + E+    D  + P V  +  L+   CK G ++ A  +      R      
Sbjct: 165 RRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNV 224

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           V++++L++G CKA +LD+   L   M   G  P+V TY+ LI+GLC  +++D A LL+ E
Sbjct: 225 VTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDE 284

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M       + V +  L+DG+C+ GRI+      EA+++  EM      PD+ITYT L+ G
Sbjct: 285 MTATCCPADTVSYNALLDGYCRLGRIE------EAKQLFKEMAAKSCLPDRITYTCLVRG 338

Query: 285 FCKEGDLESALDIRKEM-IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           FC    LE A  + + M    GI+ D V ++ +++G+ R  + VEA   ++EM+   + P
Sbjct: 339 FCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAP 398

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +  TY+ +ID  CK G       +LK +      P V TY  ++ GLC   + + A  LL
Sbjct: 399 NAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLL 454

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           + M++  V P   T+N ++   C+ G+ ++  KL    +  GL      YT+L+   S+
Sbjct: 455 EEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 513



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 179/337 (53%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           +P+   +NV+++ LCK      A  V  E    + +    V+++T+ING CK   +D   
Sbjct: 6   APNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRAC 65

Query: 185 R-LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L+ ++   GM PDV TY+++++GLC++ ++D A  ++ EM  +G+ P+   F+ LI G
Sbjct: 66  EILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITG 125

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C   ++D      EA K+  E+ T+    D ++ + L+ G C+E  +  A ++ +EM  
Sbjct: 126 WCNARKVD------EALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEM 179

Query: 304 R---GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           R     + D V +TALI GFC+ G + +A +ML  M      P+  TY+ ++   CK GD
Sbjct: 180 REDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGD 239

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 L + M S G +P V TY  L++GLC   ++  A +L+D M       D ++YN 
Sbjct: 240 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNA 299

Query: 421 LLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           LL+G+C+ G  E+  +L  E   K  + D   YT LV
Sbjct: 300 LLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLV 336



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 173/348 (49%), Gaps = 34/348 (9%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           R L+D M  T  P  T+ +                N L+   C+ G+I++A+ +F E   
Sbjct: 279 RLLMDEMTATCCPADTVSY----------------NALLDGYCRLGRIEEAKQLFKEMAA 322

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEG-FRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +      +++  L+ G C A  L+E  F L+++   +G+ PDV TYS ++ G  +  R  
Sbjct: 323 KSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFV 382

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A   + EM  R + PN V +++LIDG CK GR++ A    E  K VD+       PD +
Sbjct: 383 EAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHA---MEVLKNVDK-------PDVV 432

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYTI+++G C     E AL + +EM+ + +E     F ++I   CR G + EA ++L  M
Sbjct: 433 TYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 492

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR-------SDGHLPAVETYNALMNG 389
              GL+P   TYT +++ F + G  +  + L + MR       S  +L   + ++AL+ G
Sbjct: 493 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRG 552

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           LCK  ++  A  +++ +      P +     +++G  + G  E+  KL
Sbjct: 553 LCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKL 600



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 169/403 (41%), Gaps = 91/403 (22%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSK-------------KGMGSSASLFASIL---ETR 53
           YS+++H L       QA DL   + SK              G+ ++  + A+ L   E  
Sbjct: 227 YSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 286

Query: 54  GTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
            T  P   +  +AL+  Y  LG +++A Q F+ +             CL DR+  T L  
Sbjct: 287 ATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAK---------SCLPDRITYTCLVR 337

Query: 112 --------VTLGFYLEILD--YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
                       F LE +    G  P V  +++++    +  +  +A     E   R + 
Sbjct: 338 GFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVA 397

Query: 162 ATAVSFNTLINGHCKAKNLDEGFR-LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
             AV++++LI+G CKA  ++     LK+V      +PDV TY+ +I GLC  +R ++A  
Sbjct: 398 PNAVTYSSLIDGLCKAGRVNHAMEVLKNVD-----KPDVVTYTIVIEGLCGTDRTEEALT 452

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           LL EM  + + P+   F ++I   C+       GDM EA K++  M  +GL P  +TYT 
Sbjct: 453 LLEEMVNKRVEPSVGTFNSVIGALCR------LGDMDEAWKLLVAMAAHGLEPGMVTYTT 506

Query: 281 LLDGF------------------------------------------CKEGDLESALDIR 298
           LL+GF                                          CK  +++ A+ + 
Sbjct: 507 LLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVV 566

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +E+  R  E       A++ G  R G+  EA +++  + KVGL
Sbjct: 567 EELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 200/391 (51%), Gaps = 17/391 (4%)

Query: 77  DAIQCFR----LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           D IQ F     ++R H    P      L+  + + N  +     Y ++   G SP ++  
Sbjct: 70  DVIQAFHFFDLMMRSHPIP-PISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTL 128

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH---CKAKNLDEGFRLKSV 189
           N+L + LC   ++ +         +RG     V++NTLI G    CK  + DE   +   
Sbjct: 129 NILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEE 188

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+  GM P+V +YS+L++G C   +L++++ L +EM ++G+ PN V F  LID  CK G+
Sbjct: 189 MKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGK 248

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           I   GD+  ARK+   M + G   ++I+YTIL++G+CK   +E A+++  EM + G   +
Sbjct: 249 I---GDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPN 305

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              ++ L++G  + GKV +A ++   M   G+  D   Y + +D  CKNG       L  
Sbjct: 306 VKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFN 365

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           E++S       E+Y+ L++GLCK G+++ A      +   G+ P+ +T NI++ G C+  
Sbjct: 366 ELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVE 425

Query: 430 NPED----FDKLQ--SEKGLVSDYACYTSLV 454
             +     F+K++   E G   D   Y +L+
Sbjct: 426 QVDKANILFEKMEKMEENGCTPDIITYNTLL 456



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 163/326 (50%), Gaps = 38/326 (11%)

Query: 120 ILDYGYSPSVYVFNVL---MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           IL  GY P +  +N L   ++ LCK G   +A+ +F+E   +G+    +S+++L++G C 
Sbjct: 151 ILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCC 210

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD---AELLLHEMCERGLTPN 233
           A  L+E  RL + M   G++P++  ++ LI+ LCKE ++ D   A  L   M  +G   N
Sbjct: 211 AGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHN 270

Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
           ++ +T LI+G+CK  +++ A                             G + +A K+  
Sbjct: 271 EISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFG 330

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
            M  +G++ D   Y I LDG CK G L  A+++  E+     +LD  +++ LI G C+ G
Sbjct: 331 VMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAG 390

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG---FRLLKEMRSDGHLPAVE 381
           KV  A    +++ + GL+P+  T  ++I  FC+          F  +++M  +G  P + 
Sbjct: 391 KVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDII 450

Query: 382 TYNALMNGLCKHGQLKNANMLLDTML 407
           TYN L+ G C+  +L+    LL  M 
Sbjct: 451 TYNTLLRGFCESNKLEEVVNLLHKMF 476



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 10/226 (4%)

Query: 86  RKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           RK +  +P++GC         LI+   +       +  Y E+   G  P+V  ++ L+  
Sbjct: 256 RKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG 315

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
           L + GK+ DA  +F      G+   +  +   ++G CK   L E   L + ++    + D
Sbjct: 316 LLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLD 375

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             +YS LI+GLCK  +++ A     ++ + GL PN V    +I G C+  ++D A  + E
Sbjct: 376 FESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFE 435

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
             + ++E   NG  PD ITY  LL GFC+   LE  +++  +M KR
Sbjct: 436 KMEKMEE---NGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 478



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
             L+   +  G + DA + F +++     + +      +D + +  +    +  + E+  
Sbjct: 310 STLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKS 369

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           Y +      ++ L+  LCK GK++ A   F +  + GL    V+ N +I+G C+ + +D+
Sbjct: 370 YNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDK 429

Query: 183 G---FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
               F     ME +G  PD+ TY+ L+ G C+ N+L++   LLH+M +R
Sbjct: 430 ANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 478


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 182/365 (49%), Gaps = 13/365 (3%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  +I  + +       L     ++  GY P +   ++L+++LCK  KI++AQ       
Sbjct: 52  CHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMN 111

Query: 157 K--RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKEN 213
           +      ++  S+N+L+N  CKAK + + F + S M     + PDV +YS LI+G CK +
Sbjct: 112 RTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKID 171

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            L  AE L  +M +    PN   +   ++G  + GRI       +A+ + +EM + G +P
Sbjct: 172 ELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRI------ADAQGVYEEMISAGCSP 225

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D ITY+ L+ GF      + A ++ + MI RG   + V +  L+ G C+  K  EA  + 
Sbjct: 226 DVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELF 285

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R+M++ G  PD  TYT ++  FC  G  +    +  EM S GH P V  YN L+ G  + 
Sbjct: 286 RKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRA 345

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           G+   A  L   M+     PD +++NI+++G  K    +D    F++++ + G   D   
Sbjct: 346 GKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVT 405

Query: 450 YTSLV 454
           Y SL+
Sbjct: 406 YNSLI 410



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 162/330 (49%), Gaps = 31/330 (9%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + S + +N L++ LCK  K+  A  +F     +R +    VS++ LI+G CK   L    
Sbjct: 118 ASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAE 177

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +L   M      P+V TY+A +NGL ++ R+ DA+ +  EM   G +P+ + ++TLI G 
Sbjct: 178 KLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGF 237

Query: 245 CKNGRIDMAGDM-----------------------------KEARKIVDEMCTNGLNPDK 275
               + D A ++                              EA ++  +M   G +PDK
Sbjct: 238 SLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDK 297

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +TYT LL GFC  G +E A+++  EM+ +G + D VA+  L+ GF R GK  EA ++ + 
Sbjct: 298 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQV 357

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHG 394
           M+    KPD  ++ ++ID   K         + + M  D G  P + TYN+L+ GLC   
Sbjct: 358 MVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQ 417

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +L  A  +   +  L + PD   +N+LLE 
Sbjct: 418 RLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 447



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 13/298 (4%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C ID + R          Y +++D    P+V  +N  ++ L ++G+I DAQ V++E    
Sbjct: 168 CKIDELGRAE------KLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISA 221

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G     ++++TLI+G   A+  D+   L   M   G RP+  TY+ L++GLCKE++ D+A
Sbjct: 222 GCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEA 281

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  +M ERG  P+ V +TTL+ G C  G+I+      +A ++ DEM + G +PD + Y
Sbjct: 282 HELFRKMVERGCDPDKVTYTTLLYGFCNVGKIE------QAVEVFDEMVSKGHDPDVVAY 335

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             LL GF + G    A  + + M+ R  + D V+   +I G  +  ++ +A  +   M +
Sbjct: 336 NCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQ 395

Query: 339 -VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
             G  PD  TY  +I   C         ++ KE+      P    +N L+  +   G 
Sbjct: 396 DHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAGH 453



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 145/329 (44%), Gaps = 40/329 (12%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY---TYSALINGLCKENRLDDAELL 221
           V++   + G CK+  +++ F     M+ S          T  ++I  LCK  R+D A  L
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSL 71

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA---------------RKIVDEM 266
           L  M +RG  P+    + LI+  CK  +I  A +  +                  +++ +
Sbjct: 72  LETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSL 131

Query: 267 C-----------------TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           C                    + PD ++Y+IL+DGFCK  +L  A  + K+MI      +
Sbjct: 132 CKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPN 191

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              + A ++G  R G++ +A+ +  EM+  G  PD  TY+ +I  F           L +
Sbjct: 192 VTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFE 251

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M S G  P   TYN L++GLCK  +   A+ L   M++ G  PD +TY  LL G C  G
Sbjct: 252 AMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVG 311

Query: 430 NPED----FDKLQSEKGLVSDYACYTSLV 454
             E     FD++ S KG   D   Y  L+
Sbjct: 312 KIEQAVEVFDEMVS-KGHDPDVVAYNCLL 339



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 9/236 (3%)

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N+V +T  + G CK+G+I+ A    EA + + E  ++   P   T   ++   CK G ++
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAF---EACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVD 66

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK-VGLKPDDA-TYTM 350
           SAL + + MIKRG   D    + LI+  C+  K+ EA+  L+ M + +  +     +Y  
Sbjct: 67  SALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNS 126

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGH-LPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           +++  CK       F +   M S+   +P V +Y+ L++G CK  +L  A  L   M+DL
Sbjct: 127 LLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
             VP+  TYN  L G  + G   D   +  E    G   D   Y++L+   S  R+
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARK 242



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 20/225 (8%)

Query: 79  IQCFRLLRKH------YFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGY 125
           I  F L RKH      +  + +RGCR       CL+  + + + P      + ++++ G 
Sbjct: 234 IHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGC 293

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P    +  L++  C  GKI+ A  VFDE   +G     V++N L+ G  +A    E  +
Sbjct: 294 DPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQ 353

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDGH 244
           L  VM     +PD  +++ +I+GL K  RLDDA  +   M +  G +P+ V + +LI G 
Sbjct: 354 LFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGL 413

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           C   R      + EA K+  E+    L+PD   + +LL+     G
Sbjct: 414 CGEQR------LSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 41/167 (24%)

Query: 302 IKRGIELDNVAFTALISGFCRGGKV---VEAERMLRE----------------------- 335
           ++    L+NVA+TA + G C+ GK+    EA R ++E                       
Sbjct: 3   VESKAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKA 62

Query: 336 ------------MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE-- 381
                       M+K G  PD AT++M+I+  CK    +     L+ M       A    
Sbjct: 63  GRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCF 122

Query: 382 TYNALMNGLCKHGQLKNANMLLDTML-DLGVVPDDITYNILLEGHCK 427
           +YN+L+N LCK  ++  A  +  TM+ +  VVPD ++Y+IL++G CK
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCK 169


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 9/317 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY+   L+  LC+ G+  DA  V       G      ++NTL+ G+C+   LD  
Sbjct: 69  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAA 128

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL + M    + PD YTY+ +I GLC   R+ DA  LL +M +RG  P+ V +T L++ 
Sbjct: 129 RRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEA 185

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      +    EA  ++DEM   G  P+ +TY ++++G C+EG ++ A +I   +  
Sbjct: 186 VCK------SSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSS 239

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V++T ++ G C   +  + + +  EM+     P++ T+ M++  FC+ G  + 
Sbjct: 240 YGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVER 299

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L++M   G  P     N ++N +CK G++ +A   L+ M   G  PD I+Y  +L 
Sbjct: 300 AIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLR 359

Query: 424 GHCKHGNPEDFDKLQSE 440
           G C+ G  E   +L  E
Sbjct: 360 GLCRAGRWEHAKELLPE 376



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 18/394 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA---IQCFRLLRKHYFRI 92
           ++G  S A+      E  G  +     + L+  Y   G LD A   I    +    Y   
Sbjct: 86  RRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYT 145

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
           P    R L DR    +     L    ++L  G  PSV  + VL+  +CK     +A  V 
Sbjct: 146 PI--IRGLCDRGRVGD----ALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVL 199

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           DE   +G     V++N +ING C+   +D+   + + +   G +PD+ +Y+ ++ GLC  
Sbjct: 200 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAA 259

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            R DD ++L  EM ++   PN+V F  L+   C+ G ++       A +++ +M  +G  
Sbjct: 260 RRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVE------RAIQVLQQMSQHGCT 313

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+     I+++  CK+G ++ A D    M   G   D +++T ++ G CR G+   A+ +
Sbjct: 314 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 373

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EM++    P++ T+   I   C+ G  +   +L++ M   G    + TYNAL++G C 
Sbjct: 374 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 433

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            G++ +A   L+   +L   P+ ITY  LL G C
Sbjct: 434 QGRVDSA---LELFNNLPCEPNTITYTTLLTGLC 464



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 165/333 (49%), Gaps = 14/333 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  Y +  ++  LC  G++ DA  + D+  +RG   + V++  L+   CK+    E   +
Sbjct: 139 PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNV 198

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  P++ TY+ +ING+C+E R+DDA+ +L+ +   G  P+ V +TT++ G C 
Sbjct: 199 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCA 258

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R D      + + +  EM      P+++T+ +L+  FC+ G +E A+ + ++M + G 
Sbjct: 259 ARRWD------DVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGC 312

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +      +I+  C+ G+V +A   L  M   G  PD  +YT V+   C+ G  +    
Sbjct: 313 TPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKE 372

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL EM      P   T+N  +  LC+ G ++ A  L++ M + G     +TYN L+ G C
Sbjct: 373 LLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFC 432

Query: 427 KHGNP----EDFDKLQSEKGLVSDYACYTSLVS 455
             G      E F+ L  E   ++    YT+L++
Sbjct: 433 VQGRVDSALELFNNLPCEPNTIT----YTTLLT 461



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 206/447 (46%), Gaps = 31/447 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+  + +Y+T++  L A +     + L   +V KK + +  +                  
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF----------------- 284

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D L+  +   G ++ AIQ  + + +H        C  +I+ + +         F   +  
Sbjct: 285 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 344

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           YG +P    +  ++  LC+ G+ + A+ +  E  ++      V+FNT I   C+   +++
Sbjct: 345 YGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 404

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLI 241
             +L  +M   G    + TY+AL++G C + R+D A EL  +  CE    PN + +TTL+
Sbjct: 405 AIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE----PNTITYTTLL 460

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C   R+D A ++      +  M       + +T+ +L+  FC++G +E A+++  +M
Sbjct: 461 TGLCHAERLDAAAEL------LAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQM 514

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G   + + F  L+ G  +     EA  +L  ++  G+  D  TY+ V+D   +   T
Sbjct: 515 MEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRT 574

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   ++L  ++  G  P V  YN ++  LCK  +   A      M+  G +P++ TY IL
Sbjct: 575 EEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIIL 634

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVS 445
           +EG    G  ++   + SE   KG++S
Sbjct: 635 IEGLAHEGLLKEARYVLSELYAKGVLS 661



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI-F 237
           +L E  RL       G  PDVY  + LI  LC+  R  DA  +L    E    P DV  +
Sbjct: 54  DLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTA-EASGAPVDVFAY 112

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            TL+ G+C+ GR+D       AR+++  M    + PD  TYT ++ G C  G +  AL +
Sbjct: 113 NTLVAGYCRYGRLD------AARRLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALAL 163

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +M++RG +   V +T L+   C+     EA  +L EM   G  P+  TY ++I+  C+
Sbjct: 164 LDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCR 223

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G       +L  + S G  P + +Y  ++ GLC   +  +  +L   M+D   VP+++T
Sbjct: 224 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 283

Query: 418 YNILLEGHCKHGNPE 432
           +++L+   C+ G  E
Sbjct: 284 FDMLVRFFCRGGMVE 298



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 9/226 (3%)

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           L +A  L+     RG  P+  + T LI   C+ GR        +A +++     +G   D
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRT------SDAARVLRTAEASGAPVD 108

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
              Y  L+ G+C+ G L++A   R+ +    +  D   +T +I G C  G+V +A  +L 
Sbjct: 109 VFAYNTLVAGYCRYGRLDAA---RRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLD 165

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +ML+ G +P   TYT++++  CK+        +L EMR+ G  P + TYN ++NG+C+ G
Sbjct: 166 DMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREG 225

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           ++ +A  +L+ +   G  PD ++Y  +L+G C     +D   L +E
Sbjct: 226 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAE 271



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 6/203 (2%)

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+ EA ++V+   + G  PD    T L+   C+ G    A  + +     G  +D  A+ 
Sbjct: 54  DLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYN 113

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L++G+CR G++  A R++  M    + PD  TYT +I   C  G       LL +M   
Sbjct: 114 TLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQR 170

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P+V TY  L+  +CK      A  +LD M   G  P+ +TYN+++ G C+ G  +D 
Sbjct: 171 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 230

Query: 435 DKL---QSEKGLVSDYACYTSLV 454
            ++    S  G   D   YT+++
Sbjct: 231 KEILNRLSSYGFQPDIVSYTTVL 253


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 177/340 (52%), Gaps = 9/340 (2%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           L++ + G  P+   FN+L+   C+ G +K+A  V +   +  +   A ++N +I+G CK 
Sbjct: 256 LDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQ 315

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             + E  RL+  ME   + PDV TY+ LING  +    ++   L+ EM  RG+ PN V +
Sbjct: 316 GRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTY 375

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             ++    K G++D      E  K V +M  +G  PD +TY  L+   CK G ++ A  +
Sbjct: 376 NVMVKWFVKKGKMD------EVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRL 429

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             EM ++G+++D+V    ++   CR  K+ EA  +L    + G   D+ +Y  +I  + K
Sbjct: 430 MDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFK 489

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           +       RL  EM+    +P++ TYN+++ GLC+ G+   A   LD +L+ G+VPD+IT
Sbjct: 490 HEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEIT 549

Query: 418 YNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           YN ++ G+C+ G  E    F     EK    D     +L+
Sbjct: 550 YNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLL 589



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 174/331 (52%), Gaps = 9/331 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + +NV++   CK+G+I +A  + +E     L    V++NTLING  +  + +EGF+L
Sbjct: 300 PDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKL 359

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              MEG GM+P+  TY+ ++    K+ ++D+ +  + +M E G  P+ V + TLI  HCK
Sbjct: 360 IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCK 419

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      EA +++DEM   GL  D +T   +L   C+E  L+ A D+     +RG 
Sbjct: 420 VGKMD------EAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGY 473

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            +D V++  LI G+ +  K  +A R+  EM +  + P   TY  +I   C+ G T     
Sbjct: 474 FVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAID 533

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L E+   G +P   TYN +++G C+ GQ++ A    + M++    PD +T N LL G C
Sbjct: 534 KLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLC 593

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           K G  E   KL      KG   D   Y +++
Sbjct: 594 KEGMLEKALKLFNTWISKGKDVDAVSYNTII 624



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 166/304 (54%), Gaps = 11/304 (3%)

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRPD 198
           G+   A  +F+   + G+  T ++ NTL+N   +  +     RL   +       G++ +
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPS-SHSIRLSKAVFTDFIKIGVKIN 196

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             +++ LI+G C ENR  +A  +L +M + G  P+++ + T++DG CK GR++      E
Sbjct: 197 TNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLN------E 250

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           AR ++ +M   GL P++ T+ IL+ G C+ G L+ A ++ + M +  +  D   +  +IS
Sbjct: 251 ARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMIS 310

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
           GFC+ G++ EA R+  EM  + L PD  TY  +I+   ++G ++ GF+L++EM   G  P
Sbjct: 311 GFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKP 370

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              TYN ++    K G++   +  +  M + G +PD +TYN L+  HCK G  ++  +L 
Sbjct: 371 NSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLM 430

Query: 439 SEKG 442
            E G
Sbjct: 431 DEMG 434



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 199/409 (48%), Gaps = 18/409 (4%)

Query: 56  HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT---- 111
           H+   +LD  +  YV  G    A Q F  +++   +     C  L++ ++R   P+    
Sbjct: 121 HISKPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVR--FPSSHSI 178

Query: 112 -VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++   + + +  G   +   FN+L+H  C E +  +A  V  +    G     +++NT+
Sbjct: 179 RLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTI 238

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ++G CK   L+E   L   M+  G+ P+  T++ L+ G C+   L +A  ++  M +  +
Sbjct: 239 LDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSV 298

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+   +  +I G CK GRI       EA ++ +EM    L+PD +TY  L++G  + G 
Sbjct: 299 VPDAWTYNVMISGFCKQGRI------AEAMRLREEMENLKLSPDVVTYNTLINGCFEHGS 352

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
            E    + +EM  RG++ ++V +  ++  F + GK+ E ++ +R+M + G  PD  TY  
Sbjct: 353 SEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNT 412

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I   CK G     FRL+ EM   G      T N ++  LC+  +L  A+ LL +    G
Sbjct: 413 LISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRG 472

Query: 411 VVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
              D+++Y  L+ G+ KH         +D+++ EK ++     Y S+++
Sbjct: 473 YFVDEVSYGTLIIGYFKHEKASQALRLWDEMK-EKEIIPSIITYNSMIA 520



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 166/333 (49%), Gaps = 11/333 (3%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  E+   G  P+   +NV++    K+GK+ +      +  + G     V++NTLI+
Sbjct: 356 GFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLIS 415

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
            HCK   +DE FRL   M   G++ D  T + ++  LC+E +LD+A  LL     RG   
Sbjct: 416 WHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFV 475

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           ++V + TLI G+ K+ +        +A ++ DEM    + P  ITY  ++ G C+ G   
Sbjct: 476 DEVSYGTLIIGYFKHEKAS------QALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTN 529

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+D   E+++ G+  D + +  +I G+C+ G+V +A +   +M++   KPD  T   ++
Sbjct: 530 QAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLL 589

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              CK G  +   +L     S G      +YN ++  LCK  +   A  LL+ M +  + 
Sbjct: 590 CGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLG 649

Query: 413 PDDITYNILLEGHCKHG---NPEDFDKLQSEKG 442
           PD  TYN +L G    G   + E+F    +EKG
Sbjct: 650 PDCYTYNAILGGLTDAGRMKDAEEFISKIAEKG 682



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 16/314 (5%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P +  +N L+   CK GK+ +A  + DE G++GL    V+ NT++   C+ + LD
Sbjct: 400 ESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLD 459

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   L       G   D  +Y  LI G  K  +   A  L  EM E+ + P+ + + ++I
Sbjct: 460 EAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMI 519

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C+ G+ + A D       +DE+  +GL PD+ITY  ++ G+C+EG +E A     +M
Sbjct: 520 AGLCQMGKTNQAIDK------LDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKM 573

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +++  + D V    L+ G C+ G + +A ++    +  G   D  +Y  +I   CK    
Sbjct: 574 VEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRF 633

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL----------DTMLDLGV 411
              F LL+EM      P   TYNA++ GL   G++K+A   +          +  L+LG 
Sbjct: 634 GEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSENQFLELGK 693

Query: 412 VPDDITYNILLEGH 425
             D  T  I  E H
Sbjct: 694 RQDARTSEIPQEPH 707



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 68/121 (56%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+ ++++  + P V   N L+  LCKEG ++ A  +F+ +  +G    AVS+NT+I   C
Sbjct: 569 FHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLC 628

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K K   E F L   ME   + PD YTY+A++ GL    R+ DAE  + ++ E+G + N  
Sbjct: 629 KEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSENQF 688

Query: 236 I 236
           +
Sbjct: 689 L 689


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 7/346 (2%)

Query: 85  LRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           L+ +   IP+   C  LID + +       +  + ++      P     + L+       
Sbjct: 49  LQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQ 108

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K   A  V     KRG H    +FN L+ G C++ +  +   L  +M+ + + PD  +Y+
Sbjct: 109 KPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYN 168

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +INGLCK  RL +A+ L  EM      PN V F+ LIDG CKNG      D++E   ++
Sbjct: 169 TVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNG------DVEEGFGLL 222

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           +EM   GL  D   Y+ L+ GFC +GD+E   ++  EM+++ +  + V ++ L++  C+ 
Sbjct: 223 EEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKK 282

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            K  EA +ML  M    ++PD   YT++ D   KNG      ++L  M   G  P   TY
Sbjct: 283 QKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTY 342

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           NA++NGLCK G++ +A  +L+TM   G  PD +TY+ L++G C  G
Sbjct: 343 NAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVG 388



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 182/360 (50%), Gaps = 11/360 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+  + T  P+   G    I+  G+  +VY FN+L+   C+ G    A  +F    +  
Sbjct: 100 LIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNC 159

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    VS+NT+ING CK K L E   L   M+G   +P+  T+SALI+G CK   +++  
Sbjct: 160 LIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGF 219

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM + GL  +  +++ LI G C  G      D++  +++ +EM    + P+ +TY+
Sbjct: 220 GLLEEMEKMGLEGDVFVYSALISGFCSKG------DIERGKELFNEMLRKNVTPNVVTYS 273

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++  CK+   + A  +   M    +  D VA+T L  G  + G+  +A ++L  M+K 
Sbjct: 274 CLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKR 333

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G +P++ TY  +I+  CK G       +L+ M   G  P V TY+ L+ GLC  G++  A
Sbjct: 334 GEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEA 393

Query: 400 NMLLDTML--DLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
             LL+ ++  +  + PD   +N++++  CK        ++     E+G  S+   Y  L+
Sbjct: 394 VDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILI 453



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 183/373 (49%), Gaps = 34/373 (9%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+L    +P+V  ++ LM+ LCK+ K K+A  + D      +    V++  L +G  
Sbjct: 256 LFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLS 315

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K     +  ++  +M   G  P+  TY+A+INGLCKE R+DDA  +L  M ++G  P+ V
Sbjct: 316 KNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVV 375

Query: 236 IFTTLIDGHCKNGRIDMAGDM-------------------------------KEARKIVD 264
            ++TL+ G C  G+ID A D+                               + A+++  
Sbjct: 376 TYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYY 435

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
            M   G   + +TY IL+DG+   G L  AL++ K+ +  GI  +   +T LI+G C+  
Sbjct: 436 TMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQ 495

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            +  A+ +  +    G +P  + Y  ++   C+    +    L +EMR+  H P V ++N
Sbjct: 496 MLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFN 555

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK--- 441
            +++G  K G +++A  LL  ML++ +VPD+IT++IL+    K G  ++   L       
Sbjct: 556 IIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSC 615

Query: 442 GLVSDYACYTSLV 454
           G V D   + SL+
Sbjct: 616 GHVPDAVLFDSLL 628



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 164/343 (47%), Gaps = 10/343 (2%)

Query: 116 FYLEILDYGYS-PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           F+  + DY  S PS    N L+  L K         V  +     +     S + LI   
Sbjct: 45  FHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESF 104

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
              +     F +  ++   G   +VY ++ L+ G C+      A  L   M    L P+ 
Sbjct: 105 VNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDC 164

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + T+I+G CK  R      + EA+++  EM      P+ +T++ L+DGFCK GD+E  
Sbjct: 165 VSYNTVINGLCKGKR------LVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEG 218

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             + +EM K G+E D   ++ALISGFC  G +   + +  EML+  + P+  TY+ +++ 
Sbjct: 219 FGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNA 278

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            CK    K   ++L  M      P V  Y  L +GL K+G+  +A  +LD M+  G  P+
Sbjct: 279 LCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPN 338

Query: 415 DITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           ++TYN ++ G CK G  +D     +  ++KG   D   Y++LV
Sbjct: 339 NVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 168/351 (47%), Gaps = 43/351 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +N +++ LCKEG++ DA  + +   K+G     V+++TL+ G C    +DE 
Sbjct: 334 GEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEA 393

Query: 184 FRLKSVMEGSG--MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
             L +++      ++PDV+ ++ +I  LCK+ RL  A+ + + M ERG   N V +  LI
Sbjct: 394 VDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILI 453

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK-------------- 287
           DG+        AG + +A ++  +   +G++P+  TYT+L++G CK              
Sbjct: 454 DGYLS------AGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKK 507

Query: 288 ---------------------EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
                                E  +E A ++ +EM     + D V+F  +I G  + G V
Sbjct: 508 RASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDV 567

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A+ +L EML + L PD+ T++++I+ F K G       L + M S GH+P    +++L
Sbjct: 568 ESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSL 627

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           + G    G+ +    +L  M D  VV D    + +L   C      D +K+
Sbjct: 628 LKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKI 678



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 163/340 (47%), Gaps = 8/340 (2%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP 93
           +SK G  S A     ++  RG     +  +A++      G +DDA+     + K   +  
Sbjct: 314 LSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPD 373

Query: 94  ARGCRCLIDRMMRTNL--PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
                 L+  +         V L   L   ++   P V+ FN+++ +LCK+ +++ A+ V
Sbjct: 374 VVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRV 433

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           +    +RG  +  V++N LI+G+  A  L +   L      SG+ P+  TY+ LINGLCK
Sbjct: 434 YYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCK 493

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
              L  A+ L ++    G  P    + TL+   C+   ++      +AR +  EM     
Sbjct: 494 MQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVE------QARNLFQEMRNANH 547

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
           +PD +++ I++DG  K GD+ESA ++  EM+   +  DN+ F+ LI+ F + G++ EA  
Sbjct: 548 DPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAAS 607

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           +   M+  G  PD   +  ++  +   G T+    +L++M
Sbjct: 608 LYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQM 647



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 31/293 (10%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPAR--GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           +G +D+A+    LL    F I         +I  + +          Y  +++ G+  ++
Sbjct: 387 VGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNI 446

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             +N+L+      GK+  A  ++ +    G+   A ++  LING CK + L     L + 
Sbjct: 447 VTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNK 506

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
              SG RP V  Y+ L+  LC+E+ ++ A  L  EM      P+ V F  +IDG  K G 
Sbjct: 507 KRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGD 566

Query: 250 IDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYTI 280
           ++ A                             G + EA  + + M + G  PD + +  
Sbjct: 567 VESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDS 626

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           LL G+  +G  E  + + ++M  + + LD+   + +++  C   K V+ E++L
Sbjct: 627 LLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKIL 679


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 9/346 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+   G++P+V  +  LM     +     A  +  E  + G+     ++NTLING C
Sbjct: 443 LYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLC 502

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               + E   +    E  G  P   TY+++ING  K   +  A  +  +MC +G+ PN V
Sbjct: 503 VVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIV 562

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T+ IDG+CK    D+A       K+++++   GL PD   Y  L+ GFC+EG++  AL
Sbjct: 563 TYTSFIDGYCKTSCCDLA------LKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHAL 616

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   M+K G+  +   + + I+G+     + EA R   +M+K G+  D ATYT +ID F
Sbjct: 617 QVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGF 676

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K+G+     +L  EM + G++P   T+ AL +GLC++G + +A  LLD M  L + P+ 
Sbjct: 677 SKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNV 736

Query: 416 ITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSS 458
           + YN+L+ G+ ++G  ++  +L     E+ ++ D   Y  LV   S
Sbjct: 737 LMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKS 782



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 165/346 (47%), Gaps = 10/346 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E L  G  P+   + VL+    +EG  + A  +  +    GL  +   FN +I 
Sbjct: 301 ALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIK 360

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G    K   +   L   M  SG+ PD +TY+ LI+ LC+  ++ +A  L  +M E G+ P
Sbjct: 361 GLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKP 419

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
             V + +L+  +C NG +D      EA K+  EM   G  P+ +TYT L+ G   +   +
Sbjct: 420 YIVTYHSLLLCYCVNGCMD------EAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFD 473

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM + G+  ++  +  LI+G C  G+V E   ML+     G  P   TY  +I
Sbjct: 474 KAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSII 533

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + F K G   + F + ++M + G  P + TY + ++G CK      A  +L+ +   G+ 
Sbjct: 534 NGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLR 593

Query: 413 PDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLVS 455
           PD   YN L+ G C+ GN     +   L  + GL+ + + Y S ++
Sbjct: 594 PDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 146/304 (48%), Gaps = 10/304 (3%)

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   +G    A  F+ ++    K    D+  RL   M  S + PD    S  I  LCK  
Sbjct: 167 EMRGKGHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
             + A L+L +M + G  P D  F +++D   K GR      M+EA  I DE+   G   
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGR------MEEALHIKDELLATGKKM 280

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
             +  T L+ G+C + ++  ALDI +E ++ G+   +V +T LI G    G   +A  + 
Sbjct: 281 SVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELC 340

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R+M   GL P    + MVI     +   K    L KEM +D  +P   TYN L++ LC+ 
Sbjct: 341 RQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIPDAFTYNILIHWLCQR 399

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
            +++ A  L + M + GV P  +TY+ LL  +C +G  ++  KL +E   KG   +   Y
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 451 TSLV 454
           T+L+
Sbjct: 460 TTLM 463



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 124/268 (46%), Gaps = 6/268 (2%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
            ET G     +  ++++  ++  G +  A   ++ +               ID   +T+ 
Sbjct: 517 FETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSC 576

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             + L    ++   G  P +  +N L++  C+EG +  A  V     K GL      +N+
Sbjct: 577 CDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNS 636

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
            I G+   K ++E  R    M   G+  D  TY+ LI+G  K+  +  A  L  EM  +G
Sbjct: 637 FITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKG 696

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             P+ + FT L  G C+NG ID      +ARK++DEM    + P+ + Y +L++G+ + G
Sbjct: 697 NIPDHITFTALTHGLCRNGDID------DARKLLDEMNRLDIRPNVLMYNMLINGYLRNG 750

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALI 317
            L+ A  +  EM++R I  D+  +  L+
Sbjct: 751 KLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
            R  + AY+++++        S A  +L L++ K G+  + S++ S +            
Sbjct: 592 LRPDIAAYNSLIYGFCQEGNMSHALQVLVLML-KDGLLPNISVYNSFITG---------- 640

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
                 Y +L  +++A++ +  + K    +       LID   +    T  L  Y E++ 
Sbjct: 641 ------YKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVA 694

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G  P    F  L H LC+ G I DA+ + DE  +  +    + +N LING+ +   L E
Sbjct: 695 KGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQE 754

Query: 183 GFRLKSVMEGSGMRPDVYTYSALI 206
            FRL   M    + PD  TY  L+
Sbjct: 755 AFRLHDEMLERKIMPDDTTYDILV 778


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 209/451 (46%), Gaps = 76/451 (16%)

Query: 27  RDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86
           + ++H +  + G+  +A+L   +L              LM    D+   DD ++    L 
Sbjct: 214 QTVIHALCDQGGVTEAATLLNEML--------------LMGCAADVNTFDDVVRGMCGLG 259

Query: 87  KHYFRIPARGCRCLIDRMMRTN-LPTV-TLGFYLEIL-----------DYGYSP--SVYV 131
           +   R  AR    L+DRMM    +P V T GF L+ L             G  P  +V +
Sbjct: 260 R--VREAAR----LVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVL 313

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN ++     EGK+ +A  +++  G +G    A +++ L++G CK   +    RL   ME
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 373

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P+V TY+ +++  CK    DD   LL EM  +GLT N   +  +I   CK+GR+D
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 252 MAGDMKEARKIVDEMCTNGLNPD-----------------------------------KI 276
                 EA  ++ EM + G NPD                                    I
Sbjct: 434 ------EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 487

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  ++    ++G  + A+ + KEMI  G  LD V++  LI   C+ G V  +  +L EM
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G+KP++ +Y ++I   CK    +    L K+M + G  P + TYN L+NGLCK G +
Sbjct: 548 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 607

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             A  LL+ + +  V PD ITYNIL+  HCK
Sbjct: 608 HAALNLLEKLHNENVHPDIITYNILISWHCK 638



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 167/340 (49%), Gaps = 13/340 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P   ++  ++H LC +G + +A  + +E    G  A   +F+ ++ G C    + E
Sbjct: 204 HGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVRE 263

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M   G  P V TY  L+ GLC+  + D+A  +L  + E     N V+F T+I 
Sbjct: 264 AARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL----NVVLFNTVIG 319

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G    G+      + EA ++ + M   G  PD  TY+IL+ G CK G + SA+ + +EM 
Sbjct: 320 GCLAEGK------LAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 373

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           K+G   + V +T ++  FC+ G   +   +L EM   GL  +   Y  +I   CK+G   
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L++EMRS G  P + +YN ++  LC + Q++ A  + + +L+ GVV + ITYN ++
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
               + G  +D  +L  E    G   D   Y  L+    K
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCK 533



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 157/286 (54%), Gaps = 6/286 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G++P+V  + +++H  CK G   D + + +E   +GL   +  +N +I   CK  
Sbjct: 371 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE   L   M   G  PD+ +Y+ +I  LC   ++++AE +   + E G+  N + + 
Sbjct: 431 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 490

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I    ++GR       ++A ++  EM  +G + D ++Y  L+   CK+G+++ +L + 
Sbjct: 491 TIIHALLRDGR------WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLL 544

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM ++GI+ +NV++  LIS  C+  +V +A  + ++ML  GL PD  TY  +I+  CK 
Sbjct: 545 EEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKM 604

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           G       LL+++ ++   P + TYN L++  CK   L +A MLL+
Sbjct: 605 GWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 147/315 (46%), Gaps = 23/315 (7%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H YS ++H L        A  LL  +  KKG   +   +  +L +               
Sbjct: 347 HTYSILMHGLCKLGRIGSAVRLLREM-EKKGFAPNVVTYTIVLHS--------------- 390

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            +   G  DD       +      + ++G   +I  + +       +G   E+   G +P
Sbjct: 391 -FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            +  +N +++ LC   ++++A+ +F+   + G+ A  +++NT+I+   +     +  RL 
Sbjct: 450 DICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLA 509

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G   DV +Y+ LI  +CK+  +D + +LL EM E+G+ PN+V +  LI   CK 
Sbjct: 510 KEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE 569

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            R+      ++A ++  +M   GL PD +TY  L++G CK G + +AL++ +++    + 
Sbjct: 570 RRV------RDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVH 623

Query: 308 LDNVAFTALISGFCR 322
            D + +  LIS  C+
Sbjct: 624 PDIITYNILISWHCK 638



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 86/213 (40%), Gaps = 34/213 (15%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P   T+ +     C+ G  + AL + + M + G   D V +  +I   C  G V EA  +
Sbjct: 173 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 232

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EML +G   D  T+  V+   C  G  +   RL+  M + G +P V TY  L+ GLC+
Sbjct: 233 LNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCR 292

Query: 393 -------------------------------HGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                                           G+L  A  L +TM   G  PD  TY+IL
Sbjct: 293 VRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           + G CK G      +L  E   KG   +   YT
Sbjct: 353 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYT 385



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 1/195 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           +++ + + + M  +  +F ++LE  G    G+  + ++   +  G   DA++  + +  H
Sbjct: 457 IIYHLCNNEQMEEAEHMFENLLE-EGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
              +       LI  M +      +L    E+ + G  P+   +N+L+ +LCKE +++DA
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 575

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +  +   +GL    V++NTLING CK   +     L   +    + PD+ TY+ LI+ 
Sbjct: 576 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 635

Query: 209 LCKENRLDDAELLLH 223
            CK   LDDA +LL+
Sbjct: 636 HCKVRLLDDAAMLLN 650


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 172/333 (51%), Gaps = 8/333 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G + +    N L++ LC+ G +++   V  E  +RGL    +S+NTLI G CK+  ++E 
Sbjct: 482 GLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEA 541

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+LK  M   G +PD YTY+ L+ GL  + ++DD   +LHE  + G+ PN   +  +++G
Sbjct: 542 FKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEG 601

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +C   RID       A  + +++  N +    + Y IL+    K G+   A  +R  M  
Sbjct: 602 YCNADRID------NAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRS 655

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             I      ++++I G C    V EA+ +  EM   GL P+   YT +I  +CK G    
Sbjct: 656 SNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQ 715

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +L+EM S+   P   TY  +++G CK G  K A  LL+ M+  G+ PD +TY +L +
Sbjct: 716 IESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVLQK 775

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSK 456
           G+CK    E  + LQ +  +  +   YT+LV K
Sbjct: 776 GYCKENELE--ETLQGDTAVPLEEITYTTLVDK 806



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/542 (26%), Positives = 238/542 (43%), Gaps = 94/542 (17%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG----------MGSSASLFASILET 52
           FR T+ +Y  ++  L+A     +A+  L  ++              +   AS F  + E 
Sbjct: 107 FRFTVRSYCILIRLLLASNHIPRAKFTLKRLIEGNANTPLKKTDARLSEIASAFLELGER 166

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
               L  L++  L   +  LGF   A   F L          + C  L+  ++++N    
Sbjct: 167 SHGEL-DLLIYILCSQFQHLGF-HWAFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHK 224

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           +   +  +   G    VY +   ++  CK GKI +A  +F + G+ G+    V++N LI+
Sbjct: 225 SFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLID 284

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK+  L+E    K  M  + + P + TY  L+NGL K  + D+A  +L EM  +G +P
Sbjct: 285 GLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSP 344

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N+ +F  LIDG+ + G +D      +A ++ D+M   GL P+ +T+  LL GFC+   +E
Sbjct: 345 NEFVFNALIDGYSRKGNMD------DALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQME 398

Query: 293 -----------------------------------SALDIRKEMIKRGIELDNVAFTALI 317
                                              SAL I K ++ R I++++   T L+
Sbjct: 399 QAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLV 458

Query: 318 SGFCRGGKVVEA----------------------------ER--------MLREMLKVGL 341
            G C+ GK +EA                            ER        + +EM++ GL
Sbjct: 459 CGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGL 518

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
             D  +Y  +I   CK+G  +  F+L ++M   G  P   TYN LM GL   G++ +   
Sbjct: 519 VLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGR 578

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKS 457
           +L    D GVVP+  TY ++LEG+C     ++    F+KL   K  +S Y  Y  L++  
Sbjct: 579 VLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELS-YVVYNILIAAH 637

Query: 458 SK 459
           SK
Sbjct: 638 SK 639



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 169/327 (51%), Gaps = 10/327 (3%)

Query: 131 VFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +  +L+  LCK GK  +A  + F    K+GL A   + N L+ G C+  N++E F +   
Sbjct: 453 LLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKE 512

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G+  D  +Y+ LI G CK  ++++A  L  +M ++G  P+   +  L+ G    G+
Sbjct: 513 MVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGK 572

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D  G      +++ E   +G+ P+  TY ++L+G+C    +++A+ +  +++   +EL 
Sbjct: 573 MDDVG------RVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELS 626

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  LI+   + G   EA ++   M    + P   TY+ +I   C N   +    + +
Sbjct: 627 YVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFE 686

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EMR++G +P V  Y AL+ G CK GQ+     +L  M    + P+ ITY I+++G+CK G
Sbjct: 687 EMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMG 746

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSL 453
           N ++  KL +E    G+  D   YT L
Sbjct: 747 NTKEATKLLNEMIANGISPDTVTYTVL 773


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 9/317 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY+   L+  LC+ G+  DA  V     + G      ++NTL+ G+C+   LD  
Sbjct: 104 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 163

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL + M    + PD YTY+ +I GLC   R+ +A  LL +M  RG  P+ V +T L++ 
Sbjct: 164 RRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA 220

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      +    +A +++DEM   G  P+ +TY ++++G C+EG ++ A +    +  
Sbjct: 221 VCK------STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSS 274

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V++T ++ G C   +  + E +  EM++    P++ T+ M++  FC+ G  + 
Sbjct: 275 YGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 334

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L++M   G        N ++N +CK G++ +A   L+ M   G  PD I+Y  +L+
Sbjct: 335 AIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 394

Query: 424 GHCKHGNPEDFDKLQSE 440
           G C+    ED  +L  E
Sbjct: 395 GLCRAERWEDAKELLKE 411



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 187/407 (45%), Gaps = 29/407 (7%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA---IQCFRLLRKHYFRI 92
           ++G  S A+      E  GT +     + L+  Y   G LD A   I    +    Y   
Sbjct: 121 RRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYT 180

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDA 148
           P    R L DR          +G  L +LD     G  PSV  + VL+  +CK      A
Sbjct: 181 PI--IRGLCDRG--------RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQA 230

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             V DE   +G     V++N +ING C+   +D+     + +   G +PD  +Y+ ++ G
Sbjct: 231 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKG 290

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   R +D E L  EM E+   PN+V F  L+   C+ G ++       A +++++M  
Sbjct: 291 LCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE------RAIQVLEQMSG 344

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +G   +     I+++  CK+G ++ A      M   G   D +++T ++ G CR  +  +
Sbjct: 345 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 404

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ +L+EM++    P++ T+   I   C+ G  +    L+++M   G    + TYNAL+N
Sbjct: 405 AKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVN 464

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
           G C  G++ +A   L+    +   P+ ITY  LL G C   N E  D
Sbjct: 465 GFCVQGRVDSA---LELFYSMPCKPNTITYTTLLTGLC---NAERLD 505



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 165/336 (49%), Gaps = 6/336 (1%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I     +P  Y +  ++  LC  G++ +A  + D+   RG   + V++  L+   CK+  
Sbjct: 167 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 226

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             +   +   M   G  P++ TY+ +ING+C+E R+DDA   L+ +   G  P+ V +TT
Sbjct: 227 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 286

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++ G C   R +   D++E   +  EM      P+++T+ +L+  FC+ G +E A+ + +
Sbjct: 287 VLKGLCAAKRWE---DVEE---LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLE 340

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M   G   +      +I+  C+ G+V +A + L  M   G  PD  +YT V+   C+  
Sbjct: 341 QMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 400

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +    LLKEM      P   T+N  +  LC+ G ++ A ML++ M + G   + +TYN
Sbjct: 401 RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYN 460

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            L+ G C  G  +   +L        +   YT+L++
Sbjct: 461 ALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLT 496



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 176/368 (47%), Gaps = 29/368 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+++    P+   F++L+   C+ G ++ A  V ++    G  A     N +IN  C
Sbjct: 303 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTIC 362

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D+ F+  + M   G  PD  +Y+ ++ GLC+  R +DA+ LL EM  +   PN+V
Sbjct: 363 KQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEV 422

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEA-------------RKIVDEMCTNG------------ 270
            F T I   C+ G I+ A  + E                +V+  C  G            
Sbjct: 423 TFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 482

Query: 271 -LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P+ ITYT LL G C    L++A ++  EM+++    + V F  L+S FC+ G + EA
Sbjct: 483 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 542

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++ +M++ G  P+  TY  ++D   K+ +++    LL  + S+G  P + TY++++  
Sbjct: 543 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 602

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSD 446
           L +  +++ A  +   + DLG+ P  + YN +L   CK  N +   DF       G + +
Sbjct: 603 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 662

Query: 447 YACYTSLV 454
              Y +L+
Sbjct: 663 ELTYITLI 670



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 151/312 (48%), Gaps = 13/312 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P+   FN  +  LC++G I+ A M+ ++  + G     V++N L+NG C   
Sbjct: 411 EMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG 470

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D    L   M     +P+  TY+ L+ GLC   RLD A  LL EM ++   PN V F 
Sbjct: 471 RVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFN 527

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+   C+ G +D      EA ++V++M  +G  P+ ITY  LLDG  K+ + E AL++ 
Sbjct: 528 VLVSFFCQKGLMD------EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 581

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             ++  G+  D V ++++I    R  +V EA +M   +  +G++P    Y  ++   CK 
Sbjct: 582 HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKR 641

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            +T         M S+G +P   TY  L+ GL     LK    LL  +   GV    +  
Sbjct: 642 CNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV----LNK 697

Query: 419 NILLEGHCKHGN 430
           N+L E   K  N
Sbjct: 698 NLLEEWRPKFSN 709



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A     A ++VD   + G  PD    T L+   C+ G    A  + +   + G  +D  A
Sbjct: 87  ATTSPRAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFA 146

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  L++G+CR G++  A R++  M    + PD  TYT +I   C  G       LL +M 
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 203

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P+V TY  L+  +CK      A  +LD M   G  P+ +TYN+++ G C+ G  +
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 263

Query: 433 D---FDKLQSEKGLVSDYACYTSLV 454
           D   F    S  G   D   YT+++
Sbjct: 264 DAREFLNRLSSYGFQPDTVSYTTVL 288



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRK 87
           LL  + + + + ++A L A +L+      P +V  + L+  +   G +D+AI+    + +
Sbjct: 494 LLTGLCNAERLDAAAELLAEMLQKDCA--PNVVTFNVLVSFFCQKGLMDEAIELVEQMME 551

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           H           L+D + +       L     ++  G SP +  ++ ++  L +E ++++
Sbjct: 552 HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 611

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  +F      G+   AV +N ++   CK  N D      + M  +G  P+  TY  LI 
Sbjct: 612 AIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 671

Query: 208 GLCKENRLDDAELLLHEMCERGL 230
           GL  E+ L +   LL E+C RG+
Sbjct: 672 GLANEDFLKETRDLLRELCSRGV 694


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 165/337 (48%), Gaps = 29/337 (8%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I + G SP+V ++N LM    K   +  A M+++E   +G+     +FN L+ G+ K   
Sbjct: 374 IQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGK 433

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             + + L      S + PD   Y   + GLC   +LD+A   L +M E+G+ P+ V F +
Sbjct: 434 EADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNS 493

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           +I  + + G  D A                             G ++EAR ++ +M   G
Sbjct: 494 VIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKG 553

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           L  +K+ +T+LLDG+ K GD   A  +  EM  RGI  D +AF+A I G  + G V EA 
Sbjct: 554 LPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAY 613

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
               EM K G  P++  Y  +I   C  G      +L +EMR  G LP + T N ++NG 
Sbjct: 614 EAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGF 673

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           CK G++K+A      M  +GV PD +TYN L+ G+CK
Sbjct: 674 CKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCK 710



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 165/316 (52%), Gaps = 7/316 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y  +L +G  PS    + ++  L K+G++++A+ +  +   +GL    V+F  L++G+ K
Sbjct: 511 YKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFK 570

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +      L   ME  G+ PD   +SA I+GL K   +++A     EM ++G  PN+ +
Sbjct: 571 VGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFV 630

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + +LI G C  G+      + EA K+  EM   GL PD  T  I+++GFCKEG ++SA D
Sbjct: 631 YNSLIHGLCNCGK------LHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFD 684

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
              EM   G+  D V +  LI G+C+   +V A+  L +M   G  PD  TY + I  FC
Sbjct: 685 AFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFC 744

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            +        +L E+ + G +P   TYN +MN +C    L  A +L   +L +  VP+ +
Sbjct: 745 SSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTD-MLDRAMVLTAKLLKMAFVPNVV 803

Query: 417 TYNILLEGHCKHGNPE 432
           T N+LL   CK G PE
Sbjct: 804 TTNVLLSHFCKQGMPE 819



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 161/300 (53%), Gaps = 6/300 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P   +++V +  LC  G++ +A    ++  ++G+  + V+FN++I  + +A   D   + 
Sbjct: 451 PDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKA 510

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M   G+ P   T S+++ GL K+ RL +A  LL++M ++GL  N V FT L+DG+ K
Sbjct: 511 YKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFK 570

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GD   A  +  EM   G+ PD I ++  +DG  K G +E A +   EM K+G 
Sbjct: 571 ------VGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGF 624

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +N  + +LI G C  GK+ EA ++ REM + GL PD  T  ++I+ FCK G  K+ F 
Sbjct: 625 VPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFD 684

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
              EM   G  P   TYN L+ G CK   + +A+  L+ M   G  PD  TYNI ++G C
Sbjct: 685 AFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFC 744



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 129/558 (23%), Positives = 222/558 (39%), Gaps = 115/558 (20%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDA 64
           T+H+     H L A  +   A+D++  ++ + G   SA L   +      +     +L+ 
Sbjct: 154 TVHSCCIAAHILAAESLQLLAQDVISWVIRRIGASRSAHLVEFMWANHHKYESDFSILNT 213

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT----------------- 107
           LM  +++     ++++    +R+   R  +     L   ++R                  
Sbjct: 214 LMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDG 273

Query: 108 ------NLPTVTLGF----YLEILD--------YGYSPSVYVFNVLMH------------ 137
                 N   + L F    YL + +        +   P VY +N+L++            
Sbjct: 274 PRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDAL 333

Query: 138 -----------------------KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
                                    C EG + +A+ +F+   + GL      +NTL++G+
Sbjct: 334 GFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGY 393

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL----------------------------- 205
            KA+++ +   L   M   G+ PD  T++ L                             
Sbjct: 394 FKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDC 453

Query: 206 ------INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
                 + GLC   +LD+A   L +M E+G+ P+ V F ++I  + + G  D       A
Sbjct: 454 SLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFED------NA 507

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            K    M   GL P   T + +L G  K+G L+ A D+  +MI +G+ ++ VAFT L+ G
Sbjct: 508 HKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDG 567

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
           + + G    A  +  EM   G+ PD   ++  ID   K G  +  +    EM   G +P 
Sbjct: 568 YFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPN 627

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ 438
              YN+L++GLC  G+L  A  L   M   G++PD  T NI++ G CK G  +  FD   
Sbjct: 628 NFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFA 687

Query: 439 S--EKGLVSDYACYTSLV 454
                G+  D   Y +L+
Sbjct: 688 EMHHIGVTPDTVTYNTLI 705



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 17/290 (5%)

Query: 89  YFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
           ++ + ARG           ID + +  L       + E+   G+ P+ +V+N L+H LC 
Sbjct: 581 WYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCN 640

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
            GK+ +A  +  E  ++GL     + N +ING CK   +   F   + M   G+ PD  T
Sbjct: 641 CGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVT 700

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ LI G CK   +  A+  L++M   G  P+   +   I G C + +I  A  M     
Sbjct: 701 YNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTM----- 755

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            +DE+   G+ P+ +TY  +++  C +  L+ A+ +  +++K     + V    L+S FC
Sbjct: 756 -LDELIAVGVVPNTVTYNTMMNAVCTDM-LDRAMVLTAKLLKMAFVPNVVTTNVLLSHFC 813

Query: 322 RGG---KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + G   K +   + L ++L+         Y + +D     G TK  + L+
Sbjct: 814 KQGMPEKALIWGQKLNKLLRADFIGYWLVYILSMDKQATAGSTKFIYWLM 863



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 147/341 (43%), Gaps = 10/341 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y     + N LM          ++  +     + G+  ++ + + L     +  +    +
Sbjct: 204 YESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVW 263

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +L   M   G RP  + ++ +I   C++  L  AE LL  M +    P+   +  LI+ +
Sbjct: 264 KLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAY 323

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
              GR        +A   +  M  NG  P  IT++ ++  FC EG++  A  I + + + 
Sbjct: 324 RIRGRTS------DALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEV 377

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  +   +  L+SG+ +   V +A  +  EM   G+ PD AT+ +++    K G     
Sbjct: 378 GLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADS 437

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + L ++      +P    Y+  + GLC  GQL  A   L+ ML+ G+ P  + +N ++  
Sbjct: 438 YELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAA 497

Query: 425 HCKHG---NPEDFDKLQSEKGLV-SDYACYTSLVSKSSKYR 461
           + + G   N     K+    GLV S   C + L+  S K R
Sbjct: 498 YSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGR 538


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 194/387 (50%), Gaps = 11/387 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY-GYSPSVYV 131
           G L  A   FR+L         + C   ++ ++R          + E+ +    + + Y 
Sbjct: 164 GSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYS 223

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  ++  LCK GK+     +  E  + GL  T V++N L++  CK+  ++E FRLK  ME
Sbjct: 224 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRME 283

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             GM P V T+  LINGL +  R  +  ++L EM + G++PN+VI+  LI  HC+ G   
Sbjct: 284 QGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCS 343

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A ++ DEM    + P  +TY ++    CKEG++E A  I ++M+  G+ +   
Sbjct: 344 ------QALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCG 397

Query: 312 AFTALISGFCRGGKVVEA-ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            F  +++   +  + +E+   +  EM+  G++P+D   T  +   CK G  +    +  +
Sbjct: 398 LFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFK 457

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             + G    + T NAL++GLC+   +K A  ++ TML+ G+  D ITYNI++ G CK   
Sbjct: 458 TLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSK 517

Query: 431 PEDFDKLQ---SEKGLVSDYACYTSLV 454
            E+  KL    + +G   D   + +L+
Sbjct: 518 MEEAIKLHGDMTRRGFKPDLFTFNTLL 544



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 176/351 (50%), Gaps = 22/351 (6%)

Query: 100 LIDRMMRTNLPTVT---------------LGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
           ++ R MR N P +T               +G + + L+ G   ++   N L+H LC+   
Sbjct: 423 MVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKY 482

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           +K+A  V      +G+   ++++N +I G CK   ++E  +L   M   G +PD++T++ 
Sbjct: 483 MKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNT 542

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           L++  C   ++++   LL +M   GL P+ V + T+IDGHCK      A D+++A++ + 
Sbjct: 543 LLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCK------AKDIRKAKEYLT 596

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           E+   GL P+   Y  L+ G+ + GD+  A+D  + M   GI+  NV + +L+   C  G
Sbjct: 597 ELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAG 656

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            V EA+ +  +  +  +      YT++I  +CK G         +EMRS G  P   TY 
Sbjct: 657 LVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYT 716

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
            LM    K G  + A+ L D M+  GV+PD+ITY  L+   C   N  D D
Sbjct: 717 TLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI-ARCSEVNSLDKD 766



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 9/344 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+  +    M +LCK GK ++A  ++ +   +GL     + N LI+G C+ K
Sbjct: 422 EMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGK 481

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E  ++   M   G+  D  TY+ +I G CK++++++A  L  +M  RG  P+   F 
Sbjct: 482 YMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFN 541

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+  +C  G+      M+E   ++D+M T GL PD ++Y  ++DG CK  D+  A +  
Sbjct: 542 TLLHAYCNLGK------MEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYL 595

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E++ RG++ +   + ALI G+ R G +  A   +  M   G++P + TY  ++   C  
Sbjct: 596 TELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHA 655

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    +  + R +     V  Y  ++ G CK G++  A    + M   G+ P+ +TY
Sbjct: 656 GLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTY 715

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
             L+  + K GN E+  KL  E    G++ D   Y +L+++ S+
Sbjct: 716 TTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSE 759



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/516 (24%), Positives = 206/516 (39%), Gaps = 105/516 (20%)

Query: 29  LLHLIVSKKGMGS---SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85
           L+H  ++    GS   +A  F  +L +RG        +A +   V  G LD A + F  +
Sbjct: 153 LIHTFITSPAQGSLCRAADAF-RVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEM 211

Query: 86  RK-HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
           R+     +       +I  + +            E+   G  P+V  +NVLM  LCK G+
Sbjct: 212 RESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGR 271

Query: 145 IKDA-----------------------------------QMVFDEFGKRGLHATAVSFNT 169
           +++A                                    +V  E  + G+    V +N 
Sbjct: 272 VEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNE 331

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL------- 222
           LI  HC+  +  +  RL   M    M+P   TY+ +   LCKE  ++ AE +L       
Sbjct: 332 LIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIG 391

Query: 223 -----------------------------HEMCERGLTPNDVIFTTLIDGHCKNGR---- 249
                                        +EM  RG+ PND + T  +   CK G+    
Sbjct: 392 MTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEA 451

Query: 250 -------------IDMAGD------------MKEARKIVDEMCTNGLNPDKITYTILLDG 284
                        +++A              MKEA K++  M   G+  D ITY I++ G
Sbjct: 452 VGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRG 511

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK+  +E A+ +  +M +RG + D   F  L+  +C  GK+ E   +L +M   GL+PD
Sbjct: 512 CCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPD 571

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             +Y  +ID  CK  D +     L E+   G  P V  YNAL+ G  ++G +  A   ++
Sbjct: 572 IVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVE 631

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           TM   G+ P ++TY  L+   C  G  E+   + S+
Sbjct: 632 TMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQ 667



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +  E++D G  P+V+++N L+    + G I  A    +     G+  T V++ +L+   C
Sbjct: 594 YLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMC 653

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            A  ++E   + S    + +   V  Y+ +I G CK  ++ +A     EM  RG++PN +
Sbjct: 654 HAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKL 713

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +TTL+  + K      +G+ +EA K+ DEM  +G+ PD ITY  L+    +   L+  +
Sbjct: 714 TYTTLMYAYSK------SGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDI 767

Query: 296 DIRKEMIKRGIELDNVAFTALISGF 320
               E+    +  D+  +  L +G 
Sbjct: 768 GHTAELSSGALTKDDRMYNILSNGI 792



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 67/160 (41%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +++ G     +   +LM      G +++A   F   R++   +   G   +I    +   
Sbjct: 633 MKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGK 692

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
               + ++ E+   G SP+   +  LM+   K G  ++A  +FDE    G+    +++ T
Sbjct: 693 MVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGT 752

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           LI    +  +LD+     + +    +  D   Y+ L NG+
Sbjct: 753 LIARCSEVNSLDKDIGHTAELSSGALTKDDRMYNILSNGI 792


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 209/451 (46%), Gaps = 76/451 (16%)

Query: 27  RDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86
           + ++H +  + G+  +A+L   +L              LM    D+   DD ++    L 
Sbjct: 198 QTVIHALCDQGGVTEAATLLNEML--------------LMGCAADVNTFDDVVRGMCGLG 243

Query: 87  KHYFRIPARGCRCLIDRMMRTN-LPTV-TLGFYLEIL-----------DYGYSP--SVYV 131
           +   R  AR    L+DRMM    +P V T GF L+ L             G  P  +V +
Sbjct: 244 R--VREAAR----LVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVL 297

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN ++     EGK+ +A  +++  G +G    A +++ L++G CK   +    RL   ME
Sbjct: 298 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 357

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P+V TY+ +++  CK    DD   LL EM  +GLT N   +  +I   CK+GR+D
Sbjct: 358 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 417

Query: 252 MAGDMKEARKIVDEMCTNGLNPD-----------------------------------KI 276
                 EA  ++ EM + G NPD                                    I
Sbjct: 418 ------EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 471

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  ++    ++G  + A+ + KEMI  G  LD V++  LI   C+ G V  +  +L EM
Sbjct: 472 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 531

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G+KP++ +Y ++I   CK    +    L K+M + G  P + TYN L+NGLCK G +
Sbjct: 532 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 591

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             A  LL+ + +  V PD ITYNIL+  HCK
Sbjct: 592 HAALNLLEKLHNENVHPDIITYNILISWHCK 622



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 167/340 (49%), Gaps = 13/340 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P   ++  ++H LC +G + +A  + +E    G  A   +F+ ++ G C    + E
Sbjct: 188 HGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVRE 247

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M   G  P V TY  L+ GLC+  + D+A  +L  + E     N V+F T+I 
Sbjct: 248 AARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL----NVVLFNTVIG 303

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G    G+      + EA ++ + M   G  PD  TY+IL+ G CK G + SA+ + +EM 
Sbjct: 304 GCLAEGK------LAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 357

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           K+G   + V +T ++  FC+ G   +   +L EM   GL  +   Y  +I   CK+G   
Sbjct: 358 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 417

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L++EMRS G  P + +YN ++  LC + Q++ A  + + +L+ GVV + ITYN ++
Sbjct: 418 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 477

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
               + G  +D  +L  E    G   D   Y  L+    K
Sbjct: 478 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCK 517



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 157/286 (54%), Gaps = 6/286 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G++P+V  + +++H  CK G   D + + +E   +GL   +  +N +I   CK  
Sbjct: 355 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 414

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE   L   M   G  PD+ +Y+ +I  LC   ++++AE +   + E G+  N + + 
Sbjct: 415 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 474

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I    ++GR       ++A ++  EM  +G + D ++Y  L+   CK+G+++ +L + 
Sbjct: 475 TIIHALLRDGR------WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLL 528

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM ++GI+ +NV++  LIS  C+  +V +A  + ++ML  GL PD  TY  +I+  CK 
Sbjct: 529 EEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKM 588

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           G       LL+++ ++   P + TYN L++  CK   L +A MLL+
Sbjct: 589 GWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 634



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 147/315 (46%), Gaps = 23/315 (7%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H YS ++H L        A  LL  +  KKG   +   +  +L +               
Sbjct: 331 HTYSILMHGLCKLGRIGSAVRLLREM-EKKGFAPNVVTYTIVLHS--------------- 374

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            +   G  DD       +      + ++G   +I  + +       +G   E+   G +P
Sbjct: 375 -FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 433

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            +  +N +++ LC   ++++A+ +F+   + G+ A  +++NT+I+   +     +  RL 
Sbjct: 434 DICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLA 493

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G   DV +Y+ LI  +CK+  +D + +LL EM E+G+ PN+V +  LI   CK 
Sbjct: 494 KEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE 553

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            R+      ++A ++  +M   GL PD +TY  L++G CK G + +AL++ +++    + 
Sbjct: 554 RRV------RDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVH 607

Query: 308 LDNVAFTALISGFCR 322
            D + +  LIS  C+
Sbjct: 608 PDIITYNILISWHCK 622



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 86/213 (40%), Gaps = 34/213 (15%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P   T+ +     C+ G  + AL + + M + G   D V +  +I   C  G V EA  +
Sbjct: 157 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 216

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EML +G   D  T+  V+   C  G  +   RL+  M + G +P V TY  L+ GLC+
Sbjct: 217 LNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCR 276

Query: 393 -------------------------------HGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                                           G+L  A  L +TM   G  PD  TY+IL
Sbjct: 277 VRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 336

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           + G CK G      +L  E   KG   +   YT
Sbjct: 337 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYT 369



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 1/195 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           +++ + + + M  +  +F ++LE  G    G+  + ++   +  G   DA++  + +  H
Sbjct: 441 IIYHLCNNEQMEEAEHMFENLLE-EGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 499

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
              +       LI  M +      +L    E+ + G  P+   +N+L+ +LCKE +++DA
Sbjct: 500 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 559

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +  +   +GL    V++NTLING CK   +     L   +    + PD+ TY+ LI+ 
Sbjct: 560 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 619

Query: 209 LCKENRLDDAELLLH 223
            CK   LDDA +LL+
Sbjct: 620 HCKVRLLDDAAMLLN 634


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 178/331 (53%), Gaps = 9/331 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V ++N ++  LCK   + DA  ++ +   + +    V+F+ LI G C    L+E F L 
Sbjct: 207 NVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLF 266

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M    + PD YT++ L++ LCKE  L  A+ +L  M + G+ PN V +++L+DG+C  
Sbjct: 267 REMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYC-- 324

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
               +   + +A+ +++ +   G  P+  +Y  +++GFCK   ++ AL +  +M  +GI 
Sbjct: 325 ----LVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIA 380

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D V + +LI G C+ G++  A  ++ EM   G   +  TY  +ID  CKN        L
Sbjct: 381 PDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIAL 440

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           +K+++  G  P + T+N L+ GLCK G+LKNA  +   +L  G   +  TYNI++ G CK
Sbjct: 441 VKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCK 500

Query: 428 HGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
            G  ++ + L S   + G++ D   Y +L+ 
Sbjct: 501 EGLFDEAEALLSKMDDNGIIPDAVTYETLIQ 531



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 167/310 (53%), Gaps = 6/310 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P    FN L+  LC  GK+K+A    D     G H    S+ TLING CK  
Sbjct: 128 KILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIG 187

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 ++   ++G  ++ +V  Y+ +I+ LCK   + DA  L  +M  + ++P+ V F+
Sbjct: 188 ETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFS 247

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G C      + G ++EA  +  EM    +NPD  T+ IL+D  CKEG+L+ A ++ 
Sbjct: 248 ALIYGFC------IVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNML 301

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+K G+  + V +++L+ G+C   +V +A+ +L  + ++G  P+  +Y  +I+ FCK 
Sbjct: 302 VVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKI 361

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L  +M+  G  P   TYN+L++GLCK G++  A  L+D M D G   +  TY
Sbjct: 362 KMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTY 421

Query: 419 NILLEGHCKH 428
           N L++  CK+
Sbjct: 422 NCLIDALCKN 431



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 191/387 (49%), Gaps = 6/387 (1%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           G HL       L+     +G    A+Q  R +     +I       +ID + +  L    
Sbjct: 168 GFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDA 227

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
              Y +++    SP V  F+ L++  C  G++++A  +F E   + ++    +FN L++ 
Sbjct: 228 YELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDA 287

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK  NL     +  VM   G+ P+V TYS+L++G C  N+++ A+ +L+ + + G  PN
Sbjct: 288 LCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPN 347

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              + T+I+G CK   +D      EA  + ++M   G+ PDK+TY  L+DG CK G +  
Sbjct: 348 AHSYCTMINGFCKIKMVD------EALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISY 401

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++  EM   G   +   +  LI   C+   V +A  +++++   G++PD  T+ ++I 
Sbjct: 402 AWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIY 461

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G  K    + +++ S G+     TYN ++NGLCK G    A  LL  M D G++P
Sbjct: 462 GLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIP 521

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE 440
           D +TY  L++        E  +KL  E
Sbjct: 522 DAVTYETLIQALFHKDENEKAEKLLRE 548



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 160/300 (53%), Gaps = 6/300 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
             G + E++    +P  Y FN+L+  LCKEG +K A+ +     K G+    V++++L++
Sbjct: 262 AFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMD 321

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C    +++   + + +   G  P+ ++Y  +ING CK   +D+A  L ++M  +G+ P
Sbjct: 322 GYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAP 381

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V + +LIDG CK+GRI  A ++      VDEM  NG   +  TY  L+D  CK   ++
Sbjct: 382 DKVTYNSLIDGLCKSGRISYAWEL------VDEMHDNGQPANIFTYNCLIDALCKNHHVD 435

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ + K++  +GI+ D   F  LI G C+ G++  A+ + +++L  G   +  TY +++
Sbjct: 436 QAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMV 495

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           +  CK G       LL +M  +G +P   TY  L+  L    + + A  LL  M+   VV
Sbjct: 496 NGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVV 555



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 177/378 (46%), Gaps = 56/378 (14%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH-------ATAVSFNTLINGHCKA 177
           Y PS ++F  L+ +L  + +   + +  D       H       ++ + FN ++    K+
Sbjct: 21  YIPS-FLFPFLITRLYSQFQFVPSNIDVDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKS 79

Query: 178 KN--LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            N        L   +E  G+ PD++T++ LIN  C    ++ A  ++ ++ + G  P+ +
Sbjct: 80  NNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTI 139

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F TLI G C NG++      KEA    D +   G + D+ +Y  L++G CK G+  +AL
Sbjct: 140 TFNTLIKGLCLNGKV------KEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTAL 193

Query: 296 -----------------------------------DIRKEMIKRGIELDNVAFTALISGF 320
                                              ++  +MI + I  D V F+ALI GF
Sbjct: 194 QMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGF 253

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C  G++ EA  + REM+   + PD  T+ +++D  CK G+ K    +L  M  +G +P V
Sbjct: 254 CIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNV 313

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDK 436
            TY++LM+G C   Q+  A  +L+T+  +G  P+  +Y  ++ G CK    ++    F+ 
Sbjct: 314 VTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFND 373

Query: 437 LQSEKGLVSDYACYTSLV 454
           +Q  KG+  D   Y SL+
Sbjct: 374 MQF-KGIAPDKVTYNSLI 390



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 72/131 (54%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
            CLID + + +     +    +I D G  P +Y FN+L++ LCK G++K+AQ VF +   
Sbjct: 422 NCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLS 481

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           +G    A ++N ++NG CK    DE   L S M+ +G+ PD  TY  LI  L  ++  + 
Sbjct: 482 KGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEK 541

Query: 218 AELLLHEMCER 228
           AE LL EM  R
Sbjct: 542 AEKLLREMIAR 552


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 189/384 (49%), Gaps = 10/384 (2%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V DAL+ V V  G  D A       +   F      C  L++R++ +    + +  Y ++
Sbjct: 151 VSDALIKVCVASGMFDQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQL 210

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
             +G +P+ Y + + +   C++G + +A  VF +  + G+   + S+ T I G C     
Sbjct: 211 KAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRS 270

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D GF++   +  + +  DV+ Y+ +I G C E +L +AE +L EM ++G  P+  ++  L
Sbjct: 271 DLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCAL 330

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G+C      M G++ +A  + DEM + G+  + +  + +L G  + G      +  KE
Sbjct: 331 ISGYC------MVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKE 384

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
             K GI  D   +  ++   C+ GKV EA  +L EM    + PD   YT VI  +   G 
Sbjct: 385 FKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGK 444

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 + +EM+  GH P + TYN L  G  ++G  + A  LL+ M   GV PD +T+N+
Sbjct: 445 VVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNM 504

Query: 421 LLEGHCKHGNPED----FDKLQSE 440
           ++EG C  G  +D    FD L+ +
Sbjct: 505 IIEGLCIGGKVDDAQAFFDNLEEK 528



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 190/419 (45%), Gaps = 46/419 (10%)

Query: 25  QARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCF 82
           +  + + L+V  KG      +        G  L G V+DAL I     D+G   D +   
Sbjct: 409 KVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVT-- 466

Query: 83  RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
                  + + A G         R  L    L     +   G  P     N+++  LC  
Sbjct: 467 -------YNVLAGG-------FSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIG 512

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
           GK+ DAQ  FD   ++ L     +++ ++NG+C+A ++++ F L   +   G      ++
Sbjct: 513 GKVDDAQAFFDNLEEKCLE----NYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASF 568

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
             L+  LC E   + A  LL  M    + P  ++++ +I      G +  AG+M++A+ +
Sbjct: 569 FKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVI------GALFQAGEMEKAQYV 622

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
            + +   GL PD ITYTI+++G+C+   ++ A  +  +M  RGIE D + +T L++   +
Sbjct: 623 FNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSK 682

Query: 323 ---------------GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
                             +++   +  EM  + +KPD   YT++ID  CK  + +    L
Sbjct: 683 IDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINL 742

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             EM   G  P   TY AL++G C  G +K A +L D ML+ G+ PD  T ++L   HC
Sbjct: 743 FNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMSVL---HC 798



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 27/334 (8%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y E+ D G+ P +  +NVL     + G  ++A  + +    +G+    V+ N +I 
Sbjct: 448 ALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIE 507

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C    +D+       +E   +      YSA++NG C+ N ++ A  LL  + ++G   
Sbjct: 508 GLCIGGKVDDAQAFFDNLEEKCLE----NYSAMVNGYCEANHVNKAFALLIRLSKQGRIL 563

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
               F  L+   C  G      D ++A  +++ M    +NP  I Y+ ++    + G++E
Sbjct: 564 KKASFFKLLGNLCSEG------DSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEME 617

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +   ++ RG+  D + +T +I+G+CR  K+ EA  +L +M   G++PD  TYT+++
Sbjct: 618 KAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLL 677

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHL----------------PAVETYNALMNGLCKHGQL 396
           +  C   D ++    L  M+S  ++                P V  Y  L++  CK   +
Sbjct: 678 NN-CSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNI 736

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           ++A  L + M+D G+ PD +TY  LL G+C  GN
Sbjct: 737 QDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGN 770



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 165/347 (47%), Gaps = 28/347 (8%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  +  ++     +GK+ DA  ++ E    G     V++N L  G  +     E   L
Sbjct: 427 PDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSL 486

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + ME  G++PD  T++ +I GLC   ++DDA+     + E+ L      ++ +++G+C+
Sbjct: 487 LNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLEN----YSAMVNGYCE 542

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 A  + +A  ++  +   G    K ++  LL   C EGD E AL + + M+   I
Sbjct: 543 ------ANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNI 596

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
               + ++ +I    + G++ +A+ +   ++  GL PD  TYT++I+ +C+    K  + 
Sbjct: 597 NPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWH 656

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCK---------------HGQLKNANMLLDTMLDLGV 411
           +L +M++ G  P V TY  L+N   K                  + + + L   M D+ +
Sbjct: 657 VLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDI 716

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            PD I Y +L++ HCK  N +D   L +E   +GL  D   YT+L+S
Sbjct: 717 KPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLS 763



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 129/238 (54%), Gaps = 16/238 (6%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           F  L+  LC EG  + A  + +      ++ T + ++ +I    +A  +++   + +++ 
Sbjct: 568 FFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLV 627

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G+ PDV TY+ +ING C+ N++ +A  +L +M  RG+ P+ + +T L++ +C   +ID
Sbjct: 628 DRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLN-NC--SKID 684

Query: 252 M------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +              +M +   +  EM    + PD I YT+L+D  CK  +++ A+++  
Sbjct: 685 LRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFN 744

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           EMI RG+  D V +TAL+SG+C  G + +A  +  EML  G++PD  T + V+ C  K
Sbjct: 745 EMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMS-VLHCILK 801



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 137/323 (42%), Gaps = 54/323 (16%)

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLC-----------------KENRLDDAELLLHEM 225
            F   + ++ SG   D YTY+A++  LC                 K+  LD   + L E 
Sbjct: 76  AFSYFNQLKESGYSHDPYTYAAIVRILCFWGWSRKLDSILMEIIKKDGNLDFGIVNLFEA 135

Query: 226 CERGLTPNDV-----IFTTLIDGHCKNGRIDMAGD-----------------------MK 257
              G+          +   LI     +G  D A D                       + 
Sbjct: 136 LGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTKHCGFAPQILSCNFLMNRLV 195

Query: 258 EARK------IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           E+RK      I  ++   GLNP+  TYTI + GFC++G+L  A+D+ ++M + G+  ++ 
Sbjct: 196 ESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSF 255

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           ++T  I G C  G+     ++L++++   +  D   YT+VI  FC     K    +L+EM
Sbjct: 256 SYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREM 315

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G  P V  Y AL++G C  G L  A  L D M+  GV  + +  + +L+G  + G  
Sbjct: 316 EKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMA 375

Query: 432 EDFDKLQSE---KGLVSDYACYT 451
            +      E    G+  D ACY 
Sbjct: 376 SEVANQFKEFKKMGIFFDEACYN 398


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 209/451 (46%), Gaps = 76/451 (16%)

Query: 27  RDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86
           + ++H +  + G+  +A+L   +L              LM    D+   DD ++    L 
Sbjct: 214 QTVIHALCDQGGVTEAATLLNEML--------------LMGCAADVNTFDDVVRGMCGLG 259

Query: 87  KHYFRIPARGCRCLIDRMMRTN-LPTV-TLGFYLEIL-----------DYGYSP--SVYV 131
           +   R  AR    L+DRMM    +P V T GF L+ L             G  P  +V +
Sbjct: 260 R--VREAAR----LVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVL 313

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN ++     EGK+ +A  +++  G +G    A +++ L++G CK   +    RL   ME
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREME 373

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P+V TY+ +++  CK    DD   LL EM  +GLT N   +  +I   CK+GR+D
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 252 MAGDMKEARKIVDEMCTNGLNPD-----------------------------------KI 276
                 EA  ++ EM + G NPD                                    I
Sbjct: 434 ------EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 487

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  ++    ++G  + A+ + KEMI  G  LD V++  LI   C+ G V  +  +L EM
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G+KP++ +Y ++I   CK    +    L K+M + G  P + TYN L+NGLCK G +
Sbjct: 548 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 607

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             A  LL+ + +  V PD ITYNIL+  HCK
Sbjct: 608 HAALNLLEKLHNENVHPDIITYNILISWHCK 638



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 167/340 (49%), Gaps = 13/340 (3%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P   ++  ++H LC +G + +A  + +E    G  A   +F+ ++ G C    + E
Sbjct: 204 HGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVRE 263

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M   G  P V TY  L+ GLC+  + D+A  +L  + E     N V+F T+I 
Sbjct: 264 AARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL----NVVLFNTVIG 319

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G    G+      + EA ++ + M   G  PD  TY+IL+ G CK G + SA+ + +EM 
Sbjct: 320 GCLAEGK------LAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREME 373

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           K+G   + V +T ++  FC+ G   +   +L EM   GL  +   Y  +I   CK+G   
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L++EMRS G  P + +YN ++  LC + Q++ A  + + +L+ GVV + ITYN ++
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
               + G  +D  +L  E    G   D   Y  L+    K
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCK 533



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 157/286 (54%), Gaps = 6/286 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G++P+V  + +++H  CK G   D + + +E   +GL   +  +N +I   CK  
Sbjct: 371 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE   L   M   G  PD+ +Y+ +I  LC   ++++AE +   + E G+  N + + 
Sbjct: 431 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 490

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I    ++GR       ++A ++  EM  +G + D ++Y  L+   CK+G+++ +L + 
Sbjct: 491 TIIHALLRDGR------WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLL 544

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM ++GI+ +NV++  LIS  C+  +V +A  + ++ML  GL PD  TY  +I+  CK 
Sbjct: 545 EEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKM 604

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           G       LL+++ ++   P + TYN L++  CK   L +A MLL+
Sbjct: 605 GWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 148/315 (46%), Gaps = 23/315 (7%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H YS ++H L      S A  LL  +  KKG   +   +  +L +               
Sbjct: 347 HTYSILMHGLCKLGRISSAVRLLREM-EKKGFAPNVVTYTIVLHS--------------- 390

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            +   G  DD       +      + ++G   +I  + +       +G   E+   G +P
Sbjct: 391 -FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            +  +N +++ LC   ++++A+ +F+   + G+ A  +++NT+I+   +     +  RL 
Sbjct: 450 DICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLA 509

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G   DV +Y+ LI  +CK+  +D + +LL EM E+G+ PN+V +  LI   CK 
Sbjct: 510 KEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE 569

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            R+      ++A ++  +M   GL PD +TY  L++G CK G + +AL++ +++    + 
Sbjct: 570 RRV------RDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVH 623

Query: 308 LDNVAFTALISGFCR 322
            D + +  LIS  C+
Sbjct: 624 PDIITYNILISWHCK 638



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 85/213 (39%), Gaps = 34/213 (15%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P   T+ +     C+ G    AL + + M + G   D V +  +I   C  G V EA  +
Sbjct: 173 PTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 232

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L EML +G   D  T+  V+   C  G  +   RL+  M + G +P V TY  L+ GLC+
Sbjct: 233 LNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCR 292

Query: 393 -------------------------------HGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                                           G+L  A  L +TM   G  PD  TY+IL
Sbjct: 293 VRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 422 LEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           + G CK G      +L  E   KG   +   YT
Sbjct: 353 MHGLCKLGRISSAVRLLREMEKKGFAPNVVTYT 385



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 1/195 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           +++ + + + M  +  +F ++LE  G    G+  + ++   +  G   DA++  + +  H
Sbjct: 457 IIYHLCNNEQMEEAEHMFENLLE-EGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
              +       LI  M +      +L    E+ + G  P+   +N+L+ +LCKE +++DA
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 575

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +  +   +GL    V++NTLING CK   +     L   +    + PD+ TY+ LI+ 
Sbjct: 576 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 635

Query: 209 LCKENRLDDAELLLH 223
            CK   LDDA +LL+
Sbjct: 636 HCKVRLLDDAAMLLN 650


>gi|357138636|ref|XP_003570896.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Brachypodium distachyon]
          Length = 500

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 165/336 (49%), Gaps = 7/336 (2%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
           +D L         L  A   FR +R H        C   I   +R   P + + F+ ++ 
Sbjct: 136 IDVLFSACARANKLSQATLAFRAMRAHGLLPRVESCNTFISAALRLKRPEIAVAFFRQMR 195

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN-L 180
               SP  Y  N+++   C  G++ DA  + DE  + G++ T VSFNTLI  +C+    L
Sbjct: 196 RCCISPDTYTANMMLAAFCALGRVADAAKMLDEMPEWGVYRTVVSFNTLIAAYCRGHGGL 255

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +    LK  ME  G  PD  TY+ +I+GLCKE ++  A  LL EM    + PN V +  L
Sbjct: 256 ENALELKRRMEKEGCAPDAVTYNTIIHGLCKERQMRQANQLLIEMRVMRVAPNTVTYNML 315

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I GH       M GD K A ++ +EM  NGL  D +TY  L+ G C+EG ++ +  + +E
Sbjct: 316 IHGHV------MLGDNKTASRVREEMVKNGLQLDIVTYNTLILGLCREGKVKESEHLLQE 369

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           + KRG+E +   F ALI+G  +      A ++L  M K G  P+  T+ +V+  FCKN D
Sbjct: 370 LDKRGLEPNASTFAALITGHWKTQNSERALQLLNVMKKSGFHPNYDTFKIVVSTFCKNKD 429

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            +    ++K++      P     +   +GL K  +L
Sbjct: 430 FEGAVDVMKDILGRCMAPDKALLHEFFDGLSKAKKL 465



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 40/331 (12%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            +VL     +  K+  A + F      GL     S NT I+   + K  +        M 
Sbjct: 136 IDVLFSACARANKLSQATLAFRAMRAHGLLPRVESCNTFISAALRLKRPEIAVAFFRQMR 195

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
              + PD YT + ++   C   R+ DA  +L EM E G+    V F TLI  +C+     
Sbjct: 196 RCCISPDTYTANMMLAAFCALGRVADAAKMLDEMPEWGVYRTVVSFNTLIAAYCRGH--- 252

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE----------------------- 288
             G ++ A ++   M   G  PD +TY  ++ G CKE                       
Sbjct: 253 --GGLENALELKRRMEKEGCAPDAVTYNTIIHGLCKERQMRQANQLLIEMRVMRVAPNTV 310

Query: 289 ------------GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
                       GD ++A  +R+EM+K G++LD V +  LI G CR GKV E+E +L+E+
Sbjct: 311 TYNMLIHGHVMLGDNKTASRVREEMVKNGLQLDIVTYNTLILGLCREGKVKESEHLLQEL 370

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            K GL+P+ +T+  +I    K  +++   +LL  M+  G  P  +T+  +++  CK+   
Sbjct: 371 DKRGLEPNASTFAALITGHWKTQNSERALQLLNVMKKSGFHPNYDTFKIVVSTFCKNKDF 430

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           + A  ++  +L   + PD    +   +G  K
Sbjct: 431 EGAVDVMKDILGRCMAPDKALLHEFFDGLSK 461



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
            + L +   +A  L +       M   G+ P V + +  I+   +  R + A     +M 
Sbjct: 136 IDVLFSACARANKLSQATLAFRAMRAHGLLPRVESCNTFISAALRLKRPEIAVAFFRQMR 195

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
              ++P+      ++   C  GR+       +A K++DEM   G+    +++  L+  +C
Sbjct: 196 RCCISPDTYTANMMLAAFCALGRV------ADAAKMLDEMPEWGVYRTVVSFNTLIAAYC 249

Query: 287 K-EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           +  G LE+AL++++ M K G   D V +  +I G C+  ++ +A ++L EM  + + P+ 
Sbjct: 250 RGHGGLENALELKRRMEKEGCAPDAVTYNTIIHGLCKERQMRQANQLLIEMRVMRVAPNT 309

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY M+I      GD KT  R+ +EM  +G    + TYN L+ GLC+ G++K +  LL  
Sbjct: 310 VTYNMLIHGHVMLGDNKTASRVREEMVKNGLQLDIVTYNTLILGLCREGKVKESEHLLQE 369

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           +   G+ P+  T+  L+ GH K  N E   +L     + G   +Y  +  +VS   K
Sbjct: 370 LDKRGLEPNASTFAALITGHWKTQNSERALQLLNVMKKSGFHPNYDTFKIVVSTFCK 426



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 29/204 (14%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P    +N ++H LCKE +++ A  +  E     +    V++N LI+GH    +    
Sbjct: 269 GCAPDAVTYNTIIHGLCKERQMRQANQLLIEMRVMRVAPNTVTYNMLIHGHVMLGDNKTA 328

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R++  M  +G++ D+ TY+ LI GLC+E ++ ++E LL E+ +RGL PN   F  LI G
Sbjct: 329 SRVREEMVKNGLQLDIVTYNTLILGLCREGKVKESEHLLQELDKRGLEPNASTFAALITG 388

Query: 244 HCKNGRIDMAGDMKEARK-------------IVDEMCTNG----------------LNPD 274
           H K    + A  +    K             +V   C N                 + PD
Sbjct: 389 HWKTQNSERALQLLNVMKKSGFHPNYDTFKIVVSTFCKNKDFEGAVDVMKDILGRCMAPD 448

Query: 275 KITYTILLDGFCKEGDLESALDIR 298
           K       DG  K   L  A D+R
Sbjct: 449 KALLHEFFDGLSKAKKLHLAEDLR 472



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 76/141 (53%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G    +  +N L+  LC+EGK+K+++ +  E  KRGL   A +F  LI GH K +
Sbjct: 334 EMVKNGLQLDIVTYNTLILGLCREGKVKESEHLLQELDKRGLEPNASTFAALITGHWKTQ 393

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N +   +L +VM+ SG  P+  T+  +++  CK    + A  ++ ++  R + P+  +  
Sbjct: 394 NSERALQLLNVMKKSGFHPNYDTFKIVVSTFCKNKDFEGAVDVMKDILGRCMAPDKALLH 453

Query: 239 TLIDGHCKNGRIDMAGDMKEA 259
              DG  K  ++ +A D++ A
Sbjct: 454 EFFDGLSKAKKLHLAEDLRSA 474


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 9/317 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY+   L+  LC+ G+  DA  V     + G      ++NTL+ G+C+   LD  
Sbjct: 73  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 132

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL + M    + PD YTY+ +I GLC   R+ +A  LL +M  RG  P+ V +T L++ 
Sbjct: 133 RRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA 189

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      +    +A +++DEM   G  P+ +TY ++++G C+EG ++ A +    +  
Sbjct: 190 VCK------STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSS 243

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V++T ++ G C   +  + E +  EM++    P++ T+ M++  FC+ G  + 
Sbjct: 244 YGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L++M   G        N ++N +CK G++ +A   L+ M   G  PD I+Y  +L+
Sbjct: 304 AIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 363

Query: 424 GHCKHGNPEDFDKLQSE 440
           G C+    ED  +L  E
Sbjct: 364 GLCRAERWEDAKELLKE 380



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 187/407 (45%), Gaps = 29/407 (7%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA---IQCFRLLRKHYFRI 92
           ++G  S A+      E  GT +     + L+  Y   G LD A   I    +    Y   
Sbjct: 90  RRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYT 149

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDA 148
           P    R L DR          +G  L +LD     G  PSV  + VL+  +CK      A
Sbjct: 150 PI--IRGLCDRG--------RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQA 199

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             V DE   +G     V++N +ING C+   +D+     + +   G +PD  +Y+ ++ G
Sbjct: 200 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKG 259

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   R +D E L  EM E+   PN+V F  L+   C+ G ++       A +++++M  
Sbjct: 260 LCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE------RAIQVLEQMSG 313

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +G   +     I+++  CK+G ++ A      M   G   D +++T ++ G CR  +  +
Sbjct: 314 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 373

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ +L+EM++    P++ T+   I   C+ G  +    L+++M   G    + TYNAL+N
Sbjct: 374 AKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVN 433

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
           G C  G++ +A   L+    +   P+ ITY  LL G C   N E  D
Sbjct: 434 GFCVQGRVDSA---LELFYSMPCKPNTITYTTLLTGLC---NAERLD 474



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 6/336 (1%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I     +P  Y +  ++  LC  G++ +A  + D+   RG   + V++  L+   CK+  
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             +   +   M   G  P++ TY+ +ING+C+E R+DDA   L+ +   G  P+ V +TT
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++ G C   R       ++  ++  EM      P+++T+ +L+  FC+ G +E A+ + +
Sbjct: 256 VLKGLCAAKR------WEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLE 309

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M   G   +      +I+  C+ G+V +A + L  M   G  PD  +YT V+   C+  
Sbjct: 310 QMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 369

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +    LLKEM      P   T+N  +  LC+ G ++ A ML++ M + G   + +TYN
Sbjct: 370 RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYN 429

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            L+ G C  G  +   +L        +   YT+L++
Sbjct: 430 ALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLT 465



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 175/368 (47%), Gaps = 29/368 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+++    P+   F++L+   C+ G ++ A  V ++    G  A     N +IN  C
Sbjct: 272 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTIC 331

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D+ F+  + M   G  PD  +Y+ ++ GLC+  R +DA+ LL EM  +   PN+V
Sbjct: 332 KQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEV 391

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEA-------------RKIVDEMCTNG------------ 270
            F T I   C+ G I+ A  + E                +V+  C  G            
Sbjct: 392 TFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 451

Query: 271 -LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P+ ITYT LL G C    L++A ++  EM+++    + V F  L+S FC+ G + EA
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++ +M++ G  P+  TY  ++D    + +++    LL  + S+G  P + TY++++  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSD 446
           L +  +++ A  +   + DLG+ P  + YN +L   CK  N +   DF       G + +
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631

Query: 447 YACYTSLV 454
              Y +L+
Sbjct: 632 ELTYITLI 639



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 150/312 (48%), Gaps = 13/312 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P+   FN  +  LC++G I+ A M+ ++  + G     V++N L+NG C   
Sbjct: 380 EMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG 439

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D    L   M     +P+  TY+ L+ GLC   RLD A  LL EM ++   PN V F 
Sbjct: 440 RVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFN 496

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+   C+ G +D      EA ++V++M  +G  P+ ITY  LLDG   + + E AL++ 
Sbjct: 497 VLVSFFCQKGLMD------EAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELL 550

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             ++  G+  D V ++++I    R  +V EA +M   +  +G++P    Y  ++   CK 
Sbjct: 551 HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKR 610

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            +T         M S+G +P   TY  L+ GL     LK    LL  +   GV    +  
Sbjct: 611 CNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV----LNK 666

Query: 419 NILLEGHCKHGN 430
           N+L E   K  N
Sbjct: 667 NLLEEWRPKFSN 678



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R+    D+ EA ++VD   + G  PD    T L+   C+ G    A  + +   + G  +
Sbjct: 52  RLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAV 111

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D  A+  L++G+CR G++  A R++  M    + PD  TYT +I   C  G       LL
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLL 168

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M   G  P+V TY  L+  +CK      A  +LD M   G  P+ +TYN+++ G C+ 
Sbjct: 169 DDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCRE 228

Query: 429 GNPED---FDKLQSEKGLVSDYACYTSLV 454
           G  +D   F    S  G   D   YT+++
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVL 257



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 3/203 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRK 87
           LL  + + + + ++A L A +L+      P +V  + L+  +   G +D+AI+    + +
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCA--PNVVTFNVLVSFFCQKGLMDEAIELVEQMME 520

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           H           L+D +         L     ++  G SP +  ++ ++  L +E ++++
Sbjct: 521 HGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 580

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  +F      G+   AV +N ++   CK  N D      + M  +G  P+  TY  LI 
Sbjct: 581 AIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 640

Query: 208 GLCKENRLDDAELLLHEMCERGL 230
           GL  E+ L +   LL E+C RG+
Sbjct: 641 GLANEDFLKETRDLLRELCSRGV 663


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 168/325 (51%), Gaps = 9/325 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V     L++  CK G + +A+ VFDE    GL    V++  L++G+      ++GF L  
Sbjct: 38  VTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFE 97

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ P++YTY+ LI   C+    + A  L  EM  RG+  N V + TLI G C++G
Sbjct: 98  EMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHG 157

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       +A K++D M T G  P  IT+ +L+DG+ K G + +AL    +M   G + 
Sbjct: 158 KL------WDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V +  LI+GFCR   +  A R L +M + GL+P   TYT++ID F +       F +L
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G      TY  L+  LC  G +K+A  L  +M + GV P ++ Y++++ G+ + 
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE 331

Query: 429 GNPEDFDKL---QSEKGLVSDYACY 450
           G+     KL     +KGL+ + A Y
Sbjct: 332 GSSYKALKLIMEMRQKGLIPNSASY 356



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 164/315 (52%), Gaps = 8/315 (2%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  E+   G  P++Y +N L+ + C+ G+ + A+ +FDE   RG+    VS+NTLI 
Sbjct: 92  GFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   L +  +L  +M   G RP + T++ L++G  K  ++ +A    ++M   G  P
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +  LI G C+      A DM  A + + +M   GL P K+TYTIL+D F +E  + 
Sbjct: 212 SAVTYNMLIAGFCR------ARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMG 265

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A +I   M K G+E+D   +  L+   C  G + +A ++ + M + G++P +  Y M+I
Sbjct: 266 KAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMI 325

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             + + G +    +L+ EMR  G +P   +Y   +  LCK  + + A  LLD M+  G+ 
Sbjct: 326 YGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGLQ 385

Query: 413 PDDITYNILLEGHCK 427
             +     LL+   +
Sbjct: 386 TSESICQALLDAKAR 400



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+   +  LMH     G+ +    +F+E  + G+     ++N LI   C+    +  
Sbjct: 68  GLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERA 127

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G+  +V +Y+ LI GLC+  +L DA  LL  M   G  P+ + F  L+DG
Sbjct: 128 RSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDG 187

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K      AG M  A    ++M   G  P  +TY +L+ GFC+  D+  A     +M +
Sbjct: 188 YGK------AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE 241

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+E   V +T LI  F R   + +A  +L  M K GL+ D  TY +++   C  G+ K 
Sbjct: 242 RGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKD 301

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L + M   G  P+   Y+ ++ G  + G    A  L+  M   G++P+  +Y + + 
Sbjct: 302 ARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIR 361

Query: 424 GHCKHGNPEDFDKLQSEKGLVSD 446
             CK       DK Q  + L+ D
Sbjct: 362 VLCKD------DKCQEAEALLDD 378



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           DV   +AL+NG CK   + +A  +  EM   GL PN+V +T L+ G+  +G+       +
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQ------RE 90

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +   + +EM   G+ P+  TY  L+  +C+ G+ E A  +  EM  RGI  + V++  LI
Sbjct: 91  KGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           +G CR GK+ +A ++L  M   G +P   T+ +++D + K G          +M++ G  
Sbjct: 151 AGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQ 210

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           P+  TYN L+ G C+   +  AN  L  M + G+ P  +TY IL++   + 
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 285 FCKEGDLESALDIRKEMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            C  GD+ SAL +     K G   LD  A TAL++G C+GG V EA R+  EM  +GL P
Sbjct: 12  LCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAP 71

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           ++ TYT ++  +  +G  + GF L +EMR  G  P + TYN L+   C+ G+ + A  L 
Sbjct: 72  NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           D M   G+V + ++YN L+ G C+HG   D  KL
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKL 165



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 6/250 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L DA +   ++R    R        L+D   +    +  L F+ ++   G+ PS   +
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+L+   C+   +  A     +  +RGL  T V++  LI+   +  ++ + F + + ME 
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEK 276

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G+  D +TY  L+  LC E  + DA  L   M E+G+ P++VI+  +I G+ +      
Sbjct: 277 AGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE----- 331

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
            G   +A K++ EM   GL P+  +Y + +   CK+   + A  +  +M++ G++     
Sbjct: 332 -GSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGLQTSESI 390

Query: 313 FTALISGFCR 322
             AL+    R
Sbjct: 391 CQALLDAKAR 400



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 4/217 (1%)

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITY-TILLDGFCKEGDLESALDIRKEMIKRGIE 307
           R+  AGD++ A  ++     +G     +T  T L++G CK GD+  A  +  EM   G+ 
Sbjct: 11  RLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLA 70

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V +TAL+ G+   G+  +   +  EM + G++P+  TY  +I  +C+ G+ +    L
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM   G +  V +YN L+ GLC+HG+L +A  LLD M   G  P  IT+N+L++G+ K
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGK 190

Query: 428 HG---NPEDFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
            G   N   F       G       Y  L++   + R
Sbjct: 191 AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRAR 227


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 213/431 (49%), Gaps = 21/431 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G  ++A  +  +L   G        +AL++ Y   G L  A   F ++       P  
Sbjct: 195 KEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM-------PLM 247

Query: 96  GCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
           GC+        LI  +         L  +L +   G SP+V  F  L+  LCK G++ DA
Sbjct: 248 GCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDA 307

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           +++FD   + G+  + +++N +I G+ K   +++  ++K +ME +G  PD +TY+ LI G
Sbjct: 308 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYG 367

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC + + ++AE LL+   + G TP  V FT LI+G+C      MA    +A ++ ++M +
Sbjct: 368 LC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYC------MAEKFDDALRMKNKMMS 420

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +    D   +  L++   K+  L+ A ++  E+   G+  + + +T++I G+C+ GKV  
Sbjct: 421 SKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 480

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L+ M + G +P+  TY  ++    K+        LL +M+ DG +P V TY  L+ 
Sbjct: 481 ALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQ 540

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA 448
           G C      NA  L + M   G+ PD+  Y +L +  CK G  E+       KG+     
Sbjct: 541 GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKV 600

Query: 449 CYTSLVSKSSK 459
            YT+L+   SK
Sbjct: 601 YYTTLIDGFSK 611



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 160/307 (52%), Gaps = 10/307 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + +N LM+ L K+ K+  A  +  +  K G+    +++ TL+ G C   + D  
Sbjct: 492 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 551

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +ME +G++PD + Y+ L + LCK  R ++A   +     +G+    V +TTLIDG
Sbjct: 552 FRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDG 608

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G  D A  + E  +++DE CT    PD  TY++LL   CK+  L  AL I  +M  
Sbjct: 609 FSKAGNTDFAATLIE--RMIDEGCT----PDSYTYSVLLHALCKQKRLNEALPILDQMSL 662

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RGI+    A+T LI    R GK   A+RM  EM   G KP   TYT+ I+ +CK G  + 
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ +M  +G  P V TYN L++G    G +  A   L  M+     P+  TY +LL+
Sbjct: 723 AEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLK 782

Query: 424 GHCKHGN 430
            H   GN
Sbjct: 783 -HLLKGN 788



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 185/384 (48%), Gaps = 40/384 (10%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           ++  +L+ G  P  +  N L+   C+ G+++ A  +F      G      S+  LI G C
Sbjct: 205 YFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLC 264

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            AK + +   L  +M+  G  P+V  ++ LI+GLCK  R+ DA LL   M + G+ P+ +
Sbjct: 265 DAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVM 324

Query: 236 IFTTLIDGHCKNGRIDMAGDMKE----------------------------ARKIVDEMC 267
            +  +I G+ K GR++ A  +KE                            A ++++   
Sbjct: 325 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 384

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G  P  +T+T L++G+C     + AL ++ +M+    +LD   F  LI+   +  ++ 
Sbjct: 385 KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLK 444

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA+ +L E+   GL P+  TYT +ID +CK+G       +LK M  DG  P   TYN+LM
Sbjct: 445 EAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLM 504

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD------KLQSEK 441
            GL K  +L  A  LL  M   G++P+ ITY  LL+G C   +  DFD      ++  + 
Sbjct: 505 YGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQC---DEHDFDNAFRLFEMMEQN 561

Query: 442 GLVSD---YACYTSLVSKSSKYRQ 462
           GL  D   YA  T  + K+ +  +
Sbjct: 562 GLKPDEHAYAVLTDALCKAGRAEE 585



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 165/327 (50%), Gaps = 12/327 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           VF  L++ L K+ ++K+A+ + +E    GL    +++ ++I+G+CK+  +D    +  +M
Sbjct: 429 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 488

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G +P+ +TY++L+ GL K+ +L  A  LL +M + G+ PN + +TTL+ G C     
Sbjct: 489 ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH-- 546

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               D   A ++ + M  NGL PD+  Y +L D  CK G  E A      ++++G+ L  
Sbjct: 547 ----DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTK 599

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +T LI GF + G    A  ++  M+  G  PD  TY++++   CK         +L +
Sbjct: 600 VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQ 659

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    +  Y  L++ + + G+  +A  + + M   G  P   TY + +  +CK G 
Sbjct: 660 MSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR 719

Query: 431 PEDFDKL---QSEKGLVSDYACYTSLV 454
            ED + L      +G+  D   Y  L+
Sbjct: 720 LEDAEDLILKMEREGVAPDVVTYNILI 746



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 22/326 (6%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++D G +P  Y ++VL+H LCK+ ++ +A  + D+   RG+  T  ++  LI+   +   
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            D   R+ + M  SG +P   TY+  IN  CKE RL+DAE L+ +M   G+ P+ V +  
Sbjct: 685 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 744

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL----------------D 283
           LIDG    G ID A      +++V   C     P+  TY +LL                 
Sbjct: 745 LIDGCGHMGYIDRA--FSTLKRMVGASC----EPNYWTYCLLLKHLLKGNLAYVRSVDTS 798

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G     +L+    + + M+K G+      +++LI+GFC+ G++ EA  +L  M   GL P
Sbjct: 799 GMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSP 858

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           ++  YT++I C C     +     +  M   G  P +E+Y  L+ GLC  G  +    L 
Sbjct: 859 NEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHG 429
             +L+LG   D++ + IL +G  K G
Sbjct: 919 CDLLELGYNHDEVAWKILNDGLLKAG 944



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 195/438 (44%), Gaps = 24/438 (5%)

Query: 20  HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAI 79
           H   S A  LLHL+  ++       L  S+L    T               D+    DAI
Sbjct: 88  HTADSHAA-LLHLLSRRRAPAQYERLVVSMLNCSDTA-------------EDMRVSADAI 133

Query: 80  QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
           Q  R        +  +     +  + R ++       Y +++  G  P    +N ++   
Sbjct: 134 QAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSY 193

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           CKEG +  A   F    + GL     + N L+ G+C+   L +   L  +M   G + + 
Sbjct: 194 CKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNE 253

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
           Y+Y+ LI GLC    +  A +L   M   G +PN   FT LI G CK+GR+   GD   A
Sbjct: 254 YSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV---GD---A 307

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
           R + D M  NG+ P  +TY  ++ G+ K G +  AL I++ M K G   D+  +  LI G
Sbjct: 308 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYG 367

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C   K  EAE +L   +K G  P   T+T +I+ +C         R+  +M S      
Sbjct: 368 LC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 426

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDK 436
           ++ +  L+N L K  +LK A  LL+ +   G+VP+ ITY  +++G+CK G  +   +  K
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 437 LQSEKGLVSDYACYTSLV 454
           +    G   +   Y SL+
Sbjct: 487 MMERDGCQPNAWTYNSLM 504



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 145/323 (44%), Gaps = 29/323 (8%)

Query: 91  RIPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++  RG +C       LID M+R          Y E+   G+ PS   + V ++  CKEG
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 718

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +++DA+ +  +  + G+    V++N LI+G      +D  F     M G+   P+ +TY 
Sbjct: 719 RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYC 778

Query: 204 ALINGLCKEN----------------RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            L+  L K N                 LD    LL  M + GL P    +++LI G CK 
Sbjct: 779 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 838

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR++      EA  ++D MC  GL+P++  YT+L+   C     E AL     M + G +
Sbjct: 839 GRLE------EACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQ 892

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
               ++  L+ G C  G   + + +  ++L++G   D+  + ++ D   K G     F++
Sbjct: 893 PQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQM 952

Query: 368 LKEMRSDGHLPAVETYNALMNGL 390
           L  M       + +TY  + N +
Sbjct: 953 LSIMEKRYCCISSQTYALVTNKM 975


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 203/458 (44%), Gaps = 104/458 (22%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ---------- 149
           L+  + R  +    +  Y  +L  G  P++ ++N +++ LCK+G + DA+          
Sbjct: 186 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE 245

Query: 150 -------------------------MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
                                     VF++  K G     V+++TLING C +  ++E F
Sbjct: 246 MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAF 305

Query: 185 -----------------------------------RLKSVMEGSGMRPDVYTYSALINGL 209
                                              RL   M+  G  P+VYTY+ALI+GL
Sbjct: 306 DLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGL 365

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------- 253
           C    L  A  L H M   G+ PN V +  LI+   +N RI  A                
Sbjct: 366 CVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNI 425

Query: 254 -------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
                        GD K+A  +++ M   G + + +TY  ++ G+C  G+  SAL I   
Sbjct: 426 VTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDL 485

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G + D  ++T LI GFC+  K+  A  +  EM+  GL P++ TYT +ID +CK+  
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
             T   LL+ M+  G  P V+TYN L++GL K      A  L   M++ G+ P+ +TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 421 LLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLV 454
           +++G CK+G+     E F+K+  E+G + +   Y+SL+
Sbjct: 606 MIDGLCKNGSTSLALEMFNKM-IEQGCLPNLLTYSSLI 642



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            ++++ + G  P+VY +  L+  LC  G +K A  +F    + G+    V++N LIN   
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILV 401

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           + + +   F + ++M  +G  P++ TY+ +I G C       A L+++ M +RG + N V
Sbjct: 402 ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLV 461

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T+I G+C       +G+   A +I+D M   G  PD+ +YT L+ GFCK   +ESA 
Sbjct: 462 TYNTIIKGYCD------SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM+  G+  + V +TALI G+C+  K+  A  +L  M + G +P+  TY ++I   
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K  +      L K M  +G  P V TY A+++GLCK+G    A  + + M++ G +P+ 
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +TY+ L+    + G  E+ + L +E    GL+ D   Y  ++
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 161/301 (53%), Gaps = 6/301 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP++  +N ++   C  G  K A +V +   +RG  A  V++NT+I G+C + N    
Sbjct: 420 GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 479

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+  +M   G +PD ++Y+ LI G CK ++++ A  L +EM + GL PN+V +T LIDG
Sbjct: 480 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 539

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK+ ++D       A  +++ M  +G  P+  TY +L+ G  K+ +   A ++ K MI+
Sbjct: 540 YCKDEKLD------TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  + V +TA+I G C+ G    A  M  +M++ G  P+  TY+ +I    + G  + 
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  E+   G +P   TY  ++      G++++A   L  M+  G  P   TY +L++
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 424 G 424
           G
Sbjct: 714 G 714



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 11/346 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T+ F   +   G    ++ ++ L+  L + G        +      G+    + +N +IN
Sbjct: 164 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 223

Query: 173 GHCKAKNL-DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             CK  N+ D    +K V E S M PD +TY+++I G C+++ LD A  + ++M + G  
Sbjct: 224 ALCKDGNVADAETIMKKVFE-SEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 282

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN V ++TLI+G C +GR++      EA  ++ EM  +G+ P   T T  +   C  G  
Sbjct: 283 PNTVTYSTLINGLCDSGRVN------EAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           E A  +  +M  +G E +   +TALISG C  G +  A  +   M + G+ P+  TY  +
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I+   +N   K  F +L  M  +G  P + TYN ++ G C  G  K A ++++ ML  G 
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 412 VPDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
             + +TYN +++G+C  GN     +   L  + G   D   YT L+
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 171/434 (39%), Gaps = 91/434 (20%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P  + +  L+   CK  K++ A  +F+E    GL    V++  LI+G+CK + LD
Sbjct: 488 DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLD 547

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M+ SG RP+V TY+ LI+GL K+N    AE L   M E G+ PN V +T +I
Sbjct: 548 TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DG CKNG   +A                             G ++EA  +  E+  +GL 
Sbjct: 608 DGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 667

Query: 273 PDKIT-----------------------------------YTILLDGF------------ 285
           PD+IT                                   Y +L+ G             
Sbjct: 668 PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLA 727

Query: 286 --------CKEGDLESALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERML 333
                   C  G   +  D    M  +  ELD         AL+S     G+  EA  +L
Sbjct: 728 ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M+  GL PD   Y  ++    +  +      + K M + G    +  Y  L+  LC+ 
Sbjct: 788 GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQL 847

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
            + K A +  + ML     PDD+   +L++G  + G  +   +F  +   +  +  +  Y
Sbjct: 848 HRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIY 907

Query: 451 TSLVSKSSKYRQKR 464
           T L  ++SK R  +
Sbjct: 908 TILAREASKKRSWK 921



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 136/317 (42%), Gaps = 18/317 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    ++ L  + ++++ G  P++  ++ L+  L +EGK+++A+ +F E  + G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++  +I  +  +  ++  F     M  +G +P ++TY  LI GL  E  L D  
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 725

Query: 220 LL----LHEMCERGLTPNDVIFTTLIDG-----------HCKNG---RIDMAGDMKEARK 261
           L     +   C  G    D    +++               +N     +  AG   EA +
Sbjct: 726 LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 785

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++  M + GL PD+  Y  LL    +  +++ A+ + K M  +G E+    +  LI   C
Sbjct: 786 LLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 845

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           +  +  EA      ML     PDD    ++ID   ++G        L  M +  ++P+  
Sbjct: 846 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFH 905

Query: 382 TYNALMNGLCKHGQLKN 398
            Y  L     K    K+
Sbjct: 906 IYTILAREASKKRSWKH 922



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           M      +D +  +GL      Y+ LL    + G   + +D    M+  G++ + + + A
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I+  C+ G V +AE +++++ +  + PD  TYT +I   C+  D  +  ++  +M  +G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             P   TY+ L+NGLC  G++  A  L+  M+  G++P   T    +   C  G  ED  
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 436 KL---QSEKGLVSDYACYTSLVS 455
           +L      KG   +   YT+L+S
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALIS 363


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 9/317 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY+   L+  LC+ G+  DA  V     + G      ++NTL+ G+C+   LD  
Sbjct: 73  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 132

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL + M    + PD YTY+ +I GLC   R+ +A  LL +M  RG  P+ V +T L++ 
Sbjct: 133 RRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA 189

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      +    +A +++DEM   G  P+ +TY ++++G C+EG ++ A +    +  
Sbjct: 190 VCK------STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSS 243

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V++T ++ G C   +  + E +  EM++    P++ T+ M++  FC+ G  + 
Sbjct: 244 YGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVER 303

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L++M   G        N ++N +CK G++ +A   L+ M   G  PD I+Y  +L+
Sbjct: 304 AIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 363

Query: 424 GHCKHGNPEDFDKLQSE 440
           G C+    ED  +L  E
Sbjct: 364 GLCRAERWEDAKELLKE 380



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 187/407 (45%), Gaps = 29/407 (7%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA---IQCFRLLRKHYFRI 92
           ++G  S A+      E  GT +     + L+  Y   G LD A   I    +    Y   
Sbjct: 90  RRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYT 149

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILD----YGYSPSVYVFNVLMHKLCKEGKIKDA 148
           P    R L DR          +G  L +LD     G  PSV  + VL+  +CK      A
Sbjct: 150 PI--IRGLCDRG--------RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQA 199

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             V DE   +G     V++N +ING C+   +D+     + +   G +PD  +Y+ ++ G
Sbjct: 200 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKG 259

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC   R +D E L  EM E+   PN+V F  L+   C+ G ++       A +++++M  
Sbjct: 260 LCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE------RAIQVLEQMSG 313

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +G   +     I+++  CK+G ++ A      M   G   D +++T ++ G CR  +  +
Sbjct: 314 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 373

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ +L+EM++    P++ T+   I   C+ G  +    L+++M   G    + TYNAL+N
Sbjct: 374 AKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVN 433

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
           G C  G++ +A   L+    +   P+ ITY  LL G C   N E  D
Sbjct: 434 GFCVQGRVDSA---LELFYSMPCKPNTITYTTLLTGLC---NAERLD 474



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 6/336 (1%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I     +P  Y +  ++  LC  G++ +A  + D+   RG   + V++  L+   CK+  
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             +   +   M   G  P++ TY+ +ING+C+E R+DDA   L+ +   G  P+ V +TT
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++ G C   R       ++  ++  EM      P+++T+ +L+  FC+ G +E A+ + +
Sbjct: 256 VLKGLCAAKR------WEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLE 309

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M   G   +      +I+  C+ G+V +A + L  M   G  PD  +YT V+   C+  
Sbjct: 310 QMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 369

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +    LLKEM      P   T+N  +  LC+ G ++ A ML++ M + G   + +TYN
Sbjct: 370 RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYN 429

Query: 420 ILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            L+ G C  G  +   +L        +   YT+L++
Sbjct: 430 ALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLT 465



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 176/368 (47%), Gaps = 29/368 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+++    P+   F++L+   C+ G ++ A  V ++    G  A     N +IN  C
Sbjct: 272 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTIC 331

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D+ F+  + M   G  PD  +Y+ ++ GLC+  R +DA+ LL EM  +   PN+V
Sbjct: 332 KQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEV 391

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEA-------------RKIVDEMCTNG------------ 270
            F T I   C+ G I+ A  + E                +V+  C  G            
Sbjct: 392 TFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 451

Query: 271 -LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P+ ITYT LL G C    L++A ++  EM+++    + V F  L+S FC+ G + EA
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++ +M++ G  P+  TY  ++D   K+ +++    LL  + S+G  P + TY++++  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSD 446
           L +  +++ A  +   + DLG+ P  + YN +L   CK  N +   DF       G + +
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631

Query: 447 YACYTSLV 454
              Y +L+
Sbjct: 632 ELTYITLI 639



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 151/312 (48%), Gaps = 13/312 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P+   FN  +  LC++G I+ A M+ ++  + G     V++N L+NG C   
Sbjct: 380 EMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG 439

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D    L   M     +P+  TY+ L+ GLC   RLD A  LL EM ++   PN V F 
Sbjct: 440 RVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFN 496

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+   C+ G +D      EA ++V++M  +G  P+ ITY  LLDG  K+ + E AL++ 
Sbjct: 497 VLVSFFCQKGLMD------EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 550

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             ++  G+  D V ++++I    R  +V EA +M   +  +G++P    Y  ++   CK 
Sbjct: 551 HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKR 610

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            +T         M S+G +P   TY  L+ GL     LK    LL  +   GV    +  
Sbjct: 611 CNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV----LNK 666

Query: 419 NILLEGHCKHGN 430
           N+L E   K  N
Sbjct: 667 NLLEEWRPKFSN 678



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R+    D+ EA ++VD   + G  PD    T L+   C+ G    A  + +   + G  +
Sbjct: 52  RLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAV 111

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D  A+  L++G+CR G++  A R++  M    + PD  TYT +I   C  G       LL
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLL 168

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M   G  P+V TY  L+  +CK      A  +LD M   G  P+ +TYN+++ G C+ 
Sbjct: 169 DDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCRE 228

Query: 429 GNPED---FDKLQSEKGLVSDYACYTSLV 454
           G  +D   F    S  G   D   YT+++
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVL 257



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRK 87
           LL  + + + + ++A L A +L+      P +V  + L+  +   G +D+AI+    + +
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCA--PNVVTFNVLVSFFCQKGLMDEAIELVEQMME 520

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           H           L+D + +       L     ++  G SP +  ++ ++  L +E ++++
Sbjct: 521 HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 580

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  +F      G+   AV +N ++   CK  N D      + M  +G  P+  TY  LI 
Sbjct: 581 AIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 640

Query: 208 GLCKENRLDDAELLLHEMCERGL 230
           GL  E+ L +   LL E+C RG+
Sbjct: 641 GLANEDFLKETRDLLRELCSRGV 663


>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
 gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 187/391 (47%), Gaps = 27/391 (6%)

Query: 46  FASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL---RKHYFRIPARGCRCLID 102
           F   LET GT + G   +             D +   RLL   ++   R+       +ID
Sbjct: 271 FMPTLETFGTMINGFCKEG------------DFVASDRLLSEVKERGLRVSVWFLNNIID 318

Query: 103 RMMRTNL---PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
              R      P  ++G+   I+     P V  +N+L+++LCKEGK + A    DE  K+G
Sbjct: 319 AKYRHGYKVDPAESIGW---IIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKG 375

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +S+  LI  +CK+K  D   +L   M   G +PD+ TY  LI+GL     +DDA 
Sbjct: 376 LIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAV 435

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  ++ +RG++P+  I+  L+ G CK GR         A+ +  EM    + PD   Y 
Sbjct: 436 NMKVKLIDRGVSPDAAIYNMLMSGLCKTGR------FLPAKLLFSEMLDRNILPDAYVYA 489

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DGF + GD + A  +    +++G+++D V   A+I GFCR G + EA   +  M + 
Sbjct: 490 TLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEE 549

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L PD  TY+ +ID + K  D  T  ++ + M  +   P V TY +L+NG C  G  K A
Sbjct: 550 HLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMA 609

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
                 M    +VP+ +TY  L+    K  +
Sbjct: 610 EETFKEMQLRDLVPNVVTYTTLIRSLAKESS 640



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 197/413 (47%), Gaps = 18/413 (4%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTN 108
           L      L    L  ++  Y + G L  A++ +  + + Y  +P    C  L+  ++++ 
Sbjct: 125 LRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKSR 184

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
                   Y E+ D G S   Y   +L+  +C EGK++  + + +    +G     V +N
Sbjct: 185 RLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYN 244

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           T+I G+CK  +++  + +   ++  G  P + T+  +ING CKE     ++ LL E+ ER
Sbjct: 245 TIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKER 304

Query: 229 GLTPNDVIFTTLIDGHCKNG-RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           GL  +      +ID   ++G ++D A       + +  +  N   PD  TY IL++  CK
Sbjct: 305 GLRVSVWFLNNIIDAKYRHGYKVDPA-------ESIGWIIANDCKPDVATYNILINRLCK 357

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           EG  E A+    E  K+G+  +N+++  LI  +C+  +   A ++L +M + G KPD  T
Sbjct: 358 EGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVT 417

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y ++I     +G       +  ++   G  P    YN LM+GLCK G+   A +L   ML
Sbjct: 418 YGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEML 477

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDK------LQSEKGLVSDYACYTSLV 454
           D  ++PD   Y  L++G  + G   DFD+      L  EKG+  D   + +++
Sbjct: 478 DRNILPDAYVYATLIDGFIRSG---DFDEARKVFSLSVEKGVKVDVVHHNAMI 527



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 169/345 (48%), Gaps = 25/345 (7%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           ++++D G SP   ++N+LM  LCK G+   A+++F E   R +   A  + TLI+G  ++
Sbjct: 439 VKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRS 498

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            + DE  ++ S+    G++ DV  ++A+I G C+   LD+A   ++ M E  L P+   +
Sbjct: 499 GDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTY 558

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           +T+IDG+ K        DM  A KI   M  N   P+ +TYT L++GFC +GD + A + 
Sbjct: 559 STIIDGYVKQ------QDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEET 612

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE-MLKVGLKPDDATYTMVIDCFC 356
            KEM  R +  + V +T LI    +    +E      E M+     P++ T+  ++  F 
Sbjct: 613 FKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFV 672

Query: 357 K--------------NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           K              +G +         M+SDG       YN+ +  LC HG +K A M 
Sbjct: 673 KKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMF 732

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ----SEKGL 443
            D M+  G  PD +++  +L G C  GN + +  +      EKGL
Sbjct: 733 QDKMVKKGFSPDPVSFAAILHGFCVVGNSKQWRNMDFCNLGEKGL 777


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 213/449 (47%), Gaps = 49/449 (10%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           L++ G  +       L+  Y  +G  + A++ F  +++   R        ++  MMR ++
Sbjct: 118 LKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDV 177

Query: 110 P-TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              +    Y E+L    SP++Y F +LM  L K+G+  DAQ +FD+   RG+    V++ 
Sbjct: 178 FFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYT 237

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            LI+G C+  + ++  +L   M+ SG  PD   ++AL++G CK  R+ +A  LL    + 
Sbjct: 238 ILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKD 297

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G       +++LIDG  +  R        +A ++   M    + PD I YTIL+ G  K 
Sbjct: 298 GFVLGLRGYSSLIDGLFRARR------YTQAFELYANMLKRNIKPDIILYTILIQGLSKA 351

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G +E AL + + M  +GI  D   + A+I   C  G + E   +  EM +    PD  T+
Sbjct: 352 GKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTH 411

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL----- 403
           T++I   C+NG  +    +  E+   G  P+V T+NAL++GLCK G+LK A +LL     
Sbjct: 412 TILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEV 471

Query: 404 ------------------DTML----------------DLGVVPDDITYNILLEGHCKHG 429
                             DTM+                D G  PD ++YN+L+ G C+ G
Sbjct: 472 GRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREG 531

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVS 455
           + +   KL +    KGL  D   Y +L++
Sbjct: 532 DIDGALKLLNVLQLKGLSPDSVTYNTLIN 560



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 148/312 (47%), Gaps = 7/312 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G S   Y F VL+    K G  + A   F    +        ++N ++    +  
Sbjct: 117 ELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMRED 176

Query: 179 NLDE-GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
                 F + + M      P++YT+  L++GL K+ R  DA+ +  +M  RG++PN V +
Sbjct: 177 VFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTY 236

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T LI G C+ G        ++ARK+  EM  +G  PD + +  LLDGFCK G +  A ++
Sbjct: 237 TILISGLCQRG------SPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFEL 290

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +   K G  L    +++LI G  R  +  +A  +   MLK  +KPD   YT++I    K
Sbjct: 291 LRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSK 350

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +   +LL+ M S G  P    YNA++  LC  G L+    L   M +    PD  T
Sbjct: 351 AGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACT 410

Query: 418 YNILLEGHCKHG 429
           + IL+   C++G
Sbjct: 411 HTILICSMCRNG 422



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 191/440 (43%), Gaps = 46/440 (10%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           ++  G +   +  +AL+  +  LG + +A +  RL  K  F +  RG   LID + R   
Sbjct: 259 MKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARR 318

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
            T     Y  +L     P + ++ +L+  L K GKI+DA  +      +G+      +N 
Sbjct: 319 YTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNA 378

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I   C    L+EG  L+  M  +   PD  T++ LI  +C+   +  AE +  E+ + G
Sbjct: 379 VIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSG 438

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMA---------------------------------GDM 256
            +P+   F  LIDG CK+G +  A                                 G +
Sbjct: 439 CSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMVQSGSI 498

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +A K +      G +PD ++Y +L++GFC+EGD++ AL +   +  +G+  D+V +  L
Sbjct: 499 LKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTL 558

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G  R G+  EA ++     K   +   A Y  ++   C+       F L  +      
Sbjct: 559 INGLHRVGREEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRRRKLLVAFNLWMKYLKKIS 616

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT---YNILLEGHCKHGNPED 433
               ET N +     K G+ + A   L  +++L    D++T   Y I L G C+ G   +
Sbjct: 617 CLDDETANEIEQCF-KEGETERA---LRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHE 672

Query: 434 ----FDKLQSEKGLVSDYAC 449
               F  L+ +K LV+  +C
Sbjct: 673 ALMVFSVLREKKILVTPPSC 692



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 183/447 (40%), Gaps = 87/447 (19%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F L L  YS+++  L   + ++QA +L                +A++L+      P ++L
Sbjct: 299 FVLGLRGYSSLIDGLFRARRYTQAFEL----------------YANMLKRNIK--PDIIL 340

Query: 63  DALMIVYVD-LGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTL 114
             ++I  +   G ++DA++  R        +P++G          +I  +    L     
Sbjct: 341 YTILIQGLSKAGKIEDALKLLR-------SMPSKGITPDTYCYNAVIKALCGRGLLEEGR 393

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
              LE+ +    P      +L+  +C+ G ++ A+ +F E  K G   +  +FN LI+G 
Sbjct: 394 SLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGL 453

Query: 175 CKAKNLDEGFRLKSVME---------------------------------------GSGM 195
           CK+  L E   L   ME                                        +G 
Sbjct: 454 CKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGN 513

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PD+ +Y+ LING C+E  +D A  LL+ +  +GL+P+ V + TLI+G  + GR + A  
Sbjct: 514 SPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFK 573

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +  A+        +        Y  L+   C+   L  A ++  + +K+   LD+     
Sbjct: 574 LFYAK--------DDFRHSPAVYRSLMTWSCRRRKLLVAFNLWMKYLKKISCLDDETANE 625

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDAT---YTMVIDCFCKNGDTKTGFRLLKEMR 372
           +   F  G    E ER LR ++++  + D+ T   YT+ +   C++G       +   +R
Sbjct: 626 IEQCFKEG----ETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLR 681

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNA 399
               L    +   L++GLCK  QL  A
Sbjct: 682 EKKILVTPPSCVKLIHGLCKREQLDAA 708



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 1/172 (0%)

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           ++ +++D   ++   +      +E+   G+ +D+  F  LIS + + G   +A      M
Sbjct: 94  SFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRM 153

Query: 337 LKVGLKPDDATYTMVIDCFCKNGD-TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
            +   +PD  TY +++    +        F +  EM      P + T+  LM+GL K G+
Sbjct: 154 KEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGR 213

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDY 447
             +A  + D M   G+ P+ +TY IL+ G C+ G+PED  KL  E     +Y
Sbjct: 214 TSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNY 265


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 185/358 (51%), Gaps = 18/358 (5%)

Query: 87  KHYFRIPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
           K ++RI   GC+        L+D ++  N   +    Y  +   G  P+V+ +N+L+  L
Sbjct: 130 KMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKAL 189

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           CK  ++  A  +F E   +G    AV++ T+++  CKA  +D+   L         +P V
Sbjct: 190 CKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSV 244

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
             Y+ALI+G+CKE R++ A  LL EM + G+ PN V ++ +I+  C +G +++A      
Sbjct: 245 PVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA------ 298

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
             +  +M   G + +  T+T L+ G    G L  ALD+ K MI+ G E + VA+  LI G
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C  G + EA ++  +M + G  P+  TY+++ID F K+GD          M S G  P 
Sbjct: 359 LCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPN 418

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           V TY  +++ LCK+     AN L++ M   G  P+ IT+N  ++G C +G  E   KL
Sbjct: 419 VVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKL 476



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 172/375 (45%), Gaps = 45/375 (12%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + PSV V+N L+  +CKEG+I+ A  +  E    G+    VS++ +IN  C + N++  F
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L + M   G   +++T++ LI G     +L +A  L   M + G  PN V + TLI G 
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C NG ++      EA ++ D+M  +G  P+  TY+IL+DGF K GDL  A +    MI  
Sbjct: 360 CSNGSLE------EALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISH 413

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   + V +T ++   C+     +A  ++ +M   G  P+  T+   I   C NG  +  
Sbjct: 414 GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWA 473

Query: 365 FRLLKEMRSDGHLPAVETYNALMN-----------------------------------G 389
            +LL+ M+  G LP + TYN L++                                   G
Sbjct: 474 MKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVS 445
             + G +  A  L    L  G  PD ITYN ++  +CK G      +  +++ S K    
Sbjct: 534 FSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHP 593

Query: 446 DYACYTSLVSKSSKY 460
           D   YTSL+  +  +
Sbjct: 594 DIITYTSLIWGACNW 608



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 168/337 (49%), Gaps = 16/337 (4%)

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           H F    +GC       MR  L      + L I D G  P+V  +N L+H LC  G +++
Sbjct: 315 HTFTPLIKGC------FMRGKLYEALDLWKLMIQD-GCEPNVVAYNTLIHGLCSNGSLEE 367

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  V D+  + G      +++ LI+G  K+ +L       + M   G RP+V TY+ +++
Sbjct: 368 ALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVD 427

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
            LCK +  D A  L+ +M   G TPN + F T I G C NGR++ A       K+++ M 
Sbjct: 428 VLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWA------MKLLERMQ 481

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
            +G  P+  TY  LLD   +    E A  + +E+  R ++ + V +  ++ GF R G + 
Sbjct: 482 GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMG 541

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS--DGHLPAVETYNA 385
           EA ++  + L  G  PD  TY  +I  +CK G  K   +L++ + S  + H P + TY +
Sbjct: 542 EALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWH-PDIITYTS 600

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           L+ G C    ++ A   LD  ++ G+ P+  T+N L+
Sbjct: 601 LIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 169/394 (42%), Gaps = 45/394 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID M +     V +    E++D G  P+V  ++ +++ LC  G ++ A  +F +   RG
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             A   +F  LI G      L E   L  +M   G  P+V  Y+ LI+GLC    L++A 
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  +M   G  PN   ++ LIDG  K      +GD+  A +  + M ++G  P+ +TYT
Sbjct: 370 QVCDQMQRSGCLPNVTTYSILIDGFAK------SGDLVGASETWNRMISHGCRPNVVTYT 423

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CK    + A  + ++M   G   + + F   I G C  G+V  A ++L  M   
Sbjct: 424 CMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGH 483

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P+  TY  ++D   +    +  F L +E+ +    P + TYN ++ G  + G +  A
Sbjct: 484 GCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEA 543

Query: 400 NMLLDTMLDLGVVPDDITYNI------------------------------------LLE 423
             L    L  G  PD ITYN                                     L+ 
Sbjct: 544 LQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIW 603

Query: 424 GHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           G C   N E+   F      +G+  ++A + +LV
Sbjct: 604 GACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 54/397 (13%)

Query: 108 NLPTVTLGFYLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
           NL +V LGF+  I +   +  +   + V++ +L +E ++   Q +  +    G++     
Sbjct: 53  NLSSV-LGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL 111

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           F  +ING+ +  + ++  ++   +   G +P V  Y+ L++ L  EN+      L   M 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
           + GL PN   +  L+   CKN R+D       A K+  EM   G  PD +TYT ++   C
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVD------AAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K G ++ A    +E+  R  +     + ALI G C+ G++  A ++L EM+  G+ P+  
Sbjct: 226 KAGKIDDA----RELAGR-FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV 280

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMR---------------------------------- 372
           +Y+ +I+  C +G+ +  F L  +M                                   
Sbjct: 281 SYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM 340

Query: 373 -SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN- 430
             DG  P V  YN L++GLC +G L+ A  + D M   G +P+  TY+IL++G  K G+ 
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL 400

Query: 431 ---PEDFDKLQSE--KGLVSDYACYTSLVSKSSKYRQ 462
               E ++++ S   +  V  Y C   ++ K+S + Q
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQ 437



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  ++ +G  P+V  +  ++  LCK      A  + ++    G     ++FNT I G C 
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCG 466

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              ++   +L   M+G G  P++ TY+ L++ L + N+ ++A  L  E+  R L PN V 
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T++ G  +      AG M EA ++  +    G  PD ITY  ++  +CK+G ++ A  
Sbjct: 527 YNTVLYGFSR------AGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ 580

Query: 297 IRKEMIK-RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           + + +   +    D + +T+LI G C    + EA   L + +  G+ P+ AT+  ++ CF
Sbjct: 581 LVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 141/505 (27%), Positives = 230/505 (45%), Gaps = 65/505 (12%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL--V 61
           RL L  +S +   L +  +H+ A  LL  + S     +  ++F ++ + R   LP     
Sbjct: 84  RLRLFLFSALSPRLRSRPLHAHAVSLLLRLSSH----ADEAMFDALADARAAGLPASSSA 139

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKH----------------------------YFRIP 93
             AL+  +   G   DA+Q F  + +                             Y R+ 
Sbjct: 140 FAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMV 199

Query: 94  ARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
           A GC         L+D + +  +    L  + E+LD G  P+V ++ VL+  LC  GKI 
Sbjct: 200 AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKID 259

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A  +      +G     V++N  ++G CK   ++E F+   +++  G    +  YS LI
Sbjct: 260 EAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLI 319

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +GL +  R D+       M ER ++P+ V++T +I G  + GRI+      +A   +D M
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIE------DALSFLDVM 373

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G  PD   Y  +L   C  GDLE A  +R EM++  + LD+   T +I G C+ G V
Sbjct: 374 KKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLV 433

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV------ 380
            EA ++  EM + G  P   TY  +ID F + G  +    L  +M   G+ P++      
Sbjct: 434 DEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM-GNNPSLFLRLTL 492

Query: 381 --------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
                   E+   L++ +C+ GQ+  A  LL +++D GVVPD +TYN L+ G CK  N +
Sbjct: 493 GANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  E   KG+  D   Y +L+
Sbjct: 553 GAVRLFKELQLKGISPDEITYGTLI 577



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 22/350 (6%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G +++A Q   +L+   F +  +G  CLID + +        G+Y  +L+   SP V +
Sbjct: 290 VGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVL 349

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           + +++    + G+I+DA    D   K+G       +NT++   C   +L+    L+S M 
Sbjct: 350 YTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEML 409

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            + +  D  T + +I GLCK   +D+A  +  EM E G  P  + +  LIDG  + GR++
Sbjct: 410 QNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 252 MAGDMKEARKIVDEMCTNGLNP--------------DKITYTILLDGFCKEGDLESALDI 297
                 EAR +  +M   G NP              D  +   L+   C+ G +  A  +
Sbjct: 470 ------EARMLFHKM-EMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKL 522

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            + +I  G+  D V +  LI+G C+   +  A R+ +E+   G+ PD+ TY  +ID   +
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLR 582

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTM 406
                    L + +   G  P++  YN++M  LC+  +L  A N+ LD +
Sbjct: 583 AHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYL 632



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 55/298 (18%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYV 131
           G +D+A+Q F  + +H           LID   R   L    + F+   ++ G +PS+++
Sbjct: 431 GLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFH--KMEMGNNPSLFL 488

Query: 132 --------------FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
                            L+H +C+ G++  A  +       G+    V++NTLING CKA
Sbjct: 489 RLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKA 548

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +NLD   RL   ++  G+ PD  TY  LI+GL + +R +DA +L   + + G +P+  I+
Sbjct: 549 RNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIY 608

Query: 238 TTLIDGHCKNGRIDMAGDM----------------------------------KEARKIV 263
            +++   C+  ++  A ++                                  +E  KI 
Sbjct: 609 NSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKID 668

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            E  +   NP    YTI L G C+    + AL I   + + GI++       LI+  C
Sbjct: 669 QEYGSISSNP----YTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLC 722



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           LD A++ F+ L+             LID ++R +     +  +  IL  G SPS+ ++N 
Sbjct: 551 LDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNS 610

Query: 135 LMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKN--LDEGFR--LKSV 189
           +M  LC+  K+  A  +  D   K+  +   V    L N H + ++  LD+G R  +K  
Sbjct: 611 MMRSLCRMKKLSQAINLWLDYLPKK--YNFPVESEVLANAHKEIEDGSLDDGVRELIKID 668

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
            E   +  + YT   +  GLC+  R DDA  + H + E G+         LI+  C +  
Sbjct: 669 QEYGSISSNPYTIWLI--GLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRN 726

Query: 250 IDMAGDM 256
           ++ A D+
Sbjct: 727 LNAAVDI 733


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 167/321 (52%), Gaps = 9/321 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             L+H  C+ G + +AQ VFD   + GL    V+F  LI+G+      ++G  L   M  
Sbjct: 42  TALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRI 101

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ P++YTY+ L+   C+    + A LL  EM  +G+T N V + TLI G C+  +   
Sbjct: 102 GGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRK--- 158

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              MK+A ++++ M   G+ P  +T+ +L+DG+ K G + +AL    +M   G +   V 
Sbjct: 159 ---MKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVT 215

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           + ALI+GFCR   ++ A R   +M + GL P   TYT++ID F +  D    F +   M 
Sbjct: 216 YNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGME 275

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G    V TY  L++ LC  G +K+A  L  ++ + G+   ++ Y++L+ G+ + G+  
Sbjct: 276 KAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSY 335

Query: 433 DFDKLQSE---KGLVSDYACY 450
              KL  E   KG V + A Y
Sbjct: 336 KAMKLIMEMRKKGFVPNSASY 356



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 166/310 (53%), Gaps = 6/310 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++Y +N+L+ + C+ G+ + A+++F+E   +G+    VS+NTLI G C+ + + + 
Sbjct: 103 GIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDA 162

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L  +M   G+RP V T++ L++G  K  ++ +A    ++M   G  P+ V +  LI G
Sbjct: 163 TQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAG 222

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+      A DM  A +   +M   GL P K+TYTIL+D F +E D++ A ++   M K
Sbjct: 223 FCR------ARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEK 276

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+E+D   +  L+   C  G + +A ++ + + + GL+  +  Y M+I  + + G +  
Sbjct: 277 AGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYK 336

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L+ EMR  G +P   +Y   +  LC  G+   A  L+D M+  GV   +    +LL 
Sbjct: 337 AMKLIMEMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVRAGVQTSESVRQVLLN 396

Query: 424 GHCKHGNPED 433
              + G+P D
Sbjct: 397 AKARQGSPTD 406



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 135/263 (51%), Gaps = 15/263 (5%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           DV   +AL++G C+   + +A+ +   M   GLTPN+V FT LI G+  +GR       +
Sbjct: 37  DVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGR------RE 90

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +   + ++M   G+ P+  TY IL+  +C+ G+ E A  + +EM  +GI  + V++  LI
Sbjct: 91  KGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLI 150

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           +G CR  K+ +A ++L  M + G++P   T+ +++D + K G          +MR  G+ 
Sbjct: 151 AGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQ 210

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P+  TYNAL+ G C+   +  AN     M + G+ P  +TY IL++   +     D DK 
Sbjct: 211 PSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARE---NDMDKA 267

Query: 438 ------QSEKGLVSDYACYTSLV 454
                   + GL  D   Y  LV
Sbjct: 268 FEMFAGMEKAGLEVDVRTYGVLV 290



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 29/279 (10%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G + +V  +N L+  LC+  K+KDA  + +   + G+  + V+FN L++G+ 
Sbjct: 130 LFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYG 189

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA  +       + M  +G +P   TY+ALI G C+   +  A     +M ERGL P  V
Sbjct: 190 KAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKV 249

Query: 236 IFTTLIDGHCKNGRID-----------------------------MAGDMKEARKIVDEM 266
            +T LID   +   +D                             M G+MK+ARK+   +
Sbjct: 250 TYTILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSI 309

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL    + Y +L+ G+ +EG    A+ +  EM K+G   ++ ++   I   C  GK 
Sbjct: 310 GEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKGFVPNSASYGLTIRILCNDGKC 369

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
            EAE ++ +M++ G++  ++   ++++   + G     F
Sbjct: 370 SEAEALIDDMVRAGVQTSESVRQVLLNAKARQGSPTDDF 408



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 6/250 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           + DA Q   L+R+   R        L+D   +    +  L F  ++   GY PS   +N 
Sbjct: 159 MKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNA 218

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   C+   +  A   F +  +RGL  T V++  LI+   +  ++D+ F + + ME +G
Sbjct: 219 LIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAG 278

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +  DV TY  L++ LC E  + DA  L   + E+GL   +VI+  LI G+ +       G
Sbjct: 279 LEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGRE------G 332

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +A K++ EM   G  P+  +Y + +   C +G    A  +  +M++ G++       
Sbjct: 333 SSYKAMKLIMEMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVRAGVQTSESVRQ 392

Query: 315 ALISGFCRGG 324
            L++   R G
Sbjct: 393 VLLNAKARQG 402



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 4/217 (1%)

Query: 249 RIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           R+  AG+++ A  ++      G    D    T L+ G+C+ GD+  A  +   M + G+ 
Sbjct: 11  RLSAAGEVRSALALLARGAKAGDTTLDVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLT 70

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V FTALI G+   G+  +   +  +M   G++P+  TY +++  +C+ G+ +    L
Sbjct: 71  PNEVTFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLL 130

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            +EM + G    V +YN L+ GLC++ ++K+A  LL+ M   G+ P  +T+N+L++G+ K
Sbjct: 131 FEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGK 190

Query: 428 HG---NPEDFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
            G   N   F       G       Y +L++   + R
Sbjct: 191 AGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRAR 227


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 175/363 (48%), Gaps = 32/363 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P V  +  LM+ LCK G    A  +     ++      +++NT+I+  CK + + E 
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 309

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L S M   G+ PD++TY++LI+ LC          LL+EM    + PN V+F+T++D 
Sbjct: 310 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 369

Query: 244 HCKNGRIDMAGD-----------------------------MKEARKIVDEMCTNGLNPD 274
            CK G I +A D                             M EA K+ D M   G  P+
Sbjct: 370 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 429

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             +Y IL++G+C+   ++ A+ + ++M  +G+  D V +  LI G C  G++  A  +  
Sbjct: 430 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 489

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM+  G  PD  TY +++D  CKN        LLK +        +  YN  ++G+C+ G
Sbjct: 490 EMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAG 549

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYT 451
           +L+ A  L   +   G+ PD  TYNI++ G CK G  ++ +KL     E G   D   Y 
Sbjct: 550 ELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYN 609

Query: 452 SLV 454
           +++
Sbjct: 610 TII 612



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 178/384 (46%), Gaps = 11/384 (2%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LDDA+  F R+L  H         + L       +  TV L    ++  +G  P VY  N
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTV-LSLSTQMDSFGIPPDVYTLN 189

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++  C   ++  A  V  +  K G      +FNTLI G C    + E   L     G 
Sbjct: 190 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 249

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G +PDV TY  L+NGLCK      A  LL  M ++   PN + + T+ID  CK+ ++   
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQV--- 306

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA  +  EM T G++PD  TY  L+   C   + +    +  EM+   I  + V F
Sbjct: 307 ---TEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 363

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           + ++   C+ G +  A  ++  M+K G++PD  TYT ++D  C   +     ++   M  
Sbjct: 364 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 423

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P V +YN L+NG C+  ++  A  LL+ M   G++ D +TYN L+ G C  G  + 
Sbjct: 424 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 483

Query: 434 FDKLQSE---KGLVSDYACYTSLV 454
              L  E    G + D   Y  L+
Sbjct: 484 AIALFHEMVASGQIPDLVTYRILL 507



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 151/297 (50%), Gaps = 11/297 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V F  L+    K K+      L + M+  G+ PDVYT + LIN  C   RL  A  +L
Sbjct: 149 STVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVL 208

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            ++ + G  P++  F TLI G C  G+I       EA  + D+    G  PD +TY  L+
Sbjct: 209 AKLLKLGCQPDNTTFNTLIRGLCVEGKIG------EALHLFDKTIGEGFQPDVVTYGTLM 262

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G CK G+  +A+ + + M+++    + +A+  +I   C+  +V EA  +  EM+  G+ 
Sbjct: 263 NGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGIS 322

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  TY  +I   C   + K    LL EM +   +P V  ++ +++ LCK G +  A+ +
Sbjct: 323 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 382

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           +D M+  GV PD +TY  L++GHC     ++    FD +   KG V +   Y  L++
Sbjct: 383 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM-VHKGCVPNVRSYNILIN 438



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 29/305 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++    P+V VF+ ++  LCKEG I  A  V D   KRG+    V++  L++GHC   
Sbjct: 350 EMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRS 409

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++   M   G  P+V +Y+ LING C+  R+D A  LL +M  +GL  + V + 
Sbjct: 410 EMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYN 469

Query: 239 TLIDGHCKNGRIDMA-------------GDMKEARKIVDEMCTN---------------- 269
           TLI G C  GR+  A              D+   R ++D +C N                
Sbjct: 470 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS 529

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            L+ D + Y I +DG C+ G+LE+A D+   +  +G++ D   +  +I G C+ G + EA
Sbjct: 530 NLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEA 589

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++ R+M + G   D   Y  +I  F ++ +T    +LL+EM ++G    V T   ++  
Sbjct: 590 NKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEM 649

Query: 390 LCKHG 394
           L   G
Sbjct: 650 LSDDG 654



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 128/283 (45%), Gaps = 9/283 (3%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-A 94
           K+GM + A     ++  RG     +   ALM  +     +D+A++ F  +  H   +P  
Sbjct: 372 KEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM-VHKGCVPNV 430

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           R    LI+   +       +G   ++   G       +N L+H LC  G+++ A  +F E
Sbjct: 431 RSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHE 490

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
               G     V++  L++  CK  +L E   L   +EGS +  D+  Y+  I+G+C+   
Sbjct: 491 MVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGE 550

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           L+ A  L   +  +GL P+   +  +I G CK G +D      EA K+  +M  NG + D
Sbjct: 551 LEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLD------EANKLFRKMDENGCSRD 604

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
              Y  ++ GF +  +   A  + +EM+  G   D V+ T LI
Sbjct: 605 GCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSAD-VSTTTLI 646


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 165/300 (55%), Gaps = 7/300 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V N L++ L K  +++DA  +F+E  +        +FN LI G C     ++   L   M
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGM 232

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM-CERGLTPNDVIFTTLIDGHCKNGR 249
            G G  PD+ TY+ LI G CK N L  A  +  ++    G +P+ V +T++I G+CK   
Sbjct: 233 SGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCK--- 289

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
              AG M+EA  ++D+M   G+ P  +T+ +L+DG+ K G++ +A +IR +MI  G   D
Sbjct: 290 ---AGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPD 346

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V FT+LI G+CR G+V +  R+  EM   G+ P+  TY+++I+  CK         LL 
Sbjct: 347 VVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLG 406

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           ++ S   +P    YN +++G CK G++  A ++++ M      PD IT+ IL+ GHC  G
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKG 466



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 211/455 (46%), Gaps = 22/455 (4%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           PH       +S    F +  +      +LL   + K GM   A      +++ G      
Sbjct: 83  PHIGFRFWEFS---RFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSR 139

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT--NLPTV--TLGF 116
           +L  L+  + + G L  A     LL + Y      GC  +++ ++ T   L  V   +  
Sbjct: 140 LLGFLVSSFAEKGKLHCATA---LLLQSY---EVEGCCMVVNSLLNTLVKLDRVEDAMKL 193

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E L +        FN+L+  LC  GK + A  +       G     V++NTLI G CK
Sbjct: 194 FEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCK 253

Query: 177 AKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +  L +   +   V   SG  PDV TY+++I+G CK  ++ +A +LL +M   G+ P +V
Sbjct: 254 SNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNV 313

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F  L+DG+ K      AG+M  A +I  +M + G  PD +T+T L+DG+C+ G +    
Sbjct: 314 TFNVLVDGYAK------AGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGF 367

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + +EM  RG+  +   ++ LI+  C+  ++++A  +L ++    + P    Y  VID F
Sbjct: 368 RLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGF 427

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G       +++EM      P   T+  L+ G C  G++  A  +   M+ +G  PD 
Sbjct: 428 CKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK 487

Query: 416 ITYNILLEGHCKHGNPEDFDKLQ--SEKGLVSDYA 448
           IT + LL    K G  ++   L   + KG ++D A
Sbjct: 488 ITVSSLLSCLLKAGMAKEAYHLNQIAHKGQINDGA 522



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 12/265 (4%)

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +R   +TY+ L   LCK    D A  +   M   G++PN  +   L+    + G++  A 
Sbjct: 99  IRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCAT 158

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            +      V+  C        +    LL+   K   +E A+ + +E ++     D   F 
Sbjct: 159 ALLLQSYEVEGCC--------MVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFN 210

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR-S 373
            LI G C  GK  +A  +L  M   G  PD  TY  +I  FCK+ + K    +  +++ S
Sbjct: 211 ILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSS 270

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P V TY ++++G CK G+++ A++LLD ML LG+ P ++T+N+L++G+ K G    
Sbjct: 271 SGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHT 330

Query: 434 FDKLQSEKGLVSDYACYTSLVSKSS 458
            +++   +G +  + C+  +V+ +S
Sbjct: 331 AEEI---RGKMISFGCFPDVVTFTS 352


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 171/326 (52%), Gaps = 12/326 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P V  +  LM+ LCK G    A  +     ++      +++NT+I+  CK + + E 
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 271

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L S M   G+ PD++TY++LI+ LC          LL+EM    + PN V+F+T++D 
Sbjct: 272 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 331

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK G I +A D      +VD M   G+ PD +TYT L+DG C   +++ A+ +   M+ 
Sbjct: 332 LCKEGMIAIAHD------VVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 385

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G   +  ++  LI+G+C+  ++ +A  +L +M   GL  D  TY  +I   C  G  + 
Sbjct: 386 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 445

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  EM + G +P + TY  L++ LCK+  L  A +LL  +    +  D + YNI ++
Sbjct: 446 AIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAID 505

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYAC 449
           G C+ G      +L++ + L S+ +C
Sbjct: 506 GMCRAG------ELEAARDLFSNLSC 525



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 6/310 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G  P    FN L+  LC EGKI +A  +FD+    G     V++ TL+NG CK  
Sbjct: 172 KLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVG 231

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N     RL   M     RP+V  Y+ +I+ LCK+ ++ +A  L  EM  +G++P+   + 
Sbjct: 232 NTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYN 291

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LI   C         + K    +++EM  + + P+ + ++ ++D  CKEG +  A D+ 
Sbjct: 292 SLIHALCN------LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVV 345

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             MIKRG+E D V +TAL+ G C   ++ EA ++   M+  G  P+  +Y ++I+ +C+ 
Sbjct: 346 DMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQI 405

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   LL++M   G +    TYN L++GLC  G+L++A  L   M+  G +PD +TY
Sbjct: 406 QRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTY 465

Query: 419 NILLEGHCKH 428
            ILL+  CK+
Sbjct: 466 RILLDYLCKN 475



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 178/384 (46%), Gaps = 11/384 (2%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LDDA+  F R+L  H         + L       +  TV L    ++  +G  P VY  N
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTV-LSLSTQMDSFGIPPDVYTLN 151

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L++  C   ++  A  V  +  K G      +FNTLI G C    + E   L     G 
Sbjct: 152 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 211

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G +PDV TY  L+NGLCK      A  LL  M ++   PN + + T+ID  CK+ ++   
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQV--- 268

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA  +  EM T G++PD  TY  L+   C   + +    +  EM+   I  + V F
Sbjct: 269 ---TEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 325

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           + ++   C+ G +  A  ++  M+K G++PD  TYT ++D  C   +     ++   M  
Sbjct: 326 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 385

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G +P V +YN L+NG C+  ++  A  LL+ M   G++ D +TYN L+ G C  G  + 
Sbjct: 386 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 445

Query: 434 FDKLQSE---KGLVSDYACYTSLV 454
              L  E    G + D   Y  L+
Sbjct: 446 AIALFHEMVASGQIPDLVTYRILL 469



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 156/315 (49%), Gaps = 11/315 (3%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   F+         + V F  L+    K K+      L + M+  G+ PDVYT + 
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN  C   RL  A  +L ++ + G  P++  F TLI G C  G+I       EA  + D
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIG------EALHLFD 206

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +    G  PD +TY  L++G CK G+  +A+ + + M+++    + +A+  +I   C+  
Sbjct: 207 KTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDR 266

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +V EA  +  EM+  G+ PD  TY  +I   C   + K    LL EM +   +P V  ++
Sbjct: 267 QVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS 326

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSE 440
            +++ LCK G +  A+ ++D M+  GV PD +TY  L++GHC     ++    FD +   
Sbjct: 327 TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM-VH 385

Query: 441 KGLVSDYACYTSLVS 455
           KG V +   Y  L++
Sbjct: 386 KGCVPNVRSYNILIN 400



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 155/348 (44%), Gaps = 20/348 (5%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
           + LHL     G G     F   + T GT + GL           +G    AI+  R + +
Sbjct: 200 EALHLFDKTIGEG-----FQPDVVTYGTLMNGLC---------KVGNTSAAIRLLRSMVQ 245

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
              R        +ID + +    T     + E++  G SP ++ +N L+H LC   + K 
Sbjct: 246 KNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKH 305

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
              + +E     +    V F+T+++  CK   +     +  +M   G+ PDV TY+AL++
Sbjct: 306 VTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMD 365

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G C  + +D+A  +   M  +G  PN   +  LI+G+C+  R+D      +A  ++++M 
Sbjct: 366 GHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMD------KAMGLLEQMS 419

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             GL  D +TY  L+ G C  G L+ A+ +  EM+  G   D V +  L+   C+   + 
Sbjct: 420 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLA 479

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           EA  +L+ +    L  D   Y + ID  C+ G+ +    L   +   G
Sbjct: 480 EAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/505 (27%), Positives = 230/505 (45%), Gaps = 65/505 (12%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL--V 61
           RL L  +S +   L +  +H+ A  LL  + S     +  ++F ++ + R   LP     
Sbjct: 84  RLRLFLFSALSPRLRSRPLHAHAVSLLLRLSSH----ADEAMFDALADARAAGLPASSSA 139

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKH----------------------------YFRIP 93
             AL+  +   G   DA+Q F  + +                             Y R+ 
Sbjct: 140 FAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMV 199

Query: 94  ARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
           A GC         L+D + +  +    L  + E+LD G  P+V ++ VL+  LC  GKI 
Sbjct: 200 AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKID 259

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A  +      +G     V++N  ++G CK   ++E F+   +++  G    +  YS LI
Sbjct: 260 EAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLI 319

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +GL +  R D+       M ER ++P+ V++T +I G  + GRI+      +A   +D M
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIE------DALSFLDVM 373

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G  PD   Y  +L   C  GDLE A  +R EM++  + LD+   T +I G C+ G V
Sbjct: 374 KKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLV 433

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV------ 380
            EA ++  EM + G  P   TY  +ID F + G  +    L  +M   G+ P++      
Sbjct: 434 DEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM-GNNPSLFLRLTL 492

Query: 381 --------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
                   E+   L++ +C+ GQ+  A  LL +++D GVVPD +TYN L+ G CK  N +
Sbjct: 493 GANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  E   KG+  D   Y +L+
Sbjct: 553 GAVRLFKELQLKGISPDEITYGTLI 577



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 22/350 (6%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G +++A Q   +L+   F +  +G  CLID + +        G+Y  +L+   SP V +
Sbjct: 290 VGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVL 349

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           + +++    + G+I+DA    D   K+G       +NT++   C   +L+    L+S M 
Sbjct: 350 YTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEML 409

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            + +  D  T + +I GLCK   +D+A  +  EM E G  P  + +  LIDG  + GR++
Sbjct: 410 QNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 252 MAGDMKEARKIVDEMCTNGLNP--------------DKITYTILLDGFCKEGDLESALDI 297
                 EAR +  +M   G NP              D  +   L+   C+ G +  A  +
Sbjct: 470 ------EARMLFHKM-EMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKL 522

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            + +I  G+  D V +  LI+G C+   +  A R+ +E+   G+ PD+ TY  +ID   +
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLR 582

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-NMLLDTM 406
                    L + +   G  P++  YN++M  LC+  +L  A N+ LD +
Sbjct: 583 AHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYL 632



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 55/298 (18%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYV 131
           G +D+A+Q F  + +H           LID   R   L    + F+   ++ G +PS+++
Sbjct: 431 GLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFH--KMEMGNNPSLFL 488

Query: 132 --------------FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
                            L+H +C+ G++  A  +       G+    V++NTLING CKA
Sbjct: 489 RLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKA 548

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           +NLD   RL   ++  G+ PD  TY  LI+GL + +R +DA +L   + + G +P+  I+
Sbjct: 549 RNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIY 608

Query: 238 TTLIDGHCKNGRIDMAGDM----------------------------------KEARKIV 263
            +++   C+  ++  A ++                                  +E  KI 
Sbjct: 609 NSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKID 668

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            E      NP    YTI L G C+    + AL I   + + GI++       LI+  C
Sbjct: 669 QEYGYISSNP----YTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLC 722



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           LD A++ F+ L+             LID ++R +     +  +  IL  G SPS+ ++N 
Sbjct: 551 LDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNS 610

Query: 135 LMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKN--LDEGFR--LKSV 189
           +M  LC+  K+  A  +  D   K+  +   V    L N H + ++  LD+G R  +K  
Sbjct: 611 MMRSLCRMKKLSQAINLWLDYLPKK--YNFPVESEVLANAHKEIEDGSLDDGVRELIKID 668

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
            E   +  + YT   +  GLC+  R DDA  + H + E G+         LI+  C +  
Sbjct: 669 QEYGYISSNPYTIWLI--GLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRN 726

Query: 250 IDMAGDM 256
           ++ A D+
Sbjct: 727 LNAAVDI 733


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 194/398 (48%), Gaps = 11/398 (2%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V   L++V        DA++ F  +R       A  C  L+  + R  +       + E+
Sbjct: 116 VPSWLVLVLAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEM 175

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
              G + S +V+N ++H   K G    A+ +       G+     S+NT+I  +CK    
Sbjct: 176 ARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMR 235

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   ++  M+  G+R D  T+++LI+GLCK  R+ +A  L  EM     TP++V +TTL
Sbjct: 236 YEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTL 295

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           IDG+C+      AG+++EA K+  EM   G+ P   TY  +L   C++G ++    +  E
Sbjct: 296 IDGYCR------AGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNE 349

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M +R ++ D+V    LI+ +C+ G +  A ++ ++M++ GL+ +  TY  +I  FCK  +
Sbjct: 350 MDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKE 409

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                    +M   G  P    ++ L++G CK        ++ D ++  G+ PD   Y  
Sbjct: 410 LDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRS 469

Query: 421 LLEGHCKHG----NPEDFDKLQSEKGLVSDYACYTSLV 454
           L+   C+ G      + FD++QS KGLV D   Y +L 
Sbjct: 470 LIRRLCRKGLVDQAQKVFDQMQS-KGLVGDSLVYATLA 506



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 157/336 (46%), Gaps = 32/336 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G       +N L+H LCK G++K+A  +F E          V++ TLI+G+C+A N++E 
Sbjct: 249 GIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEA 308

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L+  ME +GM P V TY+A++  LC++ ++ +   LL+EM ER +  + V   TLI+ 
Sbjct: 309 VKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINA 368

Query: 244 HCKNGRIDMAGDMK-----------------------------EARKIVDEMCTNGLNPD 274
           +CK G +  A  +K                             EA++   +M   G +P+
Sbjct: 369 YCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPN 428

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
              ++ L+DGFCK+ + ++ L I  E++KRG+  D   + +LI   CR G V +A+++  
Sbjct: 429 YSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFD 488

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M   GL  D   Y  +   +   G        L  M  +      + YN L        
Sbjct: 489 QMQSKGLVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKNQLYITPQIYNCLCTSYADEK 548

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           +    N+L    ++ G++   + Y ++ +   +  N
Sbjct: 549 E--TLNILWVRAIERGLIKKSV-YKLMHQARLESTN 581


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 9/317 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY+   L+  LC+ G+  DA  V       G      ++NTL+ G+C+  +LD  
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL   M    + PD YTY+ LI  LC   R+ DA  LL +M  RG  PN V +T L++ 
Sbjct: 130 RRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN         ++A  ++DEM   G  P+ +TY ++++G C+EG ++ A D+   +  
Sbjct: 187 MCKN------SGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFS 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V++T L+ G C   +  + E +  EM++    P++ T+ M+I  FC+ G  + 
Sbjct: 241 YGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVER 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++L++M            N ++N +CK G++ +A   L+ M   G  PD I+Y  +L+
Sbjct: 301 AIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLK 360

Query: 424 GHCKHGNPEDFDKLQSE 440
           G C+     D  +L  E
Sbjct: 361 GLCRAERWNDAKELLKE 377



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 186/403 (46%), Gaps = 21/403 (5%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA---IQCFRLLRKHYFRI 92
           ++G  S A+      E  G+ +     + L+  Y   G LD A   I    +    Y   
Sbjct: 87  RRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYT 146

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
           P    R L DR    +     L    ++L  G  P+V  + VL+  +CK    + A  V 
Sbjct: 147 PL--IRVLCDRGRVAD----ALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVL 200

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
           DE   +G     V++N +ING C+   +D+   L + +   G +PD  +Y+ L+ GLC  
Sbjct: 201 DEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCAS 260

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            R DD E L  EM E+   PN+V F  LI   C+ G ++       A +++ +M  +   
Sbjct: 261 KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVE------RAIQVLQQMTEHECA 314

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            +     I+++  CK+G ++ A      M   G   D +++T ++ G CR  +  +A+ +
Sbjct: 315 TNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKEL 374

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L+EM++    P++ T+   I   C+ G  +    L+++M+  G    V TYNAL+NG C 
Sbjct: 375 LKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCV 434

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
            G + +A   L+    +   P+ ITY  LL G C   N E  D
Sbjct: 435 QGHIDSA---LELFRSMPCKPNTITYTTLLTGLC---NAERLD 471



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 164/330 (49%), Gaps = 6/330 (1%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P  Y +  L+  LC  G++ DA  + D+  +RG     V++  L+   CK    ++   
Sbjct: 139 APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMA 198

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G  P++ TY+ +ING+C+E R+DDA  LL+ +   G  P+ V +TTL+ G C
Sbjct: 199 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLC 258

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            + R D      +  ++  EM      P+++T+ +L+  FC+ G +E A+ + ++M +  
Sbjct: 259 ASKRWD------DVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE 312

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              +      +I+  C+ G+V +A + L  M   G  PD  +YT V+   C+        
Sbjct: 313 CATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAK 372

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LLKEM  +   P   T+N  +  LC+ G ++ A ML++ M + G     +TYN L+ G 
Sbjct: 373 ELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGF 432

Query: 426 CKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           C  G+ +   +L        +   YT+L++
Sbjct: 433 CVQGHIDSALELFRSMPCKPNTITYTTLLT 462



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 25/317 (7%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  M+R N P                P+   FN  +  LC++G I+ A M+ ++  + G
Sbjct: 374 LLKEMVRNNCP----------------PNEVTFNTFICILCQKGLIEQAIMLIEQMQEHG 417

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++N L+NG C   ++D    L   M     +P+  TY+ L+ GLC   RLD A 
Sbjct: 418 CTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDAAA 474

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ EM  R   PN V F  L++  C+ G +D      EA ++V++M  +G  P+ ITY 
Sbjct: 475 ELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLD------EAIELVEQMMEHGCTPNLITYN 528

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L DG  K+   E AL++   ++ +G+  D + F+++I    +  +V EA +M      +
Sbjct: 529 TLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDI 588

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P    Y  ++   CK  +       L  M S+G +P   TY  L+ GL + G LK A
Sbjct: 589 GMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEA 648

Query: 400 NMLLDTMLDLGVVPDDI 416
             LL  +   GVV  ++
Sbjct: 649 QDLLSMLCSRGVVSKNL 665



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 15/421 (3%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRK 87
           LL  + + K       LFA ++E     +P  V  D L+  +   G ++ AIQ  + + +
Sbjct: 253 LLKGLCASKRWDDVEELFAEMMEKNC--MPNEVTFDMLIRFFCRGGMVERAIQVLQQMTE 310

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           H        C  +I+ + +         F   +  YG +P    +  ++  LC+  +  D
Sbjct: 311 HECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWND 370

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A+ +  E  +       V+FNT I   C+   +++   L   M+  G    V TY+AL+N
Sbjct: 371 AKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVN 430

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           G C +  +D A  L   M      PN + +TTL+ G C   R+D A ++      V EM 
Sbjct: 431 GFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAEL------VAEML 481

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
                P+ +T+ +L++ FC++G L+ A+++ ++M++ G   + + +  L  G  +     
Sbjct: 482 HRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSE 541

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A  +L  ++  G+ PD  T++ +I    K    +   ++    +  G  P    YN ++
Sbjct: 542 DALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKIL 601

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLV 444
            GLCK  ++ NA   L  M+  G +P++ TY IL+EG  + G     +D   +   +G+V
Sbjct: 602 LGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGVV 661

Query: 445 S 445
           S
Sbjct: 662 S 662



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 35/225 (15%)

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            R D+AG    AR +      +G  PD    T L+   C+ G    A  + +     G  
Sbjct: 51  AREDLAG---AARLVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSP 107

Query: 308 LDNVAFTALISGFCR--------------------------------GGKVVEAERMLRE 335
           +D  A+  L++G+CR                                 G+V +A  +L +
Sbjct: 108 VDVFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDD 167

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML+ G +P+  TYT++++  CKN   +    +L EMR+ G  P + TYN ++NG+C+ G+
Sbjct: 168 MLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR 227

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           + +A  LL+ +   G  PD ++Y  LL+G C     +D ++L +E
Sbjct: 228 VDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAE 272



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL  + + + + ++A L A +L  R      +  + L+  +   GFLD+AI+    + +H
Sbjct: 460 LLTGLCNAERLDAAAELVAEMLH-RDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEH 518

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                      L D + +       L     ++  G SP V  F+ ++  L KE ++++A
Sbjct: 519 GCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEA 578

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +F      G+   A+ +N ++ G CK   +D      + M  +G  P+  TY  LI G
Sbjct: 579 IQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEG 638

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVI 236
           L +E  L +A+ LL  +C RG+   ++I
Sbjct: 639 LAREGLLKEAQDLLSMLCSRGVVSKNLI 666



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%)

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           DG  P V     L+  LC+ G+  +A  +L      G   D   YN L+ G+C++G+ + 
Sbjct: 69  DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 128

Query: 434 FDKLQSEKGLVSDYACYTSLV 454
             +L     +  D   YT L+
Sbjct: 129 ARRLIGSMPVAPDAYTYTPLI 149


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 168/325 (51%), Gaps = 9/325 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V     L++  CK G + +A+ VFDE    GL    V++  L++G+      ++GF L  
Sbjct: 38  VTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFE 97

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ P++YTY+ LI   C+    + A  L  EM  RG+  N V + TLI G C++G
Sbjct: 98  EMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHG 157

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       +A K++D M T G  P  IT+ +L+DG+ K G + +AL    +M   G + 
Sbjct: 158 KL------WDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V +  LI+GFCR   +  A R L +M + GL+P   TYT++ID F +       F +L
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G      TY  L+  LC  G +K+A  L  +M + GV P ++ Y++++ G+ + 
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE 331

Query: 429 GNPEDFDKL---QSEKGLVSDYACY 450
           G+     KL     +KGL+ + A Y
Sbjct: 332 GSSYKALKLIMEMRQKGLIPNSASY 356



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 156/294 (53%), Gaps = 8/294 (2%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  E+   G  P++Y +N L+ + C+ G+ + A+ +FDE   RG+    VS+NTLI 
Sbjct: 92  GFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   L +  +L  +M   G RP + T++ L++G  K  ++ +A    ++M   G  P
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +  LI G C+      A DM  A + + +M   GL P K+TYTIL+D F +E  + 
Sbjct: 212 SAVTYNMLIAGFCR------ARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMG 265

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A +I   M K G+E+D   +  L+   C  G + +A ++ + M + G++P +  Y M+I
Sbjct: 266 KAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMI 325

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             + + G +    +L+ EMR  G +P   +Y   +  LCK  + + A  LLD M
Sbjct: 326 YGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDM 379



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 7/341 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+   +  LMH     G+ +    +F+E  + G+     ++N LI   C+    +  
Sbjct: 68  GLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERA 127

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G+  +V +Y+ LI GLC+  +L DA  LL  M   G  P+ + F  L+DG
Sbjct: 128 RSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDG 187

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K      AG M  A    ++M   G  P  +TY +L+ GFC+  D+  A     +M +
Sbjct: 188 YGK------AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE 241

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+E   V +T LI  F R   + +A  +L  M K GL+ D  TY +++   C  G+ K 
Sbjct: 242 RGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKD 301

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L + M   G  P+   Y+ ++ G  + G    A  L+  M   G++P+  +Y + + 
Sbjct: 302 ARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIR 361

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYAC-YTSLVSKSSKYRQK 463
             CK    ++ + L  +   +  +A  + + ++  S  +QK
Sbjct: 362 VLCKDDKCQEAEALLDDMETIRSFAGHHQNFIASKSDSQQK 402



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           DV   +AL+NG CK   + +A  +  EM   GL PN+V +T L+ G+  +G+       +
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQ------RE 90

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +   + +EM   G+ P+  TY  L+  +C+ G+ E A  +  EM  RGI  + V++  LI
Sbjct: 91  KGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           +G CR GK+ +A ++L  M   G +P   T+ +++D + K G          +M++ G  
Sbjct: 151 AGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQ 210

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           P+  TYN L+ G C+   +  AN  L  M + G+ P  +TY IL++   + 
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 285 FCKEGDLESALDIRKEMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            C  GD+ SAL +     K G   LD  A TAL++G C+GG V EA R+  EM  +GL P
Sbjct: 12  LCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAP 71

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           ++ TYT ++  +  +G  + GF L +EMR  G  P + TYN L+   C+ G+ + A  L 
Sbjct: 72  NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           D M   G+V + ++YN L+ G C+HG   D  KL
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKL 165



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L DA +   ++R    R        L+D   +    +  L F+ ++   G+ PS   +
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+L+   C+   +  A     +  +RGL  T V++  LI+   +  ++ + F + + ME 
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEK 276

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G+  D +TY  L+  LC E  + DA  L   M E+G+ P++VI+  +I G+ +      
Sbjct: 277 AGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE----- 331

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
            G   +A K++ EM   GL P+  +Y + +   CK+   + A
Sbjct: 332 -GSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEA 372



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 4/217 (1%)

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITY-TILLDGFCKEGDLESALDIRKEMIKRGIE 307
           R+  AGD++ A  ++     +G     +T  T L++G CK GD+  A  +  EM   G+ 
Sbjct: 11  RLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLA 70

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V +TAL+ G+   G+  +   +  EM + G++P+  TY  +I  +C+ G+ +    L
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM   G +  V +YN L+ GLC+HG+L +A  LLD M   G  P  IT+N+L++G+ K
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGK 190

Query: 428 HG---NPEDFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
            G   N   F       G       Y  L++   + R
Sbjct: 191 AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRAR 227


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 189/345 (54%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++    +P++  FN L+  LC+ G  +    V  +  + G       + T+I+G CK  
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    + + M   G++P+V  Y+ ++ GLC   R  +AE LL EM ++    +DV F 
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M ++G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 361 ILVDFFCQNGLVD------RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLL 414

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G + + V++T ++ G C  G+ V+AE ++ +M++ G  P+  T+  +I+  CK 
Sbjct: 415 KSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKK 474

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+ + A  LL+ M++ G+ P+ I Y
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534

Query: 419 NILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     + G      + FD ++ +  + SD   Y +++S   K
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIK-DTTIRSDAVLYNAVISSLCK 578



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 10/327 (3%)

Query: 118 LEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE+LD     G +P   +++V++   C+ G  +++  V +    +G      + N ++N 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+   +DE   L   +   G   D+ +Y+A++ GLC   R  D E L+ EM      PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F TLI   C+NG  +         +++ +M  +G  PD   Y  ++DG CKEG LE 
Sbjct: 251 IVTFNTLIGYLCRNGLFE------RVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A +I   M   G++ + V +  ++ G C   +  EAE +L EM +     DD T+ +++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            FC+NG       LL++M S G +P V TY  ++NG CK G +  A MLL +M   G  P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE 440
           + ++Y I+L+G C  G   D ++L S+
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQ 451



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 178/350 (50%), Gaps = 9/350 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   ++  +G    +  +N ++  LC   +  D + + DE  +       V+FNTLI 
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIG 259

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C+    +    + + M   G  PD+  Y+ +I+G+CKE  L+ A  +L+ M   GL P
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + T++ G C   R       KEA +++ EM       D +T+ IL+D FC+ G ++
Sbjct: 320 NVVCYNTVLKGLCSAER------WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             +++ ++M+  G   D + +T +I+GFC+ G + EA  +L+ M   G KP+  +YT+V+
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              C  G       L+ +M   G  P   T+N L+N LCK G ++ A  LL  ML  G  
Sbjct: 434 KGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           PD I+Y+ +++G  K G  E+  +L +    KG+  +   Y+S+    S+
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 9/325 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N++++ +C++G + +A  +  +    G  A  VS+N ++ G C AK   +   L   M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P++ T++ LI  LC+    +    +L +M E G TP+  ++ T+IDG CK G +++
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A +      I++ M + GL P+ + Y  +L G C     + A ++  EM ++   LD+V 
Sbjct: 305 ANE------ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+  FC+ G V     +L +ML  G  PD  TYT VI+ FCK G       LLK M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G  P   +Y  ++ GLC  G+  +A  L+  M+  G  P+ +T+N L+   CK G  E
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  +    G   D   Y++++
Sbjct: 479 QAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 160/319 (50%), Gaps = 6/319 (1%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG  P+V  +N ++  LC   + K+A+ +  E  ++      V+FN L++  C+   +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M   G  PDV TY+ +ING CKE  +D+A +LL  M   G  PN V +T ++
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C  GR        +A +++ +M   G  P+ +T+  L++  CK+G +E A+++ K+M
Sbjct: 434 KGLCSAGR------WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G   D ++++ +I G  + GK  EA  +L  M+  G+ P+   Y+ +     + G  
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               ++   ++          YNA+++ LCK  +   A      M+  G +P++ TY +L
Sbjct: 548 NKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607

Query: 422 LEGHCKHGNPEDFDKLQSE 440
           ++G    G  ++  +L SE
Sbjct: 608 IKGLASEGLAKEAQELLSE 626



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++    G     +++ T+ING CK   +DE   L   M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC   R  DAE L+ +M ++G  PN V F TLI+  CK G ++
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  E AL++   M+ +GI  + +
Sbjct: 479 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++     R G+V +  +M   +    ++ D   Y  VI   CK  +T         M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S+G +P   TY  L+ GL   G  K A  LL  +   G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 6/278 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +  L    +    ++L +G  P V  +  +++  CKEG I +A M+       G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                VS+  ++ G C A    +   L S M   G  P+  T++ LIN LCK+  ++ A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   G +P+ + ++T+IDG      +  AG  +EA ++++ M   G++P+ I Y+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDG------LGKAGKTEEALELLNVMVNKGISPNTIIYS 535

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +     +EG +   + +   +    I  D V + A+IS  C+  +   A      M+  
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           G  P+++TYTM+I      G  K    LL E+ S G L
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 12/223 (5%)

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +  ++ G+C+ G++  A  +  A  +          P+  T+  ++ G C  G +  A
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAVPV---------PPNAYTFFPVVRGLCTRGRIADA 130

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L++  EM  +G       +  ++   CR G    + R+L  M   G   D     +V++ 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+ G       LL+++   G    + +YNA++ GLC   +  +   L+D M+ +   P+
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            +T+N L+   C++G  E   ++    SE G   D   Y +++
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 204/412 (49%), Gaps = 12/412 (2%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGS--SASLFASILETRGTHLPGLVLD 63
           TL  +S ++H L  H+     +  L   +S     +   A LF+  L    +    LV D
Sbjct: 102 TLDTHSILLHTLSKHRQFKTTQKFLTQTLSSHPPHTLFDALLFSYRLCNSSS---PLVFD 158

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           +L            A   + L+++H F    + C   +  ++R     + L FY EI   
Sbjct: 159 SLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREIRRR 218

Query: 124 G-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
              SP+VY  N+++   C  G+++    + ++    GL    VSFNTLI+G+C       
Sbjct: 219 SCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGL 278

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             ++KS+M  +G++P+V T++ LING CKE +L +A  + +EM    + P+ V + TL++
Sbjct: 279 ALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLN 338

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+   G++   GD +   ++ +EM  NGL  D +TY  L+ G CK+G  + A    +E+ 
Sbjct: 339 GY---GQV---GDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELD 392

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           K  +  +   F+ALI+G C       A  + R M++ G  P+  T+ M+I  FCKN D  
Sbjct: 393 KENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFD 452

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
              ++L++M      P + T + L +GLC+ G+ + A  L   M    ++PD
Sbjct: 453 GAVQVLRDMLGRLMSPDLSTMSELCDGLCRCGKNQLALALCSEMEVRRLLPD 504



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 163/328 (49%), Gaps = 26/328 (7%)

Query: 125 YSPSVYVFN---VLMHKLCKEGKIKDAQ-------------MVFDE--FGKRGLHATA-V 165
           ++PS +  +   +L+H L K  + K  Q              +FD   F  R  ++++ +
Sbjct: 96  HNPSSHTLDTHSILLHTLSKHRQFKTTQKFLTQTLSSHPPHTLFDALLFSYRLCNSSSPL 155

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
            F++L               + ++M+  G  P V + +A ++ L +  R D A     E+
Sbjct: 156 VFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREI 215

Query: 226 CERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
             R  ++PN      +I  +C      M G++++   ++++M   GL+P+ +++  L+ G
Sbjct: 216 RRRSCVSPNVYTLNMIIRAYC------MLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISG 269

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           +C +G    AL ++  M++ G++ + V F  LI+GFC+  K+ EA R+  EM    + P 
Sbjct: 270 YCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPS 329

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY  +++ + + GD++ G R+ +EM  +G    + TYNAL+ GLCK G+ K A   + 
Sbjct: 330 VVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVR 389

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPE 432
            +    +VP+  T++ L+ G C   N E
Sbjct: 390 ELDKENLVPNASTFSALITGQCVRNNSE 417



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 215 LDDAELLLHEMCE-RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           LD   +LLH + + R         T  +  H  +   D       A      +C N  +P
Sbjct: 103 LDTHSILLHTLSKHRQFKTTQKFLTQTLSSHPPHTLFD-------ALLFSYRLC-NSSSP 154

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
             + +  L            A  I   M + G      +  A +S   R  +   A    
Sbjct: 155 --LVFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFY 212

Query: 334 REMLKVG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           RE+ +   + P+  T  M+I  +C  G+ + GF +L++M   G  P V ++N L++G C 
Sbjct: 213 REIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCN 272

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            G    A  +   M++ GV P+ +T+N L+ G CK     + +++ +E
Sbjct: 273 KGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNE 320


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 193/366 (52%), Gaps = 10/366 (2%)

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           +++V    G   DA+Q F  +  HY   P AR    L+      NL   +     +  ++
Sbjct: 150 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 209

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNLDE 182
           G     Y +N LM  L   G++ D   +F+ + +  +++  V SFN +I G C+   + +
Sbjct: 210 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQK 269

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLI 241
              L   M   G  PD  T++ L++GLC+ N +     +L  +   G+  PN V FT++I
Sbjct: 270 ALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 329

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G+CK      AG +++A  + ++M  +G+ P+ +TY +L++G+ K GDL SA+++ ++M
Sbjct: 330 SGYCK------AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 383

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            +     D V F++LI G+CR G++ +A R+  +M +  ++P+  T++++I   CK   +
Sbjct: 384 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRS 443

Query: 362 KTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                LL E+     + P    YN +++ LCK G++  AN++   M + G  PD  TY I
Sbjct: 444 DEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTI 503

Query: 421 LLEGHC 426
           L+ G+C
Sbjct: 504 LIIGYC 509



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 166/326 (50%), Gaps = 9/326 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL-DEGF 184
           +PS +    ++  LC+ G+  DA  +FD+      ++    F + +   C   NL D   
Sbjct: 141 TPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASA 200

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDG 243
            L S     G R + Y Y+ L++ L    R+ D   L     + R  +P+   F  +I G
Sbjct: 201 TLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKG 260

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+ G++      ++A ++V+ M   G +PD +T+ IL+DG C+  ++    ++ + + +
Sbjct: 261 VCRVGQV------QKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQR 314

Query: 304 RGIELDNVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            G+ + NV  FT++ISG+C+ GK+ +A  +  +M+  G+ P+  TY ++I+ + K GD  
Sbjct: 315 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 374

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +   + ++M      P V T+++L++G C+ GQL +A  +   M    + P+  T++I++
Sbjct: 375 SAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIII 434

Query: 423 EGHCKHGNPEDFDKLQSEKGLVSDYA 448
              CK    ++   L +E  L  D A
Sbjct: 435 HSLCKQNRSDEAIGLLNELNLRPDIA 460



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  F  ++   CK GK++DA  V+++    G+    V++N LING+ K  +L     +
Sbjct: 320 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 379

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M      PDV T+S+LI+G C+  +LDDA  +  +M +  + PN   F+ +I   CK
Sbjct: 380 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 439

Query: 247 NGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             R D      EA  +++E+     + P    Y  ++D  CK G ++ A  IRK M ++G
Sbjct: 440 QNRSD------EAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKG 493

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
              D   +T LI G+C   ++ EA     EM++ G  PD  T    I C  K G
Sbjct: 494 CRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 547



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  Y +++  G  P+   +NVL++   K G +  A  V+ +  +       V+F++LI+
Sbjct: 341 AMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLID 400

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LT 231
           G+C+   LD+  R+ S M    ++P+VYT+S +I+ LCK+NR D+A  LL+E+  R  + 
Sbjct: 401 GYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIA 460

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P   I+  +ID  CK G++D      EA  I   M   G  PDK TYTIL+ G+C +  +
Sbjct: 461 PQAFIYNPVIDVLCKCGKVD------EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRI 514

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             A+    EM++ G   D++     IS   + G   E + ++R
Sbjct: 515 SEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMR 557


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 177/341 (51%), Gaps = 27/341 (7%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G    V  FN L+   CK G++  A  + +   K GL +  VS+NTLING CK    D+ 
Sbjct: 142 GTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKA 201

Query: 184 FRL-KSVMEGSGMRPDVY--------------------TYSALINGLCKENRLDDAELLL 222
             L   + E  G++  V+                    TY+ +I+  CK++ L++A  L 
Sbjct: 202 KSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALY 261

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            EM   G  P+ V ++++++G CK+GR      + EA++++ EM   G++P+ + YT L+
Sbjct: 262 EEMIINGFLPDVVTYSSIVNGLCKDGR------LSEAQELLREMKKMGVDPNHVAYTTLI 315

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           D   K G    A   + +++ RG+ LD V  T L+ G  +  K  EAE M R + K+ L 
Sbjct: 316 DSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLI 375

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  TYT +ID +CK GD +    LL+EM      P V TY++++NG  K G L  A  +
Sbjct: 376 PNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINV 435

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL 443
           +  MLD  ++P+   Y IL++G+CK G  E    L +E  L
Sbjct: 436 MKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKL 476



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 187/361 (51%), Gaps = 10/361 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  L+D + +++ P      +  +      P+   +  L+   CK G ++  + +  E  
Sbjct: 346 CTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEME 405

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           ++ ++   ++++++ING+ K   LDE   +   M    + P+ Y Y+ LI+G CK  + +
Sbjct: 406 EKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQE 465

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L +EM   GL  N+V+F  L++   +  R+D      EA +++ ++ + GL  D +
Sbjct: 466 IATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMD------EAEELLKDVTSRGLLLDHV 519

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            YT L+DGF K G   +AL++ +EM ++ I  D V +  LI+G    GK  EA+ +   M
Sbjct: 520 NYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGK-YEAKSVYSGM 578

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +++GL P+ ATY ++I  +CK G+      L  EM+S   +P+  T N L+ GL + G++
Sbjct: 579 IEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEI 638

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
           + A  +L+ M  +G+ P+ + + +LL    K G      ++  +    GL  +   Y +L
Sbjct: 639 EKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNL 698

Query: 454 V 454
           +
Sbjct: 699 I 699



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 182/347 (52%), Gaps = 8/347 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
             Y E++  G+ P V  ++ +++ LCK+G++ +AQ +  E  K G+    V++ TLI+  
Sbjct: 259 ALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSL 318

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            KA +  E F  +S +   GM  D+   + L++GL K ++  +AE +   + +  L PN 
Sbjct: 319 FKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNS 378

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           + +T LIDG+CK       GDM+    ++ EM    +NP+ ITY+ +++G+ K+G L+ A
Sbjct: 379 ITYTALIDGYCK------VGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEA 432

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           +++ K+M+ + I  +   +  LI G+C+ GK   A  +  EM   GLK ++  + ++++ 
Sbjct: 433 INVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNN 492

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             +         LLK++ S G L     Y +LM+G  K G+   A  +++ M +  +  D
Sbjct: 493 LKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFD 552

Query: 415 DITYNILLEGHCKHGNPEDFDKLQS--EKGLVSDYACYTSLVSKSSK 459
            +TYN+L+ G  +HG  E         E GL  + A Y  ++    K
Sbjct: 553 VVTYNVLINGLLEHGKYEAKSVYSGMIEMGLAPNQATYNIMIKAYCK 599



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 189/384 (49%), Gaps = 32/384 (8%)

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           G   LID   +    ++ L     +   G    +  +N L++  CK G+   A+ +  E 
Sbjct: 149 GFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEI 208

Query: 156 GK-RG--------------------LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
            + RG                    L A  +++ T+I+ +CK   L+E   L   M  +G
Sbjct: 209 SESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIING 268

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
             PDV TYS+++NGLCK+ RL +A+ LL EM + G+ PN V +TTLID   K      AG
Sbjct: 269 FLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFK------AG 322

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA     ++   G+  D +  T L+DG  K    + A D+ + + K  +  +++ +T
Sbjct: 323 SAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYT 382

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI G+C+ G +   E +L+EM +  + P+  TY+ +I+ + K G       ++K+M   
Sbjct: 383 ALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQ 442

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG----N 430
             +P    Y  L++G CK G+ + A  L + M   G+  +++ +++L+  + K G     
Sbjct: 443 NIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLV-NNLKRGKRMDE 501

Query: 431 PEDFDKLQSEKGLVSDYACYTSLV 454
            E+  K  + +GL+ D+  YTSL+
Sbjct: 502 AEELLKDVTSRGLLLDHVNYTSLM 525



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 182/397 (45%), Gaps = 56/397 (14%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y E+L     P+VY  NVL+H  CK G +    +  D      +    V++NT+I G C
Sbjct: 32  IYTEMLCSAVPPNVYTHNVLVHAWCKMGNL---ILALDLLRNVDVEVDTVTYNTVIWGFC 88

Query: 176 KAKNLDEGFRLKSVME-----------------------------------GSGMRPDVY 200
           +   +++ F   S+M                                      G   DV 
Sbjct: 89  QHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVI 148

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG----DM 256
            ++ LI+G CK   +  A  L+  M + GL  + V + TLI+G CK G  D A     ++
Sbjct: 149 GFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEI 208

Query: 257 KEARKIVDEMCTN-----------GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            E+R + D +  N            L  D ITYT ++  +CK+  LE A  + +EMI  G
Sbjct: 209 SESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIING 268

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              D V ++++++G C+ G++ EA+ +LREM K+G+ P+   YT +ID   K G     F
Sbjct: 269 FLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAF 328

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
               ++   G    +     L++GL K  + K A  +   +  L ++P+ ITY  L++G+
Sbjct: 329 ACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGY 388

Query: 426 CKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           CK G+ E  + L     EK +  +   Y+S+++  +K
Sbjct: 389 CKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTK 425



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 158/309 (51%), Gaps = 7/309 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++LD    P+ YV+ +L+   CK GK + A  +++E    GL    V F+ L+N   + K
Sbjct: 438 KMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGK 497

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE   L   +   G+  D   Y++L++G  K  +   A  ++ EM E+ +  + V + 
Sbjct: 498 RMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYN 557

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G  ++G+        EA+ +   M   GL P++ TY I++  +CK+G+L++AL++ 
Sbjct: 558 VLINGLLEHGKY-------EAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELW 610

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM    I   ++    L+ G    G++ +A  +L EM  +G+ P+   + ++++   K+
Sbjct: 611 NEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKS 670

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      ++ +++   G     E YN L+   C+    K A  +L  M+  G V D +TY
Sbjct: 671 GKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTY 730

Query: 419 NILLEGHCK 427
           N L+ G+C+
Sbjct: 731 NALIRGYCE 739



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 166/366 (45%), Gaps = 30/366 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +    +  L    E+ +      V  +NVL++ L + GK  +A+ V+    + G
Sbjct: 524 LMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKY-EAKSVYSGMIEMG 582

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L     ++N +I  +CK   LD    L + M+   + P   T + L+ GL +   ++ A 
Sbjct: 583 LAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAM 642

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM----------------------- 256
            +L+EM   G+ PN VI   L++   K+G+ +    M                       
Sbjct: 643 NVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVF 702

Query: 257 ------KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
                 K+A  ++  M  +G   D +TY  L+ G+C+   ++ AL    +M+  G+  + 
Sbjct: 703 CRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNI 762

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +  L+ G    G + E + +  +M + GL PD +TY  +I  + K G+ K   RL  E
Sbjct: 763 VTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCE 822

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M + G +P   TYN L++   K G++  A  LL+ M   GV P   TY+IL+ G C    
Sbjct: 823 MVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSK 882

Query: 431 PEDFDK 436
             D D+
Sbjct: 883 HPDLDR 888



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 148/340 (43%), Gaps = 18/340 (5%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E+  +   PS    N L+  L + G+I+ A  V +E    G+H   V    L+N
Sbjct: 606 ALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLN 665

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
              K+   +   ++   +   G++ +   Y+ LI   C+      A  +L  M   G   
Sbjct: 666 ASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVA 725

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +  LI G+C++  +      K+A     +M   G++P+ +TY +LL G    G + 
Sbjct: 726 DTVTYNALIRGYCESSHV------KKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMA 779

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
              ++  +M + G+  D   +  LISG+ + G   E+ R+  EM+  G  P  +TY ++I
Sbjct: 780 ERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLI 839

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC---KHGQL---------KNAN 400
             F K G       LL EM+  G  P+  TY+ L+ G C   KH  L          +A 
Sbjct: 840 SDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAK 899

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            L+  M D G VP   T   +     + G   D +KL  E
Sbjct: 900 NLITEMNDKGFVPCKSTIACISSTFARPGKMLDAEKLLKE 939



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           R L++   ++      L  + +++D G   +   +N L+   C+    K A  V     +
Sbjct: 661 RVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIR 720

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
            G  A  V++N LI G+C++ ++ +     + M   G+ P++ TY+ L+ GL     + +
Sbjct: 721 DGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAE 780

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
            + L  +M E GL P+   + TLI G+   G+I   G+ KE+ ++  EM   G  P   T
Sbjct: 781 RDELFDKMKENGLNPDASTYDTLISGY---GKI---GNKKESIRLYCEMVAQGFVPKTST 834

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR--- 334
           Y +L+  F K G ++ A ++  EM  RG+   +  +  LI G+C   K  + +R L+   
Sbjct: 835 YNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIY 894

Query: 335 ---------EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
                    EM   G  P  +T   +   F + G      +LLKE+ S  +
Sbjct: 895 RTDAKNLITEMNDKGFVPCKSTIACISSTFARPGKMLDAEKLLKEIFSHAN 945



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 6/273 (2%)

Query: 35  SKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           SK G  ++       L   G  +     + L++V+  L     A    + + +  F    
Sbjct: 668 SKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADT 727

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                LI     ++     L  Y ++L+ G SP++  +N+L+  L   G + +   +FD+
Sbjct: 728 VTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDK 787

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             + GL+  A +++TLI+G+ K  N  E  RL   M   G  P   TY+ LI+   K  +
Sbjct: 788 MKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGK 847

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCK-NGRIDMAGDMK-----EARKIVDEMCT 268
           +D A  LL+EM  RG+ P+   +  LI G C  +   D+   +K     +A+ ++ EM  
Sbjct: 848 MDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAKNLITEMND 907

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G  P K T   +   F + G +  A  + KE+
Sbjct: 908 KGFVPCKSTIACISSTFARPGKMLDAEKLLKEI 940



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P  + +  L+  F   G +    DI  EM+   +  +      L+  +C+ G ++ A  +
Sbjct: 8   PTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILALDL 67

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           LR    V ++ D  TY  VI  FC++G     F  L  M          T N L+ G C+
Sbjct: 68  LR---NVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCR 124

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYAC 449
            G  K    ++D ++  G   D I +N L++G+CK G      D  +   ++GL+SD   
Sbjct: 125 IGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVS 184

Query: 450 YTSLVS 455
           Y +L++
Sbjct: 185 YNTLIN 190


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 182/376 (48%), Gaps = 9/376 (2%)

Query: 58  PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFY 117
           P L  + ++   V +     AI  FR L  +  +        L++    T   T      
Sbjct: 9   PILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSIL 68

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            +IL  GY P+   F  L+  +C  G+  +A +  D     G     VS+  L+NG CK 
Sbjct: 69  TKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCK- 127

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             + E      ++  + +  DV  YS +I+ LCK   + DA  L  EM  +G+ PN   F
Sbjct: 128 --MGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTF 185

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           + L+D  CK    D  G  K+A  ++  M   G+ P+ +TY  ++DG+C    +  AL+I
Sbjct: 186 SILVDALCK----DRKG--KQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNI 239

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              M++ G+E +   +  +I+G C+  +V EA  + +EM    + PD  TY ++ID  CK
Sbjct: 240 FNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCK 299

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G   T   L+ EMRS G    + TYN+L++ LCK+  L  A  L+  + D G+ P+  T
Sbjct: 300 LGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCT 359

Query: 418 YNILLEGHCKHGNPED 433
           Y  L++G CK G  ED
Sbjct: 360 YTTLIDGLCKDGRLED 375



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 170/309 (55%), Gaps = 6/309 (1%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V +++ ++  LCK   + DA  ++ E   +G+     +F+ L++  CK +   +   L +
Sbjct: 147 VVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLA 206

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           +M   G++P+V TY A+++G C  N+++ A  + + M + G+ PN   +  +I+G CK  
Sbjct: 207 MMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKK 266

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R+D      EA  +  EM    +NPD +TY IL+DG CK G + ++L++  EM   G  +
Sbjct: 267 RVD------EAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTV 320

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D + + +L+   C+   + +A  +++E+   G++P+  TYT +ID  CK+G  +  + + 
Sbjct: 321 DIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIF 380

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +E+ ++G+   V TYN ++NGLCK G    A  LL  M D   +PD ++Y  ++    + 
Sbjct: 381 QEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEK 440

Query: 429 GNPEDFDKL 437
           G     +KL
Sbjct: 441 GETVKTNKL 449



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 185/374 (49%), Gaps = 9/374 (2%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G    A LF   +   G  L  +    LM     +G    A+Q   +LRK +        
Sbjct: 94  GQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQ---MLRKTWVNADVVMY 150

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             +ID + +    T     Y E++  G  P+VY F++L+  LCK+ K K A  +     K
Sbjct: 151 STIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMK 210

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           +G+    V++  +++G+C    +++   + +VM   G+ P+V+ Y+ +INGLCK+ R+D+
Sbjct: 211 KGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDE 270

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  L  EM  + + P+ V +  LIDG CK G+I        + ++VDEM + G   D IT
Sbjct: 271 AMNLFKEMHWKKINPDVVTYNILIDGLCKLGKIS------TSLELVDEMRSIGKTVDIIT 324

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  LL   CK   L+ A+ + KE+  +GI+ +   +T LI G C+ G++ +A  + +E+L
Sbjct: 325 YNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEIL 384

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             G      TY ++I+  CK G       LL  M  +  +P   +Y  ++  L + G+  
Sbjct: 385 TEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETV 444

Query: 398 NANMLLDTMLDLGV 411
             N LL  M+  G+
Sbjct: 445 KTNKLLCAMIVRGL 458



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 169/364 (46%), Gaps = 29/364 (7%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L    +P +  FN ++  L K      A  +F +    G+  + V+   L+N +C    
Sbjct: 1   MLQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGG 60

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +   F + + +   G  P+  T++ LI G+C   +  +A L    +   G   + V +  
Sbjct: 61  ITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAI 120

Query: 240 LIDGHCKNGRIDMAGDM--------------------------KEARKIVDEMCTNGLNP 273
           L++G CK G    A  M                           +A ++  EM   G+ P
Sbjct: 121 LMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFP 180

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           +  T++IL+D  CK+   + A+++   M+K+G++ + V + A++ G+C   +V +A  + 
Sbjct: 181 NVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIF 240

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M++ G++P+   Y ++I+  CK         L KEM      P V TYN L++GLCK 
Sbjct: 241 NVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKL 300

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           G++  +  L+D M  +G   D ITYN LL   CK+ + +    L  E   +G+  +   Y
Sbjct: 301 GKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTY 360

Query: 451 TSLV 454
           T+L+
Sbjct: 361 TTLI 364



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EI D G  P+V  +  L+  LCK+G+++DA ++F E    G H T  ++N +ING CK  
Sbjct: 347 EIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKG 406

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             DE   L S ME +   PD  +Y  +I  L ++        LL  M  RGL+
Sbjct: 407 LFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLS 459



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%)

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  +++   +      A  + R++   G+KP   T T++++C+C  G     F +L ++ 
Sbjct: 13  FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKIL 72

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G+ P   T+  L+ G+C +GQ   A +  D ++  G   D ++Y IL+ G CK G   
Sbjct: 73  KMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETR 132

Query: 433 DFDKLQSEKGLVSDYACYTSLVSKSSK 459
              ++  +  + +D   Y++++    K
Sbjct: 133 AAMQMLRKTWVNADVVMYSTIIDSLCK 159


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 189/345 (54%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++    +P++  FN L+  LC+ G  +    V  +  + G       + T+I+G CK  
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    + + M   G++P+V  Y+ ++ GLC   R  +AE LL EM ++    +DV F 
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M ++G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 361 ILVDFFCQNGLVD------RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLL 414

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G + + V++T ++ G C  G+ V+AE ++ +M++ G  P+  T+  +I+  CK 
Sbjct: 415 KSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKK 474

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+ + A  LL+ M++ G+ P+ I Y
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534

Query: 419 NILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     + G      + FD ++ +  + SD   Y +++S   K
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIK-DTTIRSDAVLYNAVISSLCK 578



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 10/327 (3%)

Query: 118 LEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE+LD     G +P   +++V++   C+ G  +++  V +    +G      + N ++N 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+   +DE   L   +   G   D+ +Y+A++ GLC   R  D E L+ EM      PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F TLI   C+NG  +         +++ +M  +G  PD   Y  ++DG CKEG LE 
Sbjct: 251 IVTFNTLIGYLCRNGLFE------RVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A +I   M   G++ + V +  ++ G C   +  EAE +L EM +     DD T+ +++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            FC+NG       LL++M S G +P V TY  ++NG CK G +  A MLL +M   G  P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE 440
           + ++Y I+L+G C  G   D ++L S+
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQ 451



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 178/350 (50%), Gaps = 9/350 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   ++  +G    +  +N ++  LC   +  D + + DE  +       V+FNTLI 
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIG 259

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C+    +    + + M   G  PD+  Y+ +I+G+CKE  L+ A  +L+ M   GL P
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + T++ G C   R       KEA +++ EM       D +T+ IL+D FC+ G ++
Sbjct: 320 NVVCYNTVLKGLCSAER------WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             +++ ++M+  G   D + +T +I+GFC+ G + EA  +L+ M   G KP+  +YT+V+
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              C  G       L+ +M   G  P   T+N L+N LCK G ++ A  LL  ML  G  
Sbjct: 434 KGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           PD I+Y+ +++G  K G  E+  +L +    KG+  +   Y+S+    S+
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 9/325 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N++++ +C++G + +A  +  +    G  A  VS+N ++ G C AK   +   L   M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P++ T++ LI  LC+    +    +L +M E G TP+  ++ T+IDG CK G +++
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A +      I++ M + GL P+ + Y  +L G C     + A ++  EM ++   LD+V 
Sbjct: 305 ANE------ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+  FC+ G V     +L +ML  G  PD  TYT VI+ FCK G       LLK M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G  P   +Y  ++ GLC  G+  +A  L+  M+  G  P+ +T+N L+   CK G  E
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  +    G   D   Y++++
Sbjct: 479 QAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 160/319 (50%), Gaps = 6/319 (1%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG  P+V  +N ++  LC   + K+A+ +  E  ++      V+FN L++  C+   +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M   G  PDV TY+ +ING CKE  +D+A +LL  M   G  PN V +T ++
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C  GR        +A +++ +M   G  P+ +T+  L++  CK+G +E A+++ K+M
Sbjct: 434 KGLCSAGR------WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G   D ++++ +I G  + GK  EA  +L  M+  G+ P+   Y+ +     + G  
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               ++   ++          YNA+++ LCK  +   A      M+  G +P++ TY +L
Sbjct: 548 NKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607

Query: 422 LEGHCKHGNPEDFDKLQSE 440
           ++G    G  ++  +L SE
Sbjct: 608 IKGLASEGLAKEAQELLSE 626



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++    G     +++ T+ING CK   +DE   L   M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC   R  DAE L+ +M ++G  PN V F TLI+  CK G ++
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  E AL++   M+ +GI  + +
Sbjct: 479 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++     R G+V +  +M   +    ++ D   Y  VI   CK  +T         M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S+G +P   TY  L+ GL   G  K A  LL  +   G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 6/278 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +  L    +    ++L +G  P V  +  +++  CKEG I +A M+       G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                VS+  ++ G C A    +   L S M   G  P+  T++ LIN LCK+  ++ A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   G +P+ + ++T+IDG      +  AG  +EA ++++ M   G++P+ I Y+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDG------LGKAGKTEEALELLNVMVNKGISPNTIIYS 535

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +     +EG +   + +   +    I  D V + A+IS  C+  +   A      M+  
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           G  P+++TYTM+I      G  K    LL E+ S G L
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 12/223 (5%)

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +  ++ G+C+ G++  A  +  A  +          P+  T+  ++ G C  G +  A
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAVPV---------PPNAYTFFPVVRGLCTRGRIADA 130

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L++  EM  +G       +  ++   CR G    + R+L  M   G   D     +V++ 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+ G       LL+++   G    + +YNA++ GLC   +  +   L+D M+ +   P+
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            +T+N L+   C++G  E   ++    SE G   D   Y +++
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 189/345 (54%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++    +P++  FN L+  LC+ G  +    V  +  + G       + T+I+G CK  
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    + + M   G++P+V  Y+ ++ GLC   R  +AE LL EM ++    +DV F 
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M ++G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 361 ILVDFFCQNGLVD------RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLL 414

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G + + V++T ++ G C  G+ V+AE ++ +M++ G  P+  T+  +I+  CK 
Sbjct: 415 KSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKK 474

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+ + A  LL+ M++ G+ P+ I Y
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534

Query: 419 NILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     + G      + FD ++ +  + SD   Y +++S   K
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIK-DTTIRSDAVLYNAVISSLCK 578



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 10/327 (3%)

Query: 118 LEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE+LD     G +P   +++V++   C+ G  +++  V +    +G      + N ++N 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+   +DE   L   +   G   D+ +Y+A++ GLC   R  D E L+ EM      PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F TLI   C+NG  +         +++ +M  +G  PD   Y  ++DG CKEG LE 
Sbjct: 251 IVTFNTLIGYLCRNGLFE------RVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A +I   M   G++ + V +  ++ G C   +  EAE +L EM +     DD T+ +++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            FC+NG       LL++M S G +P V TY  ++NG CK G +  A MLL +M   G  P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE 440
           + ++Y I+L+G C  G   D ++L S+
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQ 451



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 178/350 (50%), Gaps = 9/350 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   ++  +G    +  +N ++  LC   +  D + + DE  +       V+FNTLI 
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIG 259

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C+    +    + + M   G  PD+  Y+ +I+G+CKE  L+ A  +L+ M   GL P
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + T++ G C   R       KEA +++ EM       D +T+ IL+D FC+ G ++
Sbjct: 320 NVVCYNTVLKGLCSAER------WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             +++ ++M+  G   D + +T +I+GFC+ G + EA  +L+ M   G KP+  +YT+V+
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              C  G       L+ +M   G  P   T+N L+N LCK G ++ A  LL  ML  G  
Sbjct: 434 KGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           PD I+Y+ +++G  K G  E+  +L +    KG+  +   Y+S+    S+
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 9/325 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N++++ +C++G + +A  +  +    G  A  VS+N ++ G C AK   +   L   M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P++ T++ LI  LC+    +    +L +M E G TP+  ++ T+IDG CK G +++
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A +      I++ M + GL P+ + Y  +L G C     + A ++  EM ++   LD+V 
Sbjct: 305 ANE------ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+  FC+ G V     +L +ML  G  PD  TYT VI+ FCK G       LLK M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G  P   +Y  ++ GLC  G+  +A  L+  M+  G  P+ +T+N L+   CK G  E
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  +    G   D   Y++++
Sbjct: 479 QAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 160/319 (50%), Gaps = 6/319 (1%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG  P+V  +N ++  LC   + K+A+ +  E  ++      V+FN L++  C+   +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M   G  PDV TY+ +ING CKE  +D+A +LL  M   G  PN V +T ++
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C  GR        +A +++ +M   G  P+ +T+  L++  CK+G +E A+++ K+M
Sbjct: 434 KGLCSAGR------WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G   D ++++ +I G  + GK  EA  +L  M+  G+ P+   Y+ +     + G  
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               ++   ++          YNA+++ LCK  +   A      M+  G +P++ TY +L
Sbjct: 548 NKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607

Query: 422 LEGHCKHGNPEDFDKLQSE 440
           ++G    G  ++  +L SE
Sbjct: 608 IKGLASEGLAKEAQELLSE 626



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++    G     +++ T+ING CK   +DE   L   M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC   R  DAE L+ +M ++G  PN V F TLI+  CK G ++
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  E AL++   M+ +GI  + +
Sbjct: 479 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++     R G+V +  +M   +    ++ D   Y  VI   CK  +T         M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S+G +P   TY  L+ GL   G  K A  LL  +   G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 6/278 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +  L    +    ++L +G  P V  +  +++  CKEG I +A M+       G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                VS+  ++ G C A    +   L S M   G  P+  T++ LIN LCK+  ++ A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   G +P+ + ++T+IDG      +  AG  +EA ++++ M   G++P+ I Y+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDG------LGKAGKTEEALELLNVMVNKGISPNTIIYS 535

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +     +EG +   + +   +    I  D V + A+IS  C+  +   A      M+  
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           G  P+++TYTM+I      G  K    LL E+ S G L
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 12/223 (5%)

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +  ++ G+C+ G++  A  +  A  +          P+  T+  ++ G C  G +  A
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAVPV---------PPNAYTFFPVVRGLCTRGRIADA 130

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L++  EM  +G       +  ++   CR G    + R+L  M   G   D     +V++ 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+ G       LL+++   G    + +YNA++ GLC   +  +   L+D M+ +   P+
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            +T+N L+   C++G  E   ++    SE G   D   Y +++
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 168/325 (51%), Gaps = 9/325 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V     L++  CK G + +A+ VFDE    GL    V++  L++G+      ++GF L  
Sbjct: 38  VTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFE 97

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ P++YTY+ LI   C+    + A  L  EM  RG+  N V + TLI G C++G
Sbjct: 98  EMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHG 157

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       +A K++D M T G  P  IT+ +L+DG+ K G + +AL    +M   G + 
Sbjct: 158 KL------WDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V +  LI+GFCR   +  A R L +M + GL+P   TYT++ID F +       F +L
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M   G      TY  L+  LC  G +K+A  L  +M + GV P ++ Y++++ G+ + 
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE 331

Query: 429 GNPEDFDKL---QSEKGLVSDYACY 450
           G+     KL     +KGL+ + A Y
Sbjct: 332 GSSYKALKLIMEMRQKGLIPNSASY 356



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 156/294 (53%), Gaps = 8/294 (2%)

Query: 115 GFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           GF L  E+   G  P++Y +N L+ + C+ G+ + A+ +FDE   RG+    VS+NTLI 
Sbjct: 92  GFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   L +  +L  +M   G RP + T++ L++G  K  ++ +A    ++M   G  P
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +  LI G C+      A DM  A + + +M   GL P K+TYTIL+D F +E  + 
Sbjct: 212 SAVTYNMLIAGFCR------ARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMG 265

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A +I   M K G+E+D   +  L+   C  G + +A ++ + M + G++P +  Y M+I
Sbjct: 266 KAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMI 325

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             + + G +    +L+ EMR  G +P   +Y   +  LCK  + + A  LLD M
Sbjct: 326 YGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDM 379



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 7/341 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+   +  LMH     G+ +    +F+E  + G+     ++N LI   C+    +  
Sbjct: 68  GLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERA 127

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G+  +V +Y+ LI GLC+  +L DA  LL  M   G  P+ + F  L+DG
Sbjct: 128 RSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDG 187

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K      AG M  A    ++M   G  P  +TY +L+ GFC+  D+  A     +M +
Sbjct: 188 YGK------AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE 241

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+E   V +T LI  F R   + +A  +L  M K GL+ D  TY +++   C  G+ K 
Sbjct: 242 RGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKD 301

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L + M   G  P+   Y+ ++ G  + G    A  L+  M   G++P+  +Y + + 
Sbjct: 302 ARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIR 361

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYAC-YTSLVSKSSKYRQK 463
             CK    ++ + L  +   +  +A  + + ++  S  +QK
Sbjct: 362 VLCKDDKCQEAEALLDDMETIRSFAGHHQNFIASKSDSQQK 402



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           DV   +AL+NG CK   + +A  +  EM   GL PN+V +T L+ G+  +G+       +
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQ------RE 90

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +   + +EM   G+ P+  TY  L+  +C+ G+ E A  +  EM  RGI  + V++  LI
Sbjct: 91  KGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           +G CR GK+ +A ++L  M   G +P   T+ +++D + K G          +M++ G  
Sbjct: 151 AGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQ 210

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           P+  TYN L+ G C+   +  AN  L  M + G+ P  +TY IL++   + 
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 285 FCKEGDLESALDIRKEMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            C  GD+ SAL +     K G   LD  A TAL++G C+GG V EA R+  EM  +GL P
Sbjct: 12  LCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAP 71

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           ++ TYT ++  +  +G  + GF L +EMR  G  P + TYN L+   C+ G+ + A  L 
Sbjct: 72  NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           D M   G+V + ++YN L+ G C+HG   D  KL
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKL 165



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L DA +   ++R    R        L+D   +    +  L F+ ++   G+ PS   +
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+L+   C+   +  A     +  +RGL  T V++  LI+   +  ++ + F + + ME 
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEK 276

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G+  D +TY  L+  LC E  + DA  L   M E+G+ P++VI+  +I G+ +      
Sbjct: 277 AGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE----- 331

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
            G   +A K++ EM   GL P+  +Y + +   CK+   + A
Sbjct: 332 -GSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEA 372



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 4/217 (1%)

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITY-TILLDGFCKEGDLESALDIRKEMIKRGIE 307
           R+  AGD++ A  ++     +G     +T  T L++G CK GD+  A  +  EM   G+ 
Sbjct: 11  RLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLA 70

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V +TAL+ G+   G+  +   +  EM + G++P+  TY  +I  +C+ G+ +    L
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM   G +  V +YN L+ GLC+HG+L +A  LLD M   G  P  IT+N+L++G+ K
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGK 190

Query: 428 HG---NPEDFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
            G   N   F       G       Y  L++   + R
Sbjct: 191 AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRAR 227


>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 502

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 234/486 (48%), Gaps = 62/486 (12%)

Query: 11  STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG---LVLDALMI 67
           +T++HFLV  K   +A+ LL  I+ K G+  +  + + I  +          +V D L+ 
Sbjct: 26  ATLIHFLVQSKKLPEAQSLLLRIIRKSGVSRAKVIDSLISSSSSNLNSNQNVVVFDLLIR 85

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            YV    L +  + F+LLRK  F +    C  L+  +++  +      +  E+   G  P
Sbjct: 86  TYVQARKLREGFEAFQLLRKRGFCVSINACNALLGSIVKVRV------YLSEMEAKGLKP 139

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            ++ +N L++ LCKEG  + A+ V D+    G    A +FN ++    + +++ E  R+ 
Sbjct: 140 GLFTYNALINGLCKEGGYESAKCVLDKMLGVGFCPDAATFNPVLVESFRKEDVWEAERVF 199

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           + M   G+ PD+ ++S++I    +   L  A     +M   GL P+ VI+T LI+G+C+N
Sbjct: 200 NEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRN 259

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
              D++G +K   ++V+  C      D +TY  LL+G C+   L+ A ++ KEM++RG+ 
Sbjct: 260 N--DVSGALKVRNEMVERSCVM----DVVTYNTLLNGLCRGKMLDDADELFKEMVERGVF 313

Query: 308 LDNVAFTALISGFCRGGKVV----------------EAERMLREMLKVGLKPDDATYTMV 351
            D    T LI G+C+ G +                 +A+ + R+M+   + P   +++++
Sbjct: 314 PDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEKAKELWRDMISREIFPHYISFSIL 373

Query: 352 IDCFC--------------KNGDTKTGFRLLKEMRSDGH--------------LPAVETY 383
           I+ FC              + G+       L  M S+G               LP + TY
Sbjct: 374 INGFCSLGLVSESLIKGYLRAGNVSKANDFLNTMVSEGVPPDCITYNTLINRLLPDLVTY 433

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
           NA++ G  +HG+++ A M+L  M+D G+ PD  TY  ++ G+    N ++  ++  E   
Sbjct: 434 NAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSVINGYVSKDNMKEAFRVHDEMLQ 493

Query: 441 KGLVSD 446
           +G V D
Sbjct: 494 RGFVPD 499



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 157/326 (48%), Gaps = 34/326 (10%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQ-MVFDEFGKRGLH-------------------ATAV 165
           SP+  +   L+H L +  K+ +AQ ++     K G+                       V
Sbjct: 19  SPNPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSRAKVIDSLISSSSSNLNSNQNVV 78

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
            F+ LI  + +A+ L EGF    ++   G    +   +AL+  + K        + L EM
Sbjct: 79  VFDLLIRTYVQARKLREGFEAFQLLRKRGFCVSINACNALLGSIVK------VRVYLSEM 132

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT-ILLDG 284
             +GL P    +  LI+G CK G        + A+ ++D+M   G  PD  T+  +L++ 
Sbjct: 133 EAKGLKPGLFTYNALINGLCKEG------GYESAKCVLDKMLGVGFCPDAATFNPVLVES 186

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           F KE D+  A  +  EM++ G+  D ++F+++I  F R G++  A     +M  VGL PD
Sbjct: 187 FRKE-DVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPD 245

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
              YT++I+ +C+N D     ++  EM     +  V TYN L+NGLC+   L +A+ L  
Sbjct: 246 TVIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFK 305

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGN 430
            M++ GV PD  T   L+ G+CK GN
Sbjct: 306 EMVERGVFPDFYTLTTLIHGYCKDGN 331



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 38/271 (14%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L ++ ++   G  P   ++ +L++  C+   +  A  V +E  +R      V++NTL+N
Sbjct: 230 ALAYFEKMKGVGLVPDTVIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLN 289

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE----------------NRLD 216
           G C+ K LD+   L   M   G+ PD YT + LI+G CK+                + ++
Sbjct: 290 GLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEME 349

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID--------MAGDMKEARKIVDEMCT 268
            A+ L  +M  R + P+ + F+ LI+G C  G +          AG++ +A   ++ M +
Sbjct: 350 KAKELWRDMISREIFPHYISFSILINGFCSLGLVSESLIKGYLRAGNVSKANDFLNTMVS 409

Query: 269 NGLNPDKITYTILLD--------------GFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
            G+ PD ITY  L++              GF + G ++ A  +  +MI +GI  D   +T
Sbjct: 410 EGVPPDCITYNTLINRLLPDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYT 469

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           ++I+G+     + EA R+  EML+ G  PDD
Sbjct: 470 SVINGYVSKDNMKEAFRVHDEMLQRGFVPDD 500


>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 823

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 160/304 (52%), Gaps = 6/304 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  +N+L+++LCKEGK + A  + DE  K+GL  T +S+  LI  +CK+K  D   +L
Sbjct: 343 PDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKL 402

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              +   G +PD+ TY  LI+GL     +DDA  +  ++ +RG++P+  I+  L+ G CK
Sbjct: 403 LLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCK 462

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR         A+ +  EM    + PD   Y  L+DGF + GD + A  +    +++G+
Sbjct: 463 TGR------FLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGV 516

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           ++D V   A+I GFCR G + EA   +  M +  L PD  TY+ +ID + K  D  T  +
Sbjct: 517 KVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIK 576

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + ++M  +   P V TY +L+NG C  G    A      M    +VP+ +TY  L+    
Sbjct: 577 IFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFA 636

Query: 427 KHGN 430
           K  +
Sbjct: 637 KESS 640



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 173/345 (50%), Gaps = 25/345 (7%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           ++++D G SP   ++N+LM  LCK G+   A+++F E   R +   A  + TLI+G  ++
Sbjct: 439 VKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRS 498

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            + DE  ++ ++    G++ DV  ++A+I G C+   LD+A   ++ M E  L P+   +
Sbjct: 499 GDFDEARKVFTLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTY 558

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           +T+IDG+ K        DM  A KI  +M  N   P+ +TYT L++GFC +GD   A + 
Sbjct: 559 STIIDGYVKQ------QDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEET 612

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE-MLKVGLKPDDATYTMVIDCFC 356
            KEM  R +  + V +T LI  F +    +E      E M+     P++ T+  ++  F 
Sbjct: 613 FKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFV 672

Query: 357 K--------------NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           K              +G +   F     M+SDG       YN+++  LC HG +K A ML
Sbjct: 673 KKTSGRFLGEPDGFNHGQSFLFFEFFHRMKSDGWSDHGAAYNSVLVCLCVHGMVKTACML 732

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ----SEKGL 443
            D M+  G  PD +++  +L G C  GN + +  +      EKGL
Sbjct: 733 QDRMVKKGFSPDPVSFAAILHGFCVVGNSKQWRNMDFRNLDEKGL 777



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 211/454 (46%), Gaps = 35/454 (7%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           A S+ +  L  H++ ++  D+L                   L      L    L  ++  
Sbjct: 101 ACSSFLKLLARHRIFNEIEDVL-----------------GNLRNENVKLTHEALSHVLHA 143

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           Y + GFL  A++ +  + + Y  +P    C  L+  ++++         Y E+ + G   
Sbjct: 144 YAESGFLSKAVEIYDYVVELYDSVPDVIACNALLSLVVKSRRLEDARKVYDEMCERGGCV 203

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
             Y   +++  +C EGK+++ + + ++   +G     V +NT+I G+CK  +++    + 
Sbjct: 204 DNYSTCIMVKGMCSEGKVEEGRKLIEDRWGKGCVPNIVFYNTIIGGYCKLGDIENAKLVF 263

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             ++  G  P + T+  +ING CK+     ++ LL E+ ERGL         +ID   ++
Sbjct: 264 KELKLKGFMPTLETFGTMINGFCKKGDFVASDRLLEEVKERGLRVCVWFLNNIIDAKYRH 323

Query: 248 G-RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           G ++D A   +  R IV     N   PD  TY IL++  CKEG  E A  +  E  K+G+
Sbjct: 324 GFKVDPA---ESIRWIV----ANDCKPDIATYNILINRLCKEGKKEVAAGLLDEASKKGL 376

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            L N+++  LI  +C+  +   A ++L ++ + G KPD  TY ++I     +G       
Sbjct: 377 ILTNLSYAPLIQAYCKSKEYDIASKLLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVN 436

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +  ++   G  P    YN LM+GLCK G+   A +L   MLD  ++PD   Y  L++G  
Sbjct: 437 MKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFI 496

Query: 427 KHGNPEDFDK------LQSEKGLVSDYACYTSLV 454
           + G   DFD+      L  EKG+  D   + +++
Sbjct: 497 RSG---DFDEARKVFTLSVEKGVKVDVVHHNAMI 527


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 203/458 (44%), Gaps = 104/458 (22%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ---------- 149
           L+  + R  +    +  Y  +L  G  P++ ++N +++ LCK+G + DA+          
Sbjct: 186 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE 245

Query: 150 -------------------------MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
                                     VF++  K G     V+++TLING C +  ++E F
Sbjct: 246 MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAF 305

Query: 185 -----------------------------------RLKSVMEGSGMRPDVYTYSALINGL 209
                                              RL   M+  G  P+VYTY+ALI+GL
Sbjct: 306 DLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGL 365

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------- 253
           C    L  A  L H M   G+ PN V +  LI+   +N RI  A                
Sbjct: 366 CVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNI 425

Query: 254 -------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
                        GD K+A  +++ M   G + + +TY  ++ G+C  G+  SAL I   
Sbjct: 426 VTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDL 485

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G + D  ++T LI GFC+  K+  A  +  EM+  GL P++ TYT +ID +CK+  
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
             T   LL+ M+  G  P V+TYN L++GL K      A  L   M++ G+ P+ +TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 421 LLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLV 454
           +++G CK+G+     E F+K+  E+G + +   Y+SL+
Sbjct: 606 MIDGLCKNGSTSLALEMFNKM-IEQGCLPNLLTYSSLI 642



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            ++++ + G  P+VY +  L+  LC  G +K A  +F    + G+    V++N LIN   
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILV 401

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           + + +   F + ++M  +G  P++ TY+ +I G C       A L+++ M +RG + N V
Sbjct: 402 ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLV 461

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T+I G+C       +G+   A +I+D M   G  PD+ +YT L+ GFCK   +ESA 
Sbjct: 462 TYNTIIKGYCD------SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM+  G+  + V +TALI G+C+  K+  A  +L  M + G +P+  TY ++I   
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K  +      L K M  +G  P V TY A+++GLCK+G    A  + + M++ G +P+ 
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +TY+ L+    + G  E+ + L +E    GL+ D   Y  ++
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 161/301 (53%), Gaps = 6/301 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP++  +N ++   C  G  K A +V +   +RG  A  V++NT+I G+C + N    
Sbjct: 420 GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 479

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+  +M   G +PD ++Y+ LI G CK ++++ A  L +EM + GL PN+V +T LIDG
Sbjct: 480 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 539

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK+ ++D       A  +++ M  +G  P+  TY +L+ G  K+ +   A ++ K MI+
Sbjct: 540 YCKDEKLD------TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  + V +TA+I G C+ G    A  M  +M++ G  P+  TY+ +I    + G  + 
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  E+   G +P   TY  ++      G++++A   L  M+  G  P   TY +L++
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 424 G 424
           G
Sbjct: 714 G 714



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 11/346 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T+ F   +   G    ++ ++ L+  L + G        +      G+    + +N +IN
Sbjct: 164 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 223

Query: 173 GHCKAKNL-DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             CK  N+ D    +K V E S M PD +TY+++I G C+++ LD A  + ++M + G  
Sbjct: 224 ALCKDGNVADAETIMKKVFE-SEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 282

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN V ++TLI+G C +GR++      EA  ++ EM  +G+ P   T T  +   C  G  
Sbjct: 283 PNTVTYSTLINGLCDSGRVN------EAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           E A  +  +M  +G E +   +TALISG C  G +  A  +   M + G+ P+  TY  +
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I+   +N   K  F +L  M  +G  P + TYN ++ G C  G  K A ++++ ML  G 
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 412 VPDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
             + +TYN +++G+C  GN     +   L  + G   D   YT L+
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 170/431 (39%), Gaps = 91/431 (21%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P  + +  L+   CK  K++ A  +F+E    GL    V++  LI+G+CK + LD
Sbjct: 488 DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLD 547

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M+ SG RP+V TY+ LI+GL K+N    AE L   M E G+ PN V +T +I
Sbjct: 548 TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DG CKNG   +A                             G ++EA  +  E+  +GL 
Sbjct: 608 DGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 667

Query: 273 PDKIT-----------------------------------YTILLDGF------------ 285
           PD+IT                                   Y +L+ G             
Sbjct: 668 PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLA 727

Query: 286 --------CKEGDLESALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERML 333
                   C  G   +  D    M  +  ELD         AL+S     G+  EA  +L
Sbjct: 728 ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M+  GL PD   Y  ++    +  +      + K M + G    +  Y  L+  LC+ 
Sbjct: 788 GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQL 847

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
            + K A +  + ML     PDD+   +L++G  + G  +   +F  +   +  +  +  Y
Sbjct: 848 HRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIY 907

Query: 451 TSLVSKSSKYR 461
           T L  ++SK R
Sbjct: 908 TILAREASKKR 918



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 18/305 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    ++ L  + ++++ G  P++  ++ L+  L +EGK+++A+ +F E  + G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++  +I  +  +  ++  F     M  +G +P ++TY  LI GL  E  L D  
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 725

Query: 220 LL----LHEMCERGLTPNDVIFTTLIDG-----------HCKNG---RIDMAGDMKEARK 261
           L     +   C  G    D    +++               +N     +  AG   EA +
Sbjct: 726 LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 785

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++  M + GL PD+  Y  LL    +  +++ A+ + K M  +G E+    +  LI   C
Sbjct: 786 LLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 845

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           +  +  EA      ML     PDD    ++ID   ++G        L  M +  ++P+  
Sbjct: 846 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFH 905

Query: 382 TYNAL 386
            Y  L
Sbjct: 906 IYTIL 910



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           M      +D +  +GL      Y+ LL    + G   + +D    M+  G++ + + + A
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I+  C+ G V +AE +++++ +  + PD  TYT +I   C+  D  +  ++  +M  +G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             P   TY+ L+NGLC  G++  A  L+  M+  G++P   T    +   C  G  ED  
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 436 KL---QSEKGLVSDYACYTSLVS 455
           +L      KG   +   YT+L+S
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALIS 363


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 167/309 (54%), Gaps = 10/309 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G+SP V   + ++  LC  G +  A   F E  +      +V FN L++G CKA 
Sbjct: 130 EMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKAN 187

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L E  ++   M   G+ PDV TY++LI+GLCK  R+++A  LL  M +R + PN V + 
Sbjct: 188 QLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYN 247

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G+CK G   +A       ++++ M  +G +PD +T+  L+ GFC++  ++ A ++ 
Sbjct: 248 TLIYGYCKTGCTGLA------HQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL 301

Query: 299 KEMIKRGIELDN-VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             ++K+G+   N V +  LISG C  G+  EA  +L EM   G+ PD  TY  +I  FC+
Sbjct: 302 -HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCR 360

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           N   +  F++   M   G +P   +Y  L   L K  +   A  LLD M D G +P+  T
Sbjct: 361 NFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFT 420

Query: 418 YNILLEGHC 426
           +N L+EG C
Sbjct: 421 FNSLMEGLC 429



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 12/328 (3%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVF-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  N L+  L K  +   A  +F DE   +      +++NTLI G CKA +++  F+L +
Sbjct: 70  FTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLA 129

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M+  G  PDV T+S+++  LC    L  A     E  E    P+ V+F  L+ G CK  
Sbjct: 130 EMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCK-- 185

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
               A  + EAR++++EM   G+ PD +TY  L+DG CK   +E A  + + M+KR +  
Sbjct: 186 ----ANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRP 241

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           + V +  LI G+C+ G    A +++  M++ G  PD  T+  +I  FC+         +L
Sbjct: 242 NLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL 301

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M+     P + TYN L++GLC  G+   A  LL  M   G++PD ITYN L+   C++
Sbjct: 302 HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRN 361

Query: 429 GNPEDFDKLQS---EKGLVSDYACYTSL 453
              E   ++Q+   E+G++ D   Y +L
Sbjct: 362 FQIEQAFQIQNLMVERGVIPDGISYCTL 389



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 155/317 (48%), Gaps = 29/317 (9%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P   +FN+L+H LCK  ++ +A+ + +E  +RG+    V++N+LI+G CK+  ++E  +
Sbjct: 170 APDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQ 229

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M    +RP++ TY+ LI G CK      A  L+  M + G  P+ V F +LI G C
Sbjct: 230 LLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFC 289

Query: 246 KNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKI 276
           +  +ID A                             G   EA +++ EM   G+ PD I
Sbjct: 290 QKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDII 349

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+  FC+   +E A  I+  M++RG+  D +++  L     +  +  EA  +L  M
Sbjct: 350 TYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNM 409

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G  P+  T+  +++  C +        LL  MR  G  PA  TY  L+ GLCK G++
Sbjct: 410 FDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRV 469

Query: 397 KNANMLLDTMLDLGVVP 413
            +A  +L  M+  G+ P
Sbjct: 470 DDAKEVLVMMVSEGIQP 486



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 144/297 (48%), Gaps = 6/297 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++  +N L++  CK G    A  + +   + G H   V+FN+LI+G C+   +D+   +
Sbjct: 241 PNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEV 300

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M+     P++ TY+ LI+GLC   R ++A  LL EM  RG+ P+ + + +LI   C+
Sbjct: 301 LHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCR 360

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           N +I+      +A +I + M   G+ PD I+Y  L     K    + A  +   M   G 
Sbjct: 361 NFQIE------QAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGA 414

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   F +L+ G C   ++ EA  +L  M +VG  P  +TY +++   CK G       
Sbjct: 415 IPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKE 474

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           +L  M S+G  P V +   +++ L + G+   A    D ++       D +Y  LLE
Sbjct: 475 VLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLE 531



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 309 DNVAFTALISGFCRGGKVVEAERMLR-EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
           +N     L+    +  +  +A ++ R E+L      +  TY  +I  FCK GD +  F+L
Sbjct: 68  NNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQL 127

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L EM+  GH P V T+++++  LC  G L  A       ++    PD + +NIL+ G CK
Sbjct: 128 LAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECA--PDSVLFNILVHGLCK 185

Query: 428 HGNPEDFDKL---QSEKGLVSDYACYTSLVS---KSSKYRQKR 464
                +  ++    SE+G+V D   Y SL+    KS +  + R
Sbjct: 186 ANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEAR 228



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G  P    +  L   L K  +  +A  + D     G      +FN+L+ G C ++ 
Sbjct: 374 MVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRR 433

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LDE   L +VM   G  P   TY  L+ GLCK  R+DDA+ +L  M   G+ P      T
Sbjct: 434 LDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGT 493

Query: 240 LIDGHCKNGRIDMA 253
           ++    + G+ D+A
Sbjct: 494 IVHTLAREGKQDLA 507


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 34/376 (9%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y+E+L+ G  P+++ FN ++  LC +GK+++A+++       G      ++ +LI GHCK
Sbjct: 190 YIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCK 249

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             NLD  F +   M   G  P+  TYSALINGLC E RL++A  +L EM ++G+ P    
Sbjct: 250 NGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHA 309

Query: 237 FTTLIDGHCKNGR----IDMAGDMKE-------------------------ARKIVDEMC 267
           +T  I   C  GR    + + G MK+                         A  +  +M 
Sbjct: 310 YTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKML 369

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
            +GL P  +TY+ L++    EG  E+AL I + M+      +   +  +I GFC  G + 
Sbjct: 370 ADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQ 429

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A  +  +MLK G  P+  TY ++I  + K G      RLL+ M+ +G      TY  L+
Sbjct: 430 KATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLI 489

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGL 443
           +G  + G+L++A  L + M++ G+ P+ +TYN ++ G+      +D    F K+  E G 
Sbjct: 490 SGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKM-VESGN 548

Query: 444 VSDYACYTSLVSKSSK 459
           V     Y  ++S  SK
Sbjct: 549 VPSSGTYNMMISGFSK 564



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 183/346 (52%), Gaps = 24/346 (6%)

Query: 86  RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK-EGK 144
           R H+F+        +++R++R  L               + P+  V  +LM K C+ EG+
Sbjct: 103 RTHFFKHDMSCFVSMLNRLVRDRL---------------FVPADNV-RILMIKSCRNEGE 146

Query: 145 IKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +K    V  E         T  SF+TL+    K      G  +   M  SG+RP+++T++
Sbjct: 147 VKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFN 206

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           A+I  LC + ++ +AEL++  +   G  P+   +T+LI GHCKNG +D+A +M       
Sbjct: 207 AMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEM------F 260

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M  +G +P+ +TY+ L++G C EG LE A+D+ +EMI +GIE    A+T  I   C  
Sbjct: 261 DRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDA 320

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  EA ++L +M K G  P+  TYT +I    ++G  +    +  +M +DG +P   TY
Sbjct: 321 GRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTY 380

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +AL+N L   G+ + A  + + ML    +P+  TYN++++G C  G
Sbjct: 381 SALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIG 426



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 10/301 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
            + +  L+    + GK++ A  +F+E  + G+    V++N +ING+     +D+   L  
Sbjct: 482 TWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFW 541

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  SG  P   TY+ +I+G  K NR+ +AE    +M ++GL PN + +T+ IDG CKNG
Sbjct: 542 KMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNG 601

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R  +A       KI  EM      P+  TY+ L+DG C+EG  E A    + ++  G E 
Sbjct: 602 RTSLA------FKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDA----ERLLDDGCEP 651

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   +T L+ G C  G+  EA++++  M K GL+P +  Y  ++   CKN + ++  ++ 
Sbjct: 652 NVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIF 711

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M + G  P +  Y AL+  LCK    + A  +  TML      D++ + +LL+G  K 
Sbjct: 712 DSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKE 771

Query: 429 G 429
           G
Sbjct: 772 G 772



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 187/374 (50%), Gaps = 20/374 (5%)

Query: 91  RIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++  RGC         LI  + R     V +G Y ++L  G  P+   ++ L+++L  EG
Sbjct: 332 KMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEG 391

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           + + A  +F+            ++N +I G C    + +   +   M  +G  P+V TY+
Sbjct: 392 RFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYN 451

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +I+   K+  +++A  LL  M   GL  +   +  LI G  + G+++       A  + 
Sbjct: 452 IIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLE------HAFSLF 505

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           +EM  +G++P+ +TY  +++G+     ++ AL +  +M++ G    +  +  +ISGF + 
Sbjct: 506 NEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKT 565

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            ++ EAE    +M+K GL P+  TYT  ID  CKNG T   F++  EM+   + P + TY
Sbjct: 566 NRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTY 625

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           ++L++GLC+ GQ ++A  LLD     G  P+  TY  L+ G C  G   + D+L     +
Sbjct: 626 SSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKK 681

Query: 441 KGLVSDYACYTSLV 454
           KGL      Y +L+
Sbjct: 682 KGLQPSEEIYRALL 695



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 160/342 (46%), Gaps = 26/342 (7%)

Query: 58  PGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P ++   ++I +Y   G++++A++   +++ +  ++       LI    R          
Sbjct: 445 PNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSL 504

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E++++G SP+V  +N +++      K+ DA  +F +  + G   ++ ++N +I+G  K
Sbjct: 505 FNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSK 564

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + E       M   G+ P+V TY++ I+GLCK  R   A  + HEM +R   PN   
Sbjct: 565 TNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCT 624

Query: 237 FTTLIDGHCKNGRIDMA-------------------------GDMKEARKIVDEMCTNGL 271
           +++LIDG C+ G+ + A                         G   EA ++V+ M   GL
Sbjct: 625 YSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGL 684

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P +  Y  LL G CK  ++ESAL I   M+  G +     + ALI   C+     +A+ 
Sbjct: 685 QPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQC 744

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           M + MLK     D+  +T+++D   K G+T     LL  M S
Sbjct: 745 MFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMES 786



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 48/302 (15%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-RCLID 102
           SLF  ++E  G     +  +A++  Y+ +  +DDA+  F  + +    +P+ G    +I 
Sbjct: 503 SLFNEMVE-HGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG-NVPSSGTYNMMIS 560

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              +TN  +    F  +++  G  P+V  +   +  LCK G+   A  +F E  KR    
Sbjct: 561 GFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFP 620

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
              ++++LI+G C+    ++  RL       G  P+V TY+ L+ GLC + R  +A+ L+
Sbjct: 621 NLCTYSSLIDGLCQEGQAEDAERLLD----DGCEPNVDTYTTLVRGLCGKGRCYEADQLV 676

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP--------- 273
             M ++GL P++ I+  L+ G CKN  ++       A KI D M T G  P         
Sbjct: 677 ESMKKKGLQPSEEIYRALLVGQCKNLEVE------SALKIFDSMVTTGFQPCLSDYKALI 730

Query: 274 --------------------------DKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                                     D++ +T+LLDG  KEG+ + +L++   M  R   
Sbjct: 731 CALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCT 790

Query: 308 LD 309
           L+
Sbjct: 791 LN 792



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 3/167 (1%)

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           D+  EM+  GI  +   F A+I   C  GKV EAE ++  +   G  PD  TYT +I   
Sbjct: 188 DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGH 247

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CKNG+    F +   M  DG  P   TY+AL+NGLC  G+L+ A  +L+ M+D G+ P  
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307

Query: 416 ITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
             Y I +   C  G   +  KL     ++G   +   YT+L+S  S+
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSR 354



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 11/224 (4%)

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F+TL+    + G+ DM G     R +  EM  +G+ P+  T+  ++   C +G ++ A  
Sbjct: 170 FSTLL---IQLGKFDMDG---LGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAEL 223

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           I   +   G   D   +T+LI G C+ G +  A  M   M+K G  P+  TY+ +I+  C
Sbjct: 224 IMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLC 283

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             G  +    +L+EM   G  P V  Y   +  LC  G+   A  LL  M   G  P+  
Sbjct: 284 SEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQ 343

Query: 417 TYNILLEGHCKHGNPE----DFDKLQSEKGLVSDYACYTSLVSK 456
           TY  L+ G  + G  E     + K+ ++ GLV     Y++L+++
Sbjct: 344 TYTALISGLSRDGKFEVAIGVYHKMLAD-GLVPTAVTYSALINQ 386


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 173/343 (50%), Gaps = 10/343 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + +       +    +I   G +P++  +N L++ LCK G++++A  +  +    G
Sbjct: 171 IVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 230

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++ +LI+G  K K   E ++L   M   G+  D   Y+ALI GL +  ++  A 
Sbjct: 231 CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQAS 290

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  P+ V  +T+IDG CK GRI        A +I   M   GL P+++ Y+
Sbjct: 291 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIG------AAVRIFKSMEARGLAPNEVVYS 344

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G CK   ++ AL++  +M K     D + +  LI G C+ G V  A     EML+ 
Sbjct: 345 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEA 404

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G KPD  TY +++  FCK G+T     +  +M S    P V TY  L++GLCK  QL  A
Sbjct: 405 GCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKA 464

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQ 438
           ++    M + G  PD   Y+ L++G CK G  E     FD+++
Sbjct: 465 SLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEME 507



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 196/400 (49%), Gaps = 14/400 (3%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLR--KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           DA++ ++  L   D A + F+ L   +  F+        L+D   RT             
Sbjct: 26  DAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNE 85

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-RGLHATAVSFNTLINGHCKAKN 179
           L   + P V  +NVL+   C   + ++A  V  E  +  G+  +  + N +++G CK+  
Sbjct: 86  LATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGK 145

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +            +G   D++TY+A+++ L K  ++ DA  L+ ++   G TP    +  
Sbjct: 146 VLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNA 205

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L++G CK GR++ A D+   RKIVD    NG  PD +TYT L+DG  KE     A  + K
Sbjct: 206 LLNGLCKMGRLEEAIDL--LRKIVD----NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 259

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  RG+ LD V +TALI G  + GK+ +A  + + M   G  PD  T + +ID  CK G
Sbjct: 260 EMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAG 319

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                 R+ K M + G  P    Y+AL++GLCK  ++  A  +L  M      PD ITYN
Sbjct: 320 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYN 379

Query: 420 ILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           IL++G CK G+ E     FD++  E G   D   Y  LVS
Sbjct: 380 ILIDGLCKSGDVEAARAFFDEML-EAGCKPDVYTYNILVS 418



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/348 (33%), Positives = 173/348 (49%), Gaps = 16/348 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+D G +P V  +  L+  L KE +  +A  +F E   RGL    V +  LI G  +A 
Sbjct: 225 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAG 284

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + +   +   M   G  PDV T S +I+GLCK  R+  A  +   M  RGL PN+V+++
Sbjct: 285 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 344

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G CK  ++D A +M    K     CT    PD ITY IL+DG CK GD+E+A    
Sbjct: 345 ALIHGLCKARKMDCALEMLAQMK--KAFCT----PDTITYNILIDGLCKSGDVEAARAFF 398

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM++ G + D   +  L+SGFC+ G    A  +  +M      P+  TY  +I   CK 
Sbjct: 399 DEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKR 458

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                     + M+  G  P    Y++L++GLCK G+L+   ML D M   GV  +  T 
Sbjct: 459 RQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVA-NSQTR 517

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS---KSSK 459
             L+   CK    ++    F+ ++ E G+   YA Y S++S   KS+K
Sbjct: 518 TRLIFHLCKANRVDEAVSLFNAIRKE-GMPHPYA-YNSIISTLIKSAK 563


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 175/352 (49%), Gaps = 26/352 (7%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ + + +LM  LCKEG++++A  +  E  ++GL    V ++TLI+G C    LD G  L
Sbjct: 43  PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKAL 102

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+ P+V  YS LING CK+    +A  +LH M ERG+ P+   +T +I G CK
Sbjct: 103 FDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCK 162

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +GR       ++A  + D M   G  P  +TY +L++G CKEG +  A  I + M+++G 
Sbjct: 163 DGR------ARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGK 216

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVG--LKPDDATYTMVIDCFCKNGDTKTG 364
            L+ V++  LI G C  GK+ EA ++   +L+ G  ++PD  T+  VI   CK G     
Sbjct: 217 RLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKA 276

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +   M   G    + T + L+    K G +  A  L   +  LG+VP   TY+++++G
Sbjct: 277 VEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDG 336

Query: 425 HCKHGNPEDFDKLQSEKGLVS------------DYACYTSLVSKSSKYRQKR 464
            CK         L   KGL S            DY    + + K S   Q R
Sbjct: 337 FCK------MHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQAR 382



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 177/373 (47%), Gaps = 34/373 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G    V V++ L+   C +G +   + +FDE  ++G+    V ++ LING CK     E 
Sbjct: 75  GLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREA 134

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M   G++PDVYTY+ +I GLCK+ R   A  L   M E+G  P+ V +  LI+G
Sbjct: 135 TAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLING 194

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG--LN 272
            CK G I  A                             G + EA K+   +  +G  + 
Sbjct: 195 LCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVE 254

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD IT+  ++ G CKEG L+ A++I   MI+RG   +      LI  + + G + +A  +
Sbjct: 255 PDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMEL 314

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            + + K+GL P   TY+++ID FCK         L   M+  G  P +  YN LM  LCK
Sbjct: 315 WKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCK 374

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYAC 449
              L+ A  L   M +    PD I++NI+++G  K G+     +L     + GL  D   
Sbjct: 375 ESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYT 434

Query: 450 YTSLVSKSSKYRQ 462
           Y+S +++ SK  Q
Sbjct: 435 YSSFINRLSKLGQ 447



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 172/333 (51%), Gaps = 11/333 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  +N +++ LCKE +++ A  +  E         + ++  L++G CK   ++E  RL
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M+  G+  DV  YS LI+G C +  LD  + L  EM E+G++PN V+++ LI+G CK
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G        +EA  ++  M   G+ PD  TYT ++ G CK+G    ALD+   M ++G 
Sbjct: 128 KGL------WREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E   V +  LI+G C+ G + +A ++   ML+ G + +  +Y  +I   C NG      +
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 367 LLKEMRSDGHL--PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           L   +  DG+   P V T+N ++ GLCK G+L  A  + DTM++ G   +  T +IL+  
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGE 301

Query: 425 HCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           + K G      +  K   + GLV     Y+ ++
Sbjct: 302 YIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMI 334



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 11/399 (2%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+    SK  +    +LF  +LE +G     +V   L+  +   G   +A      + + 
Sbjct: 86  LISGFCSKGCLDRGKALFDEMLE-KGISPNVVVYSCLINGFCKKGLWREATAVLHTMTER 144

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
             +       C+I  + +       L  +  + + G  PS   +NVL++ LCKEG I DA
Sbjct: 145 GIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDA 204

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM--EGSGMRPDVYTYSALI 206
             +F+   ++G     VS+NTLI G C    LDE  +L S +  +G+ + PDV T++ +I
Sbjct: 205 FKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVI 264

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-KEARKIVDE 265
            GLCKE RLD A  +   M ERG   N      LI  + K+G ID A ++ K   K+   
Sbjct: 265 QGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKL--- 321

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
               GL P   TY++++DGFCK   L  A  +   M   G+      +  L++  C+   
Sbjct: 322 ----GLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESS 377

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + +A R+ +EM +   +PD  ++ ++ID   K GD  +   LL +M+  G  P   TY++
Sbjct: 378 LEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSS 437

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            +N L K GQ++ A    D+M+  G+ PD+  Y+ L++G
Sbjct: 438 FINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKG 476



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 9/228 (3%)

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           + P+ V + T+I+G CK  R++ A D+      + EM  +   P+  TY IL+DG CKEG
Sbjct: 6   ILPDIVSYNTIINGLCKEKRLEKAVDL------LVEMEGSSCEPNSFTYCILMDGLCKEG 59

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +E A+ +  EM ++G+E+D V ++ LISGFC  G +   + +  EML+ G+ P+   Y+
Sbjct: 60  RVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYS 119

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I+ FCK G  +    +L  M   G  P V TY  ++ GLCK G+ + A  L D M + 
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           G  P  +TYN+L+ G CK G   D  K+     EKG   +   Y +L+
Sbjct: 180 GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLI 227



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 164/338 (48%), Gaps = 9/338 (2%)

Query: 39  MGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK--HYFRIPARG 96
           +G +  +F ++LE +G  L  +  + L++   + G LD+A++ F  L +  +Y       
Sbjct: 201 IGDAFKIFETMLE-KGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVIT 259

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +I  + +       +  Y  +++ G   +++  ++L+ +  K G I  A  ++    
Sbjct: 260 FNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVH 319

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K GL  ++ +++ +I+G CK   L+    L S M+ SG+ P ++ Y+ L+  LCKE+ L+
Sbjct: 320 KLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLE 379

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L  EM E    P+ + F  +IDG  K      AGD+  A++++++M   GL PD  
Sbjct: 380 QARRLFQEMKESNCEPDTISFNIMIDGTLK------AGDIHSAKELLNDMQQMGLTPDAY 433

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY+  ++   K G +E A      MI  GI  DN  + +LI GF    ++ E   +LR+M
Sbjct: 434 TYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQM 493

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
             +G+  D      ++   C + +      LL    S+
Sbjct: 494 ADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSSE 531


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 203/458 (44%), Gaps = 104/458 (22%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ---------- 149
           L+  + R  +    +  Y  +L  G  P++ ++N +++ LCK+G + DA+          
Sbjct: 186 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE 245

Query: 150 -------------------------MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
                                     VF++  K G     V+++TLING C +  ++E F
Sbjct: 246 MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAF 305

Query: 185 -----------------------------------RLKSVMEGSGMRPDVYTYSALINGL 209
                                              RL   M+  G  P+VYTY+ALI+GL
Sbjct: 306 DLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGL 365

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------- 253
           C    L  A  L H M   G+ PN V +  LI+   +N RI  A                
Sbjct: 366 CVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNI 425

Query: 254 -------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
                        GD K+A  +++ M   G + + +TY  ++ G+C  G+  SAL I   
Sbjct: 426 VTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDL 485

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G + D  ++T LI GFC+  K+  A  +  EM+  GL P++ TYT +ID +CK+  
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
             T   LL+ M+  G  P V+TYN L++GL K      A  L   M++ G+ P+ +TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 421 LLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLV 454
           +++G CK+G+     E F+K+  E+G + +   Y+SL+
Sbjct: 606 MIDGLCKNGSTSLALEMFNKM-IEQGCLPNLLTYSSLI 642



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            ++++ + G  P+VY +  L+  LC  G +K A  +F    + G+    V++N LIN   
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILV 401

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           + + +   F + ++M  +G  P++ TY+ +I G C       A L+++ M +RG + N V
Sbjct: 402 ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLV 461

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T+I G+C       +G+   A +I+D M   G  PD+ +YT L+ GFCK   +ESA 
Sbjct: 462 TYNTIIKGYCD------SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM+  G+  + V +TALI G+C+  K+  A  +L  M + G +P+  TY ++I   
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K  +      L K M  +G  P V TY A+++GLCK+G    A  + + M++ G +P+ 
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +TY+ L+    + G  E+ + L +E    GL+ D   Y  ++
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 161/301 (53%), Gaps = 6/301 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G SP++  +N ++   C  G  K A +V +   +RG  A  V++NT+I G+C + N    
Sbjct: 420 GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 479

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+  +M   G +PD ++Y+ LI G CK ++++ A  L +EM + GL PN+V +T LIDG
Sbjct: 480 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 539

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK+ ++D       A  +++ M  +G  P+  TY +L+ G  K+ +   A ++ K MI+
Sbjct: 540 YCKDEKLD------TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  + V +TA+I G C+ G    A  M  +M++ G  P+  TY+ +I    + G  + 
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  E+   G +P   TY  ++      G++++A   L  M+  G  P   TY +L++
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 424 G 424
           G
Sbjct: 714 G 714



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 11/346 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T+ F   +   G    ++ ++ L+  L + G        +      G+    + +N +IN
Sbjct: 164 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 223

Query: 173 GHCKAKNL-DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             CK  N+ D    +K V E S M PD +TY+++I G C+++ LD A  + ++M + G  
Sbjct: 224 ALCKDGNVADAETIMKKVFE-SEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 282

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN V ++TLI+G C +GR++      EA  ++ EM  +G+ P   T T  +   C  G  
Sbjct: 283 PNTVTYSTLINGLCDSGRVN------EAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           E A  +  +M  +G E +   +TALISG C  G +  A  +   M + G+ P+  TY  +
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I+   +N   K  F +L  M  +G  P + TYN ++ G C  G  K A ++++ ML  G 
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 412 VPDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
             + +TYN +++G+C  GN     +   L  + G   D   YT L+
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 170/431 (39%), Gaps = 91/431 (21%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G  P  + +  L+   CK  K++ A  +F+E    GL    V++  LI+G+CK + LD
Sbjct: 488 DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLD 547

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M+ SG RP+V TY+ LI+GL K+N    AE L   M E G+ PN V +T +I
Sbjct: 548 TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607

Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
           DG CKNG   +A                             G ++EA  +  E+  +GL 
Sbjct: 608 DGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 667

Query: 273 PDKIT-----------------------------------YTILLDGF------------ 285
           PD+IT                                   Y +L+ G             
Sbjct: 668 PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLA 727

Query: 286 --------CKEGDLESALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERML 333
                   C  G   +  D    M  +  ELD         AL+S     G+  EA  +L
Sbjct: 728 ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M+  GL PD   Y  ++    +  +      + K M + G    +  Y  L+  LC+ 
Sbjct: 788 GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQL 847

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
            + K A +  + ML     PDD+   +L++G  + G  +   +F  +   +  +  +  Y
Sbjct: 848 HRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIY 907

Query: 451 TSLVSKSSKYR 461
           T L  ++SK R
Sbjct: 908 TILAREASKKR 918



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 18/305 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    ++ L  + ++++ G  P++  ++ L+  L +EGK+++A+ +F E  + G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++  +I  +  +  ++  F     M  +G +P ++TY  LI GL  E  L D  
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 725

Query: 220 LL----LHEMCERGLTPNDVIFTTLIDG-----------HCKNG---RIDMAGDMKEARK 261
           L     +   C  G    D    +++               +N     +  AG   EA +
Sbjct: 726 LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 785

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++  M + GL PD+  Y  LL    +  +++ A+ + K M  +G E+    +  LI   C
Sbjct: 786 LLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 845

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           +  +  EA      ML     PDD    ++ID   ++G        L  M +  ++P+  
Sbjct: 846 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFH 905

Query: 382 TYNAL 386
            Y  L
Sbjct: 906 IYTIL 910



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           M      +D +  +GL      Y+ LL    + G   + +D    M+  G++ + + + A
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I+  C+ G V +AE +++++ +  + PD  TYT +I   C+  D  +  ++  +M  +G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             P   TY+ L+NGLC  G++  A  L+  M+  G++P   T    +   C  G  ED  
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 436 KL---QSEKGLVSDYACYTSLVS 455
           +L      KG   +   YT+L+S
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALIS 363


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 213/431 (49%), Gaps = 21/431 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G  ++A  +  +L   G        +AL++ Y   G L  A   F ++       P  
Sbjct: 80  KEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM-------PLM 132

Query: 96  GCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
           GC+        LI  +         L  +L +   G SP+V  F  L+  LCK G++ DA
Sbjct: 133 GCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDA 192

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
           +++FD   + G+  + +++N +I G+ K   +++  ++K +ME +G  PD +TY+ LI G
Sbjct: 193 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYG 252

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           LC + + ++AE LL+   + G TP  V FT LI+G+C      MA    +A ++ ++M +
Sbjct: 253 LC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYC------MAEKFDDALRMKNKMMS 305

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
           +    D   +  L++   K+  L+ A ++  E+   G+  + + +T++I G+C+ GKV  
Sbjct: 306 SKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 365

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +L+ M + G +P+  TY  ++    K+        LL +M+ DG +P V TY  L+ 
Sbjct: 366 ALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQ 425

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA 448
           G C      NA  L + M   G+ PD+  Y +L +  CK G  E+       KG+     
Sbjct: 426 GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKV 485

Query: 449 CYTSLVSKSSK 459
            YT+L+   SK
Sbjct: 486 YYTTLIDGFSK 496



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 160/307 (52%), Gaps = 10/307 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + +N LM+ L K+ K+  A  +  +  K G+    +++ TL+ G C   + D  
Sbjct: 377 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 436

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +ME +G++PD + Y+ L + LCK  R ++A   +     +G+    V +TTLIDG
Sbjct: 437 FRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDG 493

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G  D A  + E  +++DE CT    PD  TY++LL   CK+  L  AL I  +M  
Sbjct: 494 FSKAGNTDFAATLIE--RMIDEGCT----PDSYTYSVLLHALCKQKRLNEALPILDQMSL 547

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RGI+    A+T LI    R GK   A+RM  EM   G KP   TYT+ I+ +CK G  + 
Sbjct: 548 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 607

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ +M  +G  P V TYN L++G    G +  A   L  M+     P+  TY +LL+
Sbjct: 608 AEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLK 667

Query: 424 GHCKHGN 430
            H   GN
Sbjct: 668 -HLLKGN 673



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 185/384 (48%), Gaps = 40/384 (10%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           ++  +L+ G  P  +  N L+   C+ G+++ A  +F      G      S+  LI G C
Sbjct: 90  YFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLC 149

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            AK + +   L  +M+  G  P+V  ++ LI+GLCK  R+ DA LL   M + G+ P+ +
Sbjct: 150 DAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVM 209

Query: 236 IFTTLIDGHCKNGRIDMAGDMKE----------------------------ARKIVDEMC 267
            +  +I G+ K GR++ A  +KE                            A ++++   
Sbjct: 210 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 269

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G  P  +T+T L++G+C     + AL ++ +M+    +LD   F  LI+   +  ++ 
Sbjct: 270 KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLK 329

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA+ +L E+   GL P+  TYT +ID +CK+G       +LK M  DG  P   TYN+LM
Sbjct: 330 EAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLM 389

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD------KLQSEK 441
            GL K  +L  A  LL  M   G++P+ ITY  LL+G C   +  DFD      ++  + 
Sbjct: 390 YGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQC---DEHDFDNAFRLFEMMEQN 446

Query: 442 GLVSD---YACYTSLVSKSSKYRQ 462
           GL  D   YA  T  + K+ +  +
Sbjct: 447 GLKPDEHAYAVLTDALCKAGRAEE 470



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 165/327 (50%), Gaps = 12/327 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           VF  L++ L K+ ++K+A+ + +E    GL    +++ ++I+G+CK+  +D    +  +M
Sbjct: 314 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 373

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G +P+ +TY++L+ GL K+ +L  A  LL +M + G+ PN + +TTL+ G C     
Sbjct: 374 ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH-- 431

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               D   A ++ + M  NGL PD+  Y +L D  CK G  E A      ++++G+ L  
Sbjct: 432 ----DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTK 484

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +T LI GF + G    A  ++  M+  G  PD  TY++++   CK         +L +
Sbjct: 485 VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQ 544

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    +  Y  L++ + + G+  +A  + + M   G  P   TY + +  +CK G 
Sbjct: 545 MSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR 604

Query: 431 PEDFDKL---QSEKGLVSDYACYTSLV 454
            ED + L      +G+  D   Y  L+
Sbjct: 605 LEDAEDLILKMEREGVAPDVVTYNILI 631



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 22/326 (6%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++D G +P  Y ++VL+H LCK+ ++ +A  + D+   RG+  T  ++  LI+   +   
Sbjct: 510 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 569

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            D   R+ + M  SG +P   TY+  IN  CKE RL+DAE L+ +M   G+ P+ V +  
Sbjct: 570 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 629

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL----------------D 283
           LIDG    G ID A      +++V   C     P+  TY +LL                 
Sbjct: 630 LIDGCGHMGYIDRA--FSTLKRMVGASC----EPNYWTYCLLLKHLLKGNLAYVRSVDTS 683

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G     +L+    + + M+K G+      +++LI+GFC+ G++ EA  +L  M   GL P
Sbjct: 684 GMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSP 743

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           ++  YT++I C C     +     +  M   G  P +E+Y  L+ GLC  G  +    L 
Sbjct: 744 NEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 803

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHG 429
             +L+LG   D++ + IL +G  K G
Sbjct: 804 CDLLELGYNHDEVAWKILNDGLLKAG 829



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 180/387 (46%), Gaps = 10/387 (2%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           D+    DAIQ  R        +  +     +  + R ++       Y +++  G  P   
Sbjct: 10  DMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTV 69

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +N ++   CKEG +  A   F    + GL     + N L+ G+C+   L +   L  +M
Sbjct: 70  TYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM 129

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
              G + + Y+Y+ LI GLC    +  A +L   M   G +PN   FT LI G CK+GR+
Sbjct: 130 PLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV 189

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              GD   AR + D M  NG+ P  +TY  ++ G+ K G +  AL I++ M K G   D+
Sbjct: 190 ---GD---ARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 243

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +  LI G C   K  EAE +L   +K G  P   T+T +I+ +C         R+  +
Sbjct: 244 WTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNK 302

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M S      ++ +  L+N L K  +LK A  LL+ +   G+VP+ ITY  +++G+CK G 
Sbjct: 303 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 362

Query: 431 PE---DFDKLQSEKGLVSDYACYTSLV 454
            +   +  K+    G   +   Y SL+
Sbjct: 363 VDIALEVLKMMERDGCQPNAWTYNSLM 389



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 145/323 (44%), Gaps = 29/323 (8%)

Query: 91  RIPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++  RG +C       LID M+R          Y E+   G+ PS   + V ++  CKEG
Sbjct: 544 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 603

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +++DA+ +  +  + G+    V++N LI+G      +D  F     M G+   P+ +TY 
Sbjct: 604 RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYC 663

Query: 204 ALINGLCKEN----------------RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            L+  L K N                 LD    LL  M + GL P    +++LI G CK 
Sbjct: 664 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 723

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR++      EA  ++D MC  GL+P++  YT+L+   C     E AL     M + G +
Sbjct: 724 GRLE------EACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQ 777

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
               ++  L+ G C  G   + + +  ++L++G   D+  + ++ D   K G     F++
Sbjct: 778 PQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQM 837

Query: 368 LKEMRSDGHLPAVETYNALMNGL 390
           L  M       + +TY  + N +
Sbjct: 838 LSIMEKRYCCISSQTYALVTNKM 860


>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
          Length = 521

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 196/397 (49%), Gaps = 25/397 (6%)

Query: 47  ASILETRGTHLPGLVLDALMIVYVD----LGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           A +LE      PG V      V VD     G +DDA +    + +H   + A     L+D
Sbjct: 115 AGLLERALGSCPGSVSPFAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLD 174

Query: 103 RMMRTNLPTVTLGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
             +R        G   EIL+     G   +V  + +L+  L     I   + +F+E    
Sbjct: 175 CYVRQK----DDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKAN 230

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            +      +  +IN +C+A N+    ++     G+G+ P+  TY  LI G CK  +++ A
Sbjct: 231 NVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAA 290

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA-RKIVDEM----------- 266
           E+LL +M  +G+  N +IF T+IDG+C+ G +D A  +K A  KI  E+           
Sbjct: 291 EMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACG 350

Query: 267 -CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
            C  G+ P+ +TYT L+   CK+GD+  A  + +EM ++G     + ++ +I G+ + G+
Sbjct: 351 LCRMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGR 410

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + EAER  +EM K G  PD  TY  ++   C NG      +L +EM+  G  P V  Y A
Sbjct: 411 IREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTA 470

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           L++GL K G+ + A  L D ML  G++PDD  Y+ L+
Sbjct: 471 LISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 507



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 185/386 (47%), Gaps = 63/386 (16%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           S S +  +V++  LCK G++ DA+ + D+  + G+   A+ +N+L++ + + K+      
Sbjct: 128 SVSPFAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 187

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +  +ME  G+   V TY+ L++ L     +   E L +EM    +  +  ++T +I+ +C
Sbjct: 188 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYC 247

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA----------- 294
           +      AG+M+ A K++DE   NG+ P++ TY +L+ GFCK G +E+A           
Sbjct: 248 R------AGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQG 301

Query: 295 ------------------------LDIRKEMIKRGIELD-------------------NV 311
                                   L I+  M K G+EL+                    V
Sbjct: 302 VGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYV 361

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +T LIS  C+ G +VEA R+ REM + G  P   TY+++I  + K G  +   R  KEM
Sbjct: 362 TYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEM 421

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G +P V TY +L++G C +G++  A  L + M   G  P+ + Y  L+ G  K G  
Sbjct: 422 EKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRS 481

Query: 432 EDFDKLQSE---KGLVSDYACYTSLV 454
           E   +L  +    GL+ D + Y++LV
Sbjct: 482 EAAFQLYDDMLKAGLIPDDSLYSALV 507



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 145/272 (53%), Gaps = 22/272 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E +  G  P+   + VL+   CK G+++ A+M+  +   +G+    + FNT+I+G+C+  
Sbjct: 261 ECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG 320

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+  ++K+ ME  G+  ++YTY+ L  GLC+                 G+ PN V +T
Sbjct: 321 MVDDALKIKAAMEKIGVELNIYTYNTLACGLCR----------------MGVVPNYVTYT 364

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI  HCK+G      DM EAR++  EM   G  P  +TY++++ G+ K+G +  A   R
Sbjct: 365 TLISIHCKDG------DMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFR 418

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KEM K+G   D   + +L+ G C  GKV  A ++  EM + G +P+   YT +I    K 
Sbjct: 419 KEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKE 478

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           G ++  F+L  +M   G +P    Y+AL+  L
Sbjct: 479 GRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 510



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 35/284 (12%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEM---CERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           P   T+S L   L +  RL DA  LL      C   ++P     + ++DG CK+GR+D  
Sbjct: 95  PRSLTFSLL--SLRRAGRLADAAGLLERALGSCPGSVSP--FAASVVVDGLCKSGRVD-- 148

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               +AR+++D+M  +G++ + + Y  LLD + ++ D     +I + M   GIE     +
Sbjct: 149 ----DARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTY 204

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
           T L+        + + E +  EM    +  D   YT VI+ +C+ G+ +   ++L E   
Sbjct: 205 TILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVG 264

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +G  P   TY  L+ G CK GQ++ A MLL  M   GV  + I +N +++G+C+ G  +D
Sbjct: 265 NGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDD 324

Query: 434 FDKLQS--EK--------------------GLVSDYACYTSLVS 455
             K+++  EK                    G+V +Y  YT+L+S
Sbjct: 325 ALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLIS 368



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 19/236 (8%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK-------- 87
           K G   +A +  + ++ +G  L  ++ + ++  Y   G +DDA++    + K        
Sbjct: 283 KIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIY 342

Query: 88  HYFRIPARGCR--CLIDRMMRTNLPTV---------TLGFYLEILDYGYSPSVYVFNVLM 136
            Y  +    CR   + + +  T L ++             + E+ + G +PSV  ++V++
Sbjct: 343 TYNTLACGLCRMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMI 402

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
           H   K+G+I++A+    E  K+G      ++ +L++GHC    +D   +L   M+  G  
Sbjct: 403 HGYAKKGRIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTE 462

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           P+V  Y+ALI+GL KE R + A  L  +M + GL P+D +++ L+     + R D+
Sbjct: 463 PNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKDV 518


>gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa]
 gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 215/428 (50%), Gaps = 11/428 (2%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT-HLPGLVLDA 64
           +L    +++H LV  + +  A  L+  +++  G+ S   +  ++  + G       V DA
Sbjct: 115 SLEISCSVIHVLVNSRRYDDALSLMGNLMTVNGL-SPLEVLEALNNSYGICESNHAVFDA 173

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+     +G    A +  + L+     +        +  +++ N        Y E++ YG
Sbjct: 174 LVRACTQIGATVGACEVIKKLQIEGCWVTIHAWNNFLSHLIKVNEIHRFWIVYKEMVSYG 233

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           Y  +V  FNV++H LCK+ K+++A  VF    K G+    V+FN +++G CK  ++D   
Sbjct: 234 YMENVNTFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGACKMGDMDLAL 293

Query: 185 RL---KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +L     +M    ++P+  TY++LI+G CK   +  AE L +EM +  + PN   + T+I
Sbjct: 294 KLVRKMEIMSAGSIKPNSVTYNSLIDGFCKIGGITVAEELRNEMMKIDIEPNVRTYATMI 353

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+ +      AG ++EA ++ DEM   GL P+ + Y  ++     EGD++ A  +  +M
Sbjct: 354 EGYSR------AGCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDM 407

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             + I LD    + L  G CR G +  A + L ++L+  L  D  ++ ++I+  CK+ + 
Sbjct: 408 SDKQIPLDKFTCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNF 467

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               +LL  M   G +P V T+  L++G CK G +++A  + D M+     P+ + YN +
Sbjct: 468 AAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSI 527

Query: 422 LEGHCKHG 429
           + G CK G
Sbjct: 528 INGLCKDG 535



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 177/375 (47%), Gaps = 48/375 (12%)

Query: 108 NLPTVTLGFYLEILD-----YGYSPSVY-VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           NL TV     LE+L+     YG   S + VF+ L+    + G    A  V  +    G  
Sbjct: 141 NLMTVNGLSPLEVLEALNNSYGICESNHAVFDALVRACTQIGATVGACEVIKKLQIEGCW 200

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            T  ++N  ++   K   +   + +   M   G   +V T++ +++ LCK+ +L +A  +
Sbjct: 201 VTIHAWNNFLSHLIKVNEIHRFWIVYKEMVSYGYMENVNTFNVVVHALCKDCKLQEALSV 260

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
            + + + G+ PN V F  ++DG CK G +D+A  +K  RK+ + M    + P+ +TY  L
Sbjct: 261 FYRILKSGIWPNVVTFNMMVDGACKMGDMDLA--LKLVRKM-EIMSAGSIKPNSVTYNSL 317

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DGFCK G +  A ++R EM+K  IE +   +  +I G+ R G + EA R+  EM++ GL
Sbjct: 318 IDGFCKIGGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRAGCLEEALRLCDEMVERGL 377

Query: 342 KPDDATYTMV--------------------------IDCF---------CKNGDTKTGFR 366
            P+   Y  +                          +D F         C+NG   T  +
Sbjct: 378 LPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSILTRGLCRNGYITTALK 437

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L ++  +  +    ++N L+N LCK      A  LL  M   G+VPD +T+  L++GHC
Sbjct: 438 FLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGHC 497

Query: 427 KHGNPED----FDKL 437
           K GN E     +DK+
Sbjct: 498 KEGNIESAVQVYDKM 512



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 149/300 (49%), Gaps = 7/300 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G  P+  V+N +MH L  EG +  A +VF +   + +     + + L  G C+  
Sbjct: 371 EMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSILTRGLCRNG 430

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +    +  + +  + +  D ++++ LIN LCK N    A  LL  M  RGL P+ V F 
Sbjct: 431 YITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRGLVPDVVTFG 490

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLIDGHCK G I+       A ++ D+M      P+ + Y  +++G CK+G ++ A  + 
Sbjct: 491 TLIDGHCKEGNIE------SAVQVYDKMVKGEEKPNLLVYNSIINGLCKDGLVDVARSLV 544

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             + + G+ +D + +  LI+G+   GK  +A ++   M   G+    ATY  VI   CK 
Sbjct: 545 DVLQRMGL-VDTITYNTLINGYFNCGKFDKAFKLSTLMQNAGILASSATYNTVIKFLCKF 603

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    L+  M   G LP   TY  L+  + K+   +    L D M+  GVVPD +TY
Sbjct: 604 GCVQEAKELMTMMVLWGVLPDNITYRTLVININKNCSAEEVIELHDYMVLKGVVPDKLTY 663



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 7/301 (2%)

Query: 53  RGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           RG     +V +++M      G +D A   F  +      +    C  L   + R    T 
Sbjct: 375 RGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSILTRGLCRNGYITT 434

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F  ++L+       +  N+L++ LCK      A+ +      RGL    V+F TLI+
Sbjct: 435 ALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLID 494

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           GHCK  N++   ++   M     +P++  Y+++INGLCK+  +D A  L+  +   GL  
Sbjct: 495 GHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSIINGLCKDGLVDVARSLVDVLQRMGLV- 553

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + + + TLI+G+   G+ D      +A K+   M   G+     TY  ++   CK G ++
Sbjct: 554 DTITYNTLINGYFNCGKFD------KAFKLSTLMQNAGILASSATYNTVIKFLCKFGCVQ 607

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A ++   M+  G+  DN+ +  L+    +     E   +   M+  G+ PD  TY  ++
Sbjct: 608 EAKELMTMMVLWGVLPDNITYRTLVININKNCSAEEVIELHDYMVLKGVVPDKLTYENIV 667

Query: 353 D 353
            
Sbjct: 668 S 668



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 10/168 (5%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++ V+N +++ LCK+G +  A+ + D   + GL  T +++NTLING+      D+ F+L
Sbjct: 519 PNLLVYNSIINGLCKDGLVDVARSLVDVLQRMGLVDT-ITYNTLINGYFNCGKFDKAFKL 577

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            ++M+ +G+     TY+ +I  LCK   + +A+ L+  M   G+ P+++ + TL+    K
Sbjct: 578 STLMQNAGILASSATYNTVIKFLCKFGCVQEAKELMTMMVLWGVLPDNITYRTLVININK 637

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           N   +      E  ++ D M   G+ PDK+TY  ++    +E   ESA
Sbjct: 638 NCSAE------EVIELHDYMVLKGVVPDKLTYENIVSPLLQE---ESA 676


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 164/303 (54%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  FN+LM  LCK GKIK+A+ VFD    +G +    S+N ++NG+     L +   L
Sbjct: 322 PDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 381

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G+ P + T++ LI        LD A ++ +EM + G+ PN + +TT+I   C+
Sbjct: 382 FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCR 441

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+
Sbjct: 442 IGKMD------DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 495

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V F+++I+  C+ G+V++A+ +    + VGL P    Y+M++D +C  G  +   R
Sbjct: 496 HLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALR 555

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M S G  P    Y  L+NG CK G++     L   ML  G+ P  I YNI+++G  
Sbjct: 556 VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 615

Query: 427 KHG 429
           + G
Sbjct: 616 EAG 618



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 173/343 (50%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT--AVSFNTLINGHCKAKN 179
           + G  P V+ +++L+  LC +GK   A  +     + G   +   V++NT+I+G  K  +
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGD 234

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD  TYS++++ LCK   +D AE  L +M  +G+ PN+  +  
Sbjct: 235 VNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNN 294

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM    + PD +T+ +L+   CK G ++ A D+  
Sbjct: 295 LIYGYSSTGQ------WKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFD 348

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D  ++  +++G+   G +V+   +   ML  G+ P   T+ ++I  +   G
Sbjct: 349 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCG 408

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GV PD   Y+
Sbjct: 409 MLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L SE    G+  D   ++S+++   K
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCK 511



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 5/275 (1%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R D+   + L+ G C+  R 
Sbjct: 103 GPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRT 162

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   ++ L+   C  G+   A D+         +C+    PD
Sbjct: 163 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS----PD 218

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  ++DGF KEGD+  A D+ KEM++RGI  D V +++++   C+   + +AE  LR
Sbjct: 219 VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLR 278

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+  G+ P++ TY  +I  +   G  K   R+ KEMR    LP V T+N LM  LCK+G
Sbjct: 279 QMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYG 338

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           ++K A  + DTM   G  PD  +YNI+L G+   G
Sbjct: 339 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 373



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 172/322 (53%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D+G  P+V  +  ++  LC+ GK+ DA   F++   +G+     +++ LI G C   
Sbjct: 419 EMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 478

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L +   L S +  +GM  D+  +S++IN LCK  R+ DA+ +       GL P  V+++
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYS 538

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+DG+C      + G M++A ++ D M + G+ P+ + Y  L++G+CK G ++  L + 
Sbjct: 539 MLMDGYC------LVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLF 592

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +EM+++GI+   + +  +I G    G+ V A+    EM + G+  +  TY++V+    KN
Sbjct: 593 REMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKN 652

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L KE+R+      + T N ++ G+ +  +++ A  L  ++   G+VP  +TY
Sbjct: 653 RCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTY 712

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
           +I++    K G  E+ + + S 
Sbjct: 713 SIMITNLIKEGLVEEAEDMFSS 734



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 165/335 (49%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P +  FNVL+      G +  A ++F+E    G+    +++ T+I   C+   +D+ 
Sbjct: 389 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDA 448

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
               + M   G+ PD Y Y  LI G C    L  A+ L+ E+   G+  + V+F+++I+ 
Sbjct: 449 MEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINN 508

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR+       +A+ I D     GL+P  + Y++L+DG+C  G +E AL +   M+ 
Sbjct: 509 LCKLGRV------MDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS 562

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GIE ++V +  L++G+C+ G++ E   + REML+ G+KP    Y ++ID   + G T  
Sbjct: 563 AGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVP 622

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                 EM   G      TY+ ++ GL K+     A  L   +  + V  D IT N ++ 
Sbjct: 623 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 682

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G  +    E+   L    S  GLV     Y+ +++
Sbjct: 683 GMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMIT 717



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 179/373 (47%), Gaps = 46/373 (12%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +N ++    KEG +  A  +F E  +RG+    V+++++++  CKA+ +D+   
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G+ P+ +TY+ LI G     +  +A  +  EM  + + P+ V F  L+   C
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLC 335

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG---------------- 289
           K G+I      KEAR + D M   G NPD  +Y I+L+G+  +G                
Sbjct: 336 KYGKI------KEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG 389

Query: 290 -------------------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                               L+ A+ I  EM   G++ + + +T +I+  CR GK+ +A 
Sbjct: 390 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAM 449

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
               +M+  G+ PD   Y  +I  FC +G       L+ E+ ++G    +  +++++N L
Sbjct: 450 EKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNL 509

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           CK G++ +A  + D  +++G+ P  + Y++L++G+C  G  E     FD + S  G+  +
Sbjct: 510 CKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPN 568

Query: 447 YACYTSLVSKSSK 459
              Y +LV+   K
Sbjct: 569 DVVYGTLVNGYCK 581



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 167/337 (49%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ + + +LM    +  + + A   F +  + GL    +  N L+ G C+AK  DE   
Sbjct: 108 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALD 167

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++YS L+  LC + +   A+ LL  M E G   +P+ V + T+ID
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVID 227

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  K G ++ A D+        EM   G+ PD +TY+ ++   CK   ++ A    ++M+
Sbjct: 228 GFFKEGDVNKACDL------FKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV 281

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+  +N  +  LI G+   G+  EA R+ +EM +  + PD  T+ M++   CK G  K
Sbjct: 282 NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIK 341

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +YN ++NG    G L +   L D ML  G+ P   T+N+L+
Sbjct: 342 EARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLI 401

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           + +   G  +     F++++ + G+  +   YT++++
Sbjct: 402 KAYANCGMLDKAMIIFNEMR-DHGVKPNVLTYTTVIA 437



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 172/369 (46%), Gaps = 6/369 (1%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           GM   A +  + +   G     L    ++     +G +DDA++ F  +            
Sbjct: 408 GMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
            CLI                 EI++ G    + +F+ +++ LCK G++ DAQ +FD    
Sbjct: 468 HCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVN 527

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
            GLH TAV ++ L++G+C    +++  R+   M  +G+ P+   Y  L+NG CK  R+D+
Sbjct: 528 VGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDE 587

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
              L  EM ++G+ P+ +++  +IDG  + GR         A+    EM  +G+  +K T
Sbjct: 588 GLSLFREMLQKGIKPSTILYNIIIDGLFEAGRT------VPAKVKFHEMTESGIAMNKCT 641

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y+I+L G  K    + A+ + KE+    +++D +    +I+G  +  +V EA+ +   + 
Sbjct: 642 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASIS 701

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + GL P   TY+++I    K G  +    +   M++ G  P     N ++  L K  ++ 
Sbjct: 702 RSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIV 761

Query: 398 NANMLLDTM 406
            A   L  +
Sbjct: 762 RAGAYLSKI 770



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 29/277 (10%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           ++ G  P+  V+++LM   C  GK++ A  VFD     G+    V + TL+NG+CK   +
Sbjct: 526 VNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRI 585

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEG  L   M   G++P    Y+ +I+GL +  R   A++  HEM E G+  N   ++ +
Sbjct: 586 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIV 645

Query: 241 IDGHCKNGRID------------------------MAG-----DMKEARKIVDEMCTNGL 271
           + G  KN   D                        +AG      ++EA+ +   +  +GL
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 705

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  +TY+I++    KEG +E A D+   M   G E D+     ++    +  ++V A  
Sbjct: 706 VPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGA 765

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
            L ++ +     +  T  +++D F   G  +   R L
Sbjct: 766 YLSKIDERNFSLEHLTTMLLVDLFSSKGTCREHIRFL 802


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 177/345 (51%), Gaps = 25/345 (7%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           IL  GY P +  +  L+  LC E +I  A ++F    K G    A+++ TL+ G C+  N
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGN 216

Query: 180 LDEGFRLK------SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +    +L       S + G   +P V +YS +I+ LCK+ R D+A  L  EM  +G+TP 
Sbjct: 217 ISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPT 276

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + +T+L+               +EA+++ +EM   G+ P+ +T+ +L+D  CKEG +  
Sbjct: 277 VISYTSLM--------------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIE 322

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A D+ + MI+RGI  + + + +LI GFC  G +  A  +   M   G +PD   YT++I+
Sbjct: 323 AKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLIN 382

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +CK    +   +L   M   G  P V+TY AL+ GL + G++ +A  L   M   G+  
Sbjct: 383 GYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPG 442

Query: 414 DDITYNILLEGHCKHG----NPEDFDKLQSEKGLVSDYACYTSLV 454
           D   Y I L G CK+G      E F+KL+S   +  D  C+  L+
Sbjct: 443 DLYIYGIFLNGLCKNGCLFEAMELFNKLKS-YNIKLDIECFNCLI 486



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 199/365 (54%), Gaps = 25/365 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILD----YG--YSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
           L+  + RT   ++ L  + E+L+    YG  + P V  +++++  LCK+ +  +A+ +F+
Sbjct: 207 LMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFE 266

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E   +G+  T +S+ +L+         +E  RL + M   G++P+V T++ LI+ LCKE 
Sbjct: 267 EMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEG 318

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           ++ +A+ LL  M +RG+ PN + + +LI+G C      + GD+  AR++   M + G  P
Sbjct: 319 KVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC------LVGDLNSARELFVSMPSKGCEP 372

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D I YT+L++G+CK   +E A+ +   M++ G   D   + AL++G  +GGKV +A+++ 
Sbjct: 373 DVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLF 432

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M   G+  D   Y + ++  CKNG       L  +++S      +E +N L++GLCK 
Sbjct: 433 GVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKA 492

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           G+L+ A  L + +    + PD +TYNI++   C+ G        F K++ + G   D   
Sbjct: 493 GKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKME-KNGCTPDKIT 551

Query: 450 YTSLV 454
           Y +L+
Sbjct: 552 YATLI 556



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 173/339 (51%), Gaps = 18/339 (5%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK---RGLHATAVSFNTLINGHCKAKNLD 181
           YS      +   H L    KIK    VF  + +    G+     + N L+N  C    + 
Sbjct: 89  YSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVG 148

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EG  + + +   G  PD+ TY+ LI GLC E+R+  A LL   M + G TPN + + TL+
Sbjct: 149 EGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLM 208

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLESALDIRK 299
            G C+ G I +A  +K  ++++++    G+N  P  I+Y+I++D  CK+   + A D+ +
Sbjct: 209 KGLCRTGNISIA--LKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFE 266

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  +G+    +++T+L+          EA+R+  EM+  G++P+  T+ ++ID  CK G
Sbjct: 267 EMKVQGMTPTVISYTSLMWE--------EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEG 318

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  LL+ M   G +P + TYN+L+ G C  G L +A  L  +M   G  PD I Y 
Sbjct: 319 KVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYT 378

Query: 420 ILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           +L+ G+CK    E+  KL +   + G   D   Y +L++
Sbjct: 379 VLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLT 417



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 154/296 (52%), Gaps = 6/296 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+++ G  P+V  FNVL+  LCKEGK+ +A+ + +   +RG+    +++N+LI G C   
Sbjct: 294 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 353

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    L   M   G  PDV  Y+ LING CK +++++A  L + M + G  P+   + 
Sbjct: 354 DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYG 413

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+ G  + G++   GD   A+K+   M   G+  D   Y I L+G CK G L  A+++ 
Sbjct: 414 ALLTGLFQGGKV---GD---AKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELF 467

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++    I+LD   F  LI G C+ GK+  A  +  ++ +  L+PD  TY ++I  FC+ 
Sbjct: 468 NKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRG 527

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           G       L ++M  +G  P   TY  L+ G  +  +L+    LL  M+   V  D
Sbjct: 528 GQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLD 583



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 61/127 (48%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G L +A++ F  L+ +  ++      CLID + +          + ++      P V  +
Sbjct: 458 GCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTY 517

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N+++H+ C+ G++  A ++F +  K G     +++ TLI G  ++K L++   L  +M  
Sbjct: 518 NIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 577

Query: 193 SGMRPDV 199
             +  DV
Sbjct: 578 RDVSLDV 584



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 311 VAFTALISGF---CRGGKV--VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           ++F   +S F   C+ G +  ++A +    M+     P  +++T ++    K       F
Sbjct: 57  ISFQQQLSMFLHNCKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVF 116

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L  +MR  G  P   T N L+N LC   ++     ++  +L  G +PD +TY  L++G 
Sbjct: 117 YLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGL 176

Query: 426 C 426
           C
Sbjct: 177 C 177


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 193/396 (48%), Gaps = 67/396 (16%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  + +NV++  L + GK  DA  VFDE   RG+    +++NT+I+GH K  +L+ GFRL
Sbjct: 193 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRL 252

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M   G +P+V TY+ L++GLC+  R+D+   L+ EM    + P+   ++ L DG  +
Sbjct: 253 RDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTR 312

Query: 247 NG--RIDMA---------------------------GDMKEARKIVDEMCTNGLNPDKIT 277
            G  R  ++                           G + +A ++++ +   GL P    
Sbjct: 313 TGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAI 372

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++G+C+  DL+ A  I ++M  R I  D++ + ALI+G C+   + EAE ++ EM 
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME 432

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           K G+ P   T+  +ID + + G  +  F +L +M+  G    V ++ +++   CK+G++ 
Sbjct: 433 KSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIP 492

Query: 398 NANMLLDTMLDLGVVPDD-----------------------------------ITYNILL 422
            A  +LD M+   VVP+                                     TYN+LL
Sbjct: 493 EAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLL 552

Query: 423 EGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           +G CK+   ++ ++L    + +GL  D   Y +++S
Sbjct: 553 KGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIIS 588



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 178/383 (46%), Gaps = 32/383 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L D + RT      L  + E L  G     Y  ++L++ LCK+GK+  A+ V +     G
Sbjct: 306 LFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTG 365

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T   +NTLING+C+ ++L   F +   M+   +RPD  TY+ALINGLCK   + +AE
Sbjct: 366 LVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAE 425

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRI--------DMA------------------ 253
            L+ EM + G+ P+   F TLID + + G++        DM                   
Sbjct: 426 DLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAF 485

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G + EA  I+D+M    + P+   Y  ++D + + G  E A  + ++M   G+    
Sbjct: 486 CKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASI 545

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +  L+ G C+  ++ EAE ++  +   GL+PD  +Y  +I   C  GDT     LL+E
Sbjct: 546 FTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQE 605

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M      P + TY+ L++ L   G++ +   L   M+   V P    Y    E   K  +
Sbjct: 606 MHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVAS 665

Query: 431 PEDFDKLQSEKGLVSDYACYTSL 453
                K  SEKG+  D    T+L
Sbjct: 666 ---LKKEMSEKGIAFDDTERTNL 685



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 198/427 (46%), Gaps = 66/427 (15%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           V  G LD+A+   R + +     P  A     +I  + R+   +  L  + E++D G +P
Sbjct: 169 VAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAP 228

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +   +N ++    K G ++    + D+  + G     V++N L++G C+A  +DE   L 
Sbjct: 229 NQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALM 288

Query: 188 SVMEGSGMRPDVYTYSAL-----------------------------------INGLCKE 212
             M    M PD +TYS L                                   +NGLCK+
Sbjct: 289 DEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKD 348

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK----NGRIDMAGDMK----------- 257
            ++  AE +L  +   GL P   I+ TLI+G+C+     G   +   MK           
Sbjct: 349 GKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITY 408

Query: 258 --------------EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                         EA  +V EM  +G++P   T+  L+D + + G LE    +  +M  
Sbjct: 409 NALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQD 468

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +GI+ + ++F +++  FC+ GK+ EA  +L +M+   + P+   Y  +ID + ++G T+ 
Sbjct: 469 KGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQ 528

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            F L+++M+S G   ++ TYN L+ GLCK+ Q+  A  L+  + + G+ PD ++YN ++ 
Sbjct: 529 AFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIIS 588

Query: 424 GHCKHGN 430
             C  G+
Sbjct: 589 ACCNKGD 595



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 177/363 (48%), Gaps = 36/363 (9%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+   N+L+  L   G+  D +  F      G      ++N  +     A +LDE   +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 187 KSVM---EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
              M   EG+   PD ++Y+ +I GL +  +  DA  +  EM +RG+ PN + + T+IDG
Sbjct: 181 LRRMGRSEGAP-PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDG 239

Query: 244 HCKNGRIDM-----------------------------AGDMKEARKIVDEMCTNGLNPD 274
           H K G ++                              AG M E R ++DEM +  + PD
Sbjct: 240 HVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPD 299

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+IL DG  + GD  + L +  E +K+G+ +     + L++G C+ GKV +AE++L 
Sbjct: 300 GFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLE 359

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            ++  GL P  A Y  +I+ +C+  D +  F + ++M+S    P   TYNAL+NGLCK  
Sbjct: 360 MLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKME 419

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKLQ--SEKGLVSDYACYT 451
            +  A  L+  M   GV P   T+N L++ + + G  E  F  L    +KG+ S+   + 
Sbjct: 420 MITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFG 479

Query: 452 SLV 454
           S+V
Sbjct: 480 SVV 482



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 142/270 (52%), Gaps = 13/270 (4%)

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEM--CERGLTPNDVIFTTLIDGHCKNGR 249
            +G RPD + ++  +        LD+A  +L  M   E    P+   +  +I G  ++G+
Sbjct: 151 AAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGK 210

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +A K+ DEM   G+ P++ITY  ++DG  K GDLE+   +R +M++ G + +
Sbjct: 211 ------GSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPN 264

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  L+SG CR G++ E   ++ EM    + PD  TY+++ D   + GD++T   L  
Sbjct: 265 VVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFG 324

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK-- 427
           E    G +    T + L+NGLCK G++  A  +L+ ++  G+VP    YN L+ G+C+  
Sbjct: 325 ESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVR 384

Query: 428 --HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
              G    F++++S + +  D+  Y +L++
Sbjct: 385 DLQGAFSIFEQMKS-RHIRPDHITYNALIN 413



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 143/315 (45%), Gaps = 12/315 (3%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           + + L+  Y  +  L  A   F  ++  + R        LI+ + +  + T      +E+
Sbjct: 372 IYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEM 431

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
              G  PSV  FN L+    + G+++    V  +   +G+ +  +SF +++   CK   +
Sbjct: 432 EKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKI 491

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   +   M    + P+   Y+++I+   +    + A LL+ +M   G++ +   +  L
Sbjct: 492 PEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLL 551

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           + G CKN +ID      EA +++  +   GL PD ++Y  ++   C +GD + AL++ +E
Sbjct: 552 LKGLCKNSQID------EAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQE 605

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M K  I      +  L+S     G+V + E + + M+   ++P  + Y       C+N +
Sbjct: 606 MHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIY----GTRCEN-E 660

Query: 361 TKTGFRLLKEMRSDG 375
           +K    L KEM   G
Sbjct: 661 SKVA-SLKKEMSEKG 674


>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
          Length = 561

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 189/367 (51%), Gaps = 13/367 (3%)

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
            C   IDR+ +          +  + D G  P+   + +L+H LCK G ++DA  +FD  
Sbjct: 53  ACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRM 112

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            ++G+  T   +N+LING+CK  N  +   L + M   G+ P   +YS LI GLC++  L
Sbjct: 113 REKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDL 172

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
             A  L  EM    ++ N   FT LI G CK+G +D      EA ++  +M  + L P++
Sbjct: 173 ASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMD------EATRLFHKMMESSLVPNE 226

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +T+ ++++G+C+ G++  A  +  +M+ RG+  DN  + +LIS  C     ++A+  + +
Sbjct: 227 VTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVAD 286

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +       +  + T ++  FCK G  +    L KEM +   LP   TYN  ++ L   G+
Sbjct: 287 LENNCAVLNSFSLTALMHGFCKEGSAEI---LCKEMLAGHFLPNSYTYNCFLDYLANEGE 343

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTS 452
           L+ A +L   ML+ G + + +T+N L++G C  G  +   D  +  +E G   D   Y++
Sbjct: 344 LEKAKVLHAAMLE-GCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYST 402

Query: 453 LVSKSSK 459
           ++++  K
Sbjct: 403 IINELCK 409



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 151/277 (54%), Gaps = 8/277 (2%)

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K G+ A  ++ N  I+   K     E  +L   M   G+ P+  TY+ LI+ LCK   ++
Sbjct: 44  KLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMME 103

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           DA  +   M E+G+      + +LI+G+CK+       +  +AR +++EM   GL P   
Sbjct: 104 DALCMFDRMREKGIRMTVYPYNSLINGYCKH------NNFHQARGLLNEMVAKGLTPSPA 157

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           +Y+ L+ G C++GDL SA+++ +EM +  +  +   FTALISGFC+ G + EA R+  +M
Sbjct: 158 SYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKM 217

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC-KHGQ 395
           ++  L P++ T+ ++I+ +C+ G+ +  F+L  +M   G  P   TY +L++ +C   G 
Sbjct: 218 MESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGA 277

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +K    + D   +  V+ +  +   L+ G CK G+ E
Sbjct: 278 MKAKEFVADLENNCAVL-NSFSLTALMHGFCKEGSAE 313



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 9/238 (3%)

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           L  + C+ G+  N +     ID   K+GR       +EA K+   M   GL+P+++TY I
Sbjct: 38  LTGQNCKLGIVANLLACNAWIDRLGKDGR------YREAEKLFRGMADRGLDPNEVTYAI 91

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L+   CK G +E AL +   M ++GI +    + +LI+G+C+     +A  +L EM+  G
Sbjct: 92  LIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKG 151

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L P  A+Y+ +I   C+ GD  +   L +EM  +     V T+ AL++G CK G +  A 
Sbjct: 152 LTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEAT 211

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            L   M++  +VP+++T+N+++EG+C+ GN     +L  +   +GL  D   Y SL+S
Sbjct: 212 RLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLIS 269



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 167/376 (44%), Gaps = 30/376 (7%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G ++DA+  F  +R+   R+       LI+   + N      G   E++  G +PS   +
Sbjct: 100 GMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASY 159

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L+  LC++G +  A  +  E  +  +     +F  LI+G CK  N+DE  RL   M  
Sbjct: 160 SPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMME 219

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC------- 245
           S + P+  T++ +I G C+   +  A  L  +M +RGLTP++  + +LI   C       
Sbjct: 220 SSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMK 279

Query: 246 -KNGRID----------------MAGDMKE--ARKIVDEMCTNGLNPDKITYTILLDGFC 286
            K    D                M G  KE  A  +  EM      P+  TY   LD   
Sbjct: 280 AKEFVADLENNCAVLNSFSLTALMHGFCKEGSAEILCKEMLAGHFLPNSYTYNCFLDYLA 339

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
            EG+LE A  +   M++ G   + V F  LI GFC  G++  A  ++++  + G  PD  
Sbjct: 340 NEGELEKAKVLHAAMLE-GCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCI 398

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL-KNANMLLDT 405
           +Y+ +I+  CK GDT   F L  EM   G  P +  Y  L+     HG+  K   +  D 
Sbjct: 399 SYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTILIRWCNIHGEFDKGLGIYSDM 458

Query: 406 MLDLGVVPDDITYNIL 421
           +  L   P+   YNI+
Sbjct: 459 VTVLPEYPE--VYNIV 472



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 6/248 (2%)

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++ + FRL       G+  ++   +A I+ L K+ R  +AE L   M +RGL PN+V + 
Sbjct: 31  HIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTYA 90

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   CK G       M++A  + D M   G+      Y  L++G+CK  +   A  + 
Sbjct: 91  ILIHSLCKRGM------MEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLL 144

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            EM+ +G+     +++ LI+G CR G +  A  + REM +  +  +  T+T +I  FCK+
Sbjct: 145 NEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKD 204

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G+     RL  +M     +P   T+N ++ G C+ G ++ A  L D MLD G+ PD+ TY
Sbjct: 205 GNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTY 264

Query: 419 NILLEGHC 426
             L+   C
Sbjct: 265 RSLISVVC 272



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
            K  +   L G    G +  +  +  +  K GI  + +A  A I    + G+  EAE++ 
Sbjct: 15  QKHNWAWKLRGKRMSGHIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLF 74

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R M   GL P++ TY ++I   CK G  +    +   MR  G    V  YN+L+NG CKH
Sbjct: 75  RGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKH 134

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
                A  LL+ M+  G+ P   +Y+ L+ G C+ G+     +L  E     +  +   +
Sbjct: 135 NNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTF 194

Query: 451 TSLVS 455
           T+L+S
Sbjct: 195 TALIS 199



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 3/206 (1%)

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           M+G + ++ ++  + C  G+  + +     +D   K+G    A  + + M  RG++ + V
Sbjct: 28  MSGHIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEV 87

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI   C+ G + +A  M   M + G++     Y  +I+ +CK+ +      LL EM
Sbjct: 88  TYAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEM 147

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
            + G  P+  +Y+ L+ GLC+ G L +A  L   M    V  +  T+  L+ G CK GN 
Sbjct: 148 VAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNM 207

Query: 432 EDFDKL---QSEKGLVSDYACYTSLV 454
           ++  +L     E  LV +   +  ++
Sbjct: 208 DEATRLFHKMMESSLVPNEVTFNVMI 233


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 190/388 (48%), Gaps = 34/388 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            ID + +      +LG   E++  G +  + ++  +M +L KEGKI++A+ V        
Sbjct: 335 FIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDN 394

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    V++  L++ HC+A N+D   ++   ME   + P+V T+S+++NGL K   +  A 
Sbjct: 395 ITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAA 454

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCK------------------------------NGR 249
             + +M + G+ PN V + TLIDG  K                              NG 
Sbjct: 455 GYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNG- 513

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +   G+++EA  +  +M   GL  D + Y  L+DG  K G++ +AL + +E+++R +  D
Sbjct: 514 LRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPD 573

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +   I+  CR GK  EA+  L+EM   GL+PD ATY  +I   C+ G+T    +LL 
Sbjct: 574 AVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLN 633

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM+     P + TY  L+ GL + G ++ A  LL+ M   G  P  +TY  +L+      
Sbjct: 634 EMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSR 693

Query: 430 NPE---DFDKLQSEKGLVSDYACYTSLV 454
           +P    +  +L    GL +D   Y +LV
Sbjct: 694 SPYVILEVHELMMGAGLHADITVYNTLV 721



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 176/362 (48%), Gaps = 33/362 (9%)

Query: 100 LIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           L+D + +T N+P   L    E+++   SP   V+NV ++ LC+ GK  +A+    E    
Sbjct: 545 LMDGLFKTGNMPA-ALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNT 603

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           GL     ++NT+I+  C+  N  +  +L + M+ S ++P++ TY+ L+ GL +   ++ A
Sbjct: 604 GLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKA 663

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------------------- 253
           + LL+EM   G TP  + +  ++   C   R                             
Sbjct: 664 KYLLNEMASAGFTPTPLTYRRVLQA-CSGSRSPYVILEVHELMMGAGLHADITVYNTLVH 722

Query: 254 -----GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                G  ++A  ++DEM   G+ PD IT+  L+ G CK   L++A     +M+ +G+  
Sbjct: 723 VLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSP 782

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   F  L+ G    G++ EA+ ++ EM K+GL+P++ TY +++  + K  +     RL 
Sbjct: 783 NIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLY 842

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM S G +P   TYN+L++   K G +  A  L   M   GV+    TY+ILL G  K 
Sbjct: 843 CEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKL 902

Query: 429 GN 430
            N
Sbjct: 903 RN 904



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 202/427 (47%), Gaps = 13/427 (3%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF--R 91
           +S++G G  A    S +  RG    G+ +   ++     G + +A     +L +      
Sbjct: 127 LSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAALAEMLVRGRGIDG 186

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           +   G   LID   +       L     +   G S  V  +N L+      G    A  V
Sbjct: 187 LGVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEV 246

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            +     G+  + V+  TLI  +CK K ++E F L   M  SG+ PDV T SAL++GLC+
Sbjct: 247 AERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCR 306

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
           + R  +A  L  EM + G+ PN V + T ID   K  R++      E+  ++ EM + G+
Sbjct: 307 DGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVN------ESLGLLGEMVSRGV 360

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             D + YT ++D   KEG +E A D+ +  +   I  + V +T L+   CR G +  AE+
Sbjct: 361 AMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQ 420

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           ML +M +  + P+  T++ +++   K G        +++M+  G  P V TY  L++G  
Sbjct: 421 MLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFF 480

Query: 392 K-HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDY 447
           K  GQ    ++  D ML  GV  ++   + L+ G  K+GN E+ + L     E+GL+ D+
Sbjct: 481 KCQGQEAALDVYRD-MLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDH 539

Query: 448 ACYTSLV 454
             Y +L+
Sbjct: 540 VNYATLM 546



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 185/398 (46%), Gaps = 44/398 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       L  Y ++L  G   + ++ + L++ L K G I++A+ +F + G+RG
Sbjct: 475 LIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERG 534

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V++ TL++G  K  N+    ++   +    + PD   Y+  IN LC+  +  +A+
Sbjct: 535 LLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAK 594

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
             L EM   GL P+   + T+I   C+ G      +  +A K+++EM  + + P+ ITYT
Sbjct: 595 SFLKEMRNTGLEPDQATYNTMISAQCREG------NTSKALKLLNEMKWSSIKPNLITYT 648

Query: 280 ILLDGFCKEGDLESA-----------------------------------LDIRKEMIKR 304
            L+ G  + G +E A                                   L++ + M+  
Sbjct: 649 TLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGA 708

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G+  D   +  L+   C  G   +A  +L EML  G+ PD  T+  +I   CK+      
Sbjct: 709 GLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNA 768

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F    +M   G  P + T+N L+ GL   G++  A+ ++  M  +G+ P+++TY+IL+ G
Sbjct: 769 FATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTG 828

Query: 425 HCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           + K  N  +  +L  E   KG +   + Y SL+S  +K
Sbjct: 829 YAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAK 866



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 166/343 (48%), Gaps = 9/343 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G+  ++ D G +P+V  +  L+    K    + A  V+ +    G+ A     ++L+NG 
Sbjct: 455 GYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGL 514

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            K  N++E   L   M   G+  D   Y+ L++GL K   +  A  +  E+ ER L+P+ 
Sbjct: 515 RKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDA 574

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V++   I+  C+ G+        EA+  + EM   GL PD+ TY  ++   C+EG+   A
Sbjct: 575 VVYNVFINCLCRLGKFS------EAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKA 628

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L +  EM    I+ + + +T L+ G    G V +A+ +L EM   G  P   TY  V+  
Sbjct: 629 LKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQA 688

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
              +        + + M   G    +  YN L++ LC HG  + A ++LD ML  G+ PD
Sbjct: 689 CSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPD 748

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            IT+N L+ GHCK  + ++     ++   +GL  + A + +L+
Sbjct: 749 TITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLL 791



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 172/346 (49%), Gaps = 20/346 (5%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM- 190
           +N+ +  L ++G  + A  V  E  KRG+    V+ +T + G  +   + E   L  ++ 
Sbjct: 120 YNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAALAEMLV 179

Query: 191 EGSGMRP-DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
            G G+    V  ++ALI+G CK   +  A  ++  M  +GL+ + V + TL+ G      
Sbjct: 180 RGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFF---- 235

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
              +GD   A ++ + M  +G+ P  +T+T L+  +CK   +E A  + + M++ G+  D
Sbjct: 236 --YSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPD 293

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V  +AL+ G CR G+  EA  + REM K+G+ P+  TY   ID   K         LL 
Sbjct: 294 VVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLG 353

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM S G    +  Y  +M+ L K G+++ A  +L   L   + P+ +TY +L++ HC+ G
Sbjct: 354 EMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAG 413

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSL---------VSKSSKYRQK 463
           N +  +++     EK +  +   ++S+         ++K++ Y +K
Sbjct: 414 NIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRK 459



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 135/262 (51%), Gaps = 6/262 (2%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P V L  +  ++  G    + V+N L+H LC  G  + A +V DE   RG+    ++FN 
Sbjct: 695 PYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNA 754

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI GHCK+ +LD  F   + M   G+ P++ T++ L+ GL    R+ +A+ ++ EM + G
Sbjct: 755 LILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMG 814

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           L PN++ +  L+ G+ K        +  EA ++  EM + G  P   TY  L+  F K G
Sbjct: 815 LEPNNLTYDILVTGYAKK------SNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAG 868

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            +  A ++  EM +RG+   +  +  L++G+ +     E   +L++M ++G KP   T +
Sbjct: 869 MMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTIS 928

Query: 350 MVIDCFCKNGDTKTGFRLLKEM 371
            +   F K G T    RLLK +
Sbjct: 929 SMSRAFSKPGMTWEARRLLKTL 950



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 19/340 (5%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P   +   L+  L   G +  A         R +    ++ N++I  +C    L     L
Sbjct: 49  PPARLLRRLIPALASSGLVAAASRF------RPVPGDPLTLNSIILSYCSLHALRPALSL 102

Query: 187 KSVMEGSGMRP----DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +   SG +P    D  +Y+  + GL ++     A  +L EMC+RG+  + V  +T + 
Sbjct: 103 --LRSSSGPQPQVAADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALV 160

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  + G +  A  + E   +V     +GL    + +  L+DG+CK  D+ +AL + + M 
Sbjct: 161 GLSRTGLVGEAAALAE--MLVRGRGIDGLG--VVGWNALIDGYCKVQDMAAALAVVERMT 216

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+ LD V +  L++GF   G    A  +   M   G++P   T+T +I  +CK    +
Sbjct: 217 TQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIE 276

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             F L + M   G LP V T +AL++GLC+ G+   A  L   M  +GV P+ +TY   +
Sbjct: 277 EAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFI 336

Query: 423 EGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           +   K     +   L  E   +G+  D   YT+++ +  K
Sbjct: 337 DSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGK 376



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 117/303 (38%), Gaps = 66/303 (21%)

Query: 7   LHA----YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           LHA    Y+T+VH L  H M  +A  +L  ++                  RG     +  
Sbjct: 710 LHADITVYNTLVHVLCCHGMTRKATIVLDEMLG-----------------RGIAPDTITF 752

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL++ +     LD+A                                      Y ++L 
Sbjct: 753 NALILGHCKSSHLDNAFAT-----------------------------------YAQMLH 777

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G SP++  FN L+  L   G+I +A  V  E  K GL    ++++ L+ G+ K  N  E
Sbjct: 778 QGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVE 837

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL   M   G  P   TY++LI+   K   ++ A+ L  EM  RG+      +  L++
Sbjct: 838 ALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLN 897

Query: 243 GHCK--NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           G  K  NG         E R ++ +M   G  P K T + +   F K G    A  + K 
Sbjct: 898 GWSKLRNG--------TEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRLLKT 949

Query: 301 MIK 303
           + K
Sbjct: 950 LFK 952


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 195/400 (48%), Gaps = 30/400 (7%)

Query: 58  PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P +V ++ +M  +  +G +D A   F L+ K+     +     L+  +         LGF
Sbjct: 269 PSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGF 328

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
             ++  +G  P V  +N L       G +  A+ V  +   +GL+   V++ TLI GHC+
Sbjct: 329 TDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQ 388

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             N++E  +L+      G + +V  Y+ L++ LCK  R+++A  L  EM    L P+ ++
Sbjct: 389 MGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIV 448

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           ++ LI G CK G +  A                             G++ EAR   D   
Sbjct: 449 YSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWT 508

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
              L  D + Y I++DG+ +   +  A+ +  +MI+RGI    V F  LI+GFCR G ++
Sbjct: 509 RMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLM 568

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA +ML  +   GL P   TYT +++ +C+ G+ +  F  L EM ++  +P   TY  L+
Sbjct: 569 EARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLI 628

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            GLC+  ++  +  LL+ M   G++PD +TYN +++  CK
Sbjct: 629 KGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 46/380 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-- 176
           E L  G+  +V  +N+L+  LCK G+I++A  +FDE     L    + ++ LI+G CK  
Sbjct: 401 ETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEG 460

Query: 177 ----AKNLDEGFRLK----------SVMEG-------------------SGMRPDVYTYS 203
               A  L E  RLK          +V+ G                     +  DV  Y+
Sbjct: 461 FVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYN 520

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +I+G  + + + +A  L ++M ERG+TP+ V F TLI+G C+ G      D+ EARK++
Sbjct: 521 IMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRG------DLMEARKML 574

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           + +   GL P  +TYT L++ +C+ G+++       EM    +   +V +T LI G CR 
Sbjct: 575 EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            K+ E+ ++L  M   GL PD  TY  +I CFCK  +     +L   M      P   TY
Sbjct: 635 NKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTY 694

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQS 439
             L+N LC  G LK+ + ++ ++ D  +     TY  +++ HC  G        F+++ +
Sbjct: 695 KVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLA 754

Query: 440 EKGLVSDYACYTSLVSKSSK 459
            KG V     Y++++++  K
Sbjct: 755 -KGFVISIRDYSAVINRLCK 773



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 152/320 (47%), Gaps = 9/320 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V ++N+++    +   I +A  ++ +  +RG+  + V+FNTLING C+  +L E  ++  
Sbjct: 516 VVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLE 575

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V+   G+ P V TY+ L+N  C+   + +    LHEM    + P  V +T LI G C+  
Sbjct: 576 VIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQN 635

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +      M E+ ++++ M   GL PD +TY  ++  FCK  ++  AL +   M+    + 
Sbjct: 636 K------MHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDP 689

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V +  LI+  C  G + + +RM+  +    +     TY  +I   C  G         
Sbjct: 690 TQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYF 749

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M + G + ++  Y+A++N LCK G +  A      ML  GV PD      +L    + 
Sbjct: 750 NQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQ 809

Query: 429 GNPE---DFDKLQSEKGLVS 445
           GN     +F  +  + G +S
Sbjct: 810 GNNSSVFEFLAMVVKSGFIS 829



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 155/299 (51%), Gaps = 10/299 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V+++L     +   I DA  V  +       A+  ++N+L++     ++ D  + + + +
Sbjct: 172 VWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLHN---MRHTDIMWDVYNEI 228

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           + SG      T S LI+GLC++++L+DA   LH+   + + P+ V   T++   CK G I
Sbjct: 229 KVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLI 287

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D+A      R     M  NGL  D  +Y ILL G C  G ++ AL    +M K G+E D 
Sbjct: 288 DVA------RSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDV 341

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +  L  GF   G +  A +++++ML  GL PD  TYT +I   C+ G+ +   +L +E
Sbjct: 342 VTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQE 401

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             S G    V  YN L++ LCK G+++ A  L D M  L + PD I Y+IL+ G CK G
Sbjct: 402 TLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEG 460



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 29/307 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID  +R +     +  Y ++++ G +PSV  FN L++  C+ G + +A+ + +    +G
Sbjct: 522 MIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKG 581

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  + V++ TL+N +C+  N+ E F     ME + + P   TY+ LI GLC++N++ ++ 
Sbjct: 582 LVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESL 641

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            LL  M  +GL P+ V + T+I   CK   I  A                          
Sbjct: 642 QLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINAL 701

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              GD+K+  ++V  +    +   K TY  ++   C +G +  AL    +M+ +G  +  
Sbjct: 702 CIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISI 761

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             ++A+I+  C+ G + EA+     ML  G+ PD      V++ F + G+  + F  L  
Sbjct: 762 RDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAM 821

Query: 371 MRSDGHL 377
           +   G +
Sbjct: 822 VVKSGFI 828



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 175/379 (46%), Gaps = 37/379 (9%)

Query: 100 LIDRMMRTNLPTVTLGF-YLEILDYGYSPSVYVFNVLMHKLCKEGKIKD-----AQMVFD 153
           ++DR+ RT  P V + F Y  I +YG+  S++   V+ H L  +G+ K+       ++ D
Sbjct: 88  VLDRL-RTLKPDVAVAFFYFLINEYGFRHSIFSQFVVSHILAGKGRFKELDSVIKNLIVD 146

Query: 154 E-FGK------------RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           +  G             R   +  + ++ L   + + + + +   + + M+    +  V 
Sbjct: 147 QGLGSASIICDLLLEKFRNWDSNGLVWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVP 206

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI-DMAGDMKEA 259
           TY++L++ +   + + D   + +E+   G   ++   + LI G C+  ++ D    + ++
Sbjct: 207 TYNSLLHNMRHTDIMWD---VYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDS 263

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            K+V         P  ++   ++  FCK G ++ A      M+K G+  D+ ++  L+ G
Sbjct: 264 NKVV--------GPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHG 315

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C  G + EA     +M K G++PD  TY  +   F   G      +++++M   G  P 
Sbjct: 316 LCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPD 375

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FD 435
           + TY  L+ G C+ G ++ A  L    L  G   + I YN+LL   CK G  E+    FD
Sbjct: 376 LVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFD 435

Query: 436 KLQSEKGLVSDYACYTSLV 454
           ++++ + L  D+  Y+ L+
Sbjct: 436 EMETLR-LEPDFIVYSILI 453


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 203/458 (44%), Gaps = 104/458 (22%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ---------- 149
           L+  + R  +    +  Y  +L  G  P++ ++N +++ LCK+G + DA+          
Sbjct: 356 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE 415

Query: 150 -------------------------MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
                                     VF++  K G     V+++TLING C +  ++E F
Sbjct: 416 MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAF 475

Query: 185 -----------------------------------RLKSVMEGSGMRPDVYTYSALINGL 209
                                              RL   M+  G  P+VYTY+ALI+GL
Sbjct: 476 DLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGL 535

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------------- 253
           C    L  A  L H M   G+ PN V +  LI+   +N RI  A                
Sbjct: 536 CVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNI 595

Query: 254 -------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
                        GD K+A  +++ M   G + + +TY  ++ G+C  G+  SAL I   
Sbjct: 596 VTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDL 655

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M   G + D  ++T LI GFC+  K+  A  +  EM+  GL P++ TYT +ID +CK+  
Sbjct: 656 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 715

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
             T   LL+ M+  G  P V+TYN L++GL K      A  L   M++ G+ P+ +TY  
Sbjct: 716 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 775

Query: 421 LLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLV 454
           +++G CK+G+     E F+K+  E+G + +   Y+SL+
Sbjct: 776 MIDGLCKNGSTSLALEMFNKM-IEQGCLPNLLTYSSLI 812



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            ++++ + G  P+VY +  L+  LC  G +K A  +F    + G+    V++N LIN   
Sbjct: 512 LFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILV 571

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           + + +   F + ++M  +G+  ++ TY+ +I G C       A L+++ M +RG + N V
Sbjct: 572 ENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLV 631

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T+I G+C       +G+   A +I+D M   G  PD+ +YT L+ GFCK   +ESA 
Sbjct: 632 TYNTIIKGYCD------SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 685

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM+  G+  + V +TALI G+C+  K+  A  +L  M + G +P+  TY ++I   
Sbjct: 686 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 745

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K  +      L K M  +G  P V TY A+++GLCK+G    A  + + M++ G +P+ 
Sbjct: 746 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 805

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           +TY+ L+    + G  E+ + L +E    GL+ D   Y  ++
Sbjct: 806 LTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 847



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 159/301 (52%), Gaps = 6/301 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   ++  +N ++   C  G  K A +V +   +RG  A  V++NT+I G+C + N    
Sbjct: 590 GLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 649

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+  +M   G +PD ++Y+ LI G CK ++++ A  L +EM + GL PN+V +T LIDG
Sbjct: 650 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDG 709

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK+ ++D A        +++ M  +G  P+  TY +L+ G  K+ +   A ++ K MI+
Sbjct: 710 YCKDEKLDTA------TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 763

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  + V +TA+I G C+ G    A  M  +M++ G  P+  TY+ +I    + G  + 
Sbjct: 764 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 823

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L  E+   G +P   TY  ++      G++++A   L  M+  G  P   TY +L++
Sbjct: 824 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 883

Query: 424 G 424
           G
Sbjct: 884 G 884



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 183/367 (49%), Gaps = 6/367 (1%)

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +I   D+G  +DA + F  ++             LI  +  + L  V +G +  +   G 
Sbjct: 497 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 556

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+   +N L++ L +  +IK A +V +  G+ GL    V++N +I G+C   +  +   
Sbjct: 557 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAML 616

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + + M   G   ++ TY+ +I G C       A  +L  M + G  P++  +T LI G C
Sbjct: 617 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 676

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  +      M+ A  + +EM  +GL P+++TYT L+DG+CK+  L++A  + + M + G
Sbjct: 677 KISK------MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG 730

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
              +   +  LI G  +      AE + + M++ G+ P+  TYT +ID  CKNG T    
Sbjct: 731 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 790

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            +  +M   G LP + TY++L+  L + G+++ A  L   +   G++PD+ITY  ++E +
Sbjct: 791 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 850

Query: 426 CKHGNPE 432
              G  E
Sbjct: 851 IMSGKVE 857



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 169/346 (48%), Gaps = 11/346 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           T+ F   +   G    ++ ++ L+  L + G        +      G+    + +N +IN
Sbjct: 334 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 393

Query: 173 GHCKAKNL-DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
             CK  N+ D    +K V E S M PD +TY+++I G C+++ LD A  + ++M + G  
Sbjct: 394 ALCKDGNVADAETIMKKVFE-SEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 452

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN V ++TLI+G C +GR++      EA  ++ EM  +G+ P   T T  +   C  G  
Sbjct: 453 PNTVTYSTLINGLCDSGRVN------EAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 506

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           E A  +  +M  +G E +   +TALISG C  G +  A  +   M + G+ P+  TY  +
Sbjct: 507 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 566

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I+   +N   K  F +L  M  +G    + TYN ++ G C  G  K A ++++ ML  G 
Sbjct: 567 INILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 626

Query: 412 VPDDITYNILLEGHCKHGNPEDFDK---LQSEKGLVSDYACYTSLV 454
             + +TYN +++G+C  GN     +   L  + G   D   YT L+
Sbjct: 627 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 672



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 170/431 (39%), Gaps = 91/431 (21%)

Query: 122  DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            D G  P  + +  L+   CK  K++ A  +F+E    GL    V++  LI+G+CK + LD
Sbjct: 658  DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLD 717

Query: 182  EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
                L   M+ SG RP+V TY+ LI+GL K+N    AE L   M E G+ PN V +T +I
Sbjct: 718  TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 777

Query: 242  DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
            DG CKNG   +A                             G ++EA  +  E+  +GL 
Sbjct: 778  DGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 837

Query: 273  PDKIT-----------------------------------YTILLDGF------------ 285
            PD+IT                                   Y +L+ G             
Sbjct: 838  PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLA 897

Query: 286  --------CKEGDLESALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERML 333
                    C  G   +  D    M  +  ELD         AL+S     G+  EA  +L
Sbjct: 898  ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 957

Query: 334  REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
              M+  GL PD   Y  ++    +  +      + K M + G    +  Y  L+  LC+ 
Sbjct: 958  GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQL 1017

Query: 394  GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
             + K A +  + ML     PDD+   +L++G  + G  +   +F  +   +  +  +  Y
Sbjct: 1018 HRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIY 1077

Query: 451  TSLVSKSSKYR 461
            T L  ++SK R
Sbjct: 1078 TILAREASKKR 1088



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 18/305 (5%)

Query: 100  LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            +ID + +    ++ L  + ++++ G  P++  ++ L+  L +EGK+++A+ +F E  + G
Sbjct: 776  MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 835

Query: 160  LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            L    +++  +I  +  +  ++  F     M  +G +P ++TY  LI GL  E  L D  
Sbjct: 836  LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 895

Query: 220  LL----LHEMCERGLTPNDVIFTTLIDG-----------HCKNG---RIDMAGDMKEARK 261
            L     +   C  G    D    +++               +N     +  AG   EA +
Sbjct: 896  LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 955

Query: 262  IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            ++  M + GL PD+  Y  LL    +  +++ A+ + K M  +G E+    +  LI   C
Sbjct: 956  LLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 1015

Query: 322  RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
            +  +  EA      ML     PDD    ++ID   ++G        L  M +  ++P+  
Sbjct: 1016 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFH 1075

Query: 382  TYNAL 386
             Y  L
Sbjct: 1076 IYTIL 1080



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           M      +D +  +GL      Y+ LL    + G   + +D    M+  G++ + + + A
Sbjct: 331 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 390

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +I+  C+ G V +AE +++++ +  + PD  TYT +I   C+  D  +  ++  +M  +G
Sbjct: 391 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 450

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435
             P   TY+ L+NGLC  G++  A  L+  M+  G++P   T    +   C  G  ED  
Sbjct: 451 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 510

Query: 436 KL---QSEKGLVSDYACYTSLVS 455
           +L      KG   +   YT+L+S
Sbjct: 511 RLFVDMKNKGCEPNVYTYTALIS 533


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 203/449 (45%), Gaps = 26/449 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           AYS ++  L+  +    A  L+H +VS                  G  +  ++ D  + V
Sbjct: 317 AYSILIDGLLKGRNADAANGLVHEMVS-----------------HGFSIDPMMYDYFICV 359

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G ++ A   F  +        AR    LI+   R           +EI       S
Sbjct: 360 MSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVIS 419

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
            Y +   +  +C  G +  A  +  E G  G     V + TLI    +     +  R+  
Sbjct: 420 PYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLK 479

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ PD + Y++LI GL K  ++D+A   L EM E G  P+   +   I G+ +  
Sbjct: 480 EMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIE-- 537

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
               AG+   A K V EM   G+ P+K+  T L++ +CK+G +  A    + M+++GI  
Sbjct: 538 ----AGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILG 593

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D   +T L++G  + GKV +AE +  EM   G+ PD  +Y  +ID F K G+ +    + 
Sbjct: 594 DAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIF 653

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM   G    V  YN L+ G C+ G+++ A  LLD M   G  P+ +TY  +++G+CK 
Sbjct: 654 DEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKS 713

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G+  +  +L  E   KGLV D   YT+LV
Sbjct: 714 GDLAEAFQLFDEMKLKGLVPDSFVYTTLV 742



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 185/406 (45%), Gaps = 70/406 (17%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V ++  L+    ++ +  DA  V  E  ++G+      +N+LI G  KAK +DE 
Sbjct: 450 GCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEA 509

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M  +G +PD +TY A I+G  +      A+  + EM E G+ PN V+ T LI+ 
Sbjct: 510 RSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINE 569

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           +CK G++  A                             G + +A +I  EM   G+ PD
Sbjct: 570 YCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPD 629

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             +Y  L+DGF K G+++ A  I  EM++ G+  + + +  L+ GFCR G++ +A+ +L 
Sbjct: 630 VFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLD 689

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM   G  P+  TY  +ID +CK+GD    F+L  EM+  G +P    Y  L++G C+  
Sbjct: 690 EMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLN 749

Query: 395 QLKNA--------------------------------------NMLLDTMLDLGVVPDDI 416
            ++ A                                      N L+D   D    P+D+
Sbjct: 750 DVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDV 809

Query: 417 TYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           TYNI+++  CK GN E   +L     +  L+     YTSL++   K
Sbjct: 810 TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDK 855



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 203/394 (51%), Gaps = 9/394 (2%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           + S F S++E +G          LM   V  G ++DA + F  +R             LI
Sbjct: 579 ACSAFRSMVE-QGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLI 637

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           D   +          + E++  G + +V ++N+L+   C+ G+I+ A+ + DE   +G  
Sbjct: 638 DGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFP 697

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
             AV++ T+I+G+CK+ +L E F+L   M+  G+ PD + Y+ L++G C+ N ++ A + 
Sbjct: 698 PNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA-IT 756

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           + E  E+G   +   F  LI+   K G+ ++  DM    +++D        P+ +TY I+
Sbjct: 757 IFETNEKGCASSSAPFNALINWVFKFGKTELTTDM--INRLMDGSFDKFGKPNDVTYNIM 814

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +D  CKEG+LE+A ++   M K  +    + +T+L++G+ + G+  E   +  E++  G+
Sbjct: 815 IDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGI 874

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS-----DGHLPAVETYNALMNGLCKHGQL 396
           +PD+  Y+++I+ F K G T     LL +M +     DG   ++ T  AL++G  K G++
Sbjct: 875 EPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEM 934

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           + A  +++ M+ L  +PD  T   L+   C   N
Sbjct: 935 EVAEKVVENMVRLKYIPDSSTVIELINESCISSN 968



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 197/454 (43%), Gaps = 70/454 (15%)

Query: 57  LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC--LIDRMMRTNLPTVTL 114
           L G+++D     Y++ GFLD+A+  F   +     +     RC  L+D +++ N   +  
Sbjct: 154 LFGILIDG----YIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFW 209

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF----DEFGKRGLHATAVSFNTL 170
             Y  +++      V  + +L+   C++G ++ A+ V     +E G   L          
Sbjct: 210 DVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATL---------- 259

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
                   N+DE   LK  M   G+ P   +Y+ LI+GLCK+ RL+DA+ LL EM   GL
Sbjct: 260 --------NVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGL 311

Query: 231 TPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARK 261
             ++V ++ LIDG  K    D A                             G M++A+ 
Sbjct: 312 FADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKA 371

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           + D M T G+ P    Y  L++GF +E ++    ++  E+ KR I +    +   + G C
Sbjct: 372 LFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMC 431

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             G +  A  +++EM   G +P+   YT +I  F +        R+LKEMR  G  P   
Sbjct: 432 SSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTF 491

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE- 440
            YN+L+ GL K  ++  A   L  M++ G  PD  TY   + G+ + G     DK   E 
Sbjct: 492 CYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEM 551

Query: 441 ------------KGLVSDYACYTSLVSKSSKYRQ 462
                        GL+++Y     ++   S +R 
Sbjct: 552 LECGVIPNKVLCTGLINEYCKKGKVIEACSAFRS 585



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 11/175 (6%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +N+++  LCKEG ++ A+ +F    K  L  T +++ +L+NG+ K     E F +
Sbjct: 806 PNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSV 865

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT-----TLI 241
              +  +G+ PD   YS +IN   KE     A +LL +M  +    +    +      L+
Sbjct: 866 FDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALL 925

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            G  K       G+M+ A K+V+ M      PD  T   L++  C   +   A D
Sbjct: 926 SGFAK------VGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAAD 974


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 174/331 (52%), Gaps = 15/331 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++    P V +F+ ++  LCKEGKI +A  V D    RG+    V++N L++GHC   
Sbjct: 269 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 328

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++   M  +G  P+V +Y+ LING CK  R+D A  L  EMC++ L PN V + 
Sbjct: 329 EMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYN 388

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+   C  GR      +++A  +  EM  +G  PD  TY ILLD  CK+  L+ A+ + 
Sbjct: 389 TLMH-XCHVGR------LQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALL 441

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K +    ++ D   +T +I G CR G++  A  +   +   GL+P+  TYT++I+  C+ 
Sbjct: 442 KTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRR 501

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      +L  EM  +G  P   TYN +  GL ++ +   A  LL  ML  G   D  T 
Sbjct: 502 GLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTT 561

Query: 419 NILLEGHCKHGNPEDFDKL-QSEKGLVSDYA 448
            +L+E  C        DKL QS K ++S++ 
Sbjct: 562 TLLVEMLCD-------DKLDQSVKQILSEFV 585



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 182/389 (46%), Gaps = 12/389 (3%)

Query: 70  VDLGFLDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           ++   LDDA+  F R+L  H         R L         PTV      ++  +G  P 
Sbjct: 45  LNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTV-FSLSNQMDSFGIPPD 103

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           VY  N+L++  C   ++  A  V  +  K G      +F TLI G C    + +   L  
Sbjct: 104 VYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFD 163

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M G G +P+V TY  LINGLCK    + A  LL  M +    P+ V++T++ID  CK+ 
Sbjct: 164 KMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 223

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       EA  +  +M   G++PD  TYT L+   C   + +    +  +MI   I  
Sbjct: 224 QV------TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMP 277

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V F+ ++   C+ GK+ EA  ++  M+  G++P+  TY  ++D  C   +     ++ 
Sbjct: 278 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 337

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M  +G+ P V +YN L+NG CK  ++  A  L + M    ++P+ +TYN L+   C  
Sbjct: 338 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHV 396

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G  +D   L  E    G + D A Y  L+
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILL 425



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 165/322 (51%), Gaps = 11/322 (3%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   F+         + V FN L+    K K     F L + M+  G+ PDVYT + 
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN  C  NRL  A  +L ++ + G  P+   FTTLI G C  G+I   GD   A  + D
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKI---GD---ALHLFD 163

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G  P+ +TY  L++G CK G+  +A+ + + M +   + D V +T++I   C+  
Sbjct: 164 KMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 223

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +V EA  +  +M+  G+ PD  TYT +I   C   + K    LL +M +   +P V  ++
Sbjct: 224 QVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFS 283

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSE 440
            +++ LCK G++  A+ ++D M+  GV P+ +TYN L++GHC     ++    FD +   
Sbjct: 284 TVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTM-VH 342

Query: 441 KGLVSDYACYTSLVSKSSKYRQ 462
            G   +   Y +L++   K ++
Sbjct: 343 NGYAPNVISYNTLINGYCKIQR 364



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 7/303 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G  + A     ++  RG     +  +ALM  +     +D+A++ F  +  + +     
Sbjct: 291 KEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVI 350

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI+   +          + E+      P+   +N LMH  C  G+++DA  +F E 
Sbjct: 351 SYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHX-CHVGRLQDAIALFHEM 409

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G      ++  L++  CK  +LDE   L   +EGS M PD+  Y+ +I+G+C+   L
Sbjct: 410 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 469

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           + A  +   +  +GL PN   +T +I+G C+ G +D      EA K+  EM  NG +PD 
Sbjct: 470 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLD------EANKLFMEMDGNGCSPDG 523

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY  +  G  +  +   A+ + +EM+ RG   D    T L+   C        +++L E
Sbjct: 524 CTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSE 583

Query: 336 MLK 338
            ++
Sbjct: 584 FVQ 586


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 188/345 (54%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++    +P++  FN L+  LC+ G  +    V  +  + G       + T+I+G CK  
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    + + M   G++P+V  Y+ ++ GLC   R  +AE LL EM ++    +DV F 
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M ++G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 361 ILVDFFCQNGLVD------RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLL 414

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G + + V++T ++ G C  G+ V+AE ++ +M++ G  P+  T+  +I+  CK 
Sbjct: 415 KSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKK 474

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+ + A  LL+ M++ G+ P+ I Y
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     + G        FD ++ +  + SD   Y +++S   K
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIK-DTTIRSDAVLYNAVISSLCK 578



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 10/327 (3%)

Query: 118 LEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE+LD     G +P   +++V++   C+ G  +++  V +    +G      + N ++N 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+   +DE   L   +   G   D+ +Y+A++ GLC   R  D E L+ EM      PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V F TLI   C+NG  +         +++ +M  +G  PD   Y  ++DG CKEG LE 
Sbjct: 251 IVTFNTLIGYLCRNGLFE------RVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A +I   M   G++ + V +  ++ G C   +  EAE +L EM +     DD T+ +++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            FC+NG       LL++M S G +P V TY  ++NG CK G +  A MLL +M   G  P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE 440
           + ++Y I+L+G C  G   D ++L S+
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQ 451



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 178/350 (50%), Gaps = 9/350 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +G   ++  +G    +  +N ++  LC   +  D + + DE  +       V+FNTLI 
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIG 259

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             C+    +    + + M   G  PD+  Y+ +I+G+CKE  L+ A  +L+ M   GL P
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V + T++ G C   R       KEA +++ EM       D +T+ IL+D FC+ G ++
Sbjct: 320 NVVCYNTVLKGLCSAER------WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             +++ ++M+  G   D + +T +I+GFC+ G + EA  +L+ M   G KP+  +YT+V+
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              C  G       L+ +M   G  P   T+N L+N LCK G ++ A  LL  ML  G  
Sbjct: 434 KGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           PD I+Y+ +++G  K G  E+  +L +    KG+  +   Y+S+    S+
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 9/325 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N++++ +C++G + +A  +  +    G  A  VS+N ++ G C AK   +   L   M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P++ T++ LI  LC+    +    +L +M E G TP+  ++ T+IDG CK G +++
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A +      I++ M + GL P+ + Y  +L G C     + A ++  EM ++   LD+V 
Sbjct: 305 ANE------ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+  FC+ G V     +L +ML  G  PD  TYT VI+ FCK G       LLK M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G  P   +Y  ++ GLC  G+  +A  L+  M+  G  P+ +T+N L+   CK G  E
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  +    G   D   Y++++
Sbjct: 479 QAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 160/319 (50%), Gaps = 6/319 (1%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG  P+V  +N ++  LC   + K+A+ +  E  ++      V+FN L++  C+   +D
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M   G  PDV TY+ +ING CKE  +D+A +LL  M   G  PN V +T ++
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVL 433

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C  GR        +A +++ +M   G  P+ +T+  L++  CK+G +E A+++ K+M
Sbjct: 434 KGLCSAGR------WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G   D ++++ +I G  + GK  EA  +L  M+  G+ P+   Y+ +     + G  
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
               ++   ++          YNA+++ LCK  +   A      M+  G +P++ TY +L
Sbjct: 548 NKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607

Query: 422 LEGHCKHGNPEDFDKLQSE 440
           ++G    G  ++  +L SE
Sbjct: 608 IKGLASEGLAKEAQELLSE 626



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++    G     +++ T+ING CK   +DE   L   M 
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC   R  DAE L+ +M ++G  PN V F TLI+  CK G ++
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  E AL++   M+ +GI  + +
Sbjct: 479 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++     R G+V +  +M   +    ++ D   Y  VI   CK  +T         M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S+G +P   TY  L+ GL   G  K A  LL  +   G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 6/278 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +  L    +    ++L +G  P V  +  +++  CKEG I +A M+       G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                VS+  ++ G C A    +   L S M   G  P+  T++ LIN LCK+  ++ A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   G +P+ + ++T+IDG      +  AG  +EA ++++ M   G++P+ I Y+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDG------LGKAGKTEEALELLNVMVNKGISPNTIIYS 535

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +     +EG +   + +   +    I  D V + A+IS  C+  +   A      M+  
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           G  P+++TYTM+I      G  K    LL E+ S G L
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 12/223 (5%)

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +  ++ G+C+ G++  A  +  A  +          P+  T+  ++ G C  G +  A
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAVPV---------PPNAYTFFPVVRGLCTRGRIADA 130

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L++  EM  +G       +  ++   CR G    + R+L  M   G   D     +V++ 
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+ G       LL+++   G    + +YNA++ GLC   +  +   L+D M+ +   P+
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            +T+N L+   C++G  E   ++    SE G   D   Y +++
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 175/388 (45%), Gaps = 64/388 (16%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P+   + +L+H LCK G I+DA  +FD+   +G+  T   +N+LING+C
Sbjct: 360 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  +LD    L S M   G+ P   +YS LI GLC+   L     L  EM ERG+  N+ 
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 479

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
            FT LI+G CK+ ++D A                             G++++A ++ D+M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 267 CTNGLNPDKITY-----------------------------------TILLDGFCKEGDL 291
              GL PD  TY                                   T LL GF +EG  
Sbjct: 540 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRF 599

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
                +  EM  RG++LD V+FT ++    +     ++  + REM + G+KPDD  YT +
Sbjct: 600 TETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 659

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID   K  +         +M  DG+ P   T+  L+N LCK G L +A +L   ML   V
Sbjct: 660 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNV 719

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQS 439
           +P+  TYN  L+     G+ E    L S
Sbjct: 720 LPNKFTYNCFLDYFATEGDMEKAKDLHS 747



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 192/417 (46%), Gaps = 67/417 (16%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G  + +   G   S   +NVLM+ LCK  ++++A  V +     G+ A  V++ TL+ G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 175 CKAKNLD-----------------------------------EGFRLKSVMEGSGMRPDV 199
           C+ + L+                                   E F L   +   GM P+V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------ 253
           + Y+ALI+ LCK  R DDA+ L  EM  RGL PN+V +  LI   CK G I+ A      
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 254 -----------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
                                  G +  AR ++  M   GL P   +Y+ L+ G C+ GD
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           L S +++ +EM +RGI  +N  FTALI+GFC+  K+ EA R+  +M+   + P++ T+ +
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ +C  G+ +  F+L  +M   G  P   TY +L++GLC    +  AN  +  + +  
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQKR 464
            V ++ +   LL G  + G   +   L  E   +G+  D   +T +V  + K   K 
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKE 635



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 184/373 (49%), Gaps = 12/373 (3%)

Query: 92  IPARG-CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
           +P+   C  +ID + +  L         ++ D G  P+V+ +N L+ KLCK  +  DA  
Sbjct: 300 VPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADR 359

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +F E   RGL    V++  LI+  CK   +++   L   M   G++  VY Y++LING C
Sbjct: 360 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           K+  LD A  LL  M + GLTP    ++ LI G C+N      GD+    ++  EM   G
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN------GDLSSCMELHREMAERG 473

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +  +  T+T L++GFCK+  ++ A  +  +MI   +  + V F  +I G+C  G + +A 
Sbjct: 474 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 533

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++  +M+++GLKPD+ TY  +I   C           + ++ +   +    +  AL+ G 
Sbjct: 534 QLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGF 593

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
            + G+      L D M   GV  D +++ I++    K  + E     F +++ E+G+  D
Sbjct: 594 FREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMK-EQGVKPD 652

Query: 447 YACYTSLVSKSSK 459
              YT ++   SK
Sbjct: 653 DIFYTCMIDALSK 665



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 172/338 (50%), Gaps = 9/338 (2%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G + + Y  + ++  L K  +   A+ +FD+  + G+H     +   I  +C+++NL
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D    L   ME  G++     Y+ L+ GLCK  R+ +A  + + M   G+T ++V + TL
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           + G C+   ++MA       +I  +M   G  P +   + ++D   K+  +E A  +  +
Sbjct: 275 VYGFCRMEELEMA------LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 328

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +   G+  +  A+ ALI   C+  +  +A+R+ +EM   GL+P++ TY ++I   CK G 
Sbjct: 329 LGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGM 388

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +    L  +MR  G    V  YN+L+NG CK G L  A  LL  M+  G+ P   +Y+ 
Sbjct: 389 IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 448

Query: 421 LLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           L+ G C++G+     +  +  +E+G+  +   +T+L++
Sbjct: 449 LIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALIN 486



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +    L++   +EG+  +   ++DE   RG+    VSF  ++    K  + ++   L   
Sbjct: 584 FSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFRE 643

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+  G++PD   Y+ +I+ L KE  +  A     +M   G +PN V  T LI+  CK+G 
Sbjct: 644 MKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGY 703

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 +  A  +  EM    + P+K TY   LD F  EGD+E A D+   M++ G    
Sbjct: 704 ------LGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLAS 756

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V+F  LI G C+ GK+ EA  ++ ++ + G  PD  +Y+ +I   CK GD    F L  
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 816

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           EM   G  P V  YN  +     HG+   A  +   M+  GV P+  TY  LL G
Sbjct: 817 EMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/503 (24%), Positives = 208/503 (41%), Gaps = 81/503 (16%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+H +  K+GM   A      +  +G  +     ++L+  Y   G LD A      + K 
Sbjct: 379 LIHALC-KRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 437

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                A     LI  + R    +  +  + E+ + G + + Y F  L++  CK+ K+ +A
Sbjct: 438 GLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 497

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +FD+     +    V+FN +I G+C   N+ + F+L   M   G++PD YTY +LI+G
Sbjct: 498 ARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISG 557

Query: 209 LC-----------------------------------KENRLDDAELLLHEMCERGLTPN 233
           LC                                   +E R  +   L  EM  RG+  +
Sbjct: 558 LCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLD 617

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V FT ++    K        D +++  +  EM   G+ PD I YT ++D   KE ++  
Sbjct: 618 LVSFTIIVYAALKQH------DKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQ 671

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL+   +M+  G   + V  T LI+  C+ G +  AE + +EML   + P+  TY   +D
Sbjct: 672 ALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLD 731

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-------------- 399
            F   GD +    L   M   GHL ++ ++N L+ GLCK G+++ A              
Sbjct: 732 YFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSP 790

Query: 400 ---------------------NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
                                  L + ML  G+ PD + YNI +     HG  +    + 
Sbjct: 791 DCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIY 850

Query: 439 S---EKGLVSDYACYTSLVSKSS 458
           +     G+  ++  Y +L+S  S
Sbjct: 851 TNMIRSGVQPNWDTYRALLSGIS 873


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 176/333 (52%), Gaps = 8/333 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+V VF+ L+  LCK+ ++ +A  +F E   +G+    V++N+LI+G CK         
Sbjct: 207 QPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT 266

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M  S + PDV+T + +++ LCKE  + +A  ++  M  RG+ PN V +  L+DGHC
Sbjct: 267 LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHC 326

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
               +D+A       K+ D M       + I+Y  L++G+CK   ++ A+ + +EM ++ 
Sbjct: 327 LRNEVDVA------VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 380

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V +  LI G C  G++ +A  +  EM+  G  PD  TY  + D  CKN       
Sbjct: 381 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 440

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LLK +      P ++ Y  +++G+C+ G+L++A  L   +   G+ P+  TYNI++ G 
Sbjct: 441 ALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 500

Query: 426 CKHGNPEDFDKLQSE--KGLVSDYACYTSLVSK 456
           CK G   +  KL SE  K   S   C  +L+++
Sbjct: 501 CKQGLLAEASKLFSEMNKNGCSPNDCTYNLITR 533



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 174/369 (47%), Gaps = 34/369 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  G+ P    F  L+  LC EGKI +A  +FD+    G     V++ TLING CK  
Sbjct: 130 KILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 189

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N     RL   ME    +P+V  +S LI+ LCK+ ++ +A  +  EM  +G++PN V + 
Sbjct: 190 NTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYN 249

Query: 239 TLIDGHCK--------------------------NGRIDM---AGDMKEARKIVDEMCTN 269
           +LI G CK                          N  +D     G + EA  +VD M   
Sbjct: 250 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR 309

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ P+ +TY  L+DG C   +++ A+ +   M+ +    + +++  LI+G+C+   V +A
Sbjct: 310 GVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKA 369

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  EM +  L P+  TY  +I   C  G  +    L  EM + G +P + TY  L + 
Sbjct: 370 MYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVS 445
           LCK+  L  A  LL  +      PD   Y  +L+G C+ G  ED    F  L S KGL  
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQP 488

Query: 446 DYACYTSLV 454
           +   Y  ++
Sbjct: 489 NVWTYNIMI 497



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 179/392 (45%), Gaps = 11/392 (2%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LD+A+  F R+L K          R L+  + +T   +  L    ++  +G  P VY   
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNR-LLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLA 109

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           ++++ LC   ++  A     +  K G    A +F TLI G C    + E   L   M G 
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G +P+V TY  LINGLCK      A  LL  M +    PN V+F+TLID  CK+ ++   
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV--- 226

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA  I  EM T G++P+ +TY  L+ G CK  + +    +  EM+   I  D    
Sbjct: 227 ---TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 283

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++   C+ G V EA  ++  M+  G++P+  TY  ++D  C   +     ++   M  
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH 343

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
              +  V +YN L+NG CK   +  A  L + M    + P+ +TYN L+ G C  G  +D
Sbjct: 344 KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQD 403

Query: 434 FDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
              L  E   +G + D   Y +L     K R 
Sbjct: 404 AISLFHEMVARGQIPDLVTYRTLSDYLCKNRH 435



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 144/280 (51%), Gaps = 6/280 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N LM   C   ++  A  VFD    +   A  +S+NTLING+CK +++D+ 
Sbjct: 310 GVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKA 369

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M    + P+  TY+ LI+GLC   RL DA  L HEM  RG  P+ V + TL D 
Sbjct: 370 MYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN  +D A  + +A +       +  +PD   YT +LDG C+ G+LE A D+   +  
Sbjct: 430 LCKNRHLDKAMALLKAIE------GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS 483

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++ +   +  +I G C+ G + EA ++  EM K G  P+D TY ++   F +N +   
Sbjct: 484 KGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALR 543

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              LL+EM + G    V T   L+  L   G  ++   +L
Sbjct: 544 TIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 583


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 192/400 (48%), Gaps = 69/400 (17%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            LG+   ++D G +PS+  F  +++  C +G + +A+ +FD   + G     V +NTL+N
Sbjct: 203 ALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMN 262

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI-------------------------- 206
           G+ KA+++ +   L   M+   + PD  T++ L+                          
Sbjct: 263 GYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLS 322

Query: 207 ---------NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---- 253
                    +GLC    LD+A   L +M E+G+TP  V F ++I  + + G  + A    
Sbjct: 323 ISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAY 382

Query: 254 -------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
                                      ++EAR ++ EM   GL  +K  +T+LLDG+ + 
Sbjct: 383 RMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRM 442

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           GD+  A  +  EM  RGI  D VAF+A I+G    G V EA  +  +M K G  P++  Y
Sbjct: 443 GDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVY 502

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +I  FC +G  +    L +EM   G LP + T N ++NGLCK G++K+A+ +   M  
Sbjct: 503 NSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHH 562

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA 448
            G++PD +TYN L++G+CK      FD + +++ +   YA
Sbjct: 563 TGLIPDIVTYNTLIDGYCKA-----FDTVSTDEVVNKMYA 597



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 180/360 (50%), Gaps = 7/360 (1%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G+LD+A++    + +            +I    R  L       Y  ++ +G  PS    
Sbjct: 338 GWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTC 397

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L+  L K  ++++A+ +  E    GL     +F  L++G+ +  ++   + L + MEG
Sbjct: 398 SSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEG 457

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PD   +SA INGL     +D+A  +  +M ++G  PN+ ++ +LI G C +GR   
Sbjct: 458 RGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGR--- 514

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              ++EA  +  EM   GL PD  T  I+++G CKEG ++SA D+ + M   G+  D V 
Sbjct: 515 ---LQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVT 571

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  LI G+C+    V  + ++ +M   G  PD  TY + +   C          +L+E+ 
Sbjct: 572 YNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELI 631

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G +P   TYN +MNG+C    L+ A ++   +L +  VP+ +T N+LL   CK G PE
Sbjct: 632 SAGVVPDTVTYNTVMNGVCTD-VLERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQGMPE 690



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 11/364 (3%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  ++++  Y   G  + A + +R++ K      +  C  LI  + +            E
Sbjct: 360 VAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYE 419

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G   +   F +L+    + G +  A  +++E   RG+H  AV+F+  ING      
Sbjct: 420 MIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGL 479

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +DE + +   M   G  P+ + Y++LI G C   RL +A +L  EM  +GL P+  IFTT
Sbjct: 480 VDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPD--IFTT 537

Query: 240 --LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             +I+G CK GR      MK A  +   M   GL PD +TY  L+DG+CK  D  S  ++
Sbjct: 538 NIIINGLCKEGR------MKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEV 591

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +M   G + D   +   + G C G K+  A  ML E++  G+ PD  TY  V++  C 
Sbjct: 592 VNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVCT 651

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           +   +      K ++    +P V T N L++  CK G  +   M    + ++    D+I+
Sbjct: 652 DVLERAMIVTAKLLKM-AFVPNVVTANLLLSHFCKQGMPEKTIMWGQKLNEISFGFDEIS 710

Query: 418 YNIL 421
             ++
Sbjct: 711 IKLM 714



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/549 (21%), Positives = 208/549 (37%), Gaps = 115/549 (20%)

Query: 15  HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALMIVYVDLG 73
           H L A  +   A+D++  ++ + G+  S  +   + +          VLD LM  ++ + 
Sbjct: 34  HVLGAQNLKFLAQDVVSWVIRRVGVDRSREVVEFMWKRHAEFESDFSVLDTLMRGFLKVE 93

Query: 74  FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
              +A++    +R+   R  +     L   ++R             ++  G  P    FN
Sbjct: 94  MGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFN 153

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            ++   C++G +K  + +     K        ++N LIN +C      +       M  +
Sbjct: 154 AVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDN 213

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G  P + T+  +IN  C +  + +A  L   M E G  PN V + TL++G+ K      A
Sbjct: 214 GCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVK------A 267

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTIL-------------------------------- 281
            D+ +A  + +EM +  + PD  T+ IL                                
Sbjct: 268 RDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLY 327

Query: 282 ---LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG-------------- 324
              + G C  G L+ A+   ++M+++GI    VAF ++I+ + R G              
Sbjct: 328 NICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVK 387

Query: 325 ---------------------KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                                ++ EA  +L EM+  GL  + A +T+++D + + GD   
Sbjct: 388 FGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAG 447

Query: 364 GFRLLKEMRS-----------------------------------DGHLPAVETYNALMN 388
            + L  EM                                      G +P    YN+L+ 
Sbjct: 448 AYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIR 507

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVS 445
           G C  G+L+ A ML   M   G++PD  T NI++ G CK G   +  D  +     GL+ 
Sbjct: 508 GFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIP 567

Query: 446 DYACYTSLV 454
           D   Y +L+
Sbjct: 568 DIVTYNTLI 576



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 14/264 (5%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +E RG H   +   A +     +G +D+A   F  + K  F         LI     +  
Sbjct: 455 MEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGR 514

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
               L    E+   G  P ++  N++++ LCKEG++K A  VF      GL    V++NT
Sbjct: 515 LQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNT 574

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LI+G+CKA +      + + M  +G  PD+ TY+  ++GLC   ++  A ++L E+   G
Sbjct: 575 LIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAG 634

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           + P+ V + T+++G C +        ++ A  +  ++      P+ +T  +LL  FCK+G
Sbjct: 635 VVPDTVTYNTVMNGVCTD-------VLERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQG 687

Query: 290 DLESALDIRKEMIKRGIELDNVAF 313
                  + ++ I  G +L+ ++F
Sbjct: 688 -------MPEKTIMWGQKLNEISF 704



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 291 LESALDIRKEMIKRGIEL--DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           ++ + ++ + M KR  E   D      L+ GF +     EA  ++  M +VGL+P  +  
Sbjct: 58  VDRSREVVEFMWKRHAEFESDFSVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAI 117

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T++     + GD  + ++LL+ M   G  P    +NA++ G C+ G +K    LL  M  
Sbjct: 118 TILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQK 177

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
               PD   YNIL+  +C  G  + FD L   + ++ D  C  SLV+
Sbjct: 178 FKCQPDVYAYNILINAYCTRG--QTFDALGWMRFMI-DNGCTPSLVT 221


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 176/333 (52%), Gaps = 8/333 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+V VF+ L+  LCK+ ++ +A  +F E   +G+    V++N+LI+G CK         
Sbjct: 207 QPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT 266

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L + M  S + PDV+T + +++ LCKE  + +A  ++  M  RG+ PN V +  L+DGHC
Sbjct: 267 LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHC 326

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
               +D+A       K+ D M       + I+Y  L++G+CK   ++ A+ + +EM ++ 
Sbjct: 327 LRNEVDVA------VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 380

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V +  LI G C  G++ +A  +  EM+  G  PD  TY  + D  CKN       
Sbjct: 381 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 440

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            LLK +      P ++ Y  +++G+C+ G+L++A  L   +   G+ P+  TYNI++ G 
Sbjct: 441 ALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 500

Query: 426 CKHGNPEDFDKLQSE--KGLVSDYACYTSLVSK 456
           CK G   +  KL SE  K   S   C  +L+++
Sbjct: 501 CKQGLLAEASKLFSEMNKNGCSPNDCTYNLITR 533



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 174/369 (47%), Gaps = 34/369 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  G+ P    F  L+  LC EGKI +A  +FD+    G     V++ TLING CK  
Sbjct: 130 KILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 189

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N     RL   ME    +P+V  +S LI+ LCK+ ++ +A  +  EM  +G++PN V + 
Sbjct: 190 NTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYN 249

Query: 239 TLIDGHCK--------------------------NGRIDM---AGDMKEARKIVDEMCTN 269
           +LI G CK                          N  +D     G + EA  +VD M   
Sbjct: 250 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR 309

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ P+ +TY  L+DG C   +++ A+ +   M+ +    + +++  LI+G+C+   V +A
Sbjct: 310 GVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKA 369

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +  EM +  L P+  TY  +I   C  G  +    L  EM + G +P + TY  L + 
Sbjct: 370 MYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVS 445
           LCK+  L  A  LL  +      PD   Y  +L+G C+ G  ED    F  L S KGL  
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS-KGLQP 488

Query: 446 DYACYTSLV 454
           +   Y  ++
Sbjct: 489 NVWTYNIMI 497



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 179/392 (45%), Gaps = 11/392 (2%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           LD+A+  F R+L K          R L+  + +T   +  L    ++  +G  P VY   
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNR-LLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLA 109

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           ++++ LC   ++  A     +  K G    A +F TLI G C    + E   L   M G 
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G +P+V TY  LINGLCK      A  LL  M +    PN V+F+TLID  CK+ ++   
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV--- 226

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               EA  I  EM T G++P+ +TY  L+ G CK  + +    +  EM+   I  D    
Sbjct: 227 ---TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 283

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++   C+ G V EA  ++  M+  G++P+  TY  ++D  C   +     ++   M  
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH 343

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
              +  V +YN L+NG CK   +  A  L + M    + P+ +TYN L+ G C  G  +D
Sbjct: 344 KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQD 403

Query: 434 FDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
              L  E   +G + D   Y +L     K R 
Sbjct: 404 AISLFHEMVARGQIPDLVTYRTLSDYLCKNRH 435



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 144/280 (51%), Gaps = 6/280 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N LM   C   ++  A  VFD    +   A  +S+NTLING+CK +++D+ 
Sbjct: 310 GVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKA 369

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M    + P+  TY+ LI+GLC   RL DA  L HEM  RG  P+ V + TL D 
Sbjct: 370 MYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN  +D A  + +A +       +  +PD   YT +LDG C+ G+LE A D+   +  
Sbjct: 430 LCKNRHLDKAMALLKAIE------GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS 483

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++ +   +  +I G C+ G + EA ++  EM K G  P+D TY ++   F +N +   
Sbjct: 484 KGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALR 543

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              LL+EM + G    V T   L+  L   G  ++   +L
Sbjct: 544 TIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 583


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 193/416 (46%), Gaps = 67/416 (16%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G  + +   G   S   +NVLM+ LCK  ++++A  V +     G+ A  V++ TL+ G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 175 CKAKNLD-----------------------------------EGFRLKSVMEGSGMRPDV 199
           C+ + L+                                   E F L   +   GM P+V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------ 253
           + Y+ALI+ LCK  R DDA+ L  EM  RGL PN+V +  LI   CK G I+ A      
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 254 -----------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
                                  G +  AR ++  M   GL P   +Y+ L+ G C+ GD
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           L SA+++ +EM +RGI  +N  FTALI+GFC+  K+ EA R+  +M+   + P++ T+ +
Sbjct: 459 LSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ +C  G+ +  F+L  +M   G  P   TY +L++GLC    +  AN  +  + +  
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQK 463
            V ++ +   LL G  + G   +   L  E   +G+  D   +T +V  + K   K
Sbjct: 579 AVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDK 634



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 186/410 (45%), Gaps = 76/410 (18%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID++ +          + E+   G  P+   + +L+H LCK G I+DA  +FD+   +G
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +  T   +N+LING+CK  +LD    L S M   G+ P   +YS LI GLC+   L  A 
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAM 463

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM ERG+  N+  FT LI+G CK+ ++D      EA ++ D+M  + + P+++T+ 
Sbjct: 464 ELHREMAERGIAWNNYTFTALINGFCKDKKMD------EAARLFDKMIDSNVIPNEVTFN 517

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC------------------ 321
           ++++G+C  G++  A  +  +M++ G++ DN  + +LISG C                  
Sbjct: 518 VMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENS 577

Query: 322 -----------------RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                            R G+  E   +  EM   G+K D  ++T+++    K  D +  
Sbjct: 578 YAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKS 637

Query: 365 FRLLKEMRS-----------------------------------DGHLPAVETYNALMNG 389
             L +EM+                                    DG+ P   T+  L+N 
Sbjct: 638 CVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINN 697

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           LCK G L +A +L   ML   V+P+  TYN  L+     G+ E    L S
Sbjct: 698 LCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHS 747



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 186/373 (49%), Gaps = 12/373 (3%)

Query: 92  IPARG-CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
           +P+   C  +ID + +  L         ++ D G  P+V+ +N L+ KLCK  +  DA  
Sbjct: 300 VPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADR 359

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +F E   RGL    V++  LI+  CK   +++   L   M   G++  VY Y++LING C
Sbjct: 360 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           K+  LD A  LL  M + GLTP    ++ LI G C+N      GD+  A ++  EM   G
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN------GDLSSAMELHREMAERG 473

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +  +  T+T L++GFCK+  ++ A  +  +MI   +  + V F  +I G+C  G + +A 
Sbjct: 474 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 533

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++  +M+++GLKPD+ TY  +I   C           + ++ +   +    +  AL+ GL
Sbjct: 534 QLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGL 593

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
            + G+      L D M   GV  D +++ I++    K  + E     F +++ E+G+  D
Sbjct: 594 FREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMK-EQGVKPD 652

Query: 447 YACYTSLVSKSSK 459
              YT ++   SK
Sbjct: 653 DIFYTCMIDALSK 665



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 172/338 (50%), Gaps = 9/338 (2%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G + + Y  + ++  L K  +   A+ +FD+  + G+H     +   I  +C+++NL
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D    L   ME  G++     Y+ L+ GLCK  R+ +A  + + M   G+T ++V + TL
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           + G C+   ++MA       +I  +M   G  P +   + ++D   K+  +E A  +  +
Sbjct: 275 VYGFCRMEELEMA------LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 328

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +   G+  +  A+ ALI   C+  +  +A+R+ +EM   GL+P++ TY ++I   CK G 
Sbjct: 329 LGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGM 388

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +    L  +MR  G    V  YN+L+NG CK G L  A  LL  M+  G+ P   +Y+ 
Sbjct: 389 IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 448

Query: 421 LLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
           L+ G C++G+     +L    +E+G+  +   +T+L++
Sbjct: 449 LIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALIN 486



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 180/389 (46%), Gaps = 10/389 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K M  +A LF  ++++    +P  V   +MI  Y  +G +  A Q +  + +   +    
Sbjct: 492 KKMDEAARLFDKMIDS--NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNY 549

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
             R LI  +  T+  +    F  ++ +     + +    L++ L +EG+  +   ++DE 
Sbjct: 550 TYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEM 609

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             RG+    VSF  ++    K  + ++   L   M+  G++PD   Y+ +I+ L KE  +
Sbjct: 610 AVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENM 669

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
             A     +M   G +PN V  T LI+  CK+G +        A  +  EM    + P+K
Sbjct: 670 IQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLG------SAELLCKEMLAGNVLPNK 723

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY   LD F  EGD+E A D+   M++ G     V+F  LI G C+ GK+ EA  ++R+
Sbjct: 724 FTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMRK 782

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           + + G  PD  +Y+ +I   CK GD    F L  EM   G  P V  YN  +     HG+
Sbjct: 783 ITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGE 842

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEG 424
              A  +   M+  GV P+  TY  LL G
Sbjct: 843 SDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 203/495 (41%), Gaps = 78/495 (15%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+GM   A      +  +G  +     ++L+  Y   G LD A      + K      A 
Sbjct: 385 KRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAA 444

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               LI  + R    +  +  + E+ + G + + Y F  L++  CK+ K+ +A  +FD+ 
Sbjct: 445 SYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKM 504

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC----- 210
               +    V+FN +I G+C   N+ + F+L   M   G++PD YTY +LI+GLC     
Sbjct: 505 IDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGV 564

Query: 211 ------------------------------KENRLDDAELLLHEMCERGLTPNDVIFTTL 240
                                         +E R  +   L  EM  RG+  + V FT +
Sbjct: 565 SKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTII 624

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           +    K        D +++  +  EM   G+ PD I YT ++D   KE ++  AL+   +
Sbjct: 625 VYAALKQH------DKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ 678

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF----- 355
           M+  G   + V  T LI+  C+ G +  AE + +EML   + P+  TY   +D F     
Sbjct: 679 MVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD 738

Query: 356 -----------------------------CKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
                                        CK G  +    L++++   G  P   +Y+ +
Sbjct: 739 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTI 798

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGL 443
           ++ LCK G +  A  L + ML  G+ PD + YNI +     HG  +    + +     G+
Sbjct: 799 IHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV 858

Query: 444 VSDYACYTSLVSKSS 458
             ++  Y +L+S  S
Sbjct: 859 QPNWDTYRALLSGIS 873


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 185/358 (51%), Gaps = 18/358 (5%)

Query: 87  KHYFRIPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
           K ++RI   GC+        L+D ++  N   +    Y  +   G  P+V+ +N+L+  L
Sbjct: 130 KMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKAL 189

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           CK  ++  A  +F E   +G    AV++ T+++  CKA  +D+   L         +P V
Sbjct: 190 CKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSV 244

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
             Y+ALI+G+CKE R++ A  LL EM + G+ PN V ++ +I+  C +G +++A      
Sbjct: 245 PVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA------ 298

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
             +  +M   G + +  T+T L+ G    G L  ALD+ K MI+ G E + VA+  LI G
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C  G + EA ++  +M + G  P+  TY+++ID F K+GD          M S G  P 
Sbjct: 359 LCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPN 418

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           V TY  +++ LCK+     AN L++ M   G  P+ +T+N  ++G C +G  E   KL
Sbjct: 419 VVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKL 476



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 172/375 (45%), Gaps = 45/375 (12%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + PSV V+N L+  +CKEG+I+ A  +  E    G+    VS++ +IN  C + N++  F
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L + M   G   +++T++ LI G     +L +A  L   M + G  PN V + TLI G 
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C NG ++      EA ++ D+M  +G  P+  TY+IL+DGF K GDL  A +    MI  
Sbjct: 360 CSNGSLE------EALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISH 413

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   + V +T ++   C+     +A  ++ +M   G  P+  T+   I   C NG  +  
Sbjct: 414 GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWA 473

Query: 365 FRLLKEMRSDGHLPAVETYNALMN-----------------------------------G 389
            +LL+ M+  G LP + TYN L++                                   G
Sbjct: 474 MKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVS 445
             + G +  A  L    L  G  PD ITYN ++  +CK G      +  +++ S K    
Sbjct: 534 FSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHP 593

Query: 446 DYACYTSLVSKSSKY 460
           D   YTSL+  +  +
Sbjct: 594 DIITYTSLIWGACNW 608



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 168/337 (49%), Gaps = 16/337 (4%)

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           H F    +GC       MR  L      + L I D G  P+V  +N L+H LC  G +++
Sbjct: 315 HTFTPLIKGC------FMRGKLYEALDLWKLMIQD-GCEPNVVAYNTLIHGLCSNGSLEE 367

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  V D+  + G      +++ LI+G  K+ +L       + M   G RP+V TY+ +++
Sbjct: 368 ALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVD 427

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
            LCK +  D A  L+ +M   G TPN + F T I G C NGR++ A       K+++ M 
Sbjct: 428 VLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWA------MKLLERMQ 481

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
            +G  P+  TY  LLD   +    E A  + +E+  R ++ + V +  ++ GF R G + 
Sbjct: 482 GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMG 541

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS--DGHLPAVETYNA 385
           EA ++  + L  G  PD  TY  +I  +CK G  K   +L++ + S  + H P + TY +
Sbjct: 542 EALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWH-PDIITYTS 600

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           L+ G C    ++ A   LD  ++ G+ P+  T+N L+
Sbjct: 601 LIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 169/394 (42%), Gaps = 45/394 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID M +     V +    E++D G  P+V  ++ +++ LC  G ++ A  +F +   RG
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             A   +F  LI G      L E   L  +M   G  P+V  Y+ LI+GLC    L++A 
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  +M   G  PN   ++ LIDG  K      +GD+  A +  + M ++G  P+ +TYT
Sbjct: 370 QVCDQMQRSGCLPNVTTYSILIDGFAK------SGDLVGASETWNRMISHGCRPNVVTYT 423

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CK    + A  + ++M   G   + + F   I G C  G+V  A ++L  M   
Sbjct: 424 CMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGH 483

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P+  TY  ++D   +    +  F L +E+ +    P + TYN ++ G  + G +  A
Sbjct: 484 GCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEA 543

Query: 400 NMLLDTMLDLGVVPDDITYNI------------------------------------LLE 423
             L    L  G  PD ITYN                                     L+ 
Sbjct: 544 LQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIW 603

Query: 424 GHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           G C   N E+   F      +G+  ++A + +LV
Sbjct: 604 GACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 54/397 (13%)

Query: 108 NLPTVTLGFYLEILDY-GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
           NL +V LGF+  I +   +  +   + V++ +L +E ++   Q +  +    G++     
Sbjct: 53  NLSSV-LGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL 111

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           F  +ING+ +  + ++  ++   +   G +P V  Y+ L++ L  EN+      L   M 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
           + GL PN   +  L+   CKN R+D       A K+  EM   G  PD +TYT ++   C
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVD------AAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K G ++ A    +E+  R  +     + ALI G C+ G++  A ++L EM+  G+ P+  
Sbjct: 226 KAGKIDDA----RELAGR-FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV 280

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMR---------------------------------- 372
           +Y+ +I+  C +G+ +  F L  +M                                   
Sbjct: 281 SYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM 340

Query: 373 -SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN- 430
             DG  P V  YN L++GLC +G L+ A  + D M   G +P+  TY+IL++G  K G+ 
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL 400

Query: 431 ---PEDFDKLQSE--KGLVSDYACYTSLVSKSSKYRQ 462
               E ++++ S   +  V  Y C   ++ K+S + Q
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQ 437



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  ++ +G  P+V  +  ++  LCK      A  + ++    G     ++FNT I G C 
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCG 466

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              ++   +L   M+G G  P++ TY+ L++ L + N+ ++A  L  E+  R L PN V 
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + T++ G  +      AG M EA ++  +    G  PD ITY  ++  +CK+G ++ A  
Sbjct: 527 YNTVLYGFSR------AGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ 580

Query: 297 IRKEMIK-RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           + + +   +    D + +T+LI G C    + EA   L + +  G+ P+ AT+  ++ CF
Sbjct: 581 LVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 203/404 (50%), Gaps = 21/404 (5%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLG 115
           +AL++ Y   G L  A   F ++       P  GC+        LI  +         L 
Sbjct: 222 NALVLGYCRTGELRKACWLFLMM-------PLMGCQRNEYSYTILIQGLCEAKCVREALV 274

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +L +   G SP+V  F  L+  LCK G++ DA+++FD   + G+  + +++N +I G+ 
Sbjct: 275 LFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 334

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +++  ++K +ME +G  PD +TY+ LI GLC + + ++AE LL+   + G TP  V
Sbjct: 335 KLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVV 393

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            FT LI+G+C      MA    +A ++ ++M ++    D   +  L++   K+  L+ A 
Sbjct: 394 TFTNLINGYC------MAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAK 447

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  E+   G+  + + +T++I G+C+ GKV  A  +L+ M + G +P+  TY  ++   
Sbjct: 448 ELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGL 507

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K+        LL +M+ DG +P V TY  L+ G C      NA  L + M   G+ PD+
Sbjct: 508 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 567

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
             Y +L +  CK G  E+       KG+      YT+L+   SK
Sbjct: 568 HAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSK 611



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 160/307 (52%), Gaps = 10/307 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ + +N LM+ L K+ K+  A  +  +  K G+    +++ TL+ G C   + D  
Sbjct: 492 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 551

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL  +ME +G++PD + Y+ L + LCK  R ++A   +     +G+    V +TTLIDG
Sbjct: 552 FRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDG 608

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G  D A  + E  +++DE CT    PD  TY++LL   CK+  L  AL I  +M  
Sbjct: 609 FSKAGNTDFAATLIE--RMIDEGCT----PDSYTYSVLLHALCKQKRLNEALPILDQMSL 662

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RGI+    A+T LI    R GK   A+RM  EM   G KP   TYT+ I+ +CK G  + 
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+ +M  +G  P V TYN L++G    G +  A   L  M+     P+  TY +LL+
Sbjct: 723 AEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLK 782

Query: 424 GHCKHGN 430
            H   GN
Sbjct: 783 -HLLKGN 788



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 199/416 (47%), Gaps = 20/416 (4%)

Query: 57  LPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP  V    MI  Y   G L  A +CFRLL +         C  L+    RT        
Sbjct: 180 LPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACW 239

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +L +   G   + Y + +L+  LC+   +++A ++F    + G      +F  LI+G C
Sbjct: 240 LFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLC 299

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K+  + +   L   M  +G+ P V TY+A+I G  K  R++DA  +   M + G  P+D 
Sbjct: 300 KSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDW 359

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TLI G C           +EA ++++     G  P  +T+T L++G+C     + AL
Sbjct: 360 TYNTLIYGLCDQ-------KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 412

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            ++ +M+    +LD   F  LI+   +  ++ EA+ +L E+   GL P+  TYT +ID +
Sbjct: 413 RMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGY 472

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK+G       +LK M  DG  P   TYN+LM GL K  +L  A  LL  M   G++P+ 
Sbjct: 473 CKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNV 532

Query: 416 ITYNILLEGHCKHGNPEDFD------KLQSEKGLVSD---YACYTSLVSKSSKYRQ 462
           ITY  LL+G C   +  DFD      ++  + GL  D   YA  T  + K+ +  +
Sbjct: 533 ITYTTLLQGQC---DEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEE 585



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 165/327 (50%), Gaps = 12/327 (3%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           VF  L++ L K+ ++K+A+ + +E    GL    +++ ++I+G+CK+  +D    +  +M
Sbjct: 429 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 488

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E  G +P+ +TY++L+ GL K+ +L  A  LL +M + G+ PN + +TTL+ G C     
Sbjct: 489 ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH-- 546

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
               D   A ++ + M  NGL PD+  Y +L D  CK G  E A      ++++G+ L  
Sbjct: 547 ----DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTK 599

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V +T LI GF + G    A  ++  M+  G  PD  TY++++   CK         +L +
Sbjct: 600 VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQ 659

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G    +  Y  L++ + + G+  +A  + + M   G  P   TY + +  +CK G 
Sbjct: 660 MSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR 719

Query: 431 PEDFDKL---QSEKGLVSDYACYTSLV 454
            ED + L      +G+  D   Y  L+
Sbjct: 720 LEDAEDLILKMEREGVAPDVVTYNILI 746



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 22/326 (6%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++D G +P  Y ++VL+H LCK+ ++ +A  + D+   RG+  T  ++  LI+   +   
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            D   R+ + M  SG +P   TY+  IN  CKE RL+DAE L+ +M   G+ P+ V +  
Sbjct: 685 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 744

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL----------------D 283
           LIDG    G ID A      +++V   C     P+  TY +LL                 
Sbjct: 745 LIDGCGHMGYIDRA--FSTLKRMVGASC----EPNYWTYCLLLKHLLKGNLAYVRSVDTS 798

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
           G     +L+    + + M+K G+      +++LI+GFC+ G++ EA  +L  M   GL P
Sbjct: 799 GMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSP 858

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           ++  YT++I C C     +     +  M   G  P +E+Y  L+ GLC  G  +    L 
Sbjct: 859 NEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHG 429
             +L+LG   D++ + IL +G  K G
Sbjct: 919 CDLLELGYNHDEVAWKILNDGLLKAG 944



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 197/438 (44%), Gaps = 24/438 (5%)

Query: 20  HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAI 79
           H   S A  LLHL+  ++       L  S+L    T               D+    DAI
Sbjct: 88  HTADSHAA-LLHLLSRRRAPAQYERLVVSMLNCSDTA-------------EDMRVSADAI 133

Query: 80  QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139
           Q  R        +  +     +  + R ++       Y +++  G  P    +N ++   
Sbjct: 134 QAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSY 193

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           CKEG +  A   F    + GL     + N L+ G+C+   L +   L  +M   G + + 
Sbjct: 194 CKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNE 253

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
           Y+Y+ LI GLC+   + +A +L   M   G +PN   FT LI G CK+GR+   GD   A
Sbjct: 254 YSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV---GD---A 307

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
           R + D M  NG+ P  +TY  ++ G+ K G +  AL I++ M K G   D+  +  LI G
Sbjct: 308 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYG 367

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C   K  EAE +L   +K G  P   T+T +I+ +C         R+  +M S      
Sbjct: 368 LC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 426

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDK 436
           ++ +  L+N L K  +LK A  LL+ +   G+VP+ ITY  +++G+CK G  +   +  K
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 437 LQSEKGLVSDYACYTSLV 454
           +    G   +   Y SL+
Sbjct: 487 MMERDGCQPNAWTYNSLM 504



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 145/323 (44%), Gaps = 29/323 (8%)

Query: 91  RIPARGCRC-------LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++  RG +C       LID M+R          Y E+   G+ PS   + V ++  CKEG
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 718

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           +++DA+ +  +  + G+    V++N LI+G      +D  F     M G+   P+ +TY 
Sbjct: 719 RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYC 778

Query: 204 ALINGLCKEN----------------RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            L+  L K N                 LD    LL  M + GL P    +++LI G CK 
Sbjct: 779 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 838

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR++      EA  ++D MC  GL+P++  YT+L+   C     E AL     M + G +
Sbjct: 839 GRLE------EACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQ 892

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
               ++  L+ G C  G   + + +  ++L++G   D+  + ++ D   K G     F++
Sbjct: 893 PQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQM 952

Query: 368 LKEMRSDGHLPAVETYNALMNGL 390
           L  M       + +TY  + N +
Sbjct: 953 LSIMEKRYCCISSQTYALVTNKM 975


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 195/400 (48%), Gaps = 30/400 (7%)

Query: 58  PGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P +V ++ +M  +  +G +D A   F L+ K+     +     L+  +         LGF
Sbjct: 269 PSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGF 328

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
             ++  +G  P V  +N L       G +  A+ V  +   +GL+   V++ TLI GHC+
Sbjct: 329 TDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQ 388

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             N++E  +L+      G + +V  Y+ L++ LCK  R+++A  L  EM    L P+ ++
Sbjct: 389 MGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIV 448

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           ++ LI G CK G +  A                             G++ EAR   D   
Sbjct: 449 YSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWT 508

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
              L  D + Y I++DG+ +   +  A+ +  +MI+RGI    V F  LI+GFCR G ++
Sbjct: 509 RMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLM 568

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           EA +ML  +   GL P   TYT +++ +C+ G+ +  F  L EM ++  +P   TY  L+
Sbjct: 569 EARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLI 628

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            GLC+  ++  +  LL+ M   G++PD +TYN +++  CK
Sbjct: 629 KGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 228/455 (50%), Gaps = 19/455 (4%)

Query: 10  YSTMVHFLVAHKMHSQAR-----DLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLD 63
           +S    F+V+H +  + R      ++  ++  +G+GS++ +   +LE  R     GLV D
Sbjct: 115 HSIFSQFVVSHILAGKGRFKELDSVIKNLIVDQGLGSASIICDLLLEKFRNWDSNGLVWD 174

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
            L   Y     + DA+     ++   F+        L+  M  T+   +    Y EI   
Sbjct: 175 MLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLHNMRHTD---IMWDVYNEIKVS 231

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G   S    ++L+H LC++ K++DA + F     + +  + VS NT+++  CK   +D  
Sbjct: 232 GAPQSECTTSILIHGLCEQSKLEDA-ISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVA 290

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                +M  +G+  D ++Y+ L++GLC    +D+A     +M + G+ P+ V + TL  G
Sbjct: 291 RSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKG 350

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                   + G M  ARK+V +M   GLNPD +TYT L+ G C+ G++E AL +R+E + 
Sbjct: 351 FL------LLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLS 404

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG +L+ + +  L+S  C+ G++ EA  +  EM  + L+PD   Y+++I   CK G  + 
Sbjct: 405 RGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQR 464

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            ++L ++MR     P      A++ GL K+G +  A    DT   + ++ D + YNI+++
Sbjct: 465 AYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMID 524

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G+ +     +  +L     E+G+      + +L++
Sbjct: 525 GYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLIN 559



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 186/380 (48%), Gaps = 46/380 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-- 176
           E L  G+  +V  +N+L+  LCK G+I++A  +FDE     L    + ++ LI+G CK  
Sbjct: 401 ETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEG 460

Query: 177 ----AKNLDEGFRLK----------SVMEG-------------------SGMRPDVYTYS 203
               A  L E  RLK          +V+ G                     +  DV  Y+
Sbjct: 461 FVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYN 520

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +I+G  + + + +A  L ++M ERG+TP+ V F TLI+G C+ G      D+ EARK++
Sbjct: 521 IMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRG------DLMEARKML 574

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           + +   GL P  +TYT L++ +C+ G+++       EM    +   +V +T LI G CR 
Sbjct: 575 EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            K+ E+ ++L  M   GL PD  TY  +I CFCK  +     +L   M      P   TY
Sbjct: 635 NKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTY 694

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQS 439
             L+N LC  G LK+ + ++ ++ D  +    +TY  +++ HC  G        F+++ +
Sbjct: 695 KVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLA 754

Query: 440 EKGLVSDYACYTSLVSKSSK 459
            KG V     Y++++++  K
Sbjct: 755 -KGFVISIRDYSAVINRLCK 773



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 152/320 (47%), Gaps = 9/320 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V ++N+++    +   I +A  ++ +  +RG+  + V+FNTLING C+  +L E  ++  
Sbjct: 516 VVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLE 575

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V+   G+ P V TY+ L+N  C+   + +    LHEM    + P  V +T LI G C+  
Sbjct: 576 VIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQN 635

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +      M E+ ++++ M   GL PD +TY  ++  FCK  ++  AL +   M+    + 
Sbjct: 636 K------MHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDP 689

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V +  LI+  C  G + + +RM+  +    +     TY  +I   C  G         
Sbjct: 690 TQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYF 749

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M + G + ++  Y+A++N LCK G +  A      ML  GV PD      +L    + 
Sbjct: 750 NQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQ 809

Query: 429 GNPE---DFDKLQSEKGLVS 445
           GN     +F  +  + G +S
Sbjct: 810 GNNSSVFEFLAMVVKSGFIS 829



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 176/384 (45%), Gaps = 65/384 (16%)

Query: 100 LIDRMMRTNLPTVTLGF-YLEILDYGYSPSVYVFNVLMHKLCKEGKIK------------ 146
           ++DR+ RT  P V + F Y  I +YG+  S++   V+ H L  +G+ K            
Sbjct: 88  VLDRL-RTLKPDVAVAFFYFLINEYGFRHSIFSQFVVSHILAGKGRFKELDSVIKNLIVD 146

Query: 147 -----------------------------------------DAQMVFDEFGKRGLHATAV 165
                                                    DA  V  +       A+  
Sbjct: 147 QGLGSASIICDLLLEKFRNWDSNGLVWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVP 206

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N+L++     ++ D  + + + ++ SG      T S LI+GLC++++L+DA   LH+ 
Sbjct: 207 TYNSLLHN---MRHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD- 262

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             + + P+ V   T++   CK G ID+      AR     M  NGL  D  +Y ILL G 
Sbjct: 263 SNKVVGPSIVSINTIMSKFCKVGLIDV------ARSFFCLMVKNGLLHDSFSYNILLHGL 316

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C  G ++ AL    +M K G+E D V +  L  GF   G +  A +++++ML  GL PD 
Sbjct: 317 CVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDL 376

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TYT +I   C+ G+ +   +L +E  S G    V  YN L++ LCK G+++ A  L D 
Sbjct: 377 VTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDE 436

Query: 406 MLDLGVVPDDITYNILLEGHCKHG 429
           M  L + PD I Y+IL+ G CK G
Sbjct: 437 METLRLEPDFIVYSILIHGLCKEG 460



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 146/307 (47%), Gaps = 29/307 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID  +R +     +  Y ++++ G +PSV  FN L++  C+ G + +A+ + +    +G
Sbjct: 522 MIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKG 581

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  + V++ TL+N +C+  N+ E F     ME + + P   TY+ LI GLC++N++ ++ 
Sbjct: 582 LVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESL 641

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            LL  M  +GL P+ V + T+I   CK   I  A                          
Sbjct: 642 QLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINAL 701

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              GD+K+  ++V  +    +   K+TY  ++   C +G +  AL    +M+ +G  +  
Sbjct: 702 CIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISI 761

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             ++A+I+  C+ G + EA+     ML  G+ PD      V++ F + G+  + F  L  
Sbjct: 762 RDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAM 821

Query: 371 MRSDGHL 377
           +   G +
Sbjct: 822 VVKSGFI 828


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 186/341 (54%), Gaps = 16/341 (4%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNLD 181
           +G     Y +N L++ L   G+ +DA  +F+ + + GL++  V SFN +I G C+  NL 
Sbjct: 40  FGCRIEWYAYNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQ 99

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTL 240
           +   L   M   G  PD  T + L++GLC+  +++    +L  +   G+  PN V +T++
Sbjct: 100 KALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSV 159

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G+CK GR      MK+A  + ++M  +G  P+ +TY +L++G+ K  D+ESA+ +  +
Sbjct: 160 ISGYCKAGR------MKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQ 213

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +I      D V F +LI G+CR G++ +A R+  EM +  ++P+  T++++I   C    
Sbjct: 214 LILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNR 273

Query: 361 TKTGFRLLKE--MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           +     LL+E  MR+D  +P    YN +++ LCK G++  AN+++  M + G  PD  TY
Sbjct: 274 SAEALSLLRELNMRAD-IVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTY 332

Query: 419 NILLEGHCKHGN-PED---FDKLQSEKGLVSDYACYTSLVS 455
            IL+ GHC  G  PE    F K+  E G   D     S +S
Sbjct: 333 TILIIGHCMKGRIPEAVTLFHKM-VETGCRPDNITINSFIS 372



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 168/324 (51%), Gaps = 8/324 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   I D  YSP V+ FNV++  +C+ G ++ A  + +   + G     ++ N L++G C
Sbjct: 69  FESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLC 128

Query: 176 KAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           + K +++G  +   ++  G+  P+V TY+++I+G CK  R+ DA  + ++M + G  PN 
Sbjct: 129 RVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNT 188

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +  LI+G+ K      A DM+ A ++  ++  +   PD +T+  L+DG+C+ G L+ A
Sbjct: 189 VTYNVLINGYGK------ALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDA 242

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVID 353
           + I  EM +  I+ +   F+ +I   C   +  EA  +LRE+ ++  + P    Y  +ID
Sbjct: 243 MRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIID 302

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK G       ++ +M   G  P   TY  L+ G C  G++  A  L   M++ G  P
Sbjct: 303 ILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRP 362

Query: 414 DDITYNILLEGHCKHGNPEDFDKL 437
           D+IT N  +    K G P +  ++
Sbjct: 363 DNITINSFISCVLKAGMPNEVHQI 386



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 144/283 (50%), Gaps = 9/283 (3%)

Query: 167 FNTLINGHC-KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           F + + G C  A  LD    L +     G R + Y Y+ L+N L    R  DA  L    
Sbjct: 13  FFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALFESW 72

Query: 226 CERGLTPNDVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
            + GL   DV  F  +I G C+       G++++A ++V+ M   G +PD IT  IL+DG
Sbjct: 73  IQDGLYSPDVWSFNVVIKGVCR------VGNLQKALELVERMTEFGCSPDTITQNILVDG 126

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVA-FTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            C+   +    ++ + + + G+ + NV  +T++ISG+C+ G++ +A  +  +ML+ G +P
Sbjct: 127 LCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRP 186

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           +  TY ++I+ + K  D ++  R+  ++      P V T+N+L++G C+ GQL +A  + 
Sbjct: 187 NTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIW 246

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
             M    + P+  T++I++   C      +   L  E  + +D
Sbjct: 247 MEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRAD 289



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
               Y ++L  G  P+   +NVL++   K   ++ A  ++ +          V+FN+LI+
Sbjct: 172 AFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLID 231

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LT 231
           G+C+   LD+  R+   M    ++P+VYT+S +I+ LC +NR  +A  LL E+  R  + 
Sbjct: 232 GYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIV 291

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P   I+  +ID  CK G++D      EA  IV +M   G +PDK TYTIL+ G C +G +
Sbjct: 292 PQTFIYNPIIDILCKGGKVD------EANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRI 345

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
             A+ +  +M++ G   DN+   + IS   + G   E  +++
Sbjct: 346 PEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQIM 387



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 97  CRC-LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           CRC  +D  MR          ++E+  +   P+VY F++++H LC + +  +A  +  E 
Sbjct: 234 CRCGQLDDAMR---------IWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLREL 284

Query: 156 GKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             R  +      +N +I+  CK   +DE   + + ME  G  PD YTY+ LI G C + R
Sbjct: 285 NMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGR 344

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           + +A  L H+M E G  P+++   + I    K G
Sbjct: 345 IPEAVTLFHKMVETGCRPDNITINSFISCVLKAG 378


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+     N          +IL  G  P    F  L+  LC EG+I +A  +FD+    G
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEG 174

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V + TLING CK  +     RL   ME    +PDV  Y  LI+ LCK+ +   A 
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAF 234

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  +G++PN V   +L+   C        G+ K    +++EM  + + P+ I+ T
Sbjct: 235 NLFSEMITKGISPNIVTCNSLVYALCN------LGEWKHVNTLLNEMVDSKIMPNAISLT 288

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CKEG +  A D+   M + G+E D V +TALI G C   ++ EA ++   M+  
Sbjct: 289 TVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHK 348

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  P+  +Y  +I+ +CK         L +EM     +P   TYN L++GLC  G+L++A
Sbjct: 349 GCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDA 408

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             L   M+  G +PD +TY ILL+  CK+
Sbjct: 409 IALFREMVACGQIPDLVTYRILLDYLCKN 437



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 175/358 (48%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + +    T     + E++  G SP++   N L++ LC  G+ K    + +E     
Sbjct: 220 LIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSK 279

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +   A+S  T+++  CK   + +   +  +M  SG+ PDV TY+ALI+G C  + +D+A 
Sbjct: 280 IMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAV 339

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  PN   + TLI+G+CK  R+D      +A  + +EMC   L P+ +TY 
Sbjct: 340 KVFDMMVHKGCAPNVFSYNTLINGYCKIERMD------KAMYLFEEMCRQKLIPNTVTYN 393

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C  G L+ A+ + +EM+  G   D V +  L+   C+   + +A  +L+ +   
Sbjct: 394 TLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGS 453

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L PD   YT+VID  C+ G+ +    L   + S G  P V TYN + +GLCK G L  A
Sbjct: 454 NLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEA 513

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             L   M +     D  TYN + +G  ++       +L  E   +G   D +  T LV
Sbjct: 514 TKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLV 571



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 145/305 (47%), Gaps = 29/305 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D    P+      ++  LCKEG +  A  V D   + G+    V++  LI+GHC   
Sbjct: 274 EMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRS 333

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE  ++  +M   G  P+V++Y+ LING CK  R+D A  L  EMC + L PN V + 
Sbjct: 334 EMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYN 393

Query: 239 TLIDGHCKNGRIDMA-------------GDMKEARKIVDEMCTN---------------- 269
           TLI G C  GR+  A              D+   R ++D +C N                
Sbjct: 394 TLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGS 453

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            L+PD   YTI++DG C+ G+LE A D+   +  +G++ +   +  +  G C+ G + EA
Sbjct: 454 NLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEA 513

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            ++  EM +     D  TY  +   F +N +T    +LL+EM + G    V T   L+  
Sbjct: 514 TKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGM 573

Query: 390 LCKHG 394
           L   G
Sbjct: 574 LSDDG 578



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 148/321 (46%), Gaps = 9/321 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA   F+         + V F  ++    K K       L   M+  G+  +VYT + 
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264
           LIN  C  NR++ A  +L ++ + G  P+   FTTLI G C  G+I       EA  + D
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQI------GEALHLFD 168

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M   G  PD + Y  L++G CK G   +A+ + + M K   + D V +  LI   C+  
Sbjct: 169 KMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDR 228

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           +  +A  +  EM+  G+ P+  T   ++   C  G+ K    LL EM     +P   +  
Sbjct: 229 QQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLT 288

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK---LQSEK 441
            +++ LCK G +  A+ ++D M   GV PD +TY  L++GHC     ++  K   +   K
Sbjct: 289 TVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHK 348

Query: 442 GLVSDYACYTSLVSKSSKYRQ 462
           G   +   Y +L++   K  +
Sbjct: 349 GCAPNVFSYNTLINGYCKIER 369



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+V+ +N L++  CK  ++  A  +F+E  ++ L    V++NTLI+G C    L + 
Sbjct: 349 GCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDA 408

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G  PD+ TY  L++ LCK   LD A  LL  +    L P+  I+T +IDG
Sbjct: 409 IALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDG 468

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+      AG++++AR +   + + GL P+  TY I+  G CK G L+ A  +  EM +
Sbjct: 469 MCR------AGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDE 522

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                D   +  +  GF R  +   A ++L EML  G   D +T T+++     +G  ++
Sbjct: 523 NACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQS 582

Query: 364 GFRLLKEM 371
               L++M
Sbjct: 583 EAHKLEDM 590


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 187/346 (54%), Gaps = 11/346 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E++  G  P+V  FN L+  LC+ G  +       +  + G       + T+I+G CK 
Sbjct: 237 VEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKD 296

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            + +    + S M   G++P+V  Y+ ++ GLC   R ++AE LL EM +     +DV F
Sbjct: 297 GHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTF 356

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             L+D  C+NG +D         +++++M  +G  PD ITYT +++GFCKEG ++ A+ +
Sbjct: 357 NILVDFFCQNGLVD------RVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVML 410

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            K M   G + + +++T ++ G CR  + V+A+ ++  M++ G  P+  T+  +I+  CK
Sbjct: 411 LKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCK 470

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +    LLK+M  +G  P + +Y+ +++GL K G+ + A  LL+ M++ G+ P+ I 
Sbjct: 471 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTII 530

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           Y+ +     + G  +     FD +Q +  + SD A Y +++S   K
Sbjct: 531 YSSMASALSREGRTDKIIQMFDSIQ-DATVRSDAALYNAVISSLCK 575



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 172/367 (46%), Gaps = 44/367 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--------------------------- 159
           P+ Y +  ++  LC  G I DA  V DE   RG                           
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 160 ---LHATAVSF-----NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
              LHA   +      N +++  C+   +DEG  L   +   G  PD+ +Y+A++ GLC 
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
             R DD E L+ EM   G  PN   F TLI   C+NG  +      +  + + +M  +G 
Sbjct: 226 AKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFE------QVHEALSQMPEHGC 279

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD   Y  ++DG CK+G  E A DI   M   G++ + V +  ++ G C   +  EAE 
Sbjct: 280 TPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAED 339

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L EM +     DD T+ +++D FC+NG       LL++M   G +P V TY  ++NG C
Sbjct: 340 LLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFC 399

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYA 448
           K G +  A MLL  M   G  P+ I+Y I+L+G C+     D  +L S   ++G + +  
Sbjct: 400 KEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPV 459

Query: 449 CYTSLVS 455
            + +L++
Sbjct: 460 TFNTLIN 466



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 160/324 (49%), Gaps = 16/324 (4%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG  P+V  +N ++  LC   + ++A+ +  E  +       V+FN L++  C+   +D
Sbjct: 311 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 370

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   M   G  PDV TY+ +ING CKE  +D+A +LL  M   G  PN + +T ++
Sbjct: 371 RVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVL 430

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C+  R        +A++++  M   G  P+ +T+  L++  CK+G +E A+++ K+M
Sbjct: 431 KGLCRAER------WVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQM 484

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +  G   D ++++ +I G  + GK  EA  +L  M+  G+ P+   Y+ +     + G T
Sbjct: 485 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRT 544

Query: 362 KTGFRLLKEM-----RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
               ++   +     RSD  L     YNA+++ LCK  +   A      M+  G +P++ 
Sbjct: 545 DKIIQMFDSIQDATVRSDAAL-----YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 599

Query: 417 TYNILLEGHCKHGNPEDFDKLQSE 440
           TY IL+ G    G   +   L SE
Sbjct: 600 TYTILIRGLASEGLVREAQDLLSE 623



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 141/275 (51%), Gaps = 6/275 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++  + G     +++ T+ING CK   +DE   L   M 
Sbjct: 356 FNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMS 415

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC+  R  DA+ L+  M ++G  PN V F TLI+  CK G ++
Sbjct: 416 ACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVE 475

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  E AL++   MI +GI  + +
Sbjct: 476 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTI 529

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++ S   R G+  +  +M   +    ++ D A Y  VI   CK  +T         M
Sbjct: 530 IYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYM 589

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            S+G +P   TY  L+ GL   G ++ A  LL  +
Sbjct: 590 VSNGCMPNESTYTILIRGLASEGLVREAQDLLSEL 624



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 132/306 (43%), Gaps = 41/306 (13%)

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR------------ 214
            + LI   C A    +  R    ++ +G    V  Y+A+I G C+  +            
Sbjct: 47  LSALIRSLCAAGRTADAAR---ALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP 103

Query: 215 --------------------LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
                               + DA  +L EM  RG      +   +++  C+       G
Sbjct: 104 VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACR------GG 157

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             + A + +  +   G   D     +++   C++G ++  +++ +++   G E D V++ 
Sbjct: 158 GFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYN 217

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           A++ G C   +  + E ++ EM++VG  P+ AT+  +I   C+NG  +     L +M   
Sbjct: 218 AVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEH 277

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P +  Y  +++G+CK G  + AN +L  M   G+ P+ + YN +L+G C     E+ 
Sbjct: 278 GCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEA 337

Query: 435 DKLQSE 440
           + L +E
Sbjct: 338 EDLLAE 343



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 15/255 (5%)

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
           SALI  LC   R  DA   L      G     V +  +I G+C+ G++  A  +  A  +
Sbjct: 48  SALIRSLCAAGRTADAARALDTA---GDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVPV 104

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
                     P+  TY  ++   C  G +  AL +  EM  RG          ++   CR
Sbjct: 105 ---------PPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACR 155

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           GG    A R L+ +   G   D     +V+   C+ G    G  LL+++ S G  P + +
Sbjct: 156 GGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVS 215

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS--- 439
           YNA++ GLC   +  +   L+  M+ +G  P+  T+N L+   C++G  E   +  S   
Sbjct: 216 YNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMP 275

Query: 440 EKGLVSDYACYTSLV 454
           E G   D   Y +++
Sbjct: 276 EHGCTPDLRMYATII 290



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 6/185 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P+   FN L++ +CK+G ++ A  +  +    G     +S++T+I+G  KA  
Sbjct: 449 MIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 508

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            +E   L +VM   G+ P+   YS++ + L +E R D    +   + +  +  +  ++  
Sbjct: 509 TEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNA 568

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I   CK    D A D          M +NG  P++ TYTIL+ G   EG +  A D+  
Sbjct: 569 VISSLCKRWETDRAIDF------FAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLS 622

Query: 300 EMIKR 304
           E+  R
Sbjct: 623 ELCSR 627


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 175/388 (45%), Gaps = 64/388 (16%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P+   + +L+H LCK G I+DA  +FD+   +G+  T   +N+LING+C
Sbjct: 383 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 442

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  +LD    L S M   G+ P   +YS LI GLC+   L     L  EM ERG+  N+ 
Sbjct: 443 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 502

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
            FT LI+G CK+ ++D A                             G++++A ++ D+M
Sbjct: 503 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 562

Query: 267 CTNGLNPDKITY-----------------------------------TILLDGFCKEGDL 291
              GL PD  TY                                   T LL GF +EG  
Sbjct: 563 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRF 622

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
                +  EM  RG++LD V+FT ++    +     ++  + REM + G+KPDD  YT +
Sbjct: 623 TETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 682

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID   K  +         +M  DG+ P   T+  L+N LCK G L +A +L   ML   V
Sbjct: 683 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNV 742

Query: 412 VPDDITYNILLEGHCKHGNPEDFDKLQS 439
           +P+  TYN  L+     G+ E    L S
Sbjct: 743 LPNKFTYNCFLDYFATEGDMEKAKDLHS 770



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 192/416 (46%), Gaps = 67/416 (16%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G  + +   G   S   +NVLM+ LCK  ++++A  V +     G+ A  V++ TL+ G 
Sbjct: 242 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 301

Query: 175 CKAKNLD-----------------------------------EGFRLKSVMEGSGMRPDV 199
           C+ + L+                                   E F L   +   GM P+V
Sbjct: 302 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 361

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------ 253
           + Y+ALI+ LCK  R DDA+ L  EM  RGL PN+V +  LI   CK G I+ A      
Sbjct: 362 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 421

Query: 254 -----------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
                                  G +  AR ++  M   GL P   +Y+ L+ G C+ GD
Sbjct: 422 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 481

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           L S +++ +EM +RGI  +N  FTALI+GFC+  K+ EA R+  +M+   + P++ T+ +
Sbjct: 482 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 541

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ +C  G+ +  F+L  +M   G  P   TY +L++GLC    +  AN  +  + +  
Sbjct: 542 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 601

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQK 463
            V ++ +   LL G  + G   +   L  E   +G+  D   +T +V  + K   K
Sbjct: 602 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDK 657



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 184/373 (49%), Gaps = 12/373 (3%)

Query: 92  IPARG-CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
           +P+   C  +ID + +  L         ++ D G  P+V+ +N L+ KLCK  +  DA  
Sbjct: 323 VPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADR 382

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +F E   RGL    V++  LI+  CK   +++   L   M   G++  VY Y++LING C
Sbjct: 383 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 442

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           K+  LD A  LL  M + GLTP    ++ LI G C+N      GD+    ++  EM   G
Sbjct: 443 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN------GDLSSCMELHREMAERG 496

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +  +  T+T L++GFCK+  ++ A  +  +MI   +  + V F  +I G+C  G + +A 
Sbjct: 497 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 556

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++  +M+++GLKPD+ TY  +I   C           + ++ +   +    +  AL+ G 
Sbjct: 557 QLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGF 616

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
            + G+      L D M   GV  D +++ I++    K  + E     F +++ E+G+  D
Sbjct: 617 FREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMK-EQGVKPD 675

Query: 447 YACYTSLVSKSSK 459
              YT ++   SK
Sbjct: 676 DIFYTCMIDALSK 688



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 172/338 (50%), Gaps = 9/338 (2%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G + + Y  + ++  L K  +   A+ +FD+  + G+H     +   I  +C+++NL
Sbjct: 178 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 237

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D    L   ME  G++     Y+ L+ GLCK  R+ +A  + + M   G+T ++V + TL
Sbjct: 238 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 297

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           + G C+   ++MA       +I  +M   G  P +   + ++D   K+  +E A  +  +
Sbjct: 298 VYGFCRMEELEMA------LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 351

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +   G+  +  A+ ALI   C+  +  +A+R+ +EM   GL+P++ TY ++I   CK G 
Sbjct: 352 LGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGM 411

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +    L  +MR  G    V  YN+L+NG CK G L  A  LL  M+  G+ P   +Y+ 
Sbjct: 412 IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 471

Query: 421 LLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           L+ G C++G+     +  +  +E+G+  +   +T+L++
Sbjct: 472 LIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALIN 509



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +    L++   +EG+  +   ++DE   RG+    VSF  ++    K  + ++   L   
Sbjct: 607 FSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFRE 666

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+  G++PD   Y+ +I+ L KE  +  A     +M   G +PN V  T LI+  CK+G 
Sbjct: 667 MKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGY 726

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +        A  +  EM    + P+K TY   LD F  EGD+E A D+   M++ G    
Sbjct: 727 LG------SAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLAS 779

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V+F  LI G C+ GK+ EA  ++ ++ + G  PD  +Y+ +I   CK GD    F L  
Sbjct: 780 IVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 839

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           EM   G  P V  YN  +     HG+   A  +   M+  GV P+  TY  LL G
Sbjct: 840 EMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 894



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/503 (24%), Positives = 208/503 (41%), Gaps = 81/503 (16%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+H +  K+GM   A      +  +G  +     ++L+  Y   G LD A      + K 
Sbjct: 402 LIHALC-KRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 460

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                A     LI  + R    +  +  + E+ + G + + Y F  L++  CK+ K+ +A
Sbjct: 461 GLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 520

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +FD+     +    V+FN +I G+C   N+ + F+L   M   G++PD YTY +LI+G
Sbjct: 521 ARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISG 580

Query: 209 LC-----------------------------------KENRLDDAELLLHEMCERGLTPN 233
           LC                                   +E R  +   L  EM  RG+  +
Sbjct: 581 LCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLD 640

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V FT ++    K        D +++  +  EM   G+ PD I YT ++D   KE ++  
Sbjct: 641 LVSFTIIVYAALKQH------DKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQ 694

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL+   +M+  G   + V  T LI+  C+ G +  AE + +EML   + P+  TY   +D
Sbjct: 695 ALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLD 754

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-------------- 399
            F   GD +    L   M   GHL ++ ++N L+ GLCK G+++ A              
Sbjct: 755 YFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSP 813

Query: 400 ---------------------NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
                                  L + ML  G+ PD + YNI +     HG  +    + 
Sbjct: 814 DCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIY 873

Query: 439 S---EKGLVSDYACYTSLVSKSS 458
           +     G+  ++  Y +L+S  S
Sbjct: 874 TNMIRSGVQPNWDTYRALLSGIS 896



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 142/272 (52%), Gaps = 11/272 (4%)

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            SG+  + YT S ++  L K  +   A  L  +M + G+  ++ ++T  I  +C++  +D
Sbjct: 179 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 238

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                  AR +V  M + G+    + Y +L+ G CK   ++ A++++  M+  G+  D V
Sbjct: 239 ------GARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV 292

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  L+ GFCR  ++  A R+  +M+++G  P +A  + +ID   K    +  F L  ++
Sbjct: 293 TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKL 352

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
              G +P V  YNAL++ LCK+ +  +A+ L   M   G+ P+++TY IL+   CK G  
Sbjct: 353 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 412

Query: 432 ED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           ED    FDK++ +KG+      Y SL++   K
Sbjct: 413 EDALCLFDKMR-DKGIKVTVYPYNSLINGYCK 443


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 192/392 (48%), Gaps = 31/392 (7%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  D ++  + D GF+D+A     ++R   F          +  ++R            E
Sbjct: 282 VTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLRE 341

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAK 178
           +   G  P+ Y +N+++  LCKEGK  DA+ V + F + G+ +   V++ +L++ +C   
Sbjct: 342 MAHEGIQPNSYTYNIIVSGLCKEGKAFDARRV-ENFIRSGVMSPDVVTYTSLLHAYCSKG 400

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N+    R+   M   G  P+ +TY+ L+  L +  R  +AE LL  M E+G + +     
Sbjct: 401 NIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCN 460

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-----------------------PDK 275
            +IDG C+N R+D+A D      IVD M   G                         PD+
Sbjct: 461 IIIDGLCRNSRLDVAMD------IVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQ 514

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           ITY+IL+   CKEG  + A     EMI + I  D+V +   I G+C+ GK   A ++LR+
Sbjct: 515 ITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRD 574

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M K G  P   TY ++I  F +   ++   +L+ EM+  G  P V TYN+L+   C+ G 
Sbjct: 575 MEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGM 634

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           +  A  LLD ML   +VP+  ++++L++ +CK
Sbjct: 635 VNKAMPLLDEMLQNELVPNITSFDLLIKAYCK 666



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 187/382 (48%), Gaps = 27/382 (7%)

Query: 78  AIQCFRLLRKHYFRIPARGC---RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           AI  FR LR      P       R ++  +  + L  V    Y ++L  G  P V+  N+
Sbjct: 92  AIPAFRSLRALTSAPPPTTPVYNRLILAALRESRLDLVE-ALYKDLLLSGAQPDVFTRNL 150

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+  LC  G+++ AQ VFD    R       SF  L  G+C+A    +  ++   M    
Sbjct: 151 LLQALCDAGRMELAQRVFDAMPAR----NEFSFGILARGYCRAGRSIDALKVLDGMPSM- 205

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
              ++   + ++ G CKE  +++AE L+  M  +GL PN V F   I   CK GR+    
Sbjct: 206 ---NLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRV---- 258

Query: 255 DMKEARKIVDEM---CTNGL-NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              +A +I  +M     +GL  PD++T+ ++L GFC  G ++ A  +  ++++ G  L  
Sbjct: 259 --LDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEA-RVLVDIMRCGGFLRR 315

Query: 311 V-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           V ++   +SG  R G+V EA+ +LREM   G++P+  TY +++   CK G      R+  
Sbjct: 316 VESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVEN 375

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            +RS    P V TY +L++  C  G +  AN +LD M   G  P+  TYN+LL+   + G
Sbjct: 376 FIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAG 435

Query: 430 NPEDFDKL---QSEKGLVSDYA 448
              + ++L    +EKG   D A
Sbjct: 436 RTTEAERLLERMNEKGYSLDTA 457



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 156/329 (47%), Gaps = 29/329 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+   V  +N  +  L + G++ +AQ +  E    G+   + ++N +++G CK     + 
Sbjct: 311 GFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDA 370

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+++ +    M PDV TY++L++  C +  +  A  +L EM ++G  PN   +  L+  
Sbjct: 371 RRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQS 430

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             + GR        EA ++++ M   G + D     I++DG C+   L+ A+DI   M +
Sbjct: 431 LWRAGRT------TEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWE 484

Query: 304 RGIEL-----------------------DNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
            G                          D + ++ LIS  C+ G+  EA++ L EM+   
Sbjct: 485 EGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKD 544

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + PD   Y   I  +CK+G T    ++L++M   G  P+  TYN L+ G  +  + +   
Sbjct: 545 ISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIM 604

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            L+  M + G+ P+ +TYN L++  C+ G
Sbjct: 605 KLMSEMKEKGISPNVMTYNSLIKSFCQQG 633



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 165/390 (42%), Gaps = 59/390 (15%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA----VSFNTLINGHCKAKN 179
           G +P+V  FN  +  LCK G++ DA  +F +  +   H       V+F+ +++G C A  
Sbjct: 237 GLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGF 296

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +DE   L  +M   G    V +Y+  ++GL +  R+ +A+ LL EM   G+ PN   +  
Sbjct: 297 VDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNI 356

Query: 240 LIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNG 270
           ++ G CK G+   A                             G++  A +I+DEM   G
Sbjct: 357 IVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKG 416

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
             P+  TY +LL    + G    A  + + M ++G  LD      +I G CR  ++  A 
Sbjct: 417 CAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAM 476

Query: 331 RMLREMLKVGLK-----------------------PDDATYTMVIDCFCKNGDTKTGFRL 367
            ++  M + G                         PD  TY+++I   CK G      + 
Sbjct: 477 DIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKK 536

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L EM      P    Y+  ++G CKHG+   A  +L  M   G  P   TYN+L+ G  +
Sbjct: 537 LLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEE 596

Query: 428 HGNPEDFDKLQS---EKGLVSDYACYTSLV 454
               E+  KL S   EKG+  +   Y SL+
Sbjct: 597 KHKSEEIMKLMSEMKEKGISPNVMTYNSLI 626



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 28/290 (9%)

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           S   P    Y+ LI    +E+RLD  E L  ++   G  P+      L+   C  GR+++
Sbjct: 104 SAPPPTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMEL 163

Query: 253 AGDMKEARKIVDEM---------CTNGLNPDK------------ITYTILLDGFCKEGDL 291
           A  + +A    +E          C  G + D             +    ++ GFCKEG +
Sbjct: 164 AQRVFDAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVVCNTVVAGFCKEGLV 223

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM---LKVGL-KPDDAT 347
           E A  + + M  +G+  + V F A IS  C+ G+V++A R+ ++M    + GL +PD  T
Sbjct: 224 EEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVT 283

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           + +++  FC  G       L+  MR  G L  VE+YN  ++GL ++G++  A  LL  M 
Sbjct: 284 FDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMA 343

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQS--EKGLVS-DYACYTSLV 454
             G+ P+  TYNI++ G CK G   D  ++++    G++S D   YTSL+
Sbjct: 344 HEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLL 393



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 141/320 (44%), Gaps = 48/320 (15%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +++L+  LCKEG+  +A+    E   + +   +V ++T I+G+CK        ++
Sbjct: 512 PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKV 571

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              ME  G  P   TY+ LI G  ++++ ++   L+ EM E+G++PN + + +LI   C+
Sbjct: 572 LRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQ 631

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI--------- 297
            G ++      +A  ++DEM  N L P+  ++ +L+  +CK  D  SA  +         
Sbjct: 632 QGMVN------KAMPLLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVFDAALRTCG 685

Query: 298 RKEMI-----------KRGIELDNV--------------AFTALISGFCRGGKVVEAERM 332
           +KE++            + IE  N+               +  +ISG C  G+V  A  +
Sbjct: 686 QKEVLYCLMCTELTTYGKWIEAKNILEMALEMRVSIQSFPYKQIISGLCEVGEVDHAHSL 745

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM-----RSDGHLPAVETYNALM 387
           L+ ++      D A +  VID     G  +    L  +M     R+DG          + 
Sbjct: 746 LKLLIAKRHLFDPAAFMPVIDALGDRGKKQDVDMLSAKMMEMADRNDG---LGTDSGKIT 802

Query: 388 NGLCKHGQLKNANMLLDTML 407
            G CKH   +N      T+L
Sbjct: 803 PGSCKHEHDRNGESDWRTLL 822



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/221 (18%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +PS   +N+L+    ++ K ++   +  E  ++G+    +++N+LI   C+   +++ 
Sbjct: 579 GCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKA 638

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M  + + P++ ++  LI   CK      A+++  +   R     +V++  +   
Sbjct: 639 MPLLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVF-DAALRTCGQKEVLYCLMCT- 696

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                 +   G   EA+ I++      ++     Y  ++ G C+ G+++ A  + K +I 
Sbjct: 697 -----ELTTYGKWIEAKNILEMALEMRVSIQSFPYKQIISGLCEVGEVDHAHSLLKLLIA 751

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           +    D  AF  +I      GK  + + +  +M+++  + D
Sbjct: 752 KRHLFDPAAFMPVIDALGDRGKKQDVDMLSAKMMEMADRND 792


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 193/366 (52%), Gaps = 10/366 (2%)

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           +++V    G   DA+Q F  +  HY   P AR    L+      NL   +     +  ++
Sbjct: 153 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 212

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNLDE 182
           G     Y +N LM  L   G++ D   +F+ + +  +++  V SFN +I G C+   + +
Sbjct: 213 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQK 272

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLI 241
              L   M   G  PD  T++ +++GLC+ N +     +L  +   G+  PN V FT++I
Sbjct: 273 ALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 332

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G+CK      AG +++A  + ++M  +G+ P+ +TY +L++G+ K GDL SA+++ ++M
Sbjct: 333 SGYCK------AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 386

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            +     D V F++LI G+CR G++ +A R+  +M +  ++P+  T++++I   CK   +
Sbjct: 387 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRS 446

Query: 362 KTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                LL E+     + P    YN +++ LCK G++  AN++   M + G  PD  TY I
Sbjct: 447 DEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTI 506

Query: 421 LLEGHC 426
           L+ G+C
Sbjct: 507 LIIGYC 512



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 166/326 (50%), Gaps = 9/326 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL-DEGF 184
           +PS +    ++  LC+ G+  DA  +FD+      ++    F + +   C   NL D   
Sbjct: 144 TPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASA 203

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDG 243
            L S     G R + Y Y+ L++ L    R+ D   L     + R  +P+   F  +I G
Sbjct: 204 TLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKG 263

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+ G++      ++A ++V+ M   G +PD +T+ I++DG C+  ++    ++ + + +
Sbjct: 264 VCRVGQV------QKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQR 317

Query: 304 RGIELDNVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            G+ + NV  FT++ISG+C+ GK+ +A  +  +M+  G+ P+  TY ++I+ + K GD  
Sbjct: 318 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 377

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           +   + ++M      P V T+++L++G C+ GQL +A  +   M    + P+  T++I++
Sbjct: 378 SAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIII 437

Query: 423 EGHCKHGNPEDFDKLQSEKGLVSDYA 448
              CK    ++   L +E  L  D A
Sbjct: 438 HSLCKQNRSDEAICLLNELNLRPDIA 463



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  F  ++   CK GK++DA  V+++    G+    V++N LING+ K  +L     +
Sbjct: 323 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 382

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M      PDV T+S+LI+G C+  +LDDA  +  +M +  + PN   F+ +I   CK
Sbjct: 383 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 442

Query: 247 NGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             R D      EA  +++E+     + P    Y  ++D  CK G ++ A  IRK M ++G
Sbjct: 443 QNRSD------EAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKG 496

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
              D   +T LI G+C   ++ EA     EM++ G  PD  T    I C  K G
Sbjct: 497 CRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 550



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  Y +++  G  P+   +NVL++   K G +  A  V+ +  +       V+F++LI+
Sbjct: 344 AMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLID 403

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LT 231
           G+C+   LD+  R+ S M    ++P+VYT+S +I+ LCK+NR D+A  LL+E+  R  + 
Sbjct: 404 GYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIA 463

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P   I+  +ID  CK G++D      EA  I   M   G  PDK TYTIL+ G+C +  +
Sbjct: 464 PQAFIYNPVIDVLCKCGKVD------EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRI 517

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             A+    EM++ G   D++     IS   + G   E + ++R
Sbjct: 518 SEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMR 560


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 216/431 (50%), Gaps = 29/431 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE---TRGTHLPGLVLDALM 66
           YS ++ +       ++AR++   +V ++G    A  + ++L    T+G  +    L ALM
Sbjct: 228 YSLLIDYYCKIGRCTEARNIFDSMV-RRGQNPDAYTYRTLLHGYATKGALVDMHDLLALM 286

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
           I         D I     L  H F I       LI    +       +  ++E+   G+S
Sbjct: 287 I--------QDGIP----LEDHVFNI-------LIRAYAKNETLDKAMTAFIEMRQKGFS 327

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  +  ++  LCK G+++DA   F +    GL    ++F +LI+G C      +  +L
Sbjct: 328 PNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKL 387

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G+ P+    + +++ LCKE R+ +A     ++   G+ P+ V +T LIDG+C 
Sbjct: 388 SFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCL 447

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G++D      E+ K++  M + GL PD +TY+ LL+G+CK G ++ AL + +EM  + +
Sbjct: 448 DGKMD------ESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDV 501

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + + + +  ++ G    G+VV A     +++  G++    TY +V+   C+N       R
Sbjct: 502 KPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALR 561

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + + +RS      V T+N ++ GL K G++ +A  L   +L  G+VPD I Y ++++ H 
Sbjct: 562 MFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHI 621

Query: 427 KHGNPEDFDKL 437
           + G  E+ D+L
Sbjct: 622 EEGLLEESDEL 632



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 166/301 (55%), Gaps = 6/301 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +++L+   CK G+  +A+ +FD   +RG +  A ++ TL++G+     L + 
Sbjct: 220 GLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDM 279

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L ++M   G+  + + ++ LI    K   LD A     EM ++G +PN V +TT+ID 
Sbjct: 280 HDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDI 339

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR++      +A     +M + GL+PD IT+T L+ G C  G+ +    +  EMI 
Sbjct: 340 LCKAGRVE------DAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMIN 393

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RGI  + +    ++   C+ G+V+EA     +++ VG+KPD  +YT++ID +C +G    
Sbjct: 394 RGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDE 453

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +LL  M S G  P   TY+AL+NG CK+G++ +A  L   M    V P+ ITYNI+L 
Sbjct: 454 SIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILH 513

Query: 424 G 424
           G
Sbjct: 514 G 514



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 184/366 (50%), Gaps = 6/366 (1%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +A++    D G L++A++  + +     +        LID   +    T     +  ++ 
Sbjct: 194 EAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVR 253

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +P  Y +  L+H    +G + D   +     + G+      FN LI  + K + LD+
Sbjct: 254 RGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDK 313

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
                  M   G  P+V TY+ +I+ LCK  R++DA     +M   GL+P+ + FT+LI 
Sbjct: 314 AMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIH 373

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C        G+ K+  K+  EM   G++P+ I    ++D  CKEG +  A D   ++I
Sbjct: 374 GLCT------IGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQII 427

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G++ D V++T LI G+C  GK+ E+ ++L  M+ +GL+PD+ TY+ +++ +CKNG   
Sbjct: 428 HVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVD 487

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L +EM S    P   TYN +++GL   G++  A      ++D G+     TYNI+L
Sbjct: 488 DALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVL 547

Query: 423 EGHCKH 428
            G C++
Sbjct: 548 GGLCEN 553



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 168/358 (46%), Gaps = 30/358 (8%)

Query: 113 TLGFYLEILDYGYSPSVYVFN----VLMHKLCKEGKIKDAQMVFDEF------GKRGLHA 162
            L  + E+L    S SV+ FN    V+ H      +   A +    F      G   L  
Sbjct: 33  ALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMAQVGVNKLAT 92

Query: 163 TAVSFNTLINGHCKAKNLD-------EGFRLKSVM---EGSGMRPDVYTYSALINGLCKE 212
            A +F  LI   C    LD        G R    M   +G    P+V +Y+ +INGL KE
Sbjct: 93  DACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKE 152

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA----------GDMKEARKI 262
             +D A  L HEM  +G  PN V + ++IDG CK   +D A          G ++EA ++
Sbjct: 153 GEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRL 212

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
           + +M   GL PD +TY++L+D +CK G    A +I   M++RG   D   +  L+ G+  
Sbjct: 213 LKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYAT 272

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            G +V+   +L  M++ G+  +D  + ++I  + KN           EMR  G  P V T
Sbjct: 273 KGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVT 332

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           Y  +++ LCK G++++A      M+  G+ PD IT+  L+ G C  G  +  +KL  E
Sbjct: 333 YTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFE 390



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 6/286 (2%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+++ G  P+    N +M  LCKEG++ +A   FD+    G+    VS+  LI+G+C  
Sbjct: 389 FEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLD 448

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +DE  +L   M   G+RPD  TYSAL+NG CK  R+DDA  L  EM  + + PN + +
Sbjct: 449 GKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITY 508

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             ++ G    GR+  A +     KIVD     G+N    TY I+L G C+   ++ AL +
Sbjct: 509 NIILHGLFHAGRVVAAREFY--MKIVDSGIQLGIN----TYNIVLGGLCENSFVDEALRM 562

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            + +  +  +L+   F  +I G  + G++ +A+ +   +L  GL PD   Y ++I    +
Sbjct: 563 FQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIE 622

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
            G  +    L   M  +G      T NA++  L + G ++ A   L
Sbjct: 623 EGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYL 668



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 81/191 (42%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL+  Y   G +DDA+  +R +     +  A     ++  +           FY++I+D 
Sbjct: 475 ALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDS 534

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G    +  +N+++  LC+   + +A  +F     +       +FN +I G  K   + + 
Sbjct: 535 GIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDA 594

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S +  SG+ PD   Y  +I    +E  L++++ L   M + G T N      ++  
Sbjct: 595 KSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRK 654

Query: 244 HCKNGRIDMAG 254
             + G +  AG
Sbjct: 655 LLEKGDVRRAG 665



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           +   V  FN+++  L K G+I DA+ +F      GL   A+ +  +I  H +   L+E  
Sbjct: 571 FQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESD 630

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L   ME +G   +  T +A++  L ++  +  A   L ++ E+
Sbjct: 631 ELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDEK 674


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 162/313 (51%), Gaps = 9/313 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+   +N L+H LC +GK+  A  + +           V++ TLING  K +   + 
Sbjct: 287 GCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDA 346

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL S ME  G   + + YS LI+GL KE + ++A  L  +M E+G  PN V+++ L+DG
Sbjct: 347 VRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDG 406

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C+ G+ +      EA++I++ M  +G  P+  TY+ L+ GF K G  E A+ + KEM K
Sbjct: 407 LCREGKPN------EAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDK 460

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G   +   ++ LI G C  G+V EA  +  +ML +G+KPD   Y+ +I   C  G    
Sbjct: 461 TGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDA 520

Query: 364 GFRLLKEM---RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
             +L  EM         P V TYN L++GLC    +  A  LL++MLD G  PD IT N 
Sbjct: 521 ALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNT 580

Query: 421 LLEGHCKHGNPED 433
            L    +  N  D
Sbjct: 581 FLNTLSEKSNSCD 593



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  Y +  LM  LCKE +I +A ++ DE    G   + V +N LI+G CK  +L    +L
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  P+  TY+ LI+GLC + +LD A  LL  M      PNDV + TLI+G  K
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R        +A +++  M   G + ++  Y++L+ G  KEG  E A+ + ++M ++G 
Sbjct: 340 QRR------ATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGC 393

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + + V ++ L+ G CR GK  EA+ +L  M+  G  P+  TY+ ++  F K G  +   +
Sbjct: 394 KPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           + KEM   G       Y+ L++GLC  G++K A M+   ML +G+ PD + Y+ +++G C
Sbjct: 454 VWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513

Query: 427 KHGNPEDFDKLQSE 440
             G+ +   KL  E
Sbjct: 514 GIGSMDAALKLYHE 527



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 198/421 (47%), Gaps = 14/421 (3%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           S  +F S  +     L    L +++  Y + G  D   +    +R     I  R    + 
Sbjct: 60  SEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVF 119

Query: 102 DRMMRTNLPTVTLGFYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
               + +LP   +  +  ++D +    SV  FN +++ +  EG        +D      +
Sbjct: 120 RAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNM 179

Query: 161 H----ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +       +SFN +I   CK + +D    +   M      PD YTY  L++GLCKE R+D
Sbjct: 180 NMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERID 239

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A LLL EM   G +P+ VI+  LIDG CK G      D+    K+VD M   G  P+++
Sbjct: 240 EAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG------DLTRVTKLVDNMFLKGCVPNEV 293

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+ G C +G L+ A+ + + M+      ++V +  LI+G  +  +  +A R+L  M
Sbjct: 294 TYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSM 353

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G   +   Y+++I    K G  +    L ++M   G  P +  Y+ L++GLC+ G+ 
Sbjct: 354 EERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKP 413

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A  +L+ M+  G +P+  TY+ L++G  K G  E+  ++  E    G   +  CY+ L
Sbjct: 414 NEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVL 473

Query: 454 V 454
           +
Sbjct: 474 I 474



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 164/370 (44%), Gaps = 41/370 (11%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++H L       +A  LL  +VS K + +          T GT + GLV       
Sbjct: 294 TYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDV--------TYGTLINGLVKQRRAT- 344

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                   DA++    + +  + +       LI  + +       +  + ++ + G  P+
Sbjct: 345 --------DAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN 396

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           + V++VL+  LC+EGK  +A+ + +     G    A ++++L+ G  K    +E  ++  
Sbjct: 397 IVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWK 456

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M+ +G   + + YS LI+GLC   R+ +A ++  +M   G+ P+ V ++++I G C  G
Sbjct: 457 EMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIG 516

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            +D A  +       +E  +    PD +TY ILLDG C + D+  A+D+   M+ RG + 
Sbjct: 517 SMDAALKLYHEMLCQEEPKSQ---PDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDP 573

Query: 309 DNVAFTALI------SGFCRGGKVVEAERMLR---------------EMLKVGLKPDDAT 347
           D +     +      S  C  G+    E ++R                ML   L P  +T
Sbjct: 574 DVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTST 633

Query: 348 YTMVIDCFCK 357
           + M++   CK
Sbjct: 634 WAMIVREICK 643


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 174/333 (52%), Gaps = 11/333 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   + VLM  LC +     A  +       G+ A  V++ TLI G C A  +D+   L
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  SG+ P+V  YS+L+ G CK  R +D   +  EM E+G+ P+ V++T LID  CK
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+       K+A  ++D M   GL P+ +TY +L++  CKEG ++ A+ + K+M ++G+
Sbjct: 233 VGK------AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGV 286

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREML--KVGLKPDDATYTMVIDCFCKNGDTKTG 364
             D V +  LI G     ++ EA  +L EM+  K  +KP+  T+  VI   C  G  +  
Sbjct: 287 APDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA 346

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F++   M   G +  + TYN L+ GL +  +++ A  L+D M  LG+ PD  TY+IL++G
Sbjct: 347 FQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKG 406

Query: 425 HCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
            CK       ED      ++G+  +   Y  L+
Sbjct: 407 FCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 172/365 (47%), Gaps = 67/365 (18%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            ++E+ + G  P V ++  L+  LCK GK K A  V D   +RGL    V++N LIN  C
Sbjct: 207 VFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMC 266

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG---LTP 232
           K  ++ E   +   M   G+ PDV TY+ LI GL     +D+A  LL EM  RG   + P
Sbjct: 267 KEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV-RGKNIVKP 325

Query: 233 NDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIV 263
           N V F ++I G C  GR+  A                               +++A +++
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELM 385

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE---------------- 307
           DEM + GL PD  TY+IL+ GFCK   ++ A D+   M  RGIE                
Sbjct: 386 DEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQ 445

Query: 308 ------------------LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
                             LD VA++ +I G C+ G +  A+ +L+ ++  GL PD  TY+
Sbjct: 446 GMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYS 505

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           +VI+ F K+GD +    +LK+M + G LP V  +++L+ G    G++     L+  M+  
Sbjct: 506 IVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITK 565

Query: 410 GVVPD 414
            +  D
Sbjct: 566 NIALD 570



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 45/379 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P+V V++ L+   CK G+ +D   VF E  ++G+    V +  LI+  CK  
Sbjct: 175 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 234

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              +   +  +M   G+ P+V TY+ LIN +CKE  + +A  +L +M E+G+ P+ V + 
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYN 294

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLNPDKITYTILLDGFCKEGDLESALD 296
           TLI G      +    +M EA  +++EM    N + P+ +T+  ++ G C  G +  A  
Sbjct: 295 TLIKG------LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +R  M + G  ++ V +  LI G  R  KV +A  ++ EM  +GL+PD  TY+++I  FC
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408

Query: 357 KNGDTKTGFRLLKEMRSDGHLPA----------------------------------VET 382
           K         LL  MR  G  P                                   V  
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVA 468

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD---KLQS 439
           Y+ +++G CK G LK A  LL +++D G+ PD +TY+I++    K G+ E  +   K  +
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMT 528

Query: 440 EKGLVSDYACYTSLVSKSS 458
             G + D A + SL+   S
Sbjct: 529 ASGFLPDVAVFDSLIQGYS 547



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 14/297 (4%)

Query: 164 AVSFNTLINGHCKAKNLDEG---FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
           AVS+NT++   C+  + D      R  S+      RP+  +Y+ L+  LC +   D A  
Sbjct: 77  AVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVG 136

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           LL  M   G+  + V + TLI G C    +D      +A +++ EMC +G+ P+ + Y+ 
Sbjct: 137 LLRSMRSAGVRADVVTYGTLIRGLCDAAEVD------KAVELMGEMCESGIEPNVVVYSS 190

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           LL G+CK G  E    +  EM ++GIE D V +T LI   C+ GK  +A  ++  M++ G
Sbjct: 191 LLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRG 250

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L+P+  TY ++I+C CK G  K    +LK+M   G  P V TYN L+ GL    ++  A 
Sbjct: 251 LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAM 310

Query: 401 MLLDTMLDLG--VVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            LL+ M+     V P+ +T+N +++G C  G      ++   + ++ +  C  +LV+
Sbjct: 311 WLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV---RAMMEETGCMVNLVT 364



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMC---ERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           D  +Y+ ++  LC+    D A  LL  M         PN V +T L+   C +   D   
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLAD--- 132

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +A  ++  M + G+  D +TY  L+ G C   +++ A+++  EM + GIE + V ++
Sbjct: 133 ---QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           +L+ G+C+ G+  +  ++  EM + G++PD   YT +ID  CK G  K    ++  M   
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR 249

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           G  P V TYN L+N +CK G +K A  +L  M + GV PD +TYN L++G
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 75/259 (28%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FN ++  LC  G+++ A  V     + G     V++N LI G  +   + +   L
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN------------- 233
              M   G+ PD +TYS LI G CK  ++D AE LL  M +RG+ P              
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 234 --------------------DVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
                               DV+ ++T+I G CK      AGD+K A++++  +   GL 
Sbjct: 445 QGMMERARNLFNEMDNNFPLDVVAYSTMIHGACK------AGDLKTAKELLKSIVDEGLT 498

Query: 273 PDKITYTILLDGFCKEGDLESA-----------------------------------LDI 297
           PD +TY+I+++ F K GD+E+A                                   L++
Sbjct: 499 PDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLEL 558

Query: 298 RKEMIKRGIELDNVAFTAL 316
            +EMI + I LD+   + L
Sbjct: 559 IREMITKNIALDSKIISTL 577



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 58/120 (48%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +D  +   V  ++ ++H  CK G +K A+ +       GL   AV+++ +IN   K+ ++
Sbjct: 458 MDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDM 517

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +    +   M  SG  PDV  + +LI G   +  ++    L+ EM  + +  +  I +TL
Sbjct: 518 EAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577


>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 521

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 202/399 (50%), Gaps = 13/399 (3%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT-HLPGLVLDA 64
           TLH +S ++H L  ++    A+ +   I++     ++++LF S+L +    +   LV D 
Sbjct: 101 TLHTHSFLLHILTKNRNFKTAQSIFSKIIT-----TNSNLFESLLHSYTLCNSSPLVFDT 155

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L   +  +  L +A   F  ++++ F      C   +  M+    P + + FY ++    
Sbjct: 156 LFKTFAHMNKLRNATDTFVKMKEYGFFPTVESCNAFLSSMLYLKRPELVVSFYRQMRRNR 215

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+VY  N+++   CK G++  A  V ++    GL    V+FN+LI+G+C    L    
Sbjct: 216 ISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGLLGLAL 275

Query: 185 RLKSVMEG-SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           +++ +M G +G+ P+V T++ LING CKE +L +A  +  EM    + PN V + TLI+G
Sbjct: 276 KVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLING 335

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                    AG+ +    + +EM  N +  D +TY  L+ G CKEG  + A  + KE+ K
Sbjct: 336 ------FGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKELDK 389

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             +  +   F+ALI+G C       A  + R M++ G  P++ T+ M+   FCKN D   
Sbjct: 390 GNLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNENTFRMLASAFCKNEDFDG 449

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
             ++L++M      P     + + +GLC+ G+ + A ML
Sbjct: 450 AVQVLRDMLERFMTPDSSILSEVYSGLCRCGRKQFALML 488



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 20/236 (8%)

Query: 114 LGFYLEILDY-----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           LG  L++ D      G  P+V  FN L++  CKEGK+ +A  VF E     +    V++N
Sbjct: 271 LGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYN 330

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           TLING  +A N + G  L   ME + ++ D+ TY+ LI GLCKE +   A  ++ E+ + 
Sbjct: 331 TLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKELDKG 390

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
            L PN   F+ LI G C      +  + + A  +   M  +G +P++ T+ +L   FCK 
Sbjct: 391 NLVPNASTFSALIAGQC------VRNNSERAFLVYRSMVRSGFSPNENTFRMLASAFCKN 444

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV---------VEAERMLRE 335
            D + A+ + ++M++R +  D+   + + SG CR G+          +EA+R+L +
Sbjct: 445 EDFDGAVQVLRDMLERFMTPDSSILSEVYSGLCRCGRKQFALMLCSEIEAKRLLPQ 500



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 4/188 (2%)

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
           N   + +  L   F     L +A D   +M + G      +  A +S      +      
Sbjct: 147 NSSPLVFDTLFKTFAHMNKLRNATDTFVKMKEYGFFPTVESCNAFLSSMLYLKRPELVVS 206

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
             R+M +  + P+  T  MV+  +CK G+      +L++M+  G  P V T+N+L++G C
Sbjct: 207 FYRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYC 266

Query: 392 KHGQLKNANMLLDTML-DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVS---DY 447
             G L  A  + D M+   GV P+ +T+N L+ G CK G   + +++ SE  L +   + 
Sbjct: 267 DKGLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNV 326

Query: 448 ACYTSLVS 455
             Y +L++
Sbjct: 327 VTYNTLIN 334


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 206/429 (48%), Gaps = 34/429 (7%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPGLV 61
           FR +   +S M+  LV+      A +LL  +  +K    +  +F SI    G  H P   
Sbjct: 46  FRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEK-CNITEDIFLSICRAYGRVHKP--- 101

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
                          DA++ FR ++++      +    +   ++  N   + L FY  + 
Sbjct: 102 --------------LDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMR 147

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQM-VFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           + G  PSV   NVL+  LCK     DA + +F E   RG    + ++ TLI G C+   +
Sbjct: 148 EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKI 207

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            E   L   ME     P V TY +LI+GLC+   LD A  LL EM  +G+ PN   +++L
Sbjct: 208 GEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSL 267

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           +DGHCK      +G    A +++D M +    P+ ITY+ L+ G CKEG L+ A++I   
Sbjct: 268 MDGHCK------SGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDR 321

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM-------VID 353
           M  +G+  D   +  +ISGFC   K  EA   L EM+  G+ P+  T+++       V+ 
Sbjct: 322 MKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQ 381

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C     +  F+L   MR+ G     +T+++L+N  C  G L  A  L+D M+  G +P
Sbjct: 382 GLCTEHPNR-AFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIP 440

Query: 414 DDITYNILL 422
           D+ T+N ++
Sbjct: 441 DEXTWNAVV 449



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 47/313 (15%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             L  + E+ + G  P  Y +  L+  LC+ GKI +A+ +F E   +    T V++ +LI
Sbjct: 174 AALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLI 233

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G C++K+LD   RL   M   G++P+V+TYS+L++G CK      A  LL  M  R   
Sbjct: 234 HGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHL 293

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------KEARKI 262
           PN + ++TL+ G CK G++  A ++                              EA   
Sbjct: 294 PNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANF 353

Query: 263 VDEMCTNGLNPDKITYT-------ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           +DEM   G++P+++T++       I++ G C E     A  +   M  RGI +D   F +
Sbjct: 354 LDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHP-NRAFQLYLSMRTRGISIDAKTFDS 412

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++ FC  G + +A  ++ EM+  G  PD+ T+  V+  F             +++R   
Sbjct: 413 LVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDR----------RKVRESA 462

Query: 376 HLPAVETYNALMN 388
            L  VE     +N
Sbjct: 463 ELVQVELMGTFLN 475



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 141/303 (46%), Gaps = 5/303 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+  S   F++++ +L      + A+ +     +   + T   F ++   + +     + 
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+   M+     P   +Y  +   L  EN+L  A      M E G+ P+      LI  
Sbjct: 105 VRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKA 164

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKN     +G M  A +I  EM   G  P   TY  L+ G C+ G +  A ++ KEM  
Sbjct: 165 LCKN-----SGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMET 219

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +      V + +LI G C+   +  A R+L EM   G+KP+  TY+ ++D  CK+G +  
Sbjct: 220 KACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSR 279

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              LL  M S  HLP + TY+ L++GLCK G+L+ A  +LD M   G+ PD   Y  ++ 
Sbjct: 280 ALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS 339

Query: 424 GHC 426
           G C
Sbjct: 340 GFC 342



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 147/319 (46%), Gaps = 16/319 (5%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           DA  VF +  +     +  S+ T+         L    R    M   G+ P V + + LI
Sbjct: 103 DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLI 162

Query: 207 NGLCKENRLDDAEL-LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
             LCK +   DA L +  EM  RG  P+   + TLI G C+ G+I       EA+++  E
Sbjct: 163 KALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIG------EAKELFKE 216

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M T   +P  +TY  L+ G C+  DL+SA+ + +EM  +GI+ +   +++L+ G C+ G 
Sbjct: 217 METKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGC 276

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
              A  +L  M+     P+  TY+ ++   CK G  +    +L  M+  G  P    Y  
Sbjct: 277 SSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGK 336

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY-------NILLEGHCKHGNPEDFDKLQ 438
           +++G C   +   A   LD M+  G+ P+ +T+       NI+++G C       F    
Sbjct: 337 IISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYL 396

Query: 439 S--EKGLVSDYACYTSLVS 455
           S   +G+  D   + SLV+
Sbjct: 397 SMRTRGISIDAKTFDSLVN 415



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 135/300 (45%), Gaps = 41/300 (13%)

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           +G R    T+S +I+ L   N    AE LL  M E      + IF ++   +   GR+  
Sbjct: 44  NGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAY---GRVHK 100

Query: 253 AGD-------MKE-------------------------ARKIVDEMCTNGLNPDKITYTI 280
             D       MKE                         A +    M   G+ P   +  +
Sbjct: 101 PLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNV 160

Query: 281 LLDGFCK-EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           L+   CK  G +++AL I +EM  RG    +  +  LI G CR GK+ EA+ + +EM   
Sbjct: 161 LIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETK 220

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              P   TY  +I   C++ D  +  RLL+EM S G  P V TY++LM+G CK G    A
Sbjct: 221 ACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRA 280

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
             LLD M+    +P+ ITY+ L+ G CK G  ++     D+++ + GL  D   Y  ++S
Sbjct: 281 LELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQ-GLRPDAGLYGKIIS 339



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 7/213 (3%)

Query: 250 IDMAGDMKEARKIVDEMC---TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           I    D+++A  I D      TNG      T+++++           A ++   M +   
Sbjct: 22  IKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKC 81

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            +    F ++   + R  K ++A R+ R+M +   +P   +Y  V          K   R
Sbjct: 82  NITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALR 141

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKH-GQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
             + MR  G  P+V + N L+  LCK+ G +  A  +   M + G  P   TY  L+ G 
Sbjct: 142 FYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGL 201

Query: 426 CKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSS 458
           C+ G   +  +L  E   +   AC  ++V+  S
Sbjct: 202 CRLGKIGEAKELFKE---METKACSPTVVTYXS 231


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 174/333 (52%), Gaps = 11/333 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   + VLM  LC +     A  +       G+ A  V++ TLI G C A  +D+   L
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  SG+ P+V  YS+L+ G CK  R +D   +  EM E+G+ P+ V++T LID  CK
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+       K+A  ++D M   GL P+ +TY +L++  CKEG ++ A+ + K+M ++G+
Sbjct: 233 VGK------AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGV 286

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREML--KVGLKPDDATYTMVIDCFCKNGDTKTG 364
             D V +  LI G     ++ EA  +L EM+  K  +KP+  T+  VI   C  G  +  
Sbjct: 287 APDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA 346

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F++   M   G +  + TYN L+ GL +  +++ A  L+D M  LG+ PD  TY+IL++G
Sbjct: 347 FQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKG 406

Query: 425 HCKHGN---PEDFDKLQSEKGLVSDYACYTSLV 454
            CK       ED      ++G+  +   Y  L+
Sbjct: 407 FCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 172/366 (46%), Gaps = 67/366 (18%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            ++E+ + G  P V ++  L+  LCK GK K A  V D   +RGL    V++N LIN  C
Sbjct: 207 VFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMC 266

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG---LTP 232
           K  ++ E   +   M   G+ PDV TY+ LI GL     +D+A  LL EM  RG   + P
Sbjct: 267 KEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV-RGKNIVKP 325

Query: 233 NDVIFTTLIDGHCKNGRIDMAGD-----------------------------MKEARKIV 263
           N V F ++I G C  GR+  A                               +++A +++
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELM 385

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE---------------- 307
           DEM + GL PD  TY+IL+ GFCK   ++ A D+   M  RGIE                
Sbjct: 386 DEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQ 445

Query: 308 ------------------LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
                             LD VA++ +I G C+ G +  A+ +L+ ++  GL PD  TY+
Sbjct: 446 GMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYS 505

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           +VI+ F K+GD +    +LK+M + G LP V  +++L+ G    G++     L+  M+  
Sbjct: 506 IVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITK 565

Query: 410 GVVPDD 415
            +  D 
Sbjct: 566 NIALDS 571



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 182/379 (48%), Gaps = 45/379 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ + G  P+V V++ L+   CK G+ +D   VF E  ++G+    V +  LI+  CK  
Sbjct: 175 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 234

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              +   +  +M   G+ P+V TY+ LIN +CKE  + +A  +L +M E+G+ P+ V + 
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYN 294

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMC--TNGLNPDKITYTILLDGFCKEGDLESALD 296
           TLI G      +    +M EA  +++EM    N + P+ +T+  ++ G C  G +  A  
Sbjct: 295 TLIKG------LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +R  M + G  ++ V +  LI G  R  KV +A  ++ EM  +GL+PD  TY+++I  FC
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408

Query: 357 KNGDTKTGFRLLKEMRSDGHLPA----------------------------------VET 382
           K         LL  MR  G  P                                   V  
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVA 468

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD---KLQS 439
           Y+ +++G CK G LK A  LL +++D G+ PD +TY+I++    K G+ E  +   K  +
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMT 528

Query: 440 EKGLVSDYACYTSLVSKSS 458
             G + D A + SL+   S
Sbjct: 529 ASGFLPDVAVFDSLIQGYS 547



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 14/297 (4%)

Query: 164 AVSFNTLINGHCKAKNLDEG---FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
           AVS+NT++   C+  + D      R  S+      RP+  +Y+ L+  LC +   D A  
Sbjct: 77  AVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVG 136

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           LL  M   G+  + V + TLI G C    +D      +A +++ EMC +G+ P+ + Y+ 
Sbjct: 137 LLRSMRSAGVRADVVTYGTLIRGLCDAAEVD------KAVELMGEMCESGIEPNVVVYSS 190

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           LL G+CK G  E    +  EM ++GIE D V +T LI   C+ GK  +A  ++  M++ G
Sbjct: 191 LLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRG 250

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L+P+  TY ++I+C CK G  K    +LK+M   G  P V TYN L+ GL    ++  A 
Sbjct: 251 LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAM 310

Query: 401 MLLDTMLDLG--VVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            LL+ M+     V P+ +T+N +++G C  G      ++   + ++ +  C  +LV+
Sbjct: 311 WLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV---RAMMEETGCMVNLVT 364



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMC---ERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           D  +Y+ ++  LC+    D A  LL  M         PN V +T L+   C +   D   
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLAD--- 132

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +A  ++  M + G+  D +TY  L+ G C   +++ A+++  EM + GIE + V ++
Sbjct: 133 ---QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           +L+ G+C+ G+  +  ++  EM + G++PD   YT +ID  CK G  K    ++  M   
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR 249

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           G  P V TYN L+N +CK G +K A  +L  M + GV PD +TYN L++G
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 75/259 (28%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  FN ++  LC  G+++ A  V     + G     V++N LI G  +   + +   L
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN------------- 233
              M   G+ PD +TYS LI G CK  ++D AE LL  M +RG+ P              
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 234 --------------------DVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
                               DV+ ++T+I G CK      AGD+K A++++  +   GL 
Sbjct: 445 QGMMERARNLFNEMDNNFPLDVVAYSTMIHGACK------AGDLKTAKELLKSIVDEGLT 498

Query: 273 PDKITYTILLDGFCKEGDLESA-----------------------------------LDI 297
           PD +TY+I+++ F K GD+E+A                                   L++
Sbjct: 499 PDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLEL 558

Query: 298 RKEMIKRGIELDNVAFTAL 316
            +EMI + I LD+   + L
Sbjct: 559 IREMITKNIALDSKIISTL 577



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 58/120 (48%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           +D  +   V  ++ ++H  CK G +K A+ +       GL   AV+++ +IN   K+ ++
Sbjct: 458 MDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDM 517

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +    +   M  SG  PDV  + +LI G   +  ++    L+ EM  + +  +  I +TL
Sbjct: 518 EAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 193/392 (49%), Gaps = 22/392 (5%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           AL+   V++G+  D      L+   +    A     L+D+M++                 
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR---------------- 217

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +  +  +++ LCK G I  A  + ++     + A  V FNT+I+  CK ++++  
Sbjct: 218 GCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVA 277

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L + ME  G+RP+V TY++LIN LC   R  DA  LL  M E+ + PN V F  LID 
Sbjct: 278 VDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDA 337

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G+      + EA K+ +EM    ++PD ITY +L++GFC    L+ A  + K M+ 
Sbjct: 338 FFKEGK------LVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS 391

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +    +   +  LI+GFC+  +V +   + REM + GL  +  TYT +I  F + GD  +
Sbjct: 392 KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDS 451

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + K+M S+     + TY+ L++GLC +G+L  A ++   +    +  +   YN ++E
Sbjct: 452 AQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIE 511

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           G CK G   +   L     +  D   Y +++S
Sbjct: 512 GMCKAGKVGEAWDLFCSLSIKPDVVTYNTMIS 543



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 184/347 (53%), Gaps = 11/347 (3%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++LG  ++ L  G S  +Y +++ ++  C+  ++  A  V  +  K G     V+ ++L
Sbjct: 102 VISLGEQMQTL--GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +NG+C +K + +   L   M   G +PD +T++ LI+GL   N+  +A  L+ +M +RG 
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + T+++G CK G ID+A ++      +++M    +  + + +  ++D  CK   
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALNL------LNKMEAARIKANVVIFNTIIDSLCKYRH 273

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +E A+D+  EM  +GI  + V + +LI+  C  G+  +A R+L  ML+  + P+  T+  
Sbjct: 274 VEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +ID F K G      +L +EM      P   TYN L+NG C H +L  A  +   M+   
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKD 393

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
            +P+  TYN L+ G CK    ED  +L    S++GLV +   YT+++
Sbjct: 394 CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 6/331 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
            I+   R +  ++ L    +++  GY P +   + L++  C   +I DA  + D+  + G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 +F TLI+G        E   L   M   G +PD+ TY  ++NGLCK   +D A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL++M    +  N VIF T+ID  CK   +++A D+        EM T G+ P+ +TY 
Sbjct: 244 NLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDL------FTEMETKGIRPNVVTYN 297

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++  C  G    A  +   M+++ I  + V F ALI  F + GK+VEAE++  EM++ 
Sbjct: 298 SLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR 357

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + PD  TY ++I+ FC +       ++ K M S   LP ++TYN L+NG CK  ++++ 
Sbjct: 358 SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDG 417

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             L   M   G+V + +TY  +++G  + G+
Sbjct: 418 VELFREMSQRGLVGNTVTYTTIIQGFFQAGD 448



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 161/332 (48%), Gaps = 9/332 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  FN L+  + K  K +    + ++    G+     +++  IN  C+   L     +
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G  PD+ T S+L+NG C   R+ DA  L+ +M E G  P+   FTTLI G   
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHG--- 197

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
              + +     EA  +VD+M   G  PD +TY  +++G CK GD++ AL++  +M    I
Sbjct: 198 ---LFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARI 254

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + + V F  +I   C+   V  A  +  EM   G++P+  TY  +I+C C  G      R
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL  M      P V T+NAL++   K G+L  A  L + M+   + PD ITYN+L+ G C
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 427 KHGNPEDFD---KLQSEKGLVSDYACYTSLVS 455
            H   ++     K    K  + +   Y +L++
Sbjct: 375 MHNRLDEAKQMFKFMVSKDCLPNIQTYNTLIN 406



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 156/302 (51%), Gaps = 9/302 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+   +P+V  FN L+    KEGK+ +A+ + +E  +R +    +++N LING C    
Sbjct: 319 MLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNR 378

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LDE  ++   M      P++ TY+ LING CK  R++D   L  EM +RGL  N V +TT
Sbjct: 379 LDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I G  +      AGD   A+ +  +M +N +  D +TY+ILL G C  G L++AL I K
Sbjct: 439 IIQGFFQ------AGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFK 492

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            + K  +EL+   +  +I G C+ GKV EA  +      + +KPD  TY  +I   C   
Sbjct: 493 YLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF---CSLSIKPDVVTYNTMISGLCSKR 549

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +    L ++M+ DG LP   TYN L+    +      +  L+  M   G V D  T +
Sbjct: 550 LLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTIS 609

Query: 420 IL 421
           ++
Sbjct: 610 LV 611



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 204/450 (45%), Gaps = 30/450 (6%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            ++T++H L  H   S+A  L+  +V +   G    L      T GT + GL        
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQR---GCQPDLV-----TYGTVVNGLC------- 234

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G +D A+     +     +        +ID + +     V +  + E+   G  P+
Sbjct: 235 --KRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +N L++ LC  G+  DA  +     ++ ++   V+FN LI+   K   L E  +L  
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + PD  TY+ LING C  NRLD+A+ +   M  +   PN   + TLI+G CK  
Sbjct: 353 EMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCK 412

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           R++      +  ++  EM   GL  + +TYT ++ GF + GD +SA  + K+M+   +  
Sbjct: 413 RVE------DGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPT 466

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D + ++ L+ G C  GK+  A  + + + K  ++ +   Y  +I+  CK G     + L 
Sbjct: 467 DIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF 526

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH--- 425
             +      P V TYN +++GLC    L+ A+ L   M + G +P+  TYN L+  +   
Sbjct: 527 CSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRD 583

Query: 426 CKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           C      +  K     G V D A   SLV+
Sbjct: 584 CDRAASAELIKEMRSSGFVGD-ASTISLVT 612



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 157/307 (51%), Gaps = 6/307 (1%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L ++L    K+ DA  +F +  K     + V FN L++   K    +    L   M+  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
           G+  D+YTYS  IN  C+ ++L  A  +L +M + G  P+ V  ++L++G+C + RI   
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRI--- 169

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               +A  +VD+M   G  PD  T+T L+ G         A+ +  +M++RG + D V +
Sbjct: 170 ---SDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             +++G C+ G +  A  +L +M    +K +   +  +ID  CK    +    L  EM +
Sbjct: 227 GTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMET 286

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P V TYN+L+N LC +G+  +A+ LL  ML+  + P+ +T+N L++   K G   +
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVE 346

Query: 434 FDKLQSE 440
            +KL  E
Sbjct: 347 AEKLHEE 353


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 188/387 (48%), Gaps = 32/387 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID +++        G   E++ +G +   Y+++  +  + KEG ++ A+ +FD     G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L   A ++ +LI G+C+ KN+ +G+ L   M+   +    YTY  ++ G+C    LD A 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGR-----------------------------I 250
            ++ EM   G  PN VI+TTLI    +N R                             +
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             A  M EAR  + EM  NGL P+  TY   + G+ +  +  SA    KEM + G+  + 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V  T LI+ +C+  KV+EA    R M+  G+  D  TYT++++   KN        + +E
Sbjct: 558 VLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           MR  G  P V +Y  L+NG  K G ++ A+ + D M++ G+ P+ I YN+LL G C+ G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            E   +L  E   KGL  +   Y +++
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTII 704



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 208/450 (46%), Gaps = 26/450 (5%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           H YS ++  L+  +    A+ L+H +VS                  G ++   + D  + 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVS-----------------HGINIKPYMYDCCIC 355

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           V    G ++ A   F  +        A+    LI+   R           +E+       
Sbjct: 356 VMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S Y +  ++  +C  G +  A  +  E    G     V + TLI    +     +  R+ 
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+  G+ PD++ Y++LI GL K  R+D+A   L EM E GL PN   +   I G+ + 
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE- 534

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                A +   A K V EM   G+ P+K+  T L++ +CK+  +  A    + M+ +GI 
Sbjct: 535 -----ASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGIL 589

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            D   +T L++G  +  KV +AE + REM   G+ PD  +Y ++I+ F K G+ +    +
Sbjct: 590 GDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSI 649

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM  +G  P V  YN L+ G C+ G+++ A  LLD M   G+ P+ +TY  +++G+CK
Sbjct: 650 FDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCK 709

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            G+  +  +L  E   KGLV D   YT+LV
Sbjct: 710 SGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 193/412 (46%), Gaps = 72/412 (17%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V ++  L+    +  +  DA  V  E  ++G+      +N+LI G  KAK
Sbjct: 442 EMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +DE       M  +G++P+ +TY A I+G  + +    A+  + EM E G+ PN V+ T
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 239 TLIDGHCKNGRIDMA-------------GDMK----------------EARKIVDEMCTN 269
            LI+ +CK  ++  A             GD K                +A +I  EM   
Sbjct: 562 GLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G+ PD  +Y +L++GF K G+++ A  I  EM++ G+  + + +  L+ GFCR G++ +A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           + +L EM   GL P+  TY  +ID +CK+GD    FRL  EM+  G +P    Y  L++G
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 390 LCKHGQLKNA--------------------------------------NMLLDTMLDLGV 411
            C+   ++ A                                      N L+D   D   
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
            P+D+TYNI+++  CK GN E     F ++Q+   L+     YTSL++   K
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN-ANLMPTVITYTSLLNGYDK 852



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 192/361 (53%), Gaps = 8/361 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA + FR +R             LI+   +          + E+++ G +P+V ++N+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   C+ G+I+ A+ + DE   +GLH  AV++ T+I+G+CK+ +L E FRL   M+  G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD + Y+ L++G C+ N ++ A + +    ++G   +   F  LI+   K G+ ++  
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           ++    +++D        P+ +TY I++D  CKEG+LE+A ++  +M    +    + +T
Sbjct: 787 EV--LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS- 373
           +L++G+ + G+  E   +  E +  G++PD   Y+++I+ F K G T     L+ +M + 
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904

Query: 374 ----DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
               DG   ++ T  AL++G  K G+++ A  +++ M+ L  +PD  T   L+   C   
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISS 964

Query: 430 N 430
           N
Sbjct: 965 N 965



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 172/368 (46%), Gaps = 32/368 (8%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y ++VL+  LCK  +++DA+ +  E    G+     +++ LI+G  K +N D  
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G+    Y Y   I  + KE  ++ A+ L   M   GL P    + +LI+G
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 244 HC--KNGR------IDM---------------------AGDMKEARKIVDEMCTNGLNPD 274
           +C  KN R      ++M                     +GD+  A  IV EM  +G  P+
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + YT L+  F +      A+ + KEM ++GI  D   + +LI G  +  ++ EA   L 
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM++ GLKP+  TY   I  + +  +  +  + +KEMR  G LP       L+N  CK  
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKE 571

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
           ++  A     +M+D G++ D  TY +L+ G  K+   +D +++  E   KG+  D   Y 
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYG 631

Query: 452 SLVSKSSK 459
            L++  SK
Sbjct: 632 VLINGFSK 639



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 171/392 (43%), Gaps = 37/392 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILD-----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
           +++RM+  N P   +  +  I+       G S    +F +L      +G I++A  VF  
Sbjct: 119 VVERMIERNWPVAEV--WSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSS 176

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC---- 210
                L         L++   +   LD  + +   M    +  DV TY  LI   C    
Sbjct: 177 SMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGN 236

Query: 211 ------------KENR-----LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
                       KE R     +D A  L   M  +GL P    +  LIDG CK  R++  
Sbjct: 237 VQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLE-- 294

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
               +A+ ++ EM + G++ D  TY++L+DG  K  + ++A  +  EM+  GI +    +
Sbjct: 295 ----DAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMY 350

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
              I    + G + +A+ +   M+  GL P    Y  +I+ +C+  + + G+ LL EM+ 
Sbjct: 351 DCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKK 410

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE---GHCKHGN 430
              + +  TY  ++ G+C  G L  A  ++  M+  G  P+ + Y  L++    + + G+
Sbjct: 411 RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGD 470

Query: 431 PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
                K   E+G+  D  CY SL+   SK ++
Sbjct: 471 AMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 199/420 (47%), Gaps = 58/420 (13%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YS++VH L   +   +A   L  +V+K            +L    T+      + L+  Y
Sbjct: 257 YSSVVHALCKARAMDKAEAFLRQMVNK-----------GVLPNNWTY------NNLIYGY 299

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
              G   +A++ F+ +R+H                               IL     P V
Sbjct: 300 SSTGQWKEAVRVFKEMRRH------------------------------SIL-----PDV 324

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
              ++LM  LCK GKIK+A+ VFD    +G +    S+  ++NG+     L +   L  +
Sbjct: 325 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDL 384

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M G G+ PD+YT++ LI        LD A ++ +EM + G+ P+ V + T+I   C+ G+
Sbjct: 385 MLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 444

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+ LD
Sbjct: 445 MD------DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLD 498

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V F+++I+  C+ G+V++A+ +    + VGL P    Y+M++D +C  G  +   R+  
Sbjct: 499 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFD 558

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M S G  P    Y  L+NG CK G++     L   ML  G+ P  I YNI+++G  + G
Sbjct: 559 AMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAG 618



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 176/343 (51%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT--AVSFNTLINGHCKAKN 179
           + G  P V+ +++L+  LC +GK   A  +     + G   +   V+++T+I+G  K  +
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGD 234

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD  TYS++++ LCK   +D AE  L +M  +G+ PN+  +  
Sbjct: 235 VNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNN 294

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM  + + PD +T ++L+   CK G ++ A D+  
Sbjct: 295 LIYGYSSTGQ------WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 348

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   +  ++T +++G+   G +V+   +   ML  G+ PD  T+ ++I  +   G
Sbjct: 349 TMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCG 408

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GV PD   Y+
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L SE    G+  D   ++S+++   K
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 205/417 (49%), Gaps = 25/417 (5%)

Query: 25  QARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLG-FLDDAIQCFR 83
           +ARD+   +  K   G + ++F+  +   G    G ++D   +  + LG  +   I  F 
Sbjct: 342 EARDVFDTMAMK---GQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFN 398

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           +L K Y       C  L   M+  N          E+ D+G  P V  +  ++  LC+ G
Sbjct: 399 VLIKAY-----ANCGMLDKAMIIFN----------EMRDHGVKPDVVTYRTVIAALCRIG 443

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA   F++   +G+     +++ LI G C   +L +   L S +  +GM  D+  +S
Sbjct: 444 KMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFS 503

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           ++IN LCK  R+ DA+ +       GL P  V+++ L+DG+C      + G M++A ++ 
Sbjct: 504 SIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYC------LVGKMEKALRVF 557

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M + G+ P+ + Y  L++G+CK G ++  L + +EM+++GI+   + +  +I G    
Sbjct: 558 DAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEA 617

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+ V A+    EM + G+  +  TY +V+    KN        L KE+R+      + T 
Sbjct: 618 GRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITL 677

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N ++ G+ +  +++ A  L  ++   G+VP  +TY+I++    K G  E+ + + S 
Sbjct: 678 NTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS 734



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 154/303 (50%), Gaps = 8/303 (2%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R ++   + L+ G C+  R 
Sbjct: 103 GPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRT 162

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   ++ L+   C  G+   A D+         +C+    PD
Sbjct: 163 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS----PD 218

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y+ ++DGF KEGD+  A D+ KEM++RGI  D V +++++   C+   + +AE  LR
Sbjct: 219 VVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLR 278

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+  G+ P++ TY  +I  +   G  K   R+ KEMR    LP V T + LM  LCK+G
Sbjct: 279 QMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 338

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYT 451
           ++K A  + DTM   G  P+  +Y I+L G+   G   +  D   L    G+  D   + 
Sbjct: 339 KIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFN 398

Query: 452 SLV 454
            L+
Sbjct: 399 VLI 401



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 167/337 (49%), Gaps = 14/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ + + +LM    +  + + A   F +  + GL    +  N L+ G C+AK  DE   
Sbjct: 108 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALD 167

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++YS L+  LC + +   A+ LL  M E G   +P+ V ++T+ID
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVID 227

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  K G ++ A D+        EM   G+ PD +TY+ ++   CK   ++ A    ++M+
Sbjct: 228 GFFKEGDVNKACDL------FKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV 281

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+  +N  +  LI G+   G+  EA R+ +EM +  + PD  T +M++   CK G  K
Sbjct: 282 NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK 341

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +Y  ++NG    G L +   L D ML  G+ PD  T+N+L+
Sbjct: 342 EARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLI 401

Query: 423 EGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           + +   G  +     F++++ + G+  D   Y ++++
Sbjct: 402 KAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYRTVIA 437



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 6/358 (1%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            + L+  Y + G LD A+  F  +R H  +      R +I  + R       +  + +++
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D G +P  Y ++ L+   C  G +  A+ +  E    G+H   V F+++IN  CK   + 
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 516

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   +  +    G+ P    YS L++G C   +++ A  +   M   G+ PNDV++ TL+
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G+CK GRID      E   +  EM   G+ P  I Y I++DG  + G    A     EM
Sbjct: 577 NGYCKIGRID------EGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 630

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            + GI ++   +  ++ G  +     EA  + +E+  + +K +  T   +I    +    
Sbjct: 631 TESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRV 690

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +    L   +   G +P V TY+ ++  L K G ++ A  +  +M + G  PD    N
Sbjct: 691 EEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 748



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EI++ G    +  F+ +++ LCK G++ DAQ +FD     GLH TAV ++ L++G+C   
Sbjct: 489 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVG 548

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++  R+   M  +G+ P+   Y  L+NG CK  R+D+   L  EM ++G+ P+ +++ 
Sbjct: 549 KMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 608

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG  + GR         A+    EM  +G+  +K TY I+L G  K    + A+ + 
Sbjct: 609 IIIDGLFEAGRT------VPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLF 662

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KE+    ++++ +    +I+G  +  +V EA+ +   + + GL P   TY+++I    K 
Sbjct: 663 KELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKE 722

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           G  +    +   M++ G  P     N ++  L K  ++  A   L  +
Sbjct: 723 GLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 770



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 29/277 (10%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           ++ G  P+  V+++LM   C  GK++ A  VFD     G+    V + TL+NG+CK   +
Sbjct: 526 VNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRI 585

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEG  L   M   G++P    Y+ +I+GL +  R   A++  HEM E G+  N   +  +
Sbjct: 586 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIV 645

Query: 241 IDGHCKNGRID------------------------MAG-----DMKEARKIVDEMCTNGL 271
           + G  KN   D                        +AG      ++EA+ +   +  +GL
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 705

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  +TY+I++    KEG +E A D+   M   G E D+     ++    +  ++V A  
Sbjct: 706 VPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGA 765

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
            L ++ +     +  T  +++D F   G  +   R L
Sbjct: 766 YLSKIDERNFSLEHLTTMLLVDLFSSKGTCREHIRFL 802


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 194/411 (47%), Gaps = 35/411 (8%)

Query: 53  RGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           RG   P  V  D ++  + + G +D+A     ++R   F          +  ++R  +  
Sbjct: 279 RGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVG 338

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTL 170
                  E+   G  P+ Y +N+++  LCKEGK  D + V D F K G+     V++ +L
Sbjct: 339 EAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVED-FVKSGVMTPDVVTYTSL 397

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ++ +C   N     R+   M   G  P+ +TY+ L+  L K  R+ +AE LL  M E+G 
Sbjct: 398 LHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGY 457

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-------------------- 270
           + +      +IDG C+N ++DMA D      IVD M   G                    
Sbjct: 458 SLDTASCNIIIDGLCRNNKLDMAMD------IVDGMWNEGSLALGRLGYSFLSLLTDSSS 511

Query: 271 ---LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
                PD+ITY+ L+   CKEG  + A     EMI + I  D+V +   I G+C+ GK  
Sbjct: 512 SKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTS 571

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
            A ++LR+M K G KP   TY ++I  F +  ++    +L+ EM+  G  P V TYN+L+
Sbjct: 572 LAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLI 631

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              C+ G +  A  LLD ML   +VP+  ++ +L++  CK     DF   Q
Sbjct: 632 KSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCK---TSDFSAAQ 679



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 179/342 (52%), Gaps = 25/342 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y ++L  G +P V+  N+L+  LC  G+++ A+ VFD   +R       SF  L  G+C
Sbjct: 137 LYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMPER----NEFSFGILARGYC 192

Query: 176 KA-KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           +A +++D    L S+        ++   + ++ G C+E ++D+AE L+  M + GL PN 
Sbjct: 193 RAGRSMDALGVLDSMPT-----MNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNV 247

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM---CTNGL-NPDKITYTILLDGFCKEGD 290
           V F   I   CK GR+       +A +I ++M      GL  PD++T+ ++L GFC+ G 
Sbjct: 248 VTFNARISALCKAGRV------LDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGM 301

Query: 291 LESALDIRKEMIKRGIELDNV-AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           ++ A  +  ++++ G  L  V ++   +SG  R G V EA+ +LREM   G++P+  TY 
Sbjct: 302 VDEA-RVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYN 360

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           +++D  CK G      ++   ++S    P V TY +L++  C  G    AN +LD M   
Sbjct: 361 IIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQK 420

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYA 448
           G  P+  TYN+LL+   K G   + ++L    SEKG   D A
Sbjct: 421 GCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTA 462



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 169/374 (45%), Gaps = 68/374 (18%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           L +LD   + ++ V N ++   C+EG++ +A+ + +     GL    V+FN  I+  CKA
Sbjct: 201 LGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKA 260

Query: 178 KNLDEGFRLKSVMEGSGM----RPDVYTYSALINGLCKENRLDDAEL------------- 220
             + + +R+ + M+        RPD  T+  +++G C+   +D+A +             
Sbjct: 261 GRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRR 320

Query: 221 ----------------------LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
                                 LL EM   G+ PN   +  ++DG CK G+   A D+  
Sbjct: 321 VESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGK---AFDV-- 375

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
            RK+ D + +  + PD +TYT LL  +C EG+  +A  I  EM ++G   ++  +  L+ 
Sbjct: 376 -RKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQ 434

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH-- 376
              + G++ EAER+L  M + G   D A+  ++ID  C+N        ++  M ++G   
Sbjct: 435 SLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLA 494

Query: 377 ---------------------LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
                                LP   TY+ L++ LCK G+   A   L  M+   + PD 
Sbjct: 495 LGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDS 554

Query: 416 ITYNILLEGHCKHG 429
           + Y+  + G+CKHG
Sbjct: 555 VLYDTFIHGYCKHG 568



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 190/448 (42%), Gaps = 83/448 (18%)

Query: 90  FRIPARG-CRC--------LIDRMMRTNL---PTVTLGFYLE------------ILDYGY 125
           F I ARG CR         ++D M   NL    TV  GF  E            + D G 
Sbjct: 184 FGILARGYCRAGRSMDALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGL 243

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFD---EFGKRGL-HATAVSFNTLINGHCKAKNLD 181
           +P+V  FN  +  LCK G++ DA  +F+   E  +RGL     V+F+ +++G C+A  +D
Sbjct: 244 APNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVD 303

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   L  +M   G    V +Y+  ++GL +   + +A+ LL EM   G+ PN   +  ++
Sbjct: 304 EARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIV 363

Query: 242 DGHCKNGR-IDM----------------------------AGDMKEARKIVDEMCTNGLN 272
           DG CK G+  D+                             G+   A +I+DEM   G  
Sbjct: 364 DGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCA 423

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+  TY +LL    K G +  A  + + M ++G  LD  +   +I G CR  K+  A  +
Sbjct: 424 PNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDI 483

Query: 333 LREMLKVG-----------------------LKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
           +  M   G                         PD  TY+ ++   CK G      + L 
Sbjct: 484 VDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLL 543

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM      P    Y+  ++G CKHG+   A  +L  M   G  P   TYN+L+ G  +  
Sbjct: 544 EMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKH 603

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLV 454
           N ++  KL SE   KG+  +   Y SL+
Sbjct: 604 NSDEILKLISEMKGKGICPNVMTYNSLI 631



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 177/374 (47%), Gaps = 37/374 (9%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G +P+ + +NVL+  L K G+I +A+ + +   ++G      S N +I+G C+  
Sbjct: 416 EMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNN 475

Query: 179 NLDEGFRLKSVMEGSGMR-----------------------PDVYTYSALINGLCKENRL 215
            LD    +   M   G                         PD  TYS L++ LCKE R 
Sbjct: 476 KLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRF 535

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D+A+  L EM  + ++P+ V++ T I G+CK+G+  +A       K++ +M   G  P  
Sbjct: 536 DEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLA------VKVLRDMEKKGCKPST 589

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY +L+ GF ++ + +  L +  EM  +GI  + + + +LI  FC  G V +A  +L E
Sbjct: 590 RTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDE 649

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML+  + P+  ++ ++I  FCK  D     R+     S      V  Y+ +   L  +G+
Sbjct: 650 MLQNEIVPNITSFELLIKAFCKTSDFSAAQRVFDASLSTCGQKEV-LYSLMCTQLSTYGR 708

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCK-----HGNPEDFDKLQSEKGLVSDYACY 450
              A  +L+T+L+L +      Y  ++EG CK     HG+     KL   KG   D A +
Sbjct: 709 WLEAMNILETVLELRISIHRFPYKQIIEGLCKVDEVDHGH--RLLKLLMVKGYSFDPAAF 766

Query: 451 TSLVSKSSKYRQKR 464
             ++   S+  +K+
Sbjct: 767 MPVIDALSERGKKQ 780



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 18/275 (6%)

Query: 98  RCLIDRMMRTNLPTVTL--GFY-------LEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
           RCL DR+  + L +     G +       LE++    SP   +++  +H  CK GK   A
Sbjct: 514 RCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLA 573

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             V  +  K+G   +  ++N LI G  +  N DE  +L S M+G G+ P+V TY++LI  
Sbjct: 574 VKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKS 633

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD-EMC 267
            C+   ++ A  LL EM +  + PN   F  LI   CK        D   A+++ D  + 
Sbjct: 634 FCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKT------SDFSAAQRVFDASLS 687

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
           T G    ++ Y+++       G    A++I + +++  I +    +  +I G C+  +V 
Sbjct: 688 TCG--QKEVLYSLMCTQLSTYGRWLEAMNILETVLELRISIHRFPYKQIIEGLCKVDEVD 745

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
              R+L+ ++  G   D A +  VID   + G  +
Sbjct: 746 HGHRLLKLLMVKGYSFDPAAFMPVIDALSERGKKQ 780


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 169/311 (54%), Gaps = 9/311 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G    V V+N  ++ L K  ++ DA  +F E  +      A +FN LI G C A ++DE 
Sbjct: 173 GVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEA 232

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLID 242
           F L   M   G  PD+ TY+ L++GLC+ +++D A  LL E+C +    PN V +TT+I 
Sbjct: 233 FELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVIS 292

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+C+  ++D      EA  +  EM  +G  P+  T++ L+DGF K GD+ SAL + K+++
Sbjct: 293 GYCRLSKMD------EASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKIL 346

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G   + +  T+LI+G+CR G V     + REM    +  +  TY+++I   CK+   +
Sbjct: 347 FHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQ 406

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               LL+ ++    +P    YN +++G CK G +  AN ++  M +    PD +T+ IL+
Sbjct: 407 EARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEM-EEKCKPDKLTFTILI 465

Query: 423 EGHCKHG-NPE 432
            GHC  G  PE
Sbjct: 466 IGHCMKGRTPE 476



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 180/378 (47%), Gaps = 43/378 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           +++ + R N P +   F+    +    S S + +N+L+  LC+ G    A++++D     
Sbjct: 78  VLEVVKRFNNPNLGFKFFRFTRERLSMSHSFWTYNMLLRSLCQAGLHNSAKLLYDSMRSD 137

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
           G    +     L++    A   D    L +  + SG++ DV  Y+  +N L K NRLDDA
Sbjct: 138 GQLPDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNNFLNILIKHNRLDDA 197

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  E+       +   F  LI G C       AGD+ EA +++ +M + G +PD +TY
Sbjct: 198 ICLFRELMRSHSCLDAFTFNILIRGLCT------AGDVDEAFELLGDMGSFGCSPDIVTY 251

Query: 279 TILLDGFCKEGDLESALDIRKEM-IKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
            ILL G C+   ++ A D+ +E+ +K     + V++T +ISG+CR  K+ EA  +  EM+
Sbjct: 252 NILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMV 311

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKT---------------------------------- 363
           + G KP+  T++ ++D F K GD  +                                  
Sbjct: 312 RSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVN 371

Query: 364 -GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            G  L +EM +      + TY+ L++ LCK  +L+ A  LL  +    +VP    YN ++
Sbjct: 372 HGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVI 431

Query: 423 EGHCKHGNPEDFDKLQSE 440
           +G+CK GN ++ + + +E
Sbjct: 432 DGYCKSGNIDEANAIVAE 449



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 170/359 (47%), Gaps = 8/359 (2%)

Query: 51  ETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
           +  G  +  +V +  + + +    LDDAI  FR L + +  + A     LI  +      
Sbjct: 170 QCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDV 229

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG-KRGLHATAVSFNT 169
                   ++  +G SP +  +N+L+H LC+  ++  A+ + +E   K       VS+ T
Sbjct: 230 DEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTT 289

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+G+C+   +DE   L   M  SG +P+V+T+SAL++G  K   +  A  +  ++   G
Sbjct: 290 VISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHG 349

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             PN +  T+LI+G+C+ G ++   D+        EM    +  +  TY++L+   CK  
Sbjct: 350 CAPNVITLTSLINGYCRAGWVNHGLDLWR------EMNARNIPANLYTYSVLISALCKSN 403

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            L+ A ++ + + +  I      +  +I G+C+ G + EA  ++ EM +   KPD  T+T
Sbjct: 404 RLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEM-EEKCKPDKLTFT 462

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           ++I   C  G T     +  +M + G  P   T   L + L K G    A  + +T+ +
Sbjct: 463 ILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAARIKETLFE 521



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 23/294 (7%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+ ++H L       +ARDLL  +  K     +   + +++                  Y
Sbjct: 251 YNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISG----------------Y 294

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
             L  +D+A   F  + +   +        L+D  ++       LG + +IL +G +P+V
Sbjct: 295 CRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNV 354

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
                L++  C+ G +     ++ E   R + A   +++ LI+  CK+  L E   L  +
Sbjct: 355 ITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRI 414

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ++ S + P  + Y+ +I+G CK   +D+A  ++ EM E    P+ + FT LI GHC  GR
Sbjct: 415 LKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEM-EEKCKPDKLTFTILIIGHCMKGR 473

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
                   EA  I  +M  +G  PD IT   L     K G    A  I++ + +
Sbjct: 474 T------PEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAARIKETLFE 521



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 6/184 (3%)

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY +LL   C+ G   SA  +   M   G   D+     L+S F    +   ++ +L E 
Sbjct: 110 TYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEA 169

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE-MRSDGHLPAVETYNALMNGLCKHGQ 395
              G++ D   Y   ++   K+        L +E MRS   L A  T+N L+ GLC  G 
Sbjct: 170 QCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAF-TFNILIRGLCTAGD 228

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYA----CYT 451
           +  A  LL  M   G  PD +TYNILL G C+    +    L  E  L  ++A     YT
Sbjct: 229 VDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYT 288

Query: 452 SLVS 455
           +++S
Sbjct: 289 TVIS 292


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 194/411 (47%), Gaps = 51/411 (12%)

Query: 46  FASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-------- 97
           F   ++  G     +  ++L+  Y DL  ++DA++    L       P++GC        
Sbjct: 288 FLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGL-------PSKGCPPDKVSYY 340

Query: 98  ---------------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
                          +CL+++M++               D    P    +N L+H L K 
Sbjct: 341 TVMGFLCKEKKIEQVKCLMEKMVQ---------------DSNLIPDQVTYNTLIHMLSKH 385

Query: 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202
           G   DA     E   +G H   V ++ +++  C+   +DE   L   M      PDV TY
Sbjct: 386 GHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTY 445

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
           +A+++G C+  R+D+A+ +L +M + G  PN V +T L++G C +G+        EAR++
Sbjct: 446 TAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGK------SLEAREM 499

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
           ++    +   P+ ITY +++ GF +EG L  A D+ +EM+++G     V    LI   C+
Sbjct: 500 INVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQ 559

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
             KVVEA++ L E L  G   +   +T VI  FC+ GD +    +L++M      P   T
Sbjct: 560 NQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVT 619

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           Y AL + L K G+L  A  L+  ML  G+ P  +T+  ++  +C+ G  +D
Sbjct: 620 YTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDD 670



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 192/401 (47%), Gaps = 7/401 (1%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           ++SK  +   A     ++  RG  L       +M+ Y   G L +A++   L++K     
Sbjct: 205 VLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEP 264

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
               C   I  +++       L F   +   G  P +  +N L+   C   +I+DA  + 
Sbjct: 265 NLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELI 324

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDE-GFRLKSVMEGSGMRPDVYTYSALINGLCK 211
                +G     VS+ T++   CK K +++    ++ +++ S + PD  TY+ LI+ L K
Sbjct: 325 AGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSK 384

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
               DDA   L E  ++G   + V ++ ++   C+ GR+D      EA+ +V +M +   
Sbjct: 385 HGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMD------EAKSLVIDMYSRSC 438

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
           NPD +TYT ++DGFC+ G ++ A  + ++M K G + + V++TAL++G C  GK +EA  
Sbjct: 439 NPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEARE 498

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           M+    +    P+  TY +V+  F + G       L +EM   G  P     N L+  LC
Sbjct: 499 MINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLC 558

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           ++ ++  A   L+  L+ G   + + +  ++ G C+ G+ E
Sbjct: 559 QNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDME 599



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 180/421 (42%), Gaps = 24/421 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y T++ FL   K   Q + L+  +V    +      + +++     H            
Sbjct: 338 SYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKH------------ 385

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G  DDA+   +      F I   G   ++    +           +++     +P 
Sbjct: 386 ----GHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPD 441

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  ++   C+ G+I +A+ +  +  K G     VS+  L+NG C +    E   + +
Sbjct: 442 VVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMIN 501

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V E     P+  TY  +++G  +E +L +A  L  EM E+G  P  V    LI   C+N 
Sbjct: 502 VSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQ 561

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       EA+K ++E    G   + + +T ++ GFC+ GD+E+AL + ++M       
Sbjct: 562 KV------VEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHP 615

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V +TAL     + G++ EA  ++ +ML  GL P   T+  VI  +C+ G       LL
Sbjct: 616 DAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLL 675

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M      P    YN ++  LC  G L+ A  LL  +L      D  T ++L+E   K 
Sbjct: 676 DRMVKRK--PFRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVLMESCLKK 733

Query: 429 G 429
           G
Sbjct: 734 G 734



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 165/361 (45%), Gaps = 33/361 (9%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           FY     + YS    V+  L+  L K    + A+ V     +RG+  +  +F  ++  + 
Sbjct: 183 FYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYS 242

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +A  L    R+ ++M+ +G+ P++   +  I  L K  +L+ A   L  M   G+ P+ V
Sbjct: 243 RAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIV 302

Query: 236 IFTTLIDGHCKNGRIDMA-----------------------GDMKEARKIVDEMC----- 267
            + +LI G+C   RI+ A                       G + + +KI    C     
Sbjct: 303 TYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKM 362

Query: 268 --TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
              + L PD++TY  L+    K G  + AL   KE   +G  +D V ++A++  FC+ G+
Sbjct: 363 VQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGR 422

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + EA+ ++ +M      PD  TYT ++D FC+ G      ++L++M   G  P   +Y A
Sbjct: 423 MDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTA 482

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKG 442
           L+NGLC  G+   A  +++   +    P+ ITY +++ G  + G      D  +   EKG
Sbjct: 483 LLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKG 542

Query: 443 L 443
            
Sbjct: 543 F 543



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           + Y  LLD   K    + A  + + M +RGIEL   AF  ++  + R GK+  A R+L  
Sbjct: 197 LVYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTL 256

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M K G++P+ +     I    K    +   R L+ M+  G  P + TYN+L+ G C   +
Sbjct: 257 MQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNR 316

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYT 451
           +++A  L+  +   G  PD ++Y  ++   CK    E      +K+  +  L+ D   Y 
Sbjct: 317 IEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYN 376

Query: 452 SLVSKSSKY 460
           +L+   SK+
Sbjct: 377 TLIHMLSKH 385


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 9/339 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G  P V  + +L+   CK    K A  + DE   +G     +++N ++NG C+  
Sbjct: 181 DMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEG 240

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+       +   G  P+  +Y+ ++ GLC   R +DAE L+ EM ++G  PN V F 
Sbjct: 241 RVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFN 300

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   C+ G ++       A +++D++   G  P+ ++Y  +L  FCK+  ++ A+   
Sbjct: 301 MLISFLCRRGLVE------PAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 354

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M+ RG   D V++  L++  CRGG+V  A  +L ++   G  P   +Y  VID   K 
Sbjct: 355 ELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKA 414

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G TK    LL EM + G  P + TY+ + +GLC+  +++ A      + D+G+ P+ + Y
Sbjct: 415 GKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLY 474

Query: 419 NILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           N +L G CK     N  D        G + + + YT L+
Sbjct: 475 NAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILI 513



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 176/347 (50%), Gaps = 11/347 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + D    P  Y +N L+  LC  G+  +A +V D+  +RG     V++  L+   CK   
Sbjct: 147 VADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSG 206

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             +  +L   M   G  PD+ TY+ ++NG+C+E R+DDA   L  +   G  PN V +  
Sbjct: 207 YKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNI 266

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++ G C   R       ++A K++ EM   G  P+ +T+ +L+   C+ G +E A+++  
Sbjct: 267 VLKGLCTAER------WEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLD 320

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           ++ K G   +++++  ++  FC+  K+  A   +  M+  G  PD  +Y  ++   C+ G
Sbjct: 321 QIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGG 380

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +      LL +++  G  P + +YN +++GL K G+ K A  LL+ M+  G+ PD ITY+
Sbjct: 381 EVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYS 440

Query: 420 ILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            +  G C+    E+    F K+Q + G+  +   Y +++    K R+
Sbjct: 441 TISSGLCREDRIEEAIRAFCKVQ-DMGIRPNTVLYNAILLGLCKRRE 486



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 164/322 (50%), Gaps = 17/322 (5%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            L+ KLC  G+  +A+ V             +++N ++ G+C    LD   RL + M   
Sbjct: 99  ALIKKLCASGRTAEARRVLA-----ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMP-- 151

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
            M PD YTY+ LI GLC   R  +A ++L +M  RG  P+ V +T L++  CK       
Sbjct: 152 -MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRS----- 205

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
              K+A K++DEM   G  PD ITY ++++G C+EG ++ A++  K +   G E + V++
Sbjct: 206 -GYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSY 264

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G C   +  +AE+++ EM + G  P+  T+ M+I   C+ G  +    +L ++  
Sbjct: 265 NIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPK 324

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   +YN +++  CK  ++  A   ++ M+  G  PD ++YN LL   C+ G  + 
Sbjct: 325 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDA 384

Query: 434 FDKLQSEKGLVSDYACYTSLVS 455
             +L  +   + D  C   L+S
Sbjct: 385 AVELLHQ---LKDKGCTPVLIS 403



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 150/297 (50%), Gaps = 6/297 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   +  +G  P+   +N+++  LC   + +DA+ +  E  ++G     V+FN LI+  C
Sbjct: 248 FLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLC 307

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   ++    +   +   G  P+  +Y+ +++  CK+ ++D A   +  M  RG  P+ V
Sbjct: 308 RRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIV 367

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TL+   C+ G +D A ++    K  D+ CT    P  I+Y  ++DG  K G  + AL
Sbjct: 368 SYNTLLTALCRGGEVDAAVELLHQLK--DKGCT----PVLISYNTVIDGLTKAGKTKEAL 421

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  EM+ +G++ D + ++ + SG CR  ++ EA R   ++  +G++P+   Y  ++   
Sbjct: 422 ELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGL 481

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           CK  +T     L   M S+G +P   TY  L+ GL   G +K A  LL  +   GVV
Sbjct: 482 CKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVV 538



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 105/197 (53%), Gaps = 12/197 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F   ++  G  P +  +N L+  LC+ G++  A  +  +   +G     +S+NT+I+
Sbjct: 350 AMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVID 409

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  KA    E   L + M   G++PD+ TYS + +GLC+E+R+++A     ++ + G+ P
Sbjct: 410 GLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRP 469

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD---EMCTNGLNPDKITYTILLDGFCKEG 289
           N V++  ++ G CK          +E    +D    M +NG  P++ TYTIL++G   EG
Sbjct: 470 NTVLYNAILLGLCKR---------RETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEG 520

Query: 290 DLESALDIRKEMIKRGI 306
            ++ A ++  E+  RG+
Sbjct: 521 LVKEARELLGELCSRGV 537



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 15/215 (6%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           +LH    +K M   A  F  ++ +RG +   +  + L+      G +D A++    L+  
Sbjct: 337 ILHAFCKQKKM-DRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKD- 394

Query: 89  YFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
                 +GC         +ID + +       L    E++  G  P +  ++ +   LC+
Sbjct: 395 ------KGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCR 448

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
           E +I++A   F +    G+    V +N ++ G CK +       L   M  +G  P+  T
Sbjct: 449 EDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNEST 508

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           Y+ LI GL  E  + +A  LL E+C RG+    +I
Sbjct: 509 YTILIEGLTYEGLVKEARELLGELCSRGVVSKGLI 543


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 9/326 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           F+  +   CKE  +  A  + DE   +G     V++N LING CK   LDE  +  + M 
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+V T++ ++  +C   R  DAE LL +M  +G +P+ V F  LI+  C+ G + 
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLG 204

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
            A D      I+++M  +G  P+ ++Y  LL GFCKE  ++ A++    M+ RG   D V
Sbjct: 205 RAID------ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIV 258

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  L++  C+ GKV  A  +L ++   G  P   TY  VID   K G T+   +LL EM
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 318

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           R  G  P + TY++L++GL + G++  A      +  LG+ P+ ITYN ++ G CK    
Sbjct: 319 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378

Query: 432 E---DFDKLQSEKGLVSDYACYTSLV 454
           +   DF      K      A YT L+
Sbjct: 379 DRAIDFLAYMISKRCKPTEATYTILI 404



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 9/261 (3%)

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           +S  +   CKE+ +  A  LL EM  +G  P+ V +  LI+G CK GR+D      EA K
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD------EAIK 138

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            ++ M + G  P+ IT+ I+L   C  G    A  +  +M+++G     V F  LI+  C
Sbjct: 139 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLC 198

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           R G +  A  +L +M   G  P+  +Y  ++  FCK          L  M S G  P + 
Sbjct: 199 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIV 258

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE- 440
           TYN L+  LCK G++  A  +L+ +   G  P  ITYN +++G  K G  E   KL  E 
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 318

Query: 441 --KGLVSDYACYTSLVSKSSK 459
             KGL  D   Y+SLVS  S+
Sbjct: 319 RRKGLKPDIITYSSLVSGLSR 339


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 155/305 (50%), Gaps = 7/305 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V + N+++ +LC  G ++DA   FDE     L  T  +FN L+   CKA+  +E 
Sbjct: 215 GVEPDVVIHNLVIRQLCASGNLEDALAYFDELDD-SLDLTHFTFNPLVAALCKAERTEEA 273

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M      P ++TY++L++G  K  RLD+A L L E  ERG  P+ V +T++IDG
Sbjct: 274 IAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDG 333

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR++      E  +   EM   G  PD +TY  L+DGF K   +  A  + ++M++
Sbjct: 334 LCKLGRVE------EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQ 387

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G  +  V +  ++ G C+ G+V EA      M + G      TY+ ++D FC  G+   
Sbjct: 388 SGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSA 447

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L + M   G  P + +YN ++ GLC+ G+L  A    + +L   + PD  T+N  L 
Sbjct: 448 AVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLH 507

Query: 424 GHCKH 428
           G C+ 
Sbjct: 508 GLCQR 512



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 175/337 (51%), Gaps = 16/337 (4%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP +  F V+++ LC+E ++ +A  V +   + G     V++N  I+G CKA+ +D+ F+
Sbjct: 38  SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 97

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M+     P   TY+AL++GL K  RLD+A  +L +M E+G +P    +T +IDG  
Sbjct: 98  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLS 157

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK-- 303
           K GR++      EAR+I  +M  NG  PD   YT L+ G  K G L+ AL    +M++  
Sbjct: 158 KAGRVE------EARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENG 211

Query: 304 --RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             RG+E D V    +I   C  G + +A     E L   L     T+  ++   CK   T
Sbjct: 212 CARGVEPDVVIHNLVIRQLCASGNLEDALAYFDE-LDDSLDLTHFTFNPLVAALCKAERT 270

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +     +K+M      P + TY +L++G  K G+L  A + L   ++ G +PD +TY  +
Sbjct: 271 EEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSI 330

Query: 422 LEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           ++G CK G  E+    F ++++ +G   D   Y +L+
Sbjct: 331 IDGLCKLGRVEEGCERFHEMRN-RGYEPDAVTYAALI 366



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 181/394 (45%), Gaps = 44/394 (11%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA Q  + + +            L+D +++       +    ++++ G SP++  + V
Sbjct: 92  VDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTV 151

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF-RLKSVME-- 191
           ++  L K G++++A+ +F +    G    A  +  LI+G  K   LDE    L  ++E  
Sbjct: 152 VIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENG 211

Query: 192 -GSGMRPDV----------------------------------YTYSALINGLCKENRLD 216
              G+ PDV                                  +T++ L+  LCK  R +
Sbjct: 212 CARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTE 271

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A   + +M ER   P    +T+L+DG  K GR+D      EA   + E    G  PD +
Sbjct: 272 EAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLD------EALLQLKEAVERGFIPDAV 325

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT ++DG CK G +E   +   EM  RG E D V + ALI GF +   + +A R+ R+M
Sbjct: 326 TYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 385

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           L+ G      TY +++D  CK G     +     M   G +  V TY+ALM+G C  G +
Sbjct: 386 LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNV 445

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
             A  L   MLD G  P+ ++YNI++ G C+ G 
Sbjct: 446 SAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGK 479



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 171/336 (50%), Gaps = 9/336 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+++ +  L+    K G++ +A +   E  +RG    AV++ ++I+G CK   ++EG   
Sbjct: 287 PTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 346

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD  TY+ALI+G  K   +  A  +  +M + G   + V +  ++DG CK
Sbjct: 347 FHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCK 406

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR+       EA      M   G     +TY+ L+DGFC EG++ +A+++ + M+ RG 
Sbjct: 407 AGRV------AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGC 460

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT-KTGF 365
           E + V++  +I G CR GK+ +A     ++L+  L PD  T+   +   C+  DT   G 
Sbjct: 461 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGV 520

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L + M S G  P + +Y+ LM+G+C+ G L+    +   M+  GV PD + +N L+   
Sbjct: 521 ELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580

Query: 426 CKHGNPEDFDKL--QSEKGLVSDYACYTSLVSKSSK 459
           C  G  ++  ++  + E+    D   Y SL+   S+
Sbjct: 581 CIAGRVDEALEVFRELERRSAPDAWSYWSLLDALSR 616



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 150/307 (48%), Gaps = 6/307 (1%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           LG +++  + F  +R   +   A     LID  M+  +       Y ++L  G   S   
Sbjct: 337 LGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVT 396

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+++  LCK G++ +A   F    +RG  AT V+++ L++G C   N+     L   M 
Sbjct: 397 YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 456

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P++ +Y+ +I GLC+  +L  A     ++ +R L P+   F + + G C+  R+D
Sbjct: 457 DRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQ--RLD 514

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
             GD  E   + + M + G +P+  +Y+IL+DG C+ G LE  L+I  EM+ RG+  D V
Sbjct: 515 TVGDGVE---LFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVV 571

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            F  LI   C  G+V EA  + RE+ +    PD  +Y  ++D   +    +    L   M
Sbjct: 572 VFNTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDALSRCERMEEARLLSFHM 630

Query: 372 RSDGHLP 378
           +  G  P
Sbjct: 631 KLQGCAP 637



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 17/248 (6%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           D    +AL+NGLCK  +LD A LLL EM     +P+ V FT +I+G C+  R+D      
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKRLD------ 58

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA  +++     G  PD +TY + +DG CK   ++ A  + K+M ++      V +TAL+
Sbjct: 59  EAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALV 118

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G  + G++ EA  +L +M++ G  P   TYT+VID   K G  +   R+  +M  +G  
Sbjct: 119 DGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCR 178

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLD----LGVVPDDITYNILLEGHCKHGNPED 433
           P    Y AL++GL K G+L  A + L+ M++     GV PD + +N+++   C  GN ED
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLED 238

Query: 434 ----FDKL 437
               FD+L
Sbjct: 239 ALAYFDEL 246



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN-PEDFDKLQS--E 440
            AL+NGLCK GQL  A +LLD M      PD + + +++ G C+     E F  L+    
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 441 KGLVSDYACYTSLV 454
            G   DY  Y   +
Sbjct: 70  AGCEPDYVTYNVFI 83


>gi|297610360|ref|NP_001064440.2| Os10g0363500 [Oryza sativa Japonica Group]
 gi|110288965|gb|AAP53322.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679339|dbj|BAF26354.2| Os10g0363500 [Oryza sativa Japonica Group]
          Length = 512

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/406 (32%), Positives = 191/406 (47%), Gaps = 19/406 (4%)

Query: 11  STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYV 70
           S ++  L+    H    DLLH ++       +A L A+     G  +P L  D L  V  
Sbjct: 107 SALLASLLPSIPHHAFPDLLHHVLL------TARLTAA--RPDGGAVPAL--DVLFSVCA 156

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
               L  A   FR +R H        C   I   +    P + L F+ E+     SP++Y
Sbjct: 157 RGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFFREMRRCRISPNIY 216

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG--FRLKS 188
             N+++   C  G+  DA  V D+  + G+  T VSFNTLI  +C+   +D G   +LK 
Sbjct: 217 TANMVLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCR-DGVDAGPALQLKM 275

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            ME  G+ PDV TY  +I+GLCKE R+  A  +L EM  +G+ PN V + TLI G+   G
Sbjct: 276 KMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVALG 335

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
              MAG + E      EM  N +  D +TY  L+ G C EG ++    + +E+ +  +E 
Sbjct: 336 DNAMAGRVHE------EMVKNRVELDIVTYNALILGLCNEGKMKKVEHLLRELDRAKLEP 389

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   F+ALI G+C+      A ++L  M K G  P+  TY MVI  FCKN D +    ++
Sbjct: 390 NASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCKNKDLEGAVDVM 449

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            +M      P     N   +GL K  +L  A  L      L  +PD
Sbjct: 450 GDMLGRCIAPDKALLNEFFDGLWKAKKLHLAENLRSLNNGLKFIPD 495



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 146/335 (43%), Gaps = 40/335 (11%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V   +VL     +  K+  A + F      GL    VS N  I+     +  +      
Sbjct: 144 AVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFF 203

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M    + P++YT + ++   C   R  DA  +L +M E G+    V F TLI  +C++
Sbjct: 204 REMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCRD 263

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE------------------- 288
           G      D   A ++  +M   GL PD +TY  ++ G CKE                   
Sbjct: 264 GV-----DAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVM 318

Query: 289 ----------------GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
                           GD   A  + +EM+K  +ELD V + ALI G C  GK+ + E +
Sbjct: 319 PNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLCNEGKMKKVEHL 378

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           LRE+ +  L+P+ +T++ +I  +CK  +++   +LL  M+  G  P   TY  +++  CK
Sbjct: 379 LRELDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCK 438

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           +  L+ A  ++  ML   + PD    N   +G  K
Sbjct: 439 NKDLEGAVDVMGDMLGRCIAPDKALLNEFFDGLWK 473



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 14/254 (5%)

Query: 193 SGMRPD---VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +  RPD   V     L +   +  +L  A L    M   GL P  V     I       R
Sbjct: 136 TAARPDGGAVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRR 195

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
            ++A           EM    ++P+  T  ++L  FC  G    A ++  +M + G+   
Sbjct: 196 PEIA------LSFFREMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRT 249

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKV---GLKPDDATYTMVIDCFCKNGDTKTGFR 366
            V+F  LI+ +CR G  V+A   L+  +K+   GL PD  TY  +I   CK G      +
Sbjct: 250 TVSFNTLIAAYCRDG--VDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQ 307

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L EMR  G +P   TYN L++G    G    A  + + M+   V  D +TYN L+ G C
Sbjct: 308 VLSEMRVKGVMPNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLC 367

Query: 427 KHGNPEDFDKLQSE 440
             G  +  + L  E
Sbjct: 368 NEGKMKKVEHLLRE 381


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 183/369 (49%), Gaps = 8/369 (2%)

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
           A  C CL+  ++         G Y E+L        Y   V++  LC EG++++ + + +
Sbjct: 46  APDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGLIE 105

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
                G    AV +N LI+G+C+  ++  G  L   ME  G+ P V TY A+I+ L ++ 
Sbjct: 106 ARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKG 165

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            L   E LL EM  RGL+PN  I+ T+I+  CK      A DM      +++M  +  NP
Sbjct: 166 DLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDM------LNQMVKSRFNP 219

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D +T+  ++ GFC+EGD+  AL + +E I+RG+E + +++T LI GFC  G+ + A  +L
Sbjct: 220 DVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLL 279

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EM+  G  PD  T   +I     +G       + ++M     +P    YN L++GLCK 
Sbjct: 280 VEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKK 339

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS--EKGLVSDYACYT 451
             L  A  LL+ ML+  V PD   Y  L++G  +     D  K+    E+    D   Y 
Sbjct: 340 RMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPDIVAYN 399

Query: 452 SLVSKSSKY 460
            ++    K+
Sbjct: 400 VMIKGYCKF 408



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 174/370 (47%), Gaps = 55/370 (14%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-------- 176
           ++P V  FN ++   C+EG +++A  +  E  +RGL    +S+  LI+G C         
Sbjct: 217 FNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVAS 276

Query: 177 ---------------------------AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
                                      +  +++   ++  M    + PD   Y+ LI+GL
Sbjct: 277 DLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGL 336

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           CK+  L  A+ LL EM E+ + P+  I+TTLIDG  ++ +      + +ARKI + M   
Sbjct: 337 CKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDK------LSDARKIFEFMEEK 390

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              PD + Y +++ G+CK G ++ A+     M K G   D   +T L+ G+ + G +  +
Sbjct: 391 AC-PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISAS 449

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            R+L +M+K   KP+  TY  +I  +C  GDT +   L  +M+S+G  P V  Y  L+  
Sbjct: 450 LRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGS 509

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG--HCKHG--NPEDFDKLQSE----- 440
           L K  ++  A    + ML     P+D T + L+ G  +C+HG  N    D  Q+      
Sbjct: 510 LFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSAL 569

Query: 441 ----KGLVSD 446
               +GL+SD
Sbjct: 570 LDVFRGLISD 579



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 218/511 (42%), Gaps = 85/511 (16%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
            +  Y+T+++ L   +  SQA D+L+ +V  +        F   + T  T + G   +  
Sbjct: 185 NVQIYNTVINALCKCRSASQASDMLNQMVKSR--------FNPDVVTFNTMIAGFCRE-- 234

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
                  G + +A++  R   +            LI          V     +E++  G+
Sbjct: 235 -------GDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGH 287

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P +     L+H L   G++ DA +V ++  +R +   A  +N LI+G CK + L     
Sbjct: 288 TPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKN 347

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M    ++PD + Y+ LI+G  + ++L DA  +   M E+   P+ V +  +I G+C
Sbjct: 348 LLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKA-CPDIVAYNVMIKGYC 406

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G       MKEA   +  M   G  PD+ TYT L+DG+ K+GD+ ++L +  +M+KR 
Sbjct: 407 KFGM------MKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRR 460

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF---------- 355
            + +   + +LI G+C  G    AE +  +M   GL P+   YT++I             
Sbjct: 461 CKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAA 520

Query: 356 ---------------------------CKNG-------DTKTGFR------LLKEMRSDG 375
                                      C++G       DTK          + + + SDG
Sbjct: 521 AYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDG 580

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN----- 430
             P +  YNA++  LC+H  L  A  L D M + G +PD IT+  LL G    G      
Sbjct: 581 LDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGESGKWR 640

Query: 431 ---PEDFDKLQSEKGLVSDY-ACYTSLVSKS 457
              P +F   Q E  +++ Y A +   V+ S
Sbjct: 641 SALPNEFQ--QDEFEIITKYMALFNQHVTSS 669


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 180/375 (48%), Gaps = 32/375 (8%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
               + +IL  GY P +  +  L+  LC  G++K++    D    +G+    VS+ TLIN
Sbjct: 103 AFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLIN 162

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK        RL   +EG   RPDV  Y+ +I+GLCK+  + DA  L  EM E+ + P
Sbjct: 163 GLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFP 222

Query: 233 NDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIV 263
           N V +T+LI G C  G++D A                             G M+EA+ +V
Sbjct: 223 NVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLV 282

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
             M   G+ PD  TY  L+DG+    +   A ++   M + G+  D  +++ +ISG  + 
Sbjct: 283 AVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKM 342

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
             + EA  +   M    + PD   Y+ +ID  CK+G   +  + + EM   G  P V TY
Sbjct: 343 KMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITY 402

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE--- 440
            +L++ LCK  Q+  A  LL  + D G+  +  TYNIL++G CK G   D  K+  +   
Sbjct: 403 TSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLM 462

Query: 441 KGLVSDYACYTSLVS 455
           KG   D   Y+ +++
Sbjct: 463 KGHNVDVVTYSIMIN 477



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 220/487 (45%), Gaps = 55/487 (11%)

Query: 2   HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSK---KGMGSSASLFASILE------- 51
           H+ + +H +  M      H + S    L  LI S    + + S+ S+FA IL+       
Sbjct: 64  HYPIVIHLFQRME----LHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDI 119

Query: 52  ------TRGTHLPG-----------LVLDALMIVYVDLGFLDDAI-------QCFRLLRK 87
                  RG  L G           LV   + + +V  G L + +          RLLRK
Sbjct: 120 ITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRK 179

Query: 88  HYFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140
               I    CR        +ID + +  L       Y E+ +    P+V  +  L++  C
Sbjct: 180 ----IEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFC 235

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
             G++  A  + +E   + ++    +FNTL++G CK   + E   L +VM   G+ PDV+
Sbjct: 236 IVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVF 295

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY+AL++G         A+ + + M + G+T +   ++ +I G  K   +D A D+ E  
Sbjct: 296 TYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEG- 354

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
                M    + PD + Y+ L+DG CK G + SAL    EM  RG   + + +T+LI   
Sbjct: 355 -----MRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDAL 409

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C+  +V +A  +L+++   G++ +  TY +++D  CK+G      ++ +++   GH   V
Sbjct: 410 CKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDV 469

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            TY+ ++NGLCK      A  LL  M D G VPD I Y  ++    +    +  +KL  E
Sbjct: 470 VTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLRE 529

Query: 441 KGLVSDY 447
                DY
Sbjct: 530 MIDCVDY 536



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 191/397 (48%), Gaps = 21/397 (5%)

Query: 75  LDDAIQCF-RLLRKHYFRIPARGCRC--LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           L+DAI  F R+LR    R P    +   ++  +++T    + +  +  +  +G   +   
Sbjct: 30  LNDAIDSFNRMLR---MRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYIT 86

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
            N+L++  C   +I  A  VF +  K G     +++ TLI G C    + E       + 
Sbjct: 87  LNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLV 146

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G++ D  +Y  LINGLCK  +   A  LL ++      P+ V++ T+IDG CK+  + 
Sbjct: 147 SQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLV- 205

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                ++A  +  EM    + P+ +TYT L+ GFC  G L+ A  +  EM+ + +  +  
Sbjct: 206 -----RDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVC 260

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC---KNGDTKTGFRLL 368
            F  L+ G C+ GK+ EA+ ++  M+K G+ PD  TY  ++D +    + G  K  F ++
Sbjct: 261 TFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIM 320

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M   G    V +Y+ +++GL K   L  A  L + M +  V+PD + Y+ L++G CK 
Sbjct: 321 AQM---GVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKS 377

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           G      K   E   +G   +   YTSL+    K  Q
Sbjct: 378 GRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQ 414


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 162/317 (51%), Gaps = 9/317 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY+   L+  LC+ G+  DA  V       G      ++NTL+ G+C+   LD  
Sbjct: 65  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAA 124

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            RL + M    + PD YTY+ LI GLC   R+ DA  LL +M  R   P+ V +T L++ 
Sbjct: 125 RRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEA 181

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK      +    +A K++DEM   G  P+ +TY ++++G C+E  ++ A  I   +  
Sbjct: 182 VCK------SSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSS 235

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G + D V++T ++ G C   +  + E +  EM++    P++ T+ M++  FC+ G  + 
Sbjct: 236 YGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVER 295

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +L  M   G        N ++N +CK G++ +A   L+ M   G  PD I+Y  +L+
Sbjct: 296 AIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLK 355

Query: 424 GHCKHGNPEDFDKLQSE 440
           G C+ G  ED  +L +E
Sbjct: 356 GLCRAGRWEDAKELLNE 372



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 164/333 (49%), Gaps = 14/333 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  Y +  L+  LC  G++ DA  + D+  +R    + V++  L+   CK+    +  ++
Sbjct: 135 PDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKV 194

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  P++ TY+ +ING+C+E+R+DDA  +L+ +   G  P+ V +TT++ G C 
Sbjct: 195 LDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCA 254

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R       ++   +  EM  N   P+++T+ +L+  FC+ G +E A+++   M + G 
Sbjct: 255 AKR------WEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGC 308

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +      +I+  C+ G+V +A   L  M   G  PD  +YT V+   C+ G  +    
Sbjct: 309 TANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKE 368

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL EM      P   T+N  +  LC+ G +  A +L++ M + G     +TYN L+ G C
Sbjct: 369 LLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFC 428

Query: 427 KHGNP----EDFDKLQSEKGLVSDYACYTSLVS 455
             G      E F+ L  E   ++    YT+L++
Sbjct: 429 VQGRVDSALELFNSLPCEPNTIT----YTTLLT 457



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 164/339 (48%), Gaps = 26/339 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+++    P+   F++L+   C+ G ++ A  V D   + G  A     N +IN  C
Sbjct: 264 LFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSIC 323

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D+ F   + M   G  PD  +Y+ ++ GLC+  R +DA+ LL+EM  +   PN+V
Sbjct: 324 KQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEV 383

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEA-------------RKIVDEMCTNG------------ 270
            F T I   C+ G ID A  + E                +V+  C  G            
Sbjct: 384 TFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL 443

Query: 271 -LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P+ ITYT LL G C    L++A ++  EM++    L+ V F  L+S FC+ G V EA
Sbjct: 444 PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEA 503

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++++M++ G  P+  T+  ++D   ++ +++    LL  + S G      TY+++++ 
Sbjct: 504 IELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDV 563

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           L +  +++ A  +   + D+G+ P  + YN +L   CK 
Sbjct: 564 LSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKR 602



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 175/383 (45%), Gaps = 34/383 (8%)

Query: 60  LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           +  D L+  +   G ++ AI+    + +H        C  +I+ + +         F   
Sbjct: 278 VTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNN 337

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +  YG SP    +  ++  LC+ G+ +DA+ + +E  ++      V+FNT I   C+   
Sbjct: 338 MGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGL 397

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM-CERGLTPNDVIFT 238
           +D+   L   M   G    + TY+AL+NG C + R+D A  L + + CE    PN + +T
Sbjct: 398 IDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE----PNTITYT 453

Query: 239 TLIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCTN 269
           TL+ G C   R+D A ++                             +EA ++V +M  +
Sbjct: 454 TLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEH 513

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  P+ IT+  LLDG  ++ + E AL++   ++ +GI LD + +++++    R  ++ EA
Sbjct: 514 GCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEA 573

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
            +M   +  +G++P    Y  ++   CK  +T         M S+  +P   TY  L+ G
Sbjct: 574 VQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEG 633

Query: 390 LCKHGQLKNANMLLDTMLDLGVV 412
           L + G LK A  +L  +   GV+
Sbjct: 634 LAREGLLKEARYVLSELCSRGVL 656



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 185/388 (47%), Gaps = 51/388 (13%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
            G  +++LD     G +P++  +NV+++ +C+E ++ DA+ + +     G     VS+ T
Sbjct: 188 FGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTT 247

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL------------------------ 205
           ++ G C AK  ++   L   M  +   P+  T+  L                        
Sbjct: 248 VLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG 307

Query: 206 -----------INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
                      IN +CK+ R+DDA   L+ M   G +P+ + +TT++ G C+ GR     
Sbjct: 308 CTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGR----- 362

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             ++A+++++EM      P+++T+   +   C++G ++ A+ + ++M + G  +  V + 
Sbjct: 363 -WEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYN 421

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           AL++GFC  G+V  A  +   +     +P+  TYT ++   C          LL EM  +
Sbjct: 422 ALVNGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQN 478

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
                V T+N L++  C+ G ++ A  L+  M++ G  P+ IT+N LL+G  +  N E+ 
Sbjct: 479 DCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEA 538

Query: 435 DKLQS---EKGLVSDYACYTSLVSKSSK 459
            +L      KG+  D   Y+S+V   S+
Sbjct: 539 LELLHGLVSKGISLDTITYSSIVDVLSR 566



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI-F 237
           +L E  RL       G  PDVY  + LI  LC+  R  DA  +L    E    P DV  +
Sbjct: 50  DLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTA-EGSGAPVDVFAY 108

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            TL+ G+C+ GR+D       AR+++  M    + PD  TYT L+ G C  G +  AL +
Sbjct: 109 NTLVAGYCRYGRLD------AARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSL 159

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +M++R  +   V +T L+   C+     +A ++L EM   G  P+  TY ++I+  C+
Sbjct: 160 LDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCR 219

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
                   ++L  + S G  P   +Y  ++ GLC   + ++  +L   M++   VP+++T
Sbjct: 220 EDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVT 279

Query: 418 YNILLEGHCKHGNPE 432
           +++L+   C+ G  E
Sbjct: 280 FDMLVRFFCRGGMVE 294



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 9/238 (3%)

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
           S+ +  L   + L +A  L+     RG  P+  + T LI   C+ GR        +A ++
Sbjct: 39  SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRT------SDAARV 92

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
           +     +G   D   Y  L+ G+C+ G L++A   R+ +    +  D   +T LI G C 
Sbjct: 93  LRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAA---RRLIASMPVPPDAYTYTPLIRGLCD 149

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            G+V +A  +L +ML+   +P   TYT++++  CK+       ++L EMR+ G  P + T
Sbjct: 150 RGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVT 209

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           YN ++NG+C+  ++ +A  +L+ +   G  PD ++Y  +L+G C     ED + L  E
Sbjct: 210 YNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCE 267



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 1/208 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL  +   + + ++A L A +++     L  +  + L+  +   GF+++AI+  + + +H
Sbjct: 455 LLTGLCHAERLDAAAELLAEMMQN-DCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEH 513

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                      L+D +         L     ++  G S     ++ ++  L +E +I++A
Sbjct: 514 GCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEA 573

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +F      G+   AV +N +++  CK    D      + M  +   P+  TY  LI G
Sbjct: 574 VQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEG 633

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVI 236
           L +E  L +A  +L E+C RG+    +I
Sbjct: 634 LAREGLLKEARYVLSELCSRGVLSKSLI 661


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 209/415 (50%), Gaps = 12/415 (2%)

Query: 44  SLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           +LF  + E+R   LP +V    L++    L   +  I  FR +              LID
Sbjct: 59  TLFCDMAESRP--LPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLID 116

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              R +  ++ L    +++  G+ PS+  F  L++  C   +I++A  + D+    G   
Sbjct: 117 CFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEP 176

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             V +NT+I+  C+ + +D    + + ME  G+RPDV TY++LI  L    +   +  +L
Sbjct: 177 NVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARIL 236

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M   G+ P+ + F+ +ID   K G+      + EA+K  DEM    ++P+ +TY  L+
Sbjct: 237 SDMMRMGIHPDVITFSAMIDVFGKEGQ------LLEAKKQYDEMIQRSVDPNIVTYNSLI 290

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G C  G L+ A  +   M+ +G   + V +  L++G+C+  +V +A ++L  M   G+ 
Sbjct: 291 NGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVD 350

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            D  TY  +   +C+ G      ++L  M S G LP + T+N L++GLC+HG+++ A + 
Sbjct: 351 GDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVK 410

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           L+ +     V   ITYNI+++G CK    ED   L    + KG+  D   YT+++
Sbjct: 411 LEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMM 465



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 170/306 (55%), Gaps = 6/306 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+  GY P+V ++N ++  LC+  ++  A  V +   K G+    +++N+LI     + 
Sbjct: 168 QIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSG 227

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 R+ S M   G+ PDV T+SA+I+   KE +L +A+    EM +R + PN V + 
Sbjct: 228 KWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYN 287

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LI+G C +G +D      EA+K+++ M + G  P+ +TY  L++G+CK   ++ A+ I 
Sbjct: 288 SLINGLCIHGLLD------EAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKIL 341

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M   G++ D   +  L  G+C+ G+   AE++L  M+  G+ PD  T+ M++D  C++
Sbjct: 342 CVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEH 401

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +     L++++    +  + TYN ++ G+CK  ++++A  L  ++   GV PD ITY
Sbjct: 402 GKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITY 461

Query: 419 NILLEG 424
             ++ G
Sbjct: 462 TTMMIG 467



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 161/313 (51%), Gaps = 9/313 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F +  +     + V F+ L+    K K  +    L   +E  G+  D+Y++S
Sbjct: 53  KFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFS 112

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+ +RL  A   L +M + G  P+ V F +L++G C   RI      +EA  +V
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRI------QEAMSLV 166

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D++   G  P+ + Y  ++D  C+   +++ALD+   M K GI  D + + +LI+     
Sbjct: 167 DQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHS 226

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           GK   + R+L +M+++G+ PD  T++ +ID F K G      +   EM      P + TY
Sbjct: 227 GKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTY 286

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           N+L+NGLC HG L  A  +L+ M+  G  P+ +TYN L+ G+CK    +D  K+    S 
Sbjct: 287 NSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSH 346

Query: 441 KGLVSDYACYTSL 453
            G+  D   Y +L
Sbjct: 347 DGVDGDTFTYNTL 359



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 6/267 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N L+ +L   GK   +  +  +  + G+H   ++F+ +I+   K   L E 
Sbjct: 208 GIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEA 267

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +    M    + P++ TY++LINGLC    LD+A+ +L+ M  +G  PN V + TL++G
Sbjct: 268 KKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNG 327

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK+ R+D      +A KI+  M  +G++ D  TY  L  G+C+ G   +A  +   M+ 
Sbjct: 328 YCKSKRVD------DAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVS 381

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D   F  L+ G C  GK+ +A   L ++ K        TY ++I   CK    + 
Sbjct: 382 CGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVED 441

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGL 390
            + L   +   G  P V TY  +M GL
Sbjct: 442 AWYLFCSLALKGVSPDVITYTTMMIGL 468


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 178/370 (48%), Gaps = 39/370 (10%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDA-----QMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + GY+P V+ +N L+  LC E K ++A      M  D  G        VS++T+I+G  K
Sbjct: 158 ELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTAD--GGYNCSPNVVSYSTIIDGFFK 215

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +D+ + L   M G G  PDV TYS+LI+GLCK   ++ AE +L  M ++G+ PN   
Sbjct: 216 EGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRT 275

Query: 237 FTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMC 267
           +  +I G+C  G+++ A                             G   EAR + D M 
Sbjct: 276 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMV 335

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G  P+   Y ILL G+  +G L    D+   MI+ GI  ++ AF  LI  + + G V 
Sbjct: 336 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 395

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A     EM + GL+PD  +Y+ VI   CK G  +       +M S+G  P + ++ +L+
Sbjct: 396 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLI 455

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLV 444
           +GLC  G+ K    L   M++ G+ PD I  N +++  CK G     +DF  +    G+ 
Sbjct: 456 HGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVK 515

Query: 445 SDYACYTSLV 454
            +   Y +L+
Sbjct: 516 PNVVSYNTLI 525



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 6/321 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+   G  P V  ++ ++H LCK G+++DA   F++    GL    +SF +LI+G C 
Sbjct: 401 FTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCS 460

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
                +   L   M   G+ PD    + +++ LCKE R+ +A+     +   G+ PN V 
Sbjct: 461 IGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVS 520

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           + TLIDG+C        G M E+ K  D M + GL PD  TY  LL+G+ K G +E AL 
Sbjct: 521 YNTLIDGYC------FVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALA 574

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM ++ ++   +    ++ G  + G++V A  +  +M+  G +    TY  V+   C
Sbjct: 575 LYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLC 634

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +N       R+ +++RS      V T+N ++N L K G++  A  L   M+  G VP  I
Sbjct: 635 ENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVI 694

Query: 417 TYNILLEGHCKHGNPEDFDKL 437
           TY+++++   + G  E+ D L
Sbjct: 695 TYSLMIKSRIEEGLLEESDDL 715



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 161/357 (45%), Gaps = 41/357 (11%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P V  ++ L+  LCK   +  A+ +      +G+     ++N +I G+C   
Sbjct: 228 EMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLG 287

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI-- 236
            L+E  RL   M GSG++PDV TY  LI   CK  R  +A  +   M  +G  PN  I  
Sbjct: 288 QLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYH 347

Query: 237 ---------------------------------FTTLIDGHCKNGRIDMAGDMKEARKIV 263
                                            F  LI  + K+G +D      +A    
Sbjct: 348 ILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD------KAMTAF 401

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            EM  NGL PD ++Y+ ++   CK G +E A+    +M+  G+  + ++FT+LI G C  
Sbjct: 402 TEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSI 461

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  + E +  EM+  G+ PD      ++D  CK G           +   G  P V +Y
Sbjct: 462 GEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSY 521

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N L++G C  G++  +    D M+ +G+ PD  TYN LL G+ K+G  ED   L  E
Sbjct: 522 NTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYRE 578



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 172/365 (47%), Gaps = 23/365 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD-------AQMVFDEFGKRGLHATAV 165
            L  + E+L      SV+ FN ++  + +             A  +F+   + G++  A 
Sbjct: 33  ALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMMAA 92

Query: 166 S---FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELL 221
           +      LI   C    LD  F   ++    G R    T + LI GLC   R DDA +++
Sbjct: 93  NRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMV 152

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG---LNPDKITY 278
              M E G TP+   +  LI G C   +       +EA +++  M  +G    +P+ ++Y
Sbjct: 153 FRRMPELGYTPDVFSYNALIKGLCVEKK------SQEALELLLHMTADGGYNCSPNVVSY 206

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           + ++DGF KEG+++ A  +  EMI +G   D V +++LI G C+   + +AE +L+ M  
Sbjct: 207 STIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFD 266

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            G+ P+  TY ++I  +C  G  +   RLLK+M   G  P V TY  L+   CK G+   
Sbjct: 267 KGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAE 326

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
           A  + D+M+  G  P+   Y+ILL G+   G   +  D   L    G+  ++  +  L+ 
Sbjct: 327 ARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILIC 386

Query: 456 KSSKY 460
             +K+
Sbjct: 387 AYAKH 391



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 138/286 (48%), Gaps = 6/286 (2%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+++ G  P     N +M  LCKEG++ +AQ  FD     G+    VS+NTLI+G+C  
Sbjct: 472 FEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFV 531

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             +DE  +    M   G+RPD +TY+AL+NG  K  R++DA  L  EM  +     DV F
Sbjct: 532 GKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRK-----DVKF 586

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             +      +G +  AG +  AR++  +M   G      TY  +L G C+   ++ AL +
Sbjct: 587 CAITSNIILHG-LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRM 645

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            +++  +  ELD   F  +I+   + G++ EA+ +   M+  G  P   TY+++I    +
Sbjct: 646 FEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIE 705

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
            G  +    L   M  +G        N ++  L + G ++ A   L
Sbjct: 706 EGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYL 751



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 85/192 (44%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL+  Y   G ++DA+  +R + +   +  A     ++  + +          Y++++D
Sbjct: 557 NALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVD 616

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G    +  +N ++  LC+   + +A  +F++   +       +FN +IN   K   +DE
Sbjct: 617 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDE 676

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L S M   G  P V TYS +I    +E  L++++ L   M + G   +  +   +I 
Sbjct: 677 AKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIR 736

Query: 243 GHCKNGRIDMAG 254
              + G +  AG
Sbjct: 737 RLLEKGDVRRAG 748


>gi|20279450|gb|AAM18730.1|AC092548_8 hypothetical protein [Oryza sativa Japonica Group]
          Length = 729

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 191/408 (46%), Gaps = 23/408 (5%)

Query: 11  STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR--GTHLPGLVLDALMIV 68
           S ++  L+    H    DLLH ++          L A +   R  G  +P L  D L  V
Sbjct: 324 SALLASLLPSIPHHAFPDLLHHVL----------LTARLTAARPDGGAVPAL--DVLFSV 371

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                 L  A   FR +R H        C   I   +    P + L F+ E+     SP+
Sbjct: 372 CARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFFREMRRCRISPN 431

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG--FRL 186
           +Y  N+++   C  G+  DA  V D+  + G+  T VSFNTLI  +C+   +D G   +L
Sbjct: 432 IYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCR-DGVDAGPALQL 490

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K  ME  G+ PDV TY  +I+GLCKE R+  A  +L EM  +G+ PN V + TLI G+  
Sbjct: 491 KMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVA 550

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G   MAG      ++ +EM  N +  D +TY  L+ G C EG ++    + +E+ +  +
Sbjct: 551 LGDNAMAG------RVHEEMVKNRVELDIVTYNALILGLCNEGKMKKVEHLLRELDRAKL 604

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E +   F+ALI G+C+      A ++L  M K G  P+  TY MVI  FCKN D +    
Sbjct: 605 EPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCKNKDLEGAVD 664

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           ++ +M      P     N   +GL K  +L  A  L      L  +PD
Sbjct: 665 VMGDMLGRCIAPDKALLNEFFDGLWKAKKLHLAENLRSLNNGLKFIPD 712



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 146/335 (43%), Gaps = 40/335 (11%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V   +VL     +  K+  A + F      GL    VS N  I+     +  +      
Sbjct: 361 AVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFF 420

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M    + P++YT + ++   C   R  DA  +L +M E G+    V F TLI  +C++
Sbjct: 421 REMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCRD 480

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE------------------- 288
           G      D   A ++  +M   GL PD +TY  ++ G CKE                   
Sbjct: 481 GV-----DAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVM 535

Query: 289 ----------------GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
                           GD   A  + +EM+K  +ELD V + ALI G C  GK+ + E +
Sbjct: 536 PNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLCNEGKMKKVEHL 595

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           LRE+ +  L+P+ +T++ +I  +CK  +++   +LL  M+  G  P   TY  +++  CK
Sbjct: 596 LRELDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCK 655

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           +  L+ A  ++  ML   + PD    N   +G  K
Sbjct: 656 NKDLEGAVDVMGDMLGRCIAPDKALLNEFFDGLWK 690



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 14/254 (5%)

Query: 193 SGMRPD---VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +  RPD   V     L +   +  +L  A L    M   GL P  V     I       R
Sbjct: 353 TAARPDGGAVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRR 412

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
            ++A           EM    ++P+  T  ++L  FC  G    A ++  +M + G+   
Sbjct: 413 PEIA------LSFFREMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRT 466

Query: 310 NVAFTALISGFCRGGKVVEAERMLR---EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            V+F  LI+ +CR G  V+A   L+   +M + GL PD  TY  +I   CK G      +
Sbjct: 467 TVSFNTLIAAYCRDG--VDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQ 524

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L EMR  G +P   TYN L++G    G    A  + + M+   V  D +TYN L+ G C
Sbjct: 525 VLSEMRVKGVMPNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLC 584

Query: 427 KHGNPEDFDKLQSE 440
             G  +  + L  E
Sbjct: 585 NEGKMKKVEHLLRE 598


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 162/299 (54%), Gaps = 6/299 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +  L+   CK GK++ A +++    + GL    V++ TLI G C   +L+  
Sbjct: 244 GCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHA 303

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           FRL   ME  G+ P+ +T   LI+ LCK  R+++A+  L  + ++G+  N VI+T++ID 
Sbjct: 304 FRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDA 363

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+G+ D A ++ +  KI+    T G  PD   Y+ L+DG C+E  L  A+ +  +MI+
Sbjct: 364 LCKSGKFDGAHNLMQ--KII----TEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIE 417

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G++ + V FT LI    R  +    + +   M   G+KPD  TYT+ I  +C++G  + 
Sbjct: 418 SGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMED 477

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              ++ +M   G  P + TYN L+ G    G +  A   L  M+D G  P+D +Y +LL
Sbjct: 478 AESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL 536



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 181/376 (48%), Gaps = 16/376 (4%)

Query: 89  YFRIPARGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
           +  +P RGC         L+  +    +    +  +  +   G +P  +V+++++H LC 
Sbjct: 132 FLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCG 191

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
            G+  +A  +  +   +G       +N LI+G+C   +L+    +   M+  G  P+V T
Sbjct: 192 AGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRT 251

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ LI G CK  +++ A +L   M E GL PN V +TTLI G C  G ++       A +
Sbjct: 252 YTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLE------HAFR 305

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++  M   GL P++ T  +L+D  CK G +E A      ++++GI+++ V +T++I   C
Sbjct: 306 LLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALC 365

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + GK   A  ++++++  G  PD   Y+ +ID  C+         LL +M   G      
Sbjct: 366 KSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAV 425

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE- 440
            +  L++   +  +  +  M+ D M   GV PD +TY + +  +C+ G  ED + +  + 
Sbjct: 426 PFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQM 485

Query: 441 --KGLVSDYACYTSLV 454
              G+  +   Y +L+
Sbjct: 486 IDHGVRPNLTTYNTLI 501



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 164/306 (53%), Gaps = 6/306 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P+V V+N L+   C  G ++ A  +F     +G      ++  LI G CK+  ++  
Sbjct: 209 GFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERA 268

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L S M  +G+ P+V TY+ LI G C E  L+ A  LLH M   GL PN+     LID 
Sbjct: 269 MVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDA 328

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK+GRI+      EA++ +  +   G+  +++ YT ++D  CK G  + A ++ +++I 
Sbjct: 329 LCKHGRIE------EAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIIT 382

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G   D   +++LI G CR  K++EA  +L +M++ G++ +   +T++ID   +   + +
Sbjct: 383 EGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDS 442

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +   M + G  P V TY   +   C+ G++++A  ++  M+D GV P+  TYN L++
Sbjct: 443 PKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIK 502

Query: 424 GHCKHG 429
           G+   G
Sbjct: 503 GYANLG 508



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 172/352 (48%), Gaps = 9/352 (2%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           RT L       +L +   G + + + +  L+  LC  G +++A  VF      G    + 
Sbjct: 121 RTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSH 180

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
            ++ +++G C A    E   L +   G G  P+V  Y+ALI+G C    L+ A  +   M
Sbjct: 181 VYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGM 240

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             +G  PN   +T LI G CK+G+++       A  +   M   GL P+ +TYT L+ G 
Sbjct: 241 QSKGCLPNVRTYTQLICGFCKSGKVE------RAMVLYSRMIEAGLAPNVVTYTTLIQGQ 294

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C EG LE A  +   M   G+  +      LI   C+ G++ EA++ L  +++ G+K + 
Sbjct: 295 CSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQ 354

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             YT +ID  CK+G       L++++ ++G +P    Y++L++GLC+  +L  A  LL+ 
Sbjct: 355 VIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLND 414

Query: 406 MLDLGVVPDDITYNILLEGHCKH---GNPEDFDKLQSEKGLVSDYACYTSLV 454
           M++ GV  + + + IL++ H +     +P+      +  G+  D   YT  +
Sbjct: 415 MIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFI 466



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 162/330 (49%), Gaps = 9/330 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +++ +  L++  C  G +  A+       + GL   + ++ + + G+C+        RL 
Sbjct: 73  NLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLF 132

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +M   G     +TY+AL+ GLC    + +A  +   M   G  P+  +++ ++ G C  
Sbjct: 133 LLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGA 192

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR   AG   EA  ++ +    G  P+   Y  L+DG+C  GDLE A+DI K M  +G  
Sbjct: 193 GR---AG---EAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCL 246

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            +   +T LI GFC+ GKV  A  +   M++ GL P+  TYT +I   C  G  +  FRL
Sbjct: 247 PNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRL 306

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L  M + G  P   T   L++ LCKHG+++ A   L +++  G+  + + Y  +++  CK
Sbjct: 307 LHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCK 366

Query: 428 HGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            G  +    L  +   +G V D   Y+SL+
Sbjct: 367 SGKFDGAHNLMQKIITEGFVPDAHMYSSLI 396



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 22/337 (6%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+  G+ P  ++++ L+  LC+E K+ +A  + ++  + G+ A AV F  LI+ H +  
Sbjct: 379 KIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREF 438

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D    +   M  +G++PDV TY+  I   C++ R++DAE ++ +M + G+ PN   + 
Sbjct: 439 RSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYN 498

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG--------- 289
           TLI G+   G +       +A   +  M  NG  P+  +YT+LL    K+          
Sbjct: 499 TLIKGYANLGLVS------QAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADS 552

Query: 290 -------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
                  D++   ++ +E+IK      +  +   I    +  ++ EA+  L  M    L 
Sbjct: 553 ISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLT 612

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P +  YT +I+C  +    K   R L  M    +LP +E+Y  ++  LC+ G    A  +
Sbjct: 613 PSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSI 672

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
              +L      D+I + IL++G  + GN  D  +L S
Sbjct: 673 FGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRLLS 709



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 156/393 (39%), Gaps = 78/393 (19%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV- 68
           Y++M+  L        A +L+  I+++ G    A +++S+++  G      +L+A+ ++ 
Sbjct: 357 YTSMIDALCKSGKFDGAHNLMQKIITE-GFVPDAHMYSSLID--GLCRENKLLEAISLLN 413

Query: 69  -YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
             ++ G   +A+    L+ KH     +   + + DRM                   G  P
Sbjct: 414 DMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAA----------------GVKP 457

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            V  + V +   C++G+++DA+ +  +    G+     ++NTLI G+     + + F   
Sbjct: 458 DVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSL 517

Query: 188 SVMEGSGMRPD------------------------------------------------- 198
             M  +G +P+                                                 
Sbjct: 518 KNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCS 577

Query: 199 --VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
              Y Y   I  L K +RL++A+  L  M    LTP++ ++T +I+  C   ++     +
Sbjct: 578 SASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIEC-CYRMKL-----L 631

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           KEA + +D M      P   +Y  ++   C+EG   +A  I  +++ +    D +A+  L
Sbjct: 632 KEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKIL 691

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
           I G  + G   +  R+L  M +   +P  A Y+
Sbjct: 692 IDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYS 724



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           C+I+   R  L    L F   ++   Y P +  +  ++  LC+EG    A+ +F +   +
Sbjct: 620 CMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSK 679

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
             +   +++  LI+G  +  N  +  RL S ME    RP    YS L
Sbjct: 680 EYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYSRL 726


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 182/360 (50%), Gaps = 22/360 (6%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           + LGF  DA+    L+             C  D+  R       + F+ E++  GY P++
Sbjct: 146 IKLGFEPDAVTFSSLING----------LCFEDKFARA------MEFFDEMVASGYQPNL 189

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           + +N ++   CK GK   A  +  +  K G     V +NT+I+G CK + + E   + S 
Sbjct: 190 HTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSE 249

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ++G G+RPDV+TYS L++GLC  ++ ++A  L +EM    + P+ V F  L+D  CK G 
Sbjct: 250 IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGM 309

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 + EA+ I+  M   G+ P+  TY  L++G+C +  +  A  +   MI +G   +
Sbjct: 310 ------LSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPN 363

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V++  LI+G+C+  ++ EA  +  EM   GL P+   Y  +I   C+ G       L K
Sbjct: 364 VVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFK 423

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M++ G  P + T   L++ LCK G L NA  L   M D  + P+ +TY+IL+    K G
Sbjct: 424 DMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSG 483



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
            R+ R +     LG   +I+  G+ P    F+ L++ LC E K   A   FDE    G  
Sbjct: 130 SRLQRVDFAFSVLG---KIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQ 186

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
               ++NT+I G CK         L   M+ +G RPD+  Y+ +I+GLCK+  + +A  +
Sbjct: 187 PNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDI 246

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
             E+  +G+ P+   ++ L+ G C + +       +EA  + +EM +  + PD +T+ IL
Sbjct: 247 FSEIKGKGVRPDVFTYSILMHGLCNSDQ------KEEASALFNEMMSLNIMPDVVTFNIL 300

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +D  CKEG L  A  I K MI++G+E +   + +L++G+C   KV EA  +   M+  G 
Sbjct: 301 VDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGC 360

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            P+  +Y ++I+ +CK         L  EM   G +P    YN L++GLC+ G+   A  
Sbjct: 361 MPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARE 420

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHG 429
           L   M   G  PD +T  ILL+  CK G
Sbjct: 421 LFKDMQAQGCSPDLVTCTILLDSLCKLG 448



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 153/293 (52%), Gaps = 11/293 (3%)

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           FN LIN   + + +D  F +   +   G  PD  T+S+LINGLC E++   A     EM 
Sbjct: 122 FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMV 181

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
             G  PN   + T+I G CK G+  +A  +      + +M   G  PD + Y  ++DG C
Sbjct: 182 ASGYQPNLHTYNTIIKGFCKIGKTTVAVGL------LKKMDKAGGRPDIVIYNTIIDGLC 235

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K+  +  ALDI  E+  +G+  D   ++ L+ G C   +  EA  +  EM+ + + PD  
Sbjct: 236 KDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVV 295

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           T+ +++D  CK G       ++K M   G  P   TYN+LMNG C   ++  A M+ D M
Sbjct: 296 TFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAM 355

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           +  G +P+ ++YNIL+ G+CK    ++    FD++ S +GL+ +   Y +L+S
Sbjct: 356 ITKGCMPNVVSYNILINGYCKAQRIDEARELFDEM-SFRGLIPNTFNYNTLIS 407



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 161/316 (50%), Gaps = 10/316 (3%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ FN+L++   +  ++  A  V  +  K G    AV+F++LING C             
Sbjct: 119 VFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFD 178

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  SG +P+++TY+ +I G CK  +   A  LL +M + G  P+ VI+ T+IDG CK+ 
Sbjct: 179 EMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDR 238

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            +       EA  I  E+   G+ PD  TY+IL+ G C     E A  +  EM+   I  
Sbjct: 239 LVS------EALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMP 292

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V F  L+   C+ G + EA+ +++ M++ G++P+ ATY  +++ +C          + 
Sbjct: 293 DVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVF 352

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M + G +P V +YN L+NG CK  ++  A  L D M   G++P+   YN L+ G C+ 
Sbjct: 353 DAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQA 412

Query: 429 GN----PEDFDKLQSE 440
           G      E F  +Q++
Sbjct: 413 GRHCEARELFKDMQAQ 428



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 6/192 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D++ +  + +   G    +++ G  P+   +N LM+  C + K+ +A+MVFD    +G
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                VS+N LING+CKA+ +DE   L   M   G+ P+ + Y+ LI+GLC+  R  +A 
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  +M  +G +P+ V  T L+D  CK G +D       A ++   M  + L P+ +TY 
Sbjct: 420 ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLD------NALRLFRAMQDSCLKPNLVTYD 473

Query: 280 ILLDGFCKEGDL 291
           IL+    K G +
Sbjct: 474 ILIRAMYKSGKI 485



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 44/284 (15%)

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C    ++DA    + M  +   P  V F  L+       RI   G +    K ++ +   
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALV---RIKHYGTVLSLSKRIELL--- 113

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
            +  D   + IL++ F +   ++ A  +  ++IK G E D V F++LI+G C   K   A
Sbjct: 114 RIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARA 173

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
                EM+  G +P+  TY  +I  FCK G T     LLK+M   G  P +  YN +++G
Sbjct: 174 MEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDG 233

Query: 390 LCK------------------------------HG-----QLKNANMLLDTMLDLGVVPD 414
           LCK                              HG     Q + A+ L + M+ L ++PD
Sbjct: 234 LCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPD 293

Query: 415 DITYNILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
            +T+NIL++  CK G     +   K+  EKG+  +YA Y SL++
Sbjct: 294 VVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMN 337


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 176/346 (50%), Gaps = 11/346 (3%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFN 168
           P + +  +L I  +G  PSV  FN L++ L +  +     ++F    K+ G+     + N
Sbjct: 186 PKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCN 245

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L+   CK  ++D   R+   M   G  P+V TY+ ++ G   +  +  A  +  E+ +R
Sbjct: 246 ILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDR 305

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G  P+   +T L+DG+CK GR        +A K++DEM  N + P+ +TY ++++ +CKE
Sbjct: 306 GWVPDPTTYTILMDGYCKKGR------FMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKE 359

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
                 L++  +M+++     +     +I   C  GKV  A  + +++LK    PD+A  
Sbjct: 360 KKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAIT 419

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           + +I   CK G      +L  E    G +P+  TYNAL+ G+C+ G+L  A  L D M++
Sbjct: 420 STLIHWLCKEGKVWEARKLFDEFEK-GSIPSTLTYNALIAGMCEGGELPEAARLWDNMVE 478

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            G VP+  TYN+L++G CK GN  +  ++  E    G + + A Y 
Sbjct: 479 KGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 8/303 (2%)

Query: 82  FRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140
           F+  RK +  +P    C  L+  + + N     +    E+   G+ P+V  +  ++    
Sbjct: 228 FKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYV 287

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
            +G +  A+ VF E   RG      ++  L++G+CK     +  ++   ME + + P+  
Sbjct: 288 SKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDV 347

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY  +I   CKE +  +   LL +M E+   P+  +   +ID  C+ G++++A ++   +
Sbjct: 348 TYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACEL--WK 405

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           K++ + CT    PD    + L+   CKEG +  A  +  E  K  I    + + ALI+G 
Sbjct: 406 KLLKKNCT----PDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIP-STLTYNALIAGM 460

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C GG++ EA R+   M++ G  P+  TY M+I  FCK G+ + G R+++EM  +G LP  
Sbjct: 461 CEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNK 520

Query: 381 ETY 383
            TY
Sbjct: 521 ATY 523



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 166/352 (47%), Gaps = 17/352 (4%)

Query: 114 LGFYLEILDYG------YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           L   L+I D+       ++ +   +  ++ KL K    +  + +  +  K  +      F
Sbjct: 114 LDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLF 173

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            T+I  +  A       R    +   G++P V +++ L+N L +  R D   L+    C 
Sbjct: 174 ITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKN-CR 232

Query: 228 R--GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
           +  G+ PN      L+   CK   ID       A ++++EM   G  P+ +TYT +L G+
Sbjct: 233 KKFGIVPNVFTCNILVKALCKKNDID------AAIRVLEEMPAMGFIPNVVTYTTILGGY 286

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
             +GD+  A  +  E++ RG   D   +T L+ G+C+ G+ ++A +++ EM +  ++P+D
Sbjct: 287 VSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPND 346

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY ++I+ +CK   +     LL +M    ++P+      +++ LC+ G+++ A  L   
Sbjct: 347 VTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKK 406

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKL--QSEKGLVSDYACYTSLVS 455
           +L     PD+   + L+   CK G   +  KL  + EKG +     Y +L++
Sbjct: 407 LLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIA 458



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 29/226 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EILD G+ P    + +LM   CK+G+  DA  V DE  +  +    V++  +I  +CK K
Sbjct: 301 EILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEK 360

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              E   L   M      P       +I+ LC+E +++ A  L  ++ ++  TP++ I +
Sbjct: 361 KSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITS 420

Query: 239 TLIDGHCKNGRIDMA----------------------------GDMKEARKIVDEMCTNG 270
           TLI   CK G++  A                            G++ EA ++ D M   G
Sbjct: 421 TLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKG 480

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
             P+  TY +L+ GFCK G+    + + +EM+  G  L N A  A+
Sbjct: 481 CVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGC-LPNKATYAI 525


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 162/310 (52%), Gaps = 6/310 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F+  ++  G  P+V  +N LMH LC +  + DA  VF++    G      +++ LI+
Sbjct: 335 ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+ KA +LD    + + M   G  P+V  Y+ +++ LC+ +  + A  L+  M      P
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V F T I G C +GR+D A       K+ D+M  +G  P+  TY  LLD   K+    
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWA------IKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFG 508

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  + K+M  RGIEL+ V +  +I G+C  G + EA  +L +M+  G KPD  T  +VI
Sbjct: 509 EAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVI 568

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D +CK G      +L+  + +    P +  Y +L++G+C H  ++ A + L  ML  G+ 
Sbjct: 569 DAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGIS 628

Query: 413 PDDITYNILL 422
           P+  T+N+L+
Sbjct: 629 PNVATWNVLV 638



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 175/374 (46%), Gaps = 46/374 (12%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L   ++PSV V+N L++ +CKE   ++A  + DE   +G+    +S+ T+IN    A N+
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNV 297

Query: 181 D-------------------------EGFRLKS----------VMEGSGMRPDVYTYSAL 205
           +                         +GF LK            M   G+ P+V  Y+AL
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
           ++GLC +  L DA  + ++M   G  PN   ++ LIDG+ K      AGD+  A ++ + 
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAK------AGDLDGASEVWNW 411

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M T+G +P+ + YT ++D  C+      A  + + M       + V F   I G C  G+
Sbjct: 412 MITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGR 471

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V  A ++  +M   G  P+  TY  ++D   K+      F L+K+M   G    + TYN 
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEK 441
           ++ G C  G L  A  LL  M+  G  PD IT NI+++ +CK G      +  D+L + K
Sbjct: 532 IIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591

Query: 442 GLVSDYACYTSLVS 455
               D   YTSL+S
Sbjct: 592 -WHPDIIAYTSLIS 604



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 137/268 (51%), Gaps = 14/268 (5%)

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S M+  GM P+V+TY+ L+  LCK NR+D A  LL EM  +G  P++V +TTLI   CK 
Sbjct: 170 SNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKL 229

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G++      KEAR++          P    Y  L++G CKE   E A  +  EM+ +GI+
Sbjct: 230 GKV------KEAREL-----AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGID 278

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + +++T +I+     G V  +  +L +M   G  P+  T+T +I  F   G +      
Sbjct: 279 PNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDF 338

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M  +G +P V  YNALM+GLC    L +A  + + M   G  P+  TY+ L++G+ K
Sbjct: 339 WDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAK 398

Query: 428 HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            G   D D        +  + C+ ++V+
Sbjct: 399 AG---DLDGASEVWNWMITHGCHPNVVA 423



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 151/317 (47%), Gaps = 11/317 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  + D+   P+V ++N ++  L  E + +    ++    K G+     ++N L+ 
Sbjct: 130 ALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLK 189

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             CK   +D   +L   M   G  PD  +Y+ LI+ LCK  ++ +A  L         TP
Sbjct: 190 ALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL-----AMSFTP 244

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +  ++  LI+G CK    +      EA +++DEM   G++P+ I+YT +++     G++E
Sbjct: 245 SVPVYNALINGVCKEYTFE------EAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVE 298

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            +L +  +M  RG   +   FT+LI GF   G   EA      M++ G+ P+   Y  ++
Sbjct: 299 LSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALM 358

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              C          +  +M  +G  P V TY+AL++G  K G L  A+ + + M+  G  
Sbjct: 359 HGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH 418

Query: 413 PDDITYNILLEGHCKHG 429
           P+ + Y  +++  C++ 
Sbjct: 419 PNVVAYTCMVDVLCRNS 435



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+H + SK+ +G + S+F   +E  G         AL+  Y   G LD A + +  +  H
Sbjct: 357 LMHGLCSKRSLGDAVSVFNQ-MEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH 415

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                     C++D + R ++          +      P+   FN  +  LC  G++  A
Sbjct: 416 GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWA 475

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             VFD+ G  G      ++N L++   K +   E F L   ME  G+  ++ TY+ +I G
Sbjct: 476 IKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYG 535

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            C    L +A  LL +M  RG  P+ +    +ID +CK G++++      A +++D +  
Sbjct: 536 YCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNI------AIQLMDRLSA 589

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
              +PD I YT L+ G C    +E A+   + M+  GI  +   +  L+
Sbjct: 590 GKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 11/247 (4%)

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            KS+      +    TY  +I  L  E  +D  + LL +M   G++ ++ +F ++I    
Sbjct: 63  FKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVI---- 118

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             G    AG  ++A K    M    + P    Y  +LD    E   +    I   M K G
Sbjct: 119 --GSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDG 176

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E +   +  L+   C+  +V  A ++L EM   G  PD+ +YT +I   CK G  K   
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L          P+V  YNAL+NG+CK    + A  LLD M++ G+ P+ I+Y  ++   
Sbjct: 237 ELAMSFT-----PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINAL 291

Query: 426 CKHGNPE 432
              GN E
Sbjct: 292 SDAGNVE 298



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +TY ++++    E +++    + ++M   GI      F ++I  + R G   +A +    
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M    +KP    Y  ++D        +    +   M+ DG  P V TYN L+  LCK+ +
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNR 196

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           +  A+ LL  M   G  PD+++Y  L+   CK G  ++  +L
Sbjct: 197 VDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 192/416 (46%), Gaps = 67/416 (16%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G  + +   G   S   +NVLM+ LCK  ++++A  V +     G+ A  V++ TL+ G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 175 CKAKNLD-----------------------------------EGFRLKSVMEGSGMRPDV 199
           C+ + L+                                   E F L   +   GM P+V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------ 253
           + Y+ALI+ LCK  R DDA+ L  EM  RGL PN+V +  LI   CK G I+ A      
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 254 -----------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
                                  G +  AR ++  M   GL P   +Y+ L+ G C+ GD
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           L S +++ +EM +RGI  +N  FTALI+GFC+  K+ EA R+  +M+   + P++ T+ +
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ +C  G+ +  F+L  +M   G  P   TY +L++GLC    +  AN  +  + +  
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQK 463
            V ++ +   LL G  + G   +   L  E   +G+  D   +T +V  + K   K
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDK 634



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 185/410 (45%), Gaps = 76/410 (18%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID++ +          + E+   G  P+   + +L+H LCK G I+DA  +FD+   +G
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +  T   +N+LING+CK  +LD    L S M   G+ P   +YS LI GLC+   L    
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCM 463

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM ERG+  N+  FT LI+G CK+ ++D      EA ++ D+M  + + P+++T+ 
Sbjct: 464 ELHREMAERGIAWNNYTFTALINGFCKDKKMD------EAARLFDKMIDSNVIPNEVTFN 517

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC------------------ 321
           ++++G+C  G++  A  +  +M++ G++ DN  + +LISG C                  
Sbjct: 518 VMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENS 577

Query: 322 -----------------RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                            R G+  E   +  EM   G+K D  ++T+++    K  D +  
Sbjct: 578 YAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKS 637

Query: 365 FRLLKEMRS-----------------------------------DGHLPAVETYNALMNG 389
             L +EM+                                    DG+ P   T+  L+N 
Sbjct: 638 CVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINN 697

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           LCK G L +A +L   ML   V+P+  TYN  L+     G+ E    L S
Sbjct: 698 LCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHS 747



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 184/373 (49%), Gaps = 12/373 (3%)

Query: 92  IPARG-CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
           +P+   C  +ID + +  L         ++ D G  P+V+ +N L+ KLCK  +  DA  
Sbjct: 300 VPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADR 359

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +F E   RGL    V++  LI+  CK   +++   L   M   G++  VY Y++LING C
Sbjct: 360 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           K+  LD A  LL  M + GLTP    ++ LI G C+N      GD+    ++  EM   G
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN------GDLSSCMELHREMAERG 473

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +  +  T+T L++GFCK+  ++ A  +  +MI   +  + V F  +I G+C  G + +A 
Sbjct: 474 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 533

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
           ++  +M+++GLKPD+ TY  +I   C           + ++ +   +    +  AL+ G 
Sbjct: 534 QLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGF 593

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
            + G+      L D M   GV  D +++ I++    K  + E     F +++ E+G+  D
Sbjct: 594 FREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMK-EQGVKPD 652

Query: 447 YACYTSLVSKSSK 459
              YT ++   SK
Sbjct: 653 DIFYTCMIDALSK 665



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 172/338 (50%), Gaps = 9/338 (2%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G + + Y  + ++  L K  +   A+ +FD+  + G+H     +   I  +C+++NL
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D    L   ME  G++     Y+ L+ GLCK  R+ +A  + + M   G+T ++V + TL
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           + G C+   ++MA       +I  +M   G  P +   + ++D   K+  +E A  +  +
Sbjct: 275 VYGFCRMEELEMA------LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 328

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +   G+  +  A+ ALI   C+  +  +A+R+ +EM   GL+P++ TY ++I   CK G 
Sbjct: 329 LGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGM 388

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            +    L  +MR  G    V  YN+L+NG CK G L  A  LL  M+  G+ P   +Y+ 
Sbjct: 389 IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 448

Query: 421 LLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
           L+ G C++G+     +  +  +E+G+  +   +T+L++
Sbjct: 449 LIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALIN 486



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 178/389 (45%), Gaps = 10/389 (2%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K M  +A LF  ++++    +P  V   +MI  Y  +G +  A Q +  + +   +    
Sbjct: 492 KKMDEAARLFDKMIDS--NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNY 549

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
             R LI  +  T+  +    F  ++ +     + +    L++   +EG+  +   ++DE 
Sbjct: 550 TYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEM 609

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             RG+    VSF  ++    K  + ++   L   M+  G++PD   Y+ +I+ L KE  +
Sbjct: 610 AVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENM 669

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
             A     +M   G +PN V  T LI+  CK+G +        A  +  EM    + P+K
Sbjct: 670 IQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLG------SAELLCKEMLAGNVLPNK 723

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY   LD F  EGD+E A D+   M++ G     V+F  LI G C+ GK+ EA  ++ +
Sbjct: 724 FTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSK 782

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           + + G  PD  +Y+ +I   CK GD    F L  EM   G  P V  YN  +     HG+
Sbjct: 783 ITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGE 842

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEG 424
              A  +   M+  GV P+  TY  LL G
Sbjct: 843 SDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/503 (24%), Positives = 208/503 (41%), Gaps = 81/503 (16%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+H +  K+GM   A      +  +G  +     ++L+  Y   G LD A      + K 
Sbjct: 379 LIHALC-KRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 437

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                A     LI  + R    +  +  + E+ + G + + Y F  L++  CK+ K+ +A
Sbjct: 438 GLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 497

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +FD+     +    V+FN +I G+C   N+ + F+L   M   G++PD YTY +LI+G
Sbjct: 498 ARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISG 557

Query: 209 LC-----------------------------------KENRLDDAELLLHEMCERGLTPN 233
           LC                                   +E R  +   L  EM  RG+  +
Sbjct: 558 LCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLD 617

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V FT ++    K        D +++  +  EM   G+ PD I YT ++D   KE ++  
Sbjct: 618 LVSFTIIVYAALKQH------DKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQ 671

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL+   +M+  G   + V  T LI+  C+ G +  AE + +EML   + P+  TY   +D
Sbjct: 672 ALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLD 731

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-------------- 399
            F   GD +    L   M   GHL ++ ++N L+ GLCK G+++ A              
Sbjct: 732 YFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSP 790

Query: 400 ---------------------NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
                                  L + ML  G+ PD + YNI +     HG  +    + 
Sbjct: 791 DCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIY 850

Query: 439 S---EKGLVSDYACYTSLVSKSS 458
           +     G+  ++  Y +L+S  S
Sbjct: 851 TNMIRSGVQPNWDTYRALLSGIS 873


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 182/348 (52%), Gaps = 11/348 (3%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           V+ GF L  ++   G SP+V+++ +L+   C+ G I  A+++F      GL A    +  
Sbjct: 123 VSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTI 182

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +ING  K     +GF L   M+  G+ P++YTY++LI   C++ +L  A  +  E+ +RG
Sbjct: 183 MINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRG 242

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           +  N V +  LI G C+ G++       +A  +++ M    +NP   T+ +L+DG C  G
Sbjct: 243 VACNAVTYNILIGGLCRKGQVS------KAEGLLERMKRAHINPTTRTFNMLMDGLCNTG 296

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            L+ AL   +++   G+    V +  LISGF + G       ++REM   G+ P   TYT
Sbjct: 297 QLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYT 356

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++++ F ++ D +  + +   M+  G +P   TY  L++GLC  G +  A+ L  +M+++
Sbjct: 357 ILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEM 416

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            + P+D+ YN ++ G+CK  N     K   E    G+  + A Y S +
Sbjct: 417 HLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTI 464



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++Y +N L+ + C++GK+  A  VFDE  KRG+   AV++N LI G C+   + + 
Sbjct: 207 GVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKA 266

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+ + + P   T++ L++GLC   +LD A   L ++   GL P  V +  LI G
Sbjct: 267 EGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISG 326

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K       G+     ++V EM   G++P K+TYTIL++ F +  D+E A ++   M +
Sbjct: 327 FSK------VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKR 380

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D   +  LI G C  G +VEA ++ + M+++ L+P+D  Y  +I+ +CK  ++  
Sbjct: 381 IGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYK 440

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
             + L+EM  +G  P V +Y + +  LCK G+   A  LL  M + G+ P +
Sbjct: 441 ALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPE 492



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 176/359 (49%), Gaps = 12/359 (3%)

Query: 100 LIDRMMRTNLPTVTL-GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           +I+  +++ L   +L GF L +L  G+SPS + FN  +  L K G +      F E+  R
Sbjct: 44  VINASLQSQLLEQSLDGFKLMVLK-GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR 102

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                  SF   I   C+  N+ +GF L + ME  G+ P+V+ Y+ LI   C+   +D A
Sbjct: 103 -TQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQA 161

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
           +++   M + GL  N  I+T +I+G  K G      ++ +  K+V      G+ P+  TY
Sbjct: 162 KVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLV------GVLPNLYTY 215

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             L+  +C++G L  A  +  E+ KRG+  + V +  LI G CR G+V +AE +L  M +
Sbjct: 216 NSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKR 275

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
             + P   T+ M++D  C  G        L++++  G  P + TYN L++G  K G    
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSV 335

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
            + L+  M D G+ P  +TY IL+    +  + E   +   L    GLV D   Y  L+
Sbjct: 336 VSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLI 394



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 7/291 (2%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP L   ++L+  Y   G L  A + F  + K      A     LI  + R    +   G
Sbjct: 209 LPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEG 268

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
               +     +P+   FN+LM  LC  G++  A    ++    GL  T V++N LI+G  
Sbjct: 269 LLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFS 328

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  N      L   ME  G+ P   TY+ L+N   + + ++ A  + H M   GL P+  
Sbjct: 329 KVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQH 388

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  LI G C      + G+M EA K+   M    L P+ + Y  +++G+CKE +   AL
Sbjct: 389 TYGVLIHGLC------IKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKAL 442

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
              +EM+K G+  +  ++ + I   C+ GK +EA+R+L+EM + GLKP ++
Sbjct: 443 KFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPES 493



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 21/313 (6%)

Query: 157 KRGLHATAV---SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           +R L++ +V     + +IN   +++ L++      +M   G  P  ++++  ++ L K  
Sbjct: 28  QRNLNSESVCGRPRDAVINASLQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSG 87

Query: 214 RLDDAELLLHEMCERGLTPNDVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            LD       E   R  T  DV  F   I   C+NG +       +  +++ +M T G++
Sbjct: 88  NLDRTWGFFTEYLGR--TQFDVYSFWITIKAFCENGNVS------KGFELLAQMETMGVS 139

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+   YTIL++  C+ GD++ A  +   M   G+  +   +T +I+GF + G   +   +
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            ++M  VG+ P+  TY  +I  +C++G     F++  E+   G      TYN L+ GLC+
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS--EK----GLVSD 446
            GQ+  A  LL+ M    + P   T+N+L++G C  G     DK  S  EK    GL   
Sbjct: 260 KGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTG---QLDKALSYLEKLKLIGLCPT 316

Query: 447 YACYTSLVSKSSK 459
              Y  L+S  SK
Sbjct: 317 LVTYNILISGFSK 329


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 180/370 (48%), Gaps = 41/370 (11%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           CL+     +  P   +G + ++   G  P V  +N LM  LCK G+  +A+ VFD   K+
Sbjct: 246 CLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKK 305

Query: 159 G-----------LHATAVS------------------------FNTLINGHCKAKNLDEG 183
           G           LH  A                          FN LI  + K   +DE 
Sbjct: 306 GHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEA 365

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
               S M   G+ P++ TY  +++ LC+  ++DDA      +   GLTPN V+F TLI G
Sbjct: 366 MLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHG 425

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C   + D      +A ++  EM   G+ P+ I +  LL+  CKEG +  A +I   M++
Sbjct: 426 LCACDKWD------KAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVR 479

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             ++ D + +T LI G+C  GKV EA ++L  M+  G+KP++ TY  +I+ +CKNG  + 
Sbjct: 480 VDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIED 539

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L ++M S G  P +  Y+ +++GL +  ++  A  L   M+  G+     TYNI+L+
Sbjct: 540 ACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQ 599

Query: 424 GHCKHGNPED 433
           G C++   +D
Sbjct: 600 GLCQNNCTDD 609



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 208/422 (49%), Gaps = 27/422 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+T++ +L  +    +AR +   +V KKG    +S++ ++L    T    + +  L+ V 
Sbjct: 279 YNTLMVYLCKNGRSMEARKVFDSMV-KKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVM 337

Query: 70  VDLGFLDDAIQCFRLLRKHY-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           V  G   D          HY F I       LI    +  +    +  + ++   G  P+
Sbjct: 338 VRNGTQPD----------HYIFNI-------LIGAYAKHGMVDEAMLAFSKMRQQGLHPN 380

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +  +M  LC+ GK+ DA   FD     GL    V F TLI+G C     D+   L  
Sbjct: 381 IVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAV 440

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M G G+ P+   ++ L+N LCKE  +  A+ +   M    +  + + +TTLIDG+C +G
Sbjct: 441 EMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDG 500

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++D      EA K+++ M  +G+ P+++TY  +++G+CK G +E A  + ++M  +G+  
Sbjct: 501 KVD------EATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNP 554

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V ++ ++ G  +  ++  A+ +   M+K G+K    TY +++   C+N  T    R+ 
Sbjct: 555 GIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMF 614

Query: 369 KEM-RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             +   D HL    T+N +++ L K G+   A  L  ++L  G+VP+ +TY ++++   +
Sbjct: 615 HNLCLIDFHLQN-RTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIE 673

Query: 428 HG 429
            G
Sbjct: 674 QG 675



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 171/341 (50%), Gaps = 41/341 (12%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-A 177
           E+LD G SP+   +N L+H  C  GK K+A  +F +  + G+    V++NTL+   CK  
Sbjct: 231 EMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNG 290

Query: 178 KNLD-----------------------------EGF-----RLKSVMEGSGMRPDVYTYS 203
           ++++                             EG+     +L  VM  +G +PD Y ++
Sbjct: 291 RSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFN 350

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI    K   +D+A L   +M ++GL PN V + T++D  C+ G++D      +A    
Sbjct: 351 ILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVD------DAMSQF 404

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D + + GL P+ + +  L+ G C     + A ++  EMI RGI  + + F  L++  C+ 
Sbjct: 405 DRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKE 464

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G V  A+ +   M++V ++ D  TYT +ID +C +G      +LL+ M  DG  P   TY
Sbjct: 465 GMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTY 524

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           N ++NG CK+G++++A  L   M   GV P  + Y+ +L G
Sbjct: 525 NTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHG 565



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 160/327 (48%), Gaps = 11/327 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            ++  G++     F+ L+  LC + +  DA  +        G    A S+N L+ G C  
Sbjct: 121 RVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDE 180

Query: 178 KNLDEGFRLKSVMEGSGMR----PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
               +   L   M     R    PDV +Y+ +INGL +E +LD A  L  EM ++G++PN
Sbjct: 181 NRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPN 240

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + +  L+ G+C +G+       KEA  I  +MC +G+ PD +TY  L+   CK G    
Sbjct: 241 CITYNCLLHGYCSSGK------PKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSME 294

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +   M+K+G + D+  +  L+ G+   G +V+  ++L  M++ G +PD   + ++I 
Sbjct: 295 ARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIG 354

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            + K+G          +MR  G  P + TY  +M+ LC+ G++ +A    D ++  G+ P
Sbjct: 355 AYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTP 414

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE 440
           + + +  L+ G C     +  ++L  E
Sbjct: 415 NGVVFRTLIHGLCACDKWDKAEELAVE 441



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 159/339 (46%), Gaps = 15/339 (4%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDA-----QMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           G +P+ + +N+L+  LC E + + A      M+ D+  + G     VS+ T+ING  +  
Sbjct: 162 GCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADD-TRGGCPPDVVSYTTVINGLLREG 220

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LD+ + L   M   GM P+  TY+ L++G C   +  +A  +  +MC  G+ P+ V + 
Sbjct: 221 QLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYN 280

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+   CKNGR        EARK+ D M   G  PD   Y  LL G+  EG L     + 
Sbjct: 281 TLMVYLCKNGR------SMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLL 334

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M++ G + D+  F  LI  + + G V EA     +M + GL P+  TY  V+D  C+ 
Sbjct: 335 DVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRV 394

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G           + S+G  P    +  L++GLC   +   A  L   M+  G+ P+ I +
Sbjct: 395 GKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFF 454

Query: 419 NILLEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           N LL   CK G     ++   L     +  D   YT+L+
Sbjct: 455 NTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLI 493



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 167/333 (50%), Gaps = 16/333 (4%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK-SV 189
            +++++    + G +  A        + G  A A++F+ L+ G C  K   +   +    
Sbjct: 98  TYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRR 157

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE---RGLTPNDVI-FTTLIDGHC 245
           M   G  P+ ++Y+ L+ GLC ENR   A  LLH M     RG  P DV+ +TT+I+G  
Sbjct: 158 MPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLL 217

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G++D      +A  + DEM   G++P+ ITY  LL G+C  G  + A+ I ++M + G
Sbjct: 218 REGQLD------KAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDG 271

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E D V +  L+   C+ G+ +EA ++   M+K G KPD + Y  ++  +   G      
Sbjct: 272 VEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMH 331

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +LL  M  +G  P    +N L+    KHG +  A +    M   G+ P+ +TY  +++  
Sbjct: 332 QLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDAL 391

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           C+ G  +D    FD+L SE GL  +   + +L+
Sbjct: 392 CRVGKVDDAMSQFDRLISE-GLTPNGVVFRTLI 423



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 186/411 (45%), Gaps = 17/411 (4%)

Query: 7   LHAYSTMVHFLVAHKM-------HSQARDLLHLIV----SKKGMGSSASLFASILETRGT 55
           LH Y+T  + +  H++        +Q    +  I+    +K GM   A L  S +  +G 
Sbjct: 318 LHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGL 377

Query: 56  HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           H   +    +M     +G +DDA+  F  L            R LI  +   +       
Sbjct: 378 HPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEE 437

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
             +E++  G  P+   FN L++ LCKEG +  A+ +FD   +  +    +++ TLI+G+C
Sbjct: 438 LAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYC 497

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +DE  +L   M   G++P+  TY+ +ING CK  R++DA  L  +M  +G+ P  V
Sbjct: 498 LDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIV 557

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           I++T++ G  +  RI        A+++   M   G+     TY I+L G C+    + AL
Sbjct: 558 IYSTILHGLFQTRRI------AAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDAL 611

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   +      L N  F  +I    +GG+  EA+ +   +L  GL P+  TY +++   
Sbjct: 612 RMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSL 671

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            + G  +    L   +  +G        NAL+  L + G+++ A + L  +
Sbjct: 672 IEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKI 722



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA-N 400
           + D  TY++VI C  + G     F  L  +   G      T++ L+ GLC   +  +A +
Sbjct: 93  RADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMD 152

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-------QSEKGLVSDYACYTSL 453
           + L  M  LG  P+  +YNILL+G C     +    L        +  G   D   YT++
Sbjct: 153 IALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTV 212

Query: 454 VS 455
           ++
Sbjct: 213 IN 214


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 178/334 (53%), Gaps = 12/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ + +L++ LC+  K K A+ VF E  + G     +++ TLI    +A  +DE  R+
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                   +  DV T + ++ GLCK +RLDDA   + EM + G+ PN+V ++ L+ G  +
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQ 240

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G +D     +  R   +E    G + +   Y   LD  CK G L+ A    +E+ + G+
Sbjct: 241 HGELD-----RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGV 295

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V ++ LI+ F R G+   +  +L +M + G+KPD  TY+ +I+  CK    +  FR
Sbjct: 296 VPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFR 355

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL+ M + G  P V TYN++M+GLCK G++   + + + ML     PD +TY+I++ G  
Sbjct: 356 LLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLS 415

Query: 427 KHGNPEDFDKL-----QSEKGLVSDYACYTSLVS 455
           K G  +   KL      S +G   D A Y+ +++
Sbjct: 416 KAGMLDSAVKLFELIKSSREG--PDAAAYSMVIT 447



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 180/351 (51%), Gaps = 19/351 (5%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G       F +L  KL +  K  +   +F     RG+     ++  +++G C A  
Sbjct: 10  VVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGM 69

Query: 180 LDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++   L  V E SG+  P ++ Y+ +I GLC+ +R+ DA  +L +M E  + PN   +T
Sbjct: 70  ANQALEL--VRELSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYT 127

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C++ +  +      AR++  EM  NG  P+ ITY  L+    + G+++ AL + 
Sbjct: 128 ILLNGLCRSNKTKL------AREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181

Query: 299 KEMIKRGIEL--DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
            E  +R +EL  D +  T ++ G C+  ++ +A + + EM ++G++P++ TY+ ++  F 
Sbjct: 182 IE--QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFR 239

Query: 357 KNGDTKTGFRLLKE--MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           ++G+     R  +E   R  G L A   Y   ++ LCK G L  A   ++ +   GVVPD
Sbjct: 240 QHGELDRVIRFFEEEKARKGGSLEAA-AYPGYLDALCKAGYLDRARKSVEELRQSGVVPD 298

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
            +TY++L+    + G  +   +L  +    G+  D   Y++L++   K R+
Sbjct: 299 VVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERK 349



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 159/334 (47%), Gaps = 14/334 (4%)

Query: 49  ILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
           ++E R   LP  V+    IV        LDDA++    +R+   R        L+    +
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQ 240

Query: 107 -TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
              L  V   F  E    G S     +   +  LCK G +  A+   +E  + G+    V
Sbjct: 241 HGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVV 300

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +++ LIN   +A   D    L   M  +G++PDV TYS LIN LCKE +  DA  LL  M
Sbjct: 301 TYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELM 360

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G  PN V + +++DG CK+G++D      E  ++ + M  +  +PD +TY+I+++G 
Sbjct: 361 EAAGSPPNVVTYNSVMDGLCKSGKMD------EVHRVYEMMLKSRCSPDVVTYSIIMNGL 414

Query: 286 CKEGDLESALDIRKEMIKRGIE-LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            K G L+SA+ +  E+IK   E  D  A++ +I+  CR GK+ EA  M   M +V +  D
Sbjct: 415 SKAGMLDSAVKLF-ELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGM-EVTVAGD 472

Query: 345 DATYTM--VIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +    +  ++   C    T +  R+++     GH
Sbjct: 473 NICRALAGLVAALCDAERTDSARRIVEVASERGH 506



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 16/247 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YS +VH    H    +         ++KG    A+ +           PG  LDAL    
Sbjct: 231 YSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAY-----------PGY-LDAL---- 274

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
              G+LD A +    LR+            LI+   R      +L    ++   G  P V
Sbjct: 275 CKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDV 334

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             ++ L++ LCKE K +DA  + +     G     V++N++++G CK+  +DE  R+  +
Sbjct: 335 VTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEM 394

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  S   PDV TYS ++NGL K   LD A  L   +      P+   ++ +I   C+ G+
Sbjct: 395 MLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGK 454

Query: 250 IDMAGDM 256
           ++ A  M
Sbjct: 455 LEEACGM 461



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + + +++ G+++D+ AFT L +   R  K  E  R+   +   G+   + TY +V+D  C
Sbjct: 6   LERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLC 65

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             G       L++E+ S  + P +  YN ++ GLC+  ++ +A  +L+ M++  +VP+  
Sbjct: 66  GAGMANQALELVREL-SGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVF 124

Query: 417 TYNILLEGHCK 427
           TY ILL G C+
Sbjct: 125 TYTILLNGLCR 135



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 11/144 (7%)

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ + R +++ G+K D   +T++     +        RL   + S G +    TY  +++
Sbjct: 3   AKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVD 62

Query: 389 GLCKHGQLKNANMLLDTMLDLGVV--PDDITYNILLEGHCKHGNPEDFDKL---QSEKGL 443
           GLC  G    AN  L+ + +L  V  P    YN ++ G C+     D  K+     E+ +
Sbjct: 63  GLCGAGM---ANQALELVRELSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESI 119

Query: 444 VSDYACYTSLVS---KSSKYRQKR 464
           V +   YT L++   +S+K +  R
Sbjct: 120 VPNVFTYTILLNGLCRSNKTKLAR 143


>gi|222612695|gb|EEE50827.1| hypothetical protein OsJ_31237 [Oryza sativa Japonica Group]
          Length = 550

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 188/402 (46%), Gaps = 23/402 (5%)

Query: 17  LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR--GTHLPGLVLDALMIVYVDLGF 74
           LV    H    DLLH ++          L A +   R  G  +P L  D L  V      
Sbjct: 151 LVPSIPHHAFPDLLHHVL----------LTARLTAARPDGGAVPAL--DVLFSVCARGKK 198

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L  A   FR +R H        C   I   +    P + L F+ E+     SP++Y  N+
Sbjct: 199 LSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFFREMRRCRISPNIYTANM 258

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG--FRLKSVMEG 192
           ++   C  G+  DA  V D+  + G+  T VSFNTLI  +C+   +D G   +LK  ME 
Sbjct: 259 VLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCR-DGVDAGPALQLKMKMEQ 317

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
            G+ PDV TY  +I+GLCKE R+  A  +L EM  +G+ PN V + TLI G+   G   M
Sbjct: 318 EGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVALGDNAM 377

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           AG      ++ +EM  N +  D +TY  L+ G C EG ++    + +E+ +  +E +   
Sbjct: 378 AG------RVHEEMVKNRVELDIVTYNALILGLCNEGKMKKVEHLLRELDRAKLEPNAST 431

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F+ALI G+C+      A ++L  M K G  P+  TY MVI  FCKN D +    ++ +M 
Sbjct: 432 FSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCKNKDLEGAVDVMGDML 491

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
                P     N   +GL K  +L  A  L      L  +PD
Sbjct: 492 GRCIAPDKALLNEFFDGLWKAKKLHLAENLRSLNNGLKFIPD 533



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 146/335 (43%), Gaps = 40/335 (11%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V   +VL     +  K+  A + F      GL    VS N  I+     +  +      
Sbjct: 182 AVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFF 241

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M    + P++YT + ++   C   R  DA  +L +M E G+    V F TLI  +C++
Sbjct: 242 REMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCRD 301

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE------------------- 288
           G      D   A ++  +M   GL PD +TY  ++ G CKE                   
Sbjct: 302 GV-----DAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVM 356

Query: 289 ----------------GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
                           GD   A  + +EM+K  +ELD V + ALI G C  GK+ + E +
Sbjct: 357 PNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLCNEGKMKKVEHL 416

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           LRE+ +  L+P+ +T++ +I  +CK  +++   +LL  M+  G  P   TY  +++  CK
Sbjct: 417 LRELDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCK 476

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           +  L+ A  ++  ML   + PD    N   +G  K
Sbjct: 477 NKDLEGAVDVMGDMLGRCIAPDKALLNEFFDGLWK 511



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 14/254 (5%)

Query: 193 SGMRPD---VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +  RPD   V     L +   +  +L  A L    M   GL P  V     I       R
Sbjct: 174 TAARPDGGAVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRR 233

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
            ++A           EM    ++P+  T  ++L  FC  G    A ++  +M + G+   
Sbjct: 234 PEIA------LSFFREMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRT 287

Query: 310 NVAFTALISGFCRGGKVVEAERMLR---EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            V+F  LI+ +CR G  V+A   L+   +M + GL PD  TY  +I   CK G      +
Sbjct: 288 TVSFNTLIAAYCRDG--VDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQ 345

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L EMR  G +P   TYN L++G    G    A  + + M+   V  D +TYN L+ G C
Sbjct: 346 VLSEMRVKGVMPNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLC 405

Query: 427 KHGNPEDFDKLQSE 440
             G  +  + L  E
Sbjct: 406 NEGKMKKVEHLLRE 419


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 183/343 (53%), Gaps = 10/343 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D +++  L        L++   G SP+ + +N+L+   C+ G +K+A  V +   +  
Sbjct: 254 ILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNN 313

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  T  ++N L+NG C    +DE FR++  ME   + PDV TY+ LI+G C + R D +E
Sbjct: 314 LLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDG-CSQWR-DSSE 371

Query: 220 L--LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           +  L+ EM ++G+  N V +  ++   CK G      +M EA   +D+M  NGL+PD +T
Sbjct: 372 VYSLIEEMDKKGVKCNAVTYNIILKWMCKKG------NMTEATTTLDKMEENGLSPDCVT 425

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L+  +CK G +  A  +  EM  +G+++D      ++   C   K+ EA  +L    
Sbjct: 426 YNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSAS 485

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           K G   D+ +Y ++I  + K+        L  EM+    +P+  TYN+++ GLC+  ++ 
Sbjct: 486 KRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVD 545

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            A   L+ ML+ G+VPD+ TYNI++ G C  GN E   +  +E
Sbjct: 546 QAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNE 588



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 227/485 (46%), Gaps = 96/485 (19%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y+T++  L+  ++  +ARDLL L +  KG+  +   +                + L+  
Sbjct: 250 SYNTILDALLKRRLLQEARDLL-LDMKSKGLSPNKHTY----------------NMLVCG 292

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y  LG L +A +                   +I+ M R NL                 P+
Sbjct: 293 YCRLGLLKEATK-------------------VIEIMTRNNL----------------LPT 317

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ +N+L++  C +GKI +A  + DE  K  +    V++NTLI+G  + ++  E + L  
Sbjct: 318 VWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIE 377

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M+  G++ +  TY+ ++  +CK+  + +A   L +M E GL+P+ V + TLI  +CK  
Sbjct: 378 EMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCK-- 435

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPD---------------------------------- 274
               AG M +A +++DEM + GL  D                                  
Sbjct: 436 ----AGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYIL 491

Query: 275 -KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
            +++Y IL+ G+ K+   + AL++  EM +R I    + + ++I G C+  KV +A   L
Sbjct: 492 DEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKL 551

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
            EML+ GL PD+ TY ++I  FC  G+ +  F+   EM  +   P V T N L+ GLC+ 
Sbjct: 552 NEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCRE 611

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACY 450
           G L+ A  L +T++  G   D +TYN ++   CK G  E+   L +E   K L  D   Y
Sbjct: 612 GMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTY 671

Query: 451 TSLVS 455
             +++
Sbjct: 672 KVIIA 676



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 196/412 (47%), Gaps = 12/412 (2%)

Query: 20  HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-VLDALMIVYVDLGFLDDA 78
           H M S A+ LL   +S         L   +  TR    P   +LD  +  YV +     A
Sbjct: 102 HYMFSDAKSLLISFISSDRQHELHKLI--LHPTRDLPEPSKELLDTSIGAYVQMDQPHLA 159

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTL---GFYLEILDYGYSPSVYVFNVL 135
            Q F  +++  +R     C  L++ ++R    +  L       + +  G  P+   FN+L
Sbjct: 160 TQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNIL 219

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++  C E K+KDA    ++  + G     VS+NT+++   K + L E   L   M+  G+
Sbjct: 220 IYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGL 279

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            P+ +TY+ L+ G C+   L +A  ++  M    L P    +  L++G C +G+ID    
Sbjct: 280 SPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKID---- 335

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
             EA +I DEM    + PD +TY  L+DG  +  D      + +EM K+G++ + V +  
Sbjct: 336 --EAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNI 393

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           ++   C+ G + EA   L +M + GL PD  TY  +I  +CK G     FR++ EM S G
Sbjct: 394 ILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKG 453

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
                 T N +++ LC   +L  A  LL +    G + D+++Y IL+ G+ K
Sbjct: 454 LKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFK 505



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G     +  N ++H LC E K+ +A  +     KRG     VS+  LI G+ K +
Sbjct: 448 EMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDE 507

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D    L   M+   + P   TY+++I GLC+  ++D A   L+EM E GL P++  + 
Sbjct: 508 KGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYN 567

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +I G C      + G++++A +  +EM  N   PD  T  ILL G C+EG LE AL + 
Sbjct: 568 IIIHGFC------LEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLF 621

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             ++ +G ++D V +  +IS  C+ GK   A  +L EM    L PD  TY ++I      
Sbjct: 622 NTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDA 681

Query: 359 GDTKTGFRLLKEMRSDG--HLPAVE---------------------TYNALMNGLCKHGQ 395
           G  K       +M   G  H   ++                      Y+  +N LC   +
Sbjct: 682 GRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHK 741

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            K+A  L   +   GV  +  TY  L+EG  K
Sbjct: 742 YKDAMHLFVEVTKEGVALNKYTYLNLMEGLIK 773



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 134/266 (50%), Gaps = 14/266 (5%)

Query: 196 RPDVYTYSALINGLCK---ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           RP++ T + L+N L +    + +  A  +L +  + G+ PN   F  LI G+C   ++  
Sbjct: 172 RPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKV-- 229

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
               K+A   V++M   G  PD ++Y  +LD   K   L+ A D+  +M  +G+  +   
Sbjct: 230 ----KDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHT 285

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  L+ G+CR G + EA +++  M +  L P   TY M+++ FC +G     FR+  EM 
Sbjct: 286 YNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME 345

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
               LP V TYN L++G  +         L++ M   GV  + +TYNI+L+  CK GN  
Sbjct: 346 KMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMT 405

Query: 433 D----FDKLQSEKGLVSDYACYTSLV 454
           +     DK++ E GL  D   Y +L+
Sbjct: 406 EATTTLDKME-ENGLSPDCVTYNTLI 430



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 18/210 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+ E+++  + P VY  N+L+  LC+EG ++ A  +F+    +G     V++NT+I+  C
Sbjct: 585 FHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLC 644

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K    +  + L + ME   + PD YTY  +I  L    R+ +AE    +M E G+     
Sbjct: 645 KEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVH--- 701

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
                 D + K G+          + ++    +   +   I Y+  ++  C +   + A+
Sbjct: 702 ------DQNLKLGK---------GQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAM 746

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGK 325
            +  E+ K G+ L+   +  L+ G  +  K
Sbjct: 747 HLFVEVTKEGVALNKYTYLNLMEGLIKRRK 776


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 166/316 (52%), Gaps = 11/316 (3%)

Query: 112 VTLGF--YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           +TL F  +  IL  G+ P     N L+  LC  G+IK      D+   +G     VS+ T
Sbjct: 109 ITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGT 168

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           LING CKA       RL   +EG  ++PDV  Y+ +IN LCK   L DA  +  EM  +G
Sbjct: 169 LINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 228

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           ++P+ V +TTLI G C      + G MKEA  +++EM    +NPD  T+++L+D   KEG
Sbjct: 229 ISPDVVTYTTLIHGFC------IMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEG 282

Query: 290 D---LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
               ++ A+ + +EM  + +  D V + +LI G C+   +  A  +L+EM + G++PD  
Sbjct: 283 KKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVY 342

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           +YT+++D  CK G  +      + +   G    V  YN ++NGLCK G    A  L   M
Sbjct: 343 SYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKM 402

Query: 407 LDLGVVPDDITYNILL 422
              G +P+ IT+  ++
Sbjct: 403 EGKGCMPNAITFRTII 418



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 9/310 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P  ++FN ++  L K  +      +F +F   G+     + + LIN  C   ++   F 
Sbjct: 55  PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS 114

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + + +   G  PD  T + LI GLC    +        ++  +G   + V + TLI+G C
Sbjct: 115 VFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLC 174

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K      AG+ K   +++ ++  + + PD + Y  +++  CK   L  A D+  EMI +G
Sbjct: 175 K------AGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 228

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT-- 363
           I  D V +T LI GFC  GK+ EA  +L EM    + PD  T++++ID   K G  K   
Sbjct: 229 ISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVD 288

Query: 364 -GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L +EM+    +P + TYN+L++GLCK+  L+ A  LL  M + G+ PD  +Y ILL
Sbjct: 289 EAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILL 348

Query: 423 EGHCKHGNPE 432
           +G CK G  E
Sbjct: 349 DGLCKGGRLE 358



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 124/264 (46%), Gaps = 12/264 (4%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P  + ++ +++ L K  R      L  +    G+TP+    + LI+  C    I +A   
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS- 114

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                +   +   G +PD IT   L+ G C  G+++  L    +++ +G +LD V++  L
Sbjct: 115 -----VFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTL 169

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G C+ G+     R+LR++    +KPD   Y  +I+  CKN        +  EM   G 
Sbjct: 170 INGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGI 229

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P V TY  L++G C  G++K A  LL+ M    + PD  T+++L++   K G  +  D+
Sbjct: 230 SPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDE 289

Query: 437 LQS------EKGLVSDYACYTSLV 454
             S       K ++ D   Y SL+
Sbjct: 290 AMSLFEEMKHKNMIPDIVTYNSLI 313



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133
           +D+A+  F  + KH   IP       LID + + +     +    E+ ++G  P VY + 
Sbjct: 287 VDEAMSLFEEM-KHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYT 345

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +L+  LCK G+++ A+  F     +G H     +N +ING CKA    E   LKS MEG 
Sbjct: 346 ILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGK 405

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           G  P+  T+  +I  L +++  D AE +L EM  RGL
Sbjct: 406 GCMPNAITFRTIICALSEKDENDKAEKILREMIARGL 442



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML +   P    +  ++    KN    T   L K+   +G  P + T + L+N  C    
Sbjct: 49  MLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAH 108

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTS 452
           +  A  +   +L  G  PD IT N L++G C  G  +    F      +G   D   Y +
Sbjct: 109 ITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGT 168

Query: 453 LVS 455
           L++
Sbjct: 169 LIN 171


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 187/369 (50%), Gaps = 12/369 (3%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEI-LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           CL+  + R  L     G ++++   +G     Y + +L+  LC  G+I DA  VF +  +
Sbjct: 130 CLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSR 189

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
                   ++  L++G CK + + E   L   M   G+ P+V TY+ALI GLC+E R DD
Sbjct: 190 GWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDD 249

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
              LL +M  +  +P+   +T ++ G CK+G++          K++ E    G+  + +T
Sbjct: 250 VTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVG------HGAKVLHEAIGKGVALEVLT 303

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y  L++G+CK GD+++ALD+ + M +  +      F  +I GFC GGKV +A   L +M 
Sbjct: 304 YNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMA 363

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
             GL P+  T+  +I   C  G+ K   RLL  M   G LP  +TY   ++ LC  GQL+
Sbjct: 364 GAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLE 423

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSL 453
            A+ L   +   G+   ++ Y  L+ G+C+ G+ +      +K+ SE   + D   Y +L
Sbjct: 424 EAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASEN-CMPDVHTYNTL 482

Query: 454 VSKSSKYRQ 462
           +    K ++
Sbjct: 483 IDGLCKVKR 491



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 173/367 (47%), Gaps = 44/367 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V+ + VL+  LCK  ++ +A+ +  E   +G+    V++N LI G C+    D+  +L
Sbjct: 194 PGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKL 253

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              ME     PD +TY+ +++GLCK  ++     +LHE   +G+    + +  LI+G+CK
Sbjct: 254 LEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCK 313

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GDMK A  ++  M  N +NP   T+  ++ GFC  G +  A+    +M   G+
Sbjct: 314 ------GGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGL 367

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC------------ 354
             + V F +LISG C  G+   A R+L  M + G+ PD  TY + ID             
Sbjct: 368 SPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHS 427

Query: 355 -----------------------FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
                                  +C+ GD  + F L+++M S+  +P V TYN L++GLC
Sbjct: 428 LFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLC 487

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC---KHGNPEDFDKLQSEKGLVSDYA 448
           K  +L  A  LLD M   G+ P   T+NIL++      KH +     +     G   D  
Sbjct: 488 KVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQ 547

Query: 449 CYTSLVS 455
            YT  +S
Sbjct: 548 TYTLKIS 554



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 158/327 (48%), Gaps = 34/327 (10%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           +YG  P    + + +  LC EG++++A  +F     +G+ A  V + +L++G+C+  ++D
Sbjct: 399 EYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDID 458

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
             F L   M      PDV+TY+ LI+GLCK  RLD A  LL +M ++G+ P    F  LI
Sbjct: 459 SAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILI 518

Query: 242 DGHCKNGRIDMAGDMK--EARKIVDEMCTNGLNPDKITYTI-----LLDGFCKEGDLESA 294
                     M  D K  +A K+ ++M ++G  PDK TYT+       +G  KE +++ A
Sbjct: 519 K--------QMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMA 570

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           +    EM + G+  D   + A+I  +   G   +A     +ML V + PD  TY+++++ 
Sbjct: 571 V---VEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNY 627

Query: 355 FCKNGDTKTGF---------------RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            C N D    F                L ++M      P + TY AL+ GLC   +L+  
Sbjct: 628 MC-NKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEV 686

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHC 426
             LL  M    ++ D+   + LL  +C
Sbjct: 687 EWLLLKMQGNSILLDEDMSDYLLGCYC 713



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 314 TALISGFCRGGKVVEAERMLRE---MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            ALI+   RG +      +L     MLK G  P+  TY  +I+  CK          L  
Sbjct: 56  AALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVR 115

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM-LDLGVVPDDITYNILLEGHCKHG 429
           MR  G  P   TYN LM GLC+ G L  A  L   M    G   D  +Y IL++G C  G
Sbjct: 116 MREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAG 175

Query: 430 NPED 433
             +D
Sbjct: 176 RIDD 179


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 178/334 (53%), Gaps = 12/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ + +L++ LC+  K K A+ VF E  + G     +++ TLI    +A  +DE  R+
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
                   +  DV T + ++ GLCK +RLDDA   + EM + G+ PN+V ++ L+ G  +
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQ 240

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G +D     +  R   +E    G + +   Y   LD  CK G L+ A    +E+ + G+
Sbjct: 241 HGELD-----RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGV 295

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V ++ LI+ F R G+   +  +L +M + G+KPD  TY+ +I+  CK    +  FR
Sbjct: 296 VPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFR 355

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL+ M + G  P V TYN++M+GLCK G++   + + + ML     PD +TY+I++ G  
Sbjct: 356 LLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLS 415

Query: 427 KHGNPEDFDKL-----QSEKGLVSDYACYTSLVS 455
           K G  +   KL      S +G   D A Y+ +++
Sbjct: 416 KAGMLDSAVKLFELIKSSREG--PDAAAYSMVIT 447



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 180/351 (51%), Gaps = 19/351 (5%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G       F +L  KL +  K  +   +F     RG+     ++  +++G C A  
Sbjct: 10  VVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGM 69

Query: 180 LDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            ++   L  V E SG+  P V+ Y+ +I GLC+ +R+ DA  +L +M E  + PN   +T
Sbjct: 70  ANQALEL--VRELSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYT 127

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L++G C++ +  +      AR++  EM  NG  P+ ITY  L+    + G+++ AL + 
Sbjct: 128 ILLNGLCRSNKTKL------AREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181

Query: 299 KEMIKRGIEL--DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
            E  +R +EL  D +  T ++ G C+  ++ +A + + EM ++G++P++ TY+ ++  F 
Sbjct: 182 IE--QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFR 239

Query: 357 KNGDTKTGFRLLKE--MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           ++G+     R  +E   R  G L A   Y   ++ LCK G L  A   ++ +   GVVPD
Sbjct: 240 QHGELDRVIRFFEEEKARKGGSLEAA-AYPGYLDALCKAGYLDRARKSVEELRQSGVVPD 298

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
            +TY++L+    + G  +   +L  +    G+  D   Y++L++   K R+
Sbjct: 299 VVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERK 349



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 14/334 (4%)

Query: 49  ILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
           ++E R   LP  V+    IV        LDDA++    +R+   R        L+    +
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQ 240

Query: 107 -TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
              L  V   F  E    G S     +   +  LCK G +  A+   +E  + G+    V
Sbjct: 241 HGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVV 300

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +++ LIN   +A   D    L   M  +G++PDV TYS LIN LCKE +  DA  LL  M
Sbjct: 301 TYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELM 360

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
              G  PN V + +++DG CK+G++D      E  ++ + M  +  +PD +TY+I+++G 
Sbjct: 361 EAAGSPPNVVTYNSVMDGLCKSGKMD------EVHRVYEMMLKSRCSPDVVTYSIIMNGL 414

Query: 286 CKEGDLESALDIRKEMIKRGIE-LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            K G L+SA+ +  E+IK   E  D  A++ +I+  CR GK+ EA  M   M +V +  D
Sbjct: 415 SKAGMLDSAVKLF-ELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGM-EVTVAGD 472

Query: 345 DATYTM--VIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +    +  ++   C    T +  R+++  R  GH
Sbjct: 473 NICRALAGLVAALCDAKRTDSARRIVEVARERGH 506



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 16/247 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YS +VH    H    +         ++KG    A+ +           PG  LDAL    
Sbjct: 231 YSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAY-----------PGY-LDAL---- 274

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
              G+LD A +    LR+            LI+   R      +L    ++   G  P V
Sbjct: 275 CKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDV 334

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             ++ L++ LCKE K +DA  + +     G     V++N++++G CK+  +DE  R+  +
Sbjct: 335 VTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEM 394

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M  S   PDV TYS ++NGL K   LD A  L   +      P+   ++ +I   C+ G+
Sbjct: 395 MLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGK 454

Query: 250 IDMAGDM 256
           ++ A  M
Sbjct: 455 LEEACGM 461



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + + +++ G ++D+ AFT L +   R  K  E  R+   +   G+   + TY +V+D  C
Sbjct: 6   LERSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLC 65

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             G       L++E+ S  + P V  YN ++ GLC+  ++ +A  +L+ M++  +VP+  
Sbjct: 66  GAGMANQALELVREL-SGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVF 124

Query: 417 TYNILLEGHCK 427
           TY ILL G C+
Sbjct: 125 TYTILLNGLCR 135



 Score = 38.1 bits (87), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A+ + R +++ G K D   +T++     +        RL   + S G +    TY  +++
Sbjct: 3   AKLLERSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVD 62

Query: 389 GLCKHGQLKNANMLLDTMLDLGVV--PDDITYNILLEGHCKHGNPEDFDKL---QSEKGL 443
           GLC  G    AN  L+ + +L  V  P    YN ++ G C+     D  K+     E+ +
Sbjct: 63  GLCGAGM---ANQALELVRELSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESI 119

Query: 444 VSDYACYTSLVS---KSSKYRQKR 464
           V +   YT L++   +S+K +  R
Sbjct: 120 VPNVFTYTILLNGLCRSNKTKLAR 143


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 182/348 (52%), Gaps = 11/348 (3%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           V+ GF L  ++   G SP+V+++ +L+   C+ G I  A+++F      GL A    +  
Sbjct: 123 VSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTI 182

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +ING  K     +GF L   M+  G+ P++YTY++LI   C++ +L  A  +  E+ +RG
Sbjct: 183 MINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRG 242

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
           +  N V +  LI G C+ G++       +A  +++ M    +NP   T+ +L+DG C  G
Sbjct: 243 VACNAVTYNILIGGLCRKGQVS------KAEGLLERMKRAHINPTTRTFNMLMDGLCNTG 296

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            L+ AL   +++   G+    V +  LISGF + G       ++REM   G+ P   TYT
Sbjct: 297 QLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYT 356

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++++ F ++ D +  + +   M+  G +P   TY  L++GLC  G +  A+ L  +M+++
Sbjct: 357 ILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEM 416

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            + P+D+ YN ++ G+CK  N     K   E    G+  + A Y S +
Sbjct: 417 HLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTI 464



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++Y +N L+ + C++GK+  A  VFDE  KRG+   AV++N LI G C+   + + 
Sbjct: 207 GVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKA 266

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M+ + + P   T++ L++GLC   +LD A   L ++   GL P  V +  LI G
Sbjct: 267 EGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISG 326

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K       G+     ++V EM   G++P K+TYTIL++ F +  D+E A ++   M +
Sbjct: 327 FSK------VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKR 380

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D   +  LI G C  G +VEA ++ + M+++ L+P+D  Y  +I+ +CK  ++  
Sbjct: 381 IGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYK 440

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
             + L+EM  +G  P V +Y + +  LCK G+   A  LL  M + G+ P +
Sbjct: 441 ALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPE 492



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 162/334 (48%), Gaps = 10/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+SPS + FN  +  L K G +      F E+  R       SF   I   C+  N+ +G
Sbjct: 68  GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR-TQFDVYSFGITIKAFCENGNVSKG 126

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F L + ME  G+ P+V+ Y+ LI   C+   +D A+++   M + GL  N  I+T +I+G
Sbjct: 127 FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMING 186

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K G      ++ +  K+V      G+ P+  TY  L+  +C++G L  A  +  E+ K
Sbjct: 187 FFKKGYKKDGFELYQKMKLV------GVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISK 240

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           RG+  + V +  LI G CR G+V +AE +L  M +  + P   T+ M++D  C  G    
Sbjct: 241 RGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDK 300

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
               L++++  G  P + TYN L++G  K G     + L+  M D G+ P  +TY IL+ 
Sbjct: 301 ALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMN 360

Query: 424 GHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
              +  + E   +   L    GLV D   Y  L+
Sbjct: 361 TFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLI 394



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 7/291 (2%)

Query: 57  LPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP L   ++L+  Y   G L  A + F  + K      A     LI  + R    +   G
Sbjct: 209 LPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEG 268

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
               +     +P+   FN+LM  LC  G++  A    ++    GL  T V++N LI+G  
Sbjct: 269 LLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFS 328

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  N      L   ME  G+ P   TY+ L+N   + + ++ A  + H M   GL P+  
Sbjct: 329 KVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQH 388

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  LI G C      + G+M EA K+   M    L P+ + Y  +++G+CKE +   AL
Sbjct: 389 TYGVLIHGLC------IKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKAL 442

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
              +EM+K G+  +  ++ + I   C+ GK +EA+R+L+EM + GLKP ++
Sbjct: 443 KFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPES 493



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 21/313 (6%)

Query: 157 KRGLHATAV---SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           +R L++ +V     + +IN   +++ L++      +M   G  P  ++++  ++ L K  
Sbjct: 28  QRNLNSESVCGRPRDAVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSG 87

Query: 214 RLDDAELLLHEMCERGLTPNDVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            LD       E   R  T  DV  F   I   C+NG +       +  +++ +M T G++
Sbjct: 88  NLDRTWGFFTEYLGR--TQFDVYSFGITIKAFCENGNVS------KGFELLAQMETMGVS 139

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+   YTIL++  C+ GD++ A  +   M   G+  +   +T +I+GF + G   +   +
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            ++M  VG+ P+  TY  +I  +C++G     F++  E+   G      TYN L+ GLC+
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS--EK----GLVSD 446
            GQ+  A  LL+ M    + P   T+N+L++G C  G     DK  S  EK    GL   
Sbjct: 260 KGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTG---QLDKALSYLEKLKLIGLCPT 316

Query: 447 YACYTSLVSKSSK 459
              Y  L+S  SK
Sbjct: 317 LVTYNILISGFSK 329


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 162/310 (52%), Gaps = 6/310 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F+  ++  G  P+V  +N LMH LC +  + DA  VF++    G      +++ LI+
Sbjct: 335 ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+ KA +LD    + + M   G  P+V  Y+ +++ LC+ +  + A  L+  M      P
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V F T I G C +GR+D A       K+ D+M  +G  P+  TY  LLD   K+    
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWA------IKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFG 508

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  + K+M  RGIEL+ V +  +I G+C  G + EA  +L +M+  G KPD  T  +VI
Sbjct: 509 EAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVI 568

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D +CK G      +L+  + +    P +  Y +L++G+C H  ++ A + L  ML  G+ 
Sbjct: 569 DAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGIS 628

Query: 413 PDDITYNILL 422
           P+  T+N+L+
Sbjct: 629 PNVATWNVLV 638



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 175/374 (46%), Gaps = 46/374 (12%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L   ++PSV V+N L++ +CKE   ++A  + DE   +G+    +S+ T+IN    A N+
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNV 297

Query: 181 D-------------------------EGFRLKS----------VMEGSGMRPDVYTYSAL 205
           +                         +GF LK            M   G+ P+V  Y+AL
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
           ++GLC +  L DA  + ++M   G  PN   ++ LIDG+ K      AGD+  A ++ + 
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAK------AGDLDGASEVWNW 411

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M T+G +P+ + YT ++D  C+      A  + + M       + V F   I G C  G+
Sbjct: 412 MITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGR 471

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V  A ++  +M   G  P+  TY  ++D   K+      F L+K+M   G    + TYN 
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEK 441
           ++ G C  G L  A  LL  M+  G  PD IT NI+++ +CK G      +  D+L + K
Sbjct: 532 IIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591

Query: 442 GLVSDYACYTSLVS 455
               D   YTSL+S
Sbjct: 592 -WHPDIIAYTSLIS 604



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 137/268 (51%), Gaps = 14/268 (5%)

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S M+  GM P+V+TY+ L+  LCK NR+D A  LL EM  +G  P++V +TTLI   CK 
Sbjct: 170 SNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKL 229

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G++      KEAR++          P    Y  L++G CKE   E A  +  EM+ +GI+
Sbjct: 230 GKV------KEAREL-----AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGID 278

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + +++T +I+     G V  +  +L +M   G  P+  T+T +I  F   G +      
Sbjct: 279 PNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDF 338

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M  +G +P V  YNALM+GLC    L +A  + + M   G  P+  TY+ L++G+ K
Sbjct: 339 WDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAK 398

Query: 428 HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            G   D D        +  + C+ ++V+
Sbjct: 399 AG---DLDGASEVWNWMITHGCHPNVVA 423



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 151/317 (47%), Gaps = 11/317 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  + D+   P+V ++N ++  L  E + +    ++    K G+     ++N L+ 
Sbjct: 130 ALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLK 189

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             CK   +D   +L   M   G  PD  +Y+ LI+ LCK  ++ +A  L         TP
Sbjct: 190 ALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL-----AMSFTP 244

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +  ++  LI+G CK    +      EA +++DEM   G++P+ I+YT +++     G++E
Sbjct: 245 SVPVYNALINGVCKEYTFE------EAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVE 298

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            +L +  +M  RG   +   FT+LI GF   G   EA      M++ G+ P+   Y  ++
Sbjct: 299 LSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALM 358

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
              C          +  +M  +G  P V TY+AL++G  K G L  A+ + + M+  G  
Sbjct: 359 HGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH 418

Query: 413 PDDITYNILLEGHCKHG 429
           P+ + Y  +++  C++ 
Sbjct: 419 PNVVAYTCMVDVLCRNS 435



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+H + SK+ +G + S+F   +E  G         AL+  Y   G LD A + +  +  H
Sbjct: 357 LMHGLCSKRSLGDAVSVFNQ-MEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH 415

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                     C++D + R ++          +      P+   FN  +  LC  G++  A
Sbjct: 416 GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWA 475

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             VFD+ G  G      ++N L++   K +   E F L   ME  G+  ++ TY+ +I G
Sbjct: 476 IKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYG 535

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            C    L +A  LL +M  RG  P+ +    +ID +CK G++++      A +++D +  
Sbjct: 536 YCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNI------AIQLMDRLSA 589

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
              +PD I YT L+ G C    +E A+   + M+  GI  +   +  L+
Sbjct: 590 GKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 11/247 (4%)

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
            KS+      +    TY  +I  L  E  +D  + LL +M   G++ ++ +F ++I    
Sbjct: 63  FKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVI---- 118

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             G    AG  ++A K    M    + P    Y  +LD    E   +    I   M K G
Sbjct: 119 --GSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDG 176

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E +   +  L+   C+  +V  A ++L EM   G  PD+ +YT +I   CK G  K   
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L          P+V  YNAL+NG+CK    + A  LLD M++ G+ P+ I+Y  ++   
Sbjct: 237 ELAMSFT-----PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINAL 291

Query: 426 CKHGNPE 432
              GN E
Sbjct: 292 SDAGNVE 298



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +TY ++++    E +++    + ++M   GI      F ++I  + R G   +A +    
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M    +KP    Y  ++D        +    +   M+ DG  P V TYN L+  LCK+ +
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNR 196

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           +  A+ LL  M   G  PD+++Y  L+   CK G  ++  +L
Sbjct: 197 VDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 199/426 (46%), Gaps = 20/426 (4%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           + G    A+    ILE  G     +  + L+  Y   G +D A+Q          R+   
Sbjct: 154 RSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLE-------RMSVA 206

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYS----PSVYVFNVLMHKLCKEGKIKDAQMV 151
                 + ++R+   +  L   +E+LD        P V  + +L+   C +  +  A  +
Sbjct: 207 PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKL 266

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            DE  K+G     V++N LING CK   LDE  +  + M   G +P+V T++ ++  +C 
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS 326

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
             R  DAE LL +M  +G +P+ V F  LI+  C+   +  A D      ++++M  +G 
Sbjct: 327 TGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAID------VLEKMPKHGC 380

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P+ ++Y  LL GFC+E  ++ A++  + M+ RG   D V +  L++  C+ GK   A  
Sbjct: 381 MPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVE 440

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L ++   G  P   TY  VID   K G T+    LL+EMR  G  P + TY+ L+ GL 
Sbjct: 441 ILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLG 500

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
             G++  A  +   M  L + P  +TYN ++ G CK        DF     EKG     A
Sbjct: 501 CEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKA 560

Query: 449 CYTSLV 454
            YT L+
Sbjct: 561 TYTILI 566



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 160/316 (50%), Gaps = 9/316 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L F   ++  G  P V     L+   C+ GK + A  + +     G     +++N LI G
Sbjct: 127 LKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGG 186

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           +CK+  +D+  +   V+E   + PDV TY+ ++  LC   +L +A  +L    +R   P+
Sbjct: 187 YCKSGEIDKALQ---VLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPD 243

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + +T LI+  C +  +       +A K++DEM   G  PD +TY +L++G CKEG L+ 
Sbjct: 244 VITYTILIEATCNDSGVG------QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDE 297

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+     M   G + + +    ++   C  G+ ++AER+L +ML+ G  P   T+ ++I+
Sbjct: 298 AIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILIN 357

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C+         +L++M   G +P   +YN L++G C+  ++  A   L+ M+  G  P
Sbjct: 358 FLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 417

Query: 414 DDITYNILLEGHCKHG 429
           D +TYN LL   CK G
Sbjct: 418 DIVTYNTLLTALCKDG 433



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 169/329 (51%), Gaps = 12/329 (3%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +  N+ + KL + G++++     +    +G     ++  +LI G C++    +  R+  +
Sbjct: 108 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEI 167

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +E SG  PDV TY+ LI G CK   +D A  +L  M    + P+ V + T++   C +G+
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGK 224

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 +KEA +++D        PD ITYTIL++  C +  +  A+ +  EM K+G + D
Sbjct: 225 ------LKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPD 278

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  LI+G C+ G++ EA + L  M   G +P+  T+ +++   C  G      RLL 
Sbjct: 279 VVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLA 338

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P+V T+N L+N LC+   L  A  +L+ M   G +P+ ++YN LL G C+  
Sbjct: 339 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEK 398

Query: 430 NPE---DFDKLQSEKGLVSDYACYTSLVS 455
             +   ++ ++   +G   D   Y +L++
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNTLLT 427



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 10/194 (5%)

Query: 269 NGLNP----DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           NG+N     ++    I L    + G+LE  L   + MI +G   D +A T+LI GFCR G
Sbjct: 97  NGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSG 156

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           K  +A R++  +   G  PD  TY ++I  +CK+G+     ++L+ M      P V TYN
Sbjct: 157 KTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYN 213

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
            ++  LC  G+LK A  +LD  +     PD ITY IL+E  C         KL  E   K
Sbjct: 214 TILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKK 273

Query: 442 GLVSDYACYTSLVS 455
           G   D   Y  L++
Sbjct: 274 GCKPDVVTYNVLIN 287


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 171/328 (52%), Gaps = 9/328 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y   V++  LC EG++++ + + +     G    AV +N LI+G+C+  ++  G  L   
Sbjct: 277 YSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGE 336

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ME  G+ P V TY A+I+ L +++ L   E LL EM ERGL+PN  I+ T+I   CK   
Sbjct: 337 MEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCK--- 393

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   +A  ++++M  +  +PD +T+  L+  FC+EGD+E AL + +E I+R +E +
Sbjct: 394 ---CRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPN 450

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            +++T LI GFC  G+V+ A  +L EM+  G  PD  T   +I     +G       + +
Sbjct: 451 QLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVRE 510

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M     +P    YN L++GLCK   L  A  LL  ML+  V PD   Y  L++G  +  
Sbjct: 511 KMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSD 570

Query: 430 NPEDFDKL---QSEKGLVSDYACYTSLV 454
              D  K+     EKG   D   Y +++
Sbjct: 571 KLSDARKIFEFMEEKGGYRDIVAYNAMI 598



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 156/298 (52%), Gaps = 6/298 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           + P V  FN L+   C+EG +++A  +  E  +R L    +S+  LI+G C    +    
Sbjct: 412 FDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVAS 471

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M G G  PDV T  ALI+GL    ++D+A ++  +M ER + P+  I+  LI G 
Sbjct: 472 DLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGL 531

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK  R+     +  A+ ++ EM    + PDK  YT L+DGF +   L  A  I + M ++
Sbjct: 532 CKK-RM-----LSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEK 585

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   D VA+ A+I G+C+ G + EA   +  M KVG  PD+ TYT +ID + K GD K  
Sbjct: 586 GGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAA 645

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
            R L +M      P + TY +L+ G C  G   +A +L  +M   G+ P+ + Y +L+
Sbjct: 646 LRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLI 703



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 158/307 (51%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +  ++H L ++  +   + +  E  +RGL      +NT+I   CK ++  + 
Sbjct: 341 GIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQA 400

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             + + M  S   PDV T++ LI   C+E  +++A  LL E   R L PN + +T LI G
Sbjct: 401 LAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHG 460

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C  G + +A D+      + EM   G  PD +T   L+ G    G ++ AL +R++M +
Sbjct: 461 FCVRGEVMVASDL------LVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAE 514

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R +  D   +  LISG C+   +  A+ +L EML+  ++PD   YT +ID F ++     
Sbjct: 515 RQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSD 574

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ + M   G    +  YNA++ G CK G +  A M + +M  +G +PD+ TY  L++
Sbjct: 575 ARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLID 634

Query: 424 GHCKHGN 430
           G+ K G+
Sbjct: 635 GYAKKGD 641



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 167/341 (48%), Gaps = 11/341 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+ + G SP+V ++N +++ LCK      A  V ++          V+FNTLI   C+ 
Sbjct: 370 WEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCRE 429

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            +++E  +L        + P+  +Y+ LI+G C    +  A  LL EM  RG TP+ V  
Sbjct: 430 GDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTL 489

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             LI G   +G++D      EA  + ++M    + PD   Y +L+ G CK+  L +A ++
Sbjct: 490 GALIHGLVVSGQVD------EALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNL 543

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             EM+++ ++ D   +T LI GF R  K+ +A ++   M + G   D   Y  +I  +CK
Sbjct: 544 LVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCK 603

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           +G        +  MR  G +P   TY  L++G  K G +K A   L  M+     P+ +T
Sbjct: 604 SGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVT 663

Query: 418 YNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
           Y  L+ G+C  GN +     F  +QSE GL  +   YT L+
Sbjct: 664 YASLICGYCNIGNTDSAEVLFASMQSE-GLFPNVVHYTVLI 703



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 175/369 (47%), Gaps = 30/369 (8%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E++  G++P V     L+H L   G++ +A MV ++  +R +   A  +N LI+G CK 
Sbjct: 475 VEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKK 534

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + L     L   M    ++PD + Y+ LI+G  + ++L DA  +   M E+G   + V +
Sbjct: 535 RMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAY 594

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             +I G+CK+G       M EA   +  M   G  PD+ TYT L+DG+ K+GD+++AL  
Sbjct: 595 NAMIKGYCKSGM------MNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRF 648

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             +M+KR  + + V + +LI G+C  G    AE +   M   GL P+   YT++I    K
Sbjct: 649 LCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFK 708

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL--CKHG----------QLKNANMLLDT 405
                      + M  +   P   T + L+NGL  C++G          Q    + LLD 
Sbjct: 709 KDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDV 768

Query: 406 MLDL---GVVPDDITYNILLEGHCKH---GNPEDFDKLQSEKGLVSDYACYTSL------ 453
              L   G+ P    YN ++   C+H   G   +  +  S KG + D   + SL      
Sbjct: 769 FKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSS 828

Query: 454 VSKSSKYRQ 462
           V KS K+R 
Sbjct: 829 VGKSGKWRS 837



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 161/333 (48%), Gaps = 19/333 (5%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +  L+H  C  G++  A  +  E   RG     V+   LI+G   +  +DE   +
Sbjct: 449 PNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMV 508

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           +  M    + PD   Y+ LI+GLCK+  L  A+ LL EM E+ + P+  ++TTLIDG  +
Sbjct: 509 REKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIR 568

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           + +      + +ARKI + M   G   D + Y  ++ G+CK G +  A+     M K G 
Sbjct: 569 SDK------LSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGC 622

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T LI G+ + G +  A R L +M+K   KP+  TY  +I  +C  G+T +   
Sbjct: 623 IPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEV 682

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG-- 424
           L   M+S+G  P V  Y  L+  L K  +   A    + ML     P+D T + L+ G  
Sbjct: 683 LFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLT 742

Query: 425 HCKHG----NPEDFDKLQSE-------KGLVSD 446
           +C++G    N  D D+   +       KGL+SD
Sbjct: 743 NCRYGMINSNCSDTDQAHKKSALLDVFKGLISD 775



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 148 AQMVFDEFGKRGLHATAVSFNT--LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
           A+ ++ E   R     A  ++T  ++ G C    ++EG RL     G G  P    Y+ L
Sbjct: 258 ARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVL 317

Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265
           I+G C+   +    LLL EM  +G+ P  V +  +I        +    D+ +   ++ E
Sbjct: 318 IDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHW------LGRKSDLTKIESLLWE 371

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
           M   GL+P+   Y  ++   CK      AL +  +M+    + D V F  LI+ FCR G 
Sbjct: 372 MKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGD 431

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V EA ++LRE ++  L+P+  +YT +I  FC  G+      LL EM   GH P V T  A
Sbjct: 432 VEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGA 491

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L++GL   GQ+  A M+ + M +  V+PD   YN+L+ G CK
Sbjct: 492 LIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCK 533



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 35/379 (9%)

Query: 56  HLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTL 114
           H P +V L AL+   V  G +D+A+     + +      A     LI  + +  + +   
Sbjct: 482 HTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAK 541

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
              +E+L+    P  +V+  L+    +  K+ DA+ +F+   ++G +   V++N +I G+
Sbjct: 542 NLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGY 601

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK+  ++E     S M   G  PD +TY+ LI+G  K+  +  A   L +M +R   PN 
Sbjct: 602 CKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNI 661

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + +LI G+C  G  D       A  +   M + GL P+ + YT+L+    K+     A
Sbjct: 662 VTYASLICGYCNIGNTD------SAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQA 715

Query: 295 LDIRKEMIKRGIELDNVAFTALISGF--CRGGKVVEAERMLREMLKVGLKPDDATY--TM 350
               + M+      ++     L++G   CR G           M+       D  +  + 
Sbjct: 716 AAYFEHMLLNHCSPNDATMHYLVNGLTNCRYG-----------MINSNCSDTDQAHKKSA 764

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           ++D F             K + SDG  P +  YNA++  LC+H  L  A  L + M + G
Sbjct: 765 LLDVF-------------KGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKG 811

Query: 411 VVPDDITYNILLEGHCKHG 429
            +PD +T+  LL G    G
Sbjct: 812 CLPDPVTFLSLLYGFSSVG 830



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 138/343 (40%), Gaps = 62/343 (18%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMG------------------SSASLFASILE 51
           Y+ ++  L   +M S A++LL  ++ +K                     S A      +E
Sbjct: 524 YNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFME 583

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
            +G +   +  +A++  Y   G +++A+ C   +RK                        
Sbjct: 584 EKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRK------------------------ 619

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                       G  P  + +  L+    K+G IK A     +  KR      V++ +LI
Sbjct: 620 -----------VGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLI 668

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            G+C   N D    L + M+  G+ P+V  Y+ LI  L K+++   A      M     +
Sbjct: 669 CGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCS 728

Query: 232 PNDVIFTTLIDG--HCKNGRIDM-AGDMKEARK------IVDEMCTNGLNPDKITYTILL 282
           PND     L++G  +C+ G I+    D  +A K      +   + ++GL+P    Y  ++
Sbjct: 729 PNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAII 788

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
              C+   L  A++++++M  +G   D V F +L+ GF   GK
Sbjct: 789 FSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGK 831



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 102/268 (38%), Gaps = 35/268 (13%)

Query: 222 LHEMCERGLTPNDV---------------------------IFTTLIDG-HCKNGRIDMA 253
           L  M   G+TP                              +   L D  HC      + 
Sbjct: 191 LRSMSLAGVTPTRGSLGALAAAYADAGMEAKAAEACARARDLHGALPDAPHCNRLLRLLV 250

Query: 254 GDMKE--ARKIVDEMCTNGLN--PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
              +   AR++  EM         D  +  +++ G C EG +E    + +     G    
Sbjct: 251 DRRRWECARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPG 310

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V +  LI G+CR G V     +L EM   G+ P   TY  +I    +  D      LL 
Sbjct: 311 AVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLW 370

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           EM+  G  P V+ YN ++  LCK      A  +L+ M+     PD +T+N L+   C+ G
Sbjct: 371 EMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREG 430

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLV 454
           + E+  KL  E   + L  +   YT L+
Sbjct: 431 DVEEALKLLREAIRRELEPNQLSYTPLI 458


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 194/382 (50%), Gaps = 12/382 (3%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC-----RCLIDRMMRTNLPTVTLGF 116
           L AL+ +    G  D A   F+  R    ++PA          +++  +R +        
Sbjct: 82  LIALIRILAKSGLSDLAFSQFQSFRS---QVPANPPPVYLYNMVLESSLREDKVDSFSWL 138

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y +++  G SP  Y  N+L+  LC  G+ +DA+ VFD+ G +G      SF  L+ G+C+
Sbjct: 139 YKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCR 198

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A        L   M   G++P+   Y+ LI+  C+E R ++AE L+  M E GL P+ V 
Sbjct: 199 AGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVT 258

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTILLDGFCKEGDLESAL 295
           F + I   C  G+I  A  +    +I +E+   GL  P+  T+ ++L+GFCKEG LE A 
Sbjct: 259 FNSRISALCSAGKILEASRIFRDMQIDEEL---GLPRPNITTFNLMLEGFCKEGMLEEAK 315

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + + M + G  ++  ++   + G  R GK++EA+  L+EM+  G++P+  ++  V+D  
Sbjct: 316 TLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGL 375

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CKNG       ++  M S G  P   TY+ L++G C  G++  AN +L  M+  G  P+ 
Sbjct: 376 CKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNT 435

Query: 416 ITYNILLEGHCKHGNPEDFDKL 437
            T NILL    K G   + +KL
Sbjct: 436 YTCNILLHSLWKEGRIFEAEKL 457



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 173/326 (53%), Gaps = 17/326 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D G  P++Y FN +M  LCK G I DA+M+       G+    V+++TL++G C   
Sbjct: 355 EMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTG 414

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + +   +   M   G  P+ YT + L++ L KE R+ +AE LL +M ER    ++V   
Sbjct: 415 KVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCN 474

Query: 239 TLIDGHCKNGRIDMAGDMKEARKI---------------VDEMCTNGLN--PDKITYTIL 281
            +IDG CK+G++D A ++ E   I               + +  +NG    PD ITY+I+
Sbjct: 475 IVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSII 534

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           ++G CK G L+ A     EM+ + +  D++ +   I  FC+ GK+  A R+L++M K G 
Sbjct: 535 INGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGC 594

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
                TY  +I            + LL +M+  G  P + TYN +++ LC+ G++K+A  
Sbjct: 595 NKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATS 654

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCK 427
           LLD ML  G+ P+  ++ +L++  CK
Sbjct: 655 LLDEMLQKGISPNISSFRLLIKAFCK 680



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 172/349 (49%), Gaps = 32/349 (9%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +N+ +  L + GK+ +AQ+   E   +G+     SFNT+++G CK   + +   +  +M 
Sbjct: 333 YNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMI 392

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
            SG+ PD  TYS L++G C   ++  A  +LHEM  RG +PN      L+    K GRI 
Sbjct: 393 SSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRI- 451

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL--- 308
                 EA K++ +M     + D +T  I++DG CK G L+ A++I + M   G      
Sbjct: 452 -----FEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGN 506

Query: 309 --------------------DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
                               D + ++ +I+G C+ G++ EA +   EM+   L PD   Y
Sbjct: 507 LGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIY 566

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
              I  FCK+G   + FR+LK+M   G   +++TYN+L+ GL    Q+     LLD M +
Sbjct: 567 DTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKE 626

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
            G+ P+  TYN ++   C+ G  +D   L  E   KG+  + + +  L+
Sbjct: 627 KGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLI 675



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 230/525 (43%), Gaps = 94/525 (17%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           + L +Y+  +  LV +    +A+  L  +V K G+  +   F ++++  G    GL+ DA
Sbjct: 328 MELESYNIWLLGLVRNGKLLEAQLALKEMVDK-GIEPNIYSFNTVMD--GLCKNGLISDA 384

Query: 65  LMI--VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
            MI  + +  G   D +    LL          GC C   ++++ N          E++ 
Sbjct: 385 RMIMGLMISSGIGPDTVTYSTLLH---------GC-CSTGKVLKAN------NILHEMMR 428

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G SP+ Y  N+L+H L KEG+I +A+ +  +  +R      V+ N +I+G CK+  LDE
Sbjct: 429 RGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDE 488

Query: 183 GFRL-----------------------KSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
              +                        S   G    PD+ TYS +INGLCK  RLD+A 
Sbjct: 489 AVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEAR 548

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
               EM  + L P+ +I+ T I   CK+G+I        A +++ +M   G N    TY 
Sbjct: 549 KKFIEMVGKSLHPDSIIYDTFIHSFCKHGKIS------SAFRVLKDMEKRGCNKSLQTYN 602

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G   +  +     +  +M ++GI  +   +  +IS  C GG++ +A  +L EML+ 
Sbjct: 603 SLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQK 662

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLPAVET------------ 382
           G+ P+ +++ ++I  FCK  D    F ++KE+        GH  A+ +            
Sbjct: 663 GISPNISSFRLLIKAFCKASD----FGVVKEVFEIALSICGHKEALYSLMFNELLIGGEV 718

Query: 383 ---------------------YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                                YN L+  LCK   L+NA+ +L  M+D G   D  ++  +
Sbjct: 719 SEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPV 778

Query: 422 LEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKSSKY-RQKR 464
           ++G  K G   D D+L      + S+      +    S + RQKR
Sbjct: 779 IDGLGKRGKKHDADELAERMMDMASEGMVENKITRNESAFNRQKR 823


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 176/346 (50%), Gaps = 11/346 (3%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATAVSFN 168
           P + +  +L I  +G  PSV  FN L++ L +  +     ++F    K+ G+     + N
Sbjct: 186 PKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCN 245

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L+   CK  ++D   R+   M   G  P+V TY+ ++ G   +  +  A  +  E+ +R
Sbjct: 246 ILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDR 305

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G  P+   +T L+DG+CK GR        +A K++DEM  N + P+ +TY ++++ +CKE
Sbjct: 306 GWVPDPTTYTILMDGYCKKGR------FMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKE 359

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
                 L++  +M+++     +     +I   C  GKV  A  + +++LK    PD+A  
Sbjct: 360 KKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAIT 419

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           + +I   CK G      +L  E    G +P+  TYNAL+ G+C+ G+L  A  L D M++
Sbjct: 420 STLIHWLCKEGKVWEARKLFDEFE-KGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVE 478

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYT 451
            G VP+  TYN+L++G CK GN  +  ++  E    G + + A Y 
Sbjct: 479 KGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 8/303 (2%)

Query: 82  FRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140
           F+  RK +  +P    C  L+  + + N     +    E+   G+ P+V  +  ++    
Sbjct: 228 FKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYV 287

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
            +G +  A+ VF E   RG      ++  L++G+CK     +  ++   ME + + P+  
Sbjct: 288 SKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDV 347

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY  +I   CKE +  +   LL +M E+   P+  +   +ID  C+ G++++A ++   +
Sbjct: 348 TYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACEL--WK 405

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           K++ + CT    PD    + L+   CKEG +  A  +  E  K  I    + + ALI+G 
Sbjct: 406 KLLKKNCT----PDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIP-STLTYNALIAGM 460

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C GG++ EA R+   M++ G  P+  TY M+I  FCK G+ + G R+++EM  +G LP  
Sbjct: 461 CEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNK 520

Query: 381 ETY 383
            TY
Sbjct: 521 ATY 523



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 166/352 (47%), Gaps = 17/352 (4%)

Query: 114 LGFYLEILDYG------YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           L   L+I D+       ++ +   +  ++ KL K    +  + +  +  K  +      F
Sbjct: 114 LDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLF 173

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
            T+I  +  A       R    +   G++P V +++ L+N L +  R D   L+    C 
Sbjct: 174 ITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKN-CR 232

Query: 228 R--GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
           +  G+ PN      L+   CK   ID       A ++++EM   G  P+ +TYT +L G+
Sbjct: 233 KKFGIVPNVFTCNILVKALCKKNDID------AAIRVLEEMPAMGFIPNVVTYTTILGGY 286

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
             +GD+  A  +  E++ RG   D   +T L+ G+C+ G+ ++A +++ EM +  ++P+D
Sbjct: 287 VSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPND 346

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY ++I+ +CK   +     LL +M    ++P+      +++ LC+ G+++ A  L   
Sbjct: 347 VTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKK 406

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKL--QSEKGLVSDYACYTSLVS 455
           +L     PD+   + L+   CK G   +  KL  + EKG +     Y +L++
Sbjct: 407 LLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIA 458


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G++ +VY +N+L+  LC+  +   A  +  E  +  L    VS+NT+I G C+ K 
Sbjct: 133 MLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKE 192

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L++  +L + M+GSG    + T+  LI+  CK  ++D+A  LL EM  +GL  + +++T+
Sbjct: 193 LEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTS 252

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C  G +D        + + DE+   G +P  ITY  L+ GFCK G L+ A +I +
Sbjct: 253 LIRGFCDCGELD------RGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFE 306

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M++RG+  +   +T LI G C  GK  EA ++L  ML+   +P+  TY ++I+  CK+ 
Sbjct: 307 FMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDS 366

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV--PDDIT 417
                  +++ M+     P   TYN+L+ GLC  G L  A+ LL  ML       PD I+
Sbjct: 367 LVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVIS 426

Query: 418 YNILLEGHCK 427
           +N L+ G CK
Sbjct: 427 FNALIHGLCK 436



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 185/397 (46%), Gaps = 46/397 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       +G   E+   G    + V+  L+   C  G++   + +FDE  +RG
Sbjct: 218 LIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERG 277

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
               A+++NTLI G CK   L E   +   M   G+RP+VYTY+ LI+GLC   +  +A 
Sbjct: 278 DSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEAL 337

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL+ M ++   PN V +  +I+  CK+  +       +A +IV+ M      PD ITY 
Sbjct: 338 QLLNLMLQKDEEPNVVTYNIIINKLCKDSLV------ADALEIVELMKKRRTRPDNITYN 391

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRG--IELDNVAFTALISGFCRG-------------- 323
            LL G C +GDL+ A  +   M+K     + D ++F ALI G C+G              
Sbjct: 392 SLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLV 451

Query: 324 -----GKVVEAERMLREMLKVG----------------LKPDDATYTMVIDCFCKNGDTK 362
                G +V    +L   LK G                + P+  TYT +ID FCK G   
Sbjct: 452 EKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLN 511

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               LL +MR     P+V  YN L++ LCK G L  A  L + M      PD I++NI++
Sbjct: 512 VAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMI 571

Query: 423 EGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSK 456
           +G  K G+ +  + L    S  GL  D   Y+ L+++
Sbjct: 572 DGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINR 608



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 167/338 (49%), Gaps = 6/338 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  ++R+    V   FY ++L+     +    + L+    +  K   A  V     KRG
Sbjct: 78  LMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRG 137

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 ++N L+ G C+     +   L   M  + + PDV +Y+ +I G C+   L+ A 
Sbjct: 138 FAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKAL 197

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L +EM   G + + V +  LID  CK      AG M EA  ++ EM   GL  D I YT
Sbjct: 198 QLANEMQGSGCSWSLVTWGILIDAFCK------AGKMDEAMGLLKEMKHKGLEADLIVYT 251

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC  G+L+    +  E+++RG     + +  LI GFC+ G++ EA  +   M++ 
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMER 311

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P+  TYT +ID  C  G TK   +LL  M      P V TYN ++N LCK   + +A
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADA 371

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             +++ M      PD+ITYN LL G C  G+ ++  KL
Sbjct: 372 LEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKL 409



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 173/364 (47%), Gaps = 47/364 (12%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
             + E+L+ G SP    +N L+   CK G++K+A  +F+   +RG+     ++  LI+G 
Sbjct: 268 ALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGL 327

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C      E  +L ++M      P+V TY+ +IN LCK++ + DA  ++  M +R   P++
Sbjct: 328 CGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDN 387

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--LNPDKITYTILLDGFCK----- 287
           + + +L+ G C  G      D+ EA K++  M  +    +PD I++  L+ G CK     
Sbjct: 388 ITYNSLLGGLCAKG------DLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLH 441

Query: 288 ------------------------------EGDLESALDIRKEMIKRGIELDNVAFTALI 317
                                          GD+  A+++ K++    I  ++  +T +I
Sbjct: 442 QALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMI 501

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            GFC+ G +  A+ +L +M    L P    Y  ++   CK G     +RL +EM+ D   
Sbjct: 502 DGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSF 561

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---- 433
           P V ++N +++G  K G +K+A  LL  M   G+ PD  TY+ L+    K G  ++    
Sbjct: 562 PDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISF 621

Query: 434 FDKL 437
           FDK+
Sbjct: 622 FDKM 625



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 185/430 (43%), Gaps = 44/430 (10%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           +LF  +LE RG     +  + L+  +  LG L +A + F  + +   R        LID 
Sbjct: 268 ALFDEVLE-RGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDG 326

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           +         L     +L     P+V  +N++++KLCK+  + DA  + +   KR     
Sbjct: 327 LCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPD 386

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVM--EGSGMRPDVYTYSALINGLCKENRLDDA--- 218
            +++N+L+ G C   +LDE  +L  +M  + S   PDV +++ALI+GLCK NRL  A   
Sbjct: 387 NITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDI 446

Query: 219 ----------------ELLLHEMCERG----------------LTPNDVIFTTLIDGHCK 246
                            +LL+   + G                + PN   +TT+IDG CK
Sbjct: 447 YDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCK 506

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G +++A      + ++ +M  + L P    Y  LL   CK+G L+ A  + +EM +   
Sbjct: 507 TGMLNVA------KGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDS 560

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D ++F  +I G  + G +  AE +L  M   GL PD  TY+ +I+ F K G       
Sbjct: 561 FPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAIS 620

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
              +M   G  P     ++++      G+       +  ++D  VV D      +++  C
Sbjct: 621 FFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYMC 680

Query: 427 KHGNPEDFDK 436
                 D  K
Sbjct: 681 SSSGNMDIAK 690



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 9/300 (3%)

Query: 136 MHKLCKEG--KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
           +  LC++   ++K+A  VF +    G  + + + N L+    +++N +  F     M  +
Sbjct: 43  LRSLCEDSNPQLKNAVSVFQQAVDSG-GSLSFAGNNLMATLVRSRNHEVAFSFYRKMLET 101

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
               +  + S L+    +  +   A  +L  M +RG   N   +  L+ G C+N      
Sbjct: 102 DTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRN------ 155

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            +  +A  ++ EM  N L PD ++Y  ++ GFC+  +LE AL +  EM   G     V +
Sbjct: 156 LEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTW 215

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI  FC+ GK+ EA  +L+EM   GL+ D   YT +I  FC  G+   G  L  E+  
Sbjct: 216 GILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLE 275

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   TYN L+ G CK G+LK A+ + + M++ GV P+  TY  L++G C  G  ++
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKE 335



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 149/337 (44%), Gaps = 9/337 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK--HYFRIP 93
           K  + + A     +++ R T    +  ++L+      G LD+A +   L+ K   Y    
Sbjct: 364 KDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPD 423

Query: 94  ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153
                 LI  + + N     L  Y  +++   +  +   N+L++   K G +  A  ++ 
Sbjct: 424 VISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWK 483

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           +     +   + ++ T+I+G CK   L+    L   M  S + P V+ Y+ L++ LCK+ 
Sbjct: 484 QISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKG 543

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            LD A  L  EM      P+ + F  +IDG  K      AGD+K A  ++  M   GL+P
Sbjct: 544 TLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLK------AGDIKSAESLLVGMSHAGLSP 597

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D  TY+ L++ F K G L+ A+    +MI  G E D     +++      G+  +    +
Sbjct: 598 DLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFV 657

Query: 334 REMLKVGLKPDDATYTMVIDCFC-KNGDTKTGFRLLK 369
           ++++   +  D      V+D  C  +G+     RLL+
Sbjct: 658 KKLVDKDVVLDKELTCTVMDYMCSSSGNMDIAKRLLR 694



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 7/198 (3%)

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGD--LESALDIRKEMIKRGIELDNVAFTALI 317
           R +   +C+  +N    T T L    C++ +  L++A+ + ++ +  G  L + A   L+
Sbjct: 22  RLLSQRLCSKLVNTFSETETKL-RSLCEDSNPQLKNAVSVFQQAVDSGGSL-SFAGNNLM 79

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           +   R      A    R+ML+     +  + + +++CF +   T     +L  M   G  
Sbjct: 80  ATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFA 139

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             V  YN L+ GLC++ +   A  LL  M    ++PD ++YN ++ G C+    E   +L
Sbjct: 140 FNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQL 199

Query: 438 QSEKGLVSDYACYTSLVS 455
            +E   +    C  SLV+
Sbjct: 200 ANE---MQGSGCSWSLVT 214


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 185/388 (47%), Gaps = 26/388 (6%)

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           VY      +  +  F  + +  F    R C  ++  +  + +       Y  ++ +G  P
Sbjct: 213 VYTKKSMAEKCLLSFEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMP 272

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  FN ++    K G ++    ++ E  +R +  + V++N LING  K+  ++E  R  
Sbjct: 273 TVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFH 332

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M+ SG     Y+++ LI G CK+   D+A  +  EM   G+ P    +   I   C+ 
Sbjct: 333 GDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEF 392

Query: 248 GRID--------------------MAGDMK-----EARKIVDEMCTNGLNPDKITYTILL 282
           GRID                    M G +K     EA  + D++    +NP  +TY  L+
Sbjct: 393 GRIDDARELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLI 452

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG C+ G+LE A  +++EM  + I  D + +T L+ GF + G +  A  +  EML+ G+K
Sbjct: 453 DGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIK 512

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRS-DGHLPAVETYNALMNGLCKHGQLKNANM 401
           PD   YT       + GD++  FRL +EM + D H P +  YN  ++GLCK G L+ A  
Sbjct: 513 PDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIE 572

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHG 429
               +  +G+VPD +TY  ++ G+ + G
Sbjct: 573 FQRKIFRVGLVPDHVTYTTVIRGYLEKG 600



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 169/323 (52%), Gaps = 7/323 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L    +P V  +N LMH   K  K  +A ++FD+     ++ + V++NTLI+G C++ 
Sbjct: 400 ELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESG 459

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL+   RLK  M    + PDV TY+ L+ G  K   L  A  +  EM  +G+ P+   +T
Sbjct: 460 NLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYT 519

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDI 297
           T   G  +       GD ++A ++ +EM     + PD   Y + +DG CK G+LE A++ 
Sbjct: 520 TRTVGELR------LGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEF 573

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           ++++ + G+  D+V +T +I G+   G+   A  +  EML   L P   TY ++I    K
Sbjct: 574 QRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAK 633

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +  F+   EM+  G  P V T+NAL++G+CK G +  A   L  M + G+ P+  +
Sbjct: 634 AGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYS 693

Query: 418 YNILLEGHCKHGNPEDFDKLQSE 440
           Y IL+  HC     E+  KL  E
Sbjct: 694 YTILISKHCDLDKWEEVVKLYKE 716



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 168/370 (45%), Gaps = 49/370 (13%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ PSV   N+++  L     +  AQ V++     G+  T ++FNT+++   KA +L+  
Sbjct: 234 GFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLERV 293

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   M+   +     TY+ LING  K  ++++A     +M   G       F  LI+G
Sbjct: 294 DKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEG 353

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G  D      EA  + DEM   G+ P   TY I +   C+ G ++ A    +E++ 
Sbjct: 354 YCKQGLFD------EAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDA----RELLS 403

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                D V++  L+ G+ +  K VEA  +  ++    + P   TY  +ID  C++G+ + 
Sbjct: 404 SMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEG 463

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD--------- 414
             RL +EM S    P V TY  L+ G  K+G L  A  + D ML  G+ PD         
Sbjct: 464 AQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTV 523

Query: 415 --------------------------DIT-YNILLEGHCKHGNPE---DFDKLQSEKGLV 444
                                     D+T YN+ ++G CK GN E   +F +     GLV
Sbjct: 524 GELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLV 583

Query: 445 SDYACYTSLV 454
            D+  YT+++
Sbjct: 584 PDHVTYTTVI 593



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 137/280 (48%), Gaps = 11/280 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  L+    K G +  A  ++DE  ++G+     ++ T   G  +  + ++ FRL
Sbjct: 478 PDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRL 537

Query: 187 KSVMEGSGMR-PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              M       PD+  Y+  I+GLCK   L+ A     ++   GL P+ V +TT+I G+ 
Sbjct: 538 HEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYL 597

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + GR  MA      R + DEM +  L+P  ITY +L+ G  K G LE A     EM KRG
Sbjct: 598 EKGRFKMA------RDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRG 651

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + +   AL+ G C+ G + EA R L +M + G+ P+  +YT++I   C     +   
Sbjct: 652 VRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVV 711

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
           +L KEM      P   T+ AL     KH +  + +M LD+
Sbjct: 712 KLYKEMLDKEIEPDGYTHRALF----KHLEKDHESMALDS 747



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 9/185 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F  +I   G  P    +  ++    ++G+ K A+ ++DE   + L  + +++  LI+
Sbjct: 570 AIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIH 629

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           GH KA  L++ F+  + M+  G+RP+V T++AL++G+CK   +D+A   L +M E G++P
Sbjct: 630 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISP 689

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   +T LI  HC   +       +E  K+  EM    + PD  T+  L      E D E
Sbjct: 690 NKYSYTILISKHCDLDK------WEEVVKLYKEMLDKEIEPDGYTHRALFKHL--EKDHE 741

Query: 293 S-ALD 296
           S ALD
Sbjct: 742 SMALD 746


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 225/475 (47%), Gaps = 34/475 (7%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET----------- 52
           ++ L  Y+T++  L    M S   D  H I+ ++G+  +  ++ S++             
Sbjct: 190 KMGLFTYTTLLIQLNKLNMTSTVMDRYHQIL-REGLQPNLLIYNSVINALCKDGNVRDAE 248

Query: 53  ---RGTHLPGLVLDALMIVYVDLGF-----LDDAIQCFRLLRKHYFRIPARGCRCLIDRM 104
                    G+  D      + LG+     LD A + F  + +      A     LI+ +
Sbjct: 249 SIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGL 308

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
             +      L F  E+  +G  P+V+ F   +  LC  G+I+DA  +F +  K+G     
Sbjct: 309 CNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNV 368

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
            ++ +LI+G  +   +  G  L   M   G+ P+  TY+AL+N L +   +D A ++ + 
Sbjct: 369 YTYTSLISGQ-RVSRMAIG--LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNM 425

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M + G  PN   +  LI G+C        GD ++A  ++  M      P  +TY I++ G
Sbjct: 426 MGKHGCLPNTSSYNELIRGYCT------IGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKG 479

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
           +C  GD + A+ + + M   G + D  ++T LISGFC+  K+  A  M  EM+  GL P+
Sbjct: 480 YCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPN 539

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           + TYT +I  +CK+       R+L+ M+  G  P V+TYN L++GL K      A  L  
Sbjct: 540 EVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 599

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGN-P---EDFDKLQSEKGLVSDYACYTSLVS 455
            ML+  + PD +TY+ ++ G C +G  P   E F+K+  + G + +   Y+SL+ 
Sbjct: 600 VMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKM-VKHGCLPNLHTYSSLIQ 653



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 182/377 (48%), Gaps = 18/377 (4%)

Query: 52  TRGTHLPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR----CLIDRMMR 106
           TR   LP +    A ++   D+G ++DA + F  ++K       +GC+         +  
Sbjct: 325 TRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKK-------KGCKPNVYTYTSLISG 377

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
             +  + +G +  +   G  P+   +N LM+ L +  +I  A +VF+  GK G      S
Sbjct: 378 QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSS 437

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           +N LI G+C   + ++   + + M      P + TY+ +I G C     D A  +L  M 
Sbjct: 438 YNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMK 497

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
             G  P++  +T LI G CK  ++++A  M       +EM   GL P+++TYT L+ G+C
Sbjct: 498 ANGCQPDEWSYTELISGFCKISKMELASGM------FNEMMDRGLCPNEVTYTALISGYC 551

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K+  L+ A  + + M + G   +   +  LI G  +      AE + + ML+  + PD  
Sbjct: 552 KDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVV 611

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           TY+ VI+  C NG       +  +M   G LP + TY++L+  L + G+++ A  +   +
Sbjct: 612 TYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSEL 671

Query: 407 LDLGVVPDDITYNILLE 423
              G++PD++TY  ++E
Sbjct: 672 KKQGLIPDEVTYVKMIE 688



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 160/390 (41%), Gaps = 92/390 (23%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  + +  L+   CK  K++ A  +F+E   RGL    V++  LI+G+CK + LD  
Sbjct: 500 GCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCA 559

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            R+   M+ SG RP+V TY+ LI+GL K+N    AE L   M E  ++P+ V ++T+I+G
Sbjct: 560 ARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVING 619

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
            C NG I +A                             G ++EA ++  E+   GL PD
Sbjct: 620 LCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPD 679

Query: 275 KITYTILLDGFCKEGDLESALD-----------------------IRKEMI-KRGIELDN 310
           ++TY  +++     G ++ A D                       ++ EM+  + + L N
Sbjct: 680 EVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPN 739

Query: 311 VAFT---------------------------------ALISGFCRGGKVVEAERMLREML 337
            A T                                 AL+S   R G+  EA  + R M+
Sbjct: 740 AASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMV 799

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM---RSDGHLPAVETYNALMNGLCKHG 394
                P+  TY   +    +         + K M   R + HL     Y  L+  LC+  
Sbjct: 800 SQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTG---YKELICTLCQLH 856

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + K A  + + ML   +  D+I + IL+ G
Sbjct: 857 RRKEARFVFEKMLSRALNADEIVWTILING 886



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 3/205 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            +M +A   +D     G      TYT LL    K     + +D   ++++ G++ + + +
Sbjct: 172 AEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIY 231

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
            ++I+  C+ G V +AE ++ ++ K G+KPD  TYT +I  +C+N D  + F +   M  
Sbjct: 232 NSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDE 291

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           +G  P   TY+ L+NGLC  G++  A   +  M   GV+P   T+   +   C  G  ED
Sbjct: 292 EGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIED 351

Query: 434 FDKL---QSEKGLVSDYACYTSLVS 455
             K+     +KG   +   YTSL+S
Sbjct: 352 AWKIFIDMKKKGCKPNVYTYTSLIS 376



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 123/290 (42%), Gaps = 28/290 (9%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           + L  + +++ +G  P+++ ++ L+  L +EG++++A+ +F E  K+GL    V++  +I
Sbjct: 628 LALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMI 687

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE---------------NRLD 216
                +  +D  F     M  +G +P + TY  LI GL  E               +  D
Sbjct: 688 EVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFD 747

Query: 217 DA-------ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           D         +L  ++ E     +  ++  L+       R+  +G   EA  +   M + 
Sbjct: 748 DQIINKDVISVLSSKLAELDFELSRQLYDALL------SRLSRSGRWFEANNLYRSMVSQ 801

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P++ TY   L    +   ++ A+D+ K M  +  EL    +  LI   C+  +  EA
Sbjct: 802 SQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEA 861

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
             +  +ML   L  D+  +T++I+     G        L  M ++   P+
Sbjct: 862 RFVFEKMLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIMETNRRNPS 911



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 8/175 (4%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L   L  LD+  S  +Y  + L+ +L + G+  +A  ++     +       ++   +  
Sbjct: 759 LSSKLAELDFELSRQLY--DALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLIS 816

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
             +A  +D    +   M        +  Y  LI  LC+ +R  +A  +  +M  R L  +
Sbjct: 817 LLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNAD 876

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           ++++T LI+G    G  D+  +       +  M TN  NP     TIL     KE
Sbjct: 877 EIVWTILINGLLGAGYKDLCME------FLHIMETNRRNPSSHARTILAREALKE 925


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 171/309 (55%), Gaps = 7/309 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           YG  PS+   N L+  L K G+   A +V+D+  +  +     +   ++N +CKA  ++ 
Sbjct: 25  YGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVER 84

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
                  ME  G   +  +Y++L++G      ++ A+ +L  M E+G+  N V  T LI 
Sbjct: 85  AVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIK 144

Query: 243 GHCKNGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           G+CK  +++      EA K++ EM   +G+  D+  Y  L+DG+CK G +  A+ +R EM
Sbjct: 145 GYCKQCKVE------EAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEM 198

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +K G++++     +LI+G+C+ G+V E ER+L  M K+ LKPD  +Y  ++D +C++G +
Sbjct: 199 LKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLS 258

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
              F +  +M   G  P V TYN L+ GLC+ G  K+A  L   ML  GV P+++ Y  L
Sbjct: 259 SKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTL 318

Query: 422 LEGHCKHGN 430
           L+G  K G+
Sbjct: 319 LDGLFKMGD 327



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 194/405 (47%), Gaps = 42/405 (10%)

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           ++ VY + G + +A+  F  + K+  +   R C  L+  +++       +  Y ++    
Sbjct: 2   ILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLD 61

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT--------------- 169
             P V+   ++++  CK GK++ A     E  K G    AVS+N+               
Sbjct: 62  IVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAK 121

Query: 170 --------------------LINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALING 208
                               LI G+CK   ++E  ++   ME   G+  D Y Y ALI+G
Sbjct: 122 GVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDG 181

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            CK  ++ DA  +  EM + GL  N  +  +LI+G+CKNG++       E  +++  M  
Sbjct: 182 YCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQV------HEGERLLMCMRK 235

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
             L PD  +Y  L+DG+C++G    A ++  +M+++GIE   V +  L+ G CR G   +
Sbjct: 236 LDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKD 295

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A R+   ML+ G+ P++  Y  ++D   K GD      L  ++ + G   ++  +N ++N
Sbjct: 296 ALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMIN 355

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           GLCK G++  A      M +LG  PD ITY  L +G+CK GN E+
Sbjct: 356 GLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEE 400



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 218/454 (48%), Gaps = 36/454 (7%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           + G+ S A      +  +G     +  + L+      G   DA++ + L+ +        
Sbjct: 254 RDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEV 313

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           G   L+D + +    +  L  + +IL  G + S+Y FN +++ LCK G++  A+  F   
Sbjct: 314 GYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRM 373

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + G     +++ TL +G+CK  N++E F++K  ME   + P +  Y++LI GL    ++
Sbjct: 374 EELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKI 433

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID-------------MAGDMKEARKI 262
                LL EM  RGL+PN V +  LI G C  GR+D              A ++    KI
Sbjct: 434 SKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKI 493

Query: 263 VDEMC-------TNGLNPDKITYTILLDGFCKEGDLESALDIRK-EMIKRGIELD----- 309
           V  +         N L    + + ++LD  C E D ++A DIRK +  K    LD     
Sbjct: 494 VSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLE-DFQNA-DIRKLDCWKIADTLDESAIK 551

Query: 310 -----NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                NV +   ++G C+ GKV +A R    +      PD+ TY  +I  F   G     
Sbjct: 552 FSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEA 611

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F L  EM + G +P + TYNAL+NGLCK G L  A  L D +   G++P+ +TYNIL++G
Sbjct: 612 FNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDG 671

Query: 425 HCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           +CK G+P +   L+    ++G+      Y+SL++
Sbjct: 672 YCKSGSPREALDLRGKMLKEGISPSIITYSSLIN 705



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y +  L+   CK GK+ DA  V DE  K GL       N+LING+CK   + EG RL   
Sbjct: 173 YAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMC 232

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M    ++PD Y+Y  L++G C++     A  +  +M  +G+ P  V + TL+ G C+   
Sbjct: 233 MRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCR--- 289

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
               GD K+A ++   M   G+ P+++ Y  LLDG  K GD   AL +  +++ RGI   
Sbjct: 290 ---FGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKS 346

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             AF  +I+G C+ G++  A+   + M ++G KPD  TY  + D +CK G+ +  F++ +
Sbjct: 347 IYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKE 406

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M  +   P++E YN+L+ GL    ++     LL  M   G+ P+ +TY  L+ G C  G
Sbjct: 407 KMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQG 466



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 98/177 (55%), Gaps = 6/177 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F+L +    ++P  + +  L+H     G + +A  + DE   +GL     ++N L+NG C
Sbjct: 579 FFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLC 638

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K+  LD   RL   +   G+ P+V TY+ LI+G CK     +A  L  +M + G++P+ +
Sbjct: 639 KSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSII 698

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
            +++LI+G CK        D++EA K+++EM  + ++    T++ L++G  + GD++
Sbjct: 699 TYSSLINGFCKQ------SDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVK 749



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 1/188 (0%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
           G +K A  + D M   G  P   +   LL    K G+  SA+ +  +M +  I  D    
Sbjct: 10  GMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTC 69

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             +++ +C+ GKV  A   +REM K+G + +  +Y  ++D +   GD +    +LK M  
Sbjct: 70  AIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSE 129

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTM-LDLGVVPDDITYNILLEGHCKHGNPE 432
            G +    T   L+ G CK  +++ A  +L  M  + GVV D+  Y  L++G+CK G   
Sbjct: 130 KGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMG 189

Query: 433 DFDKLQSE 440
           D  +++ E
Sbjct: 190 DAIRVRDE 197



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 94/179 (52%), Gaps = 4/179 (2%)

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           ++L  + ++G +++AL +   M K G +    +  +L+S   + G+   A  +  +M ++
Sbjct: 1   MILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRL 60

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            + PD  T  ++++ +CK G  +     ++EM   G      +YN+L++G    G ++ A
Sbjct: 61  DIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGA 120

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK----LQSEKGLVSDYACYTSLV 454
             +L  M + GV+ + +T  +L++G+CK    E+ +K    ++ E G+V D   Y +L+
Sbjct: 121 KGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALI 179



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 55/118 (46%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G+LD A + F  L              LID   ++  P   L    ++L  G SPS+  +
Sbjct: 641 GYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITY 700

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           + L++  CK+  +++A  + +E     +  T  +F+ L+ G  +  ++ +  +L ++M
Sbjct: 701 SSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKKMSKLHNMM 758


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 217/455 (47%), Gaps = 61/455 (13%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           T+ +  TM+H LV+  M+ +A DLL HLI    G     ++F  I ET   H    VL+ 
Sbjct: 96  TVESVCTMIHILVSGNMNHKAMDLLLHLISYNSGEEGWHNIFLKIHET---HTKRRVLET 152

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
              VY   G L   + C+                      ++ N+  V L    ++    
Sbjct: 153 ---VY---GML---VNCY----------------------VKENMTQVALKLICKMRHLN 181

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P + V N L+  L +  ++  A     E   +GL   A   +  I+G+C   N+D G+
Sbjct: 182 IFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGNIDTGW 241

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +L   M+  G++PDV  Y+ +I+ LCK + L +A  +L +M + G+  + V  ++++DG+
Sbjct: 242 KLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGY 301

Query: 245 CKNGRIDMA--------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
           CK G+ + A                          G+M +A K+  +MC  GL PD  +Y
Sbjct: 302 CKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSY 361

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T ++ G+CK  D+ +AL    +M+KRGI      +T LI   C+ G +  AE + + M+ 
Sbjct: 362 TTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMIT 421

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
            GL PD  +Y  +++ + K G  +  F LL  MRS G  P + TYN L++GL K G +  
Sbjct: 422 EGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNE 481

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           A  +LD +   G  PD +T+  ++ G    GN E+
Sbjct: 482 AKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEE 516



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 165/305 (54%), Gaps = 6/305 (1%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +  SP+++VFN  + KLC +G +  A  VF +  + GL     S+ T++ G+CK K++  
Sbjct: 317 FNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISN 376

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +    M   G+RP V TY+ LI+  CK   ++ AE L   M   GL P+ V + TL++
Sbjct: 377 ALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMN 436

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+ K G       +++A +++  M + G++PD +TY IL+ G  K G +  A DI  E+ 
Sbjct: 437 GYGKKGH------LQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELT 490

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +RG   D V FT +I GF   G   EA  +   M +  L+PD  T + +++ +C+     
Sbjct: 491 RRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMA 550

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L  +M   G    V  YN+L++G C  G + +A  L+  M++ G++P++IT++ L+
Sbjct: 551 EANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALV 610

Query: 423 EGHCK 427
            G+ K
Sbjct: 611 LGYEK 615



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%)

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y +L++ + KE   + AL +  +M    I        +L+       ++  A   L+EM
Sbjct: 153 VYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEM 212

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              GL  + +  ++ I  +C  G+  TG++LL EM+  G  P V  Y  +++ LCK   L
Sbjct: 213 KSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLL 272

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSK 456
           K A  +L  M  +GV  D ++ + +++G+CK G  E+   +     L  +   + S +SK
Sbjct: 273 KEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISK 332



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L FY+   ++   P V   + L++  C+   + +A ++F +    GL A  + +N+LI+G
Sbjct: 520 LFFYMS--EHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHG 577

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL---CKENRLDDAELLLHEM 225
            C   N+D+   L S+M   G+ P+  T+ AL+ G    C EN ++ A   L ++
Sbjct: 578 FCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEKKCVENPVERAAFKLQQL 632



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
           +  Y M+++C+ K   T+   +L+ +MR     P +   N+L+  L +  QL  A   L 
Sbjct: 151 ETVYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLK 210

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
            M   G+  +    ++ + G+C  GN +   KL  E    G+  D   YT ++    K
Sbjct: 211 EMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCK 268


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 179/354 (50%), Gaps = 13/354 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    T     + E++  G SP ++ +N L+H LC   + K    + +E     
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK 266

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    VSFNT+++  CK   + E   +   M   G+ P+V TY+AL++G C  + +D+A 
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG-------------DMKEARKIVDEM 266
            +   M  +G  PN + + TLI+G+CK  RID A              +M EA K+ D M
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTM 386

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G  P+ I+Y  L++G+CK   ++ A+ +  EM ++ +  D V ++ LI G C   ++
Sbjct: 387 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 446

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            +A  +  EM+     P+  TY +++D  CKN        LLK +      P ++  N  
Sbjct: 447 QDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIA 506

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           ++G+C+ G+L+ A  L   +   G+ PD  TY+I++ G C+ G  ++  KL  E
Sbjct: 507 IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFRE 560



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 170/354 (48%), Gaps = 28/354 (7%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P++Y  ++L++  C   ++  A  V  +  K G      +F TLI G C    + E
Sbjct: 90  FGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGE 149

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L   M G G RPDV TY  LINGLCK      A  LL  M ++   PN   + T+ID
Sbjct: 150 ALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIID 209

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CK+ ++       EA  +  EM T G++PD  TY  L+   C   + +    +  EM+
Sbjct: 210 SLCKDRQV------TEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV 263

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
              I  D V+F  ++   C+ GKV EA  ++ +M++ G++P+  TYT ++D  C   +  
Sbjct: 264 DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMD 323

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA--------------NM-----LL 403
              ++   M   G +P V +YN L+NG CK  ++  A              NM     + 
Sbjct: 324 EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVF 383

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           DTM+  G +P+ I+YN L+ G+CK    +    L  E   + L+ D   Y++L+
Sbjct: 384 DTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 437



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 167/346 (48%), Gaps = 25/346 (7%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+     N          +IL  G+ P    F  L+  +C EGKI +A  +FD+    G
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEG 161

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++ TLING CK  N     RL   M     +P+V+ Y+ +I+ LCK+ ++ +A 
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L  EM  +G++P+   + +LI   C         + K    +++EM  + + PD +++ 
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCN------LCEWKHVATLLNEMVDSKIMPDVVSFN 275

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++D  CKEG +  A D+  +MI+RG+E + V +TAL+ G C   ++ EA ++   M+  
Sbjct: 276 TVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCK 335

Query: 340 GLKPDDATYTMVIDCFCKNG-------------------DTKTGFRLLKEMRSDGHLPAV 380
           G  P+  +Y  +I+ +CK                     +     ++   M   G +P V
Sbjct: 336 GCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNV 395

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            +YN L+NG CK  ++  A  L   M    ++PD +TY+ L+ G C
Sbjct: 396 ISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 441



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 169/358 (47%), Gaps = 28/358 (7%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++D    P V  FN ++  LCKEGK+ +A  V D+  +RG+    V++  L++GHC   
Sbjct: 261 EMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLS 320

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR-------------------LDDAE 219
            +DE  ++   M   G  P+V +Y+ LING CK  R                   +D+A 
Sbjct: 321 EMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAV 380

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  PN + + TLI+G+CK  RID      +A  +  EMC   L PD +TY+
Sbjct: 381 KVFDTMVCKGCMPNVISYNTLINGYCKIQRID------KAMYLFGEMCRQELIPDTVTYS 434

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C    L+ A+ +  EM+      + V +  L+   C+   + EA  +L+ +   
Sbjct: 435 TLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGS 494

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L PD     + ID  C+ G+ +    L   + S G  P V TY+ ++NGLC+ G L  A
Sbjct: 495 NLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEA 554

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + L   M + G   +   YN +  G  ++       +L  E   +G  +D +  T  V
Sbjct: 555 SKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFV 612



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 176/351 (50%), Gaps = 28/351 (7%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V+ +N ++  LCK+ ++ +A  +F E   +G+     ++N+LI+  C          L
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M  S + PDV +++ +++ LCKE ++ +A  ++ +M +RG+ PN V +T L+DGHC 
Sbjct: 259 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHC- 317

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG----------------- 289
                +  +M EA K+ D M   G  P+ I+Y  L++G+CK                   
Sbjct: 318 -----LLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCC 372

Query: 290 --DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
             +++ A+ +   M+ +G   + +++  LI+G+C+  ++ +A  +  EM +  L PD  T
Sbjct: 373 YLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVT 432

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y+ +I   C     +    L  EM +   +P + TY  L++ LCK+  L  A  LL  + 
Sbjct: 433 YSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIE 492

Query: 408 DLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
              + PD    NI ++G C+ G  E   D     S KGL  D   Y+ +++
Sbjct: 493 GSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMIN 543



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 156/304 (51%), Gaps = 11/304 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V FN L+    K K+      L   M+  G+ P++YT   LIN  C  NR+  A  +L
Sbjct: 60  STVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVL 119

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            ++ + G  P+   FTTLI G C  G+I       EA  + D+M   G  PD +TY  L+
Sbjct: 120 AKILKLGHQPDTATFTTLIRGICVEGKIG------EALHLFDKMIGEGFRPDVVTYGTLI 173

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G CK G+  +A+ +   M+++  + +  A+  +I   C+  +V EA  +  EM+  G+ 
Sbjct: 174 NGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGIS 233

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  TY  +I   C   + K    LL EM     +P V ++N +++ LCK G++  A+ +
Sbjct: 234 PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDV 293

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSS 458
           +D M+  GV P+ +TY  L++GHC     ++    FD +   KG + +   Y +L++   
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC-KGCMPNVISYNTLINGYC 352

Query: 459 KYRQ 462
           K ++
Sbjct: 353 KIQR 356



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 21/307 (6%)

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           F        H+ ++ FNT I+G   + N     R++         P    ++ L+  + K
Sbjct: 24  FLSLSHNRFHSKSLHFNT-IDGAISSFN--RMLRMQP-------PPSTVDFNKLLTSIAK 73

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
                    L H+M   G+ PN      LI+  C   R+        A  ++ ++   G 
Sbjct: 74  MKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGF------AFSVLAKILKLGH 127

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            PD  T+T L+ G C EG +  AL +  +MI  G   D V +  LI+G C+ G    A R
Sbjct: 128 QPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 187

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +L  M++   +P+   Y  +ID  CK+      F L  EM + G  P + TYN+L++ LC
Sbjct: 188 LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALC 247

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDY 447
              + K+   LL+ M+D  ++PD +++N +++  CK G   +     DK+  ++G+  + 
Sbjct: 248 NLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKM-IQRGVEPNV 306

Query: 448 ACYTSLV 454
             YT+L+
Sbjct: 307 VTYTALM 313



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 120/302 (39%), Gaps = 87/302 (28%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIK-------------------DAQMVFDEFGKRGLHATA 164
           G  P+V  +N L++  CK  +I                    +A  VFD    +G     
Sbjct: 336 GCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNV 395

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           +S+NTLING+CK + +D+   L   M    + PD  TYS LI+GLC   RL DA  L HE
Sbjct: 396 ISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHE 455

Query: 225 MCERGLTPNDVIFTTLIDGHCKN---------------GRID--------------MAGD 255
           M      PN V +  L+D  CKN                 +D               AG+
Sbjct: 456 MVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGE 515

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA--------------------- 294
           ++ AR +   + + GL PD  TY+I+++G C+ G L+ A                     
Sbjct: 516 LEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT 575

Query: 295 --------------LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
                         + + +EM+ RG   D    T  +      G     ++ L+++L+ G
Sbjct: 576 ITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDG----LDQSLKQILRNG 631

Query: 341 LK 342
            K
Sbjct: 632 CK 633



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 6/203 (2%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +  + E++     P++  + +L+  LCK   + +A  +        L       N  I+G
Sbjct: 450 IALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDG 509

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+A  L+    L S +   G++PDV+TYS +INGLC+   LD+A  L  EM E G T N
Sbjct: 510 MCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 569

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
             I+ T+  G  +N       +   A +++ EM   G + D  T T+ +     +G  +S
Sbjct: 570 GCIYNTITRGFLRN------NETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQS 623

Query: 294 ALDIRKEMIKRGIELDNVAFTAL 316
              I +   K     D+ + T L
Sbjct: 624 LKQILRNGCKWISTFDSSSSTGL 646



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
              ML++   P    +  ++    K     T   L  +M S G  P + T + L+N  C 
Sbjct: 49  FNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCH 108

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYA 448
             ++  A  +L  +L LG  PD  T+  L+ G C  G   +    FDK+  E G   D  
Sbjct: 109 LNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGE-GFRPDVV 167

Query: 449 CYTSLVS 455
            Y +L++
Sbjct: 168 TYGTLIN 174



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 19/202 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            YST++H L   +    A  L H +V+                   + +P LV   +++ 
Sbjct: 432 TYSTLIHGLCHVERLQDAIALFHEMVA------------------CSQIPNLVTYRILLD 473

Query: 69  YVDLG-FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           Y+    +L +A+   + +         +     ID M R          +  +   G  P
Sbjct: 474 YLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQP 533

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            V+ ++++++ LC+ G + +A  +F E  + G       +NT+  G  +        +L 
Sbjct: 534 DVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLL 593

Query: 188 SVMEGSGMRPDVYTYSALINGL 209
             M   G   D  T +  +  L
Sbjct: 594 QEMVARGFSADASTMTLFVKML 615


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 217/430 (50%), Gaps = 16/430 (3%)

Query: 4   RLTLHAYSTMVHFLVAHKMHSQARDLL-HLIVSKKGMGSSASLFASILETRGTHLPG--L 60
           R+T + Y   V  L+  +MHSQA  +L HL V+  G   +A +F S+L T     P   +
Sbjct: 102 RIT-YVYCMAVPILIQAQMHSQAMSVLKHLAVT--GFSCTA-IFTSLLRTISRFDPTNHV 157

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           V + L+  YV    + DA      +    F+     C  +++ ++          F  E 
Sbjct: 158 VFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNTILNALVEEGESKHVWLFLRES 217

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH-ATAVSFNTLINGHCKAKN 179
           L   +   V   N+L++ LC  G+ + A+ +  +   +  H + +V++NT+++ + K   
Sbjct: 218 LARKFPLGVTTCNILLNSLCTNGEFRKAEDMLQKM--KSCHISNSVTYNTILHWYVKKGR 275

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
                 +   ME   ++ DVYTY+ +I+ LC+  R   A LLL  M +  LTP++  + T
Sbjct: 276 FKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNT 335

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI+G  + G+I+       AR + + M    L P   TYT ++DG+C+   ++ AL I  
Sbjct: 336 LINGFFREGKIN------HARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILS 389

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM   G+    + ++AL++G+C+   +  A  ++ ++   G+  +    T++ID FC+ G
Sbjct: 390 EMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVG 449

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +     ++LK M  DG  P V TY+AL+NG+C+  ++     +L  M   G++P+D+ Y 
Sbjct: 450 EISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYT 509

Query: 420 ILLEGHCKHG 429
            L+  +CK G
Sbjct: 510 TLICYYCKAG 519



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 191/394 (48%), Gaps = 44/394 (11%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID++ R    T        +     +P    +N L++   +EGKI  A+ VF+   ++ 
Sbjct: 301 MIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQN 360

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L  +  ++ T+I+G+C+ + +D+   + S M+ +G+ P   TYSAL+NG CK + L  A 
Sbjct: 361 LVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAI 420

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ ++  RG+T N  + T LIDG C+       G++ +A++I+  M  +G++PD ITY+
Sbjct: 421 YLMEDLKSRGITINKTMRTILIDGFCQ------VGEISKAKQILKSMFEDGIDPDVITYS 474

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV------------- 326
            L++G C+   +    +I   M K GI  ++V +T LI  +C+ G V             
Sbjct: 475 ALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRR 534

Query: 327 ----------------------VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
                                  EAE   + M ++ +  D  ++  +ID +C  G+    
Sbjct: 535 GLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGA 594

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           F +  +M   G+ P V TY  L+ GLC+ G L  A   +  +LD+    D+ T+N LL G
Sbjct: 595 FSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLG 654

Query: 425 HCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
            C++G  +   D  +   +   + D   YT L+S
Sbjct: 655 ICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLS 688



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 176/315 (55%), Gaps = 7/315 (2%)

Query: 120  ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAK 178
            +L+ G  P    +  L++ L  EG++K A  VF E   K GL+A  +++N+L+NG+ K++
Sbjct: 706  MLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSR 765

Query: 179  NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            N++   R+ S M  + + P+  +Y+ L++G  K  +   +  L   M  +G+ P++V + 
Sbjct: 766  NVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYR 825

Query: 239  TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
             LI G  + G ID+A       K +++M   G+ PD++ + IL+  F ++  + +AL + 
Sbjct: 826  LLILGLSECGLIDIAV------KFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVF 879

Query: 299  KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
              M    +   +  F+A+I+G  R G +  + ++L EML+VGL+P+   Y  +++  C+ 
Sbjct: 880  NCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRV 939

Query: 359  GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
            G+    FRL +EM++ G +PA    ++++ GLC+ G+L+ A ++  +M+  G+VP   T+
Sbjct: 940  GEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATF 999

Query: 419  NILLEGHCKHGNPED 433
              L+   CK     D
Sbjct: 1000 TTLMHSLCKESKIAD 1014



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 185/396 (46%), Gaps = 33/396 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID   R       L    E+   G  PS   ++ L++  CK   +  A  + ++   RG
Sbjct: 371 MIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRG 430

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +         LI+G C+   + +  ++   M   G+ PDV TYSALING+C+  ++ + +
Sbjct: 431 ITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETK 490

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-------------------------- 253
            +L  M + G+ PNDV++TTLI  +CK G +  A                          
Sbjct: 491 EILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAF 550

Query: 254 ---GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
              G + EA      M    ++ D +++  ++D +C  G++  A  +  +M++ G   + 
Sbjct: 551 YREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNV 610

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
             +  L+ G C+GG +V+A + +  +L +    D+ T+  ++   C+ G       L ++
Sbjct: 611 CTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEK 670

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M  +  LP + TY  L++G C+ G++  A ++L  ML+ GVVPD + Y  LL G    G 
Sbjct: 671 MIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQ 730

Query: 431 PED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            +     F ++  ++GL +D   Y SL++   K R 
Sbjct: 731 VKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRN 766



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 171/358 (47%), Gaps = 30/358 (8%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
               Y +++ YGYSP+V  +  L+  LC+ G +  A+                +FN L+ 
Sbjct: 594 AFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLL 653

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+   LDE   L   M  +   PD++TY+ L++G C++ ++  A ++L  M E+G+ P
Sbjct: 654 GICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVP 713

Query: 233 NDVIFTTLIDGHCKNGRIDMAG------------------------------DMKEARKI 262
           + V +T L++G    G++  A                               ++   +++
Sbjct: 714 DTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRM 773

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
           + +M  N + P+  +Y IL+ G+ K G    +L + K M+++GI  DNV +  LI G   
Sbjct: 774 MSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSE 833

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            G +  A + L +M+  G+ PD   + ++I  F +        ++   M+     P+ +T
Sbjct: 834 CGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKT 893

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           ++A++NGL + G L +++ +L  ML +G+ P+   Y  L+   C+ G  +   +L+ E
Sbjct: 894 FSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEE 951



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 6/301 (1%)

Query: 113  TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +L  Y  ++  G  P    + +L+  L + G I  A    ++    G+    + F+ LI 
Sbjct: 805  SLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILIT 864

Query: 173  GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
               +   +    ++ + M+   M P   T+SA+INGL ++  LD +  +LHEM + GL P
Sbjct: 865  AFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQP 924

Query: 233  NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
            N   +  L++  C+ G ID A  +KE      EM   G+ P ++  + ++ G C+ G LE
Sbjct: 925  NHTHYIALVNAKCRVGEIDRAFRLKE------EMKAIGIVPAEVAESSIIRGLCRCGKLE 978

Query: 293  SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             A+ +   M++ G+      FT L+   C+  K+ +A  + R M    L+ D  +Y ++I
Sbjct: 979  EAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLI 1038

Query: 353  DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
               CK+        L  EM+S G  P + TY  L   +   G+++N   LL+ + + G++
Sbjct: 1039 TGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERGLI 1098

Query: 413  P 413
            P
Sbjct: 1099 P 1099



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 178/390 (45%), Gaps = 25/390 (6%)

Query: 9    AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSA----SLFASILETRGTHLPGLVL-- 62
            AY+ +++ L+       A  + H I+ K+G+ +      SL    L++R  +    ++  
Sbjct: 717  AYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSD 776

Query: 63   -------------DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
                         + LM  YV  G    ++  ++ + +   R      R LI  +    L
Sbjct: 777  MYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGL 836

Query: 110  PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
              + + F  +++  G  P   VF++L+    ++ K+ +A  VF+      +  ++ +F+ 
Sbjct: 837  IDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSA 896

Query: 170  LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
            +ING  +   LD   ++   M   G++P+   Y AL+N  C+   +D A  L  EM   G
Sbjct: 897  MINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIG 956

Query: 230  LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
            + P +V  +++I G C+ G+++      EA  +   M  +G+ P   T+T L+   CKE 
Sbjct: 957  IVPAEVAESSIIRGLCRCGKLE------EAVIVFSSMMRSGMVPTVATFTTLMHSLCKES 1010

Query: 290  DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
             +  AL +++ M    + +D V++  LI+G C+   + +A  +  EM   GL P+  TY 
Sbjct: 1011 KIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYI 1070

Query: 350  MVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
             +       G  + G  LL+++   G +PA
Sbjct: 1071 TLTGAMYSTGRVQNGEELLEDIEERGLIPA 1100


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 200/408 (49%), Gaps = 26/408 (6%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G   S       ++ +G H    +  +++ VY  +G  + A++ F       +RI   GC
Sbjct: 90  GQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMF-------YRIKEFGC 142

Query: 98  -------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
                    ++D ++  N   +    Y ++   G+ P+V+ +NVL+  LCK  K+  A+ 
Sbjct: 143 DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKK 202

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +  E   +G    AVS+ T+I+  C+   + EG  L    E     P V  Y+ALINGLC
Sbjct: 203 LLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFE-----PVVSVYNALINGLC 257

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           KE+    A  L+ EM E+G++PN + ++TLI+  C +G+I++A         + +M   G
Sbjct: 258 KEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSF------LTQMLKRG 311

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEA 329
            +P+  T + L+ G    G    ALD+  +MI+  G++ + VA+  L+ GFC  G +V+A
Sbjct: 312 CHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKA 371

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +   M ++G  P+  TY  +I+ F K G       +  +M + G  P V  Y  ++  
Sbjct: 372 VSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEA 431

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           LC+H + K A  L++ M      P   T+N  ++G C  G  +  +K+
Sbjct: 432 LCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKV 479



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 152/307 (49%), Gaps = 11/307 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I  +G  P+V  +N L+   C  G I  A  VF    + G      ++ +LING  K  +
Sbjct: 343 IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGS 402

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD    + + M  SG  P+V  Y+ ++  LC+ ++  +AE L+  M +    P+   F  
Sbjct: 403 LDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNA 462

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            I G C  GR+D       A K+  +M   +   P+ +TY  LLDG  K   +E A  + 
Sbjct: 463 FIKGLCDAGRLDW------AEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLT 516

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +E+  RG+E  +  +  L+ G C  G    A +++ +M+  G  PD+ T  M+I  +CK 
Sbjct: 517 REIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQ 576

Query: 359 GDTKTGFRLLKEMRSDGH---LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           G  +   ++L ++ S G     P V +Y  ++ GLC+    ++  +LL+ M+  G+VP  
Sbjct: 577 GKAERAAQML-DLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSI 635

Query: 416 ITYNILL 422
            T+++L+
Sbjct: 636 ATWSVLI 642



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 8/316 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING-HCKA 177
           E+++ G SP+V  ++ L++ LC  G+I+ A     +  KRG H    + ++L+ G   + 
Sbjct: 271 EMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRG 330

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
              D       ++ G G++P+V  Y+ L+ G C    +  A  +   M E G +PN   +
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTY 390

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            +LI+G  K G +D       A  I ++M T+G  P+ + YT +++  C+    + A  +
Sbjct: 391 GSLINGFAKRGSLD------GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESL 444

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-GLKPDDATYTMVIDCFC 356
            + M K         F A I G C  G++  AE++ R+M +     P+  TY  ++D   
Sbjct: 445 IEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLA 504

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K    +  + L +E+   G   +  TYN L++G C  G    A  L+  M+  G  PD+I
Sbjct: 505 KANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEI 564

Query: 417 TYNILLEGHCKHGNPE 432
           T N+++  +CK G  E
Sbjct: 565 TMNMIILAYCKQGKAE 580



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 9/243 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + ++L  G  P+V V+  ++  LC+  K K+A+ + +   K     +  +FN  I G C
Sbjct: 409 IWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 468

Query: 176 KAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            A  LD   ++   ME      P++ TY+ L++GL K NR+++A  L  E+  RG+  + 
Sbjct: 469 DAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSS 528

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             + TL+ G C       AG    A ++V +M  +G +PD+IT  +++  +CK+G  E A
Sbjct: 529 STYNTLLHGSCN------AGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERA 582

Query: 295 LDIRKEMI--KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
             +   +   +R    D +++T +I G CR     +   +L  M+  G+ P  AT++++I
Sbjct: 583 AQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLI 642

Query: 353 DCF 355
           +CF
Sbjct: 643 NCF 645



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 22/238 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+ MV  L  H    +A  L+  I+SK+    S   F + ++       GL        
Sbjct: 424 VYTNMVEALCRHSKFKEAESLIE-IMSKENCAPSVPTFNAFIK-------GLC------- 468

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRC--LIDRMMRTNLPTVTLGFYLEILDYGYS 126
             D G LD A + FR + + + R P        L+D + + N      G   EI   G  
Sbjct: 469 --DAGRLDWAEKVFRQMEQQH-RCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 525

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            S   +N L+H  C  G    A  +  +    G     ++ N +I  +CK    +   ++
Sbjct: 526 WSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQM 585

Query: 187 KSVMEGS--GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             ++       RPDV +Y+ +I GLC+ N  +D  +LL  M   G+ P+   ++ LI+
Sbjct: 586 LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLIN 643



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 73/154 (47%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +T+ +++     +G ++S   + ++M  +G       F ++IS + + G    A  M   
Sbjct: 77  LTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYR 136

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           + + G  P    Y  V+D        +  + + ++M+ DG  P V TYN L+  LCK+ +
Sbjct: 137 IKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNK 196

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +  A  LL  M + G  PD ++Y  ++   C+ G
Sbjct: 197 VDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVG 230


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 23/397 (5%)

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEIL 121
           + ++G +D+A++ F       F++   GC         L+         T  L F+ E++
Sbjct: 270 FCEVGKIDEALELF-------FQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMV 322

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G  P+VY + VL+   CK GK+ +   +     ++GL ++ V FN LI+G+CK   ++
Sbjct: 323 ENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMME 382

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   +   M+ + + P+  TY+ LI G C++  +D A  LL++M E  L+PN V + TLI
Sbjct: 383 DAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLI 442

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G CK   +D A  +         M  +G  PD+ T+   +D  CK G +E A  + + +
Sbjct: 443 HGLCKARVVDSAWRLHHL------MIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESL 496

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            ++  E +   +TALI G+C+  K  +A  + + ML  G  P+  T+ +++D   K G  
Sbjct: 497 KEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKV 556

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L+  M      P V TY  L+  + +      ANM LD M+  G  P+ +TY   
Sbjct: 557 EDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAF 616

Query: 422 LEGHCKHG---NPEDFDKLQSEKGLVSDYACYTSLVS 455
           ++ +C+ G     E+      E+G++ D   Y  LV+
Sbjct: 617 IKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVN 653



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 186/375 (49%), Gaps = 11/375 (2%)

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           LL  H F +       L   + R  L       + ++L+ G  P++  FN +++  CK G
Sbjct: 145 LLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIG 204

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
            +  A+  F    K G    + ++ +LI G+CK   L + +++  +M   G   +  +Y+
Sbjct: 205 NVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYT 264

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+G C+  ++D+A  L  +M E G  P+   +T L+   C+       G   EA K  
Sbjct: 265 NLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCE------VGKETEALKFF 318

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           +EM  NG+ P+  TYT+L+D FCK G ++  +++   M+++G+    V F ALI G+C+ 
Sbjct: 319 EEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKR 378

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G + +A  +L  M    + P+  TY  +I  FC+         LL +M  +   P + TY
Sbjct: 379 GMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTY 438

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQS 439
           N L++GLCK   + +A  L   M+  G VPD  T+   ++  CK G  E     F+ L+ 
Sbjct: 439 NTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKE 498

Query: 440 EKGLVSDYACYTSLV 454
           +    +++  YT+L+
Sbjct: 499 KHAEANEFL-YTALI 512



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 181/382 (47%), Gaps = 27/382 (7%)

Query: 64  ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP---------TVTL 114
           +L++ Y  +  L DA + F ++       P  GC  L + +  TNL             L
Sbjct: 230 SLILGYCKIHELGDAYKVFEIM-------PQEGC--LRNEVSYTNLIHGFCEVGKIDEAL 280

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
             + ++ + G  P V  + VL+   C+ GK  +A   F+E  + G+     ++  LI+  
Sbjct: 281 ELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYF 340

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK   +DEG  + S M   G+   V  ++ALI+G CK   ++DA  +L  M    + PN 
Sbjct: 341 CKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNS 400

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             +  LI G C+   +D       A  ++++M  N L+P+ +TY  L+ G CK   ++SA
Sbjct: 401 RTYNELICGFCRKKSMD------RAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSA 454

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
             +   MIK G   D   F A I   C+ GKV +A ++   + +   + ++  YT +ID 
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDG 514

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +CK         L K M  +G  P   T+N L++GL K G++++A  L+D M      P 
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPT 574

Query: 415 DITYNILLEGHCKHGNPEDFDK 436
             TY IL+E   +     DFD+
Sbjct: 575 VHTYTILIEEILRES---DFDR 593



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 167/336 (49%), Gaps = 24/336 (7%)

Query: 110 PTVTLGFYLEI-LDYGYSPSVYVFNVLMHKLCKEGKIK-----------------DAQMV 151
           P   L F+  I   +G+  +V+ +  L+  L + G ++                 +A+ V
Sbjct: 83  PLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFV 142

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
            +         +  S+N L     +   +DE   L   M   G+ P++ +++ ++N  CK
Sbjct: 143 LNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCK 202

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
              +  A+     + + G   +   +T+LI G+CK   I   GD   A K+ + M   G 
Sbjct: 203 IGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCK---IHELGD---AYKVFEIMPQEGC 256

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
             ++++YT L+ GFC+ G ++ AL++  +M + G   D   +T L++ FC  GK  EA +
Sbjct: 257 LRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALK 316

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
              EM++ G++P+  TYT++ID FCK G    G  +L  M   G + +V  +NAL++G C
Sbjct: 317 FFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYC 376

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           K G +++A  +LD+M    V P+  TYN L+ G C+
Sbjct: 377 KRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCR 412



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 200/459 (43%), Gaps = 49/459 (10%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
            L  Y+T++H L   ++   A  L HL++ K G       F + ++              
Sbjct: 434 NLVTYNTLIHGLCKARVVDSAWRLHHLMI-KDGFVPDQRTFCAFID-------------- 478

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
                 +G ++ A Q F  L++ +          LID   +    +     +  +L  G 
Sbjct: 479 --CLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGC 536

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+   FNVL+  L KEGK++DA  + D  GK     T  ++  LI    +  + D    
Sbjct: 537 FPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANM 596

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M  SG +P+V TY+A I   C++ RL +AE ++ ++ E G+  +  I+  L++ + 
Sbjct: 597 FLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYG 656

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL-----DGFCKEG----------- 289
             G++D       A  ++  M   G  P + TY+ILL     + + KEG           
Sbjct: 657 CIGQLD------SAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNIS 710

Query: 290 ----------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
                     D E    + ++M+++G   +   ++ LI G C+   +  A R+   M + 
Sbjct: 711 VDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKES 770

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G+ P +  +  ++   CK G  +   RLL  M    HL  +E+Y  L+ GL + G  + A
Sbjct: 771 GISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKA 830

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
             +  ++L  G   D++ + +LL+G  + G  ++  +L+
Sbjct: 831 EEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLR 869



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 100/212 (47%), Gaps = 3/212 (1%)

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +N  I       EAR +++ +  +  +    +Y  L     + G ++    + K+M+  G
Sbjct: 126 RNSMIKSCVSSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDG 185

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +E + ++F  +++  C+ G VV A+     ++K G   D  TYT +I  +CK  +    +
Sbjct: 186 VEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAY 245

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           ++ + M  +G L    +Y  L++G C+ G++  A  L   M + G  PD  TY +L+   
Sbjct: 246 KVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAF 305

Query: 426 CKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           C+ G   +   F +   E G+  +   YT L+
Sbjct: 306 CEVGKETEALKFFEEMVENGIEPNVYTYTVLI 337



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 67/140 (47%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G  P+V  ++ L+  LCK   +  A  +F+   + G+  +    N+L++  CK  
Sbjct: 731 KMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLG 790

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E  RL   M        + +Y  L+ GL ++   + AE +   +   G   ++V++ 
Sbjct: 791 MHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWK 850

Query: 239 TLIDGHCKNGRIDMAGDMKE 258
            L+DG  + G +D    +++
Sbjct: 851 VLLDGLVRKGYVDECSQLRD 870


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 7/364 (1%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           L+     +P      L+  Y   G  + A++ F  ++    +        ++  M++  +
Sbjct: 122 LKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEV 181

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             + L  Y ++L   Y+P+   F +L++ LCK GK  DA  +FDE  ++G+    + +  
Sbjct: 182 FLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTI 241

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +++G C+AK  D+  RL + M+ SG  PD  T +AL++G CK  ++D+A  LL    + G
Sbjct: 242 ILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
                  +++LIDG  +  R D      E ++   +M   G+ PD + YTIL+ GFC+ G
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYD------EVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ AL++  +M +RG+  D   + ALI GFC  G + +A  +  E+ K    P   TYT
Sbjct: 356 MVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYT 415

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           ++I   C+NG      ++  +M + G  P++ T+NAL++GLCK G+L+ A  L   M ++
Sbjct: 416 ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM-EI 474

Query: 410 GVVP 413
           G  P
Sbjct: 475 GKNP 478



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 180/387 (46%), Gaps = 9/387 (2%)

Query: 49  ILETRGTHLPGLVLDALMI--VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106
           I  TR       V   L+I  +  D GF D   +    L+    +IP      LI    +
Sbjct: 85  IWTTRRRSFRSWVTHNLVIDMLAKDDGF-DTYWKILEELKNSNIQIPPPTFSVLIAAYAK 143

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
           + +    +  + ++ D+G  P V+ +N ++H + ++     A  V+++  K   +    +
Sbjct: 144 SGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRAT 203

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           F  L+NG CK    D+  ++   M   G+ P+   Y+ +++GLC+  R DD   LL+ M 
Sbjct: 204 FVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMK 263

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
             G  P+ +    L+DG CK G+ID      EA  ++      G       Y+ L+DG  
Sbjct: 264 VSGCCPDSITCNALLDGFCKLGQID------EAFALLQLFEKEGYVLGIKGYSSLIDGLF 317

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           +    +   +  ++M K GIE D V +T LI GFC  G V  A  ML +M + GL PD  
Sbjct: 318 RAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTY 377

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            Y  +I  FC  G       L  E+  +   P   TY  L+ G+C++G L  A  + + M
Sbjct: 378 CYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM 437

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPED 433
            +LG  P  +T+N L++G CK G  E+
Sbjct: 438 ENLGCSPSIMTFNALIDGLCKAGELEE 464



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 152/356 (42%), Gaps = 44/356 (12%)

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161
           D M     P +   F++         S    N+++  L K+        + +E     + 
Sbjct: 69  DVMREQRRPELGFRFFIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQ 128

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
               +F+ LI  + K+   ++       M+  G +PDV+TY+++                
Sbjct: 129 IPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSI---------------- 172

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           LH M ++     +V    L                     + ++M     NP++ T+ IL
Sbjct: 173 LHVMVQK-----EVFLLAL--------------------AVYNQMLKLNYNPNRATFVIL 207

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           L+G CK G  + AL +  EM ++GI  + + +T ++SG C+  +  +  R+L  M   G 
Sbjct: 208 LNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGC 267

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD  T   ++D FCK G     F LL+    +G++  ++ Y++L++GL +  +      
Sbjct: 268 CPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQE 327

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
               M   G+ PD + Y IL+ G C+ G  +   +     +++GL  D  CY +L+
Sbjct: 328 WCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALI 383



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 138/304 (45%), Gaps = 22/304 (7%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LEI      P+   + +L+  +C+ G + +A+ +F++    G   + ++FN LI+G CKA
Sbjct: 400 LEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKA 459

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSA--------LINGLCKENRLDDAELLLHEMCERG 229
             L+E   L   ME  G  P ++   +          NG  + +R +DA  +L +M + G
Sbjct: 460 GELEEARHLFYKME-IGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNG 518

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGD--MKEARKIVDEMCTNGLNPDKITYTI-LLDGFC 286
            TP+  ++  L+   C+ G++ +A    +K  R +          P +   T+ L +   
Sbjct: 519 CTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSL----------PSQEDETLKLAEEHF 568

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           ++G+LE A+    EM  +    +   +T  + G C+  +  EA ++   + +  +  +  
Sbjct: 569 EKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPP 628

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           +  M+I+  CK+G+ +    +       G +      N L+  L    ++K+A  LL+ M
Sbjct: 629 SCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRM 688

Query: 407 LDLG 410
              G
Sbjct: 689 NSAG 692


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 173/323 (53%), Gaps = 9/323 (2%)

Query: 114 LGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           +GF L  E+   G  P++Y +N L+ + C+ G+ K A+++FDE   +G+    VS+N LI
Sbjct: 91  MGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILI 150

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            G C+   L +  +L   M   G+RP + T++ LI+G  K  ++ +A    ++M   GL 
Sbjct: 151 AGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLP 210

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V +  LI G C+        D+  A +   +M   GL P K+TYTIL+  F KE ++
Sbjct: 211 PSVVTYNELICGFCR------VRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEM 264

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A  +  EM K G+E+D  ++  L+   C  GK++ A ++ + M   G+KP+   Y M+
Sbjct: 265 DRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMM 324

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I  + + G +    RL+ EMR +G +P V +Y   +  LC  G+ + A  L+D M   G+
Sbjct: 325 IYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAGL 384

Query: 412 VPDDITYNILLEGHCK-HGNPED 433
              +    ILL+   + HG+ +D
Sbjct: 385 QTSETICRILLDAKARLHGSTDD 407



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 166/325 (51%), Gaps = 9/325 (2%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V     L+H  C+ G + +A+ VFD   + G+    V++  LING+    + + GF L +
Sbjct: 38  VAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFA 97

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M   G+ P++YTY+ LI   C+      A LL  EM  +G+  N V +  LI G C++ 
Sbjct: 98  EMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHS 157

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +      +K+A ++ + M   G+ P  +T+ +L+DG+ K G + +AL    +M   G+  
Sbjct: 158 K------LKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPP 211

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
             V +  LI GFCR   +  A R   +M + GL P   TYT++I  F K  +    F +L
Sbjct: 212 SVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMML 271

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            EM   G    V++Y  L++ LC  G++ +A  L  +M   GV P+ + Y++++ G+ + 
Sbjct: 272 SEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGRE 331

Query: 429 GNPEDFDKLQSE---KGLVSDYACY 450
           G+     +L  E    GL+ + A Y
Sbjct: 332 GSSYKALRLIMEMRKNGLIPNVASY 356



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
           DV   +AL++  C+   + +A  +   M   G+ PN+V +T LI+G+   G  +M     
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREM----- 91

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
               +  EM  +G+ P+  TY  L+  +C+ G+ +SA  +  EM  +G+  + V++  LI
Sbjct: 92  -GFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILI 150

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           +G CR  K+ +A ++   M + G++P   T+ ++ID + K G          +M++ G  
Sbjct: 151 AGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLP 210

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P+V TYN L+ G C+   +  A      M + G+ P  +TY IL+    K    +    +
Sbjct: 211 PSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMM 270

Query: 438 QSE---KGLVSDYACYTSLV 454
            SE    GL  D   Y  L+
Sbjct: 271 LSEMEKAGLEVDVQSYGVLL 290



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 285 FCKEGDLESALDIRKEMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343
            C   ++ SAL +     K G   LD  A TAL+   C+ G V EA R+   M ++G+ P
Sbjct: 12  LCVAAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAP 71

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
           ++ TYT +I+ +   G  + GF L  EMR DG  P + TYN L+   C+ G+ K+A +L 
Sbjct: 72  NEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLF 131

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           D M   GVV + ++YNIL+ G C+H   +D  +L
Sbjct: 132 DEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQL 165



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           L DA+Q F  +R+   R        LID   +       L F+ ++   G  PSV  +N 
Sbjct: 159 LKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNE 218

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   C+   I  A   F +  +RGL  T V++  LI    K   +D  F + S ME +G
Sbjct: 219 LICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAG 278

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           +  DV +Y  L++ LC E ++  A  L   M  +G+ PN V++  +I G+ +       G
Sbjct: 279 LEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGRE------G 332

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
              +A +++ EM  NGL P+  +Y + +   C EG  + A  +  +M   G++
Sbjct: 333 SSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAGLQ 385



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 4/217 (1%)

Query: 249 RIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           R+ +A +++ A  ++     +G    D    T L+   C+ GD+  A  +   M + G+ 
Sbjct: 11  RLCVAAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVMPRLGVA 70

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V +TALI+G+   G       +  EM + G++P+  TY  +I  +C+ G+ K+   L
Sbjct: 71  PNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLL 130

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             EM   G +  V +YN L+ GLC+H +LK+A  L + M   G+ P  +T+N+L++G+ K
Sbjct: 131 FDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGK 190

Query: 428 HG---NPEDFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
            G   N   F       GL      Y  L+    + R
Sbjct: 191 AGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVR 227


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/414 (29%), Positives = 211/414 (50%), Gaps = 12/414 (2%)

Query: 19  AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           +H   + A  L  L  SKK     A L     ET   H  G+ L+ LM  +  L   +  
Sbjct: 90  SHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFH-EGIFLN-LMKHFSKLSLHERV 147

Query: 79  IQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEIL-DYGYSPSVYVFNVLM 136
           ++ F  +R      P+ +     ++ ++ +N   +T  F L         P+  +FN+L+
Sbjct: 148 VEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLEPNTCIFNILV 207

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGL-HATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSG 194
              CK G I  A  V +E  K  + +   ++++TLING C +  L E   L + ++    
Sbjct: 208 KHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQ 267

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD  TY+ALING C   ++D A  ++  M + G  PN   ++ L++G CK GR++   
Sbjct: 268 ILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLE--- 324

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              EA+++ DEM + GL PD + YT L++ FC+ G ++ A+++ K+M +     D V F 
Sbjct: 325 ---EAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFN 381

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            ++ G CR G+  EA  ML  +   G+  + A+Y +V++  C+ G+ +   +L+  M   
Sbjct: 382 VILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGR 441

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           G LP   T N L+  LC+ G++ +A M L  +L+LG  P+  ++ +L+E  C+ 
Sbjct: 442 GVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRE 495



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 8/273 (2%)

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-PDVYTYSALINGLCKENRLDD 217
            L      FN L+  HCK  ++D  F +   M+ S +  P++ TYS LINGLC   RL +
Sbjct: 195 NLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKE 254

Query: 218 AELLLHEMCER-GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           A  L  EM  +  + P+ + +  LI+G C   ++D       A KI++ M  NG NP+  
Sbjct: 255 AIELFEEMVSKDQILPDALTYNALINGFCHGEKVD------RALKIMEFMKKNGCNPNVF 308

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            Y+ L++GFCKEG LE A ++  EM   G++ D V +T LI+ FCR G+V EA  +L++M
Sbjct: 309 NYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDM 368

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            +   + D  T+ +++   C+ G  +    +L+ +  +G      +Y  ++N LC+ G+L
Sbjct: 369 RENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGEL 428

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           + A  L+  ML  GV+P   T N LL   C+ G
Sbjct: 429 QKATQLVGLMLGRGVLPHFATSNELLVHLCEAG 461



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 156/282 (55%), Gaps = 7/282 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           P++  ++ L++ LC  G++K+A  +F+E   K  +   A+++N LING C  + +D   +
Sbjct: 234 PNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALK 293

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M+ +G  P+V+ YSAL+NG CKE RL++A+ +  EM   GL P+ V +TTLI+  C
Sbjct: 294 IMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFC 353

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + GR+D      EA +++ +M  N    D +T+ ++L G C+EG  E A  + + +   G
Sbjct: 354 RAGRVD------EAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEG 407

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           + L+  ++  +++  CR G++ +A +++  ML  G+ P  AT   ++   C+ G      
Sbjct: 408 VYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAV 467

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
             L  +   G  P   ++  L+  +C+  +L  A  LLD ++
Sbjct: 468 MALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 509



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 13/274 (4%)

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V E  G   +  TY+ +++ L K  +    + +LH+M       ++ IF  L+    K  
Sbjct: 83  VAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLMKHFSKLS 142

Query: 249 RIDMAGDMKEA-RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
             +   +M +A R IV E     L        +L++    +   +  L+ +K +    +E
Sbjct: 143 LHERVVEMFDAIRPIVRE--KPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSL---NLE 197

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK-PDDATYTMVIDCFCKNGDTKTGFR 366
            +   F  L+   C+ G +  A  ++ EM K  +  P+  TY+ +I+  C +G  K    
Sbjct: 198 PNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIE 257

Query: 367 LLKEMRS-DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           L +EM S D  LP   TYNAL+NG C   ++  A  +++ M   G  P+   Y+ L+ G 
Sbjct: 258 LFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 317

Query: 426 CKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           CK G  E+    FD+++S  GL  D   YT+L++
Sbjct: 318 CKEGRLEEAKEVFDEMKS-LGLKPDTVGYTTLIN 350


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 12/351 (3%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E+   G  P V +F   +  LCK+G+I  A  V D   +RGL    V++N LIN  CK
Sbjct: 208 FEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCK 267

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPND 234
             ++ E   L++ M+  G+ PDV TY+ LI GL     +D A  LL EM +    + P+ 
Sbjct: 268 EGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDV 327

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V F ++I G CK GR      M++A  + + M   G   + +TY  L+ GF +   +  A
Sbjct: 328 VTFNSVIHGLCKIGR------MRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMA 381

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           +++  E+I  G+E D+  ++ LI+GF +  +V  AE  LR M + G++ +   Y  ++  
Sbjct: 382 MNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAA 441

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+ G  +    L  EM  +  L AV  Y+ +M G CK G +K A  LL  MLD G+ PD
Sbjct: 442 LCQLGMMEQAMVLFNEMDMNCGLDAV-AYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPD 500

Query: 415 DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
            +TY+IL+    K G+ E+ +++    +  G V D A + SL+   S   Q
Sbjct: 501 AVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQ 551



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 167/334 (50%), Gaps = 11/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   + ++M  LC   +  +A  +       G+ A  V++ TLI G C A  LD    L
Sbjct: 113 PNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALEL 172

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M GSG+ P+V  YS L+ G C+  R  D   +  EM   G+ P+ ++FT  ID  CK
Sbjct: 173 LGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCK 232

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GRI       +A K+ D M   GL P+ +TY +L++  CKEG +  AL +R EM  +G+
Sbjct: 233 KGRIG------KAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGV 286

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLK--VGLKPDDATYTMVIDCFCKNGDTKTG 364
             D V +  LI+G     ++  A  +L EM++    ++PD  T+  VI   CK G  +  
Sbjct: 287 APDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQA 346

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             + + M   G +  + TYN L+ G  +  ++  A  L+  ++  G+ PD  TY+IL+ G
Sbjct: 347 ISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILING 406

Query: 425 HCKHGN---PEDFDKLQSEKGLVSDYACYTSLVS 455
             K       E F +  +++G+ ++   Y  L++
Sbjct: 407 FSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLA 440



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 157/300 (52%), Gaps = 15/300 (5%)

Query: 164 AVSFNTLINGHCK-AKNLDEGFRLKSVMEGSG---MRPDVYTYSALINGLCKENRLDDAE 219
           AVS+N ++   C+   +L +   L + M        RP+  +Y+ ++ GLC   R D+A 
Sbjct: 76  AVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAV 135

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL  M   G+  + V + TLI G C       A ++  A +++ EMC +G++P+ I Y+
Sbjct: 136 ALLRSMQASGVRADVVTYGTLIRGLCD------AAELDGALELLGEMCGSGVHPNVIVYS 189

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            LL G+C+ G  +    + +EM + G+E D + FT  I   C+ G++ +A ++   M++ 
Sbjct: 190 CLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQR 249

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL+P+  TY ++I+C CK G  +    L  EM   G  P V TYN L+ GL    ++  A
Sbjct: 250 GLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGA 309

Query: 400 NMLLDTML--DLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
             LL+ M+  D  V PD +T+N ++ G CK G         ++ +E+G + +   Y  L+
Sbjct: 310 MGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLI 369



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 9/253 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P V  FN ++H LCK G+++ A  V +   +RG     V++N LI G  +   ++
Sbjct: 320 DTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVN 379

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L S +  SG+ PD +TYS LING  K   +D AE+ L  M +RG+      +  L+
Sbjct: 380 MAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLL 439

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIRKE 300
              C+ G       M++A  + +EM  N GL  D + Y+ ++ G CK GD+++A  + ++
Sbjct: 440 AALCQLGM------MEQAMVLFNEMDMNCGL--DAVAYSTMMYGACKSGDIKAAKQLLQD 491

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+  G+  D V ++ LI+ F + G + EAER+L++M   G  PD A +  +I  +   G 
Sbjct: 492 MLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQ 551

Query: 361 TKTGFRLLKEMRS 373
                 L+ EMR+
Sbjct: 552 INKILDLIHEMRA 564



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 131/263 (49%), Gaps = 19/263 (7%)

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDV---YTYSALINGLCKEN-RLDDAELLLHE 224
            L+N   +A  + E   L S +      PDV    +Y+ ++  LC+    L  A  LL +
Sbjct: 49  ALLNRRLRAAPVTEACSLLSAL------PDVRDAVSYNIVLAALCRRGGDLRQALSLLAD 102

Query: 225 MCERG---LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           M         PN V +T ++ G C + R D      EA  ++  M  +G+  D +TY  L
Sbjct: 103 MSREAHPAARPNAVSYTMVMRGLCASRRTD------EAVALLRSMQASGVRADVVTYGTL 156

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G C   +L+ AL++  EM   G+  + + ++ L+ G+CR G+  +  ++  EM ++G+
Sbjct: 157 IRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGV 216

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           +PD   +T  ID  CK G      ++   M   G  P V TYN L+N LCK G ++ A  
Sbjct: 217 EPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALA 276

Query: 402 LLDTMLDLGVVPDDITYNILLEG 424
           L + M D GV PD +TYN L+ G
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAG 299



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           ++ +M+  CK G IK A+ +  +    GL   AV+++ LIN   K  +L+E  R+   M 
Sbjct: 469 YSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMA 528

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
            SG  PDV  + +LI G   E +++    L+HEM  + +  +     TL+
Sbjct: 529 ASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRAKNVAIDPKFICTLV 578


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 169/337 (50%), Gaps = 9/337 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +N L+    K  +  DA  + +E   +G+ ++ V+ N ++ G C+   L+E   
Sbjct: 348 SPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALG 407

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              +M   G+ PDV TY+ LI+  CK   +  A +L+ EM   GL  +     TL+   C
Sbjct: 408 RLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLC 467

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K  R +      EA +++      G  PD+++Y  ++  + KE   E AL +  EM KR 
Sbjct: 468 KEKRYE------EAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRK 521

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +      +  LI G C  GK+ EA   L E++K GL PDD TY ++I  +CK GD +  F
Sbjct: 522 LTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAF 581

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +   +M  +   P V T N LMNGLC HG+L+ A  L ++  + G   D ITYN L++  
Sbjct: 582 QFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQAL 641

Query: 426 CKHGNPED---FDKLQSEKGLVSDYACYTSLVSKSSK 459
           CK G+ +    F      +GL  D   Y  ++S  S+
Sbjct: 642 CKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSE 678



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 180/365 (49%), Gaps = 9/365 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +    +  L    E+ D G   S+   N+++  LC+EG++++A        + G
Sbjct: 357 LVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEG 416

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    +++NTLI+ +CKA+N+ + F L   M  SG++ D +T + L+  LCKE R ++AE
Sbjct: 417 LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAE 476

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL    +RG  P++V + T++  + K  + +       A  + DEM    L P   TY 
Sbjct: 477 ELLRSPPQRGFVPDEVSYGTVMAAYFKENKPE------PALYLWDEMSKRKLTPSIYTYN 530

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C  G L  A+D   E++K+G+  D+  +  +I  +C+ G + +A +   +ML+ 
Sbjct: 531 TLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLEN 590

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
             KPD  T   +++  C +G  +   +L +     G    V TYN L+  LCK G +  A
Sbjct: 591 YFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTA 650

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSK 456
                 M   G+ PD  TYN++L    + G  E+   +     E G +S+   Y  + S 
Sbjct: 651 LHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSS 710

Query: 457 SSKYR 461
           + + +
Sbjct: 711 AEEVK 715



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 182/383 (47%), Gaps = 16/383 (4%)

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRT--NLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           +  FR  R+ + R   +    ++  + R+    P  +L  +  ++     P+ Y FN+L+
Sbjct: 160 LHSFR--RRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLV 217

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
           H  C +G + DA          GL    V++NTL+  HC+   L E   L + M+  G+ 
Sbjct: 218 HTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIA 277

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P   TY+ L++   +   +  A  ++  M   G  P+   +  L  G C+ G++D     
Sbjct: 278 PTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVD----- 332

Query: 257 KEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
            EA K+ DEM   + ++PD +TY  L+D   K      AL++ +EM  +G++   V    
Sbjct: 333 -EAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNI 391

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           ++ G CR G++ EA   L+ M + GL PD  TY  +ID +CK  +    F L+ EM   G
Sbjct: 392 VVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSG 451

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-- 433
                 T N L+  LCK  + + A  LL +    G VPD+++Y  ++  + K   PE   
Sbjct: 452 LKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPAL 511

Query: 434 --FDKLQSEKGLVSDYACYTSLV 454
             +D++ S++ L      Y +L+
Sbjct: 512 YLWDEM-SKRKLTPSIYTYNTLI 533



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 50/298 (16%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           + N P   L  + E+     +PS+Y +N L+  LC  GK+ +A    +E  K+GL     
Sbjct: 503 KENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDT 562

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++N +I+ +CK  +L++ F+  + M  +  +PDV T + L+NGLC   +L+ A  L    
Sbjct: 563 TYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESW 622

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMA----GDMKEARKIVDEMCTNGLNPDKITYTIL 281
            E+G   + + + TLI   CK+G +D A     DM EAR         GL PD  TY ++
Sbjct: 623 AEKGKKVDVITYNTLIQALCKDGDVDTALHFFADM-EAR---------GLQPDAFTYNVV 672

Query: 282 LDGFCKEGDLESALDI---------------------RKEMIKRGIEL------------ 308
           L    + G  E A ++                       E +K G +             
Sbjct: 673 LSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNA 732

Query: 309 ---DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
              D  ++   +   C GG++ EA+ +L EM++ G+  D +TY  +++   K    +T
Sbjct: 733 KGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQKRQT 790


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 160/322 (49%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G +P   +++V++   C+ G  + A  V ++   RG      + N ++N  C   
Sbjct: 184 EMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQG 243

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++DE   L   +   G  PDV +Y+A++ GLC   R    + L+ EM      PN V F 
Sbjct: 244 SVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFN 303

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI   C+NG  +         +++ +M  +G  PD   Y  ++DG CKEG LE A +I 
Sbjct: 304 TLISYLCRNGLFE------RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEIL 357

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M   G++ + V +  L+ G C   +  E E +L EM       DD T+ +++D FC+N
Sbjct: 358 NRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQN 417

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       LL++M   G +P V TY  ++NG CK G +  A MLL +M   G  P+ I+Y
Sbjct: 418 GLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY 477

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
            I+L+G C      D + L S+
Sbjct: 478 TIVLKGLCSAERWVDAEDLMSQ 499



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 183/345 (53%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P++  FN L+  LC+ G  +    V  +  + G       + T+I+G CK  
Sbjct: 289 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEG 348

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    + + M   G++P+V  Y+ L+ GLC   R ++ E LL EM ++    +DV F 
Sbjct: 349 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 408

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M  +G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 409 ILVDFFCQNGLVD------RVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLL 462

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G + + +++T ++ G C   + V+AE ++ +M++ G   +  T+  +I+  CK 
Sbjct: 463 KSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKK 522

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+   A  LL+ M++ G+ P+ I Y
Sbjct: 523 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 582

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     + G        FD +Q +  + SD   Y +++S   K
Sbjct: 583 SSIASALSREGRINKVIQMFDNIQ-DTTIRSDAVLYNAVISSLCK 626



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 170/339 (50%), Gaps = 9/339 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++++G +P + ++  ++  +CKEG ++ A  + +     GL    V +NTL+ G C A+
Sbjct: 324 QMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 383

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E   L + M       D  T++ L++  C+   +D    LL +M E G  P+ + +T
Sbjct: 384 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYT 443

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I+G CK G ID      EA  ++  M   G  P+ I+YTI+L G C       A D+ 
Sbjct: 444 TVINGFCKEGLID------EAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLM 497

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +MI++G  L+ + F  LI+  C+ G V +A  +L++ML  G  PD  +Y+ VID   K 
Sbjct: 498 SQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 557

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G T     LL  M + G  P    Y+++ + L + G++     + D + D  +  D + Y
Sbjct: 558 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLY 617

Query: 419 NILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           N ++   CK G  E   +F       G V + + YT L+
Sbjct: 618 NAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 656



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 159/325 (48%), Gaps = 9/325 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N++++ +C +G + +A  +  +    G     VS+N ++ G C AK       L   M  
Sbjct: 233 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 292

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P++ T++ LI+ LC+    +    +L +M E G TP+  ++ T+IDG CK G +++
Sbjct: 293 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 352

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A       +I++ M + GL P+ + Y  LL G C     E   ++  EM  +   LD+V 
Sbjct: 353 A------HEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 406

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+  FC+ G V     +L +ML+ G  PD  TYT VI+ FCK G       LLK M 
Sbjct: 407 FNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 466

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           + G  P   +Y  ++ GLC   +  +A  L+  M+  G   + IT+N L+   CK G  E
Sbjct: 467 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 526

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  +    G   D   Y++++
Sbjct: 527 QAIELLKQMLVNGCSPDLISYSTVI 551



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 144/281 (51%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++  + G     +++ T+ING CK   +DE   L   M 
Sbjct: 407 FNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 466

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC   R  DAE L+ +M ++G   N + F TLI+  CK G ++
Sbjct: 467 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 526

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  + AL++   M+ +G+  + +
Sbjct: 527 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 580

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++ S   R G++ +  +M   +    ++ D   Y  VI   CK G+T+     L  M
Sbjct: 581 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 640

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S G +P   TY  L+ GL   G +K A  +L  +   G +
Sbjct: 641 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 681



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 12/256 (4%)

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+A++ G C+  +L+ A  L   +    + PN   +  ++   C  GRI       +A  
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRI------ADALA 180

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++DEM   G  P    Y ++L+  C+ G   SA+ + +++  RG  LD      +++  C
Sbjct: 181 VLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAIC 240

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             G V EA  +LR++   G +PD  +Y  V+   C          L++EM      P + 
Sbjct: 241 DQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 300

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---Q 438
           T+N L++ LC++G  +  + +L  M++ G  PD   Y  +++G CK G+ E   ++    
Sbjct: 301 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 360

Query: 439 SEKGLVSDYACYTSLV 454
              GL  +  CY +L+
Sbjct: 361 PSYGLKPNVVCYNTLL 376



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 41/187 (21%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G   +   FN L++ LCK+G ++ A  +  +    G     +S++T+I+G  KA 
Sbjct: 499 QMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAG 558

Query: 179 NLDEGFRLKSVMEGSGMRP-----------------------------------DVYTYS 203
             DE   L +VM   GM P                                   D   Y+
Sbjct: 559 KTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYN 618

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           A+I+ LCK    + A   L  M   G  PN+  +T LI G    G +      KEA++++
Sbjct: 619 AVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFV------KEAQEML 672

Query: 264 DEMCTNG 270
            E+C+ G
Sbjct: 673 TELCSKG 679


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 188/349 (53%), Gaps = 13/349 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA--VSFNTLING 173
            +L +  +   PSV  FN L+H L    +++ A  +F     + L+ T   VS N L+ G
Sbjct: 156 LFLSLPSFNSHPSVRSFNALLHSLVAARRLRLAAALFRAAPTK-LYITPDLVSCNILLKG 214

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
               ++LD   ++   M G G+ PDV TY+ +++  C +  L  A+ L  ++   G  P+
Sbjct: 215 LVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGGRVPD 274

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
             ++T LIDG+C+ G+I      ++A +I+DEM   G+ P+++TY+++++  CKEG    
Sbjct: 275 VTMYTVLIDGYCRTGKI------QDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAE 328

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++ +EM+  G   D      ++   C+ GK  EA +M R M+K  + PD+     +I 
Sbjct: 329 ACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTITNTLIY 388

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CK+G  +   +L  E+   G+ P++ TYN+L++GLC++G+L+ A  + D M++    P
Sbjct: 389 WLCKSGMVREARKLFDELEK-GYKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEP 447

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           + +TY  L++G CK G P++   + +E   KG       Y  LV   S+
Sbjct: 448 NAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSLSE 496


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 180/381 (47%), Gaps = 62/381 (16%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y +  ++  LCK GK+     +  E  + GL  T V++N L++  CK+  ++E FRLK  
Sbjct: 12  YSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGR 71

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ME  GM P V T+  LINGL +  R  +  ++L EM + G++PN+VI+  LI  HC+ G 
Sbjct: 72  MEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGH 131

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD------------------- 290
                   +A ++ DEM    + P  +TY ++    CKEG+                   
Sbjct: 132 CS------QALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVH 185

Query: 291 -----------------LESALDIRKEMIKRGIELDNVAFTALISGFCRGGK-------- 325
                            LES + I  EM+ RG+  ++   TA +   C+GGK        
Sbjct: 186 CGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIW 245

Query: 326 ---------VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
                    + EA ++++ ML  G++ D  TY ++I   CK+   +   +L  +M   G 
Sbjct: 246 FKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGF 305

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P + T+N L++  C  G+++    LLD M   G+ PD ++Y  +++GHCK  +     +
Sbjct: 306 KPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKE 365

Query: 437 LQSE---KGLVSDYACYTSLV 454
             +E   +GL  +   Y +L+
Sbjct: 366 YLTELMDRGLKPNVFIYNALI 386



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 165/364 (45%), Gaps = 47/364 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +PSV  F +L++ L +  +  +  +V  E  + G+    V +N LI  HC+  +  + 
Sbjct: 76  GMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQA 135

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL--------------------- 222
            RL   M    M+P   TY+ +   LCKE  ++ AE +L                     
Sbjct: 136 LRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAW 195

Query: 223 ---------------HEMCERGLTPNDVIFTTLIDGHCKNGR-----------IDMAGDM 256
                          +EM  RG+ PND + T  +   CK G+           ++    M
Sbjct: 196 LLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYM 255

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           KEA K++  M   G+  D ITY I++ G CK+  +E A+ +  +M +RG + D   F  L
Sbjct: 256 KEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTL 315

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           +  +C  GK+ E   +L +M   GL+PD  +Y  +ID  CK  D +     L E+   G 
Sbjct: 316 LHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGL 375

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P V  YNAL+ G  ++G +  A   ++TM   G+ P ++TY  L+   C  G  E+   
Sbjct: 376 KPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKT 435

Query: 437 LQSE 440
           + S+
Sbjct: 436 IFSQ 439



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 166/344 (48%), Gaps = 27/344 (7%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+  +    M +LCK GK ++A                + F TL  G    K
Sbjct: 212 EMVTRGMRPNDPLMTACMRELCKGGKHQEA--------------VGIWFKTLNKG----K 253

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E  ++   M   G+  D  TY+ +I G CK++++++A  L  +M  RG  P+   F 
Sbjct: 254 YMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFN 313

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+  +C  G+      M+E   ++D+M T GL PD ++Y  ++DG CK  D+  A +  
Sbjct: 314 TLLHAYCNLGK------MEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYL 367

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E++ RG++ +   + ALI G+ R G +  A   +  M   G++P + TY  ++   C  
Sbjct: 368 TELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHA 427

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    +  + R +     V  Y  ++ G CK G++  A    + M   G+ P+ +TY
Sbjct: 428 GLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTY 487

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
             L+  + K GN E+  KL  E    G++ D   Y +L+++ S+
Sbjct: 488 TTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSE 531



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 7/239 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P ++ FN L+H  C  GK+++   + D+    GL    VS+ T+I+GHCKAK++ + 
Sbjct: 304 GFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKA 363

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
               + +   G++P+V+ Y+ALI G  +   +  A   +  M   G+ P +V + +L+  
Sbjct: 364 KEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYW 423

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C       AG ++EA+ I  +   N ++   I YTI++ G+CK G +  A+   +EM  
Sbjct: 424 MCH------AGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRS 477

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY-TMVIDCFCKNGDT 361
           RGI  + + +T L+  + + G   EA ++  EM+  G+ PD+ TY T++  C  K G T
Sbjct: 478 RGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEKGGKT 536



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 6/185 (3%)

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
           R +  N+  +T +I   CK G++D   +M      + E+   GL P  +TY +L+D  CK
Sbjct: 5   RNVALNEYSYTAMIKALCKAGKVDAGFEM------LAELWRAGLQPTVVTYNVLMDALCK 58

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G +E A  ++  M + G+    V F  LI+G  RG +  E   +L+EM ++G+ P++  
Sbjct: 59  SGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVI 118

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  +I   C+ G      RL  EM      P   TYN +   LCK G+++ A  +L+ ML
Sbjct: 119 YNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDML 178

Query: 408 DLGVV 412
            +G+ 
Sbjct: 179 SIGMT 183



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 72/127 (56%)

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R + L+  ++TA+I   C+ GKV     ML E+ + GL+P   TY +++D  CK+G  + 
Sbjct: 5   RNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEE 64

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
            FRL   M   G  P+V T+  L+NGL +  +     ++L  M  LGV P+++ YN L+ 
Sbjct: 65  AFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIG 124

Query: 424 GHCKHGN 430
            HC+ G+
Sbjct: 125 WHCRKGH 131



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 7/232 (3%)

Query: 52  TRGTHLPGL-VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
           TR    P L   + L+  Y +LG +++       ++    +        +ID   +    
Sbjct: 301 TRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDI 360

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
                +  E++D G  P+V+++N L+    + G I  A    +     G+  T V++ +L
Sbjct: 361 RKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSL 420

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +   C A  ++E   + S    + +   V  Y+ +I G CK  ++ +A     EM  RG+
Sbjct: 421 MYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGI 480

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
           +PN + +TTL+  + K      +G+ +EA K+ DEM  +G+ PD ITY  L+
Sbjct: 481 SPNKLTYTTLMYAYSK------SGNSEEASKLFDEMVGSGVIPDNITYGTLI 526



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +++ G     +   +LM      G +++A   F   R++   +   G   +I    +   
Sbjct: 405 MKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGK 464

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
               + ++ E+   G SP+   +  LM+   K G  ++A  +FDE    G+    +++ T
Sbjct: 465 MVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGT 524

Query: 170 LINGHCKAK 178
           LI   C  K
Sbjct: 525 LI-ARCSEK 532


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 219/498 (43%), Gaps = 71/498 (14%)

Query: 17  LVAHKMHSQARDLLHLIVSK-----KGMGSSASLFASILETRGTHLPGLVLDALMIVYVD 71
           L++H+  S A+ LL   +S             S F  +   R      ++LD  +  YV 
Sbjct: 94  LLSHQKLSDAKSLLTAFISADRTHLLHHHLLHSPFKKVQSLR------VILDTSIGAYVS 147

Query: 72  LGFLDDAIQCF-RLLRKHY--------------FRIPARGCRCLIDRMMRT-------NL 109
                 A Q F R+ R H                R P++   CL   +          N 
Sbjct: 148 CNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVRYPSKPSVCLSKAIFTNVIKFGVKNK 207

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMH--KLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
            +  +G   ++ D+   P    +N ++    LC+ GK   +    +E  + GL    +++
Sbjct: 208 LSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITY 267

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
           NT+I+G+C+   +++ F+ ++ M     +PD++T + L+ GLC E  LD+A  L +    
Sbjct: 268 NTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWIS 327

Query: 228 RGLTPNDVIFTTLIDGHCKNGRI------------------------------DMAGDMK 257
           +G   + V + T+I G CK GR                               D  G ++
Sbjct: 328 KGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVE 387

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A +  ++M      PD  T  ILL G C EG L++AL +    I +G  +D V +  +I
Sbjct: 388 KAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTII 447

Query: 318 SGFCRGGKVVEAERMLREML-KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           SG C+ G+  EA  +L EM  K GL PD  TY  +I  +C+ G  +  F+   +M     
Sbjct: 448 SGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSF 507

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FD 435
            P + T N L+ GLC+ G L  A  L +T +  G   D +TYN ++ G CK G  E+ FD
Sbjct: 508 KPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFD 567

Query: 436 KLQS--EKGLVSDYACYT 451
            L    EK L  D  CYT
Sbjct: 568 LLAEMKEKKLGPD--CYT 583



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  ++++  + P ++  N+L+  LC EG + +A  +F+ +  +G    AV++NT+I+G C
Sbjct: 286 FRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLC 345

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC-KENRLDDAELLLHEMCERGLTPND 234
           K    +E F L + ME   + PD YTY+A++  L   E +++ A    ++M E+   P+ 
Sbjct: 346 KEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDL 405

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                L+ G C  G +D       A K+ +   + G   D +TY  ++ G CKEG  E A
Sbjct: 406 FTCNILLRGLCTEGMLD------NALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 459

Query: 295 LDIRKEMI-KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
            D+  EM  K G+  D   +  +I G+CR G+V +A +   +M++   KPD  T  +++ 
Sbjct: 460 FDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLR 519

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             C+ G      +L     S G      TYN +++GLCK G+ + A  LL  M +  + P
Sbjct: 520 GLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGP 579

Query: 414 DDITYNILL 422
           D  TYN +L
Sbjct: 580 DCYTYNAIL 588



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 118/222 (53%), Gaps = 8/222 (3%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  ++++  + P ++  N+L+  LC EG + +A  +F+ +  +G    AV++NT+I+G C
Sbjct: 392 FRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLC 451

Query: 176 KAKNLDEGFRLKSVME-GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           K    +E F L + ME  +G+ PD  TY+ +I G C+E +++ A    ++M E+   P+ 
Sbjct: 452 KEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDL 511

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
                L+ G C+ G       + +A K+ +   + G   D +TY  ++ G CKEG  E A
Sbjct: 512 FTCNILLRGLCREGM------LVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 565

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            D+  EM ++ +  D   + A++      G+ +EAE  + ++
Sbjct: 566 FDLLAEMKEKKLGPDCYTYNAILCALADAGR-MEAEEFMSKI 606


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 189/386 (48%), Gaps = 47/386 (12%)

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167
           NLP +     L++   G+ P ++ FN  ++ LC++ +++ A  +F     +G     VS+
Sbjct: 99  NLPLIH-SLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSY 157

Query: 168 NTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227
             +I+  C AK  DE  ++   +   G+ PD     AL+ GLC   R+D A  L+  + +
Sbjct: 158 TIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIK 217

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
            G+  N +++  LIDG C+ GR+D      +A KI   M   G  PD +TY ILL+  C+
Sbjct: 218 GGVKVNSLVYNALIDGFCRMGRVD------KAMKIKAFMSRTGCVPDLVTYNILLNYCCE 271

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA-----ERM---------- 332
           EG ++ A+ + + M + G+E D  ++  L+ GFC+   V  A     ERM          
Sbjct: 272 EGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVS 331

Query: 333 --------------------LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
                                 EM   G++PD  T+ ++ID F + G T    +LL EM 
Sbjct: 332 YNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMT 391

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
               LP    Y A+++ LCK+G++  A+ +   M++ GV PD I+YN LL G CK     
Sbjct: 392 KMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVM 451

Query: 433 D----FDKLQSEKGLVSDYACYTSLV 454
           D    FD++QS KGL  D   Y  +V
Sbjct: 452 DAMHLFDEMQS-KGLYPDEVTYKLIV 476



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 157/308 (50%), Gaps = 6/308 (1%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           +  ++D G SP       L+  LC  G++  A  +     K G+   ++ +N LI+G C+
Sbjct: 177 WRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCR 236

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              +D+  ++K+ M  +G  PD+ TY+ L+N  C+E  +D+A  L+  M   G+ P+   
Sbjct: 237 MGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYS 296

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +  L+ G CK   +D A  M   R     MC      D ++Y  ++  FCK        +
Sbjct: 297 YNELLKGFCKANMVDRAHLMMVERMQTKGMC------DVVSYNTVITAFCKARRTRKGYE 350

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM  +GI  D V F  LI  F R G     +++L EM K+ + PD   YT V+D  C
Sbjct: 351 LFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLC 410

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           KNG       + ++M  +G  P V +YNAL+NG CK  ++ +A  L D M   G+ PD++
Sbjct: 411 KNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEV 470

Query: 417 TYNILLEG 424
           TY +++ G
Sbjct: 471 TYKLIVGG 478



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 163/336 (48%), Gaps = 6/336 (1%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
            D+A + +R L         + C  L+  +       +     + ++  G   +  V+N 
Sbjct: 170 FDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNA 229

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+   C+ G++  A  +     + G     V++N L+N  C+   +DE  RL   ME SG
Sbjct: 230 LIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSG 289

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD+Y+Y+ L+ G CK N +D A L++ E  +     + V + T+I   CK  R     
Sbjct: 290 VEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRT---- 345

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
             ++  ++ +EMC  G+ PD +T+ IL+D F +EG       +  EM K  +  D + +T
Sbjct: 346 --RKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYT 403

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           A++   C+ GKV  A  + R+M++ G+ PD  +Y  +++ FCK         L  EM+S 
Sbjct: 404 AVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSK 463

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           G  P   TY  ++ GL +  ++  A  + D M++ G
Sbjct: 464 GLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERG 499



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 164/341 (48%), Gaps = 23/341 (6%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN---GHCKAKNLDEGFRLKSVMEG 192
           + KL K G I  A  +FD+  +      +V +N  I     H +       +R   +  G
Sbjct: 17  ISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRG 76

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAEL---LLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
             + P  +TYS  I+ LC      +  L   LL +M   G  P+   F T ++  C+  R
Sbjct: 77  FSLLP--FTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNR 134

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           ++ A ++  +      M + G +PD ++YTI++D  C     + A  + + +I +G+  D
Sbjct: 135 LETALELFHS------MPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPD 188

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             A  AL+ G C GG+V  A  ++  ++K G+K +   Y  +ID FC+ G      ++  
Sbjct: 189 YKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKA 248

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M   G +P + TYN L+N  C+ G +  A  L++TM   GV PD  +YN LL+G CK  
Sbjct: 249 FMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCK-A 307

Query: 430 NPED------FDKLQSEKGLVSDYACYTSLVSKSSKYRQKR 464
           N  D       +++Q+ KG+  D   Y ++++   K R+ R
Sbjct: 308 NMVDRAHLMMVERMQT-KGM-CDVVSYNTVITAFCKARRTR 346



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 29/215 (13%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P +Y +N L+   CK   +  A ++  E  +       VS+NT+I   CKA+   +G
Sbjct: 289 GVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKG 348

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           + L   M G G+RPD+ T++ LI+   +E      + LL EM +  + P+ + +T ++D 
Sbjct: 349 YELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDH 408

Query: 244 HCKNGRIDMA----GDMKE-------------------------ARKIVDEMCTNGLNPD 274
            CKNG++D+A     DM E                         A  + DEM + GL PD
Sbjct: 409 LCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPD 468

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           ++TY +++ G  +   +  A  +  +M++RG  L+
Sbjct: 469 EVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLN 503



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID  +R     V      E+      P    +  ++  LCK GK+  A  VF +  + G
Sbjct: 370 LIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENG 429

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           ++   +S+N L+NG CK   + +   L   M+  G+ PD  TY  ++ GL +  ++  A 
Sbjct: 430 VNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLAC 489

Query: 220 LLLHEMCERGLTPNDVIFTTLIDG 243
            +  +M ERG T N  +  TL++ 
Sbjct: 490 RVWDQMMERGFTLNRHLSETLVNA 513



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 53/110 (48%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + +     V    + ++++ G +P V  +N L++  CK  ++ DA  +FDE   +G
Sbjct: 405 VVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKG 464

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           L+   V++  ++ G  + K +    R+   M   G   + +    L+N +
Sbjct: 465 LYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNAI 514


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 179/353 (50%), Gaps = 29/353 (8%)

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           P   +G +  +   G  P V+ +N LM  LCK G+  +A+ +FD   KRG    + ++ T
Sbjct: 289 PNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGT 348

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           L++G+    +L +   L  +M  +G++PD Y ++ LI    K  ++DDA LL  +M  +G
Sbjct: 349 LLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQG 408

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEAR 260
           L P+ V +  ++D  C  G++D A                                 +A 
Sbjct: 409 LNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAE 468

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++  EM   G+ P+ I +  LL+  CKEG +  A +I   M++  ++ D + +  LI G+
Sbjct: 469 ELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGY 528

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           C  GKV EA ++L  M+  G+KP++ TY  +I+ +CKNG  +  F L ++M S G  P +
Sbjct: 529 CLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGI 588

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            TY+ ++ GL +  +   A  L   M+  G+  D  TYNI+L G C++   +D
Sbjct: 589 VTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDD 641



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 173/359 (48%), Gaps = 44/359 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKD-AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           GY P V  +N +++ L +EG+  D A  +FD+   +GL    V++N++I+   KA+ +D+
Sbjct: 197 GYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDK 256

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              +   M  +G  P+  T+++L++G C   + +DA  +   MC  G+ P+   + TL+ 
Sbjct: 257 AAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMG 316

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CKNGR        EARKI D M   G  P+  TY  LL G+  EG L     +   M+
Sbjct: 317 YLCKNGR------SMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMV 370

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           + GI+ D+  F  LI  + + GKV +A  +  +M + GL PD  TY +V+D  C  G   
Sbjct: 371 RNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVD 430

Query: 363 TGFRLLKEMRSDGHLP------------------------AVET-----------YNALM 387
                   + S+G  P                        AVE            +N L+
Sbjct: 431 DAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLL 490

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
           N LCK G +  A  + D M+ + V  D ITYN L++G+C HG  ++  KL   +G+V D
Sbjct: 491 NHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLL--EGMVLD 547



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 172/336 (51%), Gaps = 31/336 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P  Y+FN+L+    K GK+ DA ++F +  ++GL+   V++  +++  C    +D+ 
Sbjct: 373 GIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDA 432

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 +   G+ PD   +  LI+GLC  ++ D AE L  EM  RG+ PN++ F TL++ 
Sbjct: 433 MAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNH 492

Query: 244 HCKNG-------------RIDMA----------------GDMKEARKIVDEMCTNGLNPD 274
            CK G             R+D+                 G + EA K+++ M  +G+ P+
Sbjct: 493 LCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPN 552

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           ++TY  +++G+CK G +E A  + ++M  +G+    V ++ ++ G  +  +   A+ +  
Sbjct: 553 EVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYL 612

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR-SDGHLPAVETYNALMNGLCKH 393
            M+K G+K D  TY +++   C+N  T    R+ + +   D HL    T+N +++ L K 
Sbjct: 613 WMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLEN-RTFNIMIDALLKG 671

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           G+   A  L  ++L  G+VP+ +TY ++++   + G
Sbjct: 672 GRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQG 707



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 16/334 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++  ++V++    + G +  A        + G  A A++F+ L+   C  K   E   +
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 187 K-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC----ERGLTPNDVI-FTTL 240
               M   G  P+V++Y+ L+ GLC ENR   A  LLH M      RG  P DV+ + T+
Sbjct: 149 ALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTV 208

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I+G  + GR      +  A  + D+M   GL+PD +TY  ++    K   ++ A  +   
Sbjct: 209 INGLLREGR-----QLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVR 263

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+K G   + +   +L+ G+C  GK  +A  + + M + G++PD  TY  ++   CKNG 
Sbjct: 264 MVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGR 323

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
           +    ++   M   GH P   TY  L++G    G L   + LLD M+  G+ PD   +NI
Sbjct: 324 SMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNI 383

Query: 421 LLEGHCKHGNPED----FDKLQSEKGLVSDYACY 450
           L+  + KHG  +D    F K++  +GL  D   Y
Sbjct: 384 LIGTYTKHGKVDDAMLLFSKMR-RQGLNPDTVTY 416



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 164/347 (47%), Gaps = 18/347 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            ++  G++     F+ L+  LC + +  +A  +        G      S+  L+ G C  
Sbjct: 116 RVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDE 175

Query: 178 KNLDEGFRLKSVM-----EGSGMRPDVYTYSALINGLCKENR-LDDAELLLHEMCERGLT 231
               +   L   M        G  PDV +Y+ +INGL +E R LD A  L  +M ++GL+
Sbjct: 176 NRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLS 235

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V + ++I    K      A  M +A  ++  M  NG  P++IT+  LL G+C  G  
Sbjct: 236 PDVVTYNSIISALSK------ARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKP 289

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A+ + K M + G+E D   +  L+   C+ G+ +EA ++   M+K G KP+ ATY  +
Sbjct: 290 NDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTL 349

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +  +   G       LL  M  +G  P    +N L+    KHG++ +A +L   M   G+
Sbjct: 350 LHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGL 409

Query: 412 VPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
            PD +TY I+++  C  G  +D    F +L SE GL  D   + +L+
Sbjct: 410 NPDTVTYGIVMDALCMVGKVDDAMAQFGRLISE-GLTPDAVVFRNLI 455



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 179/376 (47%), Gaps = 14/376 (3%)

Query: 35  SKKGMGSSASLFASILETRG----THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90
           +K G    A L  S +  +G    T   G+V+DAL +V    G +DDA+  F  L     
Sbjct: 389 TKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMV----GKVDDAMAQFGRLISEGL 444

Query: 91  RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
              A   R LI  +   +         +E++  G  P+   FN L++ LCKEG +  A+ 
Sbjct: 445 TPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKN 504

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +FD   +  +    +++NTLI+G+C    +DE  +L   M   G++P+  TY+ +ING C
Sbjct: 505 IFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYC 564

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           K  R++DA  L  +M  +G+ P  V ++T++ G  +  R         A+++   M  +G
Sbjct: 565 KNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRT------AAAKELYLWMIKSG 618

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           +  D  TY I+L G C+    + AL I + +      L+N  F  +I    +GG+  EA+
Sbjct: 619 IKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAK 678

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +   +L  GL P+  TY +++    + G  +    L   +  +G        NAL+  L
Sbjct: 679 DLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKL 738

Query: 391 CKHGQLKNANMLLDTM 406
            + G+++ A + L  +
Sbjct: 739 LQKGEVRKAGVYLSKI 754



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 47/200 (23%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA-ER 331
           P+ ITY++++D   + G L+ A      +I+ G   + + F+ L+   C   +  EA + 
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
            LR M  +G  P+                                   V +Y  L+ GLC
Sbjct: 149 ALRRMPVLGCTPN-----------------------------------VFSYTILLKGLC 173

Query: 392 KHGQLKNANMLLDTMLDL-----GVVPDDITYNILLEGHCKHGNPED-----FDKLQSEK 441
              + + A  LL TM+       G  PD ++YN ++ G  + G   D     FD++  ++
Sbjct: 174 DENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQML-DQ 232

Query: 442 GLVSDYACYTSLVSKSSKYR 461
           GL  D   Y S++S  SK R
Sbjct: 233 GLSPDVVTYNSIISALSKAR 252


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 176/360 (48%), Gaps = 11/360 (3%)

Query: 75  LDDAIQCF-RLLRKHYFRIPAR-GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           L DA+  F R +       P+   C  LID + +       +  Y +++     P     
Sbjct: 21  LSDAVSLFHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSL 80

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           + L            A  V     KRG      + N ++ G C++   D+   L S M+ 
Sbjct: 81  SALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKR 140

Query: 193 S--GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGR 249
           +   + PD  TY+ L+NG CK  RL +A +L   M + G   PN V ++ LID +CK+G 
Sbjct: 141 NYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGE 200

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +       E   +++EM   GL  D   Y+ L+  FC EGD+E+  ++  EM++R +  +
Sbjct: 201 VG------EGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPN 254

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V ++ L+ G  R G+  EA  ML++M   G++PD   YT++ D  CKNG      ++L 
Sbjct: 255 VVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLD 314

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M   G  P   TYN ++NGLCK  ++ +A  +++ M+  G  PD +TYN LL+G C  G
Sbjct: 315 LMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAG 374



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 181/364 (49%), Gaps = 16/364 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L +  + T+ P+        +   G+  +VY  N+++   C+ G+   A  +F +  KR 
Sbjct: 83  LTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQM-KRN 141

Query: 160 LHATA---VSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRL 215
                   V++NTL+NG CKAK L E   L   M+  G  RP++ TYS LI+  CK   +
Sbjct: 142 YDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEV 201

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
            +   LL EM   GL  +  ++++LI   C  G      D++  R++ DEM    ++P+ 
Sbjct: 202 GEGLGLLEEMEREGLKADVFVYSSLISAFCGEG------DIETGRELFDEMLRRKVSPNV 255

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +TY+ L+ G  + G    A ++ K+M  RG+  D VA+T L  G C+ G+  +A ++L  
Sbjct: 256 VTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDL 315

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M++ G +P   TY +V++  CK       F +++ M   G  P   TYN L+ GLC  G+
Sbjct: 316 MVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGK 375

Query: 396 LKNANMLLDTMLD--LGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACY 450
           +  A  L   +L     V PD  T N L++G CK G   D  ++ S   E GL  +   Y
Sbjct: 376 IHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435

Query: 451 TSLV 454
             L+
Sbjct: 436 NFLI 439



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 180/344 (52%), Gaps = 7/344 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L    SP+V  ++ LM  L + G+ ++A  +  +   RG+    V++  L +G CK  
Sbjct: 245 EMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNG 304

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
              +  ++  +M   G  P   TY+ ++NGLCKE+R+DDA  ++  M ++G  P+ V + 
Sbjct: 305 RAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYN 364

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C  G+I  A D+   + ++ E     + PD  T   L+ G CKEG +  A  I 
Sbjct: 365 TLLKGLCGAGKIHEAMDL--WKLLLSE--KFHVKPDVFTCNNLIQGLCKEGRVHDAARIH 420

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M++ G++ + V +  LI G+    K++EA ++ +  ++ G  P+  TY+++I+  CK 
Sbjct: 421 SSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKM 480

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L  +M+  G  P V  YNALM  LC+   L+ A  L   M ++    D +++
Sbjct: 481 QMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSF 540

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           NI+++G  K G+ +   +L SE     LV D   ++ L+++ SK
Sbjct: 541 NIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSK 584



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 167/355 (47%), Gaps = 43/355 (12%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P    +NV+++ LCKE ++ DA  V +   K+G    AV++NTL+ G C A  
Sbjct: 316 MVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGK 375

Query: 180 LDEGFRLKSVM--EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           + E   L  ++  E   ++PDV+T + LI GLCKE R+ DA  +   M E GL  N V +
Sbjct: 376 IHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK---------- 287
             LI+G+        A  + EA K+      +G +P+ +TY+++++G CK          
Sbjct: 436 NFLIEGYLA------ARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGL 489

Query: 288 -------------------------EGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
                                    E  LE A  + +EM      +D V+F  +I G  +
Sbjct: 490 FCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLK 549

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            G V  A+ +L EM  + L PD  T++++I+ F K G       L ++M S GH+P V  
Sbjct: 550 AGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVV 609

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           +++L+ G    G+ +    LL  M D  VV D    + +L   C      D +K+
Sbjct: 610 FDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCHMSRNLDVEKI 664



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 153/328 (46%), Gaps = 27/328 (8%)

Query: 9   AYSTMVHFLV-AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
            Y+T++  L  A K+H +A DL  L++S+K       +F      +G    G V DA  I
Sbjct: 362 TYNTLLKGLCGAGKIH-EAMDLWKLLLSEK-FHVKPDVFTCNNLIQGLCKEGRVHDAARI 419

Query: 68  --VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
               V++G L   I  +  L + Y        R LI+           L  +   ++ G+
Sbjct: 420 HSSMVEMG-LQGNIVTYNFLIEGYL-----AARKLIE----------ALKLWKYAVESGF 463

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+   ++V+++ LCK   +  A+ +F +    G+  T + +N L+   C+  +L++   
Sbjct: 464 SPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARS 523

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M       DV +++ +I+G  K   +  A+ LL EM    L P+ V F+ LI+   
Sbjct: 524 LFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFS 583

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K G +D      EA  + ++M + G  P  + +  LL G+  +G+ E  + +  +M  + 
Sbjct: 584 KLGMLD------EAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKD 637

Query: 306 IELDNVAFTALISGFCRGGKVVEAERML 333
           + LD+   + +++  C   + ++ E++L
Sbjct: 638 VVLDSKLTSTILACLCHMSRNLDVEKIL 665


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 160/322 (49%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G +P   +++V++   C+ G  + A  V ++   RG      + N ++N  C   
Sbjct: 147 EMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQG 206

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++DE   L   +   G  PDV +Y+A++ GLC   R    + L+ EM      PN V F 
Sbjct: 207 SVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFN 266

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI   C+NG  +         +++ +M  +G  PD   Y  ++DG CKEG LE A +I 
Sbjct: 267 TLISYLCRNGLFE------RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEIL 320

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M   G++ + V +  L+ G C   +  E E +L EM       DD T+ +++D FC+N
Sbjct: 321 NRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQN 380

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       LL++M   G +P V TY  ++NG CK G +  A MLL +M   G  P+ I+Y
Sbjct: 381 GLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY 440

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
            I+L+G C      D + L S+
Sbjct: 441 TIVLKGLCSAERWVDAEDLMSQ 462



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 171/339 (50%), Gaps = 9/339 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++++G +P + ++  ++  +CKEG ++ A  + +     GL    V +NTL+ G C A+
Sbjct: 287 QMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 346

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E   L + M       D  T++ L++  C+   +D    LL +M ERG  P+ + +T
Sbjct: 347 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYT 406

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I+G CK G ID      EA  ++  M   G  P+ I+YTI+L G C       A D+ 
Sbjct: 407 TVINGFCKEGLID------EAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLM 460

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +MI++G  L+ + F  LI+  C+ G V +A  +L++ML  G  PD  +Y+ VID   K 
Sbjct: 461 SQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 520

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G T     LL  M + G  P    Y+++ + L + G++     + D + D  +  D + Y
Sbjct: 521 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLY 580

Query: 419 NILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           N ++   CK G  E   +F       G V + + YT L+
Sbjct: 581 NAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 619



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 182/345 (52%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P++  FN L+  LC+ G  +    V  +  + G       + T+I+G CK  
Sbjct: 252 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEG 311

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    + + M   G++P+V  Y+ L+ GLC   R ++ E LL EM ++    +DV F 
Sbjct: 312 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M   G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 372 ILVDFFCQNGLVD------RVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLL 425

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G + + +++T ++ G C   + V+AE ++ +M++ G   +  T+  +I+  CK 
Sbjct: 426 KSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKK 485

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+   A  LL+ M++ G+ P+ I Y
Sbjct: 486 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 545

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     + G        FD +Q +  + SD   Y +++S   K
Sbjct: 546 SSIASALSREGRINKVIQMFDNIQ-DTTIRSDAVLYNAVISSLCK 589



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 159/325 (48%), Gaps = 9/325 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N++++ +C +G + +A  +  +    G     VS+N ++ G C AK       L   M  
Sbjct: 196 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P++ T++ LI+ LC+    +    +L +M E G TP+  ++ T+IDG CK G +++
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 315

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A       +I++ M + GL P+ + Y  LL G C     E   ++  EM  +   LD+V 
Sbjct: 316 A------HEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 369

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+  FC+ G V     +L +ML+ G  PD  TYT VI+ FCK G       LLK M 
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           + G  P   +Y  ++ GLC   +  +A  L+  M+  G   + IT+N L+   CK G  E
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  +    G   D   Y++++
Sbjct: 490 QAIELLKQMLVNGCSPDLISYSTVI 514



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 145/281 (51%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++  +RG     +++ T+ING CK   +DE   L   M 
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC   R  DAE L+ +M ++G   N + F TLI+  CK G ++
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  + AL++   M+ +G+  + +
Sbjct: 490 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 543

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++ S   R G++ +  +M   +    ++ D   Y  VI   CK G+T+     L  M
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 603

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S G +P   TY  L+ GL   G +K A  +L  +   G +
Sbjct: 604 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 12/256 (4%)

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+A++ G C+  +L+ A  L   +    + PN   +  ++   C  GRI       +A  
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRI------ADALA 143

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++DEM   G  P    Y ++L+  C+ G   SA+ + +++  RG  LD      +++  C
Sbjct: 144 VLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAIC 203

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             G V EA  +LR++   G +PD  +Y  V+   C          L++EM      P + 
Sbjct: 204 DQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 263

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---Q 438
           T+N L++ LC++G  +  + +L  M++ G  PD   Y  +++G CK G+ E   ++    
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 323

Query: 439 SEKGLVSDYACYTSLV 454
              GL  +  CY +L+
Sbjct: 324 PSYGLKPNVVCYNTLL 339



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 41/187 (21%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G   +   FN L++ LCK+G ++ A  +  +    G     +S++T+I+G  KA 
Sbjct: 462 QMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAG 521

Query: 179 NLDEGFRLKSVMEGSGMRP-----------------------------------DVYTYS 203
             DE   L +VM   GM P                                   D   Y+
Sbjct: 522 KTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYN 581

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           A+I+ LCK    + A   L  M   G  PN+  +T LI G    G +      KEA++++
Sbjct: 582 AVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFV------KEAQEML 635

Query: 264 DEMCTNG 270
            E+C+ G
Sbjct: 636 TELCSKG 642


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 172/331 (51%), Gaps = 8/331 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P    +N  +H L K G   +A     E  +R      V ++ +++  C+   +D
Sbjct: 303 DSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMD 362

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   + + M   G  PDV TY+++INGLC+E ++D A+ +L +M + G  PN V +T L+
Sbjct: 363 KAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALL 422

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G CKNG      +  EAR++++    +   P+ ITY++L+ GF +EG    A D+ +EM
Sbjct: 423 NGLCKNG------NSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREM 476

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           IK+G     V    LI   C+  KV EA+R + + L  G   +   +T VI  FC+  D 
Sbjct: 477 IKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDL 536

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    LL +M      P V TY  +++ L K G+++ A  L   ML +G++P  +TY  +
Sbjct: 537 EAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTV 596

Query: 422 LEGHCKHGNPEDFDKLQSEKGLVSDYACYTS 452
           +  +C+ G  ED  KL  +  ++S   C T+
Sbjct: 597 IHQYCRMGRVEDLLKLLEK--MLSRQECRTA 625



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 191/423 (45%), Gaps = 24/423 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y T++ FL   K   + R L+  ++    +      + + +     H            
Sbjct: 276 SYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH------------ 323

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G  D+A++  R   +  FR+   G   ++    R            E+   G  P 
Sbjct: 324 ----GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPD 379

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  +++ LC+E K+  A+ +  +  K G     VS+  L+NG CK  N  E   + +
Sbjct: 380 VVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMN 439

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           + E     P+  TYS L++G  +E +  +A  L+ EM ++G  P  V    LI   C+  
Sbjct: 440 MSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEE 499

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++D      EA++ +++   NG   + + +T ++ GFC++ DLE+AL +  +M       
Sbjct: 500 KVD------EAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHP 553

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V +T +I    + G++ EA ++  +ML+VGL P   TY  VI  +C+ G  +   +LL
Sbjct: 554 DVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLL 613

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           ++M S         YN ++  LC  G L+ A  LL  +L      D  T ++L+E +   
Sbjct: 614 EKMLSRQECRT--AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSK 671

Query: 429 GNP 431
           G P
Sbjct: 672 GIP 674



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 157/304 (51%), Gaps = 7/304 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            F  +M    + GK+++A  V     K G+       NT I+       LD+  R    M
Sbjct: 171 AFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM 230

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +   + P+V TY+ LI G C  +RL+DA  L+ EM  +G +P+ + + T++   CK  RI
Sbjct: 231 QIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRI 290

Query: 251 DMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 KE R ++++M  +  L PD++TY   +    K G  + AL+  +E  +R   +D
Sbjct: 291 ------KEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVD 344

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V ++A++  FCR G++ +A+ ++ EM   G  PD  TYT VI+  C+        ++L+
Sbjct: 345 KVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLR 404

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P   +Y AL+NGLCK+G    A  +++   +   +P+ ITY++L+ G  + G
Sbjct: 405 QMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREG 464

Query: 430 NPED 433
              +
Sbjct: 465 KSSE 468



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 154/306 (50%), Gaps = 7/306 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P + + N  +H L    ++  A    +      +    +++N LI G+C    L++ 
Sbjct: 199 GIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDA 258

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIFTTLID 242
             L + M   G  PD  +Y  ++  LCKE R+ +  LL+ +M  +  L P+ V + T + 
Sbjct: 259 MELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVH 318

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              K+G  D      EA + + E        DK+ Y+ ++  FC+EG ++ A +I  EM 
Sbjct: 319 MLSKHGHGD------EALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMF 372

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G   D V +T++I+G C+  KV +A++MLR+M K G KP+  +YT +++  CKNG++ 
Sbjct: 373 SKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSL 432

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               ++     D  +P   TY+ LM+G  + G+   A  L+  M+  G  P  +  N+L+
Sbjct: 433 EAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLI 492

Query: 423 EGHCKH 428
           +  C+ 
Sbjct: 493 QSLCQE 498



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P+    N+L+  LC+E K+ +A+   ++    G     V+F T+I+G C+  
Sbjct: 475 EMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKD 534

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    L   M  S   PDV TY+ +I+ L K+ R+++A  L  +M   GL P  V + 
Sbjct: 535 DLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYR 594

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I  +C+ GR++      +  K++++M +      +  Y  +++  C  G+LE A  + 
Sbjct: 595 TVIHQYCRMGRVE------DLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKLL 646

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            ++++   ++D      LI  +   G  + +  +   M    L PD
Sbjct: 647 GKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPD 692



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 6/186 (3%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+   Y ++   + + G L +A+ +   M K GIE D       I     G ++ +A R 
Sbjct: 169 PEAFGYVMV--SYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF 226

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L  M  V ++P+  TY  +I  +C     +    L+ EM   G  P   +Y  +M  LCK
Sbjct: 227 LERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCK 286

Query: 393 HGQLKNANMLLDTML-DLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
             ++K   +L++ ML D  ++PD +TYN  +    KHG+ +   +F +   E+    D  
Sbjct: 287 EKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKV 346

Query: 449 CYTSLV 454
            Y+++V
Sbjct: 347 GYSAIV 352



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 4/191 (2%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D I Y  +L+   K    + A  + + M KR IE    AF  ++  + R GK+  A R+L
Sbjct: 133 DPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVL 192

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M K G++PD +     I             R L+ M+     P V TYN L+ G C  
Sbjct: 193 TMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDL 252

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
            +L++A  L+  M   G  PD I+Y  ++   CK    ++     +K+  +  L+ D   
Sbjct: 253 HRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVT 312

Query: 450 YTSLVSKSSKY 460
           Y + V   SK+
Sbjct: 313 YNTFVHMLSKH 323


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 163/331 (49%), Gaps = 31/331 (9%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+ + + +L+      G +  A  + +E    G    AV   TL+ G C A  + E    
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M      PDV TY+AL++ LCK  + D+A+ +L EM  RG  P+ V F+TLIDG CK
Sbjct: 67  FRAM-AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 247 NGRIDMAGDMKE------------------------------ARKIVDEMCTNGLNPDKI 276
            G  + A  + E                              A K++  +   G  P  +
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 185

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            + ++++GFCK  DL+SA  + + MI++G   +   FT LI+G C+  +V EA+++L +M
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 245

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +  G  P+  TY+ VI+  CK G     + L + M      P V T+N L++GLCK  ++
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRI 305

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           + A  L   M + G  PD ITYN L++G CK
Sbjct: 306 EEARQLYHRMRETGCAPDIITYNSLIDGLCK 336



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 209/468 (44%), Gaps = 90/468 (19%)

Query: 37  KGMGSSASLFASI-----LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91
           +G  S+  L  +I     +++ G     +V   LM    D G + +A++ FR + K    
Sbjct: 17  RGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD--- 73

Query: 92  IPARGCRCLIDRMMRTNLPTV---------TLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142
                  C  D M  T L              G   E++  G +P    F+ L+  LCK 
Sbjct: 74  -------CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKF 126

Query: 143 GKIKDAQMVFDEFGKRGL------------------------------------HATAVS 166
           G  + A  V ++  +RG+                                      T + 
Sbjct: 127 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 186

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           FN +ING CKAK+LD  ++L  VM   G  P+V+T++ LI GLCK NR+ +A+ LL +M 
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-----------------------------K 257
             G +PN V ++T+I+G CK G++D A ++                             +
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 306

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN-VAFTAL 316
           EAR++   M   G  PD ITY  L+DG CK   ++ A  + + + + G+   N V ++ L
Sbjct: 307 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 366

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
             G+   G++ +A R+   ++  G  PD ATYT +I  +CK         L++EM S G 
Sbjct: 367 FHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF 426

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            P V T +A++ GL +    + A  L D+M   G   D + YN+++EG
Sbjct: 427 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 474



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 222/462 (48%), Gaps = 33/462 (7%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI-V 68
           +ST++  L       QA  +L  ++ ++GMG+S + F +I++        + L + ++ V
Sbjct: 116 FSTLIDGLCKFGSEEQAFRVLEDVI-QRGMGNSDAAFETIIQRLCNKYNSVELASKVLGV 174

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-DYGYSP 127
            +  GF    +  F L+   + +         +D   +           LE++ + G  P
Sbjct: 175 VIAKGFTPTVLM-FNLVINGFCKAKD------LDSAYK----------LLEVMIEKGCVP 217

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V+ F +L+  LCK  ++ +AQ + ++    G     V+++T+ING CK   +D+ + L 
Sbjct: 218 NVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELF 277

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +ME     P+V T++ LI+GLCK  R+++A  L H M E G  P+ + + +LIDG CK+
Sbjct: 278 QLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKS 337

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            ++D      EA ++   +  +G++  + +TY+ L  G+   G +  A  I   ++ +G 
Sbjct: 338 FQVD------EAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 391

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D   +T+LI  +C+  + VE   ++ EM   G  P   T + V+    +   T+   +
Sbjct: 392 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQ 451

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML---DLGVVPDDITYNILLE 423
           L   M + G       YN ++ G+ +  +   A  +L+ ++   D    P     + L+E
Sbjct: 452 LFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVE 511

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQ 462
             C+ G  +D  +L    SE+G  +  + Y  L+S  S+ ++
Sbjct: 512 SLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQR 553



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 170/385 (44%), Gaps = 39/385 (10%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G +DDA + F+L+ +            LID + +          Y  + + G +P +  +
Sbjct: 268 GQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITY 327

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVME 191
           N L+  LCK  ++ +A  +F    + G+ A  AV+++TL +G+     + +  R+ S++ 
Sbjct: 328 NSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLV 387

Query: 192 GSGMRPDVYTYSALINGLCKENR-----------------------------------LD 216
             G  PD+ TY++LI   CK +R                                    +
Sbjct: 388 DKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTE 447

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  L   M  RG T + +I+  +++G  +  + + A  + E  +++D+      NP   
Sbjct: 448 RAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLE--QVIDKR-DRKFNPSSS 504

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
               L++  C+ G  + A  +  +M +RG      ++  L+SG  R  +  EA ++   M
Sbjct: 505 AVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAM 564

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +  G  P+ +T  +VI   C        + L++ M   G  P +ET N L+ G CK G+ 
Sbjct: 565 VSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRA 624

Query: 397 KNANMLLDTMLDLGVVPDDITYNIL 421
             A  LL+ M + G+ P+D T+++L
Sbjct: 625 DLARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 1/158 (0%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+K TY IL+ GF   GDL+ A+ + +EM   G E + V  T L+ G C  G+VVEA   
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            R M K    PD  TYT ++   CK G       +L+EM + G  P   T++ L++GLCK
Sbjct: 67  FRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
            G  + A  +L+ ++  G+   D  +  +++  C   N
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN 163


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 196/424 (46%), Gaps = 51/424 (12%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           ++ K G    A  F   ++  G     +  ++L+  Y DL  ++DA++    L       
Sbjct: 279 VLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGL------- 331

Query: 93  PARGC-----------------------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           P++GC                       +CL+++M               + +    P  
Sbjct: 332 PSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKM---------------VWNSNLIPDQ 376

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             +N L+H L K G   DA     E   +G H   V ++ +++  C+   +DE   L   
Sbjct: 377 VTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVID 436

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M   G  PDV TY+A+++G C+  R+D+A+ +L +M + G  PN V +T L++G C +G+
Sbjct: 437 MYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGK 496

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                   EAR++++    +   P+ ITY  ++ G  +EG L  A D+ +EM+++G    
Sbjct: 497 ------SLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPT 550

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V    LI   C+  KVVEA++ L E L  G   +   +T VI  FC+ GD +    +L 
Sbjct: 551 PVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLD 610

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P   TY AL + L K G+L  A  L+  ML  G+ P  +TY  ++  + + G
Sbjct: 611 DMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWG 670

Query: 430 NPED 433
             +D
Sbjct: 671 RVDD 674



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 191/404 (47%), Gaps = 13/404 (3%)

Query: 33  IVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92
           ++SK  +   A     ++  RG   P      +M+ Y   G L +A++   L++K     
Sbjct: 209 VLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEP 268

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
               C   I  +++       L F   +   G  P +  +N L+   C   +I+DA  + 
Sbjct: 269 SLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELI 328

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME----GSGMRPDVYTYSALING 208
                +G     VS+ T++   CK K ++E   +K +ME     S + PD  TY+ LI+ 
Sbjct: 329 AGLPSKGCPPDKVSYYTVMGFLCKEKKIEE---VKCLMEKMVWNSNLIPDQVTYNTLIHM 385

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           L K    DDA   L E  ++G   + V ++ ++   C+ GR+D      EA+ +V +M +
Sbjct: 386 LSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMD------EAKSLVIDMYS 439

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G NPD +TYT ++DGFC+ G ++ A  I ++M K G + + V++TAL++G C  GK +E
Sbjct: 440 RGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLE 499

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  M+    +    P+  TY  V+    + G       L +EM   G  P     N L+ 
Sbjct: 500 AREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQ 559

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            LC++ ++  A   L+  L+ G   + + +  ++ G C+ G+ E
Sbjct: 560 SLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDME 603



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 186/421 (44%), Gaps = 24/421 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y T++ FL   K   + + L+  +V    +      + +++     H            
Sbjct: 342 SYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKH------------ 389

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G  DDA+   +  +   F I   G   ++    +           +++   G +P 
Sbjct: 390 ----GHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPD 445

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  ++   C+ G+I +A+ +  +  K G     VS+  L+NG C +    E   + +
Sbjct: 446 VVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMIN 505

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V E     P+  TY A+++GL +E +L +A  L  EM E+G  P  V    LI   C+N 
Sbjct: 506 VSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQ 565

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++       EA+K ++E    G   + + +T ++ GFC+ GD+E+AL +  +M   G   
Sbjct: 566 KV------VEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHP 619

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V +TAL     + G++ EA  ++ +ML  GL P   TY  VI  + + G       LL
Sbjct: 620 DAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLL 679

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           ++M      P    YN ++  LC  G L+ A  LL  +L      D  T ++L+E + K 
Sbjct: 680 EKMLK--RQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKK 737

Query: 429 G 429
           G
Sbjct: 738 G 738



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 167/361 (46%), Gaps = 33/361 (9%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           FY     + YS    V+  ++  L K    + A+ V     +RG+     +F  ++  + 
Sbjct: 187 FYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYS 246

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +A  L    R+ ++M+ +G+ P +   +  I  L K  +L+ A   L  M   G+ P+ V
Sbjct: 247 RAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIV 306

Query: 236 IFTTLIDGHCKNGRID-----MAG------------------------DMKEARKIVDEM 266
            + +LI G+C   RI+     +AG                         ++E + ++++M
Sbjct: 307 TYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKM 366

Query: 267 CTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
             N  L PD++TY  L+    K G  + AL   KE   +G  +D V ++A++  FC+ G+
Sbjct: 367 VWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGR 426

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + EA+ ++ +M   G  PD  TYT ++D FC+ G      ++L++M   G  P   +Y A
Sbjct: 427 MDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTA 486

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKG 442
           L+NGLC  G+   A  +++   +    P+ ITY  ++ G  + G      D  +   EKG
Sbjct: 487 LLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKG 546

Query: 443 L 443
            
Sbjct: 547 F 547



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 4/189 (2%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           + Y  +LD   K    + A  + + M +RGIE    AF  ++  + R GK+  A R+L  
Sbjct: 201 VVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTL 260

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M K G++P  +     I    K G  +   + L+ M+  G  P + TYN+L+ G C   +
Sbjct: 261 MQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNR 320

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYT 451
           +++A  L+  +   G  PD ++Y  ++   CK    E+     +K+     L+ D   Y 
Sbjct: 321 IEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYN 380

Query: 452 SLVSKSSKY 460
           +L+   SK+
Sbjct: 381 TLIHMLSKH 389


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 213/450 (47%), Gaps = 49/450 (10%)

Query: 57  LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +V   +++  Y   G L+ A++  R + +            L+D   RT       G
Sbjct: 408 LPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAG 467

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           FY E+  +G   +  +F++L++ L + G +K+AQ +  +   +G++    ++++L++G+ 
Sbjct: 468 FYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYF 527

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  N      +   M    M+ DV  Y+AL  GL +  + +   +    M E GLTP+ V
Sbjct: 528 KEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPKSVF-SRMIELGLTPDCV 586

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE--- 292
            + ++++ +   G+ + A D+      ++EM + G+ P+ +TY IL+ G CK G +E   
Sbjct: 587 TYNSVMNTYFIQGKTENALDL------LNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVI 640

Query: 293 --------------------------------SALDIRKEMIKRGIELDNVAFTALISGF 320
                                           + L I K+++  G+ L+ + +  LI+  
Sbjct: 641 SVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVL 700

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           CR G   +A  +L EM+  G+  D  TY  +I  +C     +  F    +M   G  P +
Sbjct: 701 CRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNI 760

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            TYNAL+ GL  +G +++A+ L+  M + G+VP+  TYNIL+ GH + GN  D  KL  E
Sbjct: 761 TTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCE 820

Query: 441 ---KGLVSDYACYTSLV---SKSSKYRQKR 464
              KG +     Y  L+   +K+ K RQ R
Sbjct: 821 MITKGFIPTTGTYNVLIQDYAKAGKMRQAR 850



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 216/471 (45%), Gaps = 53/471 (11%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           K+G+        S +  +G     +  + L+  Y  +G +  A      L      + A 
Sbjct: 87  KRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAI 146

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           G   L+D      L +  L    +    G  P +  +N L++  CK G +  A+ V +E 
Sbjct: 147 GLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEI 206

Query: 156 ---------------------GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
                                G R L  T V++ TLI  +CK + +D+ F L   M  SG
Sbjct: 207 LGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSG 266

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR----- 249
           + PDV T S+++ GLC+  +L +A +LL EM   GL PN V +TT+I    K+GR     
Sbjct: 267 VMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAF 326

Query: 250 ------------IDM------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
                       ID+            AG  KEA ++   +    L P+ +TYT LLDG 
Sbjct: 327 NHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGH 386

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK GD+E A  + ++M K  +  + V F+++I+G+ + G + +A  +LR+M+++ + P+ 
Sbjct: 387 CKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNV 446

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             Y +++D + + G  +      KEM+S G       ++ L+N L + G +K A  L+  
Sbjct: 447 FVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKD 506

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSL 453
           +L  G+  D   Y+ L++G+ K GN        +  +EK +  D   Y +L
Sbjct: 507 ILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNAL 557



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 181/373 (48%), Gaps = 33/373 (8%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
              Y +++  G  P V   + +++ LC+ GK+ +A M+  E    GL    VS+ T+I+ 
Sbjct: 256 FSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISA 315

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
             K+  + E F  +S M   G+  D+   + +++GL K  +  +AE +   + +  L PN
Sbjct: 316 LLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPN 375

Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
            V +T L+DGHCK G ++ A                             G + +A +++ 
Sbjct: 376 CVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLR 435

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           +M    + P+   Y ILLDG+ + G  E+A    KEM   G+E +N+ F  L++   R G
Sbjct: 436 KMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSG 495

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            + EA+ +++++L  G+  D   Y+ ++D + K G+      +++EM        V  YN
Sbjct: 496 GMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYN 555

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK--- 441
           AL  GL + G+ +  + +   M++LG+ PD +TYN ++  +   G  E+   L +E    
Sbjct: 556 ALTKGLLRLGKYEPKS-VFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSY 614

Query: 442 GLVSDYACYTSLV 454
           G++ +   Y  L+
Sbjct: 615 GVMPNMVTYNILI 627



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 170/378 (44%), Gaps = 77/378 (20%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-----QMVFDEFGKRGLHATAVSFNTL 170
            Y E++  G  P+V+  N+L+H LCK G +  A       VFD           V++NT+
Sbjct: 32  LYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYLRNSVFDH----------VTYNTV 81

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           + G CK    D+GF L S M   G+  D  T + L+ G C+   +  AE ++  +   G+
Sbjct: 82  VWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLVGGGV 141

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
             + +   TL+DG+C+ G +  A D+      V++   NG+ PD +TY  L++ FCK GD
Sbjct: 142 PLDAIGLNTLVDGYCEVGLVSRALDL------VEDGWKNGVKPDIVTYNTLVNAFCKRGD 195

Query: 291 LESALDIRKEMIK---------------------RGIELDNVAFTALIS----------- 318
           L  A  +  E++                      R ++   V +T LI+           
Sbjct: 196 LAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDF 255

Query: 319 ------------------------GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
                                   G CR GK+ EA  +LREM  +GL P+  +YT +I  
Sbjct: 256 FSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISA 315

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
             K+G     F    +M   G    +     +M+GL K G+ K A  +  T+L L +VP+
Sbjct: 316 LLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPN 375

Query: 415 DITYNILLEGHCKHGNPE 432
            +TY  LL+GHCK G+ E
Sbjct: 376 CVTYTALLDGHCKVGDVE 393



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 195/410 (47%), Gaps = 10/410 (2%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LL+ +    GM  + SL   IL ++G +L      +LM  Y   G    A+   + + + 
Sbjct: 487 LLNNLKRSGGMKEAQSLIKDIL-SKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEK 545

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
             +        L   ++R          +  +++ G +P    +N +M+    +GK ++A
Sbjct: 546 DMQFDVVAYNALTKGLLRLG-KYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENA 604

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             + +E    G+    V++N LI G CK   +++   +   M   G  P    +  L+  
Sbjct: 605 LDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKA 664

Query: 209 LCKENRLDDAELLLHE-MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
             + +R  DA L +H+ + + GL  N +++ TLI   C+       G  K+A  ++ EM 
Sbjct: 665 YSR-SRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCR------LGMTKKANVVLTEMV 717

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
             G++ D +TY  L+ G+C    +E A +   +M+  GI  +   + AL+ G    G + 
Sbjct: 718 IKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMR 777

Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
           +A++++ EM + GL P+  TY +++    + G+ +   +L  EM + G +P   TYN L+
Sbjct: 778 DADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLI 837

Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
               K G+++ A  LL+ ML  G +P+  TY++L+ G CK     + D+L
Sbjct: 838 QDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRL 887



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 197/422 (46%), Gaps = 10/422 (2%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95
           + G   +A+ F   +++ G     ++ D L+      G + +A    + +      +   
Sbjct: 458 RTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVF 517

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
               L+D   +    +  L    E+ +      V  +N L   L + GK  + + VF   
Sbjct: 518 NYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKY-EPKSVFSRM 576

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + GL    V++N+++N +      +    L + M+  G+ P++ TY+ LI GLCK   +
Sbjct: 577 IELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAI 636

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           +    +LHEM   G  P  +I   L+  + ++ + D    ++  +K+VD     GLN ++
Sbjct: 637 EKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAI--LQIHKKLVDM----GLNLNQ 690

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           + Y  L+   C+ G  + A  +  EM+ +GI  D V + ALI G+C G  V +A     +
Sbjct: 691 MVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQ 750

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ML  G+ P+  TY  +++    NG  +   +L+ EMR  G +P   TYN L++G  + G 
Sbjct: 751 MLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGN 810

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
            +++  L   M+  G +P   TYN+L++ + K G      +L +E   +G + + + Y  
Sbjct: 811 KRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDV 870

Query: 453 LV 454
           L+
Sbjct: 871 LI 872



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
           + L+    R+      L  + +++D G + +  V+N L+  LC+ G  K A +V  E   
Sbjct: 659 KFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVI 718

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           +G+ A  V++N LI G+C   ++++ F   S M  SG+ P++ TY+AL+ GL     + D
Sbjct: 719 KGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRD 778

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A+ L+ EM ERGL PN   +  L+ GH   GR+   G+ +++ K+  EM T G  P   T
Sbjct: 779 ADKLVSEMRERGLVPNATTYNILVSGH---GRV---GNKRDSIKLYCEMITKGFIPTTGT 832

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC------------RGGK 325
           Y +L+  + K G +  A ++  EM+ RG   ++  +  LI G+C            +   
Sbjct: 833 YNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLKLSY 892

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             EA+++LREM + G  P ++T   +   F   G      RLLK
Sbjct: 893 QNEAKKLLREMCEKGHVPSESTLMYISSNFSAPGKRDDAKRLLK 936



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 163/337 (48%), Gaps = 36/337 (10%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE--GF 184
           PS+ ++N L+++    G +   ++++ E    G+     S N L++  CK  +L    G+
Sbjct: 8   PSLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGY 67

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
              SV        D  TY+ ++ G CK    D    LL EM ++G+  + V    L+ G+
Sbjct: 68  LRNSVF-------DHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGY 120

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C+ G +      + A  I+  +   G+  D I    L+DG+C+ G +  ALD+ ++  K 
Sbjct: 121 CQIGLV------QYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKN 174

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKV---------------------GLKP 343
           G++ D V +  L++ FC+ G + +AE ++ E+L                        L+P
Sbjct: 175 GVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQP 234

Query: 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
              T+T +I  +CK+      F L ++M   G +P V T ++++ GLC+HG+L  A MLL
Sbjct: 235 TVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLL 294

Query: 404 DTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             M ++G+ P+ ++Y  ++    K G   +    QS+
Sbjct: 295 REMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQ 331



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 148/335 (44%), Gaps = 47/335 (14%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+  YG  P++  +N+L+  LCK G I+    V  E    G   T +    L+  + +++
Sbjct: 610 EMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSR 669

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             D   ++   +   G+  +   Y+ LI  LC+      A ++L EM  +G++ + V + 
Sbjct: 670 KADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYN 729

Query: 239 TLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTN 269
            LI G+C    ++ A                             G M++A K+V EM   
Sbjct: 730 ALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRER 789

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL P+  TY IL+ G  + G+   ++ +  EMI +G       +  LI  + + GK+ +A
Sbjct: 790 GLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQA 849

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCK---------------NGDTKTGFRLLKEMRSD 374
             +L EML  G  P+ +TY ++I  +CK                 + K   +LL+EM   
Sbjct: 850 RELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLKLSYQNEAK---KLLREMCEK 906

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
           GH+P+  T   + +     G+  +A  LL T++ L
Sbjct: 907 GHVPSESTLMYISSNFSAPGKRDDAKRLLKTVIGL 941



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 37/290 (12%)

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M    + P +  ++ L+        +   ++L  EM   G+ PN      L+   CK G 
Sbjct: 1   MRALSLVPSLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGD 60

Query: 250 IDMA-GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           + +A G ++ +              D +TY  ++ GFCK G  +    +  EM+K+G+  
Sbjct: 61  LGLALGYLRNSVF------------DHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCF 108

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D+V    L+ G+C+ G V  AE ++  ++  G+  D      ++D +C+ G       L+
Sbjct: 109 DSVTCNILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLV 168

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML------------DLGV----- 411
           ++   +G  P + TYN L+N  CK G L  A  +++ +L            D GV     
Sbjct: 169 EDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDG 228

Query: 412 ----VPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
                P  +T+  L+  +CKH   +DF  L  +    G++ D    +S++
Sbjct: 229 LRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSIL 278


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 179/332 (53%), Gaps = 12/332 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V + N L+  LC+ G+  DA  V +  G     ATA ++  L++G+C+A  L++  R+
Sbjct: 94  PDVPLANRLVRDLCRRGRPADAARVVEACGP---EATAATYGALVDGYCRAGLLEDARRV 150

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M         Y ++ LI+ LC+  R+ DA ++L  M  RG  P+ V +  L+   CK
Sbjct: 151 VGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACK 210

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR       ++A +++D M   G  P+ +TY +++D  C+EGD++ A ++   +  RG 
Sbjct: 211 -GR-----GYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGC 264

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           + + V +  ++ GFC   + V+A+ +L EM++    P++AT  ++I+  C+ G  +    
Sbjct: 265 KPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTL 324

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
            L++M   G    V TYNA+++G+C+ G + +A  LL  M   G  PD +TYN +L+G C
Sbjct: 325 YLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLC 384

Query: 427 KHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
                ED ++L    S+   + D + + +++S
Sbjct: 385 SADRWEDAEELMIKMSQNDRLPDNSTFNTIIS 416



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 163/340 (47%), Gaps = 11/340 (3%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S Y  N L+H LC+ G++ DA +V D    RG     V++N L+   CK +   +   L 
Sbjct: 162 SAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELI 221

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G  P+  TY+ +I+ +C+E  +D A  LL+ +  RG  PN V + T++ G C  
Sbjct: 222 DFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSI 281

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            R        +A +I+DEM      P++ T  ++++  C++G L+      ++M K G  
Sbjct: 282 ER------WVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCT 335

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V + A+ISG C  G V  A  +L  M   G KPD  TY  V+   C     +    L
Sbjct: 336 ANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEEL 395

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           + +M  +  LP   T+N +++  C+ G +  A  +   M + G  P+  TY+ ++ G  K
Sbjct: 396 MIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTK 455

Query: 428 HGNPEDFDKLQSE---KGLVSD--YACYTSLVSKSSKYRQ 462
            G  E   +L +E   KG  +D  Y   T  ++K  K  +
Sbjct: 456 AGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEE 495



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 165/340 (48%), Gaps = 24/340 (7%)

Query: 92  IPARGCRCLIDRMMRTNLPTVTLGFYL--------EILDY----GYSPSVYVFNVLMHKL 139
           +P+RGC+         N  TV  GF          EILD        P+    NV+++ L
Sbjct: 259 LPSRGCK-----PNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTL 313

Query: 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
           C++G ++   +  ++  K G  A  V++N +I+G C+  N+D    L S M+  G +PD+
Sbjct: 314 CRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDI 373

Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259
            TY+ ++ GLC  +R +DAE L+ +M +    P++  F T+I   C+ G I       +A
Sbjct: 374 VTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLI------LQA 427

Query: 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
            ++  +M   G NP+  TY+ ++ G  K G +E AL++  EM  +G   D + +  L   
Sbjct: 428 FEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKM-YRVLTES 486

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
             +  K+ E  +++ ++   G+ P    Y  V+   C+NG T     +L +M S G +P 
Sbjct: 487 LNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPD 546

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             TY  L+ GL   G  K A  LL  +    V+ + +  N
Sbjct: 547 ESTYIILIEGLFYEGYSKEARELLSRLCSRDVLSNSLIKN 586



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 157/345 (45%), Gaps = 44/345 (12%)

Query: 118 LEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE++D+    G  P+   +NV++  +C+EG +  A+ + +    RG     V++NT++ G
Sbjct: 218 LELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 277

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C  +   +   +   M      P+  T + +IN LC++  L    L L +M + G T N
Sbjct: 278 FCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTAN 337

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V +  +I G C+ G +D       A +++  M + G  PD +TY  +L G C     E 
Sbjct: 338 VVTYNAVISGMCEQGNVD------SALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWED 391

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A ++  +M +     DN  F  +IS +C+ G +++A  + ++M + G  P+  TY+ +I 
Sbjct: 392 AEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIG 451

Query: 354 CFCKNGDTKTGFRLLKEM----------------------------------RSDGHLPA 379
              K G  +    LL EM                                  +  G  P 
Sbjct: 452 GLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQ 511

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
              YN ++ GLC++G+   A  +L  M+  G +PD+ TY IL+EG
Sbjct: 512 TVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEG 556



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 150/324 (46%), Gaps = 40/324 (12%)

Query: 100 LIDRMMRTNLPT--VTLG----------------FYLEILD-YGYSPSVYVFNVLMHKLC 140
           ++D M+R N P    TL                  YLE +  +G + +V  +N ++  +C
Sbjct: 290 ILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMC 349

Query: 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200
           ++G +  A  +       G     V++NT++ G C A   ++   L   M  +   PD  
Sbjct: 350 EQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNS 409

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           T++ +I+  C++  +  A  +  +M E+G  PN   ++T+I G  K      AG M++A 
Sbjct: 410 TFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTK------AGKMEQAL 463

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           ++++EM   G N DK+ Y +L +   KE  +E  + +  ++   GI    V +  ++ G 
Sbjct: 464 ELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGL 522

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
           CR GK   A  +L +M+  G  PD++TY ++I+     G +K    LL  + S       
Sbjct: 523 CRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLCS------- 575

Query: 381 ETYNALMNGLCKHGQLKNANMLLD 404
              + L N L     +KN  +LLD
Sbjct: 576 --RDVLSNSL-----IKNEALLLD 592


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 158/301 (52%), Gaps = 7/301 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +V+N L+  L K+ ++ +A  +F E+          +FN LI G C+   +D  F +   
Sbjct: 144 FVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKD 203

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNG 248
           ME  G  PDV TY+ LINGLCK N +     L  E+  R   +P+ V +T++I G CK+G
Sbjct: 204 MESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSG 263

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +      MKEA  + +EM  +G+ P+ IT+ +L+DGF K G++  A  + ++M       
Sbjct: 264 K------MKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSA 317

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V FT+LI G+CR G+V    +    M    + P   TY ++I+  CK          L
Sbjct: 318 DVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFL 377

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            ++++   +P    YN +++G CK G +   N++L  M +    PD +T+ IL+ GHC  
Sbjct: 378 GQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVK 437

Query: 429 G 429
           G
Sbjct: 438 G 438



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 162/335 (48%), Gaps = 7/335 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+  +++ N     +  + E L     P  + FN+L+  LC+ G +  A  VF +    G
Sbjct: 149 LLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFG 208

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                V++NTLING CKA  +  G  L K +   S   PD+ TY+++I+G CK  ++ +A
Sbjct: 209 CLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEA 268

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
             L  EM   G+ PN + F  LIDG    G+I   G++ EA  +  +M     + D +T+
Sbjct: 269 SNLFEEMMRSGIQPNVITFNVLIDGF---GKI---GNIAEAEAMYRKMAYFDCSADVVTF 322

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           T L+DG+C+ G +   L     M  R +      +  LI+  C+  ++ EA   L ++  
Sbjct: 323 TSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKN 382

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
             + P    Y  VID FCK G+   G  +LKEM      P   T+  L+ G C  G++  
Sbjct: 383 SSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFE 442

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           A  + + ML     PD+IT N L+    K G P +
Sbjct: 443 AINIFNRMLATRCAPDNITVNSLISCLLKAGMPNE 477



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 178/390 (45%), Gaps = 48/390 (12%)

Query: 106 RTNLPTVTLGFYLEI--LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           R N P V   F LE   L+   +     +N+LM  LC+ G      +VFD  G  G    
Sbjct: 49  RFNNPKVGFKF-LEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPD 107

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR--------------------------- 196
           +     L+    +A + D   +L + ++G  +R                           
Sbjct: 108 SKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFK 167

Query: 197 --------PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
                   PD +T++ LI GLC+   +D A  +  +M   G  P+ V + TLI+G CK  
Sbjct: 168 EYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKAN 227

Query: 249 RIDMAGDM-KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
            +    ++ KE +   D  C+    PD +TYT ++ GFCK G ++ A ++ +EM++ GI+
Sbjct: 228 EVQRGCELFKEIQSRSD--CS----PDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQ 281

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + + F  LI GF + G + EAE M R+M       D  T+T +ID +C+ G    G + 
Sbjct: 282 PNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKF 341

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
              M++    P V TY  L+N LCK  +L  A   L  + +  ++P    YN +++G CK
Sbjct: 342 WNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCK 401

Query: 428 HGNPEDFD---KLQSEKGLVSDYACYTSLV 454
            GN ++ +   K   EK    D   +T L+
Sbjct: 402 AGNVDEGNVILKEMEEKRCDPDKVTFTILI 431



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E++  G  P+V  FNVL+    K G I +A+ ++ +       A  V+F +LI+G+C+
Sbjct: 272 FEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCR 331

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           A  ++ G +  +VM+   + P VYTY+ LIN LCKENRL++A   L ++    + P   +
Sbjct: 332 AGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFM 391

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +  +IDG CK G +D      E   I+ EM     +PDK+T+TIL+ G C +G +  A++
Sbjct: 392 YNPVIDGFCKAGNVD------EGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAIN 445

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
           I   M+      DN+   +LIS   + G   EA R+ +  L+
Sbjct: 446 IFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRKMALE 487



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 7/193 (3%)

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY +L+   C+ G  +    +   M   G   D+     L++   +       +++L E+
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
               ++ +   Y  ++    K         L KE       P   T+N L+ GLC+ G +
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGV 194

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTS 452
             A  +   M   G +PD +TYN L+ G CK        E F ++QS      D   YTS
Sbjct: 195 DRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTS 254

Query: 453 LVS---KSSKYRQ 462
           ++S   KS K ++
Sbjct: 255 IISGFCKSGKMKE 267



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 54/119 (45%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + + N       F  +I +    P  +++N ++   CK G + +  ++  E  ++ 
Sbjct: 360 LINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKR 419

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
                V+F  LI GHC    + E   + + M  +   PD  T ++LI+ L K    ++A
Sbjct: 420 CDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEA 478


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 210/453 (46%), Gaps = 57/453 (12%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113
           G  +       L+  Y  +  ++ A++ F +++    +        ++  M+R  +  + 
Sbjct: 121 GFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLA 180

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LG Y  +L     P++  F++L+  +CK GK ++A  +FDE  +R +    +++  +I+G
Sbjct: 181 LGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISG 240

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+A+  D  +RL   M+  G  PD  TY+AL++G CK  R+D+A  LL    +     +
Sbjct: 241 LCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLD 300

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
              ++ LIDG  +  R +      +A+    +M  + + PD I YTI++ G  K G  + 
Sbjct: 301 KQGYSCLIDGLFRARRFE------DAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKD 354

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           AL +  EM +RG+  D   + ALI G+C  G + EA+ +  E+ K        TYT++I 
Sbjct: 355 ALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILIC 414

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML----------- 402
             C++G      ++  EM   G  P+V T+NAL++G CK G ++ A +L           
Sbjct: 415 GMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPS 474

Query: 403 -----------------LDTML--------------------DLGVVPDDITYNILLEGH 425
                            L TM+                    D G  P+ ITYNIL+ G 
Sbjct: 475 LFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGF 534

Query: 426 CKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           CK GN     KL  E   KGL  D   Y +L++
Sbjct: 535 CKAGNINGAFKLFKELQLKGLSPDSVTYGTLIN 567



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 21/336 (6%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V    ++ + D+G  P    +N L+H  CK G++ +A  +   F K         ++ LI
Sbjct: 249 VAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLI 308

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G  +A+  ++       M    ++PDV  Y+ ++ GL K  +  DA  LL+EM ERGL 
Sbjct: 309 DGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLV 368

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   +  LI G+C  G +D      EA+ +  E+  N       TYTIL+ G C+ G +
Sbjct: 369 PDTHCYNALIKGYCDLGLLD------EAKSLHLEISKNDCFSSACTYTILICGMCRSGLV 422

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-------- 343
             A  I  EM K G     V F ALI GFC+ G + +A+ +  +M ++G  P        
Sbjct: 423 GDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM-EIGRNPSLFLRLSQ 481

Query: 344 ------DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
                 D A+   +++  C +G     + +L ++   G  P + TYN L++G CK G + 
Sbjct: 482 GANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNIN 541

Query: 398 NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            A  L   +   G+ PD +TY  L+ G       ED
Sbjct: 542 GAFKLFKELQLKGLSPDSVTYGTLINGLLSANREED 577



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 11/347 (3%)

Query: 108 NLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           N P   LGF   I    +    S    N+++  L K+   +    V  E  + G   +A 
Sbjct: 68  NPPNSLLGFRFFIWASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISAD 127

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           +F  LI  + K   +++      +M+    +PDV+TY+ +++ + ++  +  A  + + M
Sbjct: 128 AFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRM 187

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
            +    PN   F+ LIDG CK+G+       + A ++ DEM    + P+KITYTI++ G 
Sbjct: 188 LKLNCLPNIATFSILIDGMCKSGKT------QNALQMFDEMTQRRILPNKITYTIIISGL 241

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           C+    + A  +   M   G   D+V + AL+ GFC+ G+V EA  +L+   K     D 
Sbjct: 242 CQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDK 301

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
             Y+ +ID   +    +      ++M      P V  Y  +M GL K G+ K+A  LL+ 
Sbjct: 302 QGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNE 361

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTS 452
           M + G+VPD   YN L++G+C  G  ++   L  E   +S   C++S
Sbjct: 362 MTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLE---ISKNDCFSS 405



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 115/268 (42%), Gaps = 45/268 (16%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYV 131
           G + DA Q F  + KH           LID   +  N+    L FY   ++ G +PS+++
Sbjct: 420 GLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYK--MEIGRNPSLFL 477

Query: 132 --------------FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
                            ++ +LC  G I  A  +  +    G     +++N LI+G CKA
Sbjct: 478 RLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKA 537

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
            N++  F+L   ++  G+ PD  TY  LINGL   NR +DA  +L ++ + G TP   ++
Sbjct: 538 GNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVY 597

Query: 238 TTLIDGHCKNGRIDMA------------GDMKEARKIVDEMCTNG--------------- 270
            + +   C+  +I +A            G   E  K V+E    G               
Sbjct: 598 KSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFK 657

Query: 271 LNPDKIT-YTILLDGFCKEGDLESALDI 297
           LN  ++  YTI L G C+ G LE AL I
Sbjct: 658 LNDFQLAPYTIWLIGLCQAGRLEEALKI 685


>gi|326511761|dbj|BAJ92025.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 176/368 (47%), Gaps = 16/368 (4%)

Query: 5   LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
           LT    S ++  L+    H    +LLH ++       +A L A I   RGT      +D 
Sbjct: 81  LTPRRSSELLASLLPSVSHQAFPELLHHLIL------TARLAAGI---RGTGAAAPAIDV 131

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L         L  A   FR +R H        C   I   +    P + + F+ E+    
Sbjct: 132 LFSACARGNKLSQATLTFRAMRAHGLLPRVESCNVFISAALCLKRPEIAVSFFREMRRCR 191

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK-NLDEG 183
            SP++Y  N+L+   C  G++ DA MV DE    G+  T VSFNTLI  +C+    L+  
Sbjct: 192 ISPNMYTANMLLRAFCALGRVADAAMVLDEMPDWGVDRTVVSFNTLIAAYCREHGGLEHA 251

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             LK  ME  G+ P   TY+ +I+GLCKE R+  A  LL EM    + PN V F TLI G
Sbjct: 252 LELKKRMELEGLTPSELTYNTIIHGLCKEGRMRQANRLLSEMRAMRVVPNTVTFNTLIYG 311

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +       M GD     ++ +EM   G+  D +TY  L+ G C++G ++ A  + +++ +
Sbjct: 312 YV------MHGDNGTTSRVHEEMVKKGVELDIVTYNALILGLCRDGKIKKAEHLFQQLDR 365

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             +E +   F+ALI G C+      A ++L  M K G  P+  TY +VI  FCKN D + 
Sbjct: 366 PKLEPNASTFSALILGHCKTQNSERALQLLNVMKKSGFHPNYDTYKIVISTFCKNKDFEG 425

Query: 364 GFRLLKEM 371
              ++KE+
Sbjct: 426 AVDVMKEL 433



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 14/225 (6%)

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
           DV+F+      C  G       + +A      M  +GL P   +  + +         E 
Sbjct: 130 DVLFSA-----CARG-----NKLSQATLTFRAMRAHGLLPRVESCNVFISAALCLKRPEI 179

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A+   +EM +  I  +      L+  FC  G+V +A  +L EM   G+     ++  +I 
Sbjct: 180 AVSFFREMRRCRISPNMYTANMLLRAFCALGRVADAAMVLDEMPDWGVDRTVVSFNTLIA 239

Query: 354 CFCK-NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            +C+ +G  +    L K M  +G  P+  TYN +++GLCK G+++ AN LL  M  + VV
Sbjct: 240 AYCREHGGLEHALELKKRMELEGLTPSELTYNTIIHGLCKEGRMRQANRLLSEMRAMRVV 299

Query: 413 PDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           P+ +T+N L+ G+  HG+     ++  E   KG+  D   Y +L+
Sbjct: 300 PNTVTFNTLIYGYVMHGDNGTTSRVHEEMVKKGVELDIVTYNALI 344



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 77/143 (53%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G    +  +N L+  LC++GKIK A+ +F +  +  L   A +F+ LI GHCK +
Sbjct: 327 EMVKKGVELDIVTYNALILGLCRDGKIKKAEHLFQQLDRPKLEPNASTFSALILGHCKTQ 386

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           N +   +L +VM+ SG  P+  TY  +I+  CK    + A  ++ E+ E  + P+ V+  
Sbjct: 387 NSERALQLLNVMKKSGFHPNYDTYKIVISTFCKNKDFEGAVDVMKELLEMRMAPDKVLLH 446

Query: 239 TLIDGHCKNGRIDMAGDMKEARK 261
              +   K  ++ +A D++ A K
Sbjct: 447 EFFEALSKAKKLHLAEDLQSADK 469


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 168/311 (54%), Gaps = 6/311 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+  +G  P  Y++ VL+  LCK G+  +A+ +FD   ++G+      +  L++G+    
Sbjct: 262 EMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEG 321

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L E      +M G+G+ PD + ++ +     K+  +D+A  +  +M ++ L+PN V + 
Sbjct: 322 SLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYG 381

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LID  CK GR+D      +A    ++M   G+ PD   ++ L+ G C     E A ++ 
Sbjct: 382 ALIDALCKLGRVD------DAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELF 435

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            E++ +GI LD V F  L+   CR G+V+EA+R++  ML+VG++PD  +Y  ++D  C  
Sbjct: 436 FEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLT 495

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G      +LL  + S G  P   TYN L++G CK  ++ +A  L   ML  G+ PD +TY
Sbjct: 496 GRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTY 555

Query: 419 NILLEGHCKHG 429
           N +L G  + G
Sbjct: 556 NTILHGLFQTG 566



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 213/434 (49%), Gaps = 27/434 (6%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           + Y+ ++ +L  +   ++AR++   ++ +KG+  + +++  +L    T      + + + 
Sbjct: 273 YIYAVLLDYLCKNGRCTEARNIFDSVI-RKGIKPNVTIYGILLHGYATEGSLSEMHSFLD 331

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           + V  G   D          H F I   A   + +ID  M           + ++     
Sbjct: 332 LMVGNGVSPD---------HHIFNIMFCAYAKKAMIDEAMH---------IFDKMRQQRL 373

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP++  +  L+  LCK G++ DA + F++    G+      F++L+ G C     ++   
Sbjct: 374 SPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEE 433

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   +   G+R D   ++ L+  LC+E R+ +A+ L+  M   G+ P+ + + TL+DGHC
Sbjct: 434 LFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHC 493

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             GRID      EA K++D + + GL PDK+TY  LL G+CK   ++ A  + +EM+ +G
Sbjct: 494 LTGRID------EAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKG 547

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  D V +  ++ G  + G+  EA+ +   M+    + +  TY ++I+  CKN      F
Sbjct: 548 LTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAF 607

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           ++   + S      + T N ++  L K G+ ++A  L  T+   G+VPD  TY ++ E  
Sbjct: 608 KMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENL 667

Query: 426 CKHGNPEDFDKLQS 439
            K G+ E+ D+L S
Sbjct: 668 IKEGSLEELDELFS 681



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 144/291 (49%), Gaps = 6/291 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+LD G       FN LM  LC+EG++ +AQ + D   + G+    +S+NTL++GHC
Sbjct: 434 LFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHC 493

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
               +DE  +L  V+   G++PD  TY+ L++G CK  R+DDA  L  EM  +GLTP+ V
Sbjct: 494 LTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVV 553

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + T++ G  + GR        EA+++   M  +    +  TY I+++G CK   ++ A 
Sbjct: 554 TYNTILHGLFQTGR------FSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAF 607

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   +  + ++LD      +I    +GG+  +A  +   +   GL PD  TY ++ +  
Sbjct: 608 KMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENL 667

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            K G  +    L   M  +G  P     NAL+  L   G +  A   L  +
Sbjct: 668 IKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKL 718



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 185/386 (47%), Gaps = 29/386 (7%)

Query: 91  RIPARGCRCL-IDRMMRTNLPTVTLGF------YLEILDYGYSPSVYVFNVLMHKLCKEG 143
           R+ A   RCL ++R++     + +LG       + E+L +    SV  FN L+  + +  
Sbjct: 6   RVTAAADRCLELERVIADRAHSGSLGLNDALKLFDEMLTHARPASVRAFNQLLTAVSRAR 65

Query: 144 KIKDAQMVFDEFGKR------GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR- 196
               +++V   F +        +  ++ ++  LI   C+   L  GF    ++  +G R 
Sbjct: 66  CSSASELVVSLFNRMIRECSIKVAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRV 125

Query: 197 PDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            D   +S L+ GLC   R+D+A ++LL  M E G TP+   ++ L+ G C   R +    
Sbjct: 126 NDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAE---- 181

Query: 256 MKEARKIVDEMCTNG---LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
             EA +++  M  +G     P+ +TYT ++DG CK   ++ A  + + MI +G+  +N  
Sbjct: 182 --EALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHT 239

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +T LI G+   GK  E  +ML+EM   GL+PD   Y +++D  CKNG       +   + 
Sbjct: 240 YTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVI 299

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P V  Y  L++G    G L   +  LD M+  GV PD   +NI+   + K    +
Sbjct: 300 RKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMID 359

Query: 433 D----FDKLQSEKGLVSDYACYTSLV 454
           +    FDK++ ++ L  +   Y +L+
Sbjct: 360 EAMHIFDKMRQQR-LSPNIVTYGALI 384


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 162/311 (52%), Gaps = 6/311 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +N L++ L K G   DA +   E  ++G H   V ++ +++  CK KN+D+   L
Sbjct: 371 PDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSL 430

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PDV TY+A+I+G C+  ++D+A+ +L +M + G  PN V +T L++G C 
Sbjct: 431 VIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCH 490

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           NG+        EAR++++    +   P+ ITY+ ++ G  +EG L  A D+ +EMI++G 
Sbjct: 491 NGK------SLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGF 544

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V    LI   CR   VV A++ L E L  G   +   +T VI  FC+ GD      
Sbjct: 545 LPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALS 604

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L++M      P   TY  L + L K  +L  A+ L+  ML  G+ P  +TY  ++   C
Sbjct: 605 MLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFC 664

Query: 427 KHGNPEDFDKL 437
           + G  +D  KL
Sbjct: 665 QWGRVDDMMKL 675



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 181/355 (50%), Gaps = 15/355 (4%)

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           M+R  L  +TL     +   G  P + + N  ++ L K  K++ A    +     G+   
Sbjct: 247 MLRNALRILTL-----MQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPD 301

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            VS+N LI G+C    +D+   L + M   G  PD  +Y  ++  LCK+ ++++ + L+ 
Sbjct: 302 IVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLME 361

Query: 224 EMCERG-LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            M +   L P+ V + TLI    K+G  D      +A   + E    G + DK+ Y+ ++
Sbjct: 362 NMVQNSNLIPDQVTYNTLIYALSKHGHAD------DALVFLREAEEKGFHIDKVGYSAVV 415

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           D FCK  +++ A  +  +M  +G   D V +TA+I GFCR GK+ EA++ML++M K G K
Sbjct: 416 DSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCK 475

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  TYT++++  C NG +     ++         P   TY+A+M+GL + G+L  A  L
Sbjct: 476 PNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDL 535

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
              M++ G +P+ +  N+L++  C++ N     K   E   KG   +   +TS++
Sbjct: 536 TREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVI 590



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 201/423 (47%), Gaps = 24/423 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y TM+  L   ++   AR +L L+ +++G+  S   F+ +                M+ 
Sbjct: 199 VYYTMLDILSKTRLCQGARRILRLM-TRRGIERSPEAFSYV----------------MVS 241

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
           Y   G L +A++   L++K         C   I  +++ N     L F   +   G  P 
Sbjct: 242 YSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPD 301

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-K 187
           +  +N L+   C   +I DA  +  E   +G     VS+ T++   CK + ++E  RL +
Sbjct: 302 IVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLME 361

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           ++++ S + PD  TY+ LI  L K    DDA + L E  E+G   + V ++ ++D  CKN
Sbjct: 362 NMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKN 421

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
             ID      +A+ +V +M + G NPD +TYT ++DGFC+ G ++ A  + ++M K G +
Sbjct: 422 KNID------KAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCK 475

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V +T L++G C  GK +EA  M+    +    P+  TY+ V+    + G       L
Sbjct: 476 PNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDL 535

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            +EM   G LP     N L+  LC++  +  A   L+  L  G   + + +  ++ G C+
Sbjct: 536 TREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQ 595

Query: 428 HGN 430
            G+
Sbjct: 596 IGD 598



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 187/422 (44%), Gaps = 24/422 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y T++ FL   +   + + L+  +V    +      + +++     H            
Sbjct: 339 SYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKH------------ 386

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G  DDA+   R   +  F I   G   ++D   +           +++   G +P 
Sbjct: 387 ----GHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPD 442

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  ++   C+ GKI +A+ +  +  K G     V++  L+NG C      E   + +
Sbjct: 443 VVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMIN 502

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V E     P+  TYSA+++GL +E +L +A  L  EM E+G  PN V    LI   C+N 
Sbjct: 503 VSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQ 562

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            +   G    A+K ++E    G   + + +T ++ GFC+ GDL++AL + ++M       
Sbjct: 563 NV--VG----AKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHP 616

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D + +T L     +  ++ EA  ++ +ML  G+ P   TY  VI  FC+ G      +LL
Sbjct: 617 DAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLL 676

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           ++M +    P    YN ++  LC  G  + A  LL  +L      D  T +IL+E +   
Sbjct: 677 EKMIA--RQPFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLID 734

Query: 429 GN 430
           GN
Sbjct: 735 GN 736



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 154/315 (48%), Gaps = 7/315 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           FY     + Y     V+  ++  L K    + A+ +     +RG+  +  +F+ ++  + 
Sbjct: 184 FYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYS 243

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +A  L    R+ ++M+ +G+ PD+   +  I  L K N+L+ A   L  M   G+ P+ V
Sbjct: 244 RAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIV 303

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  LI G+C   RID      +A +++ EM   G  PDK++Y  ++   CK+  +E   
Sbjct: 304 SYNCLIKGYCDVHRID------DALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVK 357

Query: 296 DIRKEMIKRG-IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            + + M++   +  D V +  LI    + G   +A   LRE  + G   D   Y+ V+D 
Sbjct: 358 RLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDS 417

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           FCKN +      L+ +M S G  P V TY A+++G C+ G++  A  +L  M   G  P+
Sbjct: 418 FCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPN 477

Query: 415 DITYNILLEGHCKHG 429
            +TY +LL G C +G
Sbjct: 478 TVTYTVLLNGLCHNG 492



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           AR+I+  M   G+      ++ ++  + + G L +AL I   M K G+E D       I 
Sbjct: 216 ARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIY 275

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
              +G K+ +A R L  M   G++PD  +Y  +I  +C          L+ EM   G  P
Sbjct: 276 VLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPP 335

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTML-DLGVVPDDITYNILLEGHCKHGNPED---F 434
              +Y  +M  LCK  +++    L++ M+ +  ++PD +TYN L+    KHG+ +D   F
Sbjct: 336 DKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVF 395

Query: 435 DKLQSEKGLVSDYACYTSLVSKSSK 459
            +   EKG   D   Y+++V    K
Sbjct: 396 LREAEEKGFHIDKVGYSAVVDSFCK 420



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D I Y  +LD   K    + A  I + M +RGIE    AF+ ++  + R G +  A R+L
Sbjct: 196 DAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRIL 255

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M K G++PD +     I    K    +   R L+ M+  G  P + +YN L+ G C  
Sbjct: 256 TLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDV 315

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ----SEKGLVSDYAC 449
            ++ +A  L+  M   G  PD ++Y  ++   CK    E+  +L         L+ D   
Sbjct: 316 HRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVT 375

Query: 450 YTSLVSKSSKY 460
           Y +L+   SK+
Sbjct: 376 YNTLIYALSKH 386


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 172/331 (51%), Gaps = 8/331 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P    +N  +H L K G   +A     E  +R      V ++ +++  C+   +D
Sbjct: 366 DSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMD 425

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   + + M   G  PDV TY+++INGLC+E ++D A+ +L +M + G  PN V +T L+
Sbjct: 426 KAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALL 485

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G CKNG      +  EAR++++    +   P+ ITY++L+ GF +EG    A D+ +EM
Sbjct: 486 NGLCKNG------NSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREM 539

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           IK+G     V    LI   C+  KV EA+R + + L  G   +   +T VI  FC+  D 
Sbjct: 540 IKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDL 599

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    LL +M      P V TY  +++ L K G+++ A  L   ML +G++P  +TY  +
Sbjct: 600 EAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTV 659

Query: 422 LEGHCKHGNPEDFDKLQSEKGLVSDYACYTS 452
           +  +C+ G  ED  KL  +  ++S   C T+
Sbjct: 660 IHQYCRMGRVEDLLKLLEK--MLSRQECRTA 688



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 191/423 (45%), Gaps = 24/423 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y T++ FL   K   + R L+  ++    +      + + +     H            
Sbjct: 339 SYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH------------ 386

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G  D+A++  R   +  FR+   G   ++    R            E+   G  P 
Sbjct: 387 ----GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPD 442

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  +++ LC+E K+  A+ +  +  K G     VS+  L+NG CK  N  E   + +
Sbjct: 443 VVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMN 502

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           + E     P+  TYS L++G  +E +  +A  L+ EM ++G  P  V    LI   C+  
Sbjct: 503 MSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEE 562

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++D      EA++ +++   NG   + + +T ++ GFC++ DLE+AL +  +M       
Sbjct: 563 KVD------EAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHP 616

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D V +T +I    + G++ EA ++  +ML+VGL P   TY  VI  +C+ G  +   +LL
Sbjct: 617 DVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLL 676

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           ++M S         YN ++  LC  G L+ A  LL  +L      D  T ++L+E +   
Sbjct: 677 EKMLSRQECRT--AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSK 734

Query: 429 GNP 431
           G P
Sbjct: 735 GIP 737



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 157/304 (51%), Gaps = 7/304 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            F  +M    + GK+++A  V     K G+       NT I+       LD+  R    M
Sbjct: 234 AFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM 293

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +   + P+V TY+ LI G C  +RL+DA  L+ EM  +G +P+ + + T++   CK  RI
Sbjct: 294 QIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRI 353

Query: 251 DMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 KE R ++++M  +  L PD++TY   +    K G  + AL+  +E  +R   +D
Sbjct: 354 ------KEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVD 407

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V ++A++  FCR G++ +A+ ++ EM   G  PD  TYT VI+  C+        ++L+
Sbjct: 408 KVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLR 467

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P   +Y AL+NGLCK+G    A  +++   +   +P+ ITY++L+ G  + G
Sbjct: 468 QMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREG 527

Query: 430 NPED 433
              +
Sbjct: 528 KSSE 531



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 154/306 (50%), Gaps = 7/306 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P + + N  +H L    ++  A    +      +    +++N LI G+C    L++ 
Sbjct: 262 GIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDA 321

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIFTTLID 242
             L + M   G  PD  +Y  ++  LCKE R+ +  LL+ +M  +  L P+ V + T + 
Sbjct: 322 MELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVH 381

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              K+G  D      EA + + E        DK+ Y+ ++  FC+EG ++ A +I  EM 
Sbjct: 382 MLSKHGHGD------EALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMF 435

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G   D V +T++I+G C+  KV +A++MLR+M K G KP+  +YT +++  CKNG++ 
Sbjct: 436 SKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSL 495

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               ++     D  +P   TY+ LM+G  + G+   A  L+  M+  G  P  +  N+L+
Sbjct: 496 EAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLI 555

Query: 423 EGHCKH 428
           +  C+ 
Sbjct: 556 QSLCQE 561



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P+    N+L+  LC+E K+ +A+   ++    G     V+F T+I+G C+  
Sbjct: 538 EMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKD 597

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    L   M  S   PDV TY+ +I+ L K+ R+++A  L  +M   GL P  V + 
Sbjct: 598 DLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYR 657

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I  +C+ GR++      +  K++++M +      +  Y  +++  C  G+LE A  + 
Sbjct: 658 TVIHQYCRMGRVE------DLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKLL 709

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            ++++   ++D      LI  +   G  + +  +   M    L PD
Sbjct: 710 GKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPD 755



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 4/153 (2%)

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
           AF  ++  + R GK+  A R+L  M K G++PD +     I             R L+ M
Sbjct: 234 AFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM 293

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           +     P V TYN L+ G C   +L++A  L+  M   G  PD I+Y  ++   CK    
Sbjct: 294 QIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRI 353

Query: 432 ED----FDKLQSEKGLVSDYACYTSLVSKSSKY 460
           ++     +K+  +  L+ D   Y + V   SK+
Sbjct: 354 KEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 386


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 170/312 (54%), Gaps = 11/312 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV-SFNTLINGHCKAKNL 180
            +G     Y +N LM+     G+++DA  +F+ + + G ++  V SFN  I G C+  ++
Sbjct: 185 QFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDV 244

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTT 239
            +   L   M   G  PD  T + L+ GLC+   +     +L  +   G+  PN V +T+
Sbjct: 245 QKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTS 304

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I G+CK+GR      M++A  + ++M   G  P+ +TY +L++G+ K G++ SA+ + +
Sbjct: 305 VISGYCKSGR------MEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQ 358

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +MI R    D V F+ LI G+CR G++ +A R   EM +  ++P+  T++++I  FCK  
Sbjct: 359 QMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQN 418

Query: 360 DTKTGFRLLKE--MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            +    R LKE  MR+D   P     N +++ LCK G++  AN++L  M   G  PD  T
Sbjct: 419 RSAEALRFLKELNMRTD-IAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYT 477

Query: 418 YNILLEGHCKHG 429
           Y IL+ GHC  G
Sbjct: 478 YTILIIGHCMKG 489



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 168/337 (49%), Gaps = 9/337 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
            YSP V+ FNV +  +C+ G ++ A  + +   + G     V+ N L+ G C+ K +  G
Sbjct: 223 AYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRG 282

Query: 184 FRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             +   ++  G+  P+V TY+++I+G CK  R++DA  + ++M   G TPN V +  LI+
Sbjct: 283 REVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLIN 342

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G+ K      AG+M  A  +  +M      PD +T++ L+DG+C+ G L+ A+    EM 
Sbjct: 343 GYGK------AGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMS 396

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVIDCFCKNGDT 361
           +  I+ +   F+ +I  FC+  +  EA R L+E+ ++  + P       VID  CK G  
Sbjct: 397 QYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKV 456

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                +L EM   G  P   TY  L+ G C  G++  A    + M+D G  PD IT N  
Sbjct: 457 DEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSF 516

Query: 422 LEGHCKHGNPEDFDKLQS-EKGLVSDYACYTSLVSKS 457
           +    K G P + D++     G  S      S VS+S
Sbjct: 517 IGCLLKAGMPSEVDRIMKIASGSTSSSQEVPSPVSQS 553



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 157/325 (48%), Gaps = 9/325 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC-KAKNLDEGFR 185
           PS + +  ++  LC+  +  DA  +FD+   +  H     F + + G C  A  LD    
Sbjct: 119 PSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAA 178

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI-FTTLIDGH 244
           L S     G   + Y Y+ L+N      R+ DA  L     + G    DV  F   I G 
Sbjct: 179 LLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGV 238

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           C+       GD+++A ++V+ M   G +PD +T  IL+ G C+  ++    ++ + + + 
Sbjct: 239 CQ------VGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRD 292

Query: 305 GIELDNVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           G+ + NV  +T++ISG+C+ G++ +A  +  +M+  G  P+  TY ++I+ + K G+  +
Sbjct: 293 GVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGS 352

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + ++M      P V T++ L++G C+ GQL +A      M    + P+  T++I++ 
Sbjct: 353 AVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIIL 412

Query: 424 GHCKHGNPEDFDKLQSEKGLVSDYA 448
             CK     +  +   E  + +D A
Sbjct: 413 SFCKQNRSAEALRFLKELNMRTDIA 437



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  Y +++  G +P+   +NVL++   K G +  A  V+ +   R      V+F+TLI+
Sbjct: 318 AMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLID 377

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LT 231
           G+C+   LD+  R  + M    ++P+ +T+S +I   CK+NR  +A   L E+  R  + 
Sbjct: 378 GYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIA 437

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P   I   +ID  CK G++D      EA  I+ EM   G  PDK TYTIL+ G C +G +
Sbjct: 438 PRAFICNPVIDVLCKGGKVD------EANLILMEMEGKGCRPDKYTYTILIIGHCMKGRI 491

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             A+    +M+  G   D++   + I    + G   E +R+++
Sbjct: 492 SEAITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDRIMK 534



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 97  CRC-LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           CRC  +D  MRT         + E+  Y   P+ + F++++   CK+ +  +A     E 
Sbjct: 380 CRCGQLDDAMRT---------WTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKEL 430

Query: 156 GKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             R  +   A   N +I+  CK   +DE   +   MEG G RPD YTY+ LI G C + R
Sbjct: 431 NMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGR 490

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           + +A    ++M + G +P+ +   + I    K G
Sbjct: 491 ISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAG 524


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 172/340 (50%), Gaps = 11/340 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G  P V  + +L+   CK    K A  + DE   +G     V++N ++NG C+  
Sbjct: 177 DMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEG 236

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+       +   G  P+  +Y+ ++ GLC   R +DAE L+ EM  +G  PN V F 
Sbjct: 237 RVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFN 296

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   C+ G ++       A +I+D++   G  P+ ++Y  +L  FCK+  ++ A+   
Sbjct: 297 MLISFLCRRGLVE------PAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 350

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M+  G   D V++  L++  CRGG+V  A  +L ++   G  P   +Y  VID   K 
Sbjct: 351 ELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKA 410

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G T+    LL EM + G  P + TY+ + +GLC+ G+++ A      + D+G+ P+ + Y
Sbjct: 411 GKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLY 470

Query: 419 NILLEGHCK----HGNPEDFDKLQSEKGLVSDYACYTSLV 454
           N +L G CK    H   + F  + S  G + + + YT L+
Sbjct: 471 NAILLGLCKRRATHSAIDLFTYMVS-NGCMPNESTYTILI 509



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 163/316 (51%), Gaps = 10/316 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  Y +N L+  LC  G+  +A  V D+  +RG     V++  L+   CK     +  +L
Sbjct: 150 PDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKL 209

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ TY+ ++NG+C+E R+DDA   L  +   G  PN V +  ++ G C 
Sbjct: 210 LDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCT 269

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R +      +A K++ EM   G  P+ +T+ +L+   C+ G +E A++I  ++ K G 
Sbjct: 270 AERWE------DAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGC 323

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +++++  ++  FC+  K+  A   +  M+  G  PD  +Y  ++   C+ G+      
Sbjct: 324 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVE 383

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL +++  G  P + +YN +++GL K G+ + A  LL+ M+  G+ PD ITY+ +  G C
Sbjct: 384 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLC 443

Query: 427 KHGNPED----FDKLQ 438
           + G  E+    F K+Q
Sbjct: 444 REGRIEEAIKAFCKVQ 459



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 164/322 (50%), Gaps = 17/322 (5%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            L+ KLC  G+  +A+ V             +S+N ++ G+C    LD   RL + M   
Sbjct: 95  ALIKKLCASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP-- 147

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
            M PD YTY+ LI GLC   R D+A  +L +M  RG  P+ V +T L++  CK       
Sbjct: 148 -MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRS----- 201

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
              K+A K++DEM   G  PD +TY ++++G C+EG ++ A++  K +   G E + V++
Sbjct: 202 -GYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSY 260

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G C   +  +AE+++ EM + G  P+  T+ M+I   C+ G  +    +L ++  
Sbjct: 261 NIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPK 320

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G  P   +YN +++  CK  ++  A   ++ M+  G  PD ++YN LL   C+ G  + 
Sbjct: 321 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDA 380

Query: 434 FDKLQSEKGLVSDYACYTSLVS 455
             +L  +   + D  C   L+S
Sbjct: 381 AVELLHQ---LKDKGCTPVLIS 399



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 175/330 (53%), Gaps = 9/330 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G +P +  +NV+++ +C+EG++ DA          G     VS+N ++ G C A+
Sbjct: 212 EMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAE 271

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++  +L + M   G  P+V T++ LI+ LC+   ++ A  +L ++ + G TPN + + 
Sbjct: 272 RWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYN 331

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            ++   CK  ++D       A   V+ M ++G  PD ++Y  LL   C+ G++++A+++ 
Sbjct: 332 PILHAFCKQKKMD------RAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELL 385

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++  +G     +++  +I G  + GK  EA  +L EM+  GL+PD  TY+ +    C+ 
Sbjct: 386 HQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCRE 445

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +   +   +++  G  P    YNA++ GLCK     +A  L   M+  G +P++ TY
Sbjct: 446 GRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTY 505

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVS 445
            IL+EG    G  ++  ++ +E   +G+VS
Sbjct: 506 TILIEGLAYEGLVKEAREMMAELCSRGVVS 535



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 150/297 (50%), Gaps = 6/297 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   +  YG  P+   +N+++  LC   + +DA+ +  E  ++G     V+FN LI+  C
Sbjct: 244 FLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLC 303

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   ++    +   +   G  P+  +Y+ +++  CK+ ++D A   +  M   G  P+ V
Sbjct: 304 RRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIV 363

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TL+   C+ G +D A ++    K  D+ CT    P  I+Y  ++DG  K G  E AL
Sbjct: 364 SYNTLLTALCRGGEVDAAVELLHQLK--DKGCT----PVLISYNTVIDGLTKAGKTEEAL 417

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  EM+ +G++ D + ++ + SG CR G++ EA +   ++  +G++P+   Y  ++   
Sbjct: 418 ELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGL 477

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           CK   T +   L   M S+G +P   TY  L+ GL   G +K A  ++  +   GVV
Sbjct: 478 CKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVV 534



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F   ++  G  P +  +N L+  LC+ G++  A  +  +   +G     +S+NT+I+
Sbjct: 346 AMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVID 405

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  KA   +E   L + M   G++PD+ TYS + +GLC+E R+++A     ++ + G+ P
Sbjct: 406 GLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRP 465

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V++  ++ G CK      A D+         M +NG  P++ TYTIL++G   EG ++
Sbjct: 466 NTVLYNAILLGLCKRRATHSAIDL------FTYMVSNGCMPNESTYTILIEGLAYEGLVK 519

Query: 293 SALDIRKEMIKRGI 306
            A ++  E+  RG+
Sbjct: 520 EAREMMAELCSRGV 533



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 20/221 (9%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           +LH    +K M   A  F  ++ + G +   +  + L+      G +D A++    L+  
Sbjct: 333 ILHAFCKQKKM-DRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKD- 390

Query: 89  YFRIPARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
                 +GC         +ID + +       L    E++  G  P +  ++ +   LC+
Sbjct: 391 ------KGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCR 444

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
           EG+I++A   F +    G+    V +N ++ G CK +       L + M  +G  P+  T
Sbjct: 445 EGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNEST 504

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
           Y+ LI GL  E  + +A  ++ E+C RG     V+  TL++
Sbjct: 505 YTILIEGLAYEGLVKEAREMMAELCSRG-----VVSKTLVN 540


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 211/417 (50%), Gaps = 15/417 (3%)

Query: 30  LHLIVSK----KGMGSSASLFASILETRGTHLPGLVLDALMI--VYVDLGFLDDAIQCFR 83
           LH++++       +G + S+ A IL+    H P       +I  +YV+ G + +A+  F 
Sbjct: 99  LHILINSFCHLNRVGFAFSVLAKILKL--GHQPDTATFTTLIRGIYVE-GKIGEALHLFD 155

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
            +    FR        LI+ + +    +  +     ++     P+V+ +N ++  LCK+ 
Sbjct: 156 KMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDR 215

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++ +A  +F E   +G+     ++N+LI+  C          L + M  S + PDV +++
Sbjct: 216 QVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFN 275

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +++ LCKE ++ +A  ++ +M +RG+ PN V +T L+DGHC      +  +M EA K+ 
Sbjct: 276 TVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHC------LLSEMDEAVKVF 329

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D M   G  P+ I+Y  L++G+CK   ++ A+ +  EM ++ +  D V ++ LI G C  
Sbjct: 330 DTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHV 389

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
            ++ +A  +  EM+     P+  TY +++D  CKN        LLK +      P ++  
Sbjct: 390 ERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVN 449

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           N  ++G+C+ G+L+ A  L   +   G+ PD  TY+I++ G C+ G  ++  KL  E
Sbjct: 450 NIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFRE 506



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 150/304 (49%), Gaps = 6/304 (1%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P++Y  ++L++  C   ++  A  V  +  K G      +F TLI G      + E
Sbjct: 90  FGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGE 149

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L   M G G RPDV TY  LINGLCK      A  LL  M ++   PN   + T+ID
Sbjct: 150 ALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIID 209

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             CK+ ++       EA  +  EM T G++PD  TY  L+   C   + +    +  EM+
Sbjct: 210 SLCKDRQV------TEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV 263

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
              I  D V+F  ++   C+ GKV EA  ++ +M++ G++P+  TYT ++D  C   +  
Sbjct: 264 DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMD 323

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
              ++   M   G +P V +YN L+NG CK  ++  A  L   M    ++PD +TY+ L+
Sbjct: 324 EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 383

Query: 423 EGHC 426
            G C
Sbjct: 384 HGLC 387



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 171/358 (47%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    T     + E++  G SP ++ +N L+H LC   + K    + +E     
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK 266

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +    VSFNT+++  CK   + E   +   M   G+ P+V TY+AL++G C  + +D+A 
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M  +G  PN + + TLI+G+CK  RID      +A  +  EMC   L PD +TY+
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRID------KAMYLFGEMCRQELIPDTVTYS 380

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ G C    L+ A+ +  EM+      + V +  L+   C+   + EA  +L+ +   
Sbjct: 381 TLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGS 440

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            L PD     + ID  C+ G+ +    L   + S G  P V TY+ ++NGLC+ G L  A
Sbjct: 441 NLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEA 500

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           + L   M + G   +   YN +  G  ++       +L  E   +G  +D +  T  V
Sbjct: 501 SKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFV 558



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 156/304 (51%), Gaps = 11/304 (3%)

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           + V FN L+    K K+      L   M+  G+ P++YT   LIN  C  NR+  A  +L
Sbjct: 60  STVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVL 119

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            ++ + G  P+   FTTLI G      I + G + EA  + D+M   G  PD +TY  L+
Sbjct: 120 AKILKLGHQPDTATFTTLIRG------IYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLI 173

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G CK G+  +A+ +   M+++  + +  A+  +I   C+  +V EA  +  EM+  G+ 
Sbjct: 174 NGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGIS 233

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  TY  +I   C   + K    LL EM     +P V ++N +++ LCK G++  A+ +
Sbjct: 234 PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDV 293

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSS 458
           +D M+  GV P+ +TY  L++GHC     ++    FD +   KG + +   Y +L++   
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC-KGCMPNVISYNTLINGYC 352

Query: 459 KYRQ 462
           K ++
Sbjct: 353 KIQR 356



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 29/281 (10%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++  G  P+V  +  LM   C   ++ +A  VFD    +G     +S+NTLING+CK +
Sbjct: 296 KMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQ 355

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +D+   L   M    + PD  TYS LI+GLC   RL DA  L HEM      PN V + 
Sbjct: 356 RIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR 415

Query: 239 TLIDGHCKN---------------GRID--------------MAGDMKEARKIVDEMCTN 269
            L+D  CKN                 +D               AG+++ AR +   + + 
Sbjct: 416 ILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSK 475

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           GL PD  TY+I+++G C+ G L+ A  + +EM + G  L+   +  +  GF R  +   A
Sbjct: 476 GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRA 535

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            ++L+EM+  G   D +T T+ +     +G  ++  ++L+E
Sbjct: 536 IQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILRE 576



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           +  + E++     P++  + +L+  LCK   + +A  +        L       N  I+G
Sbjct: 396 IALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDG 455

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C+A  L+    L S +   G++PDV+TYS +INGLC+   LD+A  L  EM E G T N
Sbjct: 456 MCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 515

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
             I+ T+  G  +N       +   A +++ EM   G + D  T T+ +     +G  +S
Sbjct: 516 GCIYNTITRGFLRN------NETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQS 569

Query: 294 ALDIRKEMIK 303
              I +E ++
Sbjct: 570 LKQILREFVQ 579



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 3/185 (1%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P  + +  LL    K     + L +  +M   GI  +      LI+ FC   +V  A  +
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L ++LK+G +PD AT+T +I      G       L  +M  +G  P V TY  L+NGLCK
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G    A  LL +M+     P+   YN +++  CK     +   L SE   KG+  D   
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 450 YTSLV 454
           Y SL+
Sbjct: 239 YNSLI 243



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/127 (19%), Positives = 49/127 (38%)

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           ID M R          +  +   G  P V+ ++++++ LC+ G + +A  +F E  + G 
Sbjct: 453 IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGC 512

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220
                 +NT+  G  +        +L   M   G   D  T +  +  L  +      + 
Sbjct: 513 TLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQ 572

Query: 221 LLHEMCE 227
           +L E  +
Sbjct: 573 ILREFVQ 579



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
              ML++   P    +  ++    K     T   L  +M S G  P + T + L+N  C 
Sbjct: 49  FNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCH 108

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYA 448
             ++  A  +L  +L LG  PD  T+  L+ G    G   +    FDK+  E G   D  
Sbjct: 109 LNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGE-GFRPDVV 167

Query: 449 CYTSLVS 455
            Y +L++
Sbjct: 168 TYGTLIN 174


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 11/347 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           + D    P  Y +N L+  LC  G+  +A  V ++  +RG     V++  L+   CK   
Sbjct: 157 VADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSG 216

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             +  +L   M   G  PD+ TY+ ++NG+C+E R++DA   L  +   G  PN V +  
Sbjct: 217 YKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNI 276

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           ++ G      +  A   ++A K+++EM   G  P+ +T+ +L+   C+ G +E A+++ +
Sbjct: 277 VLKG------LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLE 330

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           +M + G   +++++  L+  FC+  K+ +A   +  M+  G  PD  +Y  ++   C+NG
Sbjct: 331 QMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNG 390

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           +      LL +++  G  P + +YN +++GL K G+ K A  LLD M   G+ PD ITY+
Sbjct: 391 EVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYS 450

Query: 420 ILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
            +  G C+    E+    F K+Q + G+    A Y +++    K R+
Sbjct: 451 TIASGLCREDRIEEAVRTFCKVQ-DMGIRPTAALYNAILLGLCKRRE 496



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 154/296 (52%), Gaps = 14/296 (4%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
            L+ KLC  G+  DA+ V    G        + +N ++ G+C A  LD   RL + M   
Sbjct: 109 ALIKKLCASGRTADARRVLAASGP-----DVMVYNAMVAGYCGAGQLDAARRLVADMP-- 161

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253
            + PD YTY+ LI GLC   R  +A  +L +M  RG  P+ V +T L++  CK       
Sbjct: 162 -VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRS----- 215

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
              K+A K++DEM   G  PD +TY ++L+G C+EG +E A++  K +   G E + V++
Sbjct: 216 -GYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSY 274

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             ++ G     +  +AE+++ EM   G  P+  T+ M+I   C+ G  +    +L++M  
Sbjct: 275 NIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQ 334

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            G  P   +YN L++  CK  ++  A   ++ M+  G  PD ++YN LL   C++G
Sbjct: 335 YGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNG 390



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 161/311 (51%), Gaps = 6/311 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G +P +  +NV+++ +C+EG+++DA          G     VS+N ++ G   A+
Sbjct: 226 EMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAE 285

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++  +L   M   G  P+V T++ LI+ LC+   ++ A  +L +M + G TPN + + 
Sbjct: 286 RWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYN 345

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+   CK  +I       +A + V+ M + G  PD ++Y  LL   C+ G+++ A+++ 
Sbjct: 346 PLLHAFCKQKKI------HKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELL 399

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++  +G     +++  +I G  + GK  EA  +L EM   GL+PD  TY+ +    C+ 
Sbjct: 400 HQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCRE 459

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +   R   +++  G  P    YNA++ GLCK  +  NA  L   M+  G +P++ TY
Sbjct: 460 DRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTY 519

Query: 419 NILLEGHCKHG 429
            IL+EG    G
Sbjct: 520 TILVEGLAYEG 530



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + R  L    +    ++  YG +P+   +N L+H  CK+ KI  A    +    RG
Sbjct: 312 LISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG 371

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            +   VS+NTL+   C+   +D    L   ++  G  P + +Y+ +I+GL K  +  +A 
Sbjct: 372 CYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEAL 431

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL EM  +GL P+ + ++T+  G C+  RI+      EA +   ++   G+ P    Y 
Sbjct: 432 ELLDEMTSKGLQPDIITYSTIASGLCREDRIE------EAVRTFCKVQDMGIRPTAALYN 485

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +L G CK  +  +A+D+   MI  G   +   +T L+ G    G V EA  +  ++   
Sbjct: 486 AILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSR 545

Query: 340 GL 341
           G+
Sbjct: 546 GV 547



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 94  ARGC-------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
           +RGC         L+  + R     V +    ++ D G SP +  +N ++  L K GK K
Sbjct: 369 SRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTK 428

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A  + DE   +GL    ++++T+ +G C+   ++E  R    ++  G+RP    Y+A++
Sbjct: 429 EALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAIL 488

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
            GLCK     +A  L   M   G  PN+  +T L++G    G +      KEAR++  ++
Sbjct: 489 LGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLV------KEARELFAQL 542

Query: 267 CTNGL 271
           C+ G+
Sbjct: 543 CSRGV 547


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 175/384 (45%), Gaps = 76/384 (19%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G  P+   + +L+H LCK G + DA  + D   ++G+  T   +N+LIN  CK  
Sbjct: 362 EMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKD 421

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +LD      S M   G+ P+  +YS +I GLC++  L  A  L  +M E+G+  N   FT
Sbjct: 422 DLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFT 481

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI+G CK      A  M EA ++ ++M  + L P+++T+  +++G+C  GD+  A  + 
Sbjct: 482 ALINGFCK------AKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLY 535

Query: 299 KEMIKRGIELDNVAF-----------------------------------TALISGFCRG 323
            +M+ RG+  DN  +                                   TAL+ GFCR 
Sbjct: 536 DQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCRE 595

Query: 324 GKVVEAER-----------------------------------MLREMLKVGLKPDDATY 348
           G++ EA                                     + REM + G++PD+  +
Sbjct: 596 GRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFH 655

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T +I+ + K G+         EM +DGHLP   TY AL+N LCK   L +A +L   ML 
Sbjct: 656 TCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLA 715

Query: 409 LGVVPDDITYNILLEGHCKHGNPE 432
              +P+  T+N  L+     GN E
Sbjct: 716 SHFLPNSYTFNCFLDYFATEGNLE 739



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 180/344 (52%), Gaps = 9/344 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G    + D G   S   +NVL++ LCK  ++++A  V +    RG+ A  V+  TL+ G 
Sbjct: 218 GLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGF 277

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           C+ + LD    +   M   G  P     S +++GL K+ R+++A  L  ++ E  + PN 
Sbjct: 278 CRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNI 337

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             +  L++  CKNG         EA ++V+EM   GL P+++TY IL+   CK G ++ A
Sbjct: 338 FAYNALLNNMCKNGMFS------EADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDA 391

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L +   M ++G+ +    + +LI+  C+   +  A   L EM+++GL P+ A+Y+ VI  
Sbjct: 392 LCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAG 451

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C+ GD      L ++M   G      T+ AL+NG CK  ++  A+ L + M +  + P+
Sbjct: 452 LCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPN 511

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           ++T+N ++EG+C  G+     +L  +   +GL  D   Y SL+S
Sbjct: 512 EVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLIS 555



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 213/457 (46%), Gaps = 35/457 (7%)

Query: 36  KKGMGSSASLFASILETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPA 94
           K GM S A    + +  +G   P  V  A++I      G +DDA+     +R+   R+  
Sbjct: 349 KNGMFSEADRLVNEMSDKGLE-PNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTV 407

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
                LI+   + +   + +GF  E+++ G +P+   ++ ++  LC++G +  A  +  +
Sbjct: 408 YPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRK 467

Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
             ++G+     +F  LING CKAK +DE  RL + M  S + P+  T++A+I G C    
Sbjct: 468 MAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGD 527

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--------------------- 253
           +  A  L  +M  RGLTP++  + +LI G C       A                     
Sbjct: 528 IRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTA 587

Query: 254 --------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
                   G + EA  + +EM   G   D I++TI++    K+ D E +  + +EM ++G
Sbjct: 588 LLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKG 647

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  DNV  T +I+ + + G +V+A     EM+  G  P+  TYT +++  CK+    +  
Sbjct: 648 VRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAE 707

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
            L KEM +   LP   T+N  ++     G L+ A  L   ML  G + + ++ N L++G 
Sbjct: 708 LLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQ-GFLANIVSVNTLIKGF 766

Query: 426 CKHGNPE---DFDKLQSEKGLVSDYACYTSLVSKSSK 459
           CK G  +   D     +E G   D   Y++++ +  K
Sbjct: 767 CKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCK 803



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 9/345 (2%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L  G +P  +  + ++  L K  +   A+ +FD     G+      +   I  +C+ +NL
Sbjct: 154 LSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNL 213

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D    L + M+  G +     Y+ LI GLCK  R+ +A  + + M  RG+  ++V   TL
Sbjct: 214 DGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTL 273

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           + G C+   +DMA +M        +M   G  P +   + +LDG  K+G +E A  +  +
Sbjct: 274 VYGFCRTEELDMALEM------TGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQ 327

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           + +  +  +  A+ AL++  C+ G   EA+R++ EM   GL+P++ TY ++I   CK G 
Sbjct: 328 LGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGM 387

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 +L  MR  G    V  YN+L+N  CK   L  A   L  M+++G+ P+  +Y+ 
Sbjct: 388 MDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSP 447

Query: 421 LLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           ++ G C+ G+     +  +  +EKG+  +   +T+L++   K ++
Sbjct: 448 VIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKK 492



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           +    L+H  C+EG++ +A  V++E    G     +SF  ++    K  + ++   L   
Sbjct: 583 FSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFRE 642

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           M+  G+RPD   ++ +IN   KE  +  A     EM   G  PN V +T L++  CK+  
Sbjct: 643 MKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWH 702

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 +  A  +  EM  +   P+  T+   LD F  EG+LE+A D+   M++ G   +
Sbjct: 703 ------LSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQ-GFLAN 755

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V+   LI GFC+ G++ EA  ++    + G  PD  +Y+ VI   CK GD      L  
Sbjct: 756 IVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWN 815

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           EM   G  P +  YN L+     HG+      +   M+  GV P+  T+  L  G
Sbjct: 816 EMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKGVQPNWHTHRALFVG 870



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 115/256 (44%), Gaps = 9/256 (3%)

Query: 66  MIVYVDLGFLDDAIQC--FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
           +IVY  L   D    C  FR +++   R       C+I+   +       L  + E++  
Sbjct: 622 IIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIAD 681

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P+   +  L++ LCK   +  A+++  E         + +FN  ++      NL+  
Sbjct: 682 GHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETA 741

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   M   G   ++ + + LI G CK  ++ +A  L+    E G  P+ + ++T+I  
Sbjct: 742 KDLYFAML-QGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHE 800

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK       GD+ EA ++ +EM   G+ PD + Y IL+      G+ +  L I  +M+K
Sbjct: 801 LCKK------GDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVK 854

Query: 304 RGIELDNVAFTALISG 319
           +G++ +     AL  G
Sbjct: 855 KGVQPNWHTHRALFVG 870


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 180/389 (46%), Gaps = 26/389 (6%)

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           VY      +  +  F  + +  F    R C  ++  +  + +       Y  ++++G  P
Sbjct: 214 VYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMP 273

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  FN ++    K G ++    ++ E  +R +  + V++N LING  K   ++E  R  
Sbjct: 274 TVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFH 333

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M  SG     Y+++ LI G CK+   DDA  +  EM   G+ P    +   I   C  
Sbjct: 334 GDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDF 393

Query: 248 GRIDMA-------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
           GRID A                         G   EA  + D++    ++P  +TY  L+
Sbjct: 394 GRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLI 453

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG C+ G+LE A  +++EM  + I  D + +T L+ GF + G +  A  +  EML+ G+K
Sbjct: 454 DGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIK 513

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEM-RSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           PD   YT       + GD+   FRL +EM  +D H P +  YN  ++GLCK G L  A  
Sbjct: 514 PDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIE 573

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGN 430
               +  +G+VPD +TY  ++ G+ ++G 
Sbjct: 574 FQRKIFRVGLVPDHVTYTTVIRGYLENGQ 602



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 169/323 (52%), Gaps = 7/323 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L    +P V  +N LMH   K GK  +A ++FD+     +H + V++NTLI+G C++ 
Sbjct: 401 ELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESG 460

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL+   RLK  M    + PDV TY+ L+ G  K   L  A  +  EM  +G+ P+   +T
Sbjct: 461 NLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYT 520

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T   G  +       GD  +A ++ +EM  T+   PD   Y + +DG CK G+L  A++ 
Sbjct: 521 TRAVGELR------LGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEF 574

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           ++++ + G+  D+V +T +I G+   G+   A  +  EML+  L P   TY ++I    K
Sbjct: 575 QRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAK 634

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +  F+   EM+  G  P V T+NAL+ G+CK G +  A   L  M + G+ P+  +
Sbjct: 635 AGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYS 694

Query: 418 YNILLEGHCKHGNPEDFDKLQSE 440
           Y +L+  +C     E+  KL  E
Sbjct: 695 YTMLISKNCDFEKWEEVVKLYKE 717



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 167/370 (45%), Gaps = 49/370 (13%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ PSV   N+++  L     +  A  V++   + G+  T ++FNT+++   KA +L+  
Sbjct: 235 GFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERV 294

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   M+   +     TY+ LING  K  ++++A     +M   G       F  LI+G
Sbjct: 295 DKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEG 354

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G  D      +A  + DEM   G+ P   TY I +   C  G ++ A    +E++ 
Sbjct: 355 YCKQGLFD------DAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDA----RELLS 404

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                D V++  L+ G+ + GK VEA  +  ++    + P   TY  +ID  C++G+ + 
Sbjct: 405 SMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEG 464

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD--------- 414
             RL +EM +    P V TY  L+ G  K+G L  A  + D ML  G+ PD         
Sbjct: 465 AQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAV 524

Query: 415 --------------------------DIT-YNILLEGHCKHGN---PEDFDKLQSEKGLV 444
                                     D+T YN+ ++G CK GN     +F +     GLV
Sbjct: 525 GELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLV 584

Query: 445 SDYACYTSLV 454
            D+  YT+++
Sbjct: 585 PDHVTYTTVI 594



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 11/280 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  L+    K G +  A  V+DE  ++G+     ++ T   G  +  + D+ FRL
Sbjct: 479 PDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRL 538

Query: 187 KSVMEGSGMR-PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              M  +    PD+  Y+  I+GLCK   L  A     ++   GL P+ V +TT+I G+ 
Sbjct: 539 HEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYL 598

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG+  MA      R + DEM    L P  ITY +L+ G  K G LE A     EM KRG
Sbjct: 599 ENGQFKMA------RNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRG 652

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + +   AL+ G C+ G + EA R L +M + G+ P+  +YTM+I   C     +   
Sbjct: 653 VRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVV 712

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
           +L KEM      P   T+ AL     KH +  + +M LD+
Sbjct: 713 KLYKEMLDKEIEPDGYTHRALF----KHLEKDHESMALDS 748



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 9/185 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F  +I   G  P    +  ++    + G+ K A+ ++DE  ++ L+ + +++  LI 
Sbjct: 571 AIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIY 630

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           GH KA  L++ F+  + M+  G+RP+V T++AL+ G+CK   +D+A   L +M E G+ P
Sbjct: 631 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPP 690

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   +T LI  +C   +       +E  K+  EM    + PD  T+  L      E D E
Sbjct: 691 NKYSYTMLISKNCDFEK------WEEVVKLYKEMLDKEIEPDGYTHRALFKHL--EKDHE 742

Query: 293 S-ALD 296
           S ALD
Sbjct: 743 SMALD 747


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 184/341 (53%), Gaps = 9/341 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y  +L  G SP+V  +++L++ LC+ G++ +A  VF +  K+GL  + +++++LI+G CK
Sbjct: 368 YTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCK 427

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           ++NL +GF L  +M   G  PDV   S LINGL ++  +D+A     +  +RGLT N+ +
Sbjct: 428 SENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYL 487

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F  LIDG  +  R       ++  K+   M    + PD +TYT+L+ G  ++G L+ AL 
Sbjct: 488 FNALIDGCFRLKRT------RDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALA 541

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +++K+G   D++ +  LI GFC+        ++ + M   G+ PD   Y ++I+ F 
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           + G  +    LL+E+   G  P + TYN ++ G C       A  L + +      P+ I
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAI 661

Query: 417 TYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           T+ IL++ +CK G  +D   + S   E+G   +   Y+ L+
Sbjct: 662 TFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 212/456 (46%), Gaps = 77/456 (16%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           SLF+  L  RG  +  ++  ++M  YV +G L  AI+ +  + K            LI+ 
Sbjct: 331 SLFSMAL-ARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILING 389

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK---------------------- 141
           + R        G + +IL  G  PSV  ++ L+   CK                      
Sbjct: 390 LCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPD 449

Query: 142 -------------EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
                        +G + +A   F +  KRGL      FN LI+G  + K   +G ++  
Sbjct: 450 VVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYI 509

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           +M    + PDV TY+ L+ GL ++ RLD+A  L  ++ ++G +P+ +I+ TLIDG CK  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                 D     +I   M +NG+ PD   Y +L++ F +EG +E+ L++ +E+IK G+E 
Sbjct: 570 ------DPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEP 623

Query: 309 D-----------------------------------NVAFTALISGFCRGGKVVEAERML 333
           D                                    + FT LI  +C+ G++ +A  + 
Sbjct: 624 DIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIF 683

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             ML+ G +P+  TY+ +ID + K  +T++ F L ++M  D   P + +Y+ L++GLCK 
Sbjct: 684 SSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKK 743

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           G ++ A++     +   ++PD I Y IL+ G+CK G
Sbjct: 744 GLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVG 779



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 226/493 (45%), Gaps = 50/493 (10%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           + ++  + H L+ H+M   A  +   +V + G       F       G++ P  V   L+
Sbjct: 89  VQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSN-PSTVYSFLL 147

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y   G +D A+  F  + K    I       ++D ++ ++   V L  Y E+   G  
Sbjct: 148 HCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCK-GLG 206

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
              +VFN  +    K G+++          +RGL    V  N ++ G C    +      
Sbjct: 207 VYEFVFNSFL----KRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDF 262

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M  SG  P++ T+S LIN  CKE RLD+A  L + M E+G+ P+ VI++ LI+G  +
Sbjct: 263 FDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFR 322

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 AG ++E   +       G+  D + ++ ++D + + GDL  A+++   M+K GI
Sbjct: 323 ------AGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGI 376

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V ++ LI+G CR G+V+EA  +  ++LK GL+P   TY+ +ID FCK+ + + GF 
Sbjct: 377 SPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFG 436

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA---------------NMLLDTMLD--- 408
           L   M   GH+P V   + L+NGL + G +  A               N L + ++D   
Sbjct: 437 LYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCF 496

Query: 409 -----------------LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
                              V+PD +TY +L++G  + G  ++   L  +   KG   D+ 
Sbjct: 497 RLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHI 556

Query: 449 CYTSLVSKSSKYR 461
            Y +L+    K R
Sbjct: 557 IYCTLIDGFCKKR 569



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 189/372 (50%), Gaps = 7/372 (1%)

Query: 53  RGTHLPGLVLDALMIVYVD-LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           R  H+P +V+ +++I  +   G +D+A++ F    K    +       LID   R     
Sbjct: 443 RKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTR 502

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             L  Y+ +  Y   P V  + VL+  L ++G++ +A  +F +  K+G     + + TLI
Sbjct: 503 DGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLI 562

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G CK ++   G ++  +M+ +G+ PD+  Y+ LIN   +E  +++   LL E+ + GL 
Sbjct: 563 DGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLE 622

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V + T+I G+C            +A K+ + +      P+ IT+TIL+D +CK+G +
Sbjct: 623 PDIVTYNTMICGYCS------LKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRM 676

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A+ I   M++RG E + + ++ LI G+ +      A  +  +ML   + P+  +Y+++
Sbjct: 677 DDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSIL 736

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID  CK G  +      +       LP V  Y  L+ G CK G+L  A ML D ML  G+
Sbjct: 737 IDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGI 796

Query: 412 VPDDITYNILLE 423
           +PDD+    L E
Sbjct: 797 MPDDLLQKALAE 808


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 173/337 (51%), Gaps = 14/337 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID   +  L T        + + G  P +  +N +++  CK G+IK+A    ++  +RG
Sbjct: 312 VIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERG 371

Query: 160 LHATAVSFNTLINGHCKAKNLDEG----FRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           L     S+  L++ +CK  +  +     FR+  +    G +PD+ +Y A I+G+     +
Sbjct: 372 LLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEI----GEKPDLVSYGAFIHGVVVHGEI 427

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A ++  +M E+G+ P+  I+  L+ G CKNGR          + ++ EM    + PD 
Sbjct: 428 DVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRF------PAMKLLLSEMLDRNVQPDV 481

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
             +  L+DGF + G+L+ A+ I K +I++G++   V + A+I GFC+ GK+ +A   L +
Sbjct: 482 YVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNK 541

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M  V   PD+ TY+ VID + K  D  +  ++  +M      P V TY +L+NG CK   
Sbjct: 542 MKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKAD 601

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +  A  +   M    +VP+ +TY  L+ G  K G PE
Sbjct: 602 MIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPE 638



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 194/382 (50%), Gaps = 13/382 (3%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEI 120
             AL++ Y + G LD A+Q F  +R+ +  +P       L++ ++++    V L  Y ++
Sbjct: 129 FSALILAYGESGSLDRALQLFHTVREMHNCLPTVVASNSLLNGLVKSGKVDVALQLYDKM 188

Query: 121 L--DYGYSPSV--YVFNVLMHKLCKEGKIKDAQ-MVFDEFGKRGLHATAVSFNTLINGHC 175
           L  D G    V  Y  ++++  LC  GKI++ + +V D +GK G     V +N +I+G+C
Sbjct: 189 LQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGK-GCVPHVVFYNMIIDGYC 247

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K  +L    R    ++  G+ P V TY ALING CK    +  + LL EM  RGL  N  
Sbjct: 248 KKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVK 307

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           +F  +ID   K G +  A +       +  M   G  PD  TY  +++  CK G ++ A 
Sbjct: 308 VFNNVIDAEFKYGLVTKAAE------TMRRMAEMGCGPDITTYNTMINFSCKGGRIKEAD 361

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           +  ++  +RG+  +  ++T L+  +C+ G  V+A  ML  + ++G KPD  +Y   I   
Sbjct: 362 EFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGV 421

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
             +G+      + ++M   G  P  + YN LM+GLCK+G+     +LL  MLD  V PD 
Sbjct: 422 VVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDV 481

Query: 416 ITYNILLEGHCKHGNPEDFDKL 437
             +  L++G  ++G  ++  K+
Sbjct: 482 YVFATLMDGFIRNGELDEAIKI 503



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 171/343 (49%), Gaps = 36/343 (10%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G  P   ++NVLM  LCK G+    +++  E   R +      F TL++G  +  
Sbjct: 436 KMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNG 495

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LDE  ++  V+   G+ P +  Y+A+I G CK  ++ DA   L++M      P++  ++
Sbjct: 496 ELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYS 555

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+IDG+ K        DM  A K+  +M  +   P+ ITYT L++GFCK+ D+     IR
Sbjct: 556 TVIDGYVKQH------DMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADM-----IR 604

Query: 299 KEMIKRGIEL-----DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
            E + RG++      + V +T L+ GF + GK  +A  +   ML  G  P+DAT+  +I+
Sbjct: 605 AEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLIN 664

Query: 354 CFCKNGDTKTGFRLLKE-----------------MRSDGHLPAVETYNALMNGLCKHGQL 396
                 +T T   L++E                 M S+G    +  YN+++  LCKHG +
Sbjct: 665 GLT---NTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMV 721

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
             A +LL  ML  G + D + +  +L G C  G  +++  + S
Sbjct: 722 DTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKGKSKEWRNIIS 764



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 11/289 (3%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSAL 205
           + ++V +    + L  T  +F+ LI  + ++ +LD   +L  +V E     P V   ++L
Sbjct: 109 EIELVLENMKAQHLKPTREAFSALILAYGESGSLDRALQLFHTVREMHNCLPTVVASNSL 168

Query: 206 INGLCKENRLDDAELLLHEMCER----GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           +NGL K  ++D A  L  +M +     G   ++   + ++ G C  G+I+      E R+
Sbjct: 169 LNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIE------EGRR 222

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           +V +    G  P  + Y +++DG+CK+GDL+ A    KE+  +G+      + ALI+GFC
Sbjct: 223 LVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFC 282

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + G+    +++L EM   GL  +   +  VID   K G        ++ M   G  P + 
Sbjct: 283 KAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDIT 342

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           TYN ++N  CK G++K A+  L+   + G++P+  +Y  L+  +CK G+
Sbjct: 343 TYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGD 391



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 164/399 (41%), Gaps = 55/399 (13%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83
           +Q  ++L   + K G   +  L  S +  R       V   LM  ++  G LD+AI+ F+
Sbjct: 446 AQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFK 505

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           +                                   I+  G  P +  +N ++   CK G
Sbjct: 506 V-----------------------------------IIRKGVDPGIVGYNAMIKGFCKFG 530

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K+ DA    ++           +++T+I+G+ K  ++    ++   M     +P+V TY+
Sbjct: 531 KMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYT 590

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           +LING CK+  +  AE +   M    L PN V +TTL+ G  K      AG  ++A  I 
Sbjct: 591 SLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFK------AGKPEKATSIF 644

Query: 264 DEMCTNGLNPDKITYTILLDGFCK--------------EGDLESALDIRKEMIKRGIELD 309
           + M  NG  P+  T+  L++G                 E +    LD    M+  G +  
Sbjct: 645 ELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQV 704

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
             A+ ++I   C+ G V  A+ +L +ML  G   D   +T ++   C  G +K    ++ 
Sbjct: 705 IAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKGKSKEWRNIIS 764

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
              +   L     Y+  ++     G+L  A+++L T+++
Sbjct: 765 CDLNKIELQTAVKYSLTLDKYLYQGRLSEASVILQTLIE 803


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 214/476 (44%), Gaps = 71/476 (14%)

Query: 11  STMVHFLVAHKMH--SQARDLLHLIVSKKGMGSSASLFASILET--------RGTHL--- 57
           S +V F    K H   +A DL H +V +     S   F S+L          RG      
Sbjct: 114 SFIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDY 173

Query: 58  ------------PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC-LIDRM 104
                        GL  + ++     LGF+D AI+ FR + +    +P     C L+D +
Sbjct: 174 VVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKC-LPDGYTYCTLMDGL 232

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            +       +    E+   G SPS  ++NVL+  LCK+G +     + D    +G     
Sbjct: 233 CKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNE 292

Query: 165 VSFNTLINGHCKAKNLD-----------------------------------EGFRLKSV 189
           V++NTLI+G C    LD                                   +G RL   
Sbjct: 293 VTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLIS 352

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           ME  G R + + YS LI+GL KE + ++A  L  +M E+G  PN V+++ +IDG C+ G+
Sbjct: 353 MEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGK 412

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
            +      EA++I++ M ++G  P+  TY+ L+ GF K G  E A+ + +EM + G   +
Sbjct: 413 PN------EAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRN 466

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              ++ LI G C  G+V EA  +  +ML +G+KPD   Y+ +I   C  G      +L  
Sbjct: 467 EFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYH 526

Query: 370 EM---RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           EM         P V TYN L++GLC    +  A  LL+ MLD G  PD IT N  L
Sbjct: 527 EMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFL 582



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 199/421 (47%), Gaps = 14/421 (3%)

Query: 42  SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLI 101
           S  +F S  +     L    L +++  Y +LG      +    +R     I  R    + 
Sbjct: 60  SEQMFKSAPKMGSFKLGDSTLSSMIENYANLGDFASVEKLLSRIRLENRVIIERSFIVVF 119

Query: 102 DRMMRTNLPTVTLGFYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
               + +LP   +  +  ++D +    SV  FN +++ +  EG        +D      +
Sbjct: 120 RAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNM 179

Query: 161 H----ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +       +SFN +I   CK   +D    +   M      PD YTY  L++GLCKE R+D
Sbjct: 180 NMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERID 239

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A LLL EM   G +P+ VI+  LIDG CK G      D+    K+VD M   G  P+++
Sbjct: 240 EAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG------DLSRVTKLVDNMFLKGCFPNEV 293

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+ G C +G L+ A+ + + M+      ++V +  LI+G  +  + ++  R+L  M
Sbjct: 294 TYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISM 353

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G + +   Y+++I    K G  +    L K+M   G  P +  Y+A+++GLC+ G+ 
Sbjct: 354 EERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKP 413

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSL 453
             A  +L+ M+  G +P+  TY+ L++G  K G  E+  ++     E G   +  CY+ L
Sbjct: 414 NEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVL 473

Query: 454 V 454
           +
Sbjct: 474 I 474



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 163/370 (44%), Gaps = 41/370 (11%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y+T++H L       +A  LL  +VS K + +          T GT + GLV     + 
Sbjct: 294 TYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDV--------TYGTLINGLVKQRRAM- 344

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
                   D  +    + +  +R+       LI  + +       +  + ++ + G  P+
Sbjct: 345 --------DGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPN 396

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           + V++ ++  LC+EGK  +A+ + +     G      ++++L+ G  K    +E  ++  
Sbjct: 397 IVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWR 456

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M+ +G   + + YS LI+GLC   R+ +A ++  +M   G+ P+ V ++++I G C  G
Sbjct: 457 EMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIG 516

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
            +D A  +       +E  +    PD +TY ILLDG C + D+  A+D+   M+ RG + 
Sbjct: 517 SMDAALKLYHEMLCQEEPKSQ---PDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDP 573

Query: 309 DNVA---------------------FTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           D +                         L++   +  +V  A +++  ML   L P  +T
Sbjct: 574 DVITCNTFLNTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVMLGKYLAPKTST 633

Query: 348 YTMVIDCFCK 357
           + M++   CK
Sbjct: 634 WAMIVPEICK 643



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 145/314 (46%), Gaps = 39/314 (12%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           +RL  H YS ++  L       +A  L   + ++KG   +  +++++++  G    G   
Sbjct: 358 YRLNQHIYSVLISGLFKEGKAEEAMTLWKKM-AEKGCRPNIVVYSAVID--GLCREGKPN 414

Query: 63  DALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           +A  I+   +  G L + +  +  L K +F+               T L    +  + E+
Sbjct: 415 EAKEILNGMISSGCLPN-VYTYSSLMKGFFK---------------TGLSEEAIQVWREM 458

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
            + G S + + ++VL+  LC  G++K+A MV+ +    G+    V+++++I G C   ++
Sbjct: 459 DETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSM 518

Query: 181 DEGFRLKSVM---EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
           D   +L   M   E    +PDV TY+ L++GLC +  +  A  LL+ M +RG  P+ +  
Sbjct: 519 DAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITC 578

Query: 238 TTLIDG------HCKNGRIDM----AGDMKEAR-----KIVDEMCTNGLNPDKITYTILL 282
            T ++        C+ GR  +    A  +K  R     KIV+ M    L P   T+ +++
Sbjct: 579 NTFLNTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIV 638

Query: 283 DGFCKEGDLESALD 296
              CK   + +A++
Sbjct: 639 PEICKPKKINAAIN 652


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 184/379 (48%), Gaps = 21/379 (5%)

Query: 91  RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
           +I  R C  L+       L    +  +  +   G SPSV  FN L+  L K G+   A  
Sbjct: 94  KIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHS 153

Query: 151 VFDEF-GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           VFDE  G  G+     +FN LI G CK   +DEGFR    M      PDV TY+ L++GL
Sbjct: 154 VFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGL 213

Query: 210 CKENRLDDAELLLHEMCE--RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
           C+  ++  A  ++  M +  + L+P+ V +TTL+ G+C    ID      EA  + +EM 
Sbjct: 214 CRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEID------EALVVFEEMV 267

Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI-KRGIELDNVAFTALISGFCRGGKV 326
           + GL P+ ITY  L+ G C+    +   +I    +  RG   D   +  L++  C  G  
Sbjct: 268 SRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNF 327

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE-------MRSDGHLPA 379
            EA +M ++M ++ ++PD ATY+++I   C+ GD +   +L  +       +R DG  P 
Sbjct: 328 DEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPL 387

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-- 437
           V  YN + + LCK+G+   A  +   ++  G   D  +Y  L+ GHCK G  E   KL  
Sbjct: 388 VAAYNPIFDFLCKNGKTHKAERVFRQLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYKLLL 446

Query: 438 -QSEKGLVSDYACYTSLVS 455
               +  V D+  Y  L++
Sbjct: 447 FMLRRDYVPDFETYVLLIN 465



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 175/379 (46%), Gaps = 16/379 (4%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL- 121
           + L+  Y + G  ++AI+ F L++             L+  +++     +    + E+  
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG +P  Y FN+L+   CK   + +    F E  +       V++NTL++G C+A  + 
Sbjct: 161 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220

Query: 182 EGFRLKS--VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
               +    V +   + PDV TY+ L+ G C +  +D+A ++  EM  RGL PND+ + T
Sbjct: 221 IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNT 280

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C+  + D   ++     +   +   G  PD  TY  L++  C  G+ + AL + K
Sbjct: 281 LIKGLCEVQKFDKIKEI-----LGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFK 335

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-------GLKPDDATYTMVI 352
           +M +  ++ D+  ++ LI   C+ G    AE++  ++          G  P  A Y  + 
Sbjct: 336 KMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIF 395

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           D  CKNG T    R+ +++   G      +Y  L+ G CK G  +    LL  ML    V
Sbjct: 396 DFLCKNGKTHKAERVFRQLMKKGTQDP-PSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYV 454

Query: 413 PDDITYNILLEGHCKHGNP 431
           PD  TY +L+ G  + G P
Sbjct: 455 PDFETYVLLINGFLQKGEP 473



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 155/358 (43%), Gaps = 53/358 (14%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKI-KDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           + E++  G  P+   +N L+  LC+  K  K  +++    G RG      ++NTL+N  C
Sbjct: 263 FEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQC 322

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER------- 228
            A N DE  ++   M+   ++PD  TYS LI  LC+    + AE L  ++ +        
Sbjct: 323 DAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDD 382

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G TP    +  + D  CKNG+        +A ++  ++   G   D  +Y  L+ G CKE
Sbjct: 383 GCTPLVAAYNPIFDFLCKNGKT------HKAERVFRQLMKKG-TQDPPSYKTLIIGHCKE 435

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G  E+   +   M++R    D   +  LI+GF + G+ + A + L  MLK    P  + +
Sbjct: 436 GTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVF 495

Query: 349 TMVIDCFCKN-----------------------------------GDTKTGFRLLKEMRS 373
             ++    KN                                   G     F++++ +  
Sbjct: 496 HSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYD 555

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           +G++  +E    L+  +C++G+L +A  +L   L+ G   D    N+++EG CK   P
Sbjct: 556 NGYMVDME---ELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRP 610



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +K +D     ++  +   G      +L   M+S G  P+V T+N+L+  L K G+   A
Sbjct: 92  SVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMA 151

Query: 400 NMLLDTML-DLGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
           + + D M    GV PD  T+NIL+ G CK+   ++   F K  S      D   Y +LV
Sbjct: 152 HSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLV 210


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 182/360 (50%), Gaps = 22/360 (6%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            Y ++L  G  P V  F  L+  L K G +K A   F    K  +     ++N+LI+G+C
Sbjct: 122 LYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYC 181

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           KA +L E   L+  ME  G+  DV TY+ LI GLC   RL++A  L+ +M E  +  N V
Sbjct: 182 KAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSV 241

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            F  +IDG CK       GDM++A ++  +M    + P+ IT++IL+DGFC +G++ +A+
Sbjct: 242 XFNVVIDGCCK------IGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAM 295

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +  EM+ +GI  D V +TALI G C+ G   EA R+ +EML  GL P+  T + VID  
Sbjct: 296 GLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGL 355

Query: 356 CKNGDTKTGFRLLKEMRSDGH----------LPAVETYNALMNGLCKHGQLKNANMLLDT 405
            K+G T    ++  E    G+           P    Y  L+ GLC+ G +  A      
Sbjct: 356 LKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAE 415

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYRQ 462
           M   G  PD + Y  +L+ H +  +  D   L ++    G++ +   Y  L   S  YR+
Sbjct: 416 MKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVL---SRGYRE 472



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 182/371 (49%), Gaps = 32/371 (8%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  L+  +++T +       Y++++   +SP+V  + +LM+  C +G   +AQ VFDE  
Sbjct: 7   CNALLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKVFDEML 66

Query: 157 KRGLHATAV--------------------------SFNTLINGHCKAKNLDEGFRLKSVM 190
           +RG+    V                          ++ TL++G+    ++   F L   M
Sbjct: 67  ERGIEPNVVIYGQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDM 126

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
              G+ PDV T++ LI+ L K   L  A      M +  + PN   + +LI G+CK    
Sbjct: 127 LKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCK---- 182

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             AGD+ EA  +  EM   G+  D +TY IL+ G C    LE A+ + ++M +  +  ++
Sbjct: 183 --AGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANS 240

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V F  +I G C+ G + +A  +  +M +  ++P+  T++++ID FC  G+ +    L  E
Sbjct: 241 VXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTE 300

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G +P V TY AL++G CK G  K A  L   MLD G+ P+  T + +++G  K G 
Sbjct: 301 MVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGR 360

Query: 431 PEDFDKLQSEK 441
             D  K+  EK
Sbjct: 361 TNDAIKMFLEK 371



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 21/369 (5%)

Query: 58  PGLVLDA-----LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112
           PGL  D      L+ V   +G L  A  CF  + K            LI    +      
Sbjct: 129 PGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLE 188

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +   LE+   G    V  +N+L+  LC   ++++A  + ++  +  + A +V FN +I+
Sbjct: 189 AMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVID 248

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G CK  ++++   + S M    + P+V T+S LI+G C +  +  A  L  EM  +G+ P
Sbjct: 249 GCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVP 308

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           + V +T LIDGHCK       G+ KEA ++  EM   GL+P+  T + ++DG  K+G   
Sbjct: 309 DVVTYTALIDGHCK------VGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTN 362

Query: 293 SALDIRKE----------MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
            A+ +  E          M  R    +++ +  LI G C  G + +A +   EM   G K
Sbjct: 363 DAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFK 422

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD   Y  ++    ++        L  +M   G +     Y  L  G  ++G LK+A M 
Sbjct: 423 PDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVLSRGYRENGYLKSALMC 482

Query: 403 LDTMLDLGV 411
            + +++ G+
Sbjct: 483 SEYLMEYGI 491


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 179/368 (48%), Gaps = 40/368 (10%)

Query: 108 NLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           +L  + L F +  +IL +GY P       L+  LC +G++K A    D+   +G     V
Sbjct: 110 HLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQV 169

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           S+ TLING CK        +L   ++G    P+V  Y+ +I+ LCK   + +A  L  EM
Sbjct: 170 SYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEM 229

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
             +G++ N V ++ +I G C      + G + EA   ++EM    +NPD   Y  L+D  
Sbjct: 230 SVKGISANVVTYSAIIHGFC------IVGKLTEALGFLNEMVLKAINPDVYIYNTLVDAL 283

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGF------------------------- 320
            KEG ++ A ++   ++K  ++ + + +  LI G+                         
Sbjct: 284 HKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMIN 343

Query: 321 --CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
             C+  +V EA  + +EM +  + P+  TY  +ID  CK+G     + L+ EM   GH  
Sbjct: 344 RLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHA 403

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
            V TYN+L+NGLCK+GQL  A  L++ M D G+ PD  T NILL G    G      +L+
Sbjct: 404 NVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKG-----KRLK 458

Query: 439 SEKGLVSD 446
           + +GL  D
Sbjct: 459 NAQGLFQD 466



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 168/336 (50%), Gaps = 22/336 (6%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V ++N ++  LCK   + +A  +F E   +G+ A  V+++ +I+G C    L E    
Sbjct: 201 PNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGF 260

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M    + PDVY Y+ L++ L KE ++ +A+ +L  + +  L PN + + TLIDG+ K
Sbjct: 261 LNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAK 320

Query: 247 N---------------------GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
           +                      R+     ++EA  +  EM    + P+ +TY  L+DG 
Sbjct: 321 HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGL 380

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CK G +  A D+  EM  RG   + + + +LI+G C+ G++ +A  ++ +M   G++PD 
Sbjct: 381 CKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDM 440

Query: 346 ATYTMVID-CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
            T  +++    CK    K    L +++   G+ P V TYN ++ G CK G L  A  L  
Sbjct: 441 YTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQS 500

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            M D G  P+ IT+ I++    + G  +  +KL  E
Sbjct: 501 KMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCE 536



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 183/404 (45%), Gaps = 34/404 (8%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   L  +G  L  +    L+     +G    AIQ  R +           
Sbjct: 146 KGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVM 205

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID + +  L +     + E+   G S +V  ++ ++H  C  GK+ +A    +E  
Sbjct: 206 YNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMV 265

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING-------- 208
            + ++     +NTL++   K   + E   + +V+  + ++P+V TY+ LI+G        
Sbjct: 266 LKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNA 325

Query: 209 -------------------LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
                              LCK  R+++A  L  EM ++ + PN V + +LIDG CK+GR
Sbjct: 326 VGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGR 385

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           I  A D+      +DEM   G + + ITY  L++G CK G L+ A+ +  +M  +GI+ D
Sbjct: 386 ISYAWDL------IDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPD 439

Query: 310 NVAFTALISG-FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
                 L+ G  C+G ++  A+ + +++L  G  P+  TY ++I   CK G     + L 
Sbjct: 440 MYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQ 499

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            +M   G  P   T+  ++  L + G+   A  LL  M+  G++
Sbjct: 500 SKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGLL 543



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 6/264 (2%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           + FN +++   K K+      L   +E   ++PD +T + LIN  C   +++ A  +L +
Sbjct: 64  IQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSK 123

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           + + G  P+ V  TTLI G C      + G +K+A    D++   G   D+++Y  L++G
Sbjct: 124 ILKWGYQPDTVTLTTLIKGLC------LKGQVKKALHFHDKLLAQGFRLDQVSYGTLING 177

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            CK G+  +A+ + + +  R  E + V +  +I   C+   V EA  +  EM   G+  +
Sbjct: 178 VCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISAN 237

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             TY+ +I  FC  G        L EM      P V  YN L++ L K G++K A  +L 
Sbjct: 238 VVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLA 297

Query: 405 TMLDLGVVPDDITYNILLEGHCKH 428
            ++   + P+ ITYN L++G+ KH
Sbjct: 298 VIVKTCLKPNVITYNTLIDGYAKH 321



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 6/237 (2%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P +  ++ +++   K         L   +  + + P+      LI+  C  G+I++A   
Sbjct: 61  PPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFS- 119

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                ++ ++   G  PD +T T L+ G C +G ++ AL    +++ +G  LD V++  L
Sbjct: 120 -----VLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTL 174

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G C+ G+   A ++LR +     +P+   Y  +IDC CK         L  EM   G 
Sbjct: 175 INGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGI 234

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
              V TY+A+++G C  G+L  A   L+ M+   + PD   YN L++   K G  ++
Sbjct: 235 SANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKE 291



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V +A      ML +   P    +  ++D F K     T   L + +      P   T N 
Sbjct: 44  VDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           L+N  C  GQ+  A  +L  +L  G  PD +T   L++G C  G  +      DKL ++ 
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQ- 162

Query: 442 GLVSDYACYTSLVSKSSKYRQKR 464
           G   D   Y +L++   K  + R
Sbjct: 163 GFRLDQVSYGTLINGVCKIGETR 185


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 176/340 (51%), Gaps = 11/340 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  Y +N L+  LC  G+  +A  V DE  +R      V++  L+   CK     +  +L
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 215

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ TY+ ++NG+C+E R+DDA   L  +   G  PN V +  ++ G C 
Sbjct: 216 LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 275

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R       ++A +++ EM   G  P+ +T+ +L+   C++G +E AL++ +++ K G 
Sbjct: 276 AER------WEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 329

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +++++  L+  FC+  K+ +A   L  M+  G  PD  +Y  ++   C++G+      
Sbjct: 330 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 389

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL +++  G  P + +YN +++GL K G+ K A  LL+ M+  G+ PD ITY+ +  G C
Sbjct: 390 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 449

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           +    ED    F K+Q + G+  +   Y +++    K R+
Sbjct: 450 REDRIEDAIRAFGKVQ-DMGIRPNTVLYNAIILGLCKRRE 488



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 167/338 (49%), Gaps = 17/338 (5%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           L ++     P       L+ KL   G+  +A+ V    G        +++N ++ G+C A
Sbjct: 85  LRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGP-----DVMAYNAMVAGYCGA 139

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             LD   RL + M    + PD YTY+ LI GLC   R  +A  +L EM  R   P+ V +
Sbjct: 140 GQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTY 196

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T L++  CK          K+A K++DEM   G  PD +TY ++++G C+EG ++ A++ 
Sbjct: 197 TILLEATCKRS------GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 250

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            K +   G E + V++  ++ G C   +  +AE ++ EM + G  P+  T+ M+I   C+
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 310

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +    +L+++   G  P   +YN L++  CK  ++  A   LD M+  G  PD ++
Sbjct: 311 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 370

Query: 418 YNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           YN LL   C+ G  +   +L  +   + D  C   L+S
Sbjct: 371 YNTLLTALCRSGEVDVAVELLHQ---LKDKGCAPVLIS 405



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 174/340 (51%), Gaps = 8/340 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G +P +  +NV+++ +C+EG++ DA          G     VS+N ++ G C A+
Sbjct: 218 EMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAE 277

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++   L   M   G  P+V T++ LI+ LC++  ++ A  +L ++ + G TPN + + 
Sbjct: 278 RWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYN 337

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+   CK  ++D      +A   +D M + G  PD ++Y  LL   C+ G+++ A+++ 
Sbjct: 338 PLLHAFCKQKKMD------KAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 391

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++  +G     +++  +I G  + GK  EA  +L EM+  GL+PD  TY+ +    C+ 
Sbjct: 392 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 451

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +   R   +++  G  P    YNA++ GLCK  +  +A  L   M+  G +P++ TY
Sbjct: 452 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 511

Query: 419 NILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSS 458
            IL+EG    G  ++   L  E  L S      SL++K +
Sbjct: 512 TILIEGLAYEGLIKEARDLLDE--LCSRGVVRKSLINKGA 549



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 153/297 (51%), Gaps = 6/297 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   +  YG  P+   +N+++  LC   + +DA+ +  E G++G     V+FN LI+  C
Sbjct: 250 FLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC 309

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   ++    +   +   G  P+  +Y+ L++  CK+ ++D A   L  M  RG  P+ V
Sbjct: 310 RKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIV 369

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TL+   C++G +D+A ++      + ++   G  P  I+Y  ++DG  K G  + AL
Sbjct: 370 SYNTLLTALCRSGEVDVAVEL------LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 423

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  EM+ +G++ D + ++ + +G CR  ++ +A R   ++  +G++P+   Y  +I   
Sbjct: 424 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 483

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           CK  +T +   L   M  +G +P   TY  L+ GL   G +K A  LLD +   GVV
Sbjct: 484 CKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 6/242 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + R  L    L    +I  YG +P+   +N L+H  CK+ K+  A    D    RG
Sbjct: 304 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 363

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            +   VS+NTL+   C++  +D    L   ++  G  P + +Y+ +I+GL K  +  +A 
Sbjct: 364 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 423

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL+EM  +GL P+ + ++T+  G C+  RI+   D   A   V +M   G+ P+ + Y 
Sbjct: 424 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIE---DAIRAFGKVQDM---GIRPNTVLYN 477

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ G CK  +  SA+D+   MI  G   +   +T LI G    G + EA  +L E+   
Sbjct: 478 AIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 537

Query: 340 GL 341
           G+
Sbjct: 538 GV 539



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 1/208 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LLH    +K M   A  F  ++ +RG +   +  + L+      G +D A++    L+  
Sbjct: 339 LLHAFCKQKKM-DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDK 397

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                      +ID + +       L    E++  G  P +  ++ +   LC+E +I+DA
Sbjct: 398 GCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDA 457

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
              F +    G+    V +N +I G CK +       L + M G+G  P+  TY+ LI G
Sbjct: 458 IRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEG 517

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVI 236
           L  E  + +A  LL E+C RG+    +I
Sbjct: 518 LAYEGLIKEARDLLDELCSRGVVRKSLI 545


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 212/456 (46%), Gaps = 77/456 (16%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           SLF+  L  RG  +  ++  ++M  YV +G L  AI+ +  + K            LI+ 
Sbjct: 331 SLFSMAL-ARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILING 389

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK---------------------- 141
           + R        G + +IL  G  PSV  ++ L+   CK                      
Sbjct: 390 LCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPD 449

Query: 142 -------------EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
                        +G + +A   F +  KRGL      FN LI+G  + K   +G ++  
Sbjct: 450 VVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYI 509

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           +M    + PDV TY+ L+ GL ++ RLD+A  L  ++ ++G +P+ +I+ TLIDG CK  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
                 D     +I   M +NG+ PD   Y +L++ F +EG +E+ L++ +E+IK G+E 
Sbjct: 570 ------DPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEP 623

Query: 309 D-----------------------------------NVAFTALISGFCRGGKVVEAERML 333
           D                                    + FT LI  +C+ G++ +A  + 
Sbjct: 624 DIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIF 683

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             ML+ G +P+  TY+ +ID + K  +T++ F L ++M  D   P + +Y+ L++GLCK 
Sbjct: 684 SSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKK 743

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           G ++ A++     +   ++PD I Y IL+ G+CK G
Sbjct: 744 GLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVG 779



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 184/341 (53%), Gaps = 9/341 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y  +L  G SP+V  +++L++ LC+ G++ +A  VF +  K+GL  + +++++LI+G CK
Sbjct: 368 YTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCK 427

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
           ++NL +GF L  +M   G  PDV   S LINGL ++  +D+A     +  +RGLT N+ +
Sbjct: 428 SENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYL 487

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F  LIDG  +  R       ++  K+   M    + PD +TYT+L+ G  ++G L+ AL 
Sbjct: 488 FNALIDGCFRLKRT------RDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALA 541

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +++K+G   D++ +  LI GFC+        ++ + M   G+ PD   Y ++I+ F 
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           + G  +    LL+E+   G  P + TYN ++ G C       A  L + +      P+ I
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAI 661

Query: 417 TYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           T+ IL++ +CK G  +D   + S   E+G   +   Y+ L+
Sbjct: 662 TFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 226/493 (45%), Gaps = 50/493 (10%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           + ++  + H L+ H+M   A  +   +V + G       F       G++ P  V   L+
Sbjct: 89  VQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSN-PSTVYSFLL 147

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             Y   G +D A+  F  + K    I       ++D ++ ++   V L  Y E+   G  
Sbjct: 148 HCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCK-GLG 206

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
              +VFN  +    K G+++          +RGL    V  N ++ G C    +      
Sbjct: 207 VYEFVFNSFL----KRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDF 262

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M  SG  P++ T+S LIN  CKE RLD+A  L + M E+G+ P+ VI++ LI+G  +
Sbjct: 263 FDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFR 322

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                 AG ++E   +       G+  D + ++ ++D + + GDL  A+++   M+K GI
Sbjct: 323 ------AGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGI 376

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + V ++ LI+G CR G+V+EA  +  ++LK GL+P   TY+ +ID FCK+ + + GF 
Sbjct: 377 SPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFG 436

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA---------------NMLLDTMLD--- 408
           L   M   GH+P V   + L+NGL + G +  A               N L + ++D   
Sbjct: 437 LYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCF 496

Query: 409 -----------------LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYA 448
                              V+PD +TY +L++G  + G  ++   L  +   KG   D+ 
Sbjct: 497 RLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHI 556

Query: 449 CYTSLVSKSSKYR 461
            Y +L+    K R
Sbjct: 557 IYCTLIDGFCKKR 569



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 189/372 (50%), Gaps = 7/372 (1%)

Query: 53  RGTHLPGLVLDALMIVYVD-LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
           R  H+P +V+ +++I  +   G +D+A++ F    K    +       LID   R     
Sbjct: 443 RKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTR 502

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
             L  Y+ +  Y   P V  + VL+  L ++G++ +A  +F +  K+G     + + TLI
Sbjct: 503 DGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLI 562

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G CK ++   G ++  +M+ +G+ PD+  Y+ LIN   +E  +++   LL E+ + GL 
Sbjct: 563 DGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLE 622

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+ V + T+I G+C            +A K+ + +      P+ IT+TIL+D +CK+G +
Sbjct: 623 PDIVTYNTMICGYCS------LKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRM 676

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A+ I   M++RG E + + ++ LI G+ +      A  +  +ML   + P+  +Y+++
Sbjct: 677 DDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSIL 736

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID  CK G  +      +       LP V  Y  L+ G CK G+L  A ML D ML  G+
Sbjct: 737 IDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGI 796

Query: 412 VPDDITYNILLE 423
           +PDD+    L E
Sbjct: 797 MPDDLLQKALAE 808



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%)

Query: 41  SSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL 100
           S A     +L+   T    +    L+  Y   G +DDA+  F  + +           CL
Sbjct: 642 SKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCL 701

Query: 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160
           ID   +T         Y ++L    SP++  +++L+  LCK+G +++A + F     R L
Sbjct: 702 IDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHL 761

Query: 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
               +++  LI G+CK   L E   L   M  +G+ PD
Sbjct: 762 LPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 179/330 (54%), Gaps = 10/330 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +I+  GY P+V ++N ++  LC++G++  A  V     K G+    V++N+LI     + 
Sbjct: 174 QIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSG 233

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 R+ S M   G+ PDV T+SALI+   KE +L +A+   +EM +R + PN V + 
Sbjct: 234 TWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYN 293

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           +LI+G C +G +D      EA+K+++ + + G  P+ +TY  L++G+CK   ++  + I 
Sbjct: 294 SLINGLCIHGLLD------EAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKIL 347

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M + G++ D   +  L  G+C+ GK   AE++L  M+  G+ PD  T+ +++D  C +
Sbjct: 348 CVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDH 407

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G        L++++    +  + TYN ++ GLCK  ++++A  L  ++   GV PD ITY
Sbjct: 408 GKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITY 467

Query: 419 NILLEG----HCKHGNPEDFDKLQSEKGLV 444
             ++ G           E + K+Q E GL+
Sbjct: 468 ITMMIGLRRKRLWREAHELYRKMQKEDGLM 497



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 176/342 (51%), Gaps = 15/342 (4%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++L  +LE+L  G S  +Y F  L+   C+  ++  A     +  K G   + V+F +L
Sbjct: 98  VISLFRHLEML--GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSL 155

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +NG C      E   L   + G G  P+V  Y+ +I+ LC++ +++ A  +L  M + G+
Sbjct: 156 VNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGI 215

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + +LI       R+  +G    + +I+ +M   G++PD IT++ L+D + KEG 
Sbjct: 216 RPDVVTYNSLIT------RLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQ 269

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           L  A     EMI+R +  + V + +LI+G C  G + EA+++L  ++  G  P+  TY  
Sbjct: 270 LLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNT 329

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ +CK      G ++L  M  DG      TYN L  G C+ G+   A  +L  M+  G
Sbjct: 330 LINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCG 389

Query: 411 VVPDDITYNILLEGHCKHGNP-------EDFDKLQSEKGLVS 445
           V PD  T+NILL+G C HG         ED  K ++  G+++
Sbjct: 390 VHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIIT 431



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 203/425 (47%), Gaps = 12/425 (2%)

Query: 44  SLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102
           +LF  + E+    LP +V    L+I    L   +  I  FR L              LID
Sbjct: 65  TLFCDMAESHP--LPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLID 122

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
              R    ++ L    +++  G+ PS+  F  L++  C   +  +A  + D+    G   
Sbjct: 123 CFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEP 182

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             V +NT+I+  C+   ++    +   M+  G+RPDV TY++LI  L        +  +L
Sbjct: 183 NVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARIL 242

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
            +M   G++P+ + F+ LID + K G+      + EA+K  +EM    +NP+ +TY  L+
Sbjct: 243 SDMMRMGISPDVITFSALIDVYGKEGQ------LLEAKKQYNEMIQRSVNPNIVTYNSLI 296

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           +G C  G L+ A  +   ++ +G   + V +  LI+G+C+  +V +  ++L  M + G+ 
Sbjct: 297 NGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVD 356

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
            D  TY  +   +C+ G      ++L  M S G  P + T+N L++GLC HG++  A + 
Sbjct: 357 GDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVR 416

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
           L+ +     V   ITYNI+++G CK    ED   L    + KG+  D   Y +++    +
Sbjct: 417 LEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRR 476

Query: 460 YRQKR 464
            R  R
Sbjct: 477 KRLWR 481



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 158/313 (50%), Gaps = 9/313 (2%)

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K  DA  +F +  +     + V F+ L+    K    +    L   +E  G+  D+Y+++
Sbjct: 59  KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            LI+  C+  RL  A   L +M + G  P+ V F +L++G C   R        EA  +V
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNR------FYEAMSLV 172

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           D++   G  P+ + Y  ++D  C++G + +ALD+ K M K GI  D V + +LI+     
Sbjct: 173 DQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHS 232

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G    + R+L +M+++G+ PD  T++ +ID + K G      +   EM      P + TY
Sbjct: 233 GTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTY 292

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSE 440
           N+L+NGLC HG L  A  +L+ ++  G  P+ +TYN L+ G+CK    +D  K+    S 
Sbjct: 293 NSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSR 352

Query: 441 KGLVSDYACYTSL 453
            G+  D   Y +L
Sbjct: 353 DGVDGDTFTYNTL 365


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 183/362 (50%), Gaps = 34/362 (9%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S+  +N+ +  L + G++ +A++V DE   +G+   A ++N +++G C+   L +   L 
Sbjct: 327 SLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLM 386

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
            +M  +G+ PD   YS L++G C   ++ +A+ +LHEM   G  PN     TL+    K 
Sbjct: 387 DLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKE 446

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR        EA +++ +M      PD +T  I+++G C+ G+L+ A +I  EM   G  
Sbjct: 447 GRT------LEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPT 500

Query: 308 L----------------------DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
                                  D + +T LI+G C+ G++ EA++   EML   L+PD 
Sbjct: 501 SLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDS 560

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY   I  FCK G   + FR+LK+M  +G    ++TYNAL+ GL  + Q+     L D 
Sbjct: 561 VTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDE 620

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV---SKSSK 459
           M + G+ PD  TYN ++   C+ G  +D   L  E   KG+  + + +  L+   SKSS 
Sbjct: 621 MKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSD 680

Query: 460 YR 461
           ++
Sbjct: 681 FK 682



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 220/493 (44%), Gaps = 94/493 (19%)

Query: 56  HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI-PARGCRCLIDR-MMRTNLPTVT 113
           H+    L +++ V   LG +DDAI  F+ LR  +  + P+     L+ R  +R + P   
Sbjct: 75  HIAHPSLISMVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFV 134

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL------------- 160
              Y ++L    +P  Y FN+L+H LC+      A  +F++  ++G              
Sbjct: 135 SWLYSDMLAARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRG 194

Query: 161 ---------------------HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
                                 A  V +NTL++  C+ +  +E  RL   M   G+ PDV
Sbjct: 195 LCRAGLVKQALELVNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDV 254

Query: 200 YTYSALINGLCKENRLDDAELLLHEM---CERGLT-PNDVIFTTLIDGHCKNGRIDMA-- 253
            T+++ I+ LC+  ++ +A  +  +M    E GL  PN V F  ++ G CK+G +  A  
Sbjct: 255 VTFNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARG 314

Query: 254 ---------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
                                      G++ EAR ++DEM   G+ P+  TY I++DG C
Sbjct: 315 LVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLC 374

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           +   L  A  +   M++ G+  D VA++ L+ G+C  GKV EA+ +L EM++ G +P+  
Sbjct: 375 RNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTY 434

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           T   ++    K G T     +L++M    + P   T N ++NGLC++G+L  A+ ++  M
Sbjct: 435 TCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEM 494

Query: 407 -------LDLG---------------VVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
                  LD G                +PD ITY  L+ G CK G  E+  K   E   K
Sbjct: 495 WTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAK 554

Query: 442 GLVSDYACYTSLV 454
            L  D   Y + +
Sbjct: 555 NLRPDSVTYDTFI 567



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 28/334 (8%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+ Y +N++M  LC+   + DA+ + D   + G++   V+++TL++G+C   
Sbjct: 353 EMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRG 412

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            + E   +   M  +G +P+ YT + L++ L KE R  +AE +L +M E+   P+ V   
Sbjct: 413 KVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCN 472

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN----------------------PDKI 276
            +++G C+NG +D      +A +IV EM TNG                        PD I
Sbjct: 473 IVVNGLCRNGELD------KASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGI 526

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TYT L++G CK G LE A     EM+ + +  D+V +   I  FC+ GK+  A R+L++M
Sbjct: 527 TYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDM 586

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            + G      TY  +I     N      + L  EM+  G  P + TYN ++  LC+ G+ 
Sbjct: 587 ERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKA 646

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           K+A  LL  MLD G+ P+  ++ IL++   K  +
Sbjct: 647 KDAISLLHEMLDKGISPNVSSFKILIKAFSKSSD 680



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 165/375 (44%), Gaps = 62/375 (16%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+ Y  N L+H L KEG+  +A+ +  +  ++      V+ N ++NG C+  
Sbjct: 423 EMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNG 482

Query: 179 NLDEGFRLKSVMEGSGMR----------------------PDVYTYSALINGLCKENRLD 216
            LD+   + S M  +G                        PD  TY+ LINGLCK  RL+
Sbjct: 483 ELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLE 542

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           +A+    EM  + L P+ V + T I   CK G+I        A +++ +M  NG +    
Sbjct: 543 EAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKIS------SAFRVLKDMERNGCSKTLQ 596

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  L+ G      +     ++ EM ++GI  D   +  +I+  C GGK  +A  +L EM
Sbjct: 597 TYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEM 656

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK------------------EMRSDGHLP 378
           L  G+ P+ +++ ++I  F K+ D K    L +                  E+ + G L 
Sbjct: 657 LDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALYSLMFNELLAGGQLS 716

Query: 379 AVET----------------YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
             +                 Y  L+  LC+  +L +AN LL  ++D G   D  ++  ++
Sbjct: 717 EAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVI 776

Query: 423 EGHCKHGNPEDFDKL 437
           +G  K GN    D+L
Sbjct: 777 DGLSKRGNKRQADEL 791



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 7/255 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           ++E+L     P    ++  +   CK+GKI  A  V  +  + G   T  ++N LI G   
Sbjct: 548 FIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGS 607

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
              + E + LK  M+  G+ PD+ TY+ +I  LC+  +  DA  LLHEM ++G++PN   
Sbjct: 608 NNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSS 667

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F  LI    K      + D K A ++  E+  N     +  Y+++ +     G L  A +
Sbjct: 668 FKILIKAFSK------SSDFKVACELF-EVALNICGRKEALYSLMFNELLAGGQLSEAKE 720

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +  + R + L N  +  LI+  C+  ++ +A  +L +++  G   D A++  VID   
Sbjct: 721 LFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLS 780

Query: 357 KNGDTKTGFRLLKEM 371
           K G+ +    L K M
Sbjct: 781 KRGNKRQADELAKRM 795


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 176/340 (51%), Gaps = 11/340 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P  Y +N L+  LC  G+  +A  V DE  +R      V++  L+   CK     +  +L
Sbjct: 30  PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 89

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PD+ TY+ ++NG+C+E R+DDA   L  +   G  PN V +  ++ G C 
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 149

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R       ++A +++ EM   G  P+ +T+ +L+   C++G +E AL++ +++ K G 
Sbjct: 150 AER------WEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 203

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +++++  L+  FC+  K+ +A   L  M+  G  PD  +Y  ++   C++G+      
Sbjct: 204 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 263

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL +++  G  P + +YN +++GL K G+ K A  LL+ M+  G+ PD ITY+ +  G C
Sbjct: 264 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 323

Query: 427 KHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462
           +    ED    F K+Q + G+  +   Y +++    K R+
Sbjct: 324 REDRIEDAIRAFGKVQ-DMGIRPNTVLYNAIILGLCKRRE 362



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 162/311 (52%), Gaps = 6/311 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+ D G +P +  +NV+++ +C+EG++ DA          G     VS+N ++ G C A+
Sbjct: 92  EMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAE 151

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++   L   M   G  P+V T++ LI+ LC++  ++ A  +L ++ + G TPN + + 
Sbjct: 152 RWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYN 211

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+   CK  ++D      +A   +D M + G  PD ++Y  LL   C+ G+++ A+++ 
Sbjct: 212 PLLHAFCKQKKMD------KAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 265

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++  +G     +++  +I G  + GK  EA  +L EM+  GL+PD  TY+ +    C+ 
Sbjct: 266 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 325

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              +   R   +++  G  P    YNA++ GLCK  +  +A  L   M+  G +P++ TY
Sbjct: 326 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 385

Query: 419 NILLEGHCKHG 429
            IL+EG    G
Sbjct: 386 TILIEGLAYEG 396



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 154/294 (52%), Gaps = 12/294 (4%)

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           +++N ++ G+C A  LD   RL + M    + PD YTY+ LI GLC   R  +A  +L E
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M  R   P+ V +T L++  CK          K+A K++DEM   G  PD +TY ++++G
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRS------GYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 111

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            C+EG ++ A++  K +   G E + V++  ++ G C   +  +AE ++ EM + G  P+
Sbjct: 112 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 171

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
             T+ M+I   C+ G  +    +L+++   G  P   +YN L++  CK  ++  A   LD
Sbjct: 172 VVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLD 231

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSS 458
            M+  G  PD ++YN LL   C+ G  +   +L  +   + D  C   L+S ++
Sbjct: 232 LMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ---LKDKGCAPVLISYNT 282



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 150/291 (51%), Gaps = 6/291 (2%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F   +  YG  P+   +N+++  LC   + +DA+ +  E G++G     V+FN LI+  C
Sbjct: 124 FLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC 183

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   ++    +   +   G  P+  +Y+ L++  CK+ ++D A   L  M  RG  P+ V
Sbjct: 184 RKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIV 243

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + TL+   C++G +D+A ++      + ++   G  P  I+Y  ++DG  K G  + AL
Sbjct: 244 SYNTLLTALCRSGEVDVAVEL------LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 297

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++  EM+ +G++ D + ++ + +G CR  ++ +A R   ++  +G++P+   Y  +I   
Sbjct: 298 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 357

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           CK  +T +   L   M  +G +P   TY  L+ GL   G +K A  LLD +
Sbjct: 358 CKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 6/250 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  FN+L+  LC++G ++ A  V ++  K G    ++S+N L++  CK K +D+ 
Sbjct: 167 GCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKA 226

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                +M   G  PD+ +Y+ L+  LC+   +D A  LLH++ ++G  P  + + T+IDG
Sbjct: 227 MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 286

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K      AG  KEA ++++EM + GL PD ITY+ +  G C+E  +E A+    ++  
Sbjct: 287 LTK------AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQD 340

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI  + V + A+I G C+  +   A  +   M+  G  P+++TYT++I+     G  K 
Sbjct: 341 MGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKE 400

Query: 364 GFRLLKEMRS 373
              LL E+ S
Sbjct: 401 ARDLLDELCS 410



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 6/237 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + R  L    L    +I  YG +P+   +N L+H  CK+ K+  A    D    RG
Sbjct: 178 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 237

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            +   VS+NTL+   C++  +D    L   ++  G  P + +Y+ +I+GL K  +  +A 
Sbjct: 238 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 297

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL+EM  +GL P+ + ++T+  G C+  RI+   D   A   V +M   G+ P+ + Y 
Sbjct: 298 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIE---DAIRAFGKVQDM---GIRPNTVLYN 351

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
            ++ G CK  +  SA+D+   MI  G   +   +T LI G    G + EA  +L E+
Sbjct: 352 AIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F   ++  G  P +  +N L+  LC+ G++  A  +  +   +G     +S+NT+I+
Sbjct: 226 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVID 285

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  KA    E   L + M   G++PD+ TYS +  GLC+E+R++DA     ++ + G+ P
Sbjct: 286 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP 345

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V++  +I G CK      A D+         M  NG  P++ TYTIL++G   EG ++
Sbjct: 346 NTVLYNAIILGLCKRRETHSAIDL------FAYMIGNGCMPNESTYTILIEGLAYEGLIK 399

Query: 293 SALDIRKEMIKRG-------IELDNVAF 313
            A D+  E+  R        + L +VAF
Sbjct: 400 EARDLLDELCSRAGEEILLDVHLIDVAF 427



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 1/201 (0%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           LLH    +K M   A  F  ++ +RG +   +  + L+      G +D A++    L+  
Sbjct: 213 LLHAFCKQKKM-DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDK 271

Query: 89  YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148
                      +ID + +       L    E++  G  P +  ++ +   LC+E +I+DA
Sbjct: 272 GCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDA 331

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
              F +    G+    V +N +I G CK +       L + M G+G  P+  TY+ LI G
Sbjct: 332 IRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEG 391

Query: 209 LCKENRLDDAELLLHEMCERG 229
           L  E  + +A  LL E+C R 
Sbjct: 392 LAYEGLIKEARDLLDELCSRA 412


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 170/331 (51%), Gaps = 8/331 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P    +N  +H L K G   +A     E  +R      V ++ +++  C+   +D
Sbjct: 303 DSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMD 362

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +   + + M   G  PDV TY+++INGLC+E ++D A+ +L +M + G  PN V +T L+
Sbjct: 363 KAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALL 422

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G CKNG      +  EAR++++        P+ ITY++L+ GF +EG    A D+ +EM
Sbjct: 423 NGLCKNG------NSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREM 476

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           IK+G     V    LI   C+  KV EA+R + + L  G   +   +T VI  FC+  D 
Sbjct: 477 IKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDL 536

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    LL +M      P V TY  +++ L K G+++ A  L   ML +G +P  +TY  +
Sbjct: 537 EAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTV 596

Query: 422 LEGHCKHGNPEDFDKLQSEKGLVSDYACYTS 452
           +  +C+ G  ED  KL  +  ++S   C T+
Sbjct: 597 IHQYCRMGRVEDLLKLLEK--MLSRQECRTA 625



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            F  +M    + GK+++A        K G+       NT I+       LD+  R    M
Sbjct: 171 AFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM 230

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +   + P+V TY+ LI G C  +RL+DA  L+ EM  +G +P+ + + T++   CK  RI
Sbjct: 231 QIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRI 290

Query: 251 DMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
                 KE R ++++M  +  L PD++TY   +    K G  + AL+  +E  +R   +D
Sbjct: 291 ------KELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVD 344

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V ++A++  FCR G++ +A+ ++ EM   G  PD  TYT VI+  C+        ++L+
Sbjct: 345 KVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLR 404

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M   G  P   +Y AL+NGLCK+G    A  +++   +   +P+ ITY++L+ G  + G
Sbjct: 405 QMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREG 464

Query: 430 NPED 433
              +
Sbjct: 465 KSSE 468



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 171/359 (47%), Gaps = 8/359 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G  D+A++  R   +  FR+   G   ++    R            E+   G  P V  +
Sbjct: 324 GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTY 383

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
             +++ LC+E K+  A+ +  +  K G     VS+  L+NG CK  N  E   + ++ E 
Sbjct: 384 TSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEE 443

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P+  TYS L++G  +E +  +A  L+ EM ++G  P  V    LI   C+  ++D 
Sbjct: 444 XWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVD- 502

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                EA++ +++   NG   + + +T ++ GFC++ DLE+AL +  +M       D V 
Sbjct: 503 -----EAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVT 557

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +T +I    + G++ EA ++  +ML+VG  P   TY  VI  +C+ G  +   +LL++M 
Sbjct: 558 YTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKML 617

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           S         YN ++  LC  G L+ A  LL  +L      D  T ++L+E +   G P
Sbjct: 618 SRQECRT--AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIP 674



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 153/306 (50%), Gaps = 7/306 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P + + N  +H L    ++  A    +      +    +++N LI G+C    L++ 
Sbjct: 199 GIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDA 258

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIFTTLID 242
             L + M   G  PD  +Y  ++  LCKE R+ +  LL+ +M  +  L P+ V + T + 
Sbjct: 259 XELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVH 318

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              K+G  D      EA + + E        DK+ Y+ ++  FC+EG ++ A +I  EM 
Sbjct: 319 MLSKHGHGD------EALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMF 372

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G   D V +T++I+G C+  KV +A++MLR+M K G KP+  +YT +++  CKNG++ 
Sbjct: 373 SKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSL 432

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               ++        +P   TY+ LM+G  + G+   A  L+  M+  G  P  +  N+L+
Sbjct: 433 EAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLI 492

Query: 423 EGHCKH 428
           +  C+ 
Sbjct: 493 QSLCQE 498



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P+    N+L+  LC+E K+ +A+   ++    G     V+F T+I+G C+  
Sbjct: 475 EMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKD 534

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    L   M  S   PDV TY+ +I+ L K+ R+++A  L  +M   G  P  V + 
Sbjct: 535 DLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYR 594

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I  +C+ GR++      +  K++++M +      +  Y  +++  C  G+LE A  + 
Sbjct: 595 TVIHQYCRMGRVE------DLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKLL 646

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
            ++++   ++D      LI  +   G  + +  +   M    L PD
Sbjct: 647 GKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPD 692



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 4/191 (2%)

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D I Y  +L+   K    + A  + + M KR IE    AF  ++  + R GK+  A R L
Sbjct: 133 DPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXL 192

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
             M K G++PD +     I             R L+ M+     P V TYN L+ G C  
Sbjct: 193 TMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDL 252

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF----DKLQSEKGLVSDYAC 449
            +L++A  L+  M   G  PD I+Y  ++   CK    ++     +K+  +  L+ D   
Sbjct: 253 HRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVT 312

Query: 450 YTSLVSKSSKY 460
           Y + V   SK+
Sbjct: 313 YNTFVHMLSKH 323



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P+   Y ++   + + G L +A+     M K GIE D       I     G ++ +A R 
Sbjct: 169 PEAFGYVMV--SYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF 226

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L  M  V + P+  TY  +I  +C     +    L+ EM   G  P   +Y  +M  LCK
Sbjct: 227 LERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCK 286

Query: 393 HGQLKNANMLLDTML-DLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYA 448
             ++K   +L++ ML D  ++PD +TYN  +    KHG+ +   +F +   E+    D  
Sbjct: 287 EKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKV 346

Query: 449 CYTSLV 454
            Y+++V
Sbjct: 347 GYSAIV 352


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 171/340 (50%), Gaps = 13/340 (3%)

Query: 117 YLEIL-DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +LE + + G SP V     L+ + CK G+ K+A  +     + G      S+N LI+G+C
Sbjct: 101 FLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYC 160

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K+  ++E  R   V++  G+ P+  TY A++  LC   +L  A  +L    +    P+ V
Sbjct: 161 KSGEIEEALR---VLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVV 217

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
             T LID  CK   +       +A K+ +EM   G  PD +TY +L+ GFCK G L+ A+
Sbjct: 218 TCTVLIDATCKESGVG------QAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAI 271

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
              K++   G + D ++   ++   C GG+ ++A ++L  ML+ G  P   T+ ++I+  
Sbjct: 272 RFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFL 331

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G       +L+ M   GH P   ++N L+ G C    +  A   L+ M+  G  PD 
Sbjct: 332 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDI 391

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
           +TYNILL   CK G  +D   + S+   +S   C  SL+S
Sbjct: 392 VTYNILLTALCKDGKVDDAVVILSQ---LSSKGCSPSLIS 428



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 184/415 (44%), Gaps = 18/415 (4%)

Query: 49  ILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCF--RLLRKHYFRIPARGCRCLIDRMMR 106
           +L+  G        DA++    D G L  A+Q    +L  K Y  +    C  LID   +
Sbjct: 171 VLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVT--CTVLIDATCK 228

Query: 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
            +     +  + E+ + G  P V  +NVL+   CK G++ +A     +    G     +S
Sbjct: 229 ESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVIS 288

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
            N ++   C      +  +L + M   G  P V T++ LIN LC++  L  A  +L  M 
Sbjct: 289 HNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMP 348

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
           + G TPN   F  LI G C    ID A +  E       M + G  PD +TY ILL   C
Sbjct: 349 KHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEI------MVSRGCYPDIVTYNILLTALC 402

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
           K+G ++ A+ I  ++  +G     +++  +I G  + GK   A  +L EM   GLKPD  
Sbjct: 403 KDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLI 462

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           T T V+    + G  +   +    ++     P    YN+++ GLCK  Q   A   L  M
Sbjct: 463 TCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADM 522

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSS 458
           +  G  P + TY  L++G    G  ED  KL +E   +GLV       SLV K S
Sbjct: 523 VAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVK-----RSLVEKVS 572



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 189/408 (46%), Gaps = 13/408 (3%)

Query: 23  HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82
            S+ R L  LI  + G     S F   +  +G     +   AL+  +  +G   +A Q  
Sbjct: 80  ESEIRHLRRLI--RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIM 137

Query: 83  RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-YGYSPSVYVFNVLMHKLCK 141
            +L +    I       LI    ++      +   L +LD  G SP+   ++ ++  LC 
Sbjct: 138 GILEESGAVIDVTSYNVLISGYCKSG----EIEEALRVLDRMGVSPNAATYDAVLCSLCD 193

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
            GK+K A  V     +   +   V+   LI+  CK   + +  +L + M   G +PDV T
Sbjct: 194 RGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVT 253

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ LI G CK  RLD+A   L ++   G  P+ +    ++   C  GR        +A K
Sbjct: 254 YNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGR------WMDAMK 307

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++  M   G  P  +T+ IL++  C++G L  AL++ + M K G   ++ +F  LI GFC
Sbjct: 308 LLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFC 367

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
            G  +  A   L  M+  G  PD  TY +++   CK+G       +L ++ S G  P++ 
Sbjct: 368 NGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLI 427

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +YN +++GL K G+ + A  LL+ M   G+ PD IT   ++ G  + G
Sbjct: 428 SYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREG 475



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 176/354 (49%), Gaps = 21/354 (5%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88
           L+     + G+G +  LF   +  +G     +  + L+  +   G LD+AI   R L+K 
Sbjct: 222 LIDATCKESGVGQAMKLFNE-MRNKGCKPDVVTYNVLIKGFCKGGRLDEAI---RFLKK- 276

Query: 89  YFRIPARGCR--CLIDRMMRTNLPTV-----TLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
              +P+ GC+   +   M+  +L +       +     +L  G  PSV  FN+L++ LC+
Sbjct: 277 ---LPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
           +G +  A  V +   K G    + SFN LI G C  K +D       +M   G  PD+ T
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           Y+ L+  LCK+ ++DDA ++L ++  +G +P+ + + T+IDG  K G+ ++A ++     
Sbjct: 394 YNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVEL----- 448

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
            ++EMC  GL PD IT T ++ G  +EG +  A+     + +  I  +   + ++I+G C
Sbjct: 449 -LEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLC 507

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           +  +   A   L +M+  G KP +ATYT +I      G  +   +L  E+ S G
Sbjct: 508 KSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 6/308 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  ++  YG  P V   N+++  LC  G+  DA  +     ++G   + V+FN LIN  C
Sbjct: 273 FLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLC 332

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +   L +   +  +M   G  P+  +++ LI G C    +D A   L  M  RG  P+ V
Sbjct: 333 QKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIV 392

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  L+   CK+G++D      +A  I+ ++ + G +P  I+Y  ++DG  K G  E A+
Sbjct: 393 TYNILLTALCKDGKVD------DAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAV 446

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           ++ +EM  +G++ D +  T+++ G  R GKV EA +    + +  ++P+   Y  +I   
Sbjct: 447 ELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGL 506

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK+  T      L +M + G  P   TY  L+ G+   G  ++A+ L + +   G+V   
Sbjct: 507 CKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVKRS 566

Query: 416 ITYNILLE 423
           +   + LE
Sbjct: 567 LVEKVSLE 574



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 55/98 (56%)

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           +NG+ + G R L+ M + G  P V    AL+   CK G+ KNA+ ++  + + G V D  
Sbjct: 91  RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVT 150

Query: 417 TYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
           +YN+L+ G+CK G  E+  ++    G+  + A Y +++
Sbjct: 151 SYNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVL 188


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 180/389 (46%), Gaps = 26/389 (6%)

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
           VY      +  +  F  + +  F    R C  ++  +  + +       Y  ++++G  P
Sbjct: 177 VYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMP 236

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  FN ++    K G ++    ++ E  +R +  + V++N LING  K   ++E  R  
Sbjct: 237 TVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFH 296

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M  SG     Y+++ LI G CK+   DDA  +  EM   G+ P    +   I   C  
Sbjct: 297 GDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDF 356

Query: 248 GRIDMA-------------------------GDMKEARKIVDEMCTNGLNPDKITYTILL 282
           GRID A                         G   EA  + D++    ++P  +TY  L+
Sbjct: 357 GRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLI 416

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG C+ G+LE A  +++EM  + I  D + +T L+ GF + G +  A  +  EML+ G+K
Sbjct: 417 DGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIK 476

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEM-RSDGHLPAVETYNALMNGLCKHGQLKNANM 401
           PD   YT       + GD+   FRL +EM  +D H P +  YN  ++GLCK G L  A  
Sbjct: 477 PDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIE 536

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGN 430
               +  +G+VPD +TY  ++ G+ ++G 
Sbjct: 537 FQRKIFRVGLVPDHVTYTTVIRGYLENGQ 565



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 169/323 (52%), Gaps = 7/323 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L    +P V  +N LMH   K GK  +A ++FD+     +H + V++NTLI+G C++ 
Sbjct: 364 ELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESG 423

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           NL+   RLK  M    + PDV TY+ L+ G  K   L  A  +  EM  +G+ P+   +T
Sbjct: 424 NLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYT 483

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEM-CTNGLNPDKITYTILLDGFCKEGDLESALDI 297
           T   G  +       GD  +A ++ +EM  T+   PD   Y + +DG CK G+L  A++ 
Sbjct: 484 TRAVGELR------LGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEF 537

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           ++++ + G+  D+V +T +I G+   G+   A  +  EML+  L P   TY ++I    K
Sbjct: 538 QRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAK 597

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  +  F+   EM+  G  P V T+NAL+ G+CK G +  A   L  M + G+ P+  +
Sbjct: 598 AGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYS 657

Query: 418 YNILLEGHCKHGNPEDFDKLQSE 440
           Y +L+  +C     E+  KL  E
Sbjct: 658 YTMLISKNCDFEKWEEVVKLYKE 680



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 167/370 (45%), Gaps = 49/370 (13%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ PSV   N+++  L     +  A  V++   + G+  T ++FNT+++   KA +L+  
Sbjct: 198 GFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERV 257

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++   M+   +     TY+ LING  K  ++++A     +M   G       F  LI+G
Sbjct: 258 DKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEG 317

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           +CK G  D      +A  + DEM   G+ P   TY I +   C  G ++ A    +E++ 
Sbjct: 318 YCKQGLFD------DAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDA----RELLS 367

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
                D V++  L+ G+ + GK VEA  +  ++    + P   TY  +ID  C++G+ + 
Sbjct: 368 SMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEG 427

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD--------- 414
             RL +EM +    P V TY  L+ G  K+G L  A  + D ML  G+ PD         
Sbjct: 428 AQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAV 487

Query: 415 --------------------------DIT-YNILLEGHCKHGN---PEDFDKLQSEKGLV 444
                                     D+T YN+ ++G CK GN     +F +     GLV
Sbjct: 488 GELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLV 547

Query: 445 SDYACYTSLV 454
            D+  YT+++
Sbjct: 548 PDHVTYTTVI 557



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 132/277 (47%), Gaps = 7/277 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V  +  L+    K G +  A  V+DE  ++G+     ++ T   G  +  + D+ FRL
Sbjct: 442 PDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRL 501

Query: 187 KSVMEGSGMR-PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
              M  +    PD+  Y+  I+GLCK   L  A     ++   GL P+ V +TT+I G+ 
Sbjct: 502 HEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYL 561

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           +NG+  MA      R + DEM    L P  ITY +L+ G  K G LE A     EM KRG
Sbjct: 562 ENGQFKMA------RNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRG 615

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + +   AL+ G C+ G + EA R L +M + G+ P+  +YTM+I   C     +   
Sbjct: 616 VRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVV 675

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           +L KEM      P   T+ AL   L K  + +    L
Sbjct: 676 KLYKEMLDKEIEPDGYTHRALFKHLEKDHESREVEFL 712



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 6/170 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            + F  +I   G  P    +  ++    + G+ K A+ ++DE  ++ L+ + +++  LI 
Sbjct: 534 AIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIY 593

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           GH KA  L++ F+  + M+  G+RP+V T++AL+ G+CK   +D+A   L +M E G+ P
Sbjct: 594 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPP 653

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
           N   +T LI  +C   +       +E  K+  EM    + PD  T+  L 
Sbjct: 654 NKYSYTMLISKNCDFEK------WEEVVKLYKEMLDKEIEPDGYTHRALF 697



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 6/213 (2%)

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
           ++P + ++NV +  LCK G +  A     +  + GL    V++ T+I G+ +        
Sbjct: 511 HAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMAR 570

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L   M    + P V TY  LI G  K  RL+ A     EM +RG+ PN +    L+ G 
Sbjct: 571 NLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGM 630

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G ID      EA + + +M   G+ P+K +YT+L+   C     E  + + KEM+ +
Sbjct: 631 CKAGNID------EAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDK 684

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREML 337
            IE D     AL     +  +  E E + R +L
Sbjct: 685 EIEPDGYTHRALFKHLEKDHESREVEFLERLLL 717



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 1/191 (0%)

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           ++M   G  P      I+L        +  A  + + MI+ GI    + F  ++    + 
Sbjct: 192 EKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKA 251

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G +   +++  EM +  ++  + TY ++I+ F KNG  +   R   +MR  G      ++
Sbjct: 252 GDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSF 311

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL 443
           N L+ G CK G   +A  + D ML+ G+ P   TYNI +   C  G  +D  +L S    
Sbjct: 312 NPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMA- 370

Query: 444 VSDYACYTSLV 454
             D   Y +L+
Sbjct: 371 APDVVSYNTLM 381



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 33/216 (15%)

Query: 25  QARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84
            A DL    V   G+    +L  +I   R     GLV D +    V  G+L++    F++
Sbjct: 511 HAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENG--QFKM 568

Query: 85  LRKHYFRIPARGCRCLIDRMMRTNL-PTVTLGFYL------------------EILDYGY 125
            R  Y            D M+R  L P+V   F L                  E+   G 
Sbjct: 569 ARNLY------------DEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGV 616

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P+V   N L++ +CK G I +A     +  + G+     S+  LI+ +C  +  +E  +
Sbjct: 617 RPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVK 676

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
           L   M    + PD YT+ AL   L K++   + E L
Sbjct: 677 LYKEMLDKEIEPDGYTHRALFKHLEKDHESREVEFL 712


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 189/365 (51%), Gaps = 16/365 (4%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA+  F  L +     P      ++  ++++      L    ++   G  P++   N+
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING----------HCKAKNLDEGF 184
           L++  C+ G I  A  V  +  K G     ++ NTLI G          HC    L +  
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L + M    + PDVYT++ L++G CKE R+ +A+ +L  M  +G+ P  V + +L+DG+
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                  +   + +A+ I + M   G++PD  +Y+IL++GFCK   ++ A+++ KEM  +
Sbjct: 223 F------LVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHK 276

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            I  + V +++LI G C+ GK+  A +++ EM   G  P+  TY+ ++D  CKN      
Sbjct: 277 QIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNA 336

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             LL +M++ G  P + TY  L+ GLC+ G+L++A  + + +L  G   +  TY ++++G
Sbjct: 337 IALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQG 396

Query: 425 HCKHG 429
            C  G
Sbjct: 397 FCDKG 401



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 162/283 (57%), Gaps = 6/283 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P VY F +L+   CKEG++K+A+ V      +G+    V++N+L++G+   K +++   
Sbjct: 174 NPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKS 233

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           + + M   G+ PD+ +YS LING CK   +D+A  LL EM  + + PN V +++LIDG C
Sbjct: 234 IFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLC 293

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+G+I  A       K+VDEM   G  P+ +TY+ +LD  CK   +++A+ +  +M  +G
Sbjct: 294 KSGKISYA------LKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQG 347

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+ +   +T LI G C+ GK+ +A ++  ++L  G   +  TYT++I  FC  G      
Sbjct: 348 IQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEAL 407

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
            LL +M  +G +P  +TY  ++  L K  + + A  LL  M++
Sbjct: 408 TLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 174/317 (54%), Gaps = 7/317 (2%)

Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204
           + DA  +F+   ++      + FN ++    K+K+      L   ME  G++P++   + 
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID----MAGDMKEAR 260
           LIN  C+   +  A  +L ++ + G  PN +   TLI G C NG+I     + G +K+A 
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
            + ++M    +NPD  T+TIL+DGFCKEG ++ A ++   M+ +GI+   V + +L+ G+
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380
               +V +A+ +   M ++G+ PD  +Y+++I+ FCK         LLKEM     +P V
Sbjct: 223 FLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNV 282

Query: 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            TY++L++GLCK G++  A  L+D M D G  P+ +TY+ +L+  CK+   ++   L ++
Sbjct: 283 VTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQ 342

Query: 441 ---KGLVSDYACYTSLV 454
              +G+  +   YT L+
Sbjct: 343 MKNQGIQPNMYTYTILI 359



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 166/335 (49%), Gaps = 16/335 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  +  +L    +P    FN ++  L K         +  +   RG+    V+ N LIN
Sbjct: 46  AVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILIN 105

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR----------LDDAELLL 222
             C+  ++   F + + +   G +P+  T + LI GLC   +          L DA  L 
Sbjct: 106 SFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLF 165

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
           ++M    + P+   FT L+DG CK GR+      KEA+ ++  M   G+ P  +TY  L+
Sbjct: 166 NKMILENINPDVYTFTILVDGFCKEGRV------KEAKNVLAMMMIQGIKPGVVTYNSLM 219

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG+     +  A  I   M + G+  D  +++ LI+GFC+   + EA  +L+EM    + 
Sbjct: 220 DGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQII 279

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  TY+ +ID  CK+G      +L+ EM   G  P + TY+++++ LCK+ Q+ NA  L
Sbjct: 280 PNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIAL 339

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           L  M + G+ P+  TY IL++G C+ G  ED  K+
Sbjct: 340 LTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKV 374



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 177/354 (50%), Gaps = 16/354 (4%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI----------K 146
           C  LI+   +            +IL  GY P+    N L+  LC  GKI          K
Sbjct: 100 CNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLK 159

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           DA  +F++     ++    +F  L++G CK   + E   + ++M   G++P V TY++L+
Sbjct: 160 DAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLM 219

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G     +++ A+ + + M + G++P+   ++ LI+G CK   I M   M EA +++ EM
Sbjct: 220 DGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCK---IKM---MDEAMELLKEM 273

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
               + P+ +TY+ L+DG CK G +  AL +  EM  RG   + V +++++   C+  +V
Sbjct: 274 HHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQV 333

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A  +L +M   G++P+  TYT++I   C++G  +   ++ +++   GH   V TY  +
Sbjct: 334 DNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVM 393

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           + G C  G    A  LL  M D G +P+  TY I++    K    E  +KL  E
Sbjct: 394 IQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCE 447



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 6/181 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  ++ L+  LCK GKI  A  + DE   RG     V+++++++  CK   +D    L
Sbjct: 280 PNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIAL 339

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M+  G++P++YTY+ LI GLC+  +L+DA  +  ++  +G   N   +T +I G C 
Sbjct: 340 LTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCD 399

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G  D      EA  ++ +M  NG  P+  TY I++    K+ + E A  +  EMI+   
Sbjct: 400 KGLFD------EALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNF 453

Query: 307 E 307
           +
Sbjct: 454 D 454



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 48/248 (19%)

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+ +A  + + +      P  I +  +L    K     + L + ++M  RGI+ + V   
Sbjct: 42  DVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCN 101

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLK-------------------------------- 342
            LI+ FC+ G +  A  +L ++LK+G K                                
Sbjct: 102 ILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDA 161

Query: 343 -------------PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
                        PD  T+T+++D FCK G  K    +L  M   G  P V TYN+LM+G
Sbjct: 162 VDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDG 221

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSD 446
                Q+  A  + +TM  LGV PD  +Y+IL+ G CK    ++  +L  E   K ++ +
Sbjct: 222 YFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPN 281

Query: 447 YACYTSLV 454
              Y+SL+
Sbjct: 282 VVTYSSLI 289



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D + + +     +    ++ + G  P++Y + +L+  LC+ GK++DA+ VF++   +G
Sbjct: 323 ILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKG 382

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
            +    ++  +I G C     DE   L S ME +G  P+  TY  +I  L K++  + AE
Sbjct: 383 HNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAE 442

Query: 220 LLLHEMCE-----RGLTPNDVIFTTLIDG 243
            LL EM E     R    ND+I +  + G
Sbjct: 443 KLLCEMIETNFDGRVALTNDLIASIWVTG 471



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 56/123 (45%)

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           + + +  + F     V +A  +   +L+    P +  +  ++    K+    T   L ++
Sbjct: 28  IPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQK 87

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M   G  P +   N L+N  C+ G + +A  +L  +L +G  P+ IT N L++G C +G 
Sbjct: 88  MEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGK 147

Query: 431 PED 433
             D
Sbjct: 148 IHD 150


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 180/361 (49%), Gaps = 23/361 (6%)

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            ++   +  IL  GY      F  L+  LC +G+I  A    D+   +G     VS+ TL
Sbjct: 64  ALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTL 123

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ING CK             ++G  ++PDV  Y+ +I+GLCK+  ++DA  L  EM  + +
Sbjct: 124 INGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRI 183

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+ V + TLI G C      +   +K+A  ++ +M    +NP   T++IL+D FCKEG 
Sbjct: 184 CPSVVTYNTLICGLC------IMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGK 237

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV----------- 339
           ++ A ++   M+K  ++ + V + +L+ G      V +A+ +   M+K+           
Sbjct: 238 MKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEM 297

Query: 340 ---GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
               + PD   Y  +ID  CK+G T    + + EM   G  P + TYN+L++ LCK+  +
Sbjct: 298 HFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHV 357

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A  LL  + D G+ P   TYNIL+ G CK G  +D +K+  +   KG  +D   Y ++
Sbjct: 358 DKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAM 417

Query: 454 V 454
           +
Sbjct: 418 I 418



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 182/390 (46%), Gaps = 26/390 (6%)

Query: 34  VSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAI-QCFRLLRKHYFRI 92
           + KKG GS A  F +++  +G  L G +  AL        F D  + Q F+L +  Y   
Sbjct: 73  ILKKGYGSDAITFTTLI--KGLCLKGEIHKAL-------HFHDKVVAQGFKLNQVSY--- 120

Query: 93  PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152
                  LI+ + +       L F   I      P V ++N ++  LCK+  + DA  ++
Sbjct: 121 -----GTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLY 175

Query: 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212
            E   + +  + V++NTLI G C    L +   L   M    + P VYT+S LI+  CKE
Sbjct: 176 FEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKE 235

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGH--------CKNGRIDMAGDMKEARKIVD 264
            ++ +A+ +   M +  + PN V + +L+DGH         K+    M   + EA  + +
Sbjct: 236 GKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFE 295

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM    + PD + Y  L+DG CK G    AL    EM  RG   D   + +L+   C+  
Sbjct: 296 EMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNY 355

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            V +A  +L ++   G++P   TY ++I+  CK+G  K   ++ +++   G+   V TYN
Sbjct: 356 HVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYN 415

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           A++ G CK G       ++  M D G  PD
Sbjct: 416 AMIKGFCKKGLFDETLAMVSKMKDSGCSPD 445



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P ++ +  ++  L K N       L  +M   GL  N V  + LI+ + + G+  ++   
Sbjct: 10  PSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFS- 68

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
                +   +   G   D IT+T L+ G C +G++  AL    +++ +G +L+ V++  L
Sbjct: 69  -----VFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTL 123

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I+G C+ G+   A   LR +    ++PD   Y  +ID  CK+      F L  EM +   
Sbjct: 124 INGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRI 183

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            P+V TYN L+ GLC   QLK+A  LL  M+   + P   T++IL++  CK G
Sbjct: 184 CPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEG 236



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 120/257 (46%), Gaps = 11/257 (4%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T++ +S ++          +A+++  +++ K+ +  +   + S+++  G HL  +V  A 
Sbjct: 221 TVYTFSILIDAFCKEGKMKEAKNVFAVMM-KEDVKPNIVTYNSLMD--GHHLVNVVKKAK 277

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
            I    +  +D+A+  F  +              LID + ++      L F  E+   G 
Sbjct: 278 SIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQ 337

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
            P ++ +N L+  LCK   +  A  +  +   +G+  +  ++N LING CK+  L +  +
Sbjct: 338 PPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEK 397

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN----DVIFTTLI 241
           +   +   G   DVYTY+A+I G CK+   D+   ++ +M + G +P+    ++I  +L 
Sbjct: 398 VFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLF 457

Query: 242 DGHCKNGRIDMAGDMKE 258
           D     G  D AG  +E
Sbjct: 458 D----KGENDKAGKFRE 470


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 185/364 (50%), Gaps = 9/364 (2%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           +L F + A+Q F  +     +  A     +I  + + N   +   ++ +++  G  P   
Sbjct: 26  ELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKV 85

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + VL+H L K  K +    +F+E   +G     V++ T++NG+CKA  +D+   L   +
Sbjct: 86  TYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRL 145

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +G+G  P    YS LI+GLCK +R ++A  L  EM   G   + +++T+ I G CK G++
Sbjct: 146 KGTGRSPSGSLYSTLIDGLCKHDRHEEARELF-EMAA-GDVQDVIVYTSFISGLCKAGKL 203

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D      EA+ +  +M   G  PD ++Y +++   CK+  +  A ++  + ++R      
Sbjct: 204 D------EAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGV 257

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLK-PDDATYTMVIDCFCKNGDTKTGFRLLK 369
              T L+ G C+  +V EA  +L  ML+ G + P   TY+ VID  CK       + +L+
Sbjct: 258 PVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQ 317

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +MR  G +P V TY A+++  CK G+L  A  L   M + G   D + YNIL+ G+C+  
Sbjct: 318 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAA 377

Query: 430 NPED 433
             ++
Sbjct: 378 KVDE 381



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 186/359 (51%), Gaps = 12/359 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI ++   N     L  + +++D    P  +++ V++  LCK  K+  A   F++  + G
Sbjct: 20  LIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSG 79

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  L++   KA   ++G ++   M   G  P++ TY+ ++NG CK  R+D A 
Sbjct: 80  CLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQAL 139

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+  +   G +P+  +++TLIDG CK+ R       +EAR++  EM    +  D I YT
Sbjct: 140 SLMRRLKGTGRSPSGSLYSTLIDGLCKHDR------HEEARELF-EMAAGDVQ-DVIVYT 191

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
             + G CK G L+ A  +  +MI+ G   D V++  +I   C+  +V EA+ ++ + ++ 
Sbjct: 192 SFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMER 251

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG-HLPAVETYNALMNGLCKHGQLKN 398
              P     T+++D  CK+   +    +L+ M   G   P+V TY+A+++GLCK  +L +
Sbjct: 252 KCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDD 311

Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           A ++L  M   G VPD +TY  +++  CK G  ++  +L     E+G  SD   Y  L+
Sbjct: 312 AYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILI 370



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 43/343 (12%)

Query: 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213
           E    G+  T V+F +LI   C+    ++  ++   M    ++PD + Y+ +I  LCK N
Sbjct: 4   EMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKIN 63

Query: 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
           +LD A     +M + G  P+ V +T L+    K      A   ++  +I +EM + G +P
Sbjct: 64  KLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFK------ACKWEQGHQIFEEMLSKGHSP 117

Query: 274 DKITYTILLDGFCKEGDLESALDI---------------------------RKEMIKRGI 306
           + +TY  +++G+CK G ++ AL +                           R E  +   
Sbjct: 118 ELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF 177

Query: 307 EL------DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           E+      D + +T+ ISG C+ GK+ EA+ +  +M++ G  PD  +Y ++I   CK+  
Sbjct: 178 EMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNR 237

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG-VVPDDITYN 419
                 L+ +      +P V     L++GLCK  +++ A ++L+ ML+ G   P  +TY+
Sbjct: 238 VSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYS 297

Query: 420 ILLEGHCKHGNPED-FDKLQSEK--GLVSDYACYTSLVSKSSK 459
            +++G CK    +D +  LQ  +  G V D   YT+++    K
Sbjct: 298 AVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCK 340



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 9/215 (4%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-K 187
           V V+   +  LCK GK+ +A+ V  +  + G     VS+N +I   CK   + E   L  
Sbjct: 187 VIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMD 246

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCK 246
             ME   M P V   + L++GLCK  R+++A ++L  M E G   P+ V ++ +IDG CK
Sbjct: 247 QAMERKCM-PGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCK 305

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
             R+D      +A  ++ +M   G  PD +TYT ++D FCK G L+ A ++ + M +RG 
Sbjct: 306 ADRLD------DAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGC 359

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
             D VA+  LI G+CR  KV EA  M+ EM   G+
Sbjct: 360 ASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 1/195 (0%)

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++ EM   G+ P  +T+  L+   C+      AL I  +MI   ++ D   +T +I   C
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           +  K+  A     +M++ G  PD  TYT+++    K    + G ++ +EM S GH P + 
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL-QSE 440
           TY  ++NG CK G++  A  L+  +   G  P    Y+ L++G CKH   E+  +L +  
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMA 180

Query: 441 KGLVSDYACYTSLVS 455
            G V D   YTS +S
Sbjct: 181 AGDVQDVIVYTSFIS 195



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 7/146 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFR 185
           P V V  VL+  LCK  ++++A ++ +   + G  A + V+++ +I+G CKA  LD+ + 
Sbjct: 255 PGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYI 314

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M  +G  PDV TY+A+I+  CK  RLD+A  L   M ERG   + V +  LI G+C
Sbjct: 315 VLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYC 374

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGL 271
           +  ++D      EA  +++EM   G+
Sbjct: 375 RAAKVD------EAIAMIEEMAGRGI 394



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 35/247 (14%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHL-------IVSKKGMGSSASLFASILETRGTHL----P 58
           YST++  L  H  H +AR+L  +       ++      S       + E +  H+     
Sbjct: 157 YSTLIDGLCKHDRHEEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEA 216

Query: 59  GLVLDAL---MIVYV---------DLGFLDDAIQCFRLLRKHYFRIPARGCRCLID---R 103
           G   D +   +I+Y              +D A++     RK    +P   C  L+D   +
Sbjct: 217 GCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAME-----RKCMPGVPV--CTVLVDGLCK 269

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
             R     V L   LE  D   +PSV  ++ ++  LCK  ++ DA +V  +  + G    
Sbjct: 270 SRRVEEACVILERMLEAGDR--APSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPD 327

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223
            V++  +I+  CK   LDE   L   M   G   DV  Y+ LI G C+  ++D+A  ++ 
Sbjct: 328 VVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIE 387

Query: 224 EMCERGL 230
           EM  RG+
Sbjct: 388 EMAGRGI 394


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 199/388 (51%), Gaps = 9/388 (2%)

Query: 71  DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY 130
           + G L +A++ +  +R+       R    L+  +  +      L  + E+ + G  P+VY
Sbjct: 267 EAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVY 326

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            + VL+  LCKEG++ +A  + +E  ++G+  + V FN LI  +CK   +++   +  +M
Sbjct: 327 TYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLM 386

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           E   + P+V TY+ LI G C+   +D A  LL++M E  L+P+ V + TLI G C+ G +
Sbjct: 387 ESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVV 446

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D       A ++   M  +G +PD+ T+   +   C+ G +  A  I + + ++ ++ + 
Sbjct: 447 D------SASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANE 500

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            A+TALI G+C+ GK+  A  + + ML     P+  T+ ++ID   K G  +    L+++
Sbjct: 501 HAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVED 560

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M      P + TYN L+  + K      AN +L+ ++  G  P+ +TY   ++ +C  G 
Sbjct: 561 MAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGR 620

Query: 431 PEDFDKLQ---SEKGLVSDYACYTSLVS 455
            E+ +++      +G++ D   Y  L++
Sbjct: 621 LEEAEEMVIKIKNEGVLLDSFIYNLLIN 648



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 164/303 (54%), Gaps = 8/303 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           +  L+H LC+ GK+ +A   +    + G   T  ++  L+   C++    E   L   M 
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR 317

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P+VYTY+ LI+ LCKE R+D+A  +L+EM E+G+ P+ V F  LI  +CK G   
Sbjct: 318 ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGM-- 375

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
               M++A  ++  M +  + P+  TY  L+ GFC+   ++ A+ +  +M++  +  D V
Sbjct: 376 ----MEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVV 431

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI G C  G V  A R+ R M++ G  PD  T+   + C C+ G      ++L+ +
Sbjct: 432 TYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESL 491

Query: 372 RSDGHLPAVE-TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           + + H+ A E  Y AL++G CK G++++A  L   ML    +P+ IT+N++++G  K G 
Sbjct: 492 K-EKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGK 550

Query: 431 PED 433
            +D
Sbjct: 551 VQD 553



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 169/332 (50%), Gaps = 14/332 (4%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F++ IL     P ++ +  L+   C+   ++ A  VF    +R     AVS+  LI+G C
Sbjct: 211 FFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRN----AVSYTNLIHGLC 266

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           +A  L E     + M   G  P V TY+ L+  LC+  R  +A  L  EM ERG  PN  
Sbjct: 267 EAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVY 326

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +T LID  CK GR+D      EA K+++EM   G+ P  + +  L+  +CK G +E A+
Sbjct: 327 TYTVLIDYLCKEGRMD------EALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAV 380

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            +   M  + +  +   +  LI GFCRG  +  A  +L +M++  L PD  TY  +I   
Sbjct: 381 GVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGL 440

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C+ G   +  RL + M  DG  P   T+NA M  LC+ G++  A+ +L+++ +  V  ++
Sbjct: 441 CEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANE 500

Query: 416 ITYNILLEGHCKHGNPED----FDKLQSEKGL 443
             Y  L++G+CK G  E     F ++ +E+ L
Sbjct: 501 HAYTALIDGYCKAGKIEHAASLFKRMLAEECL 532



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 175/389 (44%), Gaps = 54/389 (13%)

Query: 95  RGCR-------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           RGC         LID + +       L    E+++ G +PSV  FN L+   CK G ++D
Sbjct: 319 RGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMED 378

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
           A  V      + +     ++N LI G C+ K++D    L + M  S + PDV TY+ LI+
Sbjct: 379 AVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIH 438

Query: 208 GLCKENRLDDAELLLHEMCERGLTP----------------------------------- 232
           GLC+   +D A  L   M   G +P                                   
Sbjct: 439 GLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKA 498

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N+  +T LIDG+CK G+I+ A  +   ++++ E C     P+ IT+ +++DG  KEG ++
Sbjct: 499 NEHAYTALIDGYCKAGKIEHAASL--FKRMLAEECL----PNSITFNVMIDGLRKEGKVQ 552

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A+ + ++M K  ++     +  L+    +      A  +L  ++  G +P+  TYT  I
Sbjct: 553 DAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFI 612

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +C  G  +    ++ +++++G L     YN L+N     G L +A  +L  M   G  
Sbjct: 613 KAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCE 672

Query: 413 PDDITYNILL-----EGHCKHG-NPEDFD 435
           P  +TY+IL+     E H K G NP   D
Sbjct: 673 PSYLTYSILMKHLVIEKHKKEGSNPVGLD 701



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 142/275 (51%), Gaps = 14/275 (5%)

Query: 165 VSFNTLINGHCKAKNLDEG--FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
           ++ NT++N +CK  N+     F ++ +    G  PD++TY++L+ G C+ + ++ A  + 
Sbjct: 190 ITLNTMLNSYCKLGNMAVARLFFVRILRCEPG--PDLFTYTSLVLGYCRNDDVERACGVF 247

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
             M  R    N V +T LI G C+      AG + EA +    M  +G  P   TYT+L+
Sbjct: 248 CVMPRR----NAVSYTNLIHGLCE------AGKLHEALEFWARMREDGCFPTVRTYTVLV 297

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
              C+ G    AL +  EM +RG E +   +T LI   C+ G++ EA +ML EM++ G+ 
Sbjct: 298 CALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVA 357

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P    +  +I  +CK G  +    +L  M S    P V TYN L+ G C+   +  A  L
Sbjct: 358 PSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMAL 417

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           L+ M++  + PD +TYN L+ G C+ G  +   +L
Sbjct: 418 LNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 181/421 (42%), Gaps = 35/421 (8%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G+  SAS    ++   G        +A M+    +G + +A Q    L++ + +      
Sbjct: 444 GVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAY 503

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
             LID   +          +  +L     P+   FNV++  L KEGK++DA ++ ++  K
Sbjct: 504 TALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAK 563

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
             +  T  ++N L+    K  + D    + + +  SG +P+V TY+A I   C + RL++
Sbjct: 564 FDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEE 623

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           AE ++ ++   G+  +  I+  LI+ +   G +D       A  ++  M   G  P  +T
Sbjct: 624 AEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLD------SAFGVLRRMFGTGCEPSYLT 677

Query: 278 YTILLDGFC-----KEGDLESALDIR------------------------KEMIKRGIEL 308
           Y+IL+         KEG     LD+                         ++M + G   
Sbjct: 678 YSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVP 737

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           +   ++ LI+G C+ G++  A  +   M + G+ P +  +  ++   CK G       LL
Sbjct: 738 NLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLL 797

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
             M    HL  +E+Y  L+ GL +    + A  +  ++L  G   D++ + +L++G  K 
Sbjct: 798 DSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKT 857

Query: 429 G 429
           G
Sbjct: 858 G 858



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 35/300 (11%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  GY P+V  +   +   C +G++++A+ +  +    G+   +  +N LIN +     
Sbjct: 596 LISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGL 655

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR------------------LDDAEL- 220
           LD  F +   M G+G  P   TYS L+  L  E                    +D+ ++ 
Sbjct: 656 LDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIW 715

Query: 221 ----------LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
                     L  +M E G  PN   ++ LI+G CK GR+++A  +         M   G
Sbjct: 716 SKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYH------HMREGG 769

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
           ++P +I +  LL   CK G    A+ +   M++        ++  LI G        +AE
Sbjct: 770 ISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAE 829

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            +   +L+ G   D+  + ++ID   K G       LL  M  +G     ETY+ LM  L
Sbjct: 830 AVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQEL 889



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 13/218 (5%)

Query: 248 GRIDMAGDMKEARKIVDEMCT---NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            R  M  +M    K   EM T   N + P+ IT   +L+ +CK G++  A      +++ 
Sbjct: 162 SRFSMVDEMISLYK---EMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRC 218

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
               D   +T+L+ G+CR   V  A  +   M +     +  +YT +I   C+ G     
Sbjct: 219 EPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPR----RNAVSYTNLIHGLCEAGKLHEA 274

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
                 MR DG  P V TY  L+  LC+ G+   A  L   M + G  P+  TY +L++ 
Sbjct: 275 LEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDY 334

Query: 425 HCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
            CK G  ++  K+ +   EKG+      + +L+    K
Sbjct: 335 LCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCK 372



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           +T   + ++ + G  P++  ++ L++ LCK G++  A  ++    + G+  + +  N+L+
Sbjct: 722 ITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLL 781

Query: 172 NGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           +  CK     E   L  S+ME S +   + +Y  LI GL ++   + AE +   +   G 
Sbjct: 782 SSCCKLGMFGEAVTLLDSMMECSHL-AHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGY 840

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283
             ++V +  LIDG  K G +D      +  ++++ M  NG      TY++L+ 
Sbjct: 841 NYDEVAWKVLIDGLAKTGYVD------QCSELLNLMEKNGCRLHPETYSMLMQ 887



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 54/130 (41%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI+ + +     V    Y  + + G SPS  + N L+   CK G   +A  + D   +  
Sbjct: 745 LINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECS 804

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
             A   S+  LI G  +  N ++   +   +   G   D   +  LI+GL K   +D   
Sbjct: 805 HLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCS 864

Query: 220 LLLHEMCERG 229
            LL+ M + G
Sbjct: 865 ELLNLMEKNG 874


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 183/365 (50%), Gaps = 12/365 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+ + R +   + L    +++ +GY P V   + L++  C+  ++  A  +  +  +  
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V +NT+I+G CK   ++    L   ME  G+R D  TY++L+ GLC   R  DA 
Sbjct: 170 CKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAA 229

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L+ +M  R + PN + FT LI+   + G+        EA+K  +EM    ++PD  TY 
Sbjct: 230 RLMRDMVMRDIVPNVITFTALINAFVREGK------FLEAKKFYEEMIRRCIDPDVFTYN 283

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            ++ G C  G ++ A  I   M+ +G   D V +  LI+GFC+  +V E  +++REM + 
Sbjct: 284 SMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQR 343

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           GL  D  T+  +I  + + G       +   M   G  P + TY+ L+ GLC + +++ A
Sbjct: 344 GLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLYGLCYNWRVEKA 400

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSK 456
            +L ++M    +  D  TYNI++ G C  GN ED   L    S KGL  D   YT+++S 
Sbjct: 401 LVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISG 460

Query: 457 SSKYR 461
             + R
Sbjct: 461 FCRKR 465



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 161/328 (49%), Gaps = 6/328 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           PS+  F+ L+  + K         +F      G+     ++N +IN  C+         +
Sbjct: 67  PSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSV 126

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  PDV T S+LING C+ NR+  A  L+ +M E     + VI+ T+IDG CK
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCK 186

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G ++       A  +   M  +G+  D +TY  L+ G C  G    A  + ++M+ R I
Sbjct: 187 TGLVN------NALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDI 240

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             + + FTALI+ F R GK +EA++   EM++  + PD  TY  +I   C +G      +
Sbjct: 241 VPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQ 300

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L  M + G  P V TYN L+NG CK  ++     L+  M   G+V D +T+N +++G+ 
Sbjct: 301 ILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYF 360

Query: 427 KHGNPEDFDKLQSEKGLVSDYACYTSLV 454
           + G P+   ++ S  G   +   Y+ L+
Sbjct: 361 QAGRPDAAQEIFSRMGSRPNIRTYSILL 388



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 134/252 (53%), Gaps = 9/252 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  F  L++   +EGK  +A+  ++E  +R +     ++N++I+G C    +DE  ++
Sbjct: 242 PNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQI 301

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M   G  PDV TY+ LING CK  R+D+   L+ EM +RGL  + V F T+I G+ +
Sbjct: 302 LDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQ 361

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            GR D       A++I   M   G  P+  TY+ILL G C    +E AL + + M K  +
Sbjct: 362 AGRPD------AAQEIFSRM---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEM 412

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           ELD   +  +I G C  G V +A  +   +   GL+PD  TYT +I  FC+         
Sbjct: 413 ELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADF 472

Query: 367 LLKEMRSDGHLP 378
           L ++M+ DG LP
Sbjct: 473 LYRKMQEDGLLP 484



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 38/317 (11%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V ++N ++   CK G + +A ++F    + G+ A  V++N+L+ G C +    +  RL  
Sbjct: 174 VVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMR 233

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M    + P+V T++ALIN   +E +  +A+    EM  R + P+   + ++I G C +G
Sbjct: 234 DMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHG 293

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           ++D      EA++I+D M T G  PD +TY  L++GFCK   ++    + +EM +RG+ +
Sbjct: 294 QVD------EAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVV 347

Query: 309 DNVAFTALISGF--------------------------------CRGGKVVEAERMLREM 336
           D V F  +I G+                                C   +V +A  +   M
Sbjct: 348 DTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESM 407

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
            K  ++ D  TY +VI   C  G+ +  + L   +   G  P V TY  +++G C+    
Sbjct: 408 QKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLW 467

Query: 397 KNANMLLDTMLDLGVVP 413
             A+ L   M + G++P
Sbjct: 468 DKADFLYRKMQEDGLLP 484



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 101/226 (44%), Gaps = 20/226 (8%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66
           +  Y++M+H L  H    +A+ +L L+V                 T+G     +  + L+
Sbjct: 279 VFTYNSMIHGLCMHGQVDEAKQILDLMV-----------------TKGCFPDVVTYNTLI 321

Query: 67  IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126
             +     +D+  +  R + +    +       +I    +   P      +  +   G  
Sbjct: 322 NGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---GSR 378

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++  +++L++ LC   +++ A ++F+   K  +     ++N +I+G C   N+++ + L
Sbjct: 379 PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDL 438

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
              +   G+ PDV TY+ +I+G C++   D A+ L  +M E GL P
Sbjct: 439 FCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 13/209 (6%)

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           ID+  +M ++R +          P  + ++ LL    K  + +  + +   M   GI  D
Sbjct: 54  IDLFCNMIQSRPL----------PSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHD 103

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
              +  +I+  CR  + V A  ++ +M+K G +PD  T + +I+ FC+         L+ 
Sbjct: 104 LYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVS 163

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M        V  YN +++G CK G + NA +L   M   GV  D +TYN L+ G C  G
Sbjct: 164 KMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSG 223

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVS 455
              D  +L  +   + +V +   +T+L++
Sbjct: 224 RRSDAARLMRDMVMRDIVPNVITFTALIN 252


>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Vitis vinifera]
          Length = 580

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 180/371 (48%), Gaps = 12/371 (3%)

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           GC  +I  +         L    +++  G  P V   N L++ LCK G ++ A  +  E 
Sbjct: 133 GCVAMIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREM 192

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            + G      +FNT I G+C   N+D+   L S M  SG+ P+  TY+ LI+ LCK+  L
Sbjct: 193 LEIGPSPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLL 252

Query: 216 DDAELLLHEMCER--GLTPNDVIFTTL-IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
            DA  LL ++ +   G   +D+I +T+ +DG  K G      DM +A    DEM   G  
Sbjct: 253 KDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKG------DMVQALVHWDEMLQRGTQ 306

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
            D + Y +L+ GFC   D+ SA     EM KRG+  D   +  LISGFC+ G + EA  +
Sbjct: 307 IDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEACYI 366

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
              M K+G  PD  +Y M+I   C +GD     + L  M  +  +P    +N +++G  +
Sbjct: 367 HGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLIWNVVIDGHGR 426

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
           HG L NA  + D M+  G+ P+  TYN L+    K GN  D   ++ E    G+  D   
Sbjct: 427 HGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYPDVVT 486

Query: 450 YTSLVSKSSKY 460
           Y  L+  +  +
Sbjct: 487 YNLLIGAACNF 497



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 170/357 (47%), Gaps = 44/357 (12%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV--------------------- 151
            L  +  + + G  P+   +N+L+H LCK+G +KDA+ +                     
Sbjct: 220 ALYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTI 279

Query: 152 -----------------FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
                            +DE  +RG     V++N LI+G C  ++++  +R    M   G
Sbjct: 280 FMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRG 339

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
           + PD++TY+ LI+G CK   LD+A  +   M + G  P+ + +  +I G C      + G
Sbjct: 340 LLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLC------IHG 393

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+  A + +  M  N + P+ + + +++DG  + GDL +AL IR +M+  GI  +   + 
Sbjct: 394 DVIRANQFLVCMLENLMVPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYN 453

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           ALI    +GG +V+A  + +EML  G+ PD  TY ++I   C  G      RL  EM   
Sbjct: 454 ALIHAQIKGGNIVDAHSIKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRR 513

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
           G+ P + TY  L+ G C  G +  A  LL  +   G+  D   + IL++ +C+   P
Sbjct: 514 GYEPDIITYTELIRGFCIRGHVMEAEELLAKLQRSGLSIDHAPFQILIQKYCRTRVP 570



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 152/355 (42%), Gaps = 71/355 (20%)

Query: 176 KAKNLDEGFRLKSV-MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           + K + E   L  + + G  +  D     A+I  LC E +L  A  L ++M ++G+ P+ 
Sbjct: 107 RLKMMRESVSLTKIGLNGCTLEMDYTGCVAMIRNLCLEGKLRAALWLRNKMIQKGVIPDV 166

Query: 235 VIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDE 265
           +    L++G CK G ++ A                              ++ +A  +   
Sbjct: 167 LTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKALYLFST 226

Query: 266 MCTNGLNPDKITYTILLDGFCK-------------------------------------- 287
           M  +G+ P+K+TY IL+   CK                                      
Sbjct: 227 MANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLK 286

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
           +GD+  AL    EM++RG ++D VA+  LI GFC    +  A R   EM K GL PD  T
Sbjct: 287 KGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFT 346

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  +I  FCK G+      +   M   G  P + +Y  ++ GLC HG +  AN  L  ML
Sbjct: 347 YNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCML 406

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSK 459
           +  +VP+ + +N++++GH +HG+  +   ++ +    G+  +   Y +L+    K
Sbjct: 407 ENLMVPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIK 461



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P   ++NV++    + G + +A  + D+    G+     ++N LI+   K  N+ +   +
Sbjct: 412 PEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSI 471

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
           K  M  +G+ PDV TY+ LI   C   R+  A  L  EM  RG  P+ + +T LI G C 
Sbjct: 472 KKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTELIRGFCI 531

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
            G +       EA +++ ++  +GL+ D   + IL+  +C+      A D+ K
Sbjct: 532 RGHV------MEAEELLAKLQRSGLSIDHAPFQILIQKYCRTRVPGRAYDLTK 578


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 193/402 (48%), Gaps = 7/402 (1%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDA 64
           +L  ++ ++H L  ++    A  +L  ++   G+   A +F ++L + R       V D+
Sbjct: 114 SLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDS 173

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L   +  L    +A   F  ++ + F      C   +  ++      + L FY E+    
Sbjct: 174 LFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCK 233

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+ Y  N++M   C+ GK+     +  +  + G  AT VS+NTLI GHC+   L    
Sbjct: 234 ISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSAL 293

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +LK++M  +G++P+V T++ LI+G C+  +L +A  +  EM    L PN V + TLI+G+
Sbjct: 294 KLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGY 353

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            +       GD + A +  ++M  NG+  D +TY  L+ G CK+     A    KE+ K 
Sbjct: 354 SQQ------GDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKE 407

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  ++  F+ALI G C          + + M++ G  P++ T+ ++I  FCKN D    
Sbjct: 408 NLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDFDGA 467

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            ++L+EM          T + + NGL   G+ +    LL  M
Sbjct: 468 AQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLVKELLQEM 509



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 199/423 (47%), Gaps = 25/423 (5%)

Query: 18  VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDD 77
            +H + + A  +LH +   +   S+ S+   +L   G  LP  V DAL+  Y +    D 
Sbjct: 111 ASHSLETHA-IVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYREC---DS 166

Query: 78  AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137
             + F  L K +  +          +  R    T     ++++ DYG+ P+V   N  M 
Sbjct: 167 TPRVFDSLFKTFAHL----------KKFRNATDT-----FMQMKDYGFLPTVESCNAYMS 211

Query: 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197
            L  +G++  A   + E  +  +     + N +++G+C++  LD+G  L   ME  G R 
Sbjct: 212 SLLGQGRVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRA 271

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
              +Y+ LI G C++  L  A  L + M + GL PN V F TLI G C+      A  ++
Sbjct: 272 THVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCR------AVKLQ 325

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA K+  EM    L P+ +TY  L++G+ ++GD E A    ++M+  GI+ D + +  LI
Sbjct: 326 EASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLI 385

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G C+  K  +A + ++E+ K  L P+ +T++ +I   C   +   GF L K M   G  
Sbjct: 386 LGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCH 445

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
           P  +T+N L++  CK+     A  +L  M+   +  D  T + +  G    G  +   +L
Sbjct: 446 PNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLVKEL 505

Query: 438 QSE 440
             E
Sbjct: 506 LQE 508



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 277 TYTILLDGFCKEGDLESALDI-RKEMIKRGIELDNVAFTALI-----------------S 318
           T+ I+L    K    +SA  I R  ++  G++L    F AL+                  
Sbjct: 117 THAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFK 176

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            F    K   A     +M   G  P   +    +      G      R  +EMR     P
Sbjct: 177 TFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISP 236

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              T N +M+G C+ G+L     LL  M  LG     ++YN L+ GHC+ G      KL+
Sbjct: 237 NTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLK 296

Query: 439 S---EKGLVSDYACYTSLV 454
           +   + GL  +   + +L+
Sbjct: 297 NMMGKNGLQPNVVTFNTLI 315


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 160/303 (52%), Gaps = 6/303 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V   N LM  LCK GKIK+A+ VFD    +G +    S+  ++NG+     L +   L
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
             +M G G+ P + T++ LI        LD A ++ +EM + G+ P+ V + T+I   C+
Sbjct: 384 FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G++D      +A +  ++M   G+ PDK  Y  L+ GFC  G L  A ++  E++  G+
Sbjct: 444 IGKMD------DAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
            LD V F ++I+  C+ G+V++A+ +    + VGL PD   Y M++D +C  G  +   R
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 557

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +   M S G  P V  Y  L+NG CK G++     L   ML  G+ P  I YNI+++G  
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 617

Query: 427 KHG 429
           + G
Sbjct: 618 EAG 620



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT--AVSFNTLINGHCKAKN 179
           + G  P V+ +N+L+  LC +GK   A  +     + G   +   V++NT+I+G  K  +
Sbjct: 177 ELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGD 236

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +++   L   M   G+ PD+ TYS++++ LCK   +D AE  L +M  +G+ P++  +  
Sbjct: 237 VNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNN 296

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G+   G+       KEA ++  EM    + PD +    L+   CK G ++ A D+  
Sbjct: 297 LIYGYSSTGQ------WKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFD 350

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M  +G   D  ++T +++G+   G +V+   +   ML  G+ P   T+ ++I  +   G
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCG 410

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
                  +  EMR  G  P V TY  ++  LC+ G++ +A    + M+D GVVPD   Y+
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYH 470

Query: 420 ILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
            L++G C HG+     +L SE    G+  D   + S+++   K
Sbjct: 471 CLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCK 513



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 178/373 (47%), Gaps = 46/373 (12%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +N ++    KEG +  A  +F E  +RG+    V+++++++  CKA+ +D+   
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G+ PD +TY+ LI G     +  +A  +  EM  + + P+ V   TL+   C
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG---------------- 289
           K G+I      KEAR + D M   G NPD  +YTI+L+G+  +G                
Sbjct: 338 KYGKI------KEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG 391

Query: 290 -------------------DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                               L+ A+ I  EM   G++   V +  +I+  CR GK+ +A 
Sbjct: 392 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM 451

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
               +M+  G+ PD   Y  +I  FC +G       L+ E+ ++G    +  + +++N L
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNL 511

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSD 446
           CK G++ +A  + D  +++G+ PD + YN+L++G+C  G  E     FD + S  G+  +
Sbjct: 512 CKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS-AGIEPN 570

Query: 447 YACYTSLVSKSSK 459
              Y +LV+   K
Sbjct: 571 VVGYGTLVNGYCK 583



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 212/433 (48%), Gaps = 25/433 (5%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           A +T++  L  +    +ARD+   +  K   G +  +F+  +   G    G ++D   + 
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMK---GQNPDVFSYTIMLNGYATKGCLVDMTDLF 384

Query: 69  YVDLG-FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            + LG  +   I  F +L K Y       C  L   M+  N          E+ D+G  P
Sbjct: 385 DLMLGDGIAPVICTFNVLIKAY-----ANCGMLDKAMIIFN----------EMRDHGVKP 429

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            V  +  ++  LC+ GK+ DA   F++   +G+     +++ LI G C   +L +   L 
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELI 489

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S +  +GMR D+  + ++IN LCK  R+ DA+ +       GL P+ V++  L+DG+C  
Sbjct: 490 SEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC-- 547

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
               + G M++A ++ D M + G+ P+ + Y  L++G+CK G ++  L + +EM+++GI+
Sbjct: 548 ----LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 603

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
              + +  +I G    G+ V A+    EM + G+  +  TY++V+    KN        L
Sbjct: 604 PSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFL 663

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            KE+R+      + T N ++ G+ +  +++ A  L  ++   G+VP  +TY+I++    K
Sbjct: 664 FKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIK 723

Query: 428 HGNPEDFDKLQSE 440
            G  E+ + + S 
Sbjct: 724 EGLVEEAEDMFSS 736



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 141/275 (51%), Gaps = 5/275 (1%)

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           G R L  T+ ++  L++   +A   +        +  +G+R D    S L+ G C+  R 
Sbjct: 105 GPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRT 164

Query: 216 DDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
           D+A ++LLH   E G  P+   +  L+   C  G+   A D+         +C+    PD
Sbjct: 165 DEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCS----PD 220

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
            + Y  ++DGF KEGD+  A D+ KEM++RGI  D V +++++   C+   + +AE  LR
Sbjct: 221 VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLR 280

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           +M+  G+ PD+ TY  +I  +   G  K   R+ KEMR    LP V   N LM  LCK+G
Sbjct: 281 QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYG 340

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           ++K A  + DTM   G  PD  +Y I+L G+   G
Sbjct: 341 KIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKG 375



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 162/335 (48%), Gaps = 9/335 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P +  FNVL+      G +  A ++F+E    G+    V++ T+I   C+   +D+ 
Sbjct: 391 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDA 450

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
               + M   G+ PD Y Y  LI G C    L  A+ L+ E+   G+  + V F ++I+ 
Sbjct: 451 MEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINN 510

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CK GR+       +A+ I D     GL+PD + Y +L+DG+C  G +E AL +   M+ 
Sbjct: 511 LCKLGRV------MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS 564

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GIE + V +  L++G+C+ G++ E   + REML+ G+KP    Y ++ID   + G T  
Sbjct: 565 AGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVP 624

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                 EM   G      TY+ ++ GL K+     A  L   +  + V  D IT N ++ 
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 684

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
           G  +    E+   L    S  GLV     Y+ +++
Sbjct: 685 GMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMIT 719



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 148/307 (48%), Gaps = 9/307 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP+ Y + +LM    +  + + A   F +  + GL   A+  + L+ G C+AK  DE   
Sbjct: 110 SPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALD 169

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLID 242
            L       G  PDV++Y+ L+  LC + +   A+ LL  M E G   +P+ V + T+ID
Sbjct: 170 ILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVID 229

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G  K G ++ A D+        EM   G+ PD +TY+ ++   CK   ++ A    ++M+
Sbjct: 230 GFFKEGDVNKACDL------FKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMV 283

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
            +G+  DN  +  LI G+   G+  EA R+ +EM +  + PD      ++   CK G  K
Sbjct: 284 NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK 343

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               +   M   G  P V +Y  ++NG    G L +   L D ML  G+ P   T+N+L+
Sbjct: 344 EARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLI 403

Query: 423 EGHCKHG 429
           + +   G
Sbjct: 404 KAYANCG 410



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           EI++ G    +  F  +++ LCK G++ DAQ +FD     GLH  AV +N L++G+C   
Sbjct: 491 EIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 550

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++  R+   M  +G+ P+V  Y  L+NG CK  R+D+   L  EM ++G+ P+ +++ 
Sbjct: 551 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 610

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +IDG  + GR         A+    EM  +G+  +K TY+I+L G  K    + A+ + 
Sbjct: 611 IIIDGLFEAGRT------VPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLF 664

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           KE+    +++D +    +I+G  +  +V EA+ +   + + GL P   TY+++I    K 
Sbjct: 665 KELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKE 724

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           G  +    +   M++ G  P     N ++  L K  ++  A   L  +
Sbjct: 725 GLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 772



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 29/277 (10%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           ++ G  P   V+N+LM   C  GK++ A  VFD     G+    V + TL+NG+CK   +
Sbjct: 528 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI 587

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           DEG  L   M   G++P    Y+ +I+GL +  R   A++  HEM E G+  N   ++ +
Sbjct: 588 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIV 647

Query: 241 IDGHCKNGRID------------------------MAG-----DMKEARKIVDEMCTNGL 271
           + G  KN   D                        +AG      ++EA+ +   +  +GL
Sbjct: 648 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 707

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P  +TY+I++    KEG +E A D+   M   G E D+     ++    +  ++V A  
Sbjct: 708 VPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGA 767

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
            L ++ +     +  T  +++D F   G  +   R L
Sbjct: 768 YLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 804



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 20/188 (10%)

Query: 287 KEGDL--ESALDIRKEMIKRG---IELDNVAFTALI-----SGFCRGGKVVEAERMLREM 336
           +EG L  E A D+  E+ +RG   ++ D   F A +     S  C  G  +      R  
Sbjct: 41  REGTLRPEEAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAA 100

Query: 337 LKVG----LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
            +      L P   TY +++DC  +    +       ++   G        + L+ G C+
Sbjct: 101 SRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCE 160

Query: 393 HGQLKNA-NMLLDTMLDLGVVPDDITYNILLEGHC---KHGNPEDFDKLQSEKGLV--SD 446
             +   A ++LL    +LG VPD  +YNILL+  C   K G  +D  ++ +E G V   D
Sbjct: 161 AKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPD 220

Query: 447 YACYTSLV 454
              Y +++
Sbjct: 221 VVAYNTVI 228


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 176/345 (51%), Gaps = 6/345 (1%)

Query: 96  GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
            C  LI+   +  L       + +IL  GY+P+   F  L+  LC +G+I  A    D+ 
Sbjct: 124 NCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKL 183

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
              G     +S+ TLI+G CK         L   ++G  ++P+V  YS +I+G+CK+  +
Sbjct: 184 VALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHV 243

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           +DA  L  EM  +G++PN V ++ LI G    G+      +K+A  + ++M +  + PD 
Sbjct: 244 NDAFDLYSEMVSKGISPNVVTYSALISGFFTVGK------LKDAVDLFNKMISENIKPDV 297

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            T+ IL+D FCK G +  AL +  EM  RG   + V +++++   C+  +V +A  +L +
Sbjct: 298 YTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTK 357

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           +   G++P+  TYT++ID  C +G  +    + +++   G+   V TY  +  G CK G 
Sbjct: 358 LKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGL 417

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
              A+ LL  M + G +PD  TY ++     K G  +  +KL  E
Sbjct: 418 FDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKLHRE 462



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 187/379 (49%), Gaps = 9/379 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA+  F  L +     PA     ++  ++++      L    ++   G  P++   N+
Sbjct: 68  VDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNI 127

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L++  C+ G I  A  VF +  K G +   ++F TLI G C    + +       +   G
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALG 187

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254
            + +  +Y  LI+GLCK      A  LL  +  + + PN V+++T+IDG CK+  ++ A 
Sbjct: 188 FQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAF 247

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
           D+        EM + G++P+ +TY+ L+ GF   G L+ A+D+  +MI   I+ D   F 
Sbjct: 248 DL------YSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFN 301

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            L+  FC+ GK+  A +++ EM   G  P+  TY+ ++D  CK         LL +++  
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQ 361

Query: 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434
           G  P + TY  L++GLC  G+L++A  + + +L  G     +TY ++  G CK G  ++ 
Sbjct: 362 GIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEA 421

Query: 435 DKLQS---EKGLVSDYACY 450
             L S   E G + D   Y
Sbjct: 422 SALLSKMEENGCIPDAKTY 440



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 64/319 (20%)

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL-------- 230
           ++D+   L + +      P    ++ ++  L K         L  +M  RG+        
Sbjct: 67  DVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCN 126

Query: 231 ---------------------------TPNDVIFTTLIDGHCKNGRIDMAGDMKEAR--- 260
                                       PN + FTTLI G C  G+I  A +  +     
Sbjct: 127 ILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVAL 186

Query: 261 ----------KIVDEMCTNG----------------LNPDKITYTILLDGFCKEGDLESA 294
                      ++D +C  G                + P+ + Y+ ++DG CK+  +  A
Sbjct: 187 GFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDA 246

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
            D+  EM+ +GI  + V ++ALISGF   GK+ +A  +  +M+   +KPD  T+ +++D 
Sbjct: 247 FDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDV 306

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           FCK+G      +L+ EM   G  P + TY+++++ LCK  ++  A  LL  + D G+ P+
Sbjct: 307 FCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPN 366

Query: 415 DITYNILLEGHCKHGNPED 433
             TY IL++G C  G  ED
Sbjct: 367 MHTYTILIDGLCTSGKLED 385



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 3/205 (1%)

Query: 254 GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313
            D+ +A  + + +      P  I +  +L    K     + L + K+M  RGI+ + V  
Sbjct: 66  NDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNC 125

Query: 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373
             LI+ FC+ G +  A  +  ++LK+G  P+  T+T +I   C  G          ++ +
Sbjct: 126 NILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVA 185

Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
            G      +Y  L++GLCK G+ + A  LL  +    V P+ + Y+ +++G CK  +  D
Sbjct: 186 LGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVND 245

Query: 434 FDKLQSE---KGLVSDYACYTSLVS 455
              L SE   KG+  +   Y++L+S
Sbjct: 246 AFDLYSEMVSKGISPNVVTYSALIS 270



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%)

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           I Y+     F    D++ A+ +   ++++      + F  ++    +         + ++
Sbjct: 53  IPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKK 112

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   G+KP+     ++I+CFC+ G     F +  ++   G+ P   T+  L+ GLC  GQ
Sbjct: 113 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQ 172

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +  A    D ++ LG   + I+Y  L++G CK G
Sbjct: 173 IHQALNFHDKLVALGFQFNQISYGTLIDGLCKVG 206



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 55/124 (44%)

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +++ + +++  + F     V +A  +   +L+    P    +  ++    K+    T   
Sbjct: 49  KINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLY 108

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L K+M   G  P +   N L+N  C+ G +  A  +   +L +G  P+ IT+  L++G C
Sbjct: 109 LSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLC 168

Query: 427 KHGN 430
             G 
Sbjct: 169 LKGQ 172


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 193/402 (48%), Gaps = 7/402 (1%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPGLVLDA 64
           +L  ++ ++H L  ++    A  +L  ++   G+   A +F ++L + R       V D+
Sbjct: 114 SLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDS 173

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L   +  L    +A   F  ++ + F      C   +  ++      + L FY E+    
Sbjct: 174 LFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCK 233

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
            SP+ Y  N++M   C+ GK+     +  +  + G  AT VS+NTLI GHC+   L    
Sbjct: 234 ISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSAL 293

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +LK++M  SG++P+V T++ LI+G C+  +L +A  +  EM    + PN V + TLI+G+
Sbjct: 294 KLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGY 353

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            +       GD + A +  ++M  NG+  D +TY  L+ G CK+     A    KE+ K 
Sbjct: 354 SQQ------GDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKE 407

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
            +  ++  F+ALI G C          + + M++ G  P++ T+ M++  FC+N D    
Sbjct: 408 NLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGA 467

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            ++L+EM          T + + NGL   G+ +    LL  M
Sbjct: 468 SQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEM 509



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 203/424 (47%), Gaps = 29/424 (6%)

Query: 19  AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDA 78
           +H + + A  +LH +   +   S+ S+   +L   G  LP  V DAL+  Y +    D  
Sbjct: 112 SHSLETHA-IVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYREC---DST 167

Query: 79  IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
            + F  L K +  +          +  R    T     ++++ DYG+ P+V   N  M  
Sbjct: 168 PRVFDSLFKTFAHL----------KKFRNATDT-----FMQMKDYGFLPTVESCNAYMSS 212

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198
           L  +G++  A   + E  +  +     + N +++G+C++  LD+G  L   ME  G R  
Sbjct: 213 LLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRAT 272

Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258
             +Y+ LI G C++  L  A  L + M + GL PN V F TLI G C+      A  ++E
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCR------AMKLQE 326

Query: 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318
           A K+  EM    + P+ +TY  L++G+ ++GD E A    ++M+  GI+ D + + ALI 
Sbjct: 327 ASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIF 386

Query: 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI--DCFCKNGDTKTGFRLLKEMRSDGH 376
           G C+  K  +A + ++E+ K  L P+ +T++ +I   C  KN D   GF L K M   G 
Sbjct: 387 GLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNAD--RGFELYKSMIRSGC 444

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
            P  +T+N L++  C++     A+ +L  M+   +  D  T + +  G    G  +   K
Sbjct: 445 HPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKK 504

Query: 437 LQSE 440
           L  E
Sbjct: 505 LLQE 508



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 3/182 (1%)

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           L   F       +A D   +M   G      +  A +S     G+V  A R  REM +  
Sbjct: 174 LFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCK 233

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           + P+  T  MV+  +C++G    G  LL++M   G      +YN L+ G C+ G L +A 
Sbjct: 234 ISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSAL 293

Query: 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVS---DYACYTSLVSKS 457
            L + M   G+ P+ +T+N L+ G C+    ++  K+  E   V+   +   Y +L++  
Sbjct: 294 KLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGY 353

Query: 458 SK 459
           S+
Sbjct: 354 SQ 355



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 21/199 (10%)

Query: 277 TYTILLDGFCKEGDLESALDI-RKEMIKRGIELDNVAFTALISG---------------- 319
           T+ I+L    K    +SA  I R  ++  G++L    F AL+                  
Sbjct: 117 THAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFK 176

Query: 320 -FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
            F    K   A     +M   G  P   +    +      G      R  +EMR     P
Sbjct: 177 TFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISP 236

Query: 379 AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
              T N +M+G C+ G+L     LL  M  LG    D++YN L+ GHC+ G      KL+
Sbjct: 237 NPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLK 296

Query: 439 S---EKGLVSDYACYTSLV 454
           +   + GL  +   + +L+
Sbjct: 297 NMMGKSGLQPNVVTFNTLI 315


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 180/389 (46%), Gaps = 26/389 (6%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           V  GF  D + C +L+ K +F   +R     + + MR           +EIL+    P V
Sbjct: 89  VSKGFKPDVVLCTKLI-KGFFN--SRN----LKKAMRV----------MEILETYGDPDV 131

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           Y +N ++    K  +I  A  VFD    RG     V++N +I   C    L+  F +   
Sbjct: 132 YSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDE 191

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +   G +P V TY+ LI     E R+++A  L  E+  RGL P+   +  +I G CK G 
Sbjct: 192 LLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGM 251

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
            D A D       V  +   G NPD ++Y ILL  F  +   E    + K+M+  G E +
Sbjct: 252 EDRALDF------VRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPN 305

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V  + LIS FCR G+V EA  +L  M + GL PD  +Y  +I  FCK G        L+
Sbjct: 306 VVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLE 365

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M SDG LP +  YN ++  LCK G    A  + + + ++G  P    YN +       G
Sbjct: 366 KMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCG 425

Query: 430 NPEDFDKLQSE---KGLVSDYACYTSLVS 455
           N     ++ SE   KG+  D   Y SL+S
Sbjct: 426 NKIKALEMISEMIRKGIDPDEITYNSLIS 454



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 164/317 (51%), Gaps = 6/317 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  + E++  G  P +Y +N ++  +CKEG    A         RG +   VS+N L+ 
Sbjct: 220 ALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLR 279

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
                   ++G RL   M  SG  P+V T+S LI+  C+E R+ +A  +L  M E+GLTP
Sbjct: 280 SFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTP 339

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           +   +  LI   CK GR+D+A +  E      +M ++G  PD + Y  +L   CK G  +
Sbjct: 340 DSYSYDPLISAFCKEGRLDLAIEYLE------KMVSDGCLPDIVNYNTILATLCKFGCAD 393

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            ALD+ +++ + G      A+  + S     G  ++A  M+ EM++ G+ PD+ TY  +I
Sbjct: 394 LALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLI 453

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            C C++G       LL +M +    P V ++N ++ G+CK  ++     LL TM++ G +
Sbjct: 454 SCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCL 513

Query: 413 PDDITYNILLEGHCKHG 429
           P++ +Y +L+EG    G
Sbjct: 514 PNETSYVLLIEGIAYAG 530



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 162/324 (50%), Gaps = 30/324 (9%)

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+++ C+ GK  ++    +    +G     V    LI G   ++NL +  R+  ++E  G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA- 253
             PDVY+Y+A+I+G  K N++D A  +   M  RG +P+ V +  +I   C  G++++A 
Sbjct: 128 -DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAF 186

Query: 254 ----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
                                       G + EA ++ DE+ + GL PD  TY  ++ G 
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CKEG  + ALD  + +  RG   D V++  L+  F    +  + ER++++M+  G +P+ 
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            T++++I  FC+ G  +    +L+ M+  G  P   +Y+ L++  CK G+L  A   L+ 
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366

Query: 406 MLDLGVVPDDITYNILLEGHCKHG 429
           M+  G +PD + YN +L   CK G
Sbjct: 367 MVSDGCLPDIVNYNTILATLCKFG 390


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 165/315 (52%), Gaps = 11/315 (3%)

Query: 119 EILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           EI  Y    G+ P +  +++L+H    EG+  D   +F     +G+ +     N LI+ H
Sbjct: 358 EIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAH 417

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            K   +DE   + + M+G G+RP+V TYS LI+  C+  RL DA     +M   G+ PN 
Sbjct: 418 AKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNT 477

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLES 293
            ++ +LI G C      M GD+ +A++ + EM + GL+ P+ + ++ ++   C EG +  
Sbjct: 478 AVYHSLIHGFC------MHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMD 531

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A D+   +I  G     V F +LI G+C  GK+ +A  +L  M+ VG++PD  T   ++ 
Sbjct: 532 AQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVS 591

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
            +CK+G    G  L +EM      P   TYN +++GL + G+   A  +   M+D G   
Sbjct: 592 GYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAV 651

Query: 414 DDITYNILLEGHCKH 428
           D  TY ILL+G C++
Sbjct: 652 DIDTYKILLKGLCRN 666



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 160/322 (49%), Gaps = 11/322 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT--AVSFNTLINGHCKAKNLDEGF 184
           P    +N ++  LC + + ++A  +     K G   +   VSFNT+I+G  K   + +  
Sbjct: 193 PDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC 252

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
            L + M   G+ PDV TY+++++ LCK   +D AE +L +M ++G+ P+ V +  +I G+
Sbjct: 253 NLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGY 312

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
                   +G  KE+ K+  +M + GL PD +T++  +   CK G  + A +I + M  +
Sbjct: 313 ------SCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTK 366

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G   D V+++ L+ G+   G+  +   +   M   G+  +     ++I    K G     
Sbjct: 367 GHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEA 426

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +  EM+  G  P V TY+ L++  C+ G+L +A      M+ +G+ P+   Y+ L+ G
Sbjct: 427 MLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHG 486

Query: 425 HCKHGN---PEDFDKLQSEKGL 443
            C HG+    ++F      KGL
Sbjct: 487 FCMHGDLVKAKEFISEMMSKGL 508



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 7/309 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  FN ++H   K+G++  A  +F+E  ++G+     ++N++++  CKA+ +D+   
Sbjct: 229 SPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEF 288

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           +   M   G+ PD  TY+A+I+G        ++  +  +M  +GL P+ V F++ +   C
Sbjct: 289 VLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLC 348

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           K+GR       K+A +I   M T G  PD ++Y+ILL G+  EG      ++   M  +G
Sbjct: 349 KHGR------SKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKG 402

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I  +      LIS   + G + EA  +  EM   G++P+  TY+ +I  FC+ G      
Sbjct: 403 IVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAM 462

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV-VPDDITYNILLEG 424
               +M S G  P    Y++L++G C HG L  A   +  M+  G+  P+ + ++ ++  
Sbjct: 463 EKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHS 522

Query: 425 HCKHGNPED 433
            C  G   D
Sbjct: 523 LCIEGRVMD 531



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 173/366 (47%), Gaps = 19/366 (5%)

Query: 102 DRMMRTNLPTVTLGFYLEILDYGYSP-----SVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           D +  +N P + L  +  I      P     +V  + +LM   C+  +            
Sbjct: 92  DSVSCSNGPALVLALFNRICREEAGPRVAPLTVRTYGILMDCCCRARRPDLGPAFVARLL 151

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFR-LKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           + GL    +   T +   C AK  DE    L   M      PD  +Y+ +I  LC ++R 
Sbjct: 152 RAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRS 211

Query: 216 DDAELLLHEMCERG--LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273
            +A  ++  M + G   +P+ V F T+I G  K G +  A ++       +EM   G+ P
Sbjct: 212 QEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNL------FNEMVQKGVVP 265

Query: 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
           D  TY  ++D  CK   ++ A  + ++M+ +G+E D V + A+I G+   G   E+ +M 
Sbjct: 266 DVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMF 325

Query: 334 REMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393
           R+M   GL PD  T++  +   CK+G +K    + + M + GH+P + +Y+ L++G    
Sbjct: 326 RKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATE 385

Query: 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYAC 449
           G+  + N L  +M D G+V +    NIL+  H K G  ++    F ++Q + G+  +   
Sbjct: 386 GRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQ-GVRPNVVT 444

Query: 450 YTSLVS 455
           Y++L+S
Sbjct: 445 YSTLIS 450



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 183/409 (44%), Gaps = 18/409 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKM-HSQARD-------LLHLIVS---KKGMGSSASLFASILE 51
           + + LH Y+T   F   + + HS A          +++++S   K+GM   A L  + ++
Sbjct: 375 YSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQ 434

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111
            +G     +    L+  +  +G L DA++ F  +              LI          
Sbjct: 435 GQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLV 494

Query: 112 VTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
               F  E++  G + P++  F+ ++H LC EG++ DAQ VF+     G   T V+FN+L
Sbjct: 495 KAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSL 554

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I+G+C    +++ F +   M   G+ PDV T + L++G CK  ++DD  +L  EM  + +
Sbjct: 555 IDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKV 614

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P  V +  ++DG  + GR         A+K+  EM  +G   D  TY ILL G C+   
Sbjct: 615 KPTTVTYNIVLDGLLRAGRT------SAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDL 668

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
            + A+ +  ++     + D      +I+   +  +  EA  +   +   GL P+ +TY +
Sbjct: 669 TDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGV 728

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           +I    K G  +    +   M   G  P+    N ++  L + G +  A
Sbjct: 729 MIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 777



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 167/369 (45%), Gaps = 12/369 (3%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
           ++ L+  +   G +D+A+  F  ++    R        LI    R       +  + +++
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH-ATAVSFNTLINGHCKAKNL 180
             G  P+  V++ L+H  C  G +  A+    E   +GLH    V F+++I+  C    +
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRV 529

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
            +   + +++   G RP + T+++LI+G C   +++ A  +L  M   G+ P+ V   TL
Sbjct: 530 MDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTL 589

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           + G+CK+G+ID      +   +  EM    + P  +TY I+LDG  + G   +A  +  E
Sbjct: 590 VSGYCKSGKID------DGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHE 643

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           MI  G  +D   +  L+ G CR     EA  +  ++  +  K D      +I+   K   
Sbjct: 644 MIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRR 703

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-----DD 415
            +    L   + + G +P V TY  ++  L K G ++ A+ +  +M   G  P     +D
Sbjct: 704 REEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLND 763

Query: 416 ITYNILLEG 424
           I   +L +G
Sbjct: 764 IIRMLLQKG 772



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 1/198 (0%)

Query: 58  PGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
           P +V +  ++  Y   G +DD +  FR +     +        ++D ++R    +     
Sbjct: 581 PDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKM 640

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + E++D G +  +  + +L+  LC+     +A  +F + G           NT+IN   K
Sbjct: 641 FHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYK 700

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            +  +E   L + +  SG+ P+V TY  +I  L KE  +++A+ +   M + G  P+  +
Sbjct: 701 VRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRL 760

Query: 237 FTTLIDGHCKNGRIDMAG 254
              +I    + G I  AG
Sbjct: 761 LNDIIRMLLQKGDIVKAG 778



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           R+E   R   L    +  L+   CR  +       +  +L+ GLK      T  + C C 
Sbjct: 112 REEAGPRVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCH 171

Query: 358 NGDTKTGFR-LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG--VVPD 414
              T      LL  M     +P   +YN ++  LC   + + A  ++  M   G    PD
Sbjct: 172 AKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPD 231

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSKYR 461
            +++N ++ G  K G       L +E   KG+V D   Y S+V    K R
Sbjct: 232 VVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKAR 281


>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 913

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 210/439 (47%), Gaps = 18/439 (4%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQAR----DLLHLIVSKKGMGSSASLFASILE------- 51
           F+  +  Y+ ++  L    +H Q R    D++++  +        S F   L        
Sbjct: 95  FKHDISTYAAIIRILCYWGLHKQLRSIFLDIIYVSCNDNDTPFEISHFLDTLSDGFVDVD 154

Query: 52  -TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
             + +     V DAL+  YV +G  DDAI     + +  F      C  L++ +++ +  
Sbjct: 155 SKKQSLFMSKVYDALVKAYVSVGMFDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKL 214

Query: 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170
            + L  Y ++   G SP+ Y + +++  LC  G +++A  V  E  + G+  T  ++   
Sbjct: 215 DMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEESGITPTGFAYTAY 274

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           I G C  +  D G+++    +G+ +  D+Y Y+  + G C E + D AE +L +M + G+
Sbjct: 275 IEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDKAESVLRDMEKEGM 334

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+   +T LI   CK      AG++ +A   ++EM + G+  + +    +L   C+ G 
Sbjct: 335 VPDMHCYTALICRFCK------AGNLLKAYAFLNEMMSKGVKVNCVIVGSILHCLCELGM 388

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
               +D   +    G+ LD V++  ++   C+ GK+ EA  +L EM    +  D   YT 
Sbjct: 389 HSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTT 448

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I+ +C  G+    F++ +EMR +G    V TY+ L++G C++G    A  LLD M    
Sbjct: 449 LINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQK 508

Query: 411 VVPDDITYNILLEGHCKHG 429
           + P+ ITYN+++E  C  G
Sbjct: 509 LKPNSITYNVVVESLCMGG 527



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 172/369 (46%), Gaps = 27/369 (7%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G + DA + F  +R++   I       L+    R  L T  L     +      P+   +
Sbjct: 457 GNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITY 516

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL--KSVM 190
           NV++  LC  GK+K+A+ VF+    + L     ++  +ING+CKA +     +L  +  +
Sbjct: 517 NVVVESLCMGGKVKEAEAVFNSIEDKSLD----NYFAMINGYCKANHTAGAAKLFFRLSV 572

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +G   R   Y    L+  LC+E   D   +LL  M    + P+  I+  L    C+ G  
Sbjct: 573 KGHVKRSCCYN---LLKNLCEEGDNDGILMLLETMLNLNVEPSKFIYGKLFTSLCRAGG- 628

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
             A  M++A+ + D +   G  PD I YTI++  +C+   L+ A+D+  +M +RGI+ D 
Sbjct: 629 --AAGMRKAQSVFDMLLKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDL 686

Query: 311 VAFTALISGF-------------CRGGK--VVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           V FT L+ G               +GG   + +A  +  EM    +KPD   YT++ID +
Sbjct: 687 VTFTVLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGY 746

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK         +  EM   G  P + TY AL++G C+ G +  A  LLD M   G+ PD 
Sbjct: 747 CKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDT 806

Query: 416 ITYNILLEG 424
            T + LL G
Sbjct: 807 RTMSALLHG 815



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 183/430 (42%), Gaps = 89/430 (20%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
           +LG +L+ + Y         N ++  LCK GK+++A  + DE   + ++   + + TLIN
Sbjct: 401 SLGLFLDGVSY---------NNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLIN 451

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G+C   N+ + F++   M  +G+  DV TY  L++G C+     +A  LL  M  + L P
Sbjct: 452 GYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKP 511

Query: 233 NDVIFTT-------------------------------LIDGHCKNG----------RID 251
           N + +                                 +I+G+CK            R+ 
Sbjct: 512 NSITYNVVVESLCMGGKVKEAEAVFNSIEDKSLDNYFAMINGYCKANHTAGAAKLFFRLS 571

Query: 252 MAGDMKEA--RKIVDEMCTNGLN----------------PDKITYTILLDGFCKEGD--- 290
           + G +K +    ++  +C  G N                P K  Y  L    C+ G    
Sbjct: 572 VKGHVKRSCCYNLLKNLCEEGDNDGILMLLETMLNLNVEPSKFIYGKLFTSLCRAGGAAG 631

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A  +   ++KRG   D +A+T +I+ +CR   + EA  +  +M + G+KPD  T+T+
Sbjct: 632 MRKAQSVFDMLLKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTV 691

Query: 351 VIDCFCK---------------NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           ++D   K               N D      +  EM+     P V  Y  L++G CK   
Sbjct: 692 LLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDS 751

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTS 452
           L +A  + D M++ G+ PD ITY  LL G C+ G+ +    L    S KG+  D    ++
Sbjct: 752 LHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSA 811

Query: 453 LVSKSSKYRQ 462
           L+    K RQ
Sbjct: 812 LLHGILKTRQ 821



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 172/417 (41%), Gaps = 77/417 (18%)

Query: 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF--------------- 152
           N P   L F+ ++ D G+   +  +  ++  LC  G  K  + +F               
Sbjct: 78  NQPISALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSIFLDIIYVSCNDNDTPF 137

Query: 153 ----------DEF-----GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197
                     D F      K+ L  + V ++ L+  +      D+   +   M      P
Sbjct: 138 EISHFLDTLSDGFVDVDSKKQSLFMSKV-YDALVKAYVSVGMFDDAIDVLFQMGRRRFVP 196

Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
            ++  + L+N L K ++LD A  +  ++   GL+PND  +  +I   C NG ++      
Sbjct: 197 HIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLE------ 250

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           EA  ++ EM  +G+ P    YT  ++G C     +    + +      I LD  A+T  +
Sbjct: 251 EAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAV 310

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG-- 375
            GFC   K  +AE +LR+M K G+ PD   YT +I  FCK G+    +  L EM S G  
Sbjct: 311 RGFCNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVK 370

Query: 376 ------------------HLPAVE---------------TYNALMNGLCKHGQLKNANML 402
                             H   V+               +YN +++ LCK G+L+ A  L
Sbjct: 371 VNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITL 430

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
           LD M    +  D + Y  L+ G+C  GN  D    F++++ E G+  D   Y  LVS
Sbjct: 431 LDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMR-ENGIEIDVVTYDVLVS 486



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 18/200 (9%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIV-YVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           GM  + S+F  +L+   T  P L+   +MI  Y  +  L +A+  F  +++   +     
Sbjct: 631 GMRKAQSVFDMLLKRGWT--PDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVT 688

Query: 97  CRCLIDRMMRTNLPTV---------------TLGFYLEILDYGYSPSVYVFNVLMHKLCK 141
              L+D   + ++  V                L  + E+ D    P V  + VL+   CK
Sbjct: 689 FTVLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCK 748

Query: 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201
              + DA  VFDE  +RGL    +++  L++G C+  ++D    L   M   G+ PD  T
Sbjct: 749 VDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRT 808

Query: 202 YSALINGLCKENRLDDAELL 221
            SAL++G+ K  +    + L
Sbjct: 809 MSALLHGILKTRQCSAPQCL 828


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 222/460 (48%), Gaps = 13/460 (2%)

Query: 1   PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
           P F   +  +  M+H      + S  + LL  I+  K   +  SL  S L+++GT  P L
Sbjct: 34  PTFDDAVSTFHRMLHLHPPPSIVSLNK-LLSSIMKTKHYPTVVSL-CSHLDSKGTPKPSL 91

Query: 61  VLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
           V  ++ I     LG +  A      + K  F +       L+  +         L  Y  
Sbjct: 92  VTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDH 151

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
            +  G+S     +  L++ LCK GK +DA  +  +  K G+    + +N +++G CK   
Sbjct: 152 AVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGL 211

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLTPNDVIFT 238
           + E   L S M G G+  DV+TY++LI+G C   +   A  LL+EM  +  + P+   F 
Sbjct: 212 VTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFN 271

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  CK G +       EAR +   M   GL PD ++   L++G+C  G +  A ++ 
Sbjct: 272 ILVDALCKLGMV------AEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVF 325

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M++RG   + ++++ LI+G+C+   V EA R+L EM +  L PD  TY  ++D   K+
Sbjct: 326 DRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKS 385

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G     + L++ MR+ G  P + TYN L++   K   L  A  L   ++D G+ P+  TY
Sbjct: 386 GRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTY 445

Query: 419 NILLEGHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVS 455
           NIL++G CK G     ++  +L S KG   +   Y  +++
Sbjct: 446 NILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMIN 485



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P++ ++N+++  LCKEG + +A  +  E   +G+     ++N+LI+G C A      
Sbjct: 191 GVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGA 250

Query: 184 FRL-KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            RL   ++    +RPDVYT++ L++ LCK   + +A  +   M +RGL P+ V    L++
Sbjct: 251 VRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMN 310

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
           G C      + G M EA+++ D M   G  P+ I+Y+ L++G+CK   ++ AL +  EM 
Sbjct: 311 GWC------LRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMH 364

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +R +  D V +  L+ G  + G+V+    ++  M   G  PD  TY +++D + K     
Sbjct: 365 QRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLD 424

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               L + +   G  P + TYN L++GLCK G++K A  +   +   G  P+  TYNI++
Sbjct: 425 KALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMI 484

Query: 423 EGHCKHG 429
            G  + G
Sbjct: 485 NGLRREG 491



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 174/354 (49%), Gaps = 7/354 (1%)

Query: 72  LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131
           +G   DAI+  R + K   R        ++D + +  L T   G   E++  G    V+ 
Sbjct: 174 MGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFT 233

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFG-KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           +N L+H  C  G+ + A  + +E   K  +     +FN L++  CK   + E   +  +M
Sbjct: 234 YNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLM 293

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
              G+ PDV + +AL+NG C    + +A+ +   M ERG  PN + ++TLI+G+CK   +
Sbjct: 294 IKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMV 353

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           D      EA +++ EM    L PD +TY  LLDG  K G +    D+ + M   G   D 
Sbjct: 354 D------EALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDL 407

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           + +  L+  + +   + +A  + + ++  G+ P+  TY ++ID  CK G  K    + + 
Sbjct: 408 ITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQL 467

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +   G  P + TYN ++NGL + G L  A  LL  M+D G  P+ +T++ L+  
Sbjct: 468 LSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRA 521



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 140/264 (53%), Gaps = 6/264 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P VY FN+L+  LCK G + +A+ VF    KRGL    VS N L+NG C    + E   +
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M   G  P+V +YS LING CK   +D+A  LL EM +R L P+ V +  L+DG  K
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSK 384

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +GR+    D+ EA      M  +G  PD ITY +LLD + K   L+ AL + + ++  GI
Sbjct: 385 SGRVLYEWDLVEA------MRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGI 438

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             +   +  LI G C+GG++  A+ + + +   G +P+  TY ++I+   + G       
Sbjct: 439 SPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEA 498

Query: 367 LLKEMRSDGHLPAVETYNALMNGL 390
           LL EM  DG  P   T++ L+  L
Sbjct: 499 LLLEMVDDGFPPNAVTFDPLVRAL 522



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D  ++       L  +  I+D G SP++  +N+L+  LCK G++K A+ +F     +G
Sbjct: 413 LLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKG 472

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
                 ++N +ING  +   LDE   L   M   G  P+  T+  L+  L
Sbjct: 473 CRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRAL 522


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 216/422 (51%), Gaps = 30/422 (7%)

Query: 56  HLP-GLVLDALMIVYVDLGFLDDAIQCFRLLRK------HYFRIPARGCRCLIDRMMRTN 108
           H+P     + L+ + +   + D A   F  L+       + F I  +GC C     ++  
Sbjct: 120 HVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGC-CEAGYFVK-- 176

Query: 109 LPTVTLGFYLEIL--DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
                 GF L  +  ++G SP+V ++  L+   CK+G +  A+ +F +  + GL     +
Sbjct: 177 ------GFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHT 230

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           ++ L+NG  K     EGF++   M+ SG+ P+ Y Y+ LI+  C +  +D A  +  EM 
Sbjct: 231 YSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMR 290

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
           E+G+    + +  LI G C+  +        EA K+V ++   GL+P+ +TY IL++GFC
Sbjct: 291 EKGIACGVMTYNILIGGLCRGKKFG------EAVKLVHKVNKVGLSPNIVTYNILINGFC 344

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
               ++SA+ +  ++   G+    V +  LI+G+ +   +  A  +++EM +  + P   
Sbjct: 345 DVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKV 404

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           TYT++ID F +   T+    +   M   G +P V TY+ L++GLC HG +K A+ L  ++
Sbjct: 405 TYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSL 464

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS---LVSKSSKY 460
            ++ + P+ + YN ++ G+CK G+     +L +E    G+V + A + S   L+ +  K+
Sbjct: 465 GEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKW 524

Query: 461 RQ 462
           ++
Sbjct: 525 KE 526



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 156/298 (52%), Gaps = 6/298 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y +N L+ + C +G +  A  VF E  ++G+    +++N LI G C+ K   E 
Sbjct: 258 GIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEA 317

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   +   G+ P++ TY+ LING C   ++D A  L +++   GL+P  V + TLI G
Sbjct: 318 VKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAG 377

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K        ++  A  +V EM    + P K+TYTIL+D F +    E A ++   M K
Sbjct: 378 YSK------VENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEK 431

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D   ++ L+ G C  G + EA ++ + + ++ L+P+   Y  +I  +CK G +  
Sbjct: 432 SGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYR 491

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
             RLL EM   G +P V ++ + +  LC+  + K A +LL  M++ G+ P    Y ++
Sbjct: 492 ALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 174/345 (50%), Gaps = 10/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F   ++  G+ P    FN L+  L +      A  +F+E  K  +   A SF  +I 
Sbjct: 108 ALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNEL-KSKVVLDAYSFGIMIK 166

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+A    +GFRL +++E  G+ P+V  Y+ LI+G CK+  +  A+ L  +M   GL P
Sbjct: 167 GCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVP 226

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   ++ L++G  K G        +E  ++ + M  +G+ P+   Y  L+  +C +G ++
Sbjct: 227 NPHTYSVLMNGFFKQGL------QREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVD 280

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM ++GI    + +  LI G CRG K  EA +++ ++ KVGL P+  TY ++I
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + FC      +  RL  +++S G  P + TYN L+ G  K   L  A  L+  M +  + 
Sbjct: 341 NGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIA 400

Query: 413 PDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           P  +TY IL++   +  + E   +   L  + GLV D   Y+ L+
Sbjct: 401 PSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLL 445



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 155/321 (48%), Gaps = 6/321 (1%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
             LM  +   G   +  Q +  +++      A    CLI       +       + E+ +
Sbjct: 232 SVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMRE 291

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +  V  +N+L+  LC+  K  +A  +  +  K GL    V++N LING C  + +D 
Sbjct: 292 KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDS 351

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL + ++ SG+ P + TY+ LI G  K   L  A  L+ EM ER + P+ V +T LID
Sbjct: 352 AVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILID 411

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              +    + A +M         M  +GL PD  TY++LL G C  G+++ A  + K + 
Sbjct: 412 AFARLNHTEKACEMHSL------MEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLG 465

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +  ++ ++V +  +I G+C+ G    A R+L EM++ G+ P+ A++   I   C++   K
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWK 525

Query: 363 TGFRLLKEMRSDGHLPAVETY 383
               LL +M + G  P+V  Y
Sbjct: 526 EAELLLGQMINSGLKPSVSLY 546



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 142/310 (45%), Gaps = 24/310 (7%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG----FRLKS- 188
           +L+ K+ K    K A ++F+    +GL  T+ S + ++N    +  L +      RL S 
Sbjct: 9   ILIQKMVKVPPTK-ALLLFNTATYQGLQHTSHSISFILNHLLSSGMLPQAQSLILRLISG 67

Query: 189 --------VMEGSGMRP-DVYT--YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
                    +  +   P   YT  Y  ++N     +  D A   LH M   G  P    F
Sbjct: 68  RIPSSLMLQLTQAHFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTF 127

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             L+    ++   D      +A  I +E+  + +  D  ++ I++ G C+ G       +
Sbjct: 128 NNLLCLLIRSNYFD------KAWWIFNEL-KSKVVLDAYSFGIMIKGCCEAGYFVKGFRL 180

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              + + G+  + V +T LI G C+ G V+ A+ +  +M ++GL P+  TY+++++ F K
Sbjct: 181 LAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFK 240

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  + GF++ + M+  G +P    YN L++  C  G +  A  +   M + G+    +T
Sbjct: 241 QGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMT 300

Query: 418 YNILLEGHCK 427
           YNIL+ G C+
Sbjct: 301 YNILIGGLCR 310


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 220/463 (47%), Gaps = 31/463 (6%)

Query: 17  LVAHKMHSQARDLLHLI-VSKKGMGSSASLFASILETRGTHL------PGLVLDALMI-V 68
           L+ H   +  R   HL+ V  +   SS S  A  L  R          P L   +++   
Sbjct: 40  LLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGC 99

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-----DY 123
           +  LG ++     F L+ K  +R+       +I++++        +   ++IL     ++
Sbjct: 100 FCRLGRIEHGFAAFGLILKTGWRVN----EVVINQLLNGLCDAKRVDEAMDILLRRMPEF 155

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHCKAKNL 180
           G  P+V   N L+  LC E ++++A  +     + G        V++NT+I+G CKA+ +
Sbjct: 156 GCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAV 215

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           D    +   M   G++ DV TYS +I+GLCK   +D AE +L  M ++G+ P+ V + T+
Sbjct: 216 DRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTI 275

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           IDG CK   +D       A  ++  M   G+ PD +TY  ++DG CK   ++ A  + + 
Sbjct: 276 IDGLCKAQAVD------RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQH 329

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           MI + ++ D   +  LI G+   G+  E  R L EM   GL PD  TY++++D  CKNG 
Sbjct: 330 MIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGK 389

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                ++   M   G  P V  Y  L++G    G + +   LLD M+  G+ P++  +NI
Sbjct: 390 CTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNI 449

Query: 421 LLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           +L  + K    ++    F ++ S+ GL  D   Y  L+    K
Sbjct: 450 VLCAYAKKAMIDEAMHIFSRM-SQHGLSPDVVTYGILIDALCK 491



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 218/430 (50%), Gaps = 27/430 (6%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           YS ++ +L  +   ++AR + + ++ +KG+  + +++  +L   G    G + D      
Sbjct: 377 YSLLLDYLCKNGKCTEARKIFYCMI-RKGIKPNVTIYGILLH--GYAARGAIAD-----L 428

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127
            DL  LD  +        + F I   A   + +ID  M           +  +  +G SP
Sbjct: 429 TDL--LDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMH---------IFSRMSQHGLSP 477

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
            V  + +L+  LCK G++ DA + F++    G+   +V FN+L+ G C     ++   L 
Sbjct: 478 DVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELF 537

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G+RP+V  ++ ++  LC E ++  A+ L+  M   G+ PN + + TLI GHC  
Sbjct: 538 FEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLA 597

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR D      EA +++D M + GL PD I+Y  LL G+CK G +++A  + +EM+++G+ 
Sbjct: 598 GRTD------EAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVT 651

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
              V ++ ++ G     +  EA+ +   M+K G + D  TY ++++  CK       F++
Sbjct: 652 PGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKI 711

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
            + + S    P + T+  +++ L K G+ K+A  L  ++   G+VP+ +TY I+++   +
Sbjct: 712 FQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQ 771

Query: 428 HGNPEDFDKL 437
            G  ++FD L
Sbjct: 772 EGLLDEFDNL 781



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 178/373 (47%), Gaps = 16/373 (4%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR------TNLPTVTLGFYLEILDYGYSPS 128
           +DDA++ F  L  H      R    L++ + R      + L                 P 
Sbjct: 30  IDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPD 89

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR-LK 187
           +  +++L    C+ G+I+     F    K G     V  N L+NG C AK +DE    L 
Sbjct: 90  LCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILL 149

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG---LTPNDVIFTTLIDGH 244
             M   G  P+V + + L+ GLC E R+++A  LLH M E G    TPN V + T+IDG 
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGL 209

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK   +D       A  ++  M   G+  D +TY+ ++DG CK   ++ A  + + MI +
Sbjct: 210 CKAQAVD------RAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDK 263

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G++ D V +  +I G C+   V  AE +L+ M+  G+KPD  TY  +ID  CK       
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRA 323

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             +L+ M      P ++TYN L++G    G+ K     L+ M   G+ PD +TY++LL+ 
Sbjct: 324 DGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDY 383

Query: 425 HCKHGNPEDFDKL 437
            CK+G   +  K+
Sbjct: 384 LCKNGKCTEARKI 396



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 168/344 (48%), Gaps = 9/344 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G    ++D    P +  +N L+H     G+ K+     +E   RGL    V+++ L++  
Sbjct: 325 GVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYL 384

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK     E  ++   M   G++P+V  Y  L++G      + D   LL  M   G++PN+
Sbjct: 385 CKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNN 444

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
            IF  ++  + K   ID      EA  I   M  +GL+PD +TY IL+D  CK G ++ A
Sbjct: 445 YIFNIVLCAYAKKAMID------EAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDA 498

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           +    +MI  G+  ++V F +L+ G C   +  +AE +  EM   G++P+   +  ++  
Sbjct: 499 VLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCN 558

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
            C  G      RL+  M   G  P V +YN L+ G C  G+   A  LLD M+ +G+ PD
Sbjct: 559 LCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPD 618

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
            I+Y+ LL G+CK G  ++   L  E   KG+      Y++++ 
Sbjct: 619 LISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQ 662



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 175/355 (49%), Gaps = 19/355 (5%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG------LHATAVS 166
            L  + E+L +    SV  FN L++ + +      +++    F +        +     +
Sbjct: 33  ALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCT 92

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEM 225
           ++ L    C+   ++ GF    ++  +G R +    + L+NGLC   R+D+A ++LL  M
Sbjct: 93  YSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRM 152

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG---LNPDKITYTILL 282
            E G  PN V   TL+ G C   R++      EA +++  M  +G     P+ +TY  ++
Sbjct: 153 PEFGCMPNVVSCNTLLKGLCNEKRVE------EALELLHTMAEDGGGNCTPNVVTYNTII 206

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           DG CK   ++ A  + + MI +G++LD V ++ +I G C+   V  AE +L+ M+  G+K
Sbjct: 207 DGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVK 266

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           PD  TY  +ID  CK         +L+ M   G  P V TYN +++GLCK   +  A+ +
Sbjct: 267 PDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGV 326

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           L  M+D  V PD  TYN L+ G+   G  ++  +   E   +GL  D   Y+ L+
Sbjct: 327 LQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLL 381



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 24/372 (6%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLL-------RKHYFRIPARGCRCLIDRMMRTNLPT 111
           G+++DAL      LG +DDA+  F  +           F     G  C +DR  +     
Sbjct: 483 GILIDAL----CKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGL-CTVDRWEKAE--- 534

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
                + E+ D G  P+V  FN +M  LC EG++  AQ + D   + G+    +S+NTLI
Sbjct: 535 ---ELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLI 591

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            GHC A   DE  +L  VM   G++PD+ +Y  L+ G CK  R+D+A  L  EM  +G+T
Sbjct: 592 GGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVT 651

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P  V ++T++ G     R        EA+++   M  +G   D  TY I+L+G CK   +
Sbjct: 652 PGAVTYSTILQGLFHTRR------FSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCV 705

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           + A  I + +  + +  + + FT +I    +GG+  +A  +   +   GL P+  TY ++
Sbjct: 706 DEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIM 765

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           +    + G       L   M   G  P     NA++  L   G++  A   L  + ++  
Sbjct: 766 MKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNF 825

Query: 412 VPDDITYNILLE 423
             +  T ++L+ 
Sbjct: 826 SLEASTTSLLIS 837



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           ++  G  P +  ++ L+   CK G+I +A  +F E  ++G+   AV+++T++ G    + 
Sbjct: 610 MVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRR 669

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             E   L   M  SG + D+YTY+ ++NGLCK N +D+A  +   +C + L PN + FT 
Sbjct: 670 FSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTI 729

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +ID   K GR       K+A  +   + ++GL P+ +TY I++    +EG L+   ++  
Sbjct: 730 MIDVLFKGGR------KKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFL 783

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
            M K G   D+V   A+I      G+++ A   L ++ ++    + +T +++I  F +
Sbjct: 784 AMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSR 841


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 166/322 (51%), Gaps = 9/322 (2%)

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           + KL + G++++     +    RG     +   +LI G CK     +  R+  ++E SG 
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGA 150

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            PDV TY+ LI+G+C   R  DAE LL +M  RG +P+ V F  LI+  C+ G +  A D
Sbjct: 151 VPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAID 210

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
                 ++++M  +G  P+ ++Y  LL GFCKE  +E A++   +M  RG   D V +  
Sbjct: 211 ------VLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNT 264

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++  C+ GKV  A  +L ++   G  P   TY  VID   K G T    +LL EMR+ G
Sbjct: 265 LLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKG 324

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE--- 432
             P + TY++L+ GL + G++  A      +  LGV P+ ITYN ++ G CK    +   
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI 384

Query: 433 DFDKLQSEKGLVSDYACYTSLV 454
           DF     ++G     A YT L+
Sbjct: 385 DFLAYMVQRGCKPTEASYTILI 406



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 21/253 (8%)

Query: 95  RGC-------RCLIDRMMRTNLPTVTLGFYLEILD----YGYSPSVYVFNVLMHKLCKEG 143
           RGC         LI+ + R  L    LG  +++L+    +G +P+   +N L+H  CKE 
Sbjct: 183 RGCSPSVVTFNILINFLCRKGL----LGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEK 238

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           K++ A     +   RG +   V++NTL+   CK   +D    L + +   G  P + TY+
Sbjct: 239 KMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYN 298

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
            +I+GL K  + D A  LL EM  +GL P+ + +++L+ G  + G++D      EA K  
Sbjct: 299 TVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVD------EAIKFF 352

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            ++   G+ P+ ITY  ++ G CK    + A+D    M++RG +    ++T LI G    
Sbjct: 353 HDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYE 412

Query: 324 GKVVEAERMLREM 336
           G   EA  +L E+
Sbjct: 413 GLAKEALELLNEL 425



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
           NG    G   L  + S  +   +E+ N L + L ++G+L+     L++M+  G +PD I 
Sbjct: 63  NGHLGNGHVSLSPIHSLTNFEEIESNNNL-SKLVRNGELEEGFRFLESMVYRGDIPDIIP 121

Query: 418 YNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTSLVS 455
              L+ G CK G      ++     + G V D   Y  L+S
Sbjct: 122 CTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLIS 162


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 199/389 (51%), Gaps = 10/389 (2%)

Query: 18  VAHKMHSQARDLLHLIVSKKGMGSSA-SLFASILETRGTHLPGLV-LDALMIVYVDLGFL 75
           V+ ++  +  DLL  + SKK M     S+F  ++++R +  P +   + ++ +  D   +
Sbjct: 464 VSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS--PDVKNCNRILRILRDKDLM 521

Query: 76  DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
             A++ +R + +   +        L+D   +       L    E+   G +P+   +NVL
Sbjct: 522 SKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVL 581

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           ++ L K+G+ + A+ +  E  K GL  +A ++N LI G+     L E   L+  M   G 
Sbjct: 582 INGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGA 641

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
            P V TY++ I GLCK  R+ DA   L +M    L P+ V + TLI G+C+       G+
Sbjct: 642 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR------LGN 695

Query: 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
           + +A  + DE+ +  L P  +TY  LLDG C++G+LE A  ++ EMI  GI  D V +T 
Sbjct: 696 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 755

Query: 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
           L++G C+ G +  A+    EML  GL+ D   Y   I    K GDT   F L +EM + G
Sbjct: 756 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 815

Query: 376 HLPAVETYNALMNGLCKHGQLKNANMLLD 404
             P +  YN +++GLCK G L+ A+ LL 
Sbjct: 816 FPPDLIIYNVVVDGLCKLGNLEEASELLQ 844



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 182/382 (47%), Gaps = 6/382 (1%)

Query: 61  VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           +LD L+ VY     ++  +  F  + K       + C  ++  +   +L +  +  Y  +
Sbjct: 472 ILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTM 531

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
            ++G  P++  +N L+   CK GK++    +  E  +RG     V++N LING  K    
Sbjct: 532 GEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEF 591

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           ++   L   M  +G++   YTY+ LI G   +  L +A  L  EM  +G +P    + + 
Sbjct: 592 EQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSF 651

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G CK GR      M +A + + +M  N L PD ++Y  L+ G+C+ G+L  A  +  E
Sbjct: 652 IYGLCKLGR------MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDE 705

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           +    +    V +  L+ G CR G++  A+++  EM+  G+ PD  TYT++++  CK G 
Sbjct: 706 LRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGS 765

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                    EM  +G       Y   + G  K G    A  L + ML  G  PD I YN+
Sbjct: 766 LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNV 825

Query: 421 LLEGHCKHGNPEDFDKLQSEKG 442
           +++G CK GN E+  +L  + G
Sbjct: 826 VVDGLCKLGNLEEASELLQKDG 847



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 170/333 (51%), Gaps = 10/333 (3%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           SV + ++L+    K+  ++    VFD+  K  L     + N ++        + +   + 
Sbjct: 469 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 528

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
             M   G++P + TY+ L++  CK  ++     LL EM  RG  PNDV +  LI+G  K 
Sbjct: 529 RTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKK 588

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           G      + ++A+ ++ EM   GL     TY  L+ G+  +G L  AL +++EM+ +G  
Sbjct: 589 G------EFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGAS 642

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
                + + I G C+ G++ +A + L +ML   L PD  +Y  +I  +C+ G+    F L
Sbjct: 643 PTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLL 702

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
             E+RS    P + TYN L++GLC+ G+L+ A  L   M++ G+ PD +TY IL+ G CK
Sbjct: 703 FDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCK 762

Query: 428 HGN----PEDFDKLQSEKGLVSDYACYTSLVSK 456
            G+     E FD++  E   +  YA  T +V +
Sbjct: 763 MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGE 795



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 170/361 (47%), Gaps = 25/361 (6%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           C  + D+M+++ L                SP V   N ++  L  +  +  A  V+   G
Sbjct: 489 CLSVFDKMIKSRL----------------SPDVKNCNRILRILRDKDLMSKAVEVYRTMG 532

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           + G+  T V++NTL++ +CK   + +G  L S M+  G  P+  TY+ LINGL K+   +
Sbjct: 533 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFE 592

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A+ L+ EM + GL  +   +  LI G+   G       + EA  + +EM   G +P   
Sbjct: 593 QAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGL------LAEALSLQEEMVLKGASPTVA 646

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY   + G CK G +  A+    +M+   +  D V++  LI G+CR G +++A  +  E+
Sbjct: 647 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDEL 706

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
             + L P   TY  ++D  C+ G+ +   +L  EM ++G  P + TY  L+NG CK G L
Sbjct: 707 RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSL 766

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSL 453
             A    D ML  G+  D   Y   + G  K G+      LQ E   KG   D   Y  +
Sbjct: 767 SMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVV 826

Query: 454 V 454
           V
Sbjct: 827 V 827



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 1/169 (0%)

Query: 57  LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG 115
           LP +V  + L+  Y  LG L  A   F  LR  Y          L+D + R     V   
Sbjct: 677 LPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQ 736

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
             +E+++ G +P +  + +L++  CK G +  AQ  FDE    GL   + ++ T I G  
Sbjct: 737 LKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGEL 796

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           K  +    F L+  M   G  PD+  Y+ +++GLCK   L++A  LL +
Sbjct: 797 KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK 845


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 190/375 (50%), Gaps = 21/375 (5%)

Query: 99  CLIDRMMRTNLPTVTLGFYLEILDYGYSPSV---YVFNVLMHKLCKEGKIKDAQMVFDEF 155
            L+ +M++  L   +    LEI +  +   +   ++ N +   LCK+GK+  A       
Sbjct: 416 VLVHKMIQGCLKAESPEAALEIFNDSFETWIAHGFMCNKIFLLLCKQGKVDAATSFLRMM 475

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +G+    V +N ++  HC+ KN+D    + S M   G++P+ +TYS LI+G  K    
Sbjct: 476 ENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDE 535

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-----KEARKIVDEMCTNG 270
            +A  ++++M       N+VI+ T+I+G CK G+   A +M     KE R  +   CT  
Sbjct: 536 QNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMG--CT-- 591

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330
                 +Y  ++DGF KEGD +SA++  +EM + GI  + V FT+LI+GFC+  ++  A 
Sbjct: 592 ------SYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLAL 645

Query: 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
            M+ EM    LK D   Y  +ID FCK  D KT + L  E+   G +P V  YN L++G 
Sbjct: 646 EMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGF 705

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDY 447
              G++  A  L   M++ G+  D  TY  +++G  K GN      L SE    G+V D 
Sbjct: 706 RNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDE 765

Query: 448 ACYTSLVSKSSKYRQ 462
             Y  LV+  SK  Q
Sbjct: 766 ILYVVLVNGLSKKGQ 780



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 197/399 (49%), Gaps = 7/399 (1%)

Query: 30  LHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89
           + L++ K+G   +A+ F  ++E +G     +  + +M+ +  +  +D A   F  + +  
Sbjct: 455 IFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKG 514

Query: 90  FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
            +        LID   +            +++   +  +  ++N +++ LCK G+   A+
Sbjct: 515 LQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAK 574

Query: 150 MVFDEFGKRGLHATA-VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
            +     K   ++    S+N++I+G  K  + D        M  +G+ P+V T+++LING
Sbjct: 575 EMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLING 634

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
            CK NR+D A  ++HEM  + L  +   +  LIDG CK        DMK A  +  E+  
Sbjct: 635 FCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKN------DMKTAYTLFSELLE 688

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL P+   Y  L+ GF   G +++A+D+ K+M+  GI  D   +T +I G  + G ++ 
Sbjct: 689 LGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLIL 748

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A  +  E+L +G+ PD+  Y ++++   K G      ++L+EM+     P V  Y+ ++ 
Sbjct: 749 ASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIA 808

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           G  + G L  A  + D ML+ G+V DD  +N+L+ G  +
Sbjct: 809 GHHREGNLNEAFRVHDEMLEKGLVHDDTIFNLLVSGRVE 847



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 180/345 (52%), Gaps = 10/345 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
             + E+L+ G  P+ + +++L+    K    ++A  V ++       A  V +NT+ING 
Sbjct: 505 SIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGL 564

Query: 175 CKAKNLDEGFR-LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
           CK     +    L+++++         +Y+++I+G  KE   D A     EM E G++PN
Sbjct: 565 CKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPN 624

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            V FT+LI+G CK+ R+D+A +M      + EM +  L  D   Y  L+DGFCK+ D+++
Sbjct: 625 VVTFTSLINGFCKSNRMDLALEM------IHEMKSKDLKLDVPAYGALIDGFCKKNDMKT 678

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  +  E+++ G+  +   +  LISGF   GK+  A  + ++M+  G+  D  TYT +ID
Sbjct: 679 AYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMID 738

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
              K+G+      L  E+ + G +P    Y  L+NGL K GQ   A+ +L+ M      P
Sbjct: 739 GLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATP 798

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           + + Y+ ++ GH + GN  +  ++     EKGLV D   +  LVS
Sbjct: 799 NVLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHDDTIFNLLVS 843



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 191/463 (41%), Gaps = 80/463 (17%)

Query: 10  YSTMVHFLVAHK-MHSQARDLLHLIVSKKGMGSSASLFASILETRGT---HLPGLVLDAL 65
           +  ++H L +    H +A +LL + VS       +++  +++++       L     + L
Sbjct: 116 FWVLIHILFSSPHTHDRASNLLVMFVSSNPTLIPSAMVNNLVDSSKRFDFELSSRAFNYL 175

Query: 66  MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           +  Y+    +D A+ CF L+               +DR +   +P               
Sbjct: 176 LNAYIRNRRMDYAVDCFNLM---------------VDRNVVPFVP--------------- 205

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
               YV NVL   L +   I +A+ ++++    G+    V+   L+    + +  +E  +
Sbjct: 206 ----YVNNVL-SSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAMK 260

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP-NDVIFTTLIDGH 244
           +   +   G  PD   +S  +   CK   L  A  LL EM E+G  P +   +T++I   
Sbjct: 261 IFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIVAC 320

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            K       G+M+EA K+ DEM   G+    I  T L+ GFC   +L  ALD    M + 
Sbjct: 321 VKE------GNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEE 374

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP--------------------- 343
           G+  D V F+ +I  FC+  ++ +A  + + M  VG+ P                     
Sbjct: 375 GLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAA 434

Query: 344 ----DDATYTMVIDCF---------CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390
               +D+  T +   F         CK G        L+ M + G  P V  YN +M   
Sbjct: 435 LEIFNDSFETWIAHGFMCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAH 494

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           C+   +  A  +   ML+ G+ P++ TY+IL++G  K+ + ++
Sbjct: 495 CRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQN 537


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 182/384 (47%), Gaps = 29/384 (7%)

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           DA++ F  +R       A     L+  + ++ +       + ++   G + + +V+N ++
Sbjct: 220 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 279

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
           H   K G    A+ +       G+     SFNT+I  +C+     E   ++  ME  G++
Sbjct: 280 HVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVK 339

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--- 253
            DV T+++LI+GLCKE R+ +A  LL EM   G+ P+ V +TTL+DG+C+ G ++ A   
Sbjct: 340 ADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKL 399

Query: 254 --------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
                                     G MKE   +++EM    +  D +T   L++ +CK
Sbjct: 400 RGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCK 459

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            GD+ SAL +++ M++ G++LD   + AL+ GFC+  ++ EA+  L EM+  G  P+ + 
Sbjct: 460 RGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSV 519

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
            + ++D  C   +      +  E+   G  P    Y +L+  LCK G +  A  + + M 
Sbjct: 520 LSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQ 579

Query: 408 DLGVVPDDITYNILLEGHCKHGNP 431
             G+  D + Y  L   +   G P
Sbjct: 580 GKGLEADCLVYATLACAYLTAGKP 603



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 9/276 (3%)

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  R+   M    + PD +  SAL+  L K      A  +  +M   G+  N  ++  ++
Sbjct: 220 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 279

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
               K      AGD   A  ++  M   G+  D+ ++  ++  +C++G    A+ +R+ M
Sbjct: 280 HVCLK------AGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERM 333

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             +G++ D V + +LI G C+  +V EA ++LREM   G+ PD  TYT ++D +C+ GD 
Sbjct: 334 ENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDL 393

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   +L  EM + G LP V TYNA++  LC+ G++K  N+LL+ M +  V  D +T N L
Sbjct: 394 EEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTL 453

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           +  +CK G+     K++    E GL  D   Y +LV
Sbjct: 454 INAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALV 489



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 137/298 (45%), Gaps = 41/298 (13%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G    V  +N L+H LCKE ++K+A  +  E    G+    V++ TL++G+C+A +L+
Sbjct: 335 NQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLE 394

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E  +L+  ME  GM P V TY+A++  LC++ ++ +  +LL+EM ER +  + V   TLI
Sbjct: 395 EAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLI 454

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA------- 294
           + +CK G      DM  A K+   M  +GL  D+ TY  L+ GFCK  +L+ A       
Sbjct: 455 NAYCKRG------DMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEM 508

Query: 295 ----------------------------LDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
                                       L I  E++KRG   D   + +LI   C+ G +
Sbjct: 509 MGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFI 568

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
             A  +  EM   GL+ D   Y  +   +   G       +L EM         + YN
Sbjct: 569 DLAGNVFNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQLYITPQIYN 626



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 127/243 (52%), Gaps = 9/243 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G  P V  +N ++ KLC++GK+K+  ++ +E  +R + A  V+ NTLIN +CK  
Sbjct: 402 EMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRG 461

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++    ++K  M  SG++ D +TY AL++G CK   LD+A+  L EM   G +PN  + +
Sbjct: 462 DMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLS 521

Query: 239 TLIDGHC-KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            ++DG C KN  + +         I DE+   G  PDK  Y  L+   CK+G ++ A ++
Sbjct: 522 WIVDGLCNKNNAVAVLA-------IPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNV 574

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC-FC 356
             EM  +G+E D + +  L   +   GK V A  +L EM K  L      Y     C F 
Sbjct: 575 FNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQLYITPQIYNYKSSCKFA 634

Query: 357 KNG 359
            +G
Sbjct: 635 GDG 637


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 179/357 (50%), Gaps = 29/357 (8%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-R 158
           LI+ + +    +  L  + E+ + G +P V  +N+L+    K+G I +A  +++   K  
Sbjct: 165 LINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGP 224

Query: 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218
            ++    S+N +ING CK    DE F +   M+ +    D+YTYS LI+GLC    LD A
Sbjct: 225 SVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGA 284

Query: 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID----------------------MAGDM 256
             +  EM E G++P+ V++ T+++G+ + GRI+                      +   +
Sbjct: 285 TRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGL 344

Query: 257 KEARKIVDEMCTNGLNPDK------ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
            E  K+ + +    L P+K      +TY +L+ G CK G L  AL I +E      +LD 
Sbjct: 345 FENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDT 404

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
            A++++I+G CR G++ E   +L +M K G KP+      VI+ F +    +   R    
Sbjct: 405 FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGN 464

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           M S G  P V TYN L+NGL K  +   A  L+  ML  G  P+ ITY++L+ G C+
Sbjct: 465 MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQ 521



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 158/299 (52%), Gaps = 6/299 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           +V  +N+L+  L +  K+ +A  +++   ++   A ++++  L++G CK   L++   + 
Sbjct: 333 TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 392

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
              E      D + YS++INGLC+E RLD+   +L +M + G  PN  +   +I+G  + 
Sbjct: 393 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVR- 451

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
                A  +++A +    M + G  P  +TY  L++G  K      A  + KEM+++G +
Sbjct: 452 -----ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWK 506

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + + ++ L++G C+G K+  A  +  + L+ G KPD   + ++I   C +G  +   +L
Sbjct: 507 PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQL 566

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
             EM+    +P + T+N LM G  K    + A+ + D +L  G+ PD I+YNI L+G C
Sbjct: 567 YSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLC 625



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           +G  P +  +N L++ L +  K  +A+  F  F   GL     ++N LI   C+ K  D+
Sbjct: 83  FGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDK 142

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
              L + M G G  PDV++Y  LIN L K   + DA  L  EM ERG+TP+   +  LID
Sbjct: 143 AKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILID 202

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           G  K       GD+  A +I + +     + P+  +Y ++++G CK G  + + +I   M
Sbjct: 203 GFFKK------GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 256

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
            K     D   ++ LI G C  G +  A R+ +EM + G+ PD   Y  +++ + + G  
Sbjct: 257 KKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRI 316

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +    L K M  +G    V +YN L+ GL ++ ++  A  + + + +     D +TY +L
Sbjct: 317 EECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVL 375

Query: 422 LEGHCKHG 429
           + G CK+G
Sbjct: 376 VHGLCKNG 383



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 200/424 (47%), Gaps = 28/424 (6%)

Query: 16  FLVAHKMHSQAR--------DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           F + H+M    R         L+H +     +  +  ++  + E  G     +V + ++ 
Sbjct: 250 FEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN-GVSPDVVVYNTMLN 308

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID-----RMMRTNLPTVTLGFYLEIL- 121
            Y+  G +++ ++ ++++ K        GCR ++      R +  N          E+L 
Sbjct: 309 GYLRAGRIEECLELWKVMEKE-------GCRTVVSYNILIRGLFENAKVDEAISIWELLP 361

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           +         + VL+H LCK G +  A  + +E           +++++ING C+   LD
Sbjct: 362 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 421

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E   +   M   G +P+ Y  +A+ING  + ++L+DA      M  +G  P  V + TLI
Sbjct: 422 EVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 481

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G  K  R        EA  +V EM   G  P+ ITY++L++G C+   L+ AL++  + 
Sbjct: 482 NGLSKAERFS------EAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 535

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           +++G + D      +I G C  GKV +A ++  EM +    P+  T+  +++ F K  D 
Sbjct: 536 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDF 595

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   ++   +   G  P + +YN  + GLC   ++ +A   L+  +D GV+P  IT+NIL
Sbjct: 596 ERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 655

Query: 422 LEGH 425
           ++G+
Sbjct: 656 VQGY 659



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 168/355 (47%), Gaps = 33/355 (9%)

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +Y ++ L+H LC  G +  A  V+ E  + G+    V +NT++NG+ +A  ++E   L  
Sbjct: 265 LYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWK 324

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           VME  G R  V +Y+ LI GL +  ++D+A  +   + E+    + + +  L+ G CKNG
Sbjct: 325 VMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNG 383

Query: 249 RIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITYT 279
            ++ A                             G + E   ++D+M  +G  P+     
Sbjct: 384 YLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCN 443

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +++GF +   LE AL     M+ +G     V +  LI+G  +  +  EA  +++EML+ 
Sbjct: 444 AVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQK 503

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G KP+  TY+++++  C+         L  +    G  P V+ +N +++GLC  G++++A
Sbjct: 504 GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA 563

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYT 451
             L   M     VP+ +T+N L+EG  K  + E   K+     + GL  D   Y 
Sbjct: 564 LQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYN 618



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 209/478 (43%), Gaps = 47/478 (9%)

Query: 27  RDLLHLIVSKKGMGSSASLFASILETRG-THLPGL-------VLDALMIV--YVDLGFLD 76
           + ++ L+ S+K   S+ S+F S+    G +H P +       + D  ++   Y      D
Sbjct: 11  KRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAYAKNSMPD 70

Query: 77  DAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135
            A+  F+ + + +   P  R    L++ ++ +N       F+L     G SP++  +N+L
Sbjct: 71  QALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNIL 130

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
           +   C++ +   A+ + +    +G      S+ TLIN   K   + +  +L   M   G+
Sbjct: 131 IKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGV 190

Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCE-RGLTPNDVIFTTLIDGHCKNGRIDM-- 252
            PDV  Y+ LI+G  K+  + +A  +   + +   + PN   +  +I+G CK G+ D   
Sbjct: 191 TPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESF 250

Query: 253 ---------------------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
                                      +G++  A ++  EM  NG++PD + Y  +L+G+
Sbjct: 251 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 310

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
            + G +E  L++ K M K G     V++  LI G     KV EA  +   + +     D 
Sbjct: 311 LRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADS 369

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY +++   CKNG       +L+E  +         Y++++NGLC+ G+L     +LD 
Sbjct: 370 MTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQ 429

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           M   G  P+    N ++ G  +    ED    F  + S KG       Y +L++  SK
Sbjct: 430 MTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVS-KGCFPTVVTYNTLINGLSK 486



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           IL YG  P +  +N+ +  LC   +I DA    ++   RG+  TA+++N L+ G+   K 
Sbjct: 605 ILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKG 664

Query: 180 LDEGFRLKSVMEGS-GMR 196
             E   + + M+G+ GM+
Sbjct: 665 YMEPVFVPASMKGNPGMQ 682


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 208/457 (45%), Gaps = 63/457 (13%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T+ +++++++ ++    H +A +  + +V  K M                 LP ++   L
Sbjct: 142 TVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNI---------------LPNVLSFNL 186

Query: 66  MIVYV-DLGFLDDAIQCFRLLRKHYFRIPARGCR-------CLIDRMMRTNLPTVTLGFY 117
           +I  +  LG +D+AI+ FR        +P R C         L+D + + +     +   
Sbjct: 187 IIKSMCKLGLVDNAIELFR-------EMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLL 239

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
            E+   G  PS   FNVL++ LCK+G       + D    +G     V++NTLI+G C  
Sbjct: 240 DEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLK 299

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             LD+   L   M  S   P+  TY  +INGL K+ R  D   +L  M ERG   N+ ++
Sbjct: 300 GKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVY 359

Query: 238 TTLIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEMCT 268
           + L+ G  K G+ + A  +                              EA KI+ EM  
Sbjct: 360 SVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTD 419

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G  P+  T++ L+ GF + G+   A+++ K+M K     + V ++ LI G C+ GKV+E
Sbjct: 420 KGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVME 479

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM---RSDGHLPAVETYNA 385
           A  +  +ML  G +PD   Y+ +I   C  G  +   +L  EM     D   P V TYN 
Sbjct: 480 AMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQ-PDVITYNI 538

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
           L N LCK   +  A  LL++MLD G  PD +T NI L
Sbjct: 539 LFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFL 575



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 177/358 (49%), Gaps = 10/358 (2%)

Query: 76  DDAIQCF-RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL---DYGYSPSVYV 131
           + AI+ F R+  + Y +   +    +++ +++       L FY  ++   D    P+V  
Sbjct: 124 NKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLS 183

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+++  +CK G + +A  +F E   R     A ++ TL++G CK   +DE   L   M+
Sbjct: 184 FNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQ 243

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G  P   T++ LINGLCK+        L+  M  +G  PN+V + TLI G C  G++D
Sbjct: 244 IEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 303

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A  ++D M ++   P+++TY  +++G  K+G       +   M +RG  ++  
Sbjct: 304 ------KALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEY 357

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++ L+SG  + GK  EA R+ +E +  G K +   Y+ ++D  C++       ++L EM
Sbjct: 358 VYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEM 417

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
              G  P   T+++LM G  + G    A  +   M  +    +++ Y++L+ G CK G
Sbjct: 418 TDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDG 475



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 171/356 (48%), Gaps = 13/356 (3%)

Query: 106 RTNLPTVTLG-FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLH-- 161
           + +LP   +  FY    ++   P+V  FN +++ + + G    A   ++   G + ++  
Sbjct: 119 KAHLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNIL 178

Query: 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221
              +SFN +I   CK   +D    L   M      PD YTY  L++GLCK +R+D+A  L
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
           L EM   G  P+   F  LI+G CK G      D     K+VD M   G  P+++TY  L
Sbjct: 239 LDEMQIEGCFPSPATFNVLINGLCKKG------DFTRVTKLVDNMFLKGCVPNEVTYNTL 292

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           + G C +G L+ AL +   M+      + V +  +I+G  + G+ ++  R+L  M + G 
Sbjct: 293 IHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGY 352

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
             ++  Y++++    K G ++   RL KE    G       Y+AL++GLC+  +   A  
Sbjct: 353 IVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMK 412

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           +L  M D G  P+  T++ L++G  + GN     +  K  ++     +  CY+ L+
Sbjct: 413 ILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLI 468



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 32/365 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKI---KDAQMVFDEFGKRGLHATAV------- 165
           FY  I +Y YS        +++++  E ++   K   ++F  +GK  L   A+       
Sbjct: 75  FYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGKAHLPNKAIELFYRMS 134

Query: 166 ----------SFNTLINGHCKAKNLDEGFRLKSVMEGS---GMRPDVYTYSALINGLCKE 212
                     SFN+++N   +A   D      + + G+    + P+V +++ +I  +CK 
Sbjct: 135 FEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKL 194

Query: 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272
             +D+A  L  EM  R   P+   + TL+DG CK  RID      EA  ++DEM   G  
Sbjct: 195 GLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRID------EAVSLLDEMQIEGCF 248

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           P   T+ +L++G CK+GD      +   M  +G   + V +  LI G C  GK+ +A  +
Sbjct: 249 PSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL 308

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L  M+     P++ TY  +I+   K G    G R+L  M   G++     Y+ L++GL K
Sbjct: 309 LDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFK 368

Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYAC 449
            G+ + A  L    +D G   + + Y+ L++G C+   P++  K+ SE   KG   +   
Sbjct: 369 EGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFT 428

Query: 450 YTSLV 454
           ++SL+
Sbjct: 429 FSSLM 433



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 145/359 (40%), Gaps = 72/359 (20%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVS------------------KKGMGSSASLFASIL 50
            Y+T++H L       +A  LL  +VS                  K+G     +    ++
Sbjct: 288 TYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLM 347

Query: 51  ETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP 110
           E RG  +   V   L+      G  ++A++ F+       ++       L+D + R   P
Sbjct: 348 EERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKP 407

Query: 111 TVTLGFYLEILDYGYSPSVYVFN-----------------------------------VL 135
              +    E+ D G +P+ + F+                                   VL
Sbjct: 408 DEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVL 467

Query: 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME--GS 193
           +H LCK+GK+ +A MV+ +    G     V+++++I G C A +++E  +L + M     
Sbjct: 468 IHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEP 527

Query: 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV---IFTTLIDGHCKNGRI 250
             +PDV TY+ L N LCK++ +  A  LL+ M +RG  P+ V   IF  ++       + 
Sbjct: 528 DSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQ- 586

Query: 251 DMAGDMKE-------------ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           D A  + E             A KIV+ M    L+P   T+  ++   C+   +++ +D
Sbjct: 587 DGAKFLDELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELCQPKKIQAVID 645


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 215/422 (50%), Gaps = 30/422 (7%)

Query: 56  HLP-GLVLDALMIVYVDLGFLDDAIQCFRLLRK------HYFRIPARGCRCLIDRMMRTN 108
           H+P     + LM + +   + D A   F  L+       + F I  +GC C     ++  
Sbjct: 120 HVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGC-CEAGYFVK-- 176

Query: 109 LPTVTLGFYLEIL--DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166
                 GF L  +  ++G SP+V ++  L+   CK G +  A+ +F +  + GL     +
Sbjct: 177 ------GFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHT 230

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           ++ L+NG  K     EGF++   M+ SG+ P+ Y Y+ LI+  C    +D A  +  EM 
Sbjct: 231 YSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMR 290

Query: 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286
           E+G+    + +  LI G C+  +        EA K+V ++   GL+P+ +TY IL++GFC
Sbjct: 291 EKGIACGVMTYNILIGGLCRGKKFG------EAVKLVHKVNKVGLSPNIVTYNILINGFC 344

Query: 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346
             G +++A+ +  ++   G+    V +  LI+G+ +   +  A  +++EM +  + P   
Sbjct: 345 DVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKV 404

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           TYT++ID F +   T+    +   M   G +P V TY+ L++GLC HG +K A+ L  ++
Sbjct: 405 TYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSL 464

Query: 407 LDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS---LVSKSSKY 460
            ++ + P+ + YN ++ G+CK G+     +L +E    G+V + A + S   L+ +  K+
Sbjct: 465 GEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKW 524

Query: 461 RQ 462
           ++
Sbjct: 525 KE 526



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 155/298 (52%), Gaps = 6/298 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+ Y +N L+ + C  G +  A  VF E  ++G+    +++N LI G C+ K   E 
Sbjct: 258 GIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEA 317

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   +   G+ P++ TY+ LING C   ++D A  L +++   GL+P  V + TLI G
Sbjct: 318 VKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAG 377

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
           + K        ++  A  +V EM    + P K+TYTIL+D F +    E A ++   M K
Sbjct: 378 YSK------VENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEK 431

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            G+  D   ++ LI G C  G + EA ++ + + ++ L+P+   Y  +I  +CK G +  
Sbjct: 432 SGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYR 491

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
             RLL EM   G +P V ++ + +  LC+  + K A +LL  M++ G+ P    Y ++
Sbjct: 492 ALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 172/345 (49%), Gaps = 10/345 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L F   ++  G+ P    FN LM  L +      A  +F+E  K  +   A SF  +I 
Sbjct: 108 ALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL-KSKVVLDAYSFGIMIK 166

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G C+A    +GFRL +++E  G+ P+V  Y+ LI+G CK   +  A+ L  +M   GL P
Sbjct: 167 GCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVP 226

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N   ++ L++G  K G        +E  ++ + M  +G+ P+   Y  L+  +C  G ++
Sbjct: 227 NPHTYSVLMNGFFKQGL------QREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVD 280

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM ++GI    + +  LI G CRG K  EA +++ ++ KVGL P+  TY ++I
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
           + FC  G   T  RL  +++S G  P + TYN L+ G  K   L  A  L+  M +  + 
Sbjct: 341 NGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIA 400

Query: 413 PDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           P  +TY IL++   +    E   +   L  + GLV D   Y+ L+
Sbjct: 401 PSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLI 445



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 6/321 (1%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
             LM  +   G   +  Q +  +++      A    CLI       +       + E+ +
Sbjct: 232 SVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMRE 291

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
            G +  V  +N+L+  LC+  K  +A  +  +  K GL    V++N LING C    +D 
Sbjct: 292 KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDT 351

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
             RL + ++ SG+ P + TY+ LI G  K   L  A  L+ EM ER + P+ V +T LID
Sbjct: 352 AVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILID 411

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
              +    + A +M         M  +GL PD  TY++L+ G C  G+++ A  + K + 
Sbjct: 412 AFARLNYTEKACEMHSL------MEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLG 465

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
           +  ++ ++V +  +I G+C+ G    A R+L EM+  G+ P+ A++   I   C++   K
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWK 525

Query: 363 TGFRLLKEMRSDGHLPAVETY 383
               LL +M + G  P+V  Y
Sbjct: 526 EAELLLGQMINSGLKPSVSLY 546



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 142/310 (45%), Gaps = 24/310 (7%)

Query: 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG----FRLKSV 189
           +L+ K+ K    K A ++F+    +GL  T+ S + ++N    +  L +      RL S 
Sbjct: 9   ILIQKMVKVPPTK-ALLLFNTATYQGLQHTSHSISFILNHLLSSGMLPQAQSLILRLISG 67

Query: 190 MEGSGMRPDV----------YT--YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
              S +   +          YT  Y  ++N     +  D A   LH M   G  P    F
Sbjct: 68  RIPSSLMLQLTQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTF 127

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
             L+    ++   D      +A  I +E+  + +  D  ++ I++ G C+ G       +
Sbjct: 128 NNLMCLLIRSNYFD------KAWWIFNEL-KSKVVLDAYSFGIMIKGCCEAGYFVKGFRL 180

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
              + + G+  + V +T LI G C+ G V+ A+ +  +M ++GL P+  TY+++++ F K
Sbjct: 181 LAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFK 240

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
            G  + GF++ + M+  G +P    YN L++  C  G +  A  +   M + G+    +T
Sbjct: 241 QGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMT 300

Query: 418 YNILLEGHCK 427
           YNIL+ G C+
Sbjct: 301 YNILIGGLCR 310


>gi|255574125|ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532604|gb|EEF34390.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 168/344 (48%), Gaps = 11/344 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++L  G+ P +   N L++ LC  G ++ A  +  E  + G      +FNT I G+C   
Sbjct: 150 KLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCATFNTFIKGYCLLN 209

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE--RGLTPNDVI 236
           N+D+   L S M  SG++P+  T + L++ LCK   L+DA+ LL E+ +       N + 
Sbjct: 210 NVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKKLLGELLDDNEKARVNLIT 269

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
            T L+DG  KN      GDM +A  I   M  N    D + Y +L+ GFC   +++ A  
Sbjct: 270 STILMDGCIKN------GDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLTRNMKLAYS 323

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
              +M+KRG+  D   +  LISG C+ GK+ EA  +   ML++G+ PD  +Y +VI   C
Sbjct: 324 YSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGLC 383

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             GD       L  M     +P    +N +++G  + G   NA  + D ML  GVVP+  
Sbjct: 384 TRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVF 443

Query: 417 TYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLVSKS 457
           TYN L+    K GN  D     K+    GL  D   Y  L+  +
Sbjct: 444 TYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTA 487



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 162/351 (46%), Gaps = 13/351 (3%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF--GKRGLHATAVSFNTL 170
            L  +  + D G  P+    N+L+H LCK G ++DA+ +  E            ++   L
Sbjct: 214 ALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKKLLGELLDDNEKARVNLITSTIL 273

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
           ++G  K  ++ +   +   M  +    D   Y+ LI+G C    +  A     +M +RGL
Sbjct: 274 MDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLTRNMKLAYSYSCDMLKRGL 333

Query: 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD 290
            P+   + TLI G CK      AG + EA  I D M   G+ PD+I+Y I++ G C  GD
Sbjct: 334 LPDIFTYNTLISGLCK------AGKLYEACYIHDVMLRMGVAPDQISYKIVIQGLCTRGD 387

Query: 291 LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
           +  A +    M+++ +  +   +  +I GF R G    A  +  +ML  G+ P+  TY  
Sbjct: 388 VLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVFTYNA 447

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           +I    K G+    + L K M   G  P V TYN L+   C  G++  A  L   ML  G
Sbjct: 448 LIHAQVKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYEMLRSG 507

Query: 411 VVPDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKS 457
             PD ITY  L+ G C  GN     E F KLQ+  GL  D+  +  L+  +
Sbjct: 508 HEPDIITYTELIRGLCMRGNMKEAKELFAKLQNT-GLTVDHVPFQLLIKNT 557



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 155/315 (49%), Gaps = 20/315 (6%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFG----KRGLHATAVSFN-----TLINGHCKA 177
           P V VFNVL   L  +G ++  + + +  G    K GL   +V  +     +L+   C A
Sbjct: 82  PQV-VFNVLDAML--KGSLERLKSMRESIGISSVKVGLAGRSVDVSYAGHASLVRDLCLA 138

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             L     L+  +   G  PD+ T++ L+NGLC    L  A+ L+ EM E G +PN   F
Sbjct: 139 GKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCATF 198

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            T I G+C    +D      +A  +   M  +G+ P+++T  IL+   CK G LE A  +
Sbjct: 199 NTFIKGYCLLNNVD------KALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKKL 252

Query: 298 RKEMI--KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
             E++       ++ +  T L+ G  + G +V+A  +   M +     D   Y ++I  F
Sbjct: 253 LGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGF 312

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           C   + K  +    +M   G LP + TYN L++GLCK G+L  A  + D ML +GV PD 
Sbjct: 313 CLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQ 372

Query: 416 ITYNILLEGHCKHGN 430
           I+Y I+++G C  G+
Sbjct: 373 ISYKIVIQGLCTRGD 387



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
           +AG +  A  +  ++   G  PD +T+  L++G C  GDL+ A  + KEM++ G   +  
Sbjct: 137 LAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCA 196

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            F   I G+C    V +A  +   M   G+KP+  T  +++   CK G  +   +LL E+
Sbjct: 197 TFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKKLLGEL 256

Query: 372 RSDGHLPAVE--TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             D     V   T   LM+G  K+G +  A  +   M     + D + YN+L+ G C   
Sbjct: 257 LDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLTR 316

Query: 430 NPE---DFDKLQSEKGLVSDYACYTSLVS 455
           N +    +     ++GL+ D   Y +L+S
Sbjct: 317 NMKLAYSYSCDMLKRGLLPDIFTYNTLIS 345



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%)

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R +++      +L+   C  GK+  A  + R++L  G  PD  T+  +++  C +GD + 
Sbjct: 119 RSVDVSYAGHASLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQK 178

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              L+KEM   G  P   T+N  + G C    +  A  L  +M D GV P+ +T NIL+ 
Sbjct: 179 ADCLIKEMLEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVH 238

Query: 424 GHCKHGNPEDFDKLQSE 440
             CK G  ED  KL  E
Sbjct: 239 ALCKRGLLEDAKKLLGE 255


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 163/306 (53%), Gaps = 6/306 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P ++ +N ++  +CKEG +  A  +      +G     +S+N L+       
Sbjct: 249 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQG 308

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +EG +L + M      P+V TYS LI  LC++ ++++A  LL  M E+GLTP+   + 
Sbjct: 309 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYD 368

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   C+ GR+D+A +  E       M ++G  PD + Y  +L   CK G  + AL+I 
Sbjct: 369 PLIAAFCREGRLDVAIEFLET------MISDGCLPDIVNYNTVLATLCKNGKADQALEIF 422

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++ + G   ++ ++  + S     G  + A  M+ EM+  G+ PD+ TY  +I C C+ 
Sbjct: 423 GKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCRE 482

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G     F LL +MRS    P+V TYN ++ G CK  ++++A  +LD+M+  G  P++ TY
Sbjct: 483 GMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTY 542

Query: 419 NILLEG 424
            +L+EG
Sbjct: 543 TVLIEG 548



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 181/399 (45%), Gaps = 36/399 (9%)

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+   V  G+  D I C +L+ K +F +               N+P       +EIL+  
Sbjct: 107 LLETMVRKGYNPDVILCTKLI-KGFFTL--------------RNVPKAVR--VMEILEKF 149

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P V+ +N L++  CK  +I DA  V D    +      V++N +I   C    LD   
Sbjct: 150 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLAL 209

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           ++   +     +P V TY+ LI     E  +D+A  LL EM  RGL P+   + T+I G 
Sbjct: 210 KVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGM 269

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G +D A +M      +  +   G  PD I+Y ILL     +G  E    +  +M   
Sbjct: 270 CKEGMVDRAFEM------IRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 323

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
             + + V ++ LI+  CR GK+ EA  +L+ M + GL PD  +Y  +I  FC+ G     
Sbjct: 324 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 383

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
              L+ M SDG LP +  YN ++  LCK+G+   A  +   + ++G  P+  +YN +   
Sbjct: 384 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 443

Query: 425 HCKHGNPEDFDKLQS--------EKGLVSDYACYTSLVS 455
               G     DK+++          G+  D   Y S++S
Sbjct: 444 LWSSG-----DKIRALHMILEMVSNGIDPDEITYNSMIS 477



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 183/381 (48%), Gaps = 7/381 (1%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL+  +  +  +DDA +    +R   F         +I  +       + L    ++L 
Sbjct: 158 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLS 217

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
               P+V  + +L+     EG + +A  + DE   RGL     ++NT+I G CK   +D 
Sbjct: 218 DNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDR 277

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            F +   +E  G  PDV +Y+ L+  L  + + ++ E L+ +M      PN V ++ LI 
Sbjct: 278 AFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILIT 337

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C++G+I+      EA  ++  M   GL PD  +Y  L+  FC+EG L+ A++  + MI
Sbjct: 338 TLCRDGKIE------EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 391

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G   D V +  +++  C+ GK  +A  +  ++ +VG  P+ ++Y  +      +GD  
Sbjct: 392 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 451

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               ++ EM S+G  P   TYN++++ LC+ G +  A  LL  M      P  +TYNI+L
Sbjct: 452 RALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVL 511

Query: 423 EGHCKHGNPED-FDKLQSEKG 442
            G CK    ED  D L S  G
Sbjct: 512 LGFCKAHRIEDAIDVLDSMVG 532



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 73/371 (19%)

Query: 157 KRGLHATAVSFN-----TLINGHCKAKNLDEGFRLKSVMEGSGM---------------- 195
           +R  H+ ++ F       + +  C++ N  E   L   M   G                 
Sbjct: 73  RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 132

Query: 196 ------------------RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
                             +PDV+ Y+ALING CK NR+DDA  +L  M  +  +P+ V +
Sbjct: 133 LRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 192

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
             +I   C  G++D+A                             G + EA K++DEM +
Sbjct: 193 NIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS 252

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL PD  TY  ++ G CKEG ++ A ++ + +  +G E D +++  L+      GK  E
Sbjct: 253 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEE 312

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
            E+++ +M      P+  TY+++I   C++G  +    LLK M+  G  P   +Y+ L+ 
Sbjct: 313 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 372

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLV 444
             C+ G+L  A   L+TM+  G +PD + YN +L   CK+G      E F KL  E G  
Sbjct: 373 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL-GEVGCS 431

Query: 445 SDYACYTSLVS 455
            + + Y ++ S
Sbjct: 432 PNSSSYNTMFS 442



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 6/291 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N+L+  L  +GK ++ + +  +          V+++ LI   C+   ++E 
Sbjct: 289 GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 348

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L  +M+  G+ PD Y+Y  LI   C+E RLD A   L  M   G  P+ V + T++  
Sbjct: 349 MNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLAT 408

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKNG+ D      +A +I  ++   G +P+  +Y  +       GD   AL +  EM+ 
Sbjct: 409 LCKNGKAD------QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVS 462

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI+ D + + ++IS  CR G V +A  +L +M      P   TY +V+  FCK    + 
Sbjct: 463 NGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIED 522

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
              +L  M  +G  P   TY  L+ G+   G    A  L + ++ +  + +
Sbjct: 523 AIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISE 573



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L   LE++  G  P    +N ++  LC+EG +  A  +  +      H + V++N ++ G
Sbjct: 454 LHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLG 513

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            CKA  +++   +   M G+G RP+  TY+ LI G+
Sbjct: 514 FCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGI 549


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 209/439 (47%), Gaps = 65/439 (14%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           ++F  IL+T G  +  +V + L+    D   LD+A           +R+P  GC   +  
Sbjct: 216 AVFGLILKT-GWRVNHIVFNQLLKGLCDAKRLDEATNIL------LWRMPEFGCTPNV-- 266

Query: 104 MMRTNLPTVTLGF--------YLEIL-----DYGYS--PSVYVFNVLMHKLCKEGKIKDA 148
               +  T+  GF         LE+L     D G S  P V  +N +++   +EG++  A
Sbjct: 267 ---VSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKA 323

Query: 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
             +F +   RG+    V++NT+I+G CKA+ +D    +   M   G++P   TY+ LI+G
Sbjct: 324 YNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHG 383

Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD------------- 255
                +  +   LL EM    L P+  I+  L+D  CKNGR   A +             
Sbjct: 384 YLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPD 443

Query: 256 --MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL------------------ 295
             + EA  I D+M   GL+P+ + Y  L+D  CK G ++ A+                  
Sbjct: 444 AMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEK 503

Query: 296 -----DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM 350
                ++  EM+ +GI LD V F  L+   CR G+V+EA+R++  ML+VG++PD  +Y  
Sbjct: 504 WEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNT 563

Query: 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
           ++D  C  G T    +LL  M S G  P   TYN L++G CK  ++ +A  LL  ML  G
Sbjct: 564 LVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNG 623

Query: 411 VVPDDITYNILLEGHCKHG 429
             PD +TYN +L G  + G
Sbjct: 624 PTPDVVTYNTILHGLFQTG 642



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 180/369 (48%), Gaps = 41/369 (11%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +L+++D G  P V  +N ++  LCK   +  A+ VF +   +G+  +  ++N LI+G+ 
Sbjct: 326 LFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYL 385

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR--------------------- 214
                 E  RL   M    + PD + Y+ L++ LCK  R                     
Sbjct: 386 STGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAM 445

Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------GDMK 257
           +D+A  +  +M ++GL+PN V +  LID  CK GR+D A                    +
Sbjct: 446 IDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWE 505

Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
           +A ++V EM   G+  D + +  L+   C+EG +  A  + + M++ G+  D +++  L+
Sbjct: 506 KAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLV 565

Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
            G C  G+  EA ++L  M+ +GLKP++ TY  ++  +CK       + LL+EM  +G  
Sbjct: 566 DGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPT 625

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG-NPEDFDK 436
           P V TYN +++GL + G+   A  L   M++     D  TYNI+L G CK+    E F  
Sbjct: 626 PDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKM 685

Query: 437 LQS--EKGL 443
            QS   KGL
Sbjct: 686 FQSLCSKGL 694



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 192/402 (47%), Gaps = 24/402 (5%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASI-----LETRGTHLPGLVLDA 64
           Y+ ++ +L  +   ++AR++   ++ +KG+   A +  ++     +  +G     +   A
Sbjct: 412 YALLLDYLCKNGRCTEARNIFDSVI-RKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGA 470

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+     LG +DDAI  F  +    + +      C +++  +            E+LD G
Sbjct: 471 LIDALCKLGRVDDAILKFNQMINEVYGL------CTVEKWEKAE------ELVFEMLDQG 518

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
               V VFN LM  LC+EG++ +AQ + +   + G+    +S+NTL++GHC     DE  
Sbjct: 519 IRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAA 578

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           +L  VM   G++P+ +TY+ L++G CK  R+DDA  LL EM   G TP+ V + T++ G 
Sbjct: 579 KLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGL 638

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
            + GR        EA+++   M  +    D  TY I+L+G CK   ++ A  + + +  +
Sbjct: 639 FQTGRF------SEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSK 692

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
           G++L  + F  +I    +GGK  +A  +   +   GL PD  TY ++ +   K G  +  
Sbjct: 693 GLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEEL 752

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             L   M  +G  P     NAL+      G +  A   L  +
Sbjct: 753 GVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKL 794



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 227/526 (43%), Gaps = 76/526 (14%)

Query: 1   PHFRLTLH--AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP 58
           P F  T +  +Y+T+V          +A +LLH++   +G+     + +      G    
Sbjct: 258 PEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFRE 317

Query: 59  GLVLDA--LMIVYVDLGFLDDAIQCFRLL-----------RKHYFRI-------PARGC- 97
           G V  A  L +  +D G   D +    ++            K  F+        P+ G  
Sbjct: 318 GQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTY 377

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
            CLI   + T      +    E+  +   P  +++ +L+  LCK G+  +A+ +FD   +
Sbjct: 378 NCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIR 437

Query: 158 RGLHATA-----------------------------------------VSFNTLIN---G 173
           +G+   A                                         + FN +IN   G
Sbjct: 438 KGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYG 497

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            C  +  ++   L   M   G+R DV  ++ L+  LC+E R+ +A+ L+  M   G+ P+
Sbjct: 498 LCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPD 557

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293
            + + TL+DGHC  GR D      EA K++D M + GL P++ TY  LL G+CK   ++ 
Sbjct: 558 VISYNTLVDGHCLTGRTD------EAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDD 611

Query: 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353
           A  + +EM+  G   D V +  ++ G  + G+  EA+ +   M+    + D  TY ++++
Sbjct: 612 AYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILN 671

Query: 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
             CKN      F++ + + S G    + T+N ++  L K G+ ++A  L  T+   G+VP
Sbjct: 672 GLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVP 731

Query: 414 DDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSK 456
           D  TY ++ E   K G+ E+   L S   E G   +     +LV +
Sbjct: 732 DVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRR 777



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 179/380 (47%), Gaps = 57/380 (15%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P    +++L+   C+ G+++    VF    K G     + FN L+ G C AK LDE   
Sbjct: 192 APDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATN 251

Query: 186 -LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGLT-PNDVI-FTTLI 241
            L   M   G  P+V +Y+ L+ G C ENR ++A  LLH M  ++GL+ P DV+ + T+I
Sbjct: 252 ILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVI 311

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +G  + G++D      +A  +  +M   G+ PD +TY  ++DG CK   ++ A  + ++M
Sbjct: 312 NGFFREGQVD------KAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQM 365

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD- 360
           + +G++  N  +  LI G+   GK  E  R+L EM    L+PD   Y +++D  CKNG  
Sbjct: 366 LDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRC 425

Query: 361 ----------TKTGFR----------LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
                      + G +          +  +MR  G  P V  Y AL++ LCK G++ +A 
Sbjct: 426 TEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAI 485

Query: 401 M-----------------------LLDTMLDLGVVPDDITYNILLEGHCKHG---NPEDF 434
           +                       L+  MLD G+  D + +N L+   C+ G     +  
Sbjct: 486 LKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRL 545

Query: 435 DKLQSEKGLVSDYACYTSLV 454
            +L    G+  D   Y +LV
Sbjct: 546 IELMLRVGVRPDVISYNTLV 565



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 10/219 (4%)

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
           C   + P+   ++ LI   C+ GR++          +   +   G   + I +  LL G 
Sbjct: 187 CSDKVAPDRCTYSILIGCFCRMGRLE------HGFAVFGLILKTGWRVNHIVFNQLLKGL 240

Query: 286 CKEGDLESALDIR-KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK---VGL 341
           C    L+ A +I    M + G   + V++  L+ GFC   +  EA  +L  M     +  
Sbjct: 241 CDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSC 300

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD  +Y  VI+ F + G     + L  +M   G  P V TYN +++GLCK   +  A  
Sbjct: 301 PPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKA 360

Query: 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           +   MLD GV P + TYN L+ G+   G  ++  +L  E
Sbjct: 361 VFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEE 399


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  + + G+ P+V  +N L+H LC  GK+ +A  V  +  + G      ++  LI+
Sbjct: 338 ALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALID 397

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  KA +L     + + M  +G  P+V  Y++++N LC+ +    A  L+ +M      P
Sbjct: 398 GFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPP 457

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V F T I G C +GR++ A ++        +M   G +P+  TY  +LDG  KE  ++
Sbjct: 458 NTVTFNTFIKGLCCSGRVECAINL------FCQMEQYGCSPNIKTYNEVLDGLLKENRIK 511

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            AL++  EM ++G+EL+ V +  +  GFC  GK  EA ++L +ML  G+KPD  TY  + 
Sbjct: 512 EALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLT 571

Query: 353 DCFCKNGDTKTGFRLLKEMRSDG-HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
             +C  G  KT  +LL ++ + G  +P V  Y +L+ G+C    ++ A + LD ML+ G+
Sbjct: 572 YAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGI 631

Query: 412 VPDDITYNILLEG 424
             +  T+N L+ G
Sbjct: 632 CLNAATWNALVRG 644



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 172/373 (46%), Gaps = 45/373 (12%)

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L   + P+V V+N L++  C+E K+K+  ++  +  ++G+    ++++T+I+      N+
Sbjct: 241 LSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNV 300

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
           +    + + M   G  P+VYT+++L+ G     R+ +A  + + M E G  PN V + TL
Sbjct: 301 ELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTL 360

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           I G C +G+      M EA  +  +M  NG +P+  TY  L+DGF K GDL  A +I  +
Sbjct: 361 IHGLCSHGK------MGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNK 414

Query: 301 MIKRG------------------------------IELDN-----VAFTALISGFCRGGK 325
           M+  G                              +  DN     V F   I G C  G+
Sbjct: 415 MMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGR 474

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V  A  +  +M + G  P+  TY  V+D   K    K    L+ EM   G    + TYN 
Sbjct: 475 VECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNT 534

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----FDKLQSEK 441
           +  G C  G+ + A  LL  ML  GV PD ITYN L   +C  G  +      DKL +  
Sbjct: 535 IFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGG 594

Query: 442 GLVSDYACYTSLV 454
             V + A YTSL+
Sbjct: 595 KWVPEVAAYTSLL 607



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 168/363 (46%), Gaps = 36/363 (9%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +I+   R  L    L  +  I ++G  P+V ++N L+  +  E + +  + ++    + G
Sbjct: 120 VINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDG 179

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS---------------- 203
                 ++N L+   CK   +D   +L   M   G  PDV +Y+                
Sbjct: 180 KEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAR 239

Query: 204 --------------ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
                         ALING C+E ++ +  LLL +M E+G+ PN + ++T+I      G 
Sbjct: 240 ELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGN 299

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +++      A  +  +M   G +P+  T+T L+ G+   G +  AL+I   M + G E +
Sbjct: 300 VEL------ALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPN 353

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            VA+  LI G C  GK+ EA  +  +M + G  P+ +TY  +ID F K GD      +  
Sbjct: 354 VVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWN 413

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           +M ++G +P V  Y +++N LC+      A  L++ M      P+ +T+N  ++G C  G
Sbjct: 414 KMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSG 473

Query: 430 NPE 432
             E
Sbjct: 474 RVE 476



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 20/334 (5%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           + +++ KL +E  +   Q +  +    G+  +   F  +IN + +    ++  ++   + 
Sbjct: 82  YQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIR 141

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P V  Y+ L++ +  ENR    E +   M   G  PN   +  L+   CKN R+D
Sbjct: 142 EFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVD 201

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA--LDIRKEMIKRGIELD 309
                  A K++ EM   G  PD ++YT ++    K G +E A  L IR +         
Sbjct: 202 ------GACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQ--------P 247

Query: 310 NVA-FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           NV+ + ALI+GFCR  KV E   +L +M++ G+ P+  TY+ VI      G+ +    + 
Sbjct: 248 NVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVW 307

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
            +M   G  P V T+ +LM G    G++  A  + + M + G  P+ + YN L+ G C H
Sbjct: 308 AKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSH 367

Query: 429 GNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
           G   +   + S+    G   + + Y +L+   +K
Sbjct: 368 GKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAK 401



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%)

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
           ++TY I+++   +E D++    + ++M   GI      F  +I+ + R G   +A +M  
Sbjct: 79  QLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFY 138

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
            + + G +P    Y  ++D        +    +   M+ DG  P V TYN L+  LCK+ 
Sbjct: 139 RIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNN 198

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438
           ++  A  LL  M + G  PD ++Y  ++    K G  E+  +L 
Sbjct: 199 RVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELS 242



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 18/236 (7%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y++MV+ L    M SQA  L+  + +     ++         T  T + GL        
Sbjct: 426 VYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTV--------TFNTFIKGLCCS----- 472

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
               G ++ AI  F  + ++      +    ++D +++ N     L    E+ + G   +
Sbjct: 473 ----GRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELN 528

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           +  +N +    C  GK ++A  +  +    G+   A+++NTL   +C    +    +L  
Sbjct: 529 LVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLD 588

Query: 189 VMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +   G   P+V  Y++L+ G+C +  +++A L L +M   G+  N   +  L+ G
Sbjct: 589 KLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRG 644



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +  +   + +  +I    R   V   + +L++M   G+   +  +  VI+ + + G  + 
Sbjct: 73  KAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQ 132

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++   +R  G  P V+ YN L++ +    + +    +   M   G  P+  TYNILL+
Sbjct: 133 ALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLK 192

Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSK 459
             CK+   +   KL    S KG   D   YT+++S  SK
Sbjct: 193 ALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSK 231


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 181/345 (52%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P+V  FN L+  LC+ G  +    V  +    G       + T+++G CK  
Sbjct: 250 EMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEG 309

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L+    +   M   G++P+V  Y+ ++ GLC   R + AE LL EM +     +DV F 
Sbjct: 310 HLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFN 369

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +          +++++M  +G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 370 ILVDFFCQNGLV------YRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLL 423

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G   + +++T ++ G C   + V+AE ++ +M++ G  P+  T+  VI+  CK 
Sbjct: 424 KSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKK 483

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+   A  LL+ M++ G+ P+ I Y
Sbjct: 484 GLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 543

Query: 419 NILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     K G      + FD +Q +  + SD   Y +++S   K
Sbjct: 544 SSIASALSKEGRINRVIQMFDNIQ-DVTIRSDAVLYNAVISSLCK 587



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 165/354 (46%), Gaps = 46/354 (12%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--------------------------- 159
           P+ Y +  ++  LC  G+I DA  V DE  +RG                           
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSA 172

Query: 160 ------LHATAVSF-----NTLINGHC-KAKNLDEGFRLKSVMEGS-GMRPDVYTYSALI 206
                 LH    +      N ++N  C +  ++DE  RL   +  S G  PDV +Y+A++
Sbjct: 173 VRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVL 232

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
            GLC   R    + L+ EM   G  PN V F TLI   C+NG  +         +++ +M
Sbjct: 233 KGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFE------RVHQVLAQM 286

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
             +G  PD   Y  +LDG CKEG LE A +I   M   G++ + V +  ++ G C   + 
Sbjct: 287 VDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERW 346

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            +AE +L EM       DD T+ +++D FC+NG       LL++M   G +P V TY  +
Sbjct: 347 EQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTV 406

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           +NG CK G +  A MLL +M   G  P+ I+Y I+L+G C      D + L S+
Sbjct: 407 INGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQ 460



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 170/339 (50%), Gaps = 9/339 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +++D+G +P + ++  ++  +CKEG ++ A  + D     GL    V +NT++ G C A+
Sbjct: 285 QMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAE 344

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             ++   L + M  +    D  T++ L++  C+   +     LL +M E G  P+ + +T
Sbjct: 345 RWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYT 404

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I+G CK G ID      EA  ++  M   G  P+ I+YTI+L G C       A D+ 
Sbjct: 405 TVINGFCKEGLID------EAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLM 458

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +MI++G   + V F  +I+  C+ G V +A  +L++ML  G  PD  +Y+ VID   K 
Sbjct: 459 SQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKA 518

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G T     LL  M + G  P    Y+++ + L K G++     + D + D+ +  D + Y
Sbjct: 519 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLY 578

Query: 419 NILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           N ++   CK G  +   +F       G + + + YT L+
Sbjct: 579 NAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILI 617



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 176/341 (51%), Gaps = 9/341 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            +G  P V  +N ++  LC   +    Q + +E  + G     V+FNTLI   C+    +
Sbjct: 218 SFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFE 277

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
              ++ + M   G  PD+  Y+ +++G+CKE  L+ A  +L  M   GL PN V + T++
Sbjct: 278 RVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVL 337

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C   R       ++A +++ EM  N    D +T+ IL+D FC+ G +   +++ ++M
Sbjct: 338 KGLCSAER------WEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQM 391

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G   D + +T +I+GFC+ G + EA  +L+ M   G +P+  +YT+V+   C     
Sbjct: 392 LEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERW 451

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                L+ +M   G  P   T+N ++N LCK G ++ A  LL  ML  G  PD I+Y+ +
Sbjct: 452 VDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTV 511

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           ++G  K G  ++  +L +    KG+  +   Y+S+ S  SK
Sbjct: 512 IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSK 552



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 144/281 (51%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++  + G     +++ T+ING CK   +DE   L   M 
Sbjct: 368 FNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMA 427

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G RP+  +Y+ ++ GLC   R  DAE L+ +M E+G +PN V F T+I+  CK G ++
Sbjct: 428 ACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVE 487

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  + AL++   M+ +G+  + +
Sbjct: 488 ------QAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 541

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++ S   + G++    +M   +  V ++ D   Y  VI   CK G T      L  M
Sbjct: 542 IYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYM 601

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S G +P   TY  L+ GL   G +K A  +L  +   G +
Sbjct: 602 VSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 642



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 11/327 (3%)

Query: 133 NVLMHKLCKEGKIKDA--QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           N++++ +C +G   D   +++ D     G     VS+N ++ G C AK       L   M
Sbjct: 192 NLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEM 251

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
              G  P+V T++ LI  LC+    +    +L +M + G TP+  ++ T++DG CK G +
Sbjct: 252 VRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHL 311

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
           ++A       +I+D M + GL P+ + Y  +L G C     E A ++  EM      LD+
Sbjct: 312 EVA------HEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDD 365

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V F  L+  FC+ G V     +L +ML+ G  PD  TYT VI+ FCK G       LLK 
Sbjct: 366 VTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKS 425

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           M + G  P   +Y  ++ GLC   +  +A  L+  M++ G  P+ +T+N ++   CK G 
Sbjct: 426 MAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGL 485

Query: 431 PEDFDKLQSE---KGLVSDYACYTSLV 454
            E   +L  +    G   D   Y++++
Sbjct: 486 VEQAIELLKQMLLNGCSPDLISYSTVI 512



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 40/330 (12%)

Query: 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226
           +N +++G+C+A  L    RL + +    + P+ YTY  ++  LC   R+ DA  +L EM 
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVP---VPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 227 ERGLTPNDVIFTTLIDGHCK---------------------------------NGRIDMA 253
            RG  P   ++  +++  C                                  N   D  
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 254 GDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           G + EA +++ ++ T+ G +PD ++Y  +L G C         D+ +EM++ G   + V 
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  LI   CR G      ++L +M+  G  PD   Y  V+D  CK G  +    +L  M 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           S G  P V  YN ++ GLC   + + A  LL  M D     DD+T+NIL++  C++G   
Sbjct: 323 SYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVY 382

Query: 433 DFDKLQS---EKGLVSDYACYTSLVSKSSK 459
              +L     E G V D   YT++++   K
Sbjct: 383 RVIELLEQMLEHGCVPDVITYTTVINGFCK 412



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 6/278 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +  L    +    ++L++G  P V  +  +++  CKEG I +A M+       G
Sbjct: 371 LVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +S+  ++ G C A+   +   L S M   G  P+  T++ +IN LCK+  ++ A 
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAI 490

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   G +P+ + ++T+IDG  K G+ D      EA ++++ M   G++P+ I Y+
Sbjct: 491 ELLKQMLLNGCSPDLISYSTVIDGLGKAGKTD------EALELLNVMVNKGMSPNTIIYS 544

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +     KEG +   + +   +    I  D V + A+IS  C+ G    A   L  M+  
Sbjct: 545 SIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSS 604

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           G  P+++TYT++I      G  K    +L E+ S G L
Sbjct: 605 GCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 642



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 124/292 (42%), Gaps = 47/292 (16%)

Query: 203 SALINGLCKENRLDDA------------------ELLLHEMCERG-------------LT 231
           SALI  LC   R  +A                    ++   C  G             + 
Sbjct: 53  SALIRSLCAAGRTAEAARALSAAAARGGAGVVAYNAMVSGYCRAGQLASARRLAASVPVP 112

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE--- 288
           PN   +  ++   C  GRI       +A  ++DEM   G  P    Y ++L+  C     
Sbjct: 113 PNAYTYFPVVRALCARGRI------ADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGG 166

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFC-RGGKVVEAERMLREM-LKVGLKPDDA 346
           G   SA+ + +++  RG  LD      +++  C +GG V EA R+LR++    G  PD  
Sbjct: 167 GGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVV 226

Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
           +Y  V+   C          L++EM   G  P V T+N L+  LC++G  +  + +L  M
Sbjct: 227 SYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQM 286

Query: 407 LDLGVVPDDITYNILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLV 454
           +D G  PD   Y  +L+G CK G+     E  D++ S  GL  +  CY +++
Sbjct: 287 VDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPS-YGLKPNVVCYNTVL 337


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 174/337 (51%), Gaps = 14/337 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID   +  L T        + + G  P +  +N++++  CK G+I++A  + ++  +RG
Sbjct: 316 VIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERG 375

Query: 160 LHATAVSFNTLINGHCKAKNLDEG----FRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
           L     S+  L++ +CK  +  +     FR+  +    G + D+ +Y A I+G+     +
Sbjct: 376 LLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEI----GEKSDLVSYGAFIHGVVVAGEI 431

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A ++  +M E+G+ P+  I+  L+ G CK GRI         + ++ EM    + PD 
Sbjct: 432 DVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRI------PAMKLLLSEMLDRNVQPDV 485

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
             +  L+DGF + G+L+ A+ I K +I++G++   V + A+I GFC+ GK+ +A   L E
Sbjct: 486 YVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNE 545

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M  V   PD+ TY+ VID + K  D  +  ++  +M      P V TY +L+NG CK   
Sbjct: 546 MNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKAD 605

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           +  A  +   M    +VP+ +TY  L+ G  K G PE
Sbjct: 606 MIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPE 642



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 191/381 (50%), Gaps = 11/381 (2%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEI 120
             AL++ Y + G LD A+Q F  +R+ +   P       L++ ++++    V L  Y ++
Sbjct: 133 FSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDKM 192

Query: 121 L--DYGYSPSV--YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           L  D G    V  Y  ++++  LC  GKI++ + +      +      V +N +I+G+CK
Sbjct: 193 LQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCK 252

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             +L    R  + ++  G+ P V TY ALING CK    +  + LL EM  RGL  N  +
Sbjct: 253 KGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKV 312

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           F  +ID   K G +       EA +++  M   G  PD  TY I+++  CK G +E A +
Sbjct: 313 FNNVIDAEYKYGLV------TEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADE 366

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + ++  +RG+  +  ++T L+  +C+ G  V+A  ML  + ++G K D  +Y   I    
Sbjct: 367 LLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVV 426

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             G+      + ++M   G  P  + YN LM+GLCK G++    +LL  MLD  V PD  
Sbjct: 427 VAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVY 486

Query: 417 TYNILLEGHCKHGNPEDFDKL 437
            +  L++G  ++G  ++  K+
Sbjct: 487 VFATLIDGFIRNGELDEAIKI 507



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 166/335 (49%), Gaps = 20/335 (5%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++++ G  P   ++N+LM  LCK+G+I   +++  E   R +      F TLI+G  +  
Sbjct: 440 KMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNG 499

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            LDE  ++  V+   G+ P +  Y+A+I G CK  ++ DA   L+EM      P++  ++
Sbjct: 500 ELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYS 559

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+IDG+ K        DM  A K+  +M  +   P+ ITYT L++GFCK+ D+  A  + 
Sbjct: 560 TVIDGYVKQH------DMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVF 613

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID----- 353
             M    +  + V +T L+ GF + GK   A  +   ML  G  P+DAT+  +I+     
Sbjct: 614 SGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTNT 673

Query: 354 ----CFCKNGDTKTGFRLL-----KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404
                  +  D+K   R L       M  DG    +  YN+++  LCKHG +  A +LL 
Sbjct: 674 ATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGTVDTAQLLLT 733

Query: 405 TMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
            ML  G + D + +  LL G C  G  +++  + S
Sbjct: 734 KMLTKGFLIDSVCFTALLHGLCHKGKSKEWRNIIS 768



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 169/373 (45%), Gaps = 53/373 (14%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH---ATAVSFNTLINGHCKAKNLDEG 183
           P+   F+ L+    + G +  A  +F     R +H    T V+ N L+NG  K+  +D  
Sbjct: 128 PTREAFSALILAYAESGSLDRALQLFHTV--REMHNCFPTFVASNLLLNGLVKSGKVDVA 185

Query: 184 FRLKSVM----EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
            +L   M    +G+G   D YT S ++ GLC   ++++   L+     +   P+ V +  
Sbjct: 186 LQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNM 245

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +IDG+CK G      D++ A + ++E+   G+ P   TY  L++GFCK G+ E+   +  
Sbjct: 246 IIDGYCKKG------DLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLT 299

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  RG+ ++   F  +I    + G V EA  MLR M ++G  PD  TY ++I+  CK G
Sbjct: 300 EMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGG 359

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN------------------- 400
             +    LL++ +  G LP   +Y  LM+  CK G    A+                   
Sbjct: 360 RIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYG 419

Query: 401 ----------------MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---K 441
                           M+ + M++ GV PD   YNIL+ G CK G       L SE   +
Sbjct: 420 AFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDR 479

Query: 442 GLVSDYACYTSLV 454
            +  D   + +L+
Sbjct: 480 NVQPDVYVFATLI 492



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 144/289 (49%), Gaps = 11/289 (3%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSAL 205
           + ++V +    + L  T  +F+ LI  + ++ +LD   +L  +V E     P     + L
Sbjct: 113 EIELVLENMKAQHLKPTREAFSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLL 172

Query: 206 INGLCKENRLDDAELLLHEMCER----GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261
           +NGL K  ++D A  L  +M +     G   ++   + ++ G C  G+I+      E R+
Sbjct: 173 LNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIE------EGRR 226

Query: 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321
           ++         P  + Y +++DG+CK+GDL+ A     E+  +G+      + ALI+GFC
Sbjct: 227 LIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFC 286

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
           + G+    +++L EM   GL  +   +  VID   K G       +L+ M   G  P + 
Sbjct: 287 KAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDIT 346

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           TYN ++N  CK G+++ A+ LL+   + G++P+  +Y  L+  +CK G+
Sbjct: 347 TYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGD 395



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 20/331 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID  +R       +  +  I+  G  P +  +N ++   CK GK+ DA    +E     
Sbjct: 491 LIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVH 550

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 +++T+I+G+ K  ++    ++   M     +P+V TY++LING CK+  +  AE
Sbjct: 551 HAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAE 610

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +   M    L PN V +TTL+ G  K      AG  + A  I + M  NG  P+  T+ 
Sbjct: 611 KVFSGMKSFDLVPNVVTYTTLVGGFFK------AGKPERATSIFELMLMNGCLPNDATFH 664

Query: 280 ILLDGF--------------CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
            L++G                KE +    LD    M+  G +    A+ ++I   C+ G 
Sbjct: 665 YLINGLTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGT 724

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           V  A+ +L +ML  G   D   +T ++   C  G +K    ++    +   L     Y+ 
Sbjct: 725 VDTAQLLLTKMLTKGFLIDSVCFTALLHGLCHKGKSKEWRNIISCDLNKIELQTAVKYSL 784

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
            ++     G+L  A+++L T+++     D +
Sbjct: 785 TLDKYLYQGRLSEASVILQTLVEDSKFSDQV 815



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 161/361 (44%), Gaps = 10/361 (2%)

Query: 24  SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83
           +Q  ++L   + KKG   +  L  S +  R       V   L+  ++  G LD+AI+ F+
Sbjct: 450 AQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFK 509

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++ +        G   +I    +    T  L    E+    ++P  Y ++ ++    K+ 
Sbjct: 510 VIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQH 569

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
            +  A  +F +  K       +++ +LING CK  ++    ++ S M+   + P+V TY+
Sbjct: 570 DMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYT 629

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK-- 261
            L+ G  K  + + A  +   M   G  PND  F  LI+G        +  + K++++  
Sbjct: 630 TLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTNTATSPVLIEEKDSKENE 689

Query: 262 ---IVD---EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA 315
              I+D    M  +G +     Y  ++   CK G +++A  +  +M+ +G  +D+V FTA
Sbjct: 690 RSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDSVCFTA 749

Query: 316 LISGFCRGGKVVEAERMLR-EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
           L+ G C  GK  E   ++  ++ K+ L+     Y++ +D +   G       +L+ +  D
Sbjct: 750 LLHGLCHKGKSKEWRNIISCDLNKIELQT-AVKYSLTLDKYLYQGRLSEASVILQTLVED 808

Query: 375 G 375
            
Sbjct: 809 S 809


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 191/389 (49%), Gaps = 51/389 (13%)

Query: 118 LEILD----YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           LE+LD     G  P+V V++ L+   C+ G+ +D   VF++  +RG+    + F  LI+ 
Sbjct: 178 LELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDD 237

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
            CK     +  ++K +M   G+ P+V TY+ LIN LCKE  + +A  L  EM ++G+ P+
Sbjct: 238 LCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPD 297

Query: 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--LNPDKITYTILLDGFCKEGDL 291
            V + TLI G      +    +M EA   ++EM      + PD +T+  ++ G CK G +
Sbjct: 298 VVTYNTLIAG------LSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRM 351

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
             A+ +R+ M +RG   + V +  LI GF R  KV  A  ++ E+   GL+PD  TY+++
Sbjct: 352 TQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSIL 411

Query: 352 IDCF-----------------------------------CKNGDTKTGFRLLKEMRSDGH 376
           I+ F                                   C+ G  +    L  EM  +  
Sbjct: 412 INGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCG 471

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
           L A+  Y+ +++G CK G +K    L+  MLD G+ PD +TY++L+  + K G+ E+ ++
Sbjct: 472 LDAI-AYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAER 530

Query: 437 L---QSEKGLVSDYACYTSLVSKSSKYRQ 462
           +    +  G V D A + SL+   S   Q
Sbjct: 531 VLKQMTASGFVPDVAVFDSLIKGYSAEGQ 559



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 169/334 (50%), Gaps = 11/334 (3%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +  +M  LC   +  +A  +       G+ A  V++ TLI G C A  LD    L
Sbjct: 121 PNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALEL 180

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M GSG++P+V  YS L+ G C+  R  D   +  +M  RG+ P+ ++FT LID  CK
Sbjct: 181 LDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCK 240

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+        +A K+ D M   GL P+ +TY +L++  CKEG +  AL +RKEM  +G+
Sbjct: 241 EGKTG------KAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGV 294

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLK--VGLKPDDATYTMVIDCFCKNGDTKTG 364
             D V +  LI+G     ++ EA   L EM++    ++PD  T+  VI   CK G     
Sbjct: 295 APDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQA 354

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
            ++ + M   G +  + TYN L+ G  +  ++K A  L+D +   G+ PD  TY+IL+ G
Sbjct: 355 VKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILING 414

Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
             K    +  +K      ++G+ ++   Y  L++
Sbjct: 415 FSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLA 448



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 172/349 (49%), Gaps = 34/349 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V +F  L+  LCKEGK   A  V D   +RGL    V++N LIN  CK  ++ E 
Sbjct: 223 GIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREA 282

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE--RGLTPNDVIFTTLI 241
             L+  M+  G+ PDV TY+ LI GL     +D+A   L EM +    + P+ V F ++I
Sbjct: 283 LTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVI 342

Query: 242 DGHCKNGRIDMAGDMKE-----------------------------ARKIVDEMCTNGLN 272
            G CK GR+  A  ++E                             A  ++DE+  +GL 
Sbjct: 343 HGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLE 402

Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
           PD  TY+IL++GF K  +++ A      M +RGI+ +   +  L++  C+ G +  A  +
Sbjct: 403 PDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGL 462

Query: 333 LREMLK-VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
             EM K  GL  D   Y+ +I   CK+GD KT  +L+++M  +G  P   TY+ L+N   
Sbjct: 463 FNEMDKNCGL--DAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYA 520

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           K G L+ A  +L  M   G VPD   ++ L++G+   G  +   KL  E
Sbjct: 521 KLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHE 569



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 18/302 (5%)

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVM------EGSGMRPDVYTYSALINGLCKENRLDD 217
           AVS+NT++   C+ +  D   + +S++           RP+  +Y+ ++ GLC   R  +
Sbjct: 83  AVSYNTVLAALCR-RGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277
           A  LL  M   G+  + V + TLI G C       A ++  A +++DEMC +G+ P+ + 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCD------ASELDAALELLDEMCGSGVQPNVVV 195

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           Y+ LL G+C+ G  +    + ++M +RGI+ D + FT LI   C+ GK  +A ++   M+
Sbjct: 196 YSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMV 255

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLK 397
           + GL+P+  TY ++I+  CK G  +    L KEM   G  P V TYN L+ GL    ++ 
Sbjct: 256 QRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMD 315

Query: 398 NANMLLDTML--DLGVVPDDITYNILLEGHCKHGNPEDFDKLQ---SEKGLVSDYACYTS 452
            A   L+ M+  D  V PD +T+N ++ G CK G      K++   +E+G + +   Y  
Sbjct: 316 EAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNY 375

Query: 453 LV 454
           L+
Sbjct: 376 LI 377



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 11/232 (4%)

Query: 198 DVYTYSALINGLCKE--NRLDDAELLLHEMCERG---LTPNDVIFTTLIDGHCKNGRIDM 252
           D  +Y+ ++  LC+   + L  A  LL +M         PN V +TT++ G C + R   
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTG- 140

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
                EA  ++  M  +G+  D +TY  L+ G C   +L++AL++  EM   G++ + V 
Sbjct: 141 -----EAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVV 195

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           ++ L+ G+CR G+  +  ++  +M + G+KPD   +T +ID  CK G T    ++   M 
Sbjct: 196 YSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMV 255

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
             G  P V TYN L+N LCK G ++ A  L   M D GV PD +TYN L+ G
Sbjct: 256 QRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAG 307



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           D    P V  FN ++H LCK G++  A  V +   +RG     V++N LI G  +   + 
Sbjct: 328 DTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVK 387

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
               L   +  SG+ PD +TYS LING  K   +D AE  L  M +RG+      +  L+
Sbjct: 388 MAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLL 447

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIRKE 300
              C+ G       M+ A  + +EM  N GL  D I Y+ ++ G CK GD+++   + ++
Sbjct: 448 AAMCQQGM------MERAMGLFNEMDKNCGL--DAIAYSTMIHGACKSGDMKTVKQLIQD 499

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M+  G+  D V ++ LI+ + + G + EAER+L++M   G  PD A +  +I  +   G 
Sbjct: 500 MLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQ 559

Query: 361 TKTGFRLLKEMRS 373
           T    +L+ EMR+
Sbjct: 560 TDKVLKLIHEMRA 572



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
           HY  IP     C    M R       +G + E +D         ++ ++H  CK G +K 
Sbjct: 442 HY--IPLLAAMCQQGMMERA------MGLFNE-MDKNCGLDAIAYSTMIHGACKSGDMKT 492

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
            + +  +    GL   AV+++ LIN + K  +L+E  R+   M  SG  PDV  + +LI 
Sbjct: 493 VKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIK 552

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           G   E + D    L+HEM  + +  +  I +T+I
Sbjct: 553 GYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTII 586


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 171/326 (52%), Gaps = 6/326 (1%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G ++E+   G+ P+V  +  +++  CK+G  K    +  E   RGL      +NT+I+  
Sbjct: 241 GLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDAR 300

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
            K  ++ +       M   G +PD+ TY+ LI+G C++ ++ +A+ LL +   +GL PN 
Sbjct: 301 YKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNK 360

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
             +T LI  +CK G  D A +       + EM   G  PD +TY  L+ G    G+++ A
Sbjct: 361 FSYTPLIHAYCKQGGYDRASNW------LIEMTERGHKPDLVTYGALVHGLVVAGEVDVA 414

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L IR++M++RG+  D   +  L+SG C+  K+  A+ +L EML   + PD   Y  ++D 
Sbjct: 415 LTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDG 474

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           F +NG+     +L +     G  P +  YNA++ G CK G +K+A   ++ M    + PD
Sbjct: 475 FIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPD 534

Query: 415 DITYNILLEGHCKHGNPEDFDKLQSE 440
           + TY+ +++G+ K  + +   K+  E
Sbjct: 535 EFTYSTVIDGYVKQHDLDGAQKMFRE 560



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 170/342 (49%), Gaps = 24/342 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           +Y  +  Y Y P V   N L++ L K G+I+ A+             T +    ++ G C
Sbjct: 152 YYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIAR-----------KFTCI----MVKGLC 196

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   L+EG +L     G G  P++  Y+ LI+G CK+  ++ A  L  E+  +G  P   
Sbjct: 197 KEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVE 256

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            +  +I+G CK G      D K   +++ EM + GL  +   Y  ++D   K G +  A+
Sbjct: 257 TYGAIINGFCKKG------DFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 310

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
           +  + MI+ G + D V +  LISG CR GKV EA+++L + L  GL P+  +YT +I  +
Sbjct: 311 ETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 370

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK G        L EM   GH P + TY AL++GL   G++  A  + + ML+ GV PD 
Sbjct: 371 CKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDA 430

Query: 416 ITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
             YNIL+ G CK         L +E   + ++ D   Y +LV
Sbjct: 431 GIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 472



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 156/329 (47%), Gaps = 25/329 (7%)

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS- 188
           + ++ L+  L +     + ++V +      +  T  + + +I  +  +  +++   L   
Sbjct: 95  FAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYF 154

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
           V++     PDV   ++L+N L K  R++ A         R  T        ++ G CK G
Sbjct: 155 VLKTYTYFPDVIACNSLLNMLVKLGRIEIA---------RKFT------CIMVKGLCKEG 199

Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
           +++      E RK++++    G  P+ I Y  L+DG+CK+GD+E A  +  E+  +G   
Sbjct: 200 KLE------EGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLP 253

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
               + A+I+GFC+ G     +R+L EM   GL  +   Y  +ID   K+G        +
Sbjct: 254 TVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETI 313

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           + M   G  P + TYN L++G C+ G++  A+ LL+  L  G++P+  +Y  L+  +CK 
Sbjct: 314 EGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQ 373

Query: 429 GN---PEDFDKLQSEKGLVSDYACYTSLV 454
           G      ++    +E+G   D   Y +LV
Sbjct: 374 GGYDRASNWLIEMTERGHKPDLVTYGALV 402



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 100 LIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158
           L+D  +R  NL      F L I + G +P +  +N ++   CK G +KDA    +   KR
Sbjct: 471 LVDGFIRNGNLDEARKLFELTI-EKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKR 529

Query: 159 GLHATAVSFNTLINGHCKAKNLD-------EGFRLK---SVMEG-SGMRPDVYTYSALIN 207
            L     +++T+I+G+ K  +LD       E  ++K   +VM+G  G+   + +  A  N
Sbjct: 530 HLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVMDGLQGLLLIIPSLFAFAN 589

Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID---GHCKNG 248
             C E    +   +L +   +G +   VI  T+ +    H K G
Sbjct: 590 MECSELHCINYSSILDQYLPQGTSEASVILQTMFEECQSHSKVG 633


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 160/322 (49%), Gaps = 6/322 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G +P   +++V++   C+ G  + A  V ++   RG      + N ++N  C   
Sbjct: 147 EMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQG 206

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           ++D+   L   +   G  PDV +Y+A++ GLC   R    + L+ EM      PN V F 
Sbjct: 207 SVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFN 266

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI   C+NG  +         +++ +M  +G  PD   Y  ++DG CKEG L+ A +I 
Sbjct: 267 TLISYLCRNGLFE------RVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEIL 320

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M   G++ + V +  L+ G C   +  E E +L EM       DD T+ +++D FC+N
Sbjct: 321 NRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQN 380

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G       LL++M   G +P V TY  ++NG CK G +  A MLL +M   G  P+ I+Y
Sbjct: 381 GLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY 440

Query: 419 NILLEGHCKHGNPEDFDKLQSE 440
            I+L+G C      D + L S+
Sbjct: 441 TIVLKGLCSAERWVDAEDLMSQ 462



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 183/345 (53%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++     P++  FN L+  LC+ G  +    V  +  + G       + T+I+G CK  
Sbjct: 252 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEG 311

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L     + + M   G++P+V  Y+ L+ GLC   R ++ E LL EM ++    +DV F 
Sbjct: 312 HLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M  +G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 372 ILVDFFCQNGLVD------RVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLL 425

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           K M   G + + +++T ++ G C   + V+AE ++ +M++ G   +  T+  +I+  CK 
Sbjct: 426 KSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKK 485

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G+   A  LL+ M++ G+ P+ I Y
Sbjct: 486 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 545

Query: 419 NILLEGHCKHGN----PEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +     + G      + FD +Q +  + SD   Y +++S   K
Sbjct: 546 SSIASALSREGRINKVIQMFDNIQ-DTTIRSDAVLYNAVISSLCK 589



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 168/339 (49%), Gaps = 9/339 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++ ++G +P + ++  ++  +CKEG +K A  + +     GL    V +NTL+ G C A+
Sbjct: 287 QMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 346

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E   L + M       D  T++ L++  C+   +D    LL +M   G  P+ + +T
Sbjct: 347 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYT 406

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           T+I+G CK G ID      EA  ++  M   G  P+ I+YTI+L G C       A D+ 
Sbjct: 407 TVINGFCKEGLID------EAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLM 460

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            +MI++G  L+ + F  LI+  C+ G V +A  +L++ML  G  PD  +Y+ VID   K 
Sbjct: 461 SQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 520

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G T     LL  M + G  P    Y+++ + L + G++     + D + D  +  D + Y
Sbjct: 521 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLY 580

Query: 419 NILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
           N ++   CK G  E   +F       G V + + YT L+
Sbjct: 581 NAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 619



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 174/344 (50%), Gaps = 9/344 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           ++  +G  P V  +N ++  LC   +    Q + +E  +       V+FNTLI+  C+  
Sbjct: 217 DLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNG 276

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +    + + M   G  PD+  Y+ +I+G+CKE  L  A  +L+ M   GL PN V + 
Sbjct: 277 LFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYN 336

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TL+ G C   R       +E  +++ EM       D +T+ IL+D FC+ G ++  +++ 
Sbjct: 337 TLLKGLCSAER------WEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELL 390

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M+  G   D + +T +I+GFC+ G + EA  +L+ M   G KP+  +YT+V+   C  
Sbjct: 391 EQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSA 450

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                   L+ +M   G      T+N L+N LCK G ++ A  LL  ML  G  PD I+Y
Sbjct: 451 ERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 510

Query: 419 NILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSSK 459
           + +++G  K G  ++  +L +    KG+  +   Y+S+ S  S+
Sbjct: 511 STVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSR 554



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 156/325 (48%), Gaps = 9/325 (2%)

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
           N++++ +C +G +  A  +  +    G     VS+N ++ G C AK       L   M  
Sbjct: 196 NLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
               P++ T++ LI+ LC+    +    +L +M E G TP+  ++ T+IDG CK G    
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGH--- 312

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
              +K A +I++ M + GL P+ + Y  LL G C     E   ++  EM  +   LD+V 
Sbjct: 313 ---LKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 369

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           F  L+  FC+ G V     +L +ML  G  PD  TYT VI+ FCK G       LLK M 
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           + G  P   +Y  ++ GLC   +  +A  L+  M+  G   + IT+N L+   CK G  E
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489

Query: 433 DFDKLQSE---KGLVSDYACYTSLV 454
              +L  +    G   D   Y++++
Sbjct: 490 QAIELLKQMLVNGCSPDLISYSTVI 514



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 143/281 (50%), Gaps = 6/281 (2%)

Query: 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
           FN+L+   C+ G +     + ++    G     +++ T+ING CK   +DE   L   M 
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251
             G +P+  +Y+ ++ GLC   R  DAE L+ +M ++G   N + F TLI+  CK G ++
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                 +A +++ +M  NG +PD I+Y+ ++DG  K G  + AL++   M+ +G+  + +
Sbjct: 490 ------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 543

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            ++++ S   R G++ +  +M   +    ++ D   Y  VI   CK G+T+     L  M
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 603

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            S G +P   TY  L+ GL   G +K A  +L  +   G +
Sbjct: 604 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 134/278 (48%), Gaps = 6/278 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+D   +  L    +    ++L +G  P V  +  +++  CKEG I +A M+       G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                +S+  ++ G C A+   +   L S M   G   +  T++ LIN LCK+  ++ A 
Sbjct: 433 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAI 492

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL +M   G +P+ + ++T+IDG  K G+ D      EA ++++ M   G++P+ I Y+
Sbjct: 493 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTD------EALELLNVMVNKGMSPNTIIYS 546

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            +     +EG +   + +   +    I  D V + A+IS  C+ G+   A   L  M+  
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
           G  P+++TYT++I      G  K    +L E+ S G L
Sbjct: 607 GCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 126/271 (46%), Gaps = 38/271 (14%)

Query: 202 YSALING--------------------------------LCKENRLDDAELLLHEMCERG 229
           Y+A++ G                                LC   R+ DA  +L EM  RG
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRG 152

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             P   ++  +++  C+       G  + A ++++++   G   D     ++L+  C +G
Sbjct: 153 CAPIPPMYHVILEAACR------GGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQG 206

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            ++ AL + +++   G E D V++ A++ G C   +    + ++ EM+++   P+  T+ 
Sbjct: 207 SVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFN 266

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I   C+NG  +    +L +M   G  P +  Y  +++G+CK G LK A+ +L+ M   
Sbjct: 267 TLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSY 326

Query: 410 GVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           G+ P+ + YN LL+G C     E+ ++L +E
Sbjct: 327 GLKPNVVCYNTLLKGLCSAERWEETEELLAE 357



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 12/221 (5%)

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +  ++ G+C+      AG ++ AR++   +    + P+  TY  ++   C  G +  AL 
Sbjct: 93  YNAMVAGYCR------AGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALA 143

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  EM +RG       +  ++   CRGG    A R+L ++   G   D     +V++  C
Sbjct: 144 VLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAIC 203

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
             G       LL+++ S G  P V +YNA++ GLC   +      L++ M+ +   P+ +
Sbjct: 204 DQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 263

Query: 417 TYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           T+N L+   C++G  E   ++    +E G   D   Y +++
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATII 304


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 187/397 (47%), Gaps = 10/397 (2%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           L AL+  Y D G L  A      LR+ Y  +P    C  L+  ++           Y E+
Sbjct: 346 LGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEM 405

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L        Y   VL+  LC EG++++   + +     G     V +N LI+G+C+  ++
Sbjct: 406 LGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDM 465

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
             G  L   ME  G  P + TY +LIN L K+  L+    L  EM +RGL+PN  I+ ++
Sbjct: 466 GRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSV 525

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ID  CK           +A  I+ +M  +G +PD IT+  L+ G C EG +  A    +E
Sbjct: 526 IDALCK------CWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLRE 579

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
            I+R +  + +++T LI GFC  G+++ A  +L EM+  G  PD  T+  +I      G 
Sbjct: 580 AIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGK 639

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 + ++M      P V  YN L++GLCK   L  A  +L+ ML+  V PD+  Y  
Sbjct: 640 VSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYAT 699

Query: 421 LLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
           L++G  +  N  D  K+      KG+  D     +++
Sbjct: 700 LIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMI 736



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+   G+ P++  +  L++ L K+G ++    +F E  KRGL      +N++I+  CK  
Sbjct: 474 EMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCW 533

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +  +   +   M  SG  PD+ T++ LI GLC E  +  AE  L E   R L PN + +T
Sbjct: 534 SATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYT 593

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G C      M G++  A  ++ EM   G  PD +T+  L+ G    G +  AL +R
Sbjct: 594 PLIHGFC------MRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVR 647

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           ++M +R +  D   +  LISG C+   +  A+ +L EML+  ++PD+  Y  +ID F ++
Sbjct: 648 EKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRS 707

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
            +     ++ + M   G  P + + NA++ G C+ G +  A + +  M
Sbjct: 708 ENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNM 755



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 106/266 (39%), Gaps = 33/266 (12%)

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE----------------------- 258
           L  M   G  P       L+  +   G +  A DM E                       
Sbjct: 331 LQSMSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLV 390

Query: 259 -------ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
                  ARK+ DEM       D  +  +L+ G C EG +E  L + +     G     V
Sbjct: 391 EQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVV 450

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            +  LI G+CR G +     +L EM   G  P   TY  +I+C  K GD +    L  EM
Sbjct: 451 FYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEM 510

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN- 430
           R  G  P V+ YN++++ LCK      A ++L  M   G  PD IT+N L+ G C  G+ 
Sbjct: 511 RKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHV 570

Query: 431 --PEDFDKLQSEKGLVSDYACYTSLV 454
              E F +    + L  +   YT L+
Sbjct: 571 RKAEHFLREAIRRELNPNQLSYTPLI 596



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 69/136 (50%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           +E++  G++P V  F  L+H L   GK+ +A +V ++  +R +      +N LI+G CK 
Sbjct: 613 MEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKK 672

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
             L     +   M    ++PD + Y+ LI+G  +   L DA  +   M  +G+ P+ V  
Sbjct: 673 HMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSC 732

Query: 238 TTLIDGHCKNGRIDMA 253
             +I G+C+ G +  A
Sbjct: 733 NAMIKGYCQFGMMSEA 748


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 182/384 (47%), Gaps = 29/384 (7%)

Query: 77  DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136
           DA++ F  +R       A     L+  + ++ +       + ++   G + + +V+N ++
Sbjct: 128 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 187

Query: 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196
           H   K G    A+ +       G+     SFNT+I  +C+     E   ++  ME  G++
Sbjct: 188 HVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVK 247

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA--- 253
            DV T+++LI+GLCKE R+ +A  LL EM   G+ P+ V +TTL+DG+C+ G ++ A   
Sbjct: 248 ADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKL 307

Query: 254 --------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
                                     G MKE   +++EM    +  D +T   L++ +CK
Sbjct: 308 RGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCK 367

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            GD+ SAL +++ M++ G++LD   + AL+ GFC+  ++ EA+  L EM+  G  P+ + 
Sbjct: 368 RGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSV 427

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
            + ++D  C   +      +  E+   G  P    Y +L+  LCK G +  A  + + M 
Sbjct: 428 LSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQ 487

Query: 408 DLGVVPDDITYNILLEGHCKHGNP 431
             G+  D + Y  L   +   G P
Sbjct: 488 GKGLEADCLVYATLACAYLTAGKP 511



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 9/276 (3%)

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           +  R+   M    + PD +  SAL+  L K      A  +  +M   G+  N  ++  ++
Sbjct: 128 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 187

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
               K      AGD   A  ++  M   G+  D+ ++  ++  +C++G    A+ +R+ M
Sbjct: 188 HVCLK------AGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERM 241

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
             +G++ D V + +LI G C+  +V EA ++LREM   G+ PD  TYT ++D +C+ GD 
Sbjct: 242 ENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDL 301

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   +L  EM + G LP V TYNA++  LC+ G++K  N+LL+ M +  V  D +T N L
Sbjct: 302 EEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTL 361

Query: 422 LEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLV 454
           +  +CK G+     K++    E GL  D   Y +LV
Sbjct: 362 INAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALV 397



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 157/346 (45%), Gaps = 46/346 (13%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
           + G    V  +N L+H LCKE ++K+A  +  E    G+    V++ TL++G+C+A +L+
Sbjct: 243 NQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLE 302

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           E  +L+  ME  GM P V TY+A++  LC++ ++ +  +LL+EM ER +  + V   TLI
Sbjct: 303 EAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLI 362

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA------- 294
           + +CK G      DM  A K+   M  +GL  D+ TY  L+ GFCK  +L+ A       
Sbjct: 363 NAYCKRG------DMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEM 416

Query: 295 ----------------------------LDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
                                       L I  E++KRG   D   + +LI   C+ G +
Sbjct: 417 MGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFI 476

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
             A  +  EM   GL+ D   Y  +   +   G       +L EM         + YN +
Sbjct: 477 DLAGNVFNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQLYITPQIYNCM 536

Query: 387 MNGLC-KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431
                 + G L   NML    ++ G++   + Y ++ +   K  NP
Sbjct: 537 CTSYADEKGSL---NMLWVHAIERGLITKSV-YKVMHQARMKSSNP 578


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 162/347 (46%), Gaps = 29/347 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            +LE++D G  P+V  +  ++  LCK   +  A+ VF +   +G+     ++N LI+G+ 
Sbjct: 225 LFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYL 284

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
                 E  R+   M   G++PD YTY +L+N LC   R  +A  L   M  +G+ PN  
Sbjct: 285 SIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVA 344

Query: 236 IFTTLIDGHCKNGRIDMAGDM-----------------------------KEARKIVDEM 266
           I+  LI G+   G +    D+                              EA  I ++M
Sbjct: 345 IYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKM 404

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              GL+PD + Y  L+D  CK G ++ A+    +M+  G+  +   F +L+ G C   K 
Sbjct: 405 KQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKW 464

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            +A+    EML  G++PD   +  ++   C  G      RL+  M   G  P V +Y  L
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTL 524

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433
           + G C  G++  A   LD ML +G+ PD+ TYN LL G+C+ G  +D
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDD 571



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 207/434 (47%), Gaps = 27/434 (6%)

Query: 8   HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMI 67
           + Y +++++L  +    +AR L   ++ +KG+  + +++  ++    T      +  L+ 
Sbjct: 309 YTYGSLLNYLCNNGRCREARFLFDSMI-RKGIKPNVAIYGILIHGYATKGALSEMHDLLN 367

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRI--PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125
           + V+ G   D          H F I   A   + +ID  M           + ++   G 
Sbjct: 368 LMVENGLSPD---------HHIFNIIFTAYAKKAMIDEAMH---------IFNKMKQQGL 409

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           SP V  +  L+  LCK G++ DA + F++    G+      FN+L+ G C     ++   
Sbjct: 410 SPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKE 469

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
               M   G+RPDV  ++ ++  LC + ++  A+ L+  M   G  P  + +TTLI GHC
Sbjct: 470 FYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHC 529

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
             GRID      EA K +D M + GL PD+ TY  LL G+C+ G ++ A  + +EM++ G
Sbjct: 530 LVGRID------EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I    V ++ ++ G     +  EA+ +   M+  G + +   Y ++++   KN      F
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAF 643

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425
           +L + + S      + T+N ++  L K G+ ++A  L  T+   G+VPD  TY ++ E  
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENL 703

Query: 426 CKHGNPEDFDKLQS 439
            + G  E+FD L S
Sbjct: 704 IEEGYLEEFDDLFS 717



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 192/390 (49%), Gaps = 24/390 (6%)

Query: 91  RIPARGCRCL-IDRMMRTNLPTVTLGF------YLEILDYGYSPSVYVFNVLMHKLCK-- 141
           R+ A   RCL ++R++ +   + +LG       +  +L +    SV  FN L+  + +  
Sbjct: 4   RVSAVSNRCLELERVIGSRARSGSLGLDDALKLFDGLLTHARPASVIAFNHLLTAVSRVS 63

Query: 142 --EGKIKDAQMVFDEFGKRGLHAT------AVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193
                  ++++V   F +     T        +++ LI   C+   L+ GF    ++  S
Sbjct: 64  GRRSSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKS 123

Query: 194 GMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
           G R +    + L+ GLC   RL +A ++L+  M E G TP+ V + TL+ G C   R   
Sbjct: 124 GWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKR--- 180

Query: 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312
           A +  E   ++ +       P+ ++Y I+++GF  EG ++ A ++  EM+ RGI+ + V 
Sbjct: 181 AEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVT 240

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +T +I G C+   V  AE + ++M+  G+KPD+ TY  +I  +   G  K   R+L+EM 
Sbjct: 241 YTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMS 300

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG--- 429
           + G  P   TY +L+N LC +G+ + A  L D+M+  G+ P+   Y IL+ G+   G   
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALS 360

Query: 430 NPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
              D   L  E GL  D+  +  + +  +K
Sbjct: 361 EMHDLLNLMVENGLSPDHHIFNIIFTAYAK 390



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 180/419 (42%), Gaps = 38/419 (9%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIV------------------SKKGMGSSASLFASILE 51
           Y  ++H        S+  DLL+L+V                  +KK M   A    + ++
Sbjct: 346 YGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK 405

Query: 52  TRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH-------YFRIPARGCRCLIDRM 104
            +G     +   AL+     LG +DDA+  F  +           F     G  C +D+ 
Sbjct: 406 QQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGL-CTVDKW 464

Query: 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164
            +         FY E+L+ G  P V  FN ++  LC +G++  AQ + D   + G     
Sbjct: 465 EKAK------EFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGV 518

Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224
           +S+ TLI GHC    +DE  +   VM   G++PD +TY+ L++G C+  R+DDA  +  E
Sbjct: 519 ISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFRE 578

Query: 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284
           M   G+TP  V ++T++ G     R        EA+++   M T+G   +   Y I+L+G
Sbjct: 579 MLRNGITPGVVTYSTILHGLFTTRR------FSEAKELYLNMITSGKQWNIWIYNIILNG 632

Query: 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344
             K   ++ A  + + +  +  +L+   F  +I    + G+  +A  +   +   GL PD
Sbjct: 633 LSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPD 692

Query: 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403
             TY ++ +   + G  +    L   M   G  P     NAL+  L   G +  A   L
Sbjct: 693 VFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYL 751


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 173/341 (50%), Gaps = 25/341 (7%)

Query: 108 NLPTVTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           N   + L F L  E+   G    VY + +++   CK G I+ A+  F+E  + G     V
Sbjct: 495 NASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVV 554

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++  LI+ + KAK +     L   M   G  P++ TYSALI+G CK  +++ A  +   M
Sbjct: 555 TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERM 614

Query: 226 C-----------------ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268
           C                 +    PN VI+  L+DG CK  R++      EARK++D M  
Sbjct: 615 CGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVE------EARKLLDAMSM 668

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            G  P++I Y  L+DG CK G L+ A +++ EM + G       +++LI  + +  +   
Sbjct: 669 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDL 728

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           A ++L +ML+    P+   YT +ID  CK G T   ++L++ M   G  P V TY A+++
Sbjct: 729 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 788

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
           G  + G+++    LL+ M   GV P+ +TY +L++  CK+G
Sbjct: 789 GFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 829



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 171/346 (49%), Gaps = 23/346 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           ++D   +  L      ++ E+ + G +P+V  +  L+H   K  K+  A  +F+     G
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-----------------GMRPDVYTY 202
                V+++ LI+GHCKA  +++  ++   M GS                   RP+V  Y
Sbjct: 584 CLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIY 643

Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
            AL++G CK +R+++A  LL  M   G  PN +++  LIDG CK G++D      EA+++
Sbjct: 644 GALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD------EAQEV 697

Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
             EM  +G      TY+ L+D + K    + A  +  +M++     + V +T +I G C+
Sbjct: 698 KAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 757

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            GK  EA ++++ M + G +P+  TYT +ID F + G  +T   LL+ M S G  P   T
Sbjct: 758 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVT 817

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           Y  L++  CK+G L  A+ LL+ M           Y  ++EG  K 
Sbjct: 818 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKE 863



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 196/433 (45%), Gaps = 64/433 (14%)

Query: 29  LLHLIVSKKGMGSSASLFASILETRGTHLPGLV-LDALMIVYVDLGFLDDAIQCFRLLRK 87
           L+H  +  K +  +  LF ++L + G  LP +V   AL+  +   G ++ A Q F     
Sbjct: 559 LIHAYLKAKKVSYANELFETML-SEGC-LPNIVTYSALIDGHCKAGQMEKACQIF----- 611

Query: 88  HYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146
                         +RM  + ++P V + F     D    P+V ++  L+   CK  +++
Sbjct: 612 --------------ERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVE 657

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           +A+ + D     G     + ++ LI+G CK   LDE   +K+ M   G    +YTYS+LI
Sbjct: 658 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLI 717

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +   K  R D A  +L +M E    PN VI+T +IDG CK G+ D      EA K++  M
Sbjct: 718 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD------EAYKLMQMM 771

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
              G  P+ +TYT ++DGF + G +E+ L++ + M  +G+  + V +  LI   C+ G +
Sbjct: 772 EEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 831

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKN-----------GDTKTG-----FRLL-- 368
             A  +L EM +       A Y  VI+ F K            G   T      +RLL  
Sbjct: 832 DVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVD 891

Query: 369 ---KEMRSDGHLPAVE--------------TYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
              K  R +  L  +E              TYN+L+  LC   ++  A  L   M   GV
Sbjct: 892 NLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGV 951

Query: 412 VPDDITYNILLEG 424
           +P+  T+  L++G
Sbjct: 952 IPEMQTFCSLIKG 964



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 175/415 (42%), Gaps = 50/415 (12%)

Query: 59  GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
           G  L+ L+  Y   G    A++    L+   FR       CLI   ++ +        + 
Sbjct: 200 GEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHR 259

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+         +      + LCK GK ++A  + +           V +  LI+G C+A 
Sbjct: 260 EMSLANLRMDGFTLRCYAYSLCKVGKWREALTLME---TENFVPDTVFYTKLISGLCEAS 316

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +E     + M  +   P+V TYS L+ G   + +L   + +L+ M   G  P+  IF 
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD------LE 292
           +L+  +C       +GD   A K++ +M   G  P  + Y IL+   C + D      LE
Sbjct: 377 SLVHAYCT------SGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLE 430

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY---- 348
            A     EM+  G+ L+ +  ++     C  GK  +A  ++REM+  G  PD +TY    
Sbjct: 431 LAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 349 -------------------------------TMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377
                                          T+++D FCK G  +   +   EMR  G  
Sbjct: 491 GYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
           P V TY AL++   K  ++  AN L +TML  G +P+ +TY+ L++GHCK G  E
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQME 605



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 41/316 (12%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+  V++ L+  LCK GK+ +AQ V  E  + G  AT  ++++LI+ + K K  D  
Sbjct: 670 GCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLA 729

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            ++ S M  +   P+V  Y+ +I+GLCK  + D+A  L+  M E+G  PN V +T +IDG
Sbjct: 730 SKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDG 789

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
               GRI   G ++   ++++ M + G+ P+ +TY +L+D  CK G L+ A ++ +EM +
Sbjct: 790 F---GRI---GKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 843

Query: 304 RGIELDNVAFTALISGF---------------------------------CRGGKVVEAE 330
                    +  +I GF                                  +  ++  A 
Sbjct: 844 THWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMAL 903

Query: 331 RMLREM--LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
           R+L E+      L    +TY  +I+  C        FRL  EM   G +P ++T+ +L+ 
Sbjct: 904 RLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIK 963

Query: 389 GLCKHGQLKNANMLLD 404
           GL ++ ++  A +LLD
Sbjct: 964 GLFRNSKISEALLLLD 979



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 158/354 (44%), Gaps = 32/354 (9%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  ++ L+     + ++   + V +     G + +   FN+L++ +C + +    ++L
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKE------NRLDDAELLLHEMCERGLTPNDVIFTTL 240
              M   G  P    Y+ LI  +C +      + L+ AE    EM   G+  N +  ++ 
Sbjct: 395 LKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSF 454

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
               C       AG  ++A  ++ EM   G  PD  TY+ +L   C    +E A  + +E
Sbjct: 455 TRCLCS------AGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEE 508

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           M + G+  D   +T ++  FC+ G + +A +   EM +VG  P+  TYT +I  + K   
Sbjct: 509 MKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKK 568

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD------ 414
                 L + M S+G LP + TY+AL++G CK GQ++ A  + + M     VPD      
Sbjct: 569 VSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFK 628

Query: 415 -----------DITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLV 454
                       + Y  LL+G CK    E+  KL    S +G   +   Y +L+
Sbjct: 629 QYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALI 682



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 139/321 (43%), Gaps = 10/321 (3%)

Query: 50  LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
           +   G     +V DAL+     +G LD+A +    + +H F         LIDR  +   
Sbjct: 666 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKR 725

Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
             +      ++L+   +P+V ++  ++  LCK GK  +A  +     ++G     V++  
Sbjct: 726 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 785

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+G  +   ++    L   M   G+ P+  TY  LI+  CK   LD A  LL EM +  
Sbjct: 786 MIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTH 845

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
              +   +  +I+G  K        +  E+  ++DE+  +   P    Y +L+D   K  
Sbjct: 846 WPTHAAGYRKVIEGFNK--------EFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQ 897

Query: 290 DLESALDIRKEMIKRGIELDNVA--FTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            LE AL + +E+      L + +  + +LI   C   KV +A R+  EM K G+ P+  T
Sbjct: 898 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQT 957

Query: 348 YTMVIDCFCKNGDTKTGFRLL 368
           +  +I    +N        LL
Sbjct: 958 FCSLIKGLFRNSKISEALLLL 978



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 139/355 (39%), Gaps = 19/355 (5%)

Query: 110 PTVTLGFYLEI-LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
           P+  + F++      GY  +  V+N L+  + ++   K  + +  +             N
Sbjct: 145 PSAVISFFVWAGRQIGYKHTSPVYNALVDLIVRDDDEKVPEELLQQIRDDDKEVFGEFLN 204

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L+  +C++ +          ++    RP   TY+ LI    K + LD A L+  EM   
Sbjct: 205 VLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLA 264

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
            L  +           CK G+          R+ +  M T    PD + YT L+ G C+ 
Sbjct: 265 NLRMDGFTLRCYAYSLCKVGK---------WREALTLMETENFVPDTVFYTKLISGLCEA 315

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
              E A+D    M       + V ++ L+ G     ++   +R+L  M+  G  P    +
Sbjct: 316 SLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIF 375

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ------LKNANML 402
             ++  +C +GD    ++LLK+M   GH P    YN L+  +C          L+ A   
Sbjct: 376 NSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKA 435

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
              ML  GVV + I  +      C  G  E    +  E   +G + D + Y+ ++
Sbjct: 436 YSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 159/307 (51%), Gaps = 9/307 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G  PSV  + VL+  +CK     +A  V DE   +G     V++N +ING C+   
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           +D+   + + +   G +PD+ +Y+ ++ GLC   R DD ++L  EM ++   PN+V F  
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           L+   C+ G ++       A +++ +M  +G  P+     I+++  CK+G ++ A D   
Sbjct: 298 LVRFFCRGGMVE------RAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLN 351

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            M   G   D +++T ++ G CR G+   A+ +L EM++    P++ T+   I   C+ G
Sbjct: 352 NMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKG 411

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
             +   +L++ M   G    + TYNAL++G C  G++ +A   L+   +L   P+ ITY 
Sbjct: 412 LIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSA---LELFNNLPCEPNTITYT 468

Query: 420 ILLEGHC 426
            LL G C
Sbjct: 469 TLLTGLC 475



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 197/428 (46%), Gaps = 28/428 (6%)

Query: 3   FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVL 62
           F+  + +Y+T++  L A +     + L   +V KK + +  +                  
Sbjct: 253 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF----------------- 295

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           D L+  +   G ++ AIQ  + + +H        C  +I+ + +         F   +  
Sbjct: 296 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 355

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
           YG +P    +  ++  LC+ G+ + A+ +  E  ++      V+FNT I   C+   +++
Sbjct: 356 YGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 415

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA-ELLLHEMCERGLTPNDVIFTTLI 241
             +L  +M   G    + TY+AL++G C + R+D A EL  +  CE    PN + +TTL+
Sbjct: 416 AIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE----PNTITYTTLL 471

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
            G C   R+D A ++      + EM       + +T+ +L+  FC++G +E A+++  +M
Sbjct: 472 TGLCHAERLDAAAEL------LAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQM 525

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
           ++ G   + + F  L+ G  +     EA  +L  ++  G+  D  TY+ V+D   +   T
Sbjct: 526 MEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRT 585

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
           +   ++L  ++  G  P V  YN ++  LCK  +   A      M+  G +P++ TY IL
Sbjct: 586 EEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIIL 645

Query: 422 LEGHCKHG 429
           +EG    G
Sbjct: 646 IEGLAHEG 653



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           +RG   + V++  L+   CK+    E   +   M   G  P++ TY+ +ING+C+E R+D
Sbjct: 180 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 239

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA-RKIVDEMCTNGLNPDK 275
           DA+ +L+ +   G  P+ V +TT++ G C   R D   D+K    ++VD+ C     P++
Sbjct: 240 DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWD---DVKVLFAEMVDKKCV----PNE 292

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
           +T+ +L+  FC+ G +E A+ + ++M + G   +      +I+  C+ G+V +A   L  
Sbjct: 293 VTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNN 352

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   G  PD  +YT V+   C+ G  +    LL EM      P   T+N  +  LC+ G 
Sbjct: 353 MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGL 412

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYT 451
           ++ A  L++ M + G     +TYN L+ G C  G      E F+ L  E   ++    YT
Sbjct: 413 IEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTIT----YT 468

Query: 452 SLVS 455
           +L++
Sbjct: 469 TLLT 472



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 169/368 (45%), Gaps = 29/368 (7%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E++D    P+   F++L+   C+ G ++ A  V  +  + G        N +IN  C
Sbjct: 279 LFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAIC 338

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
           K   +D+ +   + M   G  PD  +Y+ ++ GLC+  R + A+ LL EM  +   PN+V
Sbjct: 339 KQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEV 398

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEA-------------RKIVDEMCTNG------------ 270
            F T I   C+ G I+ A  + E                +V   C  G            
Sbjct: 399 TFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL 458

Query: 271 -LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
              P+ ITYT LL G C    L++A ++  EMI++   L+ V F  L+S FC+ G V EA
Sbjct: 459 PCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEA 518

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             ++ +M++ G  P+  T+  ++D   K+ +++    LL  + S G      TY+++++ 
Sbjct: 519 MELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDV 578

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSD 446
           L +  + + A  +L  + D+G+ P    YN +L   CK    +   DF       G + +
Sbjct: 579 LSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPN 638

Query: 447 YACYTSLV 454
            + Y  L+
Sbjct: 639 ESTYIILI 646



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 137/268 (51%), Gaps = 9/268 (3%)

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
           S M   G +P V TY+ L+  +CK +   +A  +L EM  +G TPN V +  +I+G C+ 
Sbjct: 176 STMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCRE 235

Query: 248 GRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
           GR+D      +A++I++ + + G  PD ++YT +L G C     +    +  EM+ +   
Sbjct: 236 GRVD------DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 289

Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367
            + V F  L+  FCRGG V  A ++L++M + G  P+     +VI+  CK G     +  
Sbjct: 290 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 349

Query: 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
           L  M   G  P   +Y  ++ GLC+ G+ ++A  LL  M+     P+++T+N  +   C+
Sbjct: 350 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQ 409

Query: 428 HGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            G  E   KL     L+ +Y C   +V+
Sbjct: 410 KGLIEQAIKLIE---LMPEYGCSVGIVT 434


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 170/329 (51%), Gaps = 31/329 (9%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G + +    N L+H LC+ G +++   V  +  ++GL    +S+NTLI G CK   ++E 
Sbjct: 496 GLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEA 555

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
           F+LK  M     +PD YTY+ L+ GL    ++DD   LLHE  E G  PN   +  L++G
Sbjct: 556 FKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEG 615

Query: 244 HCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPD 274
           +CK  RI+ A                             G++ EA K+ D M + G+ P 
Sbjct: 616 YCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPT 675

Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
             TY+ L+ G C  G ++ A +I +EM   G+  +   +TALI G C+ G++     +L 
Sbjct: 676 CATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILL 735

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           EM   G++P+  TYT++ID +CK G+ K    LL EM  +G  P   TYNAL  G CK  
Sbjct: 736 EMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKER 795

Query: 395 QLKNANMLLDTMLDLGV-VPDDITYNILL 422
           +L    +  D   ++G+ + ++ITYN L+
Sbjct: 796 EL-TVTLQSDHKSNIGLPLEEEITYNTLI 823



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 185/370 (50%), Gaps = 10/370 (2%)

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK-EGKIKDAQMVFDEF 155
           C  +I R+M  +     L    ++L      S  +   L+  LCK EG  +  ++ F   
Sbjct: 433 CSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLA 492

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +GL A  V+ N L++G C+  N++E F +   M   G+  D  +Y+ LI G CK  ++
Sbjct: 493 AVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKI 552

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           ++A  L  EM ++   P+   +  L+ G    G+ID      +  +++ E    G  P+ 
Sbjct: 553 EEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKID------DVHRLLHEAKEYGFVPNV 606

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY +LL+G+CK   +E A+   K +    +EL +V +  LI+ +CR G V EA ++   
Sbjct: 607 YTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDA 666

Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
           M   G+ P  ATY+ +I   C  G       + +EMR++G LP V  Y AL+ G CK GQ
Sbjct: 667 MKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQ 726

Query: 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTS 452
           +     +L  M   G+ P+ ITY I+++G+CK GN ++  +L +E    G+  D   Y +
Sbjct: 727 MDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNA 786

Query: 453 LVSKSSKYRQ 462
           L     K R+
Sbjct: 787 LQKGYCKERE 796



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 177/350 (50%), Gaps = 14/350 (4%)

Query: 95  RGCRCLIDRMMRTNLPTVTLGFYLEILDY---GYSPSVYVFNVLMHKLCKEGKIKDAQMV 151
           + C  L+  +++ N     L    E+ D    G +P V+ F   ++  CK G++ DA  +
Sbjct: 222 KTCNLLLSSLVKAN----ELHKSYEVFDLACQGVAPDVFTFTTAINAFCKGGRVGDAVDL 277

Query: 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
           F +    G+    V++N +I+G  K+   +E  R K  M  S + P V TY  LI+GL K
Sbjct: 278 FCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMK 337

Query: 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
               ++A  +L EM   G  PN+V+F  LIDG+C+       GDM EA ++ DEM   G+
Sbjct: 338 LEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRK------GDMGEALRVRDEMAMKGM 391

Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
            P+ +T+  LL GFC+   +E A  +   ++  G+ ++    + +I         V A +
Sbjct: 392 KPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALK 451

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGL 390
           ++ ++L   ++  D+  T ++   CK         L  ++ +   L A   T NAL++GL
Sbjct: 452 IVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGL 511

Query: 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           C+ G ++    +L  ML+ G++ D I+YN L+ G CK G  E+  KL+ E
Sbjct: 512 CERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEE 561



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 59/253 (23%)

Query: 212 ENRLDDAELLLHEMCE-------------------------------------------- 227
           E RL + +LLLH +C                                             
Sbjct: 180 EQRLGELDLLLHILCSQFKCLGSRCAFDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHK 239

Query: 228 ---------RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY 278
                    +G+ P+   FTT I+  CK GR+  A D+        +M   G+ P+ +TY
Sbjct: 240 SYEVFDLACQGVAPDVFTFTTAINAFCKGGRVGDAVDL------FCKMEGLGVFPNVVTY 293

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
             ++DG  K G  E AL  +  M++  +    V +  LISG  +     EA  +L EM  
Sbjct: 294 NNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYS 353

Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
           +G  P++  +  +ID +C+ GD     R+  EM   G  P   T+N L+ G C+  Q++ 
Sbjct: 354 MGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQ 413

Query: 399 ANMLLDTMLDLGV 411
           A  +L  +L  G+
Sbjct: 414 AEQVLVYILSSGL 426



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           LE+   G  P+   + +++   CK G +K+A+ + +E  + G+    V++N L  G+CK 
Sbjct: 735 LEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKE 794

Query: 178 KNL 180
           + L
Sbjct: 795 REL 797


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 171/313 (54%), Gaps = 15/313 (4%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V LGF+L+ + YG          L++ LCK G+ + A  +      + +   AV +NT+I
Sbjct: 165 VALGFHLDQVSYG---------TLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVI 215

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
           +G  K K++++ F L S M    + PDV TYSALI G     +L DA  L ++M    + 
Sbjct: 216 DGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIK 275

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   F  L+DG CK GR      +K+A+ ++D M    + P+  T+  L+DGFCK+  +
Sbjct: 276 PDVYTFNILVDGFCKEGR------LKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKM 329

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
           +    +   M+K+GI+ + V + +L+ G+C   +V +A+++   M + G+  +  +Y ++
Sbjct: 330 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIM 389

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           I+ FCK        +L  EM     +P V TYN+L++GLCK G++  A  L++ M D G 
Sbjct: 390 INGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQ 449

Query: 412 VPDDITYNILLEG 424
            P+ ITYN +L  
Sbjct: 450 PPNIITYNSILNA 462



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 173/340 (50%), Gaps = 9/340 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           +IL  GY P +   N  +   C +G+I  A    D+    G H   VS+ TLING CK  
Sbjct: 128 KILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVG 187

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                 +L   ++G  ++ +   Y+ +I+G+ K+  ++DA  L  EM  + ++P+ V ++
Sbjct: 188 ETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYS 247

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI G        + G +K+A  + ++M    + PD  T+ IL+DGFCKEG L+ A ++ 
Sbjct: 248 ALIRGFF------IVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVL 301

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M+ + I+ +   F  L+ GFC+  K+ E + +   M+K G+KP+  TY  ++D +C  
Sbjct: 302 DMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLV 361

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
                  ++   M   G    V +YN ++NG CK  ++  A  L   M    ++PD +TY
Sbjct: 362 KQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTY 421

Query: 419 NILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVS 455
           N L++G CK G      +L +E   +G   +   Y S+++
Sbjct: 422 NSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILN 461



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 166/334 (49%), Gaps = 9/334 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P+   FN+L++  C+ G I  A  V  +  K G     ++ NT I G C    + + 
Sbjct: 98  GINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQA 157

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 +   G   D  +Y  LINGLCK      A  LL  +  + +  N V++ T+IDG
Sbjct: 158 LNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDG 217

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
             K+  ++ A D+        EM    ++PD +TY+ L+ GF   G L+ A+D+  +MI 
Sbjct: 218 MSKDKHVNDAFDL------YSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMIL 271

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
             I+ D   F  L+ GFC+ G++ +A+ +L  M+   +KP+ +T+  ++D FCK+   K 
Sbjct: 272 ENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKE 331

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
           G  +   M   G  P V TY +LM+G C   Q+  A  + +TM   GV  +  +YNI++ 
Sbjct: 332 GKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMIN 391

Query: 424 GHCKHGNPEDFDKLQSE---KGLVSDYACYTSLV 454
           G CK    +   KL  E   K ++ D   Y SL+
Sbjct: 392 GFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLI 425



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 179/371 (48%), Gaps = 18/371 (4%)

Query: 37  KGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96
           KG    A  F   L   G HL  +    L+     +G    A+Q  R +     ++ A  
Sbjct: 151 KGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVM 210

Query: 97  CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
              +ID M +          Y E++    SP V  ++ L+      GK+KDA  +F++  
Sbjct: 211 YNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMI 270

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
              +     +FN L++G CK   L +   +  +M    ++P+V T++ L++G CK+ ++ 
Sbjct: 271 LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMK 330

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
           + + +   M ++G+ PN V + +L+DG+C      +   + +A+KI + M   G+  +  
Sbjct: 331 EGKTVFAMMMKQGIKPNVVTYCSLMDGYC------LVKQVNKAKKIFNTMSQRGVTANVH 384

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           +Y I+++GFCK   ++ A+ +  EM  + I  D V + +LI G C+ GK+  A +++ EM
Sbjct: 385 SYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEM 444

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
              G  P+  TY  +++             LL +++  G  P + T   L+ GLC+ G+L
Sbjct: 445 HDRGQPPNIITYNSILNA------------LLTKLKDQGIQPNMHTDTILIKGLCQSGKL 492

Query: 397 KNANMLLDTML 407
           + A  + + +L
Sbjct: 493 EAARKVFEDLL 503



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 35/201 (17%)

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            +M   G+NP+ +T+ IL++ FC+ G +  A  +  +++K G E D +     I GFC  
Sbjct: 92  QQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLK 151

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE------------- 370
           G++ +A     +++ +G   D  +Y  +I+  CK G+T+   +LL+              
Sbjct: 152 GQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMY 211

Query: 371 ------MRSDGHL----------------PAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
                 M  D H+                P V TY+AL+ G    G+LK+A  L + M+ 
Sbjct: 212 NTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMIL 271

Query: 409 LGVVPDDITYNILLEGHCKHG 429
             + PD  T+NIL++G CK G
Sbjct: 272 ENIKPDVYTFNILVDGFCKEG 292



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 66/142 (46%)

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
             D++ A+ +   ++ +   L    F  ++    +         + ++M   G+ P+  T
Sbjct: 46  SNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVT 105

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           + ++I+CFC+ G     F +L ++   G+ P + T N  + G C  GQ+  A    D ++
Sbjct: 106 FNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLV 165

Query: 408 DLGVVPDDITYNILLEGHCKHG 429
            LG   D ++Y  L+ G CK G
Sbjct: 166 ALGFHLDQVSYGTLINGLCKVG 187


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 167/303 (55%), Gaps = 7/303 (2%)

Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
           S +V+N L+++L K GK+ +A  +F E           +FN LI G C+   +++GF L 
Sbjct: 162 SSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELF 221

Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCK 246
           + M+  G  PDV TY+ LI+GLCK N LD A  LL E+  R   +P+ + +T++I G  K
Sbjct: 222 NAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRK 281

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G+++ A  + E      EM  +G+ P  +T+ +L+DGF K G++ +A  + ++M     
Sbjct: 282 LGKLEAASVLFE------EMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSC 335

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V FT+LI G+CR G +    ++   M    + P+  TY+++I+  CK+        
Sbjct: 336 IPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARD 395

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           LL++++     P    YN +++G CK G +  AN+++  M +    PD +T+ IL+ GHC
Sbjct: 396 LLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHC 455

Query: 427 KHG 429
             G
Sbjct: 456 MKG 458



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 200/414 (48%), Gaps = 8/414 (1%)

Query: 28  DLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87
           +LL   + + G+     +    + + G  +   VL  L+  +   G  D A +    ++ 
Sbjct: 97  ELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQG 156

Query: 88  HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
              RI +     L++ +++       +  + E L +   P+ + FN+L+  LC+ G+++ 
Sbjct: 157 EEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEK 216

Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALI 206
              +F+     G     V++NTLI+G CKA  LD    L K V   +   PDV TY+++I
Sbjct: 217 GFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSII 276

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
           +G  K  +L+ A +L  EM   G+ P  V F  LIDG    G+I   G+M  A  + ++M
Sbjct: 277 SGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGF---GKI---GNMVAAEAMHEKM 330

Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
            +    PD +T+T L+DG+C+ GD+   L +   M  R +  +   ++ +I+  C+  ++
Sbjct: 331 ASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRI 390

Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
            EA  +LR++    + P    Y  VID FCK G+      ++ EM      P   T+  L
Sbjct: 391 HEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTIL 450

Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-EDFDKLQS 439
           + G C  G++  A  +   ML +G  PD+IT + L+    K G P E F  +Q+
Sbjct: 451 IIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHIVQT 504



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 154/311 (49%), Gaps = 7/311 (2%)

Query: 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           V   L+    + GK   A+ +  E        ++  +N L+N   K   + E   L    
Sbjct: 130 VLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKEN 189

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
                 P+ +T++ LI GLC+   ++    L + M   G  P+ V + TLI G CK   +
Sbjct: 190 LAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANEL 249

Query: 251 DMAGDM-KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           D A D+ KE +        N  +PD +TYT ++ GF K G LE+A  + +EMI+ GIE  
Sbjct: 250 DRACDLLKEVQS------RNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPT 303

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V F  LI GF + G +V AE M  +M      PD  T+T +ID +C+ GD + G ++  
Sbjct: 304 VVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWD 363

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M++    P + TY+ ++N LCK  ++  A  LL  +    V P    YN +++G CK G
Sbjct: 364 VMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAG 423

Query: 430 NPEDFDKLQSE 440
           N ++ + + +E
Sbjct: 424 NVDEANVIVTE 434



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 10/258 (3%)

Query: 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260
           TY  LI  LC+    D  E+++  M   G   +  +   L+    + G+ D+      A+
Sbjct: 95  TYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDL------AK 148

Query: 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320
           K++ E+           Y  LL+   K G +  A+ + KE +      +   F  LI G 
Sbjct: 149 KLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGL 208

Query: 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL-PA 379
           CR G+V +   +   M   G  PD  TY  +I   CK  +      LLKE++S     P 
Sbjct: 209 CRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPD 268

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN---PEDFDK 436
           V TY ++++G  K G+L+ A++L + M+  G+ P  +T+N+L++G  K GN    E   +
Sbjct: 269 VMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHE 328

Query: 437 LQSEKGLVSDYACYTSLV 454
             +    + D   +TSL+
Sbjct: 329 KMASYSCIPDVVTFTSLI 346



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           +  LI   C+ G     E ++  M   G   D      ++  F + G      +L+ E++
Sbjct: 96  YELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQ 155

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
            +    +   YN L+N L K G++  A  L    L     P+  T+NIL+ G C+ G  E
Sbjct: 156 GEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVE 215

Query: 433 D----FDKLQSEKGLVSDYACYTSLVS 455
                F+ +QS  G + D   Y +L+S
Sbjct: 216 KGFELFNAMQS-FGCLPDVVTYNTLIS 241


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 165/311 (53%), Gaps = 8/311 (2%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L  G++ +VY  N+L+  LC+  +   A  +  E  +  L     S+NT+I G C+ K 
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L++   L + M+GSG    + T+  LI+  CK  ++D+A   L EM   GL  + V++T+
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTS 252

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           LI G C  G +D        + + DE+   G +P  ITY  L+ GFCK G L+ A +I +
Sbjct: 253 LIRGFCDCGELD------RGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
            MI+RG+  +   +T LI G C  GK  EA ++L  M++   +P+  TY ++I+  CK+G
Sbjct: 307 FMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDG 366

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV--PDDIT 417
                  +++ M+     P   TYN L+ GLC  G L  A+ LL  ML       PD I+
Sbjct: 367 LVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVIS 426

Query: 418 YNILLEGHCKH 428
           YN L+ G CK 
Sbjct: 427 YNALIHGLCKE 437



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 170/346 (49%), Gaps = 14/346 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +       +GF  E+   G    + V+  L+   C  G++   + +FDE  +RG
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERG 277

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
               A+++NTLI G CK   L E   +   M   G+RP+VYTY+ LI+GLC   +  +A 
Sbjct: 278 DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEAL 337

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            LL+ M E+   PN V +  +I+  CK+G +       +A +IV+ M      PD ITY 
Sbjct: 338 QLLNLMIEKDEEPNAVTYNIIINKLCKDGLV------ADAVEIVELMKKRRTRPDNITYN 391

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRG--IELDNVAFTALISGFCRGGKVVEA---ERMLR 334
           ILL G C +GDL+ A  +   M+K     + D +++ ALI G C+  ++ +A     +L 
Sbjct: 392 ILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLV 451

Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
           E L  G   D  T  ++++   K GD      L K++     +   +TY A+++G CK G
Sbjct: 452 EKLGAG---DRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTG 508

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            L  A  LL  M    + P    YN LL   CK G+ +   +L  E
Sbjct: 509 MLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEE 554



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 168/338 (49%), Gaps = 6/338 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           L+ +++R+    +   FY ++L+     +    + L+    +  K   A  V     KRG
Sbjct: 78  LMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRG 137

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                 + N L+ G C+     +   L   M  + + PDV++Y+ +I G C+   L+ A 
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            L +EM   G + + V +  LID  CK      AG M EA   + EM   GL  D + YT
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCK------AGKMDEAMGFLKEMKFMGLEADLVVYT 251

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+ GFC  G+L+    +  E+++RG     + +  LI GFC+ G++ EA  +   M++ 
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G++P+  TYT +ID  C  G TK   +LL  M      P   TYN ++N LCK G + +A
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADA 371

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437
             +++ M      PD+ITYNILL G C  G+ ++  KL
Sbjct: 372 VEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKL 409



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 181/373 (48%), Gaps = 9/373 (2%)

Query: 44  SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR 103
           +LF  +LE RG     +  + L+  +  LG L +A + F  + +   R        LID 
Sbjct: 268 ALFDEVLE-RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDG 326

Query: 104 MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163
           +         L     +++    P+   +N++++KLCK+G + DA  + +   KR     
Sbjct: 327 LCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPD 386

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVM--EGSGMRPDVYTYSALINGLCKENRLDDAELL 221
            +++N L+ G C   +LDE  +L  +M  + S   PDV +Y+ALI+GLCKENRL  A  +
Sbjct: 387 NITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDI 446

Query: 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL 281
              + E+    + V    L++   K      AGD+ +A ++  ++  + +  +  TYT +
Sbjct: 447 YDLLVEKLGAGDRVTTNILLNSTLK------AGDVNKAMELWKQISDSKIVRNSDTYTAM 500

Query: 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341
           +DGFCK G L  A  +  +M    ++     +  L+S  C+ G + +A R+  EM +   
Sbjct: 501 IDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNN 560

Query: 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401
            PD  ++ ++ID   K GD K+   LL  M   G  P + TY+ L+N   K G L  A  
Sbjct: 561 FPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAIS 620

Query: 402 LLDTMLDLGVVPD 414
             D M+D G  PD
Sbjct: 621 FFDKMVDSGFEPD 633



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 43/324 (13%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRM-MRTNLPTVTLGFYLEILDYGYS-PSVY 130
           G + DA++   L++K   R        L+  +  + +L   +   YL + D  Y+ P V 
Sbjct: 366 GLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 131 VFNVLMHKLCKEGKIKDAQMVFD-------------------------------EFGKRG 159
            +N L+H LCKE ++  A  ++D                               E  K+ 
Sbjct: 426 SYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 160 LHATAV----SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
             +  V    ++  +I+G CK   L+    L   M  S ++P V+ Y+ L++ LCKE  L
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           D A  L  EM      P+ V F  +IDG  K      AGD+K A  ++  M   GL+PD 
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLK------AGDIKSAESLLVGMSRAGLSPDL 599

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
            TY+ L++ F K G L+ A+    +M+  G E D     +++      G+  +   ++++
Sbjct: 600 FTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKK 659

Query: 336 MLKVGLKPDDATYTMVIDCFCKNG 359
           ++   +  D      V+D  C + 
Sbjct: 660 LVDKDIVLDKELTCTVMDYMCNSS 683



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 19/257 (7%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
           +Y+ ++H L       QA D+  L+V K G G   +                  + L+  
Sbjct: 426 SYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTT-----------------NILLNS 468

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128
            +  G ++ A++ ++ +        +     +ID   +T +  V  G   ++      PS
Sbjct: 469 TLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPS 528

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V+ +N L+  LCKEG +  A  +F+E  +       VSFN +I+G  KA ++     L  
Sbjct: 529 VFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLV 588

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M  +G+ PD++TYS LIN   K   LD+A     +M + G  P+  I  +++      G
Sbjct: 589 GMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQG 648

Query: 249 RIDMAGDMKEARKIVDE 265
             D   ++   +K+VD+
Sbjct: 649 ETDKLTEL--VKKLVDK 663



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 282 LDGFCKEGD--LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           L   C++ +  L++A+ + ++ +  G  L   A   L++   R      A    R+ML+ 
Sbjct: 43  LRSLCEDSNPQLKNAVSVFQQAVDSGSSL-AFAGNNLMAKLVRSRNHELAFSFYRKMLET 101

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
               +  + + +++C+ +   T   F +L  M   G    V  +N L+ GLC++ +   A
Sbjct: 102 DTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKA 161

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
             LL  M    ++PD  +YN ++ G C+    E   +L +E   +    C  SLV+
Sbjct: 162 VSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANE---MKGSGCSWSLVT 214


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 166/316 (52%), Gaps = 15/316 (4%)

Query: 112 VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171
           V LGF+L+ + YG          L+H LCK G+ + A  +      + +   AV +NT+I
Sbjct: 152 VALGFHLDQVSYG---------TLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVI 202

Query: 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231
            G CK K++++ F L S M   G+ P+V TYSALI+G     +L DA  L +++    + 
Sbjct: 203 YGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIK 262

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           P+   F  L+DG CK+ +      MKE + +   M   G+ PD +TY  L+DG+C   ++
Sbjct: 263 PDGYTFNILVDGFCKDRK------MKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEV 316

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351
            +A  I   M + G+  D  ++  LI+GFC+  KV +A  +  EM    + P+  TY  +
Sbjct: 317 NTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSL 376

Query: 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           ID   K+G      +L+ +M   G  P + TYN++++ L K  Q+  A  L+    D G+
Sbjct: 377 IDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGI 436

Query: 412 VPDDITYNILLEGHCK 427
            P   TY IL++G CK
Sbjct: 437 QPSMYTYTILIDGLCK 452



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 183/354 (51%), Gaps = 10/354 (2%)

Query: 75  LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134
           +DDA+  F  L +     PA     ++  ++++      L    ++   G  P+++  N+
Sbjct: 67  VDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNI 126

Query: 135 LMHKLCKEG----KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
           L++  C+ G    +I  A +  D+    G H   VS+ TLI+G CK         L   +
Sbjct: 127 LIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRV 186

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250
           +G  ++ +   Y+ +I G+CK+  ++DA  L  EM  +G++PN V ++ LI G       
Sbjct: 187 DGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF----- 241

Query: 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
            + G +K+A  + +++    + PD  T+ IL+DGFCK+  ++    +   M+K+GI  D 
Sbjct: 242 -VVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDV 300

Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
           V + +L+ G+C   +V  A+ +   M + G+ PD  +Y ++I+ FCK         L  E
Sbjct: 301 VTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE 360

Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           M     +P V TYN+L++GL K G++  A  L+D M D GV P+ +TYN +++ 
Sbjct: 361 MHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDA 414



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 170/375 (45%), Gaps = 19/375 (5%)

Query: 68  VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV---------TLGFYL 118
           V  D  F+    Q F+ L+  +F I        I+ +  ++  T           +  + 
Sbjct: 16  VVPDSHFVPKKFQSFQFLKNTHFLISFLILLTKINFISYSSTSTTFHSNNDVDDAVSLFN 75

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            +L    +P  + FN ++  L K         +  +   RG+     + N LI   C+  
Sbjct: 76  RLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLG 135

Query: 179 ----NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
                + + F     +   G   D  +Y  LI+GLCK      A  LL  +  + +  N 
Sbjct: 136 LIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNA 195

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V++ T+I G CK+  ++ A D+        EM + G++P+ +TY+ L+ GF   G L+ A
Sbjct: 196 VMYNTVIYGMCKDKHVNDAFDL------YSEMVSKGISPNVVTYSALISGFFVVGKLKDA 249

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           +D+  ++I   I+ D   F  L+ GFC+  K+ E + +   M+K G+ PD  TY  ++D 
Sbjct: 250 IDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDG 309

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
           +C   +  T   +   M   G  P + +YN L+NG CK  ++  A  L + M    ++P+
Sbjct: 310 YCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPN 369

Query: 415 DITYNILLEGHCKHG 429
            +TYN L++G  K G
Sbjct: 370 VVTYNSLIDGLSKSG 384



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+V  +N L+  L K G+I  A  + D+   RG+    +++N++I+   K   +D+   L
Sbjct: 368 PNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIAL 427

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            +  +  G++P +YTY+ LI+GLCK    D             +T N   +  +I G CK
Sbjct: 428 ITKFKDQGIQPSMYTYTILIDGLCKVEGYD-------------ITVN--TYNVMIHGFCK 472

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G  D      EA  ++ +M  +   P+ +TY I +       + + A  + +EMI RG+
Sbjct: 473 KGLFD------EALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGL 526



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 21/172 (12%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID + ++   +  L    ++ D G  P++  +N ++  L K  ++  A  +  +F  +G
Sbjct: 376 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 435

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           +  +  ++  LI+G CK     EG+ +            V TY+ +I+G CK+   D+A 
Sbjct: 436 IQPSMYTYTILIDGLCKV----EGYDIT-----------VNTYNVMIHGFCKKGLFDEAL 480

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
            LL +M +    PN V +   I     N   D      +A K+  EM T GL
Sbjct: 481 SLLSKMKDSSCIPNAVTYEITIRSLLDNNEND------KAEKLFREMITRGL 526


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/356 (32%), Positives = 176/356 (49%), Gaps = 32/356 (8%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G  P V ++  L+  LC+ GK+K A  V D   +RGL    V++N LIN  C
Sbjct: 186 VFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMC 245

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC--ERGLTPN 233
           K  ++ E   L+  M   G++PDV TY+ LI GL     +D+A  LL EM   E  + P+
Sbjct: 246 KEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPD 305

Query: 234 DVIFTTLIDGHCKNG--------RIDMAGD---------------------MKEARKIVD 264
            + F ++I G CK G        R  MA +                     +K+A +++D
Sbjct: 306 LMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMD 365

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM ++GL PD  TY+IL++GFCK   +E A     EM  +G+E + V +  L+   C  G
Sbjct: 366 EMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQG 425

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
            + +A  +  EM +   K D A Y+ +I    K+G+ K     LK+M  +G +P   TY+
Sbjct: 426 MMGQARDLFNEMDR-NCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYS 484

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
             +N   K G L  A  +L  M   G VPD   ++ L++G+   G+ E   +L  E
Sbjct: 485 IPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTRE 540



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 193/455 (42%), Gaps = 73/455 (16%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT----NLPTVTLGFYLEILDYGYSPS 128
           G LD A+   R++  H  R+ +R        +MR           +G    + D G  P 
Sbjct: 70  GCLDAALFLLRVM-SHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPD 128

Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
           V  +  L+  LC    +  A  + +E  + G+    V ++ L++G+CK    +   ++  
Sbjct: 129 VVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFE 188

Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
            M G G+ PDV  Y+ALI+ LC+  ++  A  ++  M ERGL PN V +  LI+  CK G
Sbjct: 189 EMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEG 248

Query: 249 RIDMAGD-----------------------------MKEARKIVDEMCT--NGLNPDKIT 277
            +  A D                             M EA  +++EM      + PD +T
Sbjct: 249 SVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMT 308

Query: 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337
           +  ++ G CK G +  AL +R  M + G   + VAF  LI G  R  KV +A  ++ EM 
Sbjct: 309 FNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMA 368

Query: 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC------ 391
             GL+PD  TY+++I+ FCK    +     L EMR  G  P    Y  L+  +C      
Sbjct: 369 SSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMG 428

Query: 392 ----------------------------KHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
                                       K G+ K A   L  M+D G++PD +TY+I + 
Sbjct: 429 QARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPIN 488

Query: 424 GHCKHGN---PEDFDKLQSEKGLVSDYACYTSLVS 455
              K G+    E   K  +  G V D A + SL+ 
Sbjct: 489 MFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQ 523



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 14/297 (4%)

Query: 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGS---GMRPDVYTYSALINGLCKENRLDDAEL 220
           AVS+NT++   C+   LD    L  VM        RP+  +Y+ L+  LC + R   A  
Sbjct: 56  AVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVG 115

Query: 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280
           LL  M + G+ P+ V + TLI G C       A D+  A ++++EMC +G+ P+ + Y+ 
Sbjct: 116 LLRSMQDCGVRPDVVTYGTLIRGLCD------AADVDTAVELLNEMCESGIEPNVVVYSC 169

Query: 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340
           LL G+CK G  ES   + +EM  RGIE D V +TALI   CR GKV +A R++  M + G
Sbjct: 170 LLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERG 229

Query: 341 LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNAN 400
           L+P+  TY ++I+  CK G  +    L K M   G  P V TYN L+ GL    ++  A 
Sbjct: 230 LEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAM 289

Query: 401 MLLDTML--DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455
            LL+ M+  +  V PD +T+N ++ G CK G      +    + ++++  C  +LV+
Sbjct: 290 ALLEEMMQGETRVRPDLMTFNSVIHGLCKIGW---MRQALQVRAMMAENGCRCNLVA 343



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 131/257 (50%), Gaps = 12/257 (4%)

Query: 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-- 228
           +N H +   L E   L S +       D  +Y+ ++  LC++  LD A  LL  M     
Sbjct: 31  LNRHLRLLPLPESPALLSALPSVR---DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPR 87

Query: 229 -GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
               PN + +TTL+   C + R        +A  ++  M   G+ PD +TY  L+ G C 
Sbjct: 88  LASRPNAISYTTLMRALCADRRA------AQAVGLLRSMQDCGVRPDVVTYGTLIRGLCD 141

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
             D+++A+++  EM + GIE + V ++ L+ G+C+ G+     ++  EM   G++PD   
Sbjct: 142 AADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVM 201

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           YT +ID  C++G  K   R++  M   G  P V TYN L+N +CK G ++ A  L   M 
Sbjct: 202 YTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMS 261

Query: 408 DLGVVPDDITYNILLEG 424
           + GV PD +TYN L+ G
Sbjct: 262 EKGVQPDVVTYNTLITG 278



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 124/245 (50%), Gaps = 7/245 (2%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P +  FN ++H LCK G ++ A  V     + G     V+FN LI G  +   + +   L
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMEL 363

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  SG++PD +TYS LING CK  +++ AE  L EM  +G+ P  V +  L+   C 
Sbjct: 364 MDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCD 423

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G       M +AR + +EM  N    D   Y+ ++ G  K G+ + A +  K+MI  G+
Sbjct: 424 QGM------MGQARDLFNEMDRN-CKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGL 476

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
             D V ++  I+ F + G +  AER+L++M   G  PD A +  +I  +   GDT+    
Sbjct: 477 IPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILE 536

Query: 367 LLKEM 371
           L +EM
Sbjct: 537 LTREM 541


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 173/350 (49%), Gaps = 13/350 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P    ++ ++  LC   K++ A ++F E    G+     ++  LI+  CKA 
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++   L   M   G  P V TY+ALI+   K  ++  A  + H M + G  PNDV + 
Sbjct: 338 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397

Query: 239 TLIDGHCKNGRIDMA--------GDMKEARKIVDEMCTN--GLNPDKITYTILLDGFCKE 288
            L+DG CK G I  A        G    A       C +   L P+ +TY  L+DG CK 
Sbjct: 398 ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKA 457

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             ++ A ++   M+  G E +++ + ALI GFC+ GK+  A+ +  +M K G  P   TY
Sbjct: 458 HKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTY 517

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T +ID   K+G      ++L +M  D   P V TY A+++GLC+ G+ + A  LL  M +
Sbjct: 518 TSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEE 577

Query: 409 LGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
            G  P+ +TY  L++G  K G  +   D     S KG   +Y  Y  L++
Sbjct: 578 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLIN 627



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 167/322 (51%), Gaps = 22/322 (6%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY + +L+   CK G I+ AQ +F+E    G   T V++  LI+ + KAK + + 
Sbjct: 318 GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQA 377

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRL--------------DDAELLLHEMCE-- 227
             +   M  +G RP+  TY AL++GLCK   +              D A+   +  CE  
Sbjct: 378 NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDR 437

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
             L PN V +  L+DG CK  ++D       A +++D M ++G  P+ I Y  L+DGFCK
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVD------HAHELLDAMLSSGCEPNHIVYDALIDGFCK 491

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++SA ++  +M K G       +T+LI    + G++  A ++L +MLK    P+  T
Sbjct: 492 AGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVT 551

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           YT +ID  C+ G+++   +LL  M   G  P V TY AL++GL K G++  +  L   M 
Sbjct: 552 YTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMS 611

Query: 408 DLGVVPDDITYNILLEGHCKHG 429
             G  P+ +TY +L+   C  G
Sbjct: 612 RKGCSPNYVTYRVLINHLCAAG 633



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 156/323 (48%), Gaps = 22/323 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +  L       + E+   G SP+V  +  L+H   K  ++  A  +F      G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG----------------MRPDVYTYS 203
                V++  L++G CKA N+ + F + + + G+                 + P+V TY 
Sbjct: 389 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 448

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           AL++GLCK +++D A  LL  M   G  PN +++  LIDG CK G+ID       A+++ 
Sbjct: 449 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID------SAQEVF 502

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            +M   G  P   TYT L+D   K+G L+ A+ +  +M+K     + V +TA+I G CR 
Sbjct: 503 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 562

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A ++L  M + G  P+  TYT +ID   K G       L  +M   G  P   TY
Sbjct: 563 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTY 622

Query: 384 NALMNGLCKHGQLKNANMLLDTM 406
             L+N LC  G L  A +LL  M
Sbjct: 623 RVLINHLCAAGLLDKARLLLGEM 645



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 159/362 (43%), Gaps = 52/362 (14%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           V LGF +  E+ + G+    +      H LCKEG+  DA    D   +       V    
Sbjct: 56  VDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTH 112

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+G  +A   DE       M  +   P+V TY  L++G  K+ +L   + +++ M   G
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 172

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE- 288
             PN  +F +L+  +C         D   A K+++ M T G  P  + Y I +   C + 
Sbjct: 173 CNPNPSLFNSLVHSYCNEK------DYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 226

Query: 289 ----------------------------------------GDLESALDIRKEMIKRGIEL 308
                                                   G  + A  + KEM+++G   
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 286

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D   ++ +I+  C   KV +A  + +EM  VG+ PD  TYT++ID FCK G  +    L 
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +EMRS G  P V TY AL++   K  Q+  AN +   M+D G  P+D+TY  L++G CK 
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 429 GN 430
           GN
Sbjct: 407 GN 408



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 162/348 (46%), Gaps = 48/348 (13%)

Query: 116 FYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           FY    D +  +P+V  +  L+  LCK  K+  A  + D     G     + ++ LI+G 
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CKA  +D    +   M   G  P V+TY++LI+ + K+ RLD A  +L +M +   TPN 
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +T +IDG C+       G+ ++A K++  M   G +P+ +TYT L+DG  K G ++ +
Sbjct: 550 VTYTAMIDGLCR------IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLS 603

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGG------------------KVVEAER----- 331
           LD+  +M ++G   + V +  LI+  C  G                  K ++  R     
Sbjct: 604 LDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQG 663

Query: 332 ----------MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-V 380
                     +L EM   G  P    Y M+IDCF K G  +    L KEM     +P+ V
Sbjct: 664 FSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMM---EVPSSV 720

Query: 381 ET----YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +T    Y +L+  LC   Q++ A  L   M   G VP+   +  L++G
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 768



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 140/357 (39%), Gaps = 50/357 (14%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           D++    +FG R    + V++N L+     A  +D GFR++  M  SG   D +T     
Sbjct: 26  DSEDPLKDFGYR---PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFA 82

Query: 207 NGLCKENR--------------------------------LDDAELLLHEMCERGLTPND 234
           + LCKE R                                 D+A   LH M      PN 
Sbjct: 83  HALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNV 142

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + TL+ G  K  ++         ++I++ M T G NP+   +  L+  +C E D   A
Sbjct: 143 VTYRTLLSGFLKKKQLGW------CKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYA 196

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE------AERMLREMLKVGLKPDDATY 348
             +   M   G     V +   I   C   K+        AE++  EML      +    
Sbjct: 197 YKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNV 256

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
                C C  G     F+L+KEM   G +P   TY+ ++  LC   +++ A +L   M  
Sbjct: 257 ANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM 316

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSKYRQ 462
           +GV PD  TY IL++  CK G  E    L  E    G       YT+L+    K +Q
Sbjct: 317 VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 373



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 8/234 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + R       L     + + G SP+V  +  L+  L K GKI  +  +F +  ++G
Sbjct: 555 MIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG 614

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  LIN  C A  LD+   L   M+ +     +  Y   I G  K      + 
Sbjct: 615 CSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FIASL 672

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-KEARKIVDEMCTNGLNPDKITY 278
            +L EM   G  P   ++  LID   K GR+++A ++ KE  ++      + +  D   Y
Sbjct: 673 GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEV-----PSSVKTDNDMY 727

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
             L+   C    +E A  +  EM +RG   +   F  LI G     K  EA ++
Sbjct: 728 ASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G LD A      +++ Y+    +G RC I    ++ +   +LG   E+  YG  P   V+
Sbjct: 633 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFI--ASLGILEEMESYGTVPIAPVY 690

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGK--RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +L+    K G+++ A  +  E  +    +      + +LI   C A  ++E FRL S M
Sbjct: 691 GMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 750

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC-ERGL----TPNDVIFT--TLIDG 243
              G  P++  +  LI GL +  + D+A  L + +C E GL    T    +FT   ++ G
Sbjct: 751 TRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEVGLLLSYTTQIFLFTFVVIVVG 810

Query: 244 HCKN 247
           + KN
Sbjct: 811 YGKN 814


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 178/353 (50%), Gaps = 23/353 (6%)

Query: 87  KHYFRIPARGCR--------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           K ++R    GCR         L+D ++R N+    +  Y  +   G  P+VY +N+L+  
Sbjct: 107 KTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRA 166

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE--GFRLKSVMEGSGMR 196
           LC+  ++  A+ + DE  ++G H   VS  T+++G CK   ++E  GF  ++V       
Sbjct: 167 LCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETV------- 219

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P   +Y+A+++ LC E R+ +   +++EM +RGL PN V +TT++D  CK      A ++
Sbjct: 220 PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCK------AREL 273

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           + A  I+  M + G  P+ +T+T L+ GF ++G +  AL +   M+  G     +++  L
Sbjct: 274 RMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVL 333

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I G C  G +  A      M +  L P+  TY+ ++D F   GD      +  EM+S G 
Sbjct: 334 IRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGC 393

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            P V  Y  +++ LCK      A  L+D ML     P+ +T+N L+   C  G
Sbjct: 394 KPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCG 446



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  ++D G++PS   +NVL+  LC  G +K A   F+   +  L   A +++TL++
Sbjct: 311 ALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVD 370

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G   A +LD    + + M+ SG +P+V  Y+ +I+ LCK+   D AE L+ +M      P
Sbjct: 371 GFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPP 430

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V F TLI   C  GR+        A  +   M  NG +P+  TY  LL G  +EG+ +
Sbjct: 431 NTVTFNTLIGRLCDCGRVG------RALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHK 484

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM+  G EL  V +  +I+  C+      A  +L  M+  G++PD  T+  +I
Sbjct: 485 DAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAII 544

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +CK G       LL +M +      V  Y  L++ LC  G+L NA + L  ML  G+ 
Sbjct: 545 HAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGIC 604

Query: 413 PDDITYNILLEG 424
           P++ T+N+L+  
Sbjct: 605 PNEATWNVLVRA 616



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 176/380 (46%), Gaps = 49/380 (12%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           GF  E +     P    +N ++H LC E ++ +   V +E  +RGL    V++ T+++  
Sbjct: 213 GFLAETV-----PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAF 267

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CKA+ L     + + M   G  P+V T++AL+ G  ++ ++ DA  + H M + G  P+ 
Sbjct: 268 CKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPST 327

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           + +  LI G C        GD+K A    + M  N L P+  TY+ L+DGF   GDL+ A
Sbjct: 328 ISYNVLIRGLC------CIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGA 381

Query: 295 LDIRKEMIKRGIE------------------------------LDN-----VAFTALISG 319
           + I  EM   G +                              +DN     V F  LI  
Sbjct: 382 MLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGR 441

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            C  G+V  A  +   M + G  P+D TY  ++    + G+ K  F ++ EM ++G   +
Sbjct: 442 LCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELS 501

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           + TYN ++N LC+    K+A +LL  M+  G+ PD  T+N ++  +CK G       L  
Sbjct: 502 LVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLG 561

Query: 440 EKGLVS---DYACYTSLVSK 456
           +   V+   +   YT L+S+
Sbjct: 562 QMNAVNCPRNVVAYTILISE 581



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 6/311 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            ++  G +P+V  F  L+    ++GK+ DA  ++      G   + +S+N LI G C   
Sbjct: 282 RMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIG 341

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L       + M+ + + P+  TYS L++G      LD A L+ +EM   G  PN V++T
Sbjct: 342 DLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYT 401

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +ID  CK    D      +A  ++D+M  +   P+ +T+  L+   C  G +  AL++ 
Sbjct: 402 NMIDVLCKKMMFD------QAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVF 455

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M + G   ++  +  L+ G  R G   +A  M+ EML  G +    TY  VI+C C+ 
Sbjct: 456 HGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQM 515

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              K    LL  M   G  P   T+NA+++  CK G++  A  LL  M  +    + + Y
Sbjct: 516 CMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAY 575

Query: 419 NILLEGHCKHG 429
            IL+   C  G
Sbjct: 576 TILISELCNQG 586



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 3/167 (1%)

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK-PDDAT 347
           GD++      +EM  RG+     A  A I  F R G    A +       +G + P    
Sbjct: 65  GDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRV 124

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           Y  ++D   +         +   MR  G  P V TYN L+  LC++ ++  A  +LD M 
Sbjct: 125 YNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMS 184

Query: 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
             G  PD++++  ++ G CK G  E+     +E   V   A Y ++V
Sbjct: 185 RKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAET--VPVQASYNAVV 229


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 197/433 (45%), Gaps = 22/433 (5%)

Query: 13  MVHFLVAHKMHSQARDLLHLIVSKKGMGSSAS----LFASILETRGTHLPGLVLD----- 63
           + HF+   K    +    H + S+ G    +S    LF +++E    +     LD     
Sbjct: 130 LSHFVEHQKNALISLRFFHWLSSQSGFSPDSSSCNVLFDALVEAGACNAAKSFLDSTNFN 189

Query: 64  ---ALMIVYVDL----GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGF 116
              A +  Y+      G +++AI  F  L+             ++   +R          
Sbjct: 190 PKPASLEAYIRCLCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWEL 249

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           Y E+++      V+    L+   C E +I D   +     + G+     +FN LI+G CK
Sbjct: 250 YGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCK 309

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            K       L   M      PD++TY  ++NGLCK  +  +   +  ++ +RG  P+ V+
Sbjct: 310 DKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVM 369

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +TT+I G C   R+   GD   ARK+  EM   G  P++ TY  ++ G+ K G+LE A  
Sbjct: 370 YTTMIHGLC---RMKWLGD---ARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWK 423

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           + +EM  +G     V++  +I G C  GK+ EA  +  EM   G+  +  TY  ++  FC
Sbjct: 424 MYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFC 483

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
           K G    G  LL E+   G  P+  +Y  L++ LC+ G ++NA +L D M + G+ P   
Sbjct: 484 KEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVC 543

Query: 417 TYNILLEGHCKHG 429
           T++ ++ G CK G
Sbjct: 544 THDFMITGFCKQG 556



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 156/304 (51%), Gaps = 6/304 (1%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +L+ G  P    FN L+   CK+        +      R       ++  ++NG CK   
Sbjct: 288 VLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGK 347

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
             EGFR+   ++  G  PD   Y+ +I+GLC+   L DA  L  EM ++G  PN+  +  
Sbjct: 348 GPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNA 407

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
           +I G+ K       G+++EA K+  EMC  G     ++Y +++ G C  G ++ A D+ +
Sbjct: 408 MIHGYFK------IGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFE 461

Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
           EM  +GI  +++ + AL+ GFC+ GK+VE   +L E+L  G++P  A+Y  +ID  C+ G
Sbjct: 462 EMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEG 521

Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           D +    L  +M++ G  PAV T++ ++ G CK G        L TML   + P   ++ 
Sbjct: 522 DMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFE 581

Query: 420 ILLE 423
            L++
Sbjct: 582 SLIQ 585



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 175/383 (45%), Gaps = 36/383 (9%)

Query: 90  FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149
           F   +  C  L D ++          F   +    ++P        +  LCK G +++A 
Sbjct: 156 FSPDSSSCNVLFDALVEAGACNAAKSF---LDSTNFNPKPASLEAYIRCLCKGGLVEEAI 212

Query: 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            VF +    G+ A+  ++N+++ G  +A  +D  + L   M  S +  DV+T   L+   
Sbjct: 213 SVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYLVQAF 272

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN---GRI----------DMAGDM 256
           C ENR+ D   LL  + E G+ P +  F  LI G CK+   GR+          + A D+
Sbjct: 273 CDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDI 332

Query: 257 KEARKIVDEMCTNG----------------LNPDKITYTILLDGFCKEGDLESALDIRKE 300
              +++V+ +C  G                  PD++ YT ++ G C+   L  A  +  E
Sbjct: 333 FTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFE 392

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
           MI++G   +   + A+I G+ + G + EA +M REM   G      +Y ++I   C +G 
Sbjct: 393 MIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGK 452

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
            K    L +EM   G L    TYNAL+ G CK G++     LL  +LD G+ P   +Y  
Sbjct: 453 IKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAP 512

Query: 421 LLEGHCKHGNPED----FDKLQS 439
           L++  C+ G+ ++    +D +Q+
Sbjct: 513 LIDKLCQEGDMQNAKILWDDMQN 535



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR 185
           +P ++ +  +++ LCK GK  +   VF +   RG     V + T+I+G C+ K L +  +
Sbjct: 329 APDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARK 388

Query: 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245
           L   M   G  P+ YTY+A+I+G  K   L++A  +  EMC++G     V +  +I G C
Sbjct: 389 LWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLC 448

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
            +G+I      KEA  + +EM   G+  + ITY  L+ GFCKEG +    ++  E++ +G
Sbjct: 449 SHGKI------KEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQG 502

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           I+    ++  LI   C+ G +  A+ +  +M   G++P   T+  +I  FCK G    G 
Sbjct: 503 IQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGM 562

Query: 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
             L  M      P  +++ +L+  L +  +L +A ++LD+ML +G
Sbjct: 563 EWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLDSMLKIG 607



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 139/280 (49%), Gaps = 6/280 (2%)

Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           + ++ D GY+P   ++  ++H LC+   + DA+ ++ E  ++G      ++N +I+G+ K
Sbjct: 355 FKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFK 414

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
             NL+E +++   M   G      +Y+ +I GLC   ++ +A  L  EM  +G+  N + 
Sbjct: 415 IGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHIT 474

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +  L+ G CK G+I       E   ++ E+   G+ P   +Y  L+D  C+EGD+++A  
Sbjct: 475 YNALVRGFCKEGKI------VEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKI 528

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
           +  +M  RG+E        +I+GFC+ G  +E    L  ML+  L+P   ++  +I C  
Sbjct: 529 LWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLS 588

Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           +         +L  M   G   ++   N+L+  LC+   L
Sbjct: 589 QIDRLDDALLVLDSMLKIGFRLSISICNSLVTKLCEKNSL 628



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 12/334 (3%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+SP     NVL   L + G    A+   D       +    S    I   CK   ++E 
Sbjct: 155 GFSPDSSSCNVLFDALVEAGACNAAKSFLDS---TNFNPKPASLEAYIRCLCKGGLVEEA 211

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   ++G G+   + T+++++ G  +  R+D    L  EM E  +  +      L+  
Sbjct: 212 ISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYLVQA 271

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C   RI       +   ++  +  +G+ P    +  L+ GFCK+       D+   MI 
Sbjct: 272 FCDENRIS------DGHNLLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIA 325

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R    D   +  +++G C+GGK  E  R+ +++   G  PD   YT +I   C+      
Sbjct: 326 RNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGD 385

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             +L  EM   G LP   TYNA+++G  K G L+ A  +   M D G     ++YN++++
Sbjct: 386 ARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIK 445

Query: 424 GHCKHG---NPEDFDKLQSEKGLVSDYACYTSLV 454
           G C HG      D  +  S KG++ ++  Y +LV
Sbjct: 446 GLCSHGKIKEAHDLFEEMSHKGILRNHITYNALV 479



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 130/312 (41%), Gaps = 58/312 (18%)

Query: 10  YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVY 69
           Y+TM+H L   K    AR L   ++ K             L    T+      +A++  Y
Sbjct: 370 YTTMIHGLCRMKWLGDARKLWFEMIQK-----------GFLPNEYTY------NAMIHGY 412

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
             +G L++A + +R                                   E+ D GY    
Sbjct: 413 FKIGNLEEAWKMYR-----------------------------------EMCDKGYGEKT 437

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
             +NV++  LC  GKIK+A  +F+E   +G+    +++N L+ G CK   + EG  L   
Sbjct: 438 VSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYE 497

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +   G++P   +Y+ LI+ LC+E  + +A++L  +M  RG+ P       +I G CK   
Sbjct: 498 LLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQ-- 555

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
               G   E  + +  M  + L P K ++  L+    +   L+ AL +   M+K G  L 
Sbjct: 556 ----GCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRLS 611

Query: 310 NVAFTALISGFC 321
                +L++  C
Sbjct: 612 ISICNSLVTKLC 623


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 183/372 (49%), Gaps = 20/372 (5%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE---GKIKDAQMVFDEFG 156
           L++R  R      +L F   ++D GY+P V +   L+         GK      + + +G
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
           K  + A    +N LI+G  KA  L+   R+   M+  G  PDV TY+ +I   C   +LD
Sbjct: 135 KPDVFA----YNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLD 190

Query: 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276
            A  +  E+ +    P  + +T LI+    +G ID+A       K++DEM + GL PD +
Sbjct: 191 LALEIFEELLKDNCEPTVITYTILIEATILDGGIDVA------MKLLDEMLSKGLEPDTL 244

Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
           TY  ++ G CKE  ++ A ++ + +  RG + D + +  L+      GK  E E+++ EM
Sbjct: 245 TYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEM 304

Query: 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396
           + +G KP+  T++++I   C++G  +    LL+ M+  G  P    Y+ L+ G C+ G+L
Sbjct: 305 ISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRL 364

Query: 397 KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-------EDFDKLQSEKGLVSDYAC 449
             A   L+ M+  G +PD + YN ++ G C+ G         E  D++     + S    
Sbjct: 365 DLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTL 424

Query: 450 YTSLVSKSSKYR 461
           +++L S   +YR
Sbjct: 425 FSALWSSGDRYR 436



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 186/376 (49%), Gaps = 8/376 (2%)

Query: 50  LETRGTHLPGLVLDALMI-VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
           +++RG  LP +V   +MI  +   G LD A++ F  L K            LI+  +   
Sbjct: 164 MKSRG-FLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDG 222

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              V +    E+L  G  P    +N ++  +CKE  +  A  +      RG     +++N
Sbjct: 223 GIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYN 282

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
            L+          EG +L S M   G +P+V T+S LI  LC++ ++++A  LL  M E+
Sbjct: 283 ILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEK 342

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           GL P+   +  LI G C+ GR+D+A +  E       M ++G  PD + Y  ++ G C+ 
Sbjct: 343 GLKPDAYCYDPLIAGFCREGRLDLATEFLEY------MISDGCLPDIVNYNTIMAGLCRT 396

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
           G  + AL++ +++ + G   +  ++  L S     G    A  M+ ++L  G+ PD+ TY
Sbjct: 397 GKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITY 456

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
             +I C C++G       LL +M+S  + P V +YN ++ GLCK  +  +A  +L  M +
Sbjct: 457 NSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTE 516

Query: 409 LGVVPDDITYNILLEG 424
            G  P++ TY +L+EG
Sbjct: 517 KGCQPNETTYILLIEG 532



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 6/306 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P V  +N+++   C  GK+  A  +F+E  K     T +++  LI        +D  
Sbjct: 168 GFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVA 227

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M   G+ PD  TY+A+I G+CKE  +D A  LL  +  RG  P+ + +  L+  
Sbjct: 228 MKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRT 287

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
               G+        E  K++ EM + G  P+ +T++IL+   C++G +E A+++ + M +
Sbjct: 288 LLSRGK------WSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKE 341

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           +G++ D   +  LI+GFCR G++  A   L  M+  G  PD   Y  ++   C+ G    
Sbjct: 342 KGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQ 401

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              + +++   G  P V +YN L + L   G    A  ++  +L+ G+ PD+ITYN L+ 
Sbjct: 402 ALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLIS 461

Query: 424 GHCKHG 429
             C+ G
Sbjct: 462 CLCRDG 467



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 179/390 (45%), Gaps = 28/390 (7%)

Query: 70  VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129
           VD G+  D I C +L+ K +F   +R     I +  R           +EIL+    P V
Sbjct: 96  VDKGYTPDVILCTKLI-KGFFN--SRN----IGKATRV----------MEILERYGKPDV 138

Query: 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189
           + +N L+    K  ++++A  V D    RG     V++N +I   C    LD    +   
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEE 198

Query: 190 MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249
           +      P V TY+ LI     +  +D A  LL EM  +GL P+ + +  +I G CK   
Sbjct: 199 LLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMM 258

Query: 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
           +D      +A +++  + + G  PD ITY ILL      G       +  EMI  G + +
Sbjct: 259 VD------KAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPN 312

Query: 310 NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369
            V  + LI   CR GKV EA  +LR M + GLKPD   Y  +I  FC+ G        L+
Sbjct: 313 VVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLE 372

Query: 370 EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            M SDG LP +  YN +M GLC+ G+   A  + + + ++G  P+  +YN L       G
Sbjct: 373 YMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSG 432

Query: 430 NP----EDFDKLQSEKGLVSDYACYTSLVS 455
           +     E   KL ++ G+  D   Y SL+S
Sbjct: 433 DRYRALEMILKLLNQ-GIDPDEITYNSLIS 461



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           +   V    L++  CR GK  E+   L  M+  G  PD    T +I  F  + +     R
Sbjct: 66  DFKEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATR 125

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +++ +   G  P V  YNAL++G  K  QL+NAN +LD M   G +PD +TYNI++   C
Sbjct: 126 VMEILERYGK-PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFC 184

Query: 427 KHG 429
             G
Sbjct: 185 SRG 187



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L   L++L+ G  P    +N L+  LC++G + +A  +  +          VS+N ++ 
Sbjct: 437 ALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILL 496

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
           G CK    ++   + + M   G +P+  TY  LI G+
Sbjct: 497 GLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGI 533


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 178/353 (50%), Gaps = 23/353 (6%)

Query: 87  KHYFRIPARGCR--------CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138
           K ++R    GCR         L+D ++R N+    +  Y  +   G  P+VY +N+L+  
Sbjct: 54  KTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRA 113

Query: 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE--GFRLKSVMEGSGMR 196
           LC+  ++  A+ + DE  ++G H   VS  T+++G CK   ++E  GF  ++V       
Sbjct: 114 LCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETV------- 166

Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM 256
           P   +Y+A+++ LC E R+ +   +++EM +RGL PN V +TT++D  CK      A ++
Sbjct: 167 PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCK------AREL 220

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
           + A  I+  M + G  P+ +T+T L+ GF ++G +  AL +   M+  G     +++  L
Sbjct: 221 RMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVL 280

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           I G C  G +  A      M +  L P+  TY+ ++D F   GD      +  EM+S G 
Sbjct: 281 IRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGC 340

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
            P V  Y  +++ LCK      A  L+D ML     P+ +T+N L+   C  G
Sbjct: 341 KPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCG 393



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  +  ++D G++PS   +NVL+  LC  G +K A   F+   +  L   A +++TL++
Sbjct: 258 ALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVD 317

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G   A +LD    + + M+ SG +P+V  Y+ +I+ LCK+   D AE L+ +M      P
Sbjct: 318 GFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPP 377

Query: 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           N V F TLI   C  GR+        A  +   M  NG +P+  TY  LL G  +EG+ +
Sbjct: 378 NTVTFNTLIGRLCDCGRVG------RALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHK 431

Query: 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352
            A  +  EM+  G EL  V +  +I+  C+      A  +L  M+  G++PD  T+  +I
Sbjct: 432 DAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAII 491

Query: 353 DCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
             +CK G       LL +M +      V  Y  L++ LC  G+L NA + L  ML  G+ 
Sbjct: 492 HAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGIC 551

Query: 413 PDDITYNILLEG 424
           P++ T+N+L+  
Sbjct: 552 PNEATWNVLVRA 563



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 172/368 (46%), Gaps = 44/368 (11%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P    +N ++H LC E ++ +   V +E  +RGL    V++ T+++  CKA+ L     +
Sbjct: 167 PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAI 226

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
            + M   G  P+V T++AL+ G  ++ ++ DA  + H M + G  P+ + +  LI G C 
Sbjct: 227 LARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLC- 285

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
                  GD+K A    + M  N L P+  TY+ L+DGF   GDL+ A+ I  EM   G 
Sbjct: 286 -----CIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGC 340

Query: 307 E------------------------------LDN-----VAFTALISGFCRGGKVVEAER 331
           +                              +DN     V F  LI   C  G+V  A  
Sbjct: 341 KPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALN 400

Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
           +   M + G  P+D TY  ++    + G+ K  F ++ EM ++G   ++ TYN ++N LC
Sbjct: 401 VFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLC 460

Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVS---DYA 448
           +    K+A +LL  M+  G+ PD  T+N ++  +CK G       L  +   V+   +  
Sbjct: 461 QMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVV 520

Query: 449 CYTSLVSK 456
            YT L+S+
Sbjct: 521 AYTILISE 528



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 6/311 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
            ++  G +P+V  F  L+    ++GK+ DA  ++      G   + +S+N LI G C   
Sbjct: 229 RMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIG 288

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
           +L       + M+ + + P+  TYS L++G      LD A L+ +EM   G  PN V++T
Sbjct: 289 DLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYT 348

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            +ID  CK    D      +A  ++D+M  +   P+ +T+  L+   C  G +  AL++ 
Sbjct: 349 NMIDVLCKKMMFD------QAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVF 402

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
             M + G   ++  +  L+ G  R G   +A  M+ EML  G +    TY  VI+C C+ 
Sbjct: 403 HGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQM 462

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
              K    LL  M   G  P   T+NA+++  CK G++  A  LL  M  +    + + Y
Sbjct: 463 CMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAY 522

Query: 419 NILLEGHCKHG 429
            IL+   C  G
Sbjct: 523 TILISELCNQG 533



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 3/172 (1%)

Query: 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK- 342
           G    GD++      +EM  RG+     A  A I  F R G    A +       +G + 
Sbjct: 7   GLPAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRD 66

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P    Y  ++D   +         +   MR  G  P V TYN L+  LC++ ++  A  +
Sbjct: 67  PGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKM 126

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLV 454
           LD M   G  PD++++  ++ G CK G  E+     +E   V   A Y ++V
Sbjct: 127 LDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAET--VPVQASYNAVV 176


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 180/377 (47%), Gaps = 7/377 (1%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEI 120
           L AL+  Y D G L  A      LR+ Y  +P    C  L+  ++           Y E+
Sbjct: 136 LGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEM 195

Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           L        Y   VL+  LC EG++++   + +     G     V +N LI+G+C+  ++
Sbjct: 196 LGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDM 255

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
             G  L   ME  G  P + TY +LIN L K+  L+    L  EM +RGL+PN  I+ ++
Sbjct: 256 GRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSV 315

Query: 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300
           ID  CK           +A  I+ +M  +G +PD IT+  L+ G C EG +  A    +E
Sbjct: 316 IDALCK------CWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLRE 369

Query: 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360
            I+R +  + +++T LI GFC  G+++ A  +L EM+  G  PD  T+  +I      G 
Sbjct: 370 AIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGK 429

Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420
                 + ++M      P V  YN L++GLCK   L  A  +L+ ML+  V PD+  Y  
Sbjct: 430 VSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYAT 489

Query: 421 LLEGHCKHGNPEDFDKL 437
           L++G  +  N  D  K+
Sbjct: 490 LIDGFIRSENLGDARKI 506



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 160/307 (52%), Gaps = 6/307 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P++  +  L++ L K+G ++    +F E  KRGL      +N++I+  CK  +  + 
Sbjct: 269 GFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQA 328

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             +   M  SG  PD+ T++ LI GLC E  +  AE  L E   R L PN + +T LI G
Sbjct: 329 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 388

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            C      M G++  A  ++ EM   G  PD +T+  L+ G    G +  AL +R++M +
Sbjct: 389 FC------MRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 442

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           R +  D   +  LISG C+   +  A+ +L EML+  ++PD+  Y  +ID F ++ +   
Sbjct: 443 RQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGD 502

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
             ++ + M   G  P + + NA++ G C+ G +  A + +  M  +G +PD+ TY  ++ 
Sbjct: 503 ARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVIS 562

Query: 424 GHCKHGN 430
           G+ K GN
Sbjct: 563 GYAKQGN 569



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 162/323 (50%), Gaps = 6/323 (1%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +    T  +    ++   G  P +  FN L+  LC EG ++ A+    E  +R 
Sbjct: 315 VIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRE 374

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L+   +S+  LI+G C    L     L   M G G  PDV T+ ALI+GL    ++ +A 
Sbjct: 375 LNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEAL 434

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           ++  +M ER + P+  I+  LI G CK         +  A+ I++EM    + PD+  Y 
Sbjct: 435 IVREKMTERQVFPDVNIYNVLISGLCKKHM------LPAAKNILEEMLEKNVQPDEFVYA 488

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DGF +  +L  A  I + M  +G+  D V+  A+I G+C+ G + EA   +  M KV
Sbjct: 489 TLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV 548

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD+ TYT VI  + K G+     R L +M      P V TY++L+NG CK G   +A
Sbjct: 549 GCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSA 608

Query: 400 NMLLDTMLDLGVVPDDITYNILL 422
             L   M    + P+ +TY IL+
Sbjct: 609 EGLFANMQAEALSPNVVTYTILI 631



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 165/336 (49%), Gaps = 9/336 (2%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
            YG  P V   N L+  L ++ +  DA+ ++DE       A   S   L+ G C    ++
Sbjct: 162 QYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVE 221

Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
           EG +L     G+G  P V  Y+ LI+G C+   +    LLL EM  +G  P  V + +LI
Sbjct: 222 EGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLI 281

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
           +   K G      D+++   +  EM   GL+P+   Y  ++D  CK      A+ I K+M
Sbjct: 282 NCLGKKG------DLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQM 335

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
              G + D + F  LI+G C  G V +AE  LRE ++  L P+  +YT +I  FC  G+ 
Sbjct: 336 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 395

Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
                LL EM   GH P V T+ AL++GL   G++  A ++ + M +  V PD   YN+L
Sbjct: 396 MAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVL 455

Query: 422 LEGHC-KHGNPEDFDKLQS--EKGLVSDYACYTSLV 454
           + G C KH  P   + L+   EK +  D   Y +L+
Sbjct: 456 ISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLI 491



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 161/309 (52%), Gaps = 6/309 (1%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
           F  E +    +P+   +  L+H  C  G++  A  +  E   RG     V+F  LI+G  
Sbjct: 366 FLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLV 425

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
            A  + E   ++  M    + PDV  Y+ LI+GLCK++ L  A+ +L EM E+ + P++ 
Sbjct: 426 VAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEF 485

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
           ++ TLIDG  +      + ++ +ARKI + M   G+ PD ++   ++ G+C+ G +  A+
Sbjct: 486 VYATLIDGFIR------SENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAI 539

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
                M K G   D   +T +ISG+ + G +  A R L +M+K   KP+  TY+ +I+ +
Sbjct: 540 LCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGY 599

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
           CK GDT +   L   M+++   P V TY  L+  L K  ++  A +  +TML     P+D
Sbjct: 600 CKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPND 659

Query: 416 ITYNILLEG 424
           +T + L+ G
Sbjct: 660 VTLHYLVNG 668



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 21/323 (6%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P V ++NVL+  LCK+  +  A+ + +E  ++ +      + TLI+G  +++NL +  ++
Sbjct: 447 PDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 506

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              ME  G+RPD+ + +A+I G C+   + +A L +  M + G  P++  +TT+I G+ K
Sbjct: 507 FEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAK 566

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
            G ++  G ++    ++   C     P+ +TY+ L++G+CK GD +SA  +   M    +
Sbjct: 567 QGNLN--GALRWLCDMIKRKC----KPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEAL 620

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY-----------TMVIDCF 355
             + V +T LI    +  KV+ A      ML     P+D T              VI+  
Sbjct: 621 SPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSI 680

Query: 356 CKNGDTKTG----FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
           C N     G      + K++  D   P    YNA++  LC+H  L+ A    + M   G 
Sbjct: 681 CCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGY 740

Query: 412 VPDDITYNILLEGHCKHGNPEDF 434
           VP+ IT+  LL G C  G   ++
Sbjct: 741 VPNPITFLSLLYGFCSVGKSMNW 763



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 52/282 (18%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155
           LID  +R+      LG   +I ++    G  P +   N ++   C+ G + +A +     
Sbjct: 490 LIDGFIRSE----NLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNM 545

Query: 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215
            K G      ++ T+I+G+ K  NL+   R    M     +P+V TYS+LING CK    
Sbjct: 546 RKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDT 605

Query: 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK-------------- 261
           D AE L   M    L+PN V +T LI    K  ++  AG   E                 
Sbjct: 606 DSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYL 665

Query: 262 ----------IVDEMCTNGL--------------------NPDKITYTILLDGFCKEGDL 291
                     +++ +C N                      +P    Y  ++   C+   L
Sbjct: 666 VNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNML 725

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333
             ALD +  M K+G   + + F +L+ GFC  GK +    +L
Sbjct: 726 REALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMNWRTIL 767


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 6/306 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P +Y +N ++  +CKEG ++ A  +      +G     +S+N L+       
Sbjct: 242 EMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQG 301

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             DEG +L + M   G  P+  TYS LI+ LC+  R+D+A  +L  M E+ LTP+   + 
Sbjct: 302 KWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYD 361

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   CK GR+D+A        I+D M +NG  PD + Y  +L   CK G+   AL+I 
Sbjct: 362 PLISALCKEGRLDLA------IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 415

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++   G   +  ++  +IS     G    A  M+  M+  G+ PD+ TY  +I C C++
Sbjct: 416 NKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRD 475

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LL +M   G  P V +YN ++ GLCK  ++ +A  +   M++ G  P++ TY
Sbjct: 476 GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTY 535

Query: 419 NILLEG 424
            +L+EG
Sbjct: 536 ILLIEG 541



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 175/354 (49%), Gaps = 35/354 (9%)

Query: 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194
           L+++ CK GK  ++    +    +G     +    LI G    KN+++  R+  ++E S 
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILE-SH 142

Query: 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA- 253
             PDV+ Y+A+I+G CK N+++ A  +L+ M  RG  P+ V +  +I   C   ++ +A 
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 254 ----------------------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285
                                       G + EA K+++EM   GL PD  TY  ++ G 
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262

Query: 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
           CKEG +E A ++   +  +G E D +++  L+  F   GK  E E+++ EM   G +P+ 
Sbjct: 263 CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322

Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405
            TY+++I   C+ G       +LK M      P   +Y+ L++ LCK G+L  A  ++D 
Sbjct: 323 VTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDY 382

Query: 406 MLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLVSDYACYTSLVS 455
           M+  G +PD + YN +L   CK+GN     E F+KL+   G   + + Y +++S
Sbjct: 383 MISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRG-MGCPPNVSSYNTMIS 435



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 158/310 (50%), Gaps = 6/310 (1%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+ P +  +N+++  LC   K+  A  V D+        T +++  LI        ++E 
Sbjct: 177 GFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEA 236

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
            +L   M   G+ PD+YTY+A+I G+CKE  ++ A  L+  +  +G  P+ + +  L+  
Sbjct: 237 MKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRA 296

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
               G+ D      E  K+V EM + G  P+K+TY+IL+   C+ G ++ A+ + K MI+
Sbjct: 297 FLNQGKWD------EGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE 350

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
           + +  D  ++  LIS  C+ G++  A  ++  M+  G  PD   Y  ++   CKNG+   
Sbjct: 351 KELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQ 410

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
              +  ++R  G  P V +YN +++ L   G    A  ++  M+  G+ PD+ITYN L+ 
Sbjct: 411 ALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLIS 470

Query: 424 GHCKHGNPED 433
             C+ G  E+
Sbjct: 471 CLCRDGLVEE 480



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 155/318 (48%), Gaps = 10/318 (3%)

Query: 114 LGFYLEILDY----GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           LG  L +LD        P+V  + +L+     EG I +A  + +E   RGL     ++N 
Sbjct: 198 LGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA 257

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I G CK   ++    L + +   G  PDV +Y+ L+     + + D+ E L+ EM  RG
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 317

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG 289
             PN V ++ LI   C+ GRID      EA  ++  M    L PD  +Y  L+   CKEG
Sbjct: 318 CEPNKVTYSILISSLCRFGRID------EAISVLKVMIEKELTPDTYSYDPLISALCKEG 371

Query: 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            L+ A+ I   MI  G   D V +  +++  C+ G   +A  +  ++  +G  P+ ++Y 
Sbjct: 372 RLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYN 431

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            +I      GD      ++  M S G  P   TYN+L++ LC+ G ++ A  LLD M   
Sbjct: 432 TMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQS 491

Query: 410 GVVPDDITYNILLEGHCK 427
           G  P  I+YNI+L G CK
Sbjct: 492 GFRPTVISYNIVLLGLCK 509



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 132/318 (41%), Gaps = 24/318 (7%)

Query: 7   LHAYSTMVHFLVAHKMHSQARDLLHLIVSK------------------KGMGSSASLFAS 48
           ++ Y+ ++  +    M  +A +L+  + SK                  +G         +
Sbjct: 252 MYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVA 311

Query: 49  ILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108
            + +RG     +    L+      G +D+AI   +++ +            LI  + +  
Sbjct: 312 EMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEG 371

Query: 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168
              + +G    ++  G  P +  +N ++  LCK G    A  +F++    G      S+N
Sbjct: 372 RLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYN 431

Query: 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
           T+I+      +      +   M   G+ PD  TY++LI+ LC++  +++A  LL +M + 
Sbjct: 432 TMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQS 491

Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
           G  P  + +  ++ G CK  RID      +A  +  EM   G  P++ TY +L++G    
Sbjct: 492 GFRPTVISYNIVLLGLCKVRRID------DAIGMFAEMIEKGCRPNETTYILLIEGIGFA 545

Query: 289 GDLESALDIRKEMIKRGI 306
           G    A+++   +  R +
Sbjct: 546 GWRTEAMELANSLFSRDV 563



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P+V  +N ++  L   G    A  +      +G+    +++N+LI+  C+   ++E 
Sbjct: 422 GCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEA 481

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L   ME SG RP V +Y+ ++ GLCK  R+DDA  +  EM E+G  PN+  +  LI+G
Sbjct: 482 IGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEG 541

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
                 I  AG   EA ++ + + +  +        I  D F +       LD+ KE+
Sbjct: 542 ------IGFAGWRTEAMELANSLFSRDV--------ISQDSFKRLNKTFPMLDVYKEL 585


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 169/312 (54%), Gaps = 21/312 (6%)

Query: 156 GKRGLHA---------TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           G+RG  A         TAV++N+LI+G CKA+   E + L   M  SG  PD++TY+ LI
Sbjct: 37  GRRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 96

Query: 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
            G CK  + DDA  +  ++  RG  P+ V ++ LIDG CK GR      +KEA  +   M
Sbjct: 97  TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR------LKEAIDLFGRM 150

Query: 267 CTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325
             +G   P+ +TY  L+ GFC+ G ++ A+++ + M + G   D V +T L++GFC+  +
Sbjct: 151 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 210

Query: 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385
           + +A  +L +M + GL P+  T+T ++D  C+         +L EMR     P V TYN 
Sbjct: 211 LDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 270

Query: 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KG 442
           +++G C+  QL+ A   +  + ++   P+ +++NI++ G CK     +  +L  E   + 
Sbjct: 271 ILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 328

Query: 443 LVSDYACYTSLV 454
              D   YT+++
Sbjct: 329 CNPDVVMYTTVI 340



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 173/333 (51%), Gaps = 15/333 (4%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P+   +N L+  LCK  +  +A  + +E    G      ++ TLI G CK+K  D+  R+
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHC 245
              +   G RPDV TYS LI+GLCKE RL +A  L   M + G   PN V + +LI G C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305
           + G++D      EA  +++ M   G +PD +TYT L++GFCK   L+ A D+  +M ++G
Sbjct: 172 RMGKMD------EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 225

Query: 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365
           +  + V FT+L+ G CR  ++ +A  +L EM +    P   TY  ++D +C+    +   
Sbjct: 226 LTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 366 R-LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           + +L+EM      P V ++N ++ GLCK  +   A  L++        PD + Y  +++ 
Sbjct: 286 KFMLEEMDCP---PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDV 342

Query: 425 HCKHGNPED----FDKLQSEKGLVSDYACYTSL 453
            C+    ++    + K+  E G + +   Y++ 
Sbjct: 343 LCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 14/307 (4%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P ++ +  L+   CK  K  DA  VF++   RG     V+++ LI+G CK  
Sbjct: 79  EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEG 138

Query: 179 NLDEGFRL--KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
            L E   L  + +  GS M P+  TY++LI+G C+  ++D+A  LL  M E G +P+ V 
Sbjct: 139 RLKEAIDLFGRMIKSGSCM-PNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVT 197

Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
           +TTL++G CK  R+D A D+      +++M   GL P+ +T+T L+DG C+E  L  A+ 
Sbjct: 198 YTTLMNGFCKLARLDDAYDL------LNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVH 251

Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER-MLREMLKVGLKPDDATYTMVIDCF 355
           I  EM ++        +  ++ G+CR  ++ EA + ML EM      P+  ++ ++I   
Sbjct: 252 ILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEM---DCPPNVVSFNIMIRGL 308

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML-DLGVVPD 414
           CK   +     L++E R     P V  Y  +++ LC+  ++  A  +   ML + G +P+
Sbjct: 309 CKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPN 368

Query: 415 DITYNIL 421
            ITY+  
Sbjct: 369 SITYSTF 375



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 169/352 (48%), Gaps = 39/352 (11%)

Query: 6   TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDAL 65
           T   Y++++  L   +  S+A DLL  +V                        G + D  
Sbjct: 53  TAVTYNSLISGLCKAERASEAYDLLEEMVYS----------------------GCIPDIF 90

Query: 66  MIVYVDLGFL-----DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
               +  GF      DDA++ F  L    FR       CLID + +       +  +  +
Sbjct: 91  TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 150

Query: 121 LDYGYS-PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +  G   P+   +N L+   C+ GK+ +A  + +   + G     V++ TL+NG CK   
Sbjct: 151 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 210

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD+ + L + M   G+ P+V T+++L++GLC+ENRL DA  +L EM  +  +P    + T
Sbjct: 211 LDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 270

Query: 240 LIDGHCKNGRIDMAGDMKEARK-IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           ++DG+C+         ++EARK +++EM      P+ +++ I++ G CK      A+++ 
Sbjct: 271 ILDGYCR------VNQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELV 321

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML-KVGLKPDDATYT 349
           +E  +R    D V +T +I   CR  KV EA R+ R+ML + G  P+  TY+
Sbjct: 322 EEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYS 373


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 21/343 (6%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE-FGKRGLHATAVSFNTLINGHCKAKNL 180
           + G SPSV  FN L+  + K G+   A+ +FDE     G+     +FN LI G C    +
Sbjct: 193 EIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMV 252

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPNDVIFT 238
           DEGF     M      PDV TY+ L++GLC+  ++  A  ++  M ++   L+PN V +T
Sbjct: 253 DEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYT 312

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G+C      M  DM EA  ++ EM + GL P+KITY  L+ G C+   L+   +I 
Sbjct: 313 TLIRGYC------MKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEIL 366

Query: 299 KEMI-KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           + M+   G   D      LI   C  GK+ EA  +  +M ++ ++PD ATY++++   C+
Sbjct: 367 EGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQ 426

Query: 358 NGDTKTGFRLLKEMRSD-------GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            GD +       E+          G  P V  YN +   LC +G+ K A  +   ++  G
Sbjct: 427 RGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 486

Query: 411 VVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
              D  +Y  L+ GHC+ G PE   D   L   +  V D   Y
Sbjct: 487 -TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETY 528



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 45/411 (10%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            ++L+  Y   G   ++I+ F+ +++            L+  +++    ++    + E+L
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 122 D-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           D YG +P  Y FN+L+   C    + +    F E  +       V++NTL++G C+A  +
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 181 DEGFRLKS--VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                +    V +   + P+V TY+ LI G C +  + +A  LL EM  RGL PN + + 
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347

Query: 239 TLIDGHCKNGRID--------MAGD----------------------MKEARKIVDEMCT 268
           TLI G C+  ++D        M GD                      ++EA  + ++M  
Sbjct: 348 TLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSE 407

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF-------C 321
             + PD  TY++L+   C+ GD   A +   E+ ++ I L +V    L++ +       C
Sbjct: 408 LRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLC 467

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             GK  +AER+ R+++K G + D  +Y  +I   C+ G  + GF LL  M     +P  E
Sbjct: 468 SNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAE 526

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN----ILLEGHCKH 428
           TY  +++GL K G    A+  L+ ML    +P    ++     L+E  C H
Sbjct: 527 TYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAH 577



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 155/391 (39%), Gaps = 65/391 (16%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLIN 172
           L    E++  G  P+   +N L+  LC+  K+   + + +   G  G      + NTLI 
Sbjct: 328 LSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIK 387

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE----------NRLDDAELLL 222
            HC    L+E F +   M    ++PD  TYS L+  LC+           + L + E+LL
Sbjct: 388 AHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILL 447

Query: 223 HE----------------MCERGLT---------------PNDVIFTTLIDGHCKNGRID 251
           H+                +C  G T                +   + TLI GHC+ G  +
Sbjct: 448 HDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPE 507

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV 311
              D+      +  M      PD  TY +++DG  K+GD   A    ++M+K        
Sbjct: 508 AGFDL------LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTA 561

Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371
            F ++++     G   E+  +++ ML+  ++ +    T  +    K+G     F  +  +
Sbjct: 562 IFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLL 621

Query: 372 RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK-HGN 430
             +G+L  +E    L++ LC+  +L  A  +L   L+     D    + ++ G CK H  
Sbjct: 622 YENGYLVKME---ELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKV 678

Query: 431 PEDFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
            E F             A Y  LV K  ++R
Sbjct: 679 SEAF-------------ALYYELVEKGMQHR 696



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 123/300 (41%), Gaps = 26/300 (8%)

Query: 119 EIL--DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
           EIL  D G  P V  +N +   LC  GK K A+ VF +  KRG      S+ TLI GHC+
Sbjct: 444 EILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP-SYKTLILGHCR 502

Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
               + GF L  +M      PD  TY  +I+GL K+     A   L +M +    P   I
Sbjct: 503 EGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAI 562

Query: 237 F----TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292
           F      L++  C +    +   M E R+I         N D  T+T+ L    K G  +
Sbjct: 563 FHSILAALVEKGCAHESASLVKLMLE-RRIRQ-------NIDLSTHTVRL--LYKSGLQD 612

Query: 293 SALDIRKEMIKRGIELDN---VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349
            A       +  G+  +N   V    L+S  C+  K++EA++ML   L+     D    +
Sbjct: 613 KAF------MTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCS 666

Query: 350 MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409
            VI   CK       F L  E+   G    +     L   L   G+L  A  +   M ++
Sbjct: 667 TVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKMPEV 726



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +K  D  +  +I  +   G  +   ++ K M+  G  P+V T+N+L++ + K G+   A
Sbjct: 160 AVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMA 219

Query: 400 NMLLDTMLD-LGVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
             L D MLD  GV PD  T+NIL+ G C +   ++   F K  S      D   Y +LV
Sbjct: 220 KQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLV 278


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 163/306 (53%), Gaps = 6/306 (1%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E+L  G  P ++ +N ++  +CKEG +  A  +      +G     +S+N L+       
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
             +EG +L + M      P+V TYS LI  LC++ ++++A  LL  M E+GLTP+   + 
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYD 372

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            LI   C+ GR+D+A +  E       M ++G  PD + Y  +L   CK G  + AL+I 
Sbjct: 373 PLIAAFCREGRLDVAIEFLET------MISDGCLPDIVNYNTVLATLCKNGKADQALEIF 426

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
            ++ + G   ++ ++  + S     G  + A  M+ EM+  G+ PD+ TY  +I C C+ 
Sbjct: 427 GKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G     F LL +MRS    P+V TYN ++ G CK  ++++A  +L++M+  G  P++ TY
Sbjct: 487 GMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546

Query: 419 NILLEG 424
            +L+EG
Sbjct: 547 TVLIEG 552



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 182/399 (45%), Gaps = 36/399 (9%)

Query: 65  LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
           L+   V  G+  D I C +L+ K +F +               N+P       +EIL+  
Sbjct: 111 LLETMVRKGYNPDVILCTKLI-KGFFTL--------------RNIPKAVR--VMEILEKF 153

Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
             P V+ +N L++  CK  +I DA  V D    +      V++N +I   C    LD   
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLAL 213

Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
           ++ + +     +P V TY+ LI     E  +D+A  L+ EM  RGL P+   + T+I G 
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273

Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
           CK G +D A +M      V  +   G  PD I+Y ILL     +G  E    +  +M   
Sbjct: 274 CKEGMVDRAFEM------VRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327

Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
             + + V ++ LI+  CR GK+ EA  +L+ M + GL PD  +Y  +I  FC+ G     
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
              L+ M SDG LP +  YN ++  LCK+G+   A  +   + ++G  P+  +YN +   
Sbjct: 388 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447

Query: 425 HCKHGNPEDFDKLQS--------EKGLVSDYACYTSLVS 455
               G     DK+++          G+  D   Y S++S
Sbjct: 448 LWSSG-----DKIRALHMILEMMSNGIDPDEITYNSMIS 481



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 179/371 (48%), Gaps = 6/371 (1%)

Query: 63  DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122
           +AL+  +  +  +DDA +    +R   F         +I  +       + L    ++L 
Sbjct: 162 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLS 221

Query: 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE 182
               P+V  + +L+     EG + +A  + DE   RGL     ++NT+I G CK   +D 
Sbjct: 222 DNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDR 281

Query: 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242
            F +   +E  G  PDV +Y+ L+  L  + + ++ E L+ +M      PN V ++ LI 
Sbjct: 282 AFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILIT 341

Query: 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302
             C++G+I+      EA  ++  M   GL PD  +Y  L+  FC+EG L+ A++  + MI
Sbjct: 342 TLCRDGKIE------EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362
             G   D V +  +++  C+ GK  +A  +  ++ +VG  P+ ++Y  +      +GD  
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455

Query: 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422
               ++ EM S+G  P   TYN++++ LC+ G +  A  LL  M      P  +TYNI+L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515

Query: 423 EGHCKHGNPED 433
            G CK    ED
Sbjct: 516 LGFCKAHRIED 526



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 73/371 (19%)

Query: 157 KRGLHATAVSFN-----TLINGHCKAKNLDEGFRLKSVMEGSGM---------------- 195
           +R  H+ ++ F       + +  C++ N  E   L   M   G                 
Sbjct: 77  RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136

Query: 196 ------------------RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
                             +PDV+ Y+ALING CK NR+DDA  +L  M  +  +P+ V +
Sbjct: 137 LRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196

Query: 238 TTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCT 268
             +I   C  G++D+A                             G + EA K++DEM +
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
            GL PD  TY  ++ G CKEG ++ A ++ + +  +G E D +++  L+      GK  E
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316

Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
            E+++ +M      P+  TY+++I   C++G  +    LLK M+  G  P   +Y+ L+ 
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376

Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP----EDFDKLQSEKGLV 444
             C+ G+L  A   L+TM+  G +PD + YN +L   CK+G      E F KL  E G  
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL-GEVGCS 435

Query: 445 SDYACYTSLVS 455
            + + Y ++ S
Sbjct: 436 PNSSSYNTMFS 446



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 6/291 (2%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G  P V  +N+L+  L  +GK ++ + +  +          V+++ LI   C+   ++E 
Sbjct: 293 GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 352

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
             L  +M+  G+ PD Y+Y  LI   C+E RLD A   L  M   G  P+ V + T++  
Sbjct: 353 MNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLAT 412

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
            CKNG+ D      +A +I  ++   G +P+  +Y  +       GD   AL +  EM+ 
Sbjct: 413 LCKNGKAD------QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMS 466

Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
            GI+ D + + ++IS  CR G V EA  +L +M      P   TY +V+  FCK    + 
Sbjct: 467 NGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIED 526

Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
              +L+ M  +G  P   TY  L+ G+   G    A  L + ++ +  + +
Sbjct: 527 AINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISE 577



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
           L   LE++  G  P    +N ++  LC+EG + +A  +  +      H + V++N ++ G
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLG 517

Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209
            CKA  +++   +   M G+G RP+  TY+ LI G+
Sbjct: 518 FCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 208/426 (48%), Gaps = 28/426 (6%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           G   S       ++ +G H    +  +++ VY  +G  + A++ F       +RI   GC
Sbjct: 89  GQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMF-------YRIKEFGC 141

Query: 98  -------RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150
                    ++D ++  N   +    Y ++   G+ P+V+ +NVL+  LCK  K+  A+ 
Sbjct: 142 DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKK 201

Query: 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210
           +  E   +G    AVS+ T+I+  C+   + EG +L    E     P V  Y+ALINGLC
Sbjct: 202 LLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFE-----PVVSVYNALINGLC 256

Query: 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270
           KE        L+ EM E+G++PN + ++TLI+    +G+I++A  +      + +M   G
Sbjct: 257 KERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSL------LAQMLKRG 310

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGGKVVEA 329
            +P+  T + L+ G    G    ALD+  +MI+  G++ + VA+  L+ GFC  G + +A
Sbjct: 311 CHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKA 370

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
             +   M ++G  P+  TY  +I+ F K G  +    +  +M + G  P V  Y +++  
Sbjct: 371 VSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEA 430

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYAC 449
           LC+H + K A  L++ M      P   T+N  ++G C  G  +  +K+  +  +   Y C
Sbjct: 431 LCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQ--MEQQYRC 488

Query: 450 YTSLVS 455
             ++V+
Sbjct: 489 PPNIVT 494



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 194/410 (47%), Gaps = 62/410 (15%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILD---YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156
           ++ R+ + +   + L F+  I +   + ++P    F V++ KL  +G++   Q +  +  
Sbjct: 45  VLKRLRQESCVPLALHFFKSIANSNLFKHTP--LTFEVMIRKLAMDGQVDSVQYLLQQMK 102

Query: 157 KRGLHATAVSFNTLINGHCKA----KNLDEGFRLKSV----------------------- 189
            +G H +   F ++I+ + +     + ++  +R+K                         
Sbjct: 103 LQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQ 162

Query: 190 --------MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
                   M+  G  P+V+TY+ L+  LCK N++D A+ LL EM  +G  PN V +TT+I
Sbjct: 163 MIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVI 222

Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
              C+ G +      KE R++ +        P    Y  L++G CKE D +  +++  EM
Sbjct: 223 SSMCEVGMV------KEGRQLAER-----FEPVVSVYNALINGLCKERDYKGGVELMSEM 271

Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY-TMVIDCFCKNGD 360
           +++GI  + ++++ LI+     G++  A  +L +MLK G  P+  T  ++V  CF + G 
Sbjct: 272 VEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVR-GT 330

Query: 361 TKTGFRLLKEM-RSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
           T     +  +M R  G  P V  YN L+ G C HG +  A  +   M ++G  P+  TY 
Sbjct: 331 TFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYG 390

Query: 420 ILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS---KSSKYRQ 462
            L+ G  K G+ E     ++K+ +  G   +   YTS+V    + SK+++
Sbjct: 391 SLINGFTKRGSLEGAVYIWNKMLT-SGCCPNVVVYTSMVEALCRHSKFKE 439



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 11/298 (3%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           I  +G  P+V  +N L+   C  G I  A  VF    + G      ++ +LING  K  +
Sbjct: 342 IRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGS 401

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           L+    + + M  SG  P+V  Y++++  LC+ ++  +AE L+  M +    P+   F  
Sbjct: 402 LEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNA 461

Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKITYTILLDGFCKEGDLESALDIR 298
            I G C  GR+D A       K+  +M       P+ +TY  LLDG  K   +E A  + 
Sbjct: 462 FIKGLCDAGRLDWA------EKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLT 515

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           +E+  RG+E     +  L+ G C  G    A +++ +M+  G  PD+ T  M+I  +CK 
Sbjct: 516 REIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQ 575

Query: 359 GDTKTGFRLLKEMRSDGH---LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
           G  +   ++L ++ S G     P V +Y  ++ GLC+    ++  +L + M+   ++P
Sbjct: 576 GKAERAVQML-DLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMISERIIP 632



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 11/274 (4%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            +  +L + + G SP++  +  L++   K G ++ A  ++++    G     V + +++ 
Sbjct: 370 AVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVE 429

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLT 231
             C+     E   L  +M      P V T++A I GLC   RLD AE +  +M ++    
Sbjct: 430 ALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCP 489

Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291
           PN V +  L+DG  K  RI+      EA  +  E+   G+     TY  LL G C  G  
Sbjct: 490 PNIVTYNELLDGLAKANRIE------EAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLP 543

Query: 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATY 348
             AL +  +M+  G   D +    +I  +C+ GK   A +ML +++  G    +PD  +Y
Sbjct: 544 GIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQML-DLVSCGRRKWRPDVISY 602

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
           T VI   C++   + G  L + M S+  +P + +
Sbjct: 603 TNVIWGLCRSNCREDGVILFERMISERIIPILRS 636



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 22/228 (9%)

Query: 9   AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV 68
            Y++MV  L  H    +A  L+  I+SK+    S   F + ++       GL        
Sbjct: 423 VYTSMVEALCRHSKFKEAESLIE-IMSKENCAPSVPTFNAFIK-------GLC------- 467

Query: 69  YVDLGFLDDAIQCFRLLRKHYFRIPARGCRC--LIDRMMRTNLPTVTLGFYLEILDYGYS 126
             D G LD A + FR + + Y R P        L+D + + N      G   EI   G  
Sbjct: 468 --DAGRLDWAEKVFRQMEQQY-RCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 524

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
            S   +N L+H  C  G    A  +  +    G     ++ N +I  +CK    +   ++
Sbjct: 525 WSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQM 584

Query: 187 KSVMEGS--GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
             ++       RPDV +Y+ +I GLC+ N  +D  +L   M    + P
Sbjct: 585 LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMISERIIP 632


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 173/350 (49%), Gaps = 13/350 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P    ++ ++  LC   K++ A ++F E    G+     ++  LI+  CKA 
Sbjct: 213 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 272

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++   L   M   G  P V TY+ALI+   K  ++  A  + H M + G  PNDV + 
Sbjct: 273 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 332

Query: 239 TLIDGHCKNGRIDMA--------GDMKEARKIVDEMCTN--GLNPDKITYTILLDGFCKE 288
            L+DG CK G I  A        G    A       C +   L P+ +TY  L+DG CK 
Sbjct: 333 ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKA 392

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             ++ A ++   M+  G E +++ + ALI GFC+ GK+  A+ +  +M K G  P   TY
Sbjct: 393 HKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTY 452

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T +ID   K+G      ++L +M  D   P V TY A+++GLC+ G+ + A  LL  M +
Sbjct: 453 TSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEE 512

Query: 409 LGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
            G  P+ +TY  L++G  K G  +   D     S KG   +Y  Y  L++
Sbjct: 513 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLIN 562



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 167/322 (51%), Gaps = 22/322 (6%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G +P VY + +L+   CK G I+ AQ +F+E    G   T V++  LI+ + KAK + + 
Sbjct: 253 GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQA 312

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRL--------------DDAELLLHEMCE-- 227
             +   M  +G RP+  TY AL++GLCK   +              D A+   +  CE  
Sbjct: 313 NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDR 372

Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
             L PN V +  L+DG CK  ++D       A +++D M ++G  P+ I Y  L+DGFCK
Sbjct: 373 HTLAPNVVTYGALVDGLCKAHKVD------HAHELLDAMLSSGCEPNHIVYDALIDGFCK 426

Query: 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347
            G ++SA ++  +M K G       +T+LI    + G++  A ++L +MLK    P+  T
Sbjct: 427 AGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVT 486

Query: 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407
           YT +ID  C+ G+++   +LL  M   G  P V TY AL++GL K G++  +  L   M 
Sbjct: 487 YTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMS 546

Query: 408 DLGVVPDDITYNILLEGHCKHG 429
             G  P+ +TY +L+   C  G
Sbjct: 547 RKGCSPNYVTYRVLINHLCAAG 568



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 156/323 (48%), Gaps = 22/323 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +  L       + E+   G SP+V  +  L+H   K  ++  A  +F      G
Sbjct: 264 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 323

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG----------------MRPDVYTYS 203
                V++  L++G CKA N+ + F + + + G+                 + P+V TY 
Sbjct: 324 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 383

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           AL++GLCK +++D A  LL  M   G  PN +++  LIDG CK G+ID       A+++ 
Sbjct: 384 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID------SAQEVF 437

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            +M   G  P   TYT L+D   K+G L+ A+ +  +M+K     + V +TA+I G CR 
Sbjct: 438 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 497

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A ++L  M + G  P+  TYT +ID   K G       L  +M   G  P   TY
Sbjct: 498 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTY 557

Query: 384 NALMNGLCKHGQLKNANMLLDTM 406
             L+N LC  G L  A +LL  M
Sbjct: 558 RVLINHLCAAGLLDKARLLLGEM 580



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 151/348 (43%), Gaps = 50/348 (14%)

Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
           G+    +      H LCKEG+  DA    D   +       V    +I+G  +A   DE 
Sbjct: 5   GFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTHMISGLMEASYFDEA 61

Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
                 M  +   P+V TY  L++G  K+ +L   + +++ M   G  PN  +F +L+  
Sbjct: 62  MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHS 121

Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE--------------- 288
           +C         D   A K+++ M T G  P  + Y I +   C +               
Sbjct: 122 YCNEK------DYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKI 175

Query: 289 --------------------------GDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
                                     G  + A  + KEM+++G   D   ++ +I+  C 
Sbjct: 176 YGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCH 235

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
             KV +A  + +EM  VG+ PD  TYT++ID FCK G  +    L +EMRS G  P V T
Sbjct: 236 ATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT 295

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
           Y AL++   K  Q+  AN +   M+D G  P+D+TY  L++G CK GN
Sbjct: 296 YTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 343



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 162/348 (46%), Gaps = 48/348 (13%)

Query: 116 FYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           FY    D +  +P+V  +  L+  LCK  K+  A  + D     G     + ++ LI+G 
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 424

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CKA  +D    +   M   G  P V+TY++LI+ + K+ RLD A  +L +M +   TPN 
Sbjct: 425 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 484

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +T +IDG C+       G+ ++A K++  M   G +P+ +TYT L+DG  K G ++ +
Sbjct: 485 VTYTAMIDGLCR------IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLS 538

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGG------------------KVVEAER----- 331
           LD+  +M ++G   + V +  LI+  C  G                  K ++  R     
Sbjct: 539 LDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQG 598

Query: 332 ----------MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-V 380
                     +L EM   G  P    Y M+IDCF K G  +    L KEM     +P+ V
Sbjct: 599 FSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMM---EVPSSV 655

Query: 381 ET----YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +T    Y +L+  LC   Q++ A  L   M   G VP+   +  L++G
Sbjct: 656 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 703



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 176/439 (40%), Gaps = 72/439 (16%)

Query: 84  LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143
           ++ +  F++    C  +I  +M  +     + F   +      P+V  +  L+    K+ 
Sbjct: 32  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 91

Query: 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203
           ++   + + +     G +     FN+L++ +C  K+    ++L + M   G  P    Y+
Sbjct: 92  QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 151

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA---------G 254
             I  +C + +L   +LL  ++ E+       I+  ++  +C   ++++A         G
Sbjct: 152 IFIGSICGQEKLPSPDLL--DLAEK-------IYGEMLAANCVLNKVNVANFARCLCGVG 202

Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT 314
              +A +++ EM   G  PD  TY+ ++   C    +E A  + +EM   G+  D   +T
Sbjct: 203 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 262

Query: 315 ALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374
            LI  FC+ G + +A+ +  EM  VG  P   TYT +I  + K         +   M   
Sbjct: 263 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 322

Query: 375 GHLPAVETYNALMNGLCKHGQLK------------------------------------- 397
           G  P   TY AL++GLCK G +                                      
Sbjct: 323 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 382

Query: 398 --------------NANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK--LQSEK 441
                         +A+ LLD ML  G  P+ I Y+ L++G CK G  +   +  LQ  K
Sbjct: 383 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 442

Query: 442 -GLVSDYACYTSLVSKSSK 459
            G +     YTSL+ +  K
Sbjct: 443 CGYLPSVHTYTSLIDRMFK 461



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 8/234 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + R       L     + + G SP+V  +  L+  L K GKI  +  +F +  ++G
Sbjct: 490 MIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG 549

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  LIN  C A  LD+   L   M+ +     +  Y   I G  K      + 
Sbjct: 550 CSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FIASL 607

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-KEARKIVDEMCTNGLNPDKITY 278
            +L EM   G  P   ++  LID   K GR+++A ++ KE  ++      + +  D   Y
Sbjct: 608 GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEV-----PSSVKTDNDMY 662

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
             L+   C    +E A  +  EM +RG   +   F  LI G     K  EA ++
Sbjct: 663 ASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 716



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 5/162 (3%)

Query: 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR-GIELDNVAFTALISGFCRGG 324
           M  +G   D+ T        CKEG    ALD    MI+R   +LD V  T +ISG     
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALD----MIEREDFKLDTVLCTHMISGLMEAS 56

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
              EA   L  M      P+  TY  ++  F K        R++  M ++G  P    +N
Sbjct: 57  YFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFN 116

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           +L++  C       A  LL+ M   G  P  + YNI +   C
Sbjct: 117 SLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSIC 158



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 4/160 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G LD A      +++ Y+    +G RC I    ++ +   +LG   E+  YG  P   V+
Sbjct: 568 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFI--ASLGILEEMESYGTVPIAPVY 625

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGK--RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +L+    K G+++ A  +  E  +    +      + +LI   C A  ++E FRL S M
Sbjct: 626 GMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 685

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              G  P++  +  LI GL +  + D+A  L + +C  G+
Sbjct: 686 TRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 725


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 173/350 (49%), Gaps = 13/350 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G+ P    ++ ++  LC   K++ A ++F E    G+     ++  LI+  CKA 
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            +++   L   M   G  P V TY+ALI+   K  ++  A  + H M + G  PNDV + 
Sbjct: 338 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397

Query: 239 TLIDGHCKNGRIDMA--------GDMKEARKIVDEMCTN--GLNPDKITYTILLDGFCKE 288
            L+DG CK G I  A        G    A       C +   L P+ +TY  L+DG CK 
Sbjct: 398 ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKA 457

Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
             ++ A ++   M+  G E +++ + ALI GFC+ GK+  A+ +  +M K G  P   TY
Sbjct: 458 HKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTY 517

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
           T +ID   K+G      ++L +M  D   P V TY A+++GLC+ G+ + A  LL  M +
Sbjct: 518 TSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEE 577

Query: 409 LGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLVS 455
            G  P+ +TY  L++G  K G  +   D     S KG   +Y  Y  L++
Sbjct: 578 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLIN 627



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 170/330 (51%), Gaps = 22/330 (6%)

Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
            + E+   G +P VY + +L+   CK G I+ AQ +F+E    G   T V++  LI+ + 
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369

Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL--------------DDAELL 221
           KAK + +   +   M  +G RP+  TY AL++GLCK   +              D A+  
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 222 LHEMCE--RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +  CE    L PN V +  L+DG CK  ++D       A +++D M ++G  P+ I Y 
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVD------HAHELLDAMLSSGCEPNHIVYD 483

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L+DGFCK G ++SA ++  +M K G       +T+LI    + G++  A ++L +MLK 
Sbjct: 484 ALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD 543

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
              P+  TYT +ID  C+ G+++   +LL  M   G  P V TY AL++GL K G++  +
Sbjct: 544 SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLS 603

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
             L   M   G  P+ +TY +L+   C  G
Sbjct: 604 LDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 156/323 (48%), Gaps = 22/323 (6%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LID   +  L       + E+   G SP+V  +  L+H   K  ++  A  +F      G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG----------------MRPDVYTYS 203
                V++  L++G CKA N+ + F + + + G+                 + P+V TY 
Sbjct: 389 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 448

Query: 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263
           AL++GLCK +++D A  LL  M   G  PN +++  LIDG CK G+ID       A+++ 
Sbjct: 449 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID------SAQEVF 502

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
            +M   G  P   TYT L+D   K+G L+ A+ +  +M+K     + V +TA+I G CR 
Sbjct: 503 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 562

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G+  +A ++L  M + G  P+  TYT +ID   K G       L  +M   G  P   TY
Sbjct: 563 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTY 622

Query: 384 NALMNGLCKHGQLKNANMLLDTM 406
             L+N LC  G L  A +LL  M
Sbjct: 623 RVLINHLCAAGLLDKARLLLGEM 645



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 159/362 (43%), Gaps = 52/362 (14%)

Query: 112 VTLGFYL--EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
           V LGF +  E+ + G+    +      H LCKEG+  DA    D   +       V    
Sbjct: 56  VDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTH 112

Query: 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229
           +I+G  +A   DE       M  +   P+V TY  L++G  K+ +L   + +++ M   G
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 172

Query: 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE- 288
             PN  +F +L+  +C         D   A K+++ M T G  P  + Y I +   C + 
Sbjct: 173 CNPNPSLFNSLVHSYCNEK------DYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 226

Query: 289 ----------------------------------------GDLESALDIRKEMIKRGIEL 308
                                                   G  + A  + KEM+++G   
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 286

Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
           D   ++ +I+  C   KV +A  + +EM  VG+ PD  TYT++ID FCK G  +    L 
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
           +EMRS G  P V TY AL++   K  Q+  AN +   M+D G  P+D+TY  L++G CK 
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 429 GN 430
           GN
Sbjct: 407 GN 408



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 162/348 (46%), Gaps = 48/348 (13%)

Query: 116 FYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           FY    D +  +P+V  +  L+  LCK  K+  A  + D     G     + ++ LI+G 
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CKA  +D    +   M   G  P V+TY++LI+ + K+ RLD A  +L +M +   TPN 
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V +T +IDG C+       G+ ++A K++  M   G +P+ +TYT L+DG  K G ++ +
Sbjct: 550 VTYTAMIDGLCR------IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLS 603

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGG------------------KVVEAER----- 331
           LD+  +M ++G   + V +  LI+  C  G                  K ++  R     
Sbjct: 604 LDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQG 663

Query: 332 ----------MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-V 380
                     +L EM   G  P    Y M+IDCF K G  +    L KEM     +P+ V
Sbjct: 664 FSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMM---EVPSSV 720

Query: 381 ET----YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
           +T    Y +L+  LC   Q++ A  L   M   G VP+   +  L++G
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 768



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 140/357 (39%), Gaps = 50/357 (14%)

Query: 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALI 206
           D++    +FG R    + V++N L+     A  +D GFR++  M  SG   D +T     
Sbjct: 26  DSEDPLKDFGYR---PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFA 82

Query: 207 NGLCKENR--------------------------------LDDAELLLHEMCERGLTPND 234
           + LCKE R                                 D+A   LH M      PN 
Sbjct: 83  HALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNV 142

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V + TL+ G  K  ++         ++I++ M T G NP+   +  L+  +C E D   A
Sbjct: 143 VTYRTLLSGFLKKKQLGW------CKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYA 196

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE------AERMLREMLKVGLKPDDATY 348
             +   M   G     V +   I   C   K+        AE++  EML      +    
Sbjct: 197 YKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNV 256

Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
                C C  G     F+L+KEM   G +P   TY+ ++  LC   +++ A +L   M  
Sbjct: 257 ANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM 316

Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVSKSSKYRQ 462
           +GV PD  TY IL++  CK G  E    L  E    G       YT+L+    K +Q
Sbjct: 317 VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 373



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 8/234 (3%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + R       L     + + G SP+V  +  L+  L K GKI  +  +F +  ++G
Sbjct: 555 MIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG 614

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V++  LIN  C A  LD+   L   M+ +     +  Y   I G  K      + 
Sbjct: 615 CSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FIASL 672

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDM-KEARKIVDEMCTNGLNPDKITY 278
            +L EM   G  P   ++  LID   K GR+++A ++ KE  ++      + +  D   Y
Sbjct: 673 GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEV-----PSSVKTDNDMY 727

Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
             L+   C    +E A  +  EM +RG   +   F  LI G     K  EA ++
Sbjct: 728 ASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 4/160 (2%)

Query: 73  GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
           G LD A      +++ Y+    +G RC I    ++ +   +LG   E+  YG  P   V+
Sbjct: 633 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFI--ASLGILEEMESYGTVPIAPVY 690

Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGK--RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190
            +L+    K G+++ A  +  E  +    +      + +LI   C A  ++E FRL S M
Sbjct: 691 GMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 750

Query: 191 EGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230
              G  P++  +  LI GL +  + D+A  L + +C  G+
Sbjct: 751 TRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 790


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 21/343 (6%)

Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE-FGKRGLHATAVSFNTLINGHCKAKNL 180
           + G SPSV  FN L+  + K G+   A+ +FDE     G+     +FN LI G C    +
Sbjct: 193 EIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMV 252

Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG--LTPNDVIFT 238
           DEGF     M      PDV TY+ L++GLC+  ++  A  ++  M ++   L+PN V +T
Sbjct: 253 DEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYT 312

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
           TLI G+C      M  DM EA  ++ EM + GL P+KITY  L+ G C+   L+   +I 
Sbjct: 313 TLIRGYC------MKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEIL 366

Query: 299 KEMI-KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
           + M+   G   D      LI   C  GK+ EA  +  +M ++ ++PD ATY++++   C+
Sbjct: 367 EGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQ 426

Query: 358 NGDTKTGFRLLKEMRSD-------GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410
            GD +       E+          G  P V  YN +   LC +G+ K A  +   ++  G
Sbjct: 427 RGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 486

Query: 411 VVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACY 450
              D  +Y  L+ GHC+ G PE   D   L   +  V D   Y
Sbjct: 487 T-QDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETY 528



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 45/411 (10%)

Query: 62  LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
            ++L+  Y   G   ++I+ F+ +++            L+  +++    ++    + E+L
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 122 D-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
           D YG +P  Y FN+L+   C    + +    F E  +       V++NTL++G C+A  +
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 181 DEGFRLKS--VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
                +    V +   + P+V TY+ LI G C +  + +A  LL EM  RGL PN + + 
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347

Query: 239 TLIDGHCKNGRID--------MAGD----------------------MKEARKIVDEMCT 268
           TLI G C+  ++D        M GD                      ++EA  + ++M  
Sbjct: 348 TLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSE 407

Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF-------C 321
             + PD  TY++L+   C+ GD   A +   E+ ++ I L +V    L++ +       C
Sbjct: 408 LRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLC 467

Query: 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381
             GK  +AER+ R+++K G + D  +Y  +I   C+ G  + GF LL  M     +P  E
Sbjct: 468 SNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAE 526

Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN----ILLEGHCKH 428
           TY  +++GL K G    A+  L+ ML    +P    ++     L+E  C H
Sbjct: 527 TYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAH 577



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 137/377 (36%), Gaps = 87/377 (23%)

Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF-GKRGLHATAVSFNTLIN 172
           L    E++  G  P+   +N L+  LC+  K+   + + +   G  G      + NTLI 
Sbjct: 328 LSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIK 387

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE----------NRLDDAELLL 222
            HC    L+E F +   M    ++PD  TYS L+  LC+           + L + E+LL
Sbjct: 388 AHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILL 447

Query: 223 HE----------------MCERGLT---------------PNDVIFTTLIDGHCKNGRID 251
           H+                +C  G T                +   + TLI GHC+ G  +
Sbjct: 448 HDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPE 507

Query: 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL-------------------- 291
              D+      +  M      PD  TY +++DG  K+GD                     
Sbjct: 508 AGFDL------LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTA 561

Query: 292 ----------------ESALDIR---KEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
                           ESA  ++   +  I++ I+L       L+S  C+  K++EA++M
Sbjct: 562 IFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKM 621

Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
           L   L+     D    + VI   CK       F L  E+   G    +     L   L  
Sbjct: 622 LLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEA 681

Query: 393 HGQLKNANMLLDTMLDL 409
            G+L  A  +   M ++
Sbjct: 682 EGRLNEAKFVSKKMPEV 698



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
            +K  D  +  +I  +   G  +   ++ K M+  G  P+V T+N+L++ + K G+   A
Sbjct: 160 AVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMA 219

Query: 400 NMLLDTMLDL-GVVPDDITYNILLEGHCKHGNPED---FDKLQSEKGLVSDYACYTSLV 454
             L D MLD  GV PD  T+NIL+ G C +   ++   F K  S      D   Y +LV
Sbjct: 220 KQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLV 278


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 182/345 (52%), Gaps = 11/345 (3%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
           E++  G  P++  F+ L+  LC+ G  +    V  +  + G       + T+I+G CK +
Sbjct: 242 EMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEE 301

Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
            L+    + + M   G+ P+V  Y+ L+ GLC  +R ++AE LL EM ++    +DV F 
Sbjct: 302 RLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFN 361

Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
            L+D  C+NG +D         +++++M  +G  PD ITYT +++GFCKEG ++ A+ + 
Sbjct: 362 ILVDFLCQNGLVD------RVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLL 415

Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
           + M   G   + V++T ++ G C   + V+AE ++ +M++ G  P+  T+  +I+  CK 
Sbjct: 416 RSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKK 475

Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
           G  +    LLK+M  +G  P + +Y+ +++GL K G    A  LL+ M+  G+ P+ I Y
Sbjct: 476 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIY 535

Query: 419 NILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVSKSSK 459
           + +       G        F+ +Q +  + SD   Y +++S   K
Sbjct: 536 SSIASALSGEGRINKVIQMFENIQ-DTTVRSDAVLYNAVISSLCK 579



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 183/359 (50%), Gaps = 20/359 (5%)

Query: 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162
           R++R  LP+           +G  P V  +N ++  LC   +    Q + +E    G   
Sbjct: 202 RLLRDLLPS-----------FGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPP 250

Query: 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222
             V+F+TLI   C+    +    + + M   G  PDV  Y+ +I+G+CKE RL+ A  +L
Sbjct: 251 NIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGIL 310

Query: 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
           + M   GL+PN V + TL+ G C   R       +EA  ++ EM       D +T+ IL+
Sbjct: 311 NRMPSYGLSPNVVCYNTLLKGLCSADR------WEEAEGLLAEMFDKDCPLDDVTFNILV 364

Query: 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342
           D  C+ G ++  +++ ++M++ G   D + +T +I+GFC+ G + EA  +LR M   G +
Sbjct: 365 DFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCR 424

Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402
           P+  +YT+V+   C          L+ +M   G  P   T+N L+N LCK G ++ A  L
Sbjct: 425 PNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIEL 484

Query: 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVSKSS 458
           L  ML  G  PD I+Y+ +++G  K GN ++  +L +   +KG+  +   Y+S+ S  S
Sbjct: 485 LKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALS 543



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 161/351 (45%), Gaps = 42/351 (11%)

Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN------ 179
           +P+ Y +  L+  LC  G+I DA  V D+  +RG   T   ++  +   C+A        
Sbjct: 108 APNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVG 167

Query: 180 -----------------------------LDEGFRL-KSVMEGSGMRPDVYTYSALINGL 209
                                        +DE  RL + ++   G  PDV +Y+A++ GL
Sbjct: 168 VLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGL 227

Query: 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269
           C   R    + L+ EM   G  PN V F+TLI   C+NG  +         ++  +M  +
Sbjct: 228 CMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFE------RVHEVHAQMAEH 281

Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
           G  PD   Y  ++DG CKE  LE A  I   M   G+  + V +  L+ G C   +  EA
Sbjct: 282 GCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEA 341

Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389
           E +L EM       DD T+ +++D  C+NG       +L++M   G +P V TY  ++NG
Sbjct: 342 EGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVING 401

Query: 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
            CK G +  A MLL +M   G  P+ ++Y I+L+G C      D ++L S+
Sbjct: 402 FCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQ 452



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 150/298 (50%), Gaps = 6/298 (2%)

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
           G   E+ D         FN+L+  LC+ G +     V ++  + G     +++ T+ING 
Sbjct: 343 GLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGF 402

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CK   +DE   L   M   G RP+  +Y+ ++ GLC   R  DAE L+ +M ++G  PN 
Sbjct: 403 CKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNP 462

Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294
           V F TLI+  CK G ++      +A +++ +M  NG +PD I+Y+ ++DG  K G+ + A
Sbjct: 463 VTFNTLINFLCKKGLVE------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEA 516

Query: 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354
           L++   M+K+G+  + + ++++ S     G++ +  +M   +    ++ D   Y  VI  
Sbjct: 517 LELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISS 576

Query: 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVV 412
            CK G+T      L  M S G +P   TY  L+ GL   G +K A  +L  +   G +
Sbjct: 577 LCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGAL 634



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 171/346 (49%), Gaps = 16/346 (4%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           +ID + +     V  G    +  YG SP+V  +N L+  LC   + ++A+ +  E   + 
Sbjct: 293 IIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKD 352

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
                V+FN L++  C+   +D    +   M   G  PDV TY+ +ING CKE  +D+A 
Sbjct: 353 CPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAV 412

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
           +LL  M   G  PN V +T ++ G C   R        +A +++ +M   G  P+ +T+ 
Sbjct: 413 MLLRSMAACGCRPNTVSYTIVLKGLCSAER------WVDAEELMSQMIQQGCPPNPVTFN 466

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
            L++  CK+G +E A+++ K+M+  G   D ++++ +I G  + G   EA  +L  M+K 
Sbjct: 467 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKK 526

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM-----RSDGHLPAVETYNALMNGLCKHG 394
           G+ P+   Y+ +       G      ++ + +     RSD  L     YNA+++ LCK G
Sbjct: 527 GMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVL-----YNAVISSLCKRG 581

Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440
           +   A   L  M+  G VP++ TY IL+ G    G  ++  ++ +E
Sbjct: 582 ETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTE 627



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 174/358 (48%), Gaps = 9/358 (2%)

Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
           LI  + R  L       + ++ ++G +P V ++  ++  +CKE +++ A+ + +     G
Sbjct: 258 LIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYG 317

Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
           L    V +NTL+ G C A   +E   L + M       D  T++ L++ LC+   +D   
Sbjct: 318 LSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVI 377

Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
            +L +M E G  P+ + +TT+I+G CK G ID      EA  ++  M   G  P+ ++YT
Sbjct: 378 EVLEQMLEHGCMPDVITYTTVINGFCKEGLID------EAVMLLRSMAACGCRPNTVSYT 431

Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
           I+L G C       A ++  +MI++G   + V F  LI+  C+ G V +A  +L++ML  
Sbjct: 432 IVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN 491

Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
           G  PD  +Y+ VID   K G+T     LL  M   G  P    Y+++ + L   G++   
Sbjct: 492 GCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKV 551

Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE---DFDKLQSEKGLVSDYACYTSLV 454
             + + + D  V  D + YN ++   CK G  +   +F       G V + + YT L+
Sbjct: 552 IQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILI 609



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 129/319 (40%), Gaps = 65/319 (20%)

Query: 202 YSALING--------------------------------LCKENRLDDAELLLHEMCERG 229
           Y+A++ G                                LC   R+ DA  +L +M  RG
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRG 141

Query: 230 LTPNDVIFTTLIDGHCK--------------NGR---IDMA------------GDMKEAR 260
             P   ++   ++  C+              +GR   +D+             G + EA 
Sbjct: 142 CAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAV 201

Query: 261 KIV-DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319
           +++ D + + G  PD ++Y  +L G C         D+ +EM+  G   + V F+ LI  
Sbjct: 202 RLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGH 261

Query: 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379
            CR G       +  +M + G  PD   Y  +ID  CK    +    +L  M S G  P 
Sbjct: 262 LCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPN 321

Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439
           V  YN L+ GLC   + + A  LL  M D     DD+T+NIL++  C++G  +   ++  
Sbjct: 322 VVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLE 381

Query: 440 ---EKGLVSDYACYTSLVS 455
              E G + D   YT++++
Sbjct: 382 QMLEHGCMPDVITYTTVIN 400



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 5/149 (3%)

Query: 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
           + A+++G+CR G   +     R    V + P+  TY  ++   C  G       +L +M 
Sbjct: 82  YNAMVAGYCRAG---QLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
             G  P    Y+  +   C+    + A  +L  +   G   D    N++L+  C  G  +
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVD 198

Query: 433 DFDKLQSEKGLVSDYACYTSLVSKSSKYR 461
           +  +L   + L+  + C   +VS ++  R
Sbjct: 199 EAVRLL--RDLLPSFGCEPDVVSYNAVLR 225


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 198/434 (45%), Gaps = 39/434 (8%)

Query: 57  LPGLV-LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC-LIDRMMRTNLPTVTL 114
           LP +V L AL+      G   +A   FR + K     P     C LID + +      +L
Sbjct: 276 LPDVVTLSALVGGLCKDGRFSEAYALFREMEK-IGAAPNHVTYCMLIDTLAKAQRGNESL 334

Query: 115 GFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174
               E++  G    + ++  LM  LCKEGKI +A+ +F            V++  LI+  
Sbjct: 335 SLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDAL 394

Query: 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
           CKA N+D   ++ S ME   + P+V T+S++INGL K   +  A   + EM ERG+ PN 
Sbjct: 395 CKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNV 454

Query: 235 VIFTTLIDGHCK------------------------------NGRIDMAGDMKEARKIVD 264
           V + T+IDG  K                              NG +   G +++A  +  
Sbjct: 455 VTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNG-LKKNGKIEKAEALFR 513

Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
           EM   G+  D + YT L+DG  K G+L +A  + +E+ ++ +  D V +   I+  C  G
Sbjct: 514 EMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLG 573

Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
           K  EAE  L EM   GLKPD  TY  +I    + G T    +LL  M+     P + TY+
Sbjct: 574 KSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYS 633

Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF----DKLQSE 440
            L+ GL + G ++ A  LL+ M   G  P  +T+  +L+  C  G   D      +    
Sbjct: 634 TLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA-CSQGRRSDLILEIHEWMMN 692

Query: 441 KGLVSDYACYTSLV 454
            GL +D   Y +LV
Sbjct: 693 AGLCADITVYNTLV 706



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 201/439 (45%), Gaps = 34/439 (7%)

Query: 54  GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTV 112
           G  +   ++D+L+      G ++ A   FR + +    +       LID + +T NLP  
Sbjct: 484 GVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPA- 542

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
                 E+ +    P   V+NV ++ LC  GK K+A+   +E    GL    V++NT+I 
Sbjct: 543 AFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIA 602

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
              +     +  +L + M+ S ++P++ TYS LI GL +   ++ A+ LL+EM   G +P
Sbjct: 603 AQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSP 662

Query: 233 NDVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIV 263
             +    ++    +  R D+                              G  ++A  ++
Sbjct: 663 TSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVL 722

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG 323
           +EM   G+ PD IT+  L+ G  K G L++A     +M+  GI  +   F  L+ G    
Sbjct: 723 EEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESA 782

Query: 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383
           G++ E++ +L EM K G++P + TY +++  + K  +     RL  EM   G LP V TY
Sbjct: 783 GRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTY 842

Query: 384 NALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED---FDKLQSE 440
           NAL++   K G +  A  L + M + GV+P   TY+IL+ G  K  N  +   F K   E
Sbjct: 843 NALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKE 902

Query: 441 KGLVSDYACYTSLVSKSSK 459
           KG        +S+    SK
Sbjct: 903 KGFSPSKGTLSSISRAFSK 921



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 171/361 (47%), Gaps = 29/361 (8%)

Query: 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165
           R N        Y E++  G  P V   + L+  LCK+G+  +A  +F E  K G     V
Sbjct: 256 RRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHV 315

Query: 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
           ++  LI+   KA+  +E   L   +   G+  D+  Y+AL++ LCKE ++D+A+ +    
Sbjct: 316 TYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHA 375

Query: 226 CERGLTPNDVIFTTLIDGHCKNGRIDMA-----------------------------GDM 256
                TPN V +T LID  CK G +D A                             G +
Sbjct: 376 LSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWV 435

Query: 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316
            +A   + EM   G++P+ +TY  ++DG  K    E+ALD+  EM+  G+E++     +L
Sbjct: 436 GKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSL 495

Query: 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376
           ++G  + GK+ +AE + REM + G+  D   YT +ID   K G+    F++ +E+     
Sbjct: 496 VNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNL 555

Query: 377 LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436
           LP    YN  +N LC  G+ K A   L+ M   G+ PD +TYN ++    + G      K
Sbjct: 556 LPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALK 615

Query: 437 L 437
           L
Sbjct: 616 L 616



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 180/343 (52%), Gaps = 12/343 (3%)

Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
           L +L    S     +NV+M    ++G +   + +  E  KRG+   AV+ NT++ G C+ 
Sbjct: 92  LALLRSSESVDTVSYNVVMSGFSEQGGLA-PEALLAEMCKRGVPFDAVTVNTVLVGLCRD 150

Query: 178 KNLDEGFRLKSVM-EGSGMRP-DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
             +D    L  VM  G G+   DV  +++L++G CK   ++ A  +   M  +G+  + V
Sbjct: 151 GRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVV 210

Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
            + +L+ G C+ G +D A DM      VD M  +G+ P+ +TYT+ +  +C+   ++ A 
Sbjct: 211 GYNSLVAGLCRAGEVDAARDM------VDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAF 264

Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
            + +EM+++G+  D V  +AL+ G C+ G+  EA  + REM K+G  P+  TY M+ID  
Sbjct: 265 SLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTL 324

Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
            K         LL E+ S G +  +  Y ALM+ LCK G++  A  +    L     P+ 
Sbjct: 325 AKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNG 384

Query: 416 ITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
           +TY +L++  CK GN +  +++ S   EK +  +   ++S+++
Sbjct: 385 VTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIIN 427



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 180/380 (47%), Gaps = 34/380 (8%)

Query: 113 TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172
            L  Y E+L  G   + ++ + L++ L K GKI+ A+ +F E  +RG+    V++ TLI+
Sbjct: 473 ALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLID 532

Query: 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
           G  K  NL   F++   +    + PD   Y+  IN LC   +  +AE  L EM   GL P
Sbjct: 533 GLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKP 592

Query: 233 NDVIFTTLIDGHCKNGRIDM-----------------------------AGDMKEARKIV 263
           + V + T+I    + G+                                AG +++A+ ++
Sbjct: 593 DQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLL 652

Query: 264 DEMCTNGLNPDKITYTILLDGFCKEGDLES-ALDIRKEMIKRGIELDNVAFTALISGFCR 322
           +EM ++G +P  +T+  +L   C +G      L+I + M+  G+  D   +  L+   C 
Sbjct: 653 NEMSSSGFSPTSLTHRRVLQA-CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCY 711

Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
            G   +A  +L EM   G+ PD  T+  +I    K+G     F    +M   G  P V T
Sbjct: 712 NGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVAT 771

Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-- 440
           +N L+ GL   G++  ++M+L+ M   G+ P ++TY+IL+ G+ K  N  +  +L  E  
Sbjct: 772 FNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMV 831

Query: 441 -KGLVSDYACYTSLVSKSSK 459
            KG +   + Y +L+S  SK
Sbjct: 832 GKGFLPKVSTYNALISDFSK 851



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 6/311 (1%)

Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
           P++  ++ L+  L + G ++ A+ + +E    G   T+++   ++    + +  D    +
Sbjct: 627 PNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEI 686

Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
              M  +G+  D+  Y+ L+  LC       A ++L EM  RG+ P+ + F  LI GH K
Sbjct: 687 HEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFK 746

Query: 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
           +G +D       A    D+M  +G++P+  T+  LL G    G +  +  +  EM KRGI
Sbjct: 747 SGHLD------NAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGI 800

Query: 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
           E  N+ +  L++G+ +    VEA R+  EM+  G  P  +TY  +I  F K G       
Sbjct: 801 EPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKE 860

Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
           L  EM++ G LP   TY+ L++G  K          L  M + G  P   T + +     
Sbjct: 861 LFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFS 920

Query: 427 KHGNPEDFDKL 437
           K G   +  +L
Sbjct: 921 KPGMSWEARRL 931



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 8/289 (2%)

Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG-KRGLHATAVSFNTLINGHCKA 177
           E+   G+SP+      ++   C +G+  D  +   E+    GL A    +NTL+   C  
Sbjct: 654 EMSSSGFSPTSLTHRRVLQA-CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYN 712

Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
               +   +   M G G+ PD  T++ALI G  K   LD+A     +M   G++PN   F
Sbjct: 713 GMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATF 772

Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
            TL+ G      ++ AG + E+  +++EM   G+ P  +TY IL+ G+ K+ +   A+ +
Sbjct: 773 NTLLGG------LESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRL 826

Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
             EM+ +G       + ALIS F + G + +A+ +  EM   G+ P   TY +++  + K
Sbjct: 827 YCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSK 886

Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
             +     + LK+M+  G  P+  T +++     K G    A  LL  +
Sbjct: 887 LRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRLLKNL 935



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
           +++ G    + V+N L+  LC  G  + A +V +E   RG+    ++FN LI GH K+ +
Sbjct: 690 MMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGH 749

Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
           LD  F     M   G+ P+V T++ L+ GL    R+ +++++L+EM +RG+ P+++ +  
Sbjct: 750 LDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDI 809

Query: 240 LIDGHCKNGR-----------------------------IDMAGDMKEARKIVDEMCTNG 270
           L+ G+ K                                    G M +A+++ +EM   G
Sbjct: 810 LVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRG 869

Query: 271 LNPDKITYTILLDGFCKEGDLESALDIR---KEMIKRGIELDNVAFTALISGFCRGGKVV 327
           + P   TY IL+ G+ K   L +  ++R   K+M ++G        +++   F + G   
Sbjct: 870 VLPTSCTYDILVSGWSK---LRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSW 926

Query: 328 EAERMLREMLKV 339
           EA R+L+ + KV
Sbjct: 927 EARRLLKNLYKV 938



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 113/268 (42%), Gaps = 45/268 (16%)

Query: 38  GMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97
           GM   A +    +  RG     +  +AL++ +   G LD+A                   
Sbjct: 713 GMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFST---------------- 756

Query: 98  RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157
                              Y ++L +G SP+V  FN L+  L   G+I ++ MV +E  K
Sbjct: 757 -------------------YDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKK 797

Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217
           RG+  + ++++ L+ G+ K  N  E  RL   M G G  P V TY+ALI+   K   +  
Sbjct: 798 RGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQ 857

Query: 218 AELLLHEMCERGLTPNDVIFTTLIDGHCK--NGRIDMAGDMKEARKIVDEMCTNGLNPDK 275
           A+ L +EM  RG+ P    +  L+ G  K  NG         E RK + +M   G +P K
Sbjct: 858 AKELFNEMQNRGVLPTSCTYDILVSGWSKLRNG--------TEVRKFLKDMKEKGFSPSK 909

Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIK 303
            T + +   F K G    A  + K + K
Sbjct: 910 GTLSSISRAFSKPGMSWEARRLLKNLYK 937


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.140    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,266,735,758
Number of Sequences: 23463169
Number of extensions: 307749756
Number of successful extensions: 859980
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7931
Number of HSP's successfully gapped in prelim test: 4843
Number of HSP's that attempted gapping in prelim test: 629125
Number of HSP's gapped (non-prelim): 73416
length of query: 464
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 318
effective length of database: 8,933,572,693
effective search space: 2840876116374
effective search space used: 2840876116374
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)