Query 047873
Match_columns 464
No_of_seqs 532 out of 2976
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 04:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.2E-64 1.3E-68 488.1 55.7 433 5-460 435-895 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.7E-63 5.8E-68 483.7 57.2 450 5-460 368-860 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.7E-61 1E-65 476.5 48.6 440 4-463 149-673 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.7E-60 3.6E-65 461.8 43.9 437 5-462 85-543 (697)
5 PLN03081 pentatricopeptide (PP 100.0 4.4E-59 9.5E-64 451.9 44.8 423 3-445 119-561 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.5E-58 3.2E-63 458.7 45.3 453 2-463 81-641 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-29 1.3E-33 253.0 51.2 423 3-462 461-886 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-28 7.5E-33 247.4 51.6 401 4-441 496-897 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 9.1E-24 2E-28 184.8 35.5 424 9-454 50-497 (966)
10 TIGR00990 3a0801s09 mitochondr 99.9 3.7E-21 8E-26 184.8 51.1 406 8-445 128-573 (615)
11 PRK11447 cellulose synthase su 99.9 1.1E-21 2.3E-26 200.6 48.5 415 4-440 300-736 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.2E-22 2.7E-27 177.8 33.6 380 5-424 114-499 (966)
13 PRK11447 cellulose synthase su 99.9 1E-20 2.2E-25 193.4 51.8 419 3-440 177-696 (1157)
14 PRK15174 Vi polysaccharide exp 99.9 7.9E-21 1.7E-25 181.9 45.4 334 11-374 46-381 (656)
15 PRK11788 tetratricopeptide rep 99.9 4.9E-22 1.1E-26 181.6 33.4 303 66-381 42-354 (389)
16 PRK11788 tetratricopeptide rep 99.9 8.4E-22 1.8E-26 180.1 34.1 313 100-431 41-363 (389)
17 PRK15174 Vi polysaccharide exp 99.9 4E-20 8.6E-25 177.1 44.0 334 60-409 43-381 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.6E-19 3.5E-24 176.6 48.3 409 7-450 15-463 (765)
19 PRK14574 hmsH outer membrane p 99.9 2.6E-18 5.7E-23 165.0 48.7 411 4-447 31-517 (822)
20 PRK09782 bacteriophage N4 rece 99.9 2E-18 4.4E-23 169.2 48.6 188 10-226 47-274 (987)
21 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-18 2.6E-23 167.5 46.1 371 4-409 157-571 (615)
22 PRK10049 pgaA outer membrane p 99.9 3.7E-19 8.1E-24 174.1 41.5 387 3-425 45-470 (765)
23 KOG2002 TPR-containing nuclear 99.9 3.3E-18 7.2E-23 157.8 36.2 405 9-446 309-748 (1018)
24 PRK14574 hmsH outer membrane p 99.8 6.8E-16 1.5E-20 148.6 46.9 377 63-447 38-483 (822)
25 PRK09782 bacteriophage N4 rece 99.8 7.3E-15 1.6E-19 144.6 48.5 421 3-446 243-709 (987)
26 KOG2003 TPR repeat-containing 99.8 2.3E-16 4.9E-21 134.1 29.0 248 208-461 428-708 (840)
27 KOG4422 Uncharacterized conser 99.8 2.9E-14 6.3E-19 120.5 39.5 392 6-411 115-592 (625)
28 KOG2002 TPR-containing nuclear 99.8 2.9E-15 6.3E-20 138.8 36.4 426 4-458 267-727 (1018)
29 KOG2076 RNA polymerase III tra 99.8 5.9E-15 1.3E-19 135.8 37.9 392 7-434 139-545 (895)
30 KOG2003 TPR repeat-containing 99.8 9.7E-16 2.1E-20 130.3 28.2 354 60-431 277-710 (840)
31 KOG4422 Uncharacterized conser 99.8 2E-14 4.3E-19 121.5 34.8 306 60-375 117-463 (625)
32 KOG2076 RNA polymerase III tra 99.7 1.9E-13 4E-18 126.1 39.7 431 4-462 170-720 (895)
33 KOG0495 HAT repeat protein [RN 99.7 2.9E-12 6.4E-17 114.3 42.6 416 3-440 436-876 (913)
34 TIGR00540 hemY_coli hemY prote 99.7 7E-14 1.5E-18 127.4 33.7 294 70-373 95-398 (409)
35 TIGR00540 hemY_coli hemY prote 99.7 1.3E-13 2.9E-18 125.6 35.1 292 105-408 95-398 (409)
36 PRK10747 putative protoheme IX 99.7 1.4E-13 3.1E-18 124.6 35.0 283 107-408 97-389 (398)
37 PF13429 TPR_15: Tetratricopep 99.7 7E-17 1.5E-21 139.8 12.5 262 64-338 13-276 (280)
38 KOG1155 Anaphase-promoting com 99.7 3.1E-12 6.6E-17 109.6 38.7 382 54-460 159-553 (559)
39 KOG1155 Anaphase-promoting com 99.7 2.8E-12 6.1E-17 109.8 38.0 379 5-426 162-551 (559)
40 KOG0547 Translocase of outer m 99.7 8.8E-13 1.9E-17 113.6 35.0 394 8-440 116-562 (606)
41 KOG0495 HAT repeat protein [RN 99.7 6.1E-12 1.3E-16 112.3 41.1 362 8-409 517-880 (913)
42 PRK10747 putative protoheme IX 99.7 2.8E-13 6.1E-18 122.7 33.9 287 72-374 97-390 (398)
43 PF13429 TPR_15: Tetratricopep 99.7 2.9E-16 6.2E-21 136.0 13.0 258 136-406 15-274 (280)
44 KOG1915 Cell cycle control pro 99.7 1.5E-11 3.2E-16 105.8 39.6 382 56-453 104-546 (677)
45 COG2956 Predicted N-acetylgluc 99.7 1.1E-12 2.4E-17 107.1 29.3 284 73-407 49-345 (389)
46 KOG1126 DNA-binding cell divis 99.7 7.6E-14 1.7E-18 124.6 24.0 281 74-374 334-620 (638)
47 COG2956 Predicted N-acetylgluc 99.6 1E-12 2.2E-17 107.3 27.6 287 106-439 47-342 (389)
48 KOG1915 Cell cycle control pro 99.6 5E-11 1.1E-15 102.6 38.5 353 60-424 142-549 (677)
49 COG3071 HemY Uncharacterized e 99.6 4.9E-12 1.1E-16 106.5 31.4 292 107-414 97-395 (400)
50 KOG1126 DNA-binding cell divis 99.6 2.5E-13 5.3E-18 121.5 24.9 284 109-409 334-620 (638)
51 COG3071 HemY Uncharacterized e 99.6 7.3E-12 1.6E-16 105.5 31.9 120 73-194 98-217 (400)
52 KOG1173 Anaphase-promoting com 99.6 3.4E-11 7.4E-16 105.9 35.0 390 58-460 81-535 (611)
53 PRK12370 invasion protein regu 99.6 2.9E-12 6.3E-17 121.3 28.2 264 5-304 254-535 (553)
54 TIGR02521 type_IV_pilW type IV 99.6 2E-12 4.3E-17 109.5 24.0 203 4-228 28-232 (234)
55 KOG2376 Signal recognition par 99.5 9.5E-10 2.1E-14 97.5 38.2 396 8-440 13-516 (652)
56 KOG2047 mRNA splicing factor [ 99.5 3.7E-09 8E-14 94.8 39.6 331 29-374 108-506 (835)
57 KOG1173 Anaphase-promoting com 99.5 2.1E-10 4.5E-15 101.1 31.4 287 126-426 241-533 (611)
58 KOG0547 Translocase of outer m 99.5 5.8E-10 1.3E-14 96.6 31.7 368 64-447 120-536 (606)
59 KOG1156 N-terminal acetyltrans 99.5 5.7E-09 1.2E-13 93.8 37.5 390 9-440 10-464 (700)
60 KOG2047 mRNA splicing factor [ 99.5 9.2E-09 2E-13 92.3 38.5 437 7-456 102-631 (835)
61 PRK12370 invasion protein regu 99.5 4E-11 8.7E-16 113.7 25.2 251 108-374 275-535 (553)
62 KOG3785 Uncharacterized conser 99.5 1.9E-09 4.2E-14 89.7 31.1 399 17-458 32-505 (557)
63 TIGR02521 type_IV_pilW type IV 99.4 1E-10 2.2E-15 98.9 24.3 200 59-268 31-231 (234)
64 KOG1156 N-terminal acetyltrans 99.4 7.7E-09 1.7E-13 92.9 35.9 371 5-406 73-508 (700)
65 KOG1129 TPR repeat-containing 99.4 1.5E-11 3.3E-16 100.7 17.1 230 11-269 227-458 (478)
66 PF12569 NARP1: NMDA receptor- 99.4 8E-10 1.7E-14 101.4 30.3 123 314-439 198-329 (517)
67 KOG4162 Predicted calmodulin-b 99.4 6E-09 1.3E-13 95.5 35.3 402 3-440 319-779 (799)
68 COG3063 PilF Tfp pilus assembl 99.4 3.5E-10 7.6E-15 88.5 23.7 205 9-237 37-243 (250)
69 PF12569 NARP1: NMDA receptor- 99.4 2.6E-09 5.6E-14 98.1 32.8 307 65-407 10-332 (517)
70 KOG1174 Anaphase-promoting com 99.4 2E-08 4.3E-13 85.5 34.7 415 13-447 49-504 (564)
71 KOG1129 TPR repeat-containing 99.4 4.9E-11 1.1E-15 97.8 18.0 229 99-339 228-458 (478)
72 cd05804 StaR_like StaR_like; a 99.4 6.5E-09 1.4E-13 93.9 34.1 205 4-228 3-215 (355)
73 KOG1174 Anaphase-promoting com 99.4 3.4E-09 7.4E-14 90.0 29.2 266 60-339 233-500 (564)
74 KOG0548 Molecular co-chaperone 99.4 1.1E-08 2.4E-13 90.0 32.9 387 13-427 8-471 (539)
75 KOG1840 Kinesin light chain [C 99.4 3.3E-10 7.2E-15 102.6 23.0 243 164-407 199-477 (508)
76 KOG3785 Uncharacterized conser 99.3 3.3E-08 7.2E-13 82.5 31.5 363 13-424 63-503 (557)
77 PRK11189 lipoprotein NlpI; Pro 99.3 9.1E-10 2E-14 95.6 24.0 204 7-238 64-274 (296)
78 KOG4318 Bicoid mRNA stability 99.3 1.4E-08 3.1E-13 94.4 32.4 206 2-213 20-285 (1088)
79 KOG0624 dsRNA-activated protei 99.3 1.5E-08 3.3E-13 84.1 29.2 308 7-340 38-371 (504)
80 KOG4340 Uncharacterized conser 99.3 5E-09 1.1E-13 85.2 25.5 325 10-373 13-374 (459)
81 KOG4318 Bicoid mRNA stability 99.3 2.3E-09 4.9E-14 99.6 26.5 270 50-360 16-286 (1088)
82 KOG1840 Kinesin light chain [C 99.3 7.2E-10 1.6E-14 100.4 22.8 254 3-302 195-477 (508)
83 PF13041 PPR_2: PPR repeat fam 99.3 7.7E-12 1.7E-16 75.9 6.6 50 378-427 1-50 (50)
84 COG3063 PilF Tfp pilus assembl 99.3 4.2E-09 9.2E-14 82.5 22.9 199 60-268 36-235 (250)
85 PRK11189 lipoprotein NlpI; Pro 99.3 6.4E-09 1.4E-13 90.4 26.1 127 60-190 65-191 (296)
86 KOG1914 mRNA cleavage and poly 99.3 5E-07 1.1E-11 79.9 36.7 413 4-440 17-497 (656)
87 PF13041 PPR_2: PPR repeat fam 99.3 2E-11 4.4E-16 74.0 6.5 49 197-245 1-49 (50)
88 KOG2376 Signal recognition par 99.3 2.2E-07 4.9E-12 82.9 33.8 381 64-462 17-507 (652)
89 cd05804 StaR_like StaR_like; a 99.3 1.1E-07 2.3E-12 86.0 33.2 201 57-268 3-214 (355)
90 KOG1127 TPR repeat-containing 99.1 2.6E-07 5.7E-12 87.4 30.1 403 7-437 492-945 (1238)
91 KOG4162 Predicted calmodulin-b 99.1 1.5E-06 3.2E-11 80.3 33.8 372 6-409 356-783 (799)
92 PRK04841 transcriptional regul 99.1 1.2E-06 2.7E-11 89.6 36.9 339 65-409 380-760 (903)
93 PLN02789 farnesyltranstransfer 99.1 1.9E-07 4.1E-12 81.1 24.7 216 8-247 38-268 (320)
94 KOG0548 Molecular co-chaperone 99.1 1E-06 2.2E-11 78.0 28.7 379 66-459 9-471 (539)
95 KOG3617 WD40 and TPR repeat-co 99.1 1.5E-06 3.2E-11 80.9 30.6 363 17-459 810-1231(1416)
96 PRK04841 transcriptional regul 99.1 2.1E-06 4.7E-11 87.9 36.0 373 60-440 342-756 (903)
97 KOG4340 Uncharacterized conser 99.1 5.6E-07 1.2E-11 73.6 24.4 302 4-337 41-373 (459)
98 KOG0985 Vesicle coat protein c 99.0 4.7E-06 1E-10 79.4 33.1 358 41-462 965-1328(1666)
99 TIGR03302 OM_YfiO outer membra 99.0 4.5E-08 9.8E-13 82.6 18.8 186 4-228 30-232 (235)
100 KOG1125 TPR repeat-containing 99.0 9.8E-08 2.1E-12 85.0 20.5 226 65-303 291-526 (579)
101 KOG0985 Vesicle coat protein c 99.0 7.6E-06 1.6E-10 78.0 33.6 102 288-403 1088-1189(1666)
102 PF04733 Coatomer_E: Coatomer 99.0 3E-08 6.4E-13 84.9 16.3 254 173-448 10-270 (290)
103 PF04733 Coatomer_E: Coatomer 99.0 7.3E-08 1.6E-12 82.5 17.5 251 69-339 11-265 (290)
104 KOG1125 TPR repeat-containing 99.0 3.6E-07 7.7E-12 81.5 21.6 227 135-372 291-525 (579)
105 KOG0624 dsRNA-activated protei 98.9 1.9E-05 4.2E-10 66.2 32.0 299 60-374 39-370 (504)
106 PLN02789 farnesyltranstransfer 98.9 2.8E-06 6.1E-11 73.9 25.5 220 60-287 38-267 (320)
107 PRK10370 formate-dependent nit 98.9 2.2E-07 4.9E-12 75.1 17.1 119 72-193 52-173 (198)
108 PRK15359 type III secretion sy 98.9 7.7E-08 1.7E-12 73.5 13.6 93 64-158 29-121 (144)
109 TIGR03302 OM_YfiO outer membra 98.9 5.4E-07 1.2E-11 76.1 19.4 173 59-253 33-222 (235)
110 COG5010 TadD Flp pilus assembl 98.9 7E-07 1.5E-11 72.0 18.5 170 53-227 60-230 (257)
111 KOG3616 Selective LIM binding 98.9 1.2E-05 2.5E-10 74.3 28.3 109 207-334 740-848 (1636)
112 PRK14720 transcript cleavage f 98.9 1.8E-06 3.8E-11 83.8 24.4 235 4-245 28-268 (906)
113 KOG1127 TPR repeat-containing 98.9 5.4E-06 1.2E-10 78.9 26.6 382 49-439 481-908 (1238)
114 PRK15179 Vi polysaccharide bio 98.9 1.9E-07 4.1E-12 89.4 17.7 135 3-158 82-217 (694)
115 COG5010 TadD Flp pilus assembl 98.8 4.4E-07 9.6E-12 73.1 16.4 133 56-191 97-229 (257)
116 KOG3616 Selective LIM binding 98.8 6.3E-06 1.4E-10 76.0 25.3 170 171-371 739-908 (1636)
117 KOG1070 rRNA processing protei 98.8 7.9E-06 1.7E-10 80.5 26.6 204 129-342 1458-1666(1710)
118 KOG1070 rRNA processing protei 98.8 8.7E-06 1.9E-10 80.2 26.3 239 42-295 1443-1691(1710)
119 PRK15359 type III secretion sy 98.8 3.5E-07 7.7E-12 69.9 13.9 123 79-208 13-135 (144)
120 PRK14720 transcript cleavage f 98.8 8.2E-06 1.8E-10 79.3 25.2 224 54-321 25-268 (906)
121 KOG1128 Uncharacterized conser 98.8 7.3E-07 1.6E-11 81.8 17.1 225 1-269 392-616 (777)
122 KOG1128 Uncharacterized conser 98.7 2.2E-06 4.8E-11 78.8 19.5 223 54-303 393-615 (777)
123 KOG3081 Vesicle coat complex C 98.7 2.2E-05 4.7E-10 63.6 22.4 140 283-433 116-259 (299)
124 PRK15179 Vi polysaccharide bio 98.7 1.1E-05 2.4E-10 77.6 24.4 230 9-248 30-269 (694)
125 PRK10370 formate-dependent nit 98.7 9.1E-07 2E-11 71.6 14.4 161 66-243 23-186 (198)
126 TIGR02552 LcrH_SycD type III s 98.7 1.2E-06 2.6E-11 66.7 13.7 110 54-167 11-121 (135)
127 KOG3060 Uncharacterized conser 98.7 3.7E-05 8.1E-10 61.8 21.6 192 20-229 25-221 (289)
128 KOG3617 WD40 and TPR repeat-co 98.6 0.00014 3.1E-09 68.3 28.2 367 6-442 756-1172(1416)
129 KOG3081 Vesicle coat complex C 98.6 2.4E-05 5.1E-10 63.4 20.3 262 57-339 8-271 (299)
130 PF12854 PPR_1: PPR repeat 98.6 6.3E-08 1.4E-12 52.5 3.9 32 194-225 2-33 (34)
131 PF12854 PPR_1: PPR repeat 98.6 6.5E-08 1.4E-12 52.5 3.9 32 375-406 2-33 (34)
132 COG4783 Putative Zn-dependent 98.6 6.8E-06 1.5E-10 72.3 18.1 147 61-228 308-454 (484)
133 TIGR02552 LcrH_SycD type III s 98.6 1.6E-06 3.5E-11 66.0 12.7 102 4-125 14-116 (135)
134 KOG2053 Mitochondrial inherita 98.5 0.0013 2.7E-08 62.8 40.6 92 312-405 438-532 (932)
135 KOG1914 mRNA cleavage and poly 98.4 0.0011 2.3E-08 59.6 35.8 361 3-374 49-501 (656)
136 KOG3060 Uncharacterized conser 98.4 0.00038 8.1E-09 56.2 21.5 185 256-445 28-222 (289)
137 COG4783 Putative Zn-dependent 98.4 0.00028 6.1E-09 62.5 22.3 128 97-228 309-437 (484)
138 PF09976 TPR_21: Tetratricopep 98.3 2.2E-05 4.7E-10 60.3 13.4 116 71-189 23-143 (145)
139 PF09976 TPR_21: Tetratricopep 98.3 3.2E-05 7E-10 59.4 14.2 130 8-155 13-144 (145)
140 TIGR02795 tol_pal_ybgF tol-pal 98.3 3E-05 6.4E-10 57.5 13.4 103 8-125 3-107 (119)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.7E-05 1.2E-09 67.2 16.9 124 311-441 170-294 (395)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.4E-05 1.2E-09 67.4 15.7 124 278-407 172-295 (395)
143 PRK15363 pathogenicity island 98.3 1.7E-05 3.8E-10 59.6 10.7 100 57-158 32-132 (157)
144 cd00189 TPR Tetratricopeptide 98.3 1.4E-05 3E-10 56.5 10.0 94 9-122 2-96 (100)
145 PLN03088 SGT1, suppressor of 98.2 2.8E-05 6.1E-10 69.4 13.7 102 11-133 6-108 (356)
146 PRK15363 pathogenicity island 98.2 2.7E-05 5.9E-10 58.6 11.1 98 94-193 35-132 (157)
147 KOG0553 TPR repeat-containing 98.2 3.4E-05 7.3E-10 63.8 12.5 94 11-124 85-179 (304)
148 KOG2053 Mitochondrial inherita 98.2 0.0064 1.4E-07 58.3 41.3 225 18-271 20-257 (932)
149 PRK10866 outer membrane biogen 98.2 0.00034 7.3E-09 58.7 18.0 56 170-225 181-238 (243)
150 TIGR00756 PPR pentatricopeptid 98.1 5.1E-06 1.1E-10 45.8 4.5 33 382-414 2-34 (35)
151 CHL00033 ycf3 photosystem I as 98.1 0.0001 2.2E-09 58.4 12.8 94 60-154 36-138 (168)
152 PF13812 PPR_3: Pentatricopept 98.1 7.2E-06 1.6E-10 44.8 4.5 33 381-413 2-34 (34)
153 PF12895 Apc3: Anaphase-promot 98.1 4E-06 8.6E-11 57.5 4.1 82 20-119 2-83 (84)
154 PF05843 Suf: Suppressor of fo 98.1 6.9E-05 1.5E-09 64.5 12.3 129 277-408 3-135 (280)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00013 2.9E-09 53.9 12.3 98 61-158 4-105 (119)
156 cd00189 TPR Tetratricopeptide 98.1 6E-05 1.3E-09 53.0 10.1 94 62-157 3-96 (100)
157 PF10037 MRP-S27: Mitochondria 98.1 0.00012 2.6E-09 65.5 13.6 123 271-393 62-186 (429)
158 PRK02603 photosystem I assembl 98.1 0.00016 3.5E-09 57.5 13.2 112 62-178 38-165 (172)
159 PF12688 TPR_5: Tetratrico pep 98.1 0.00027 5.9E-09 51.4 13.0 110 10-140 4-117 (120)
160 PF10037 MRP-S27: Mitochondria 98.0 0.00011 2.4E-09 65.8 13.0 105 254-358 80-186 (429)
161 PF13414 TPR_11: TPR repeat; P 98.0 1.8E-05 3.8E-10 51.9 6.1 64 6-88 2-67 (69)
162 PF14938 SNAP: Soluble NSF att 98.0 0.00074 1.6E-08 58.5 17.2 204 7-226 35-264 (282)
163 COG4235 Cytochrome c biogenesi 98.0 0.00013 2.8E-09 60.8 11.8 114 56-173 152-269 (287)
164 PF13432 TPR_16: Tetratricopep 98.0 4.3E-05 9.2E-10 49.3 7.4 58 13-89 3-61 (65)
165 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 44.3 4.2 33 201-233 2-34 (35)
166 PF05843 Suf: Suppressor of fo 98.0 0.00014 3.1E-09 62.6 12.7 131 60-193 2-136 (280)
167 KOG0550 Molecular chaperone (D 98.0 0.0056 1.2E-07 53.3 21.6 88 285-374 259-350 (486)
168 PLN03088 SGT1, suppressor of 98.0 0.0002 4.4E-09 64.0 13.4 91 66-158 9-99 (356)
169 PRK02603 photosystem I assembl 98.0 0.0004 8.8E-09 55.1 13.8 116 94-214 35-166 (172)
170 PF13812 PPR_3: Pentatricopept 98.0 1.8E-05 3.9E-10 43.2 4.3 32 201-232 3-34 (34)
171 KOG2796 Uncharacterized conser 98.0 0.0028 6.1E-08 51.6 18.1 133 96-229 179-316 (366)
172 COG4235 Cytochrome c biogenesi 97.9 0.0011 2.5E-08 55.4 16.1 117 75-194 138-257 (287)
173 KOG0553 TPR repeat-containing 97.9 0.00011 2.5E-09 60.8 10.0 101 319-424 90-191 (304)
174 PF08579 RPM2: Mitochondrial r 97.9 0.00027 5.8E-09 49.4 10.0 78 350-427 30-116 (120)
175 COG4700 Uncharacterized protei 97.9 0.0043 9.4E-08 47.8 17.2 134 91-226 86-220 (251)
176 PF12895 Apc3: Anaphase-promot 97.9 1.9E-05 4.1E-10 54.1 4.6 81 72-154 2-83 (84)
177 PRK10153 DNA-binding transcrip 97.9 0.00058 1.3E-08 63.9 15.5 135 3-158 333-482 (517)
178 PRK10153 DNA-binding transcrip 97.9 0.0013 2.8E-08 61.6 17.5 61 346-408 421-481 (517)
179 PF13525 YfiO: Outer membrane 97.9 0.0012 2.5E-08 54.0 15.4 70 5-89 3-72 (203)
180 CHL00033 ycf3 photosystem I as 97.9 0.00041 9E-09 54.9 12.2 115 75-190 15-139 (168)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.019 4.1E-07 50.8 30.8 148 311-461 398-549 (660)
182 PF08579 RPM2: Mitochondrial r 97.8 0.00038 8.2E-09 48.7 9.7 77 280-356 30-115 (120)
183 PF14559 TPR_19: Tetratricopep 97.8 4.5E-05 9.9E-10 49.7 5.2 53 18-89 2-55 (68)
184 COG4700 Uncharacterized protei 97.8 0.0086 1.9E-07 46.2 18.0 165 99-269 61-226 (251)
185 PF04840 Vps16_C: Vps16, C-ter 97.8 0.02 4.2E-07 50.1 26.2 109 312-440 179-287 (319)
186 KOG2041 WD40 repeat protein [G 97.8 0.035 7.7E-07 52.0 25.9 188 4-224 689-877 (1189)
187 PRK10866 outer membrane biogen 97.8 0.0066 1.4E-07 51.0 18.2 179 62-266 35-238 (243)
188 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1E-09 40.4 3.6 29 382-410 2-30 (31)
189 KOG2280 Vacuolar assembly/sort 97.7 0.041 9E-07 52.0 28.4 113 309-440 683-795 (829)
190 PRK10803 tol-pal system protei 97.7 0.00048 1E-08 58.2 11.2 65 60-124 181-247 (263)
191 PF13432 TPR_16: Tetratricopep 97.7 0.00014 3.1E-09 46.8 6.3 59 65-124 3-61 (65)
192 KOG0550 Molecular chaperone (D 97.7 0.005 1.1E-07 53.6 16.5 279 135-446 55-353 (486)
193 PF14938 SNAP: Soluble NSF att 97.7 0.0015 3.2E-08 56.6 13.8 204 60-268 36-265 (282)
194 PF12688 TPR_5: Tetratrico pep 97.7 0.0039 8.6E-08 45.4 13.6 55 319-373 10-66 (120)
195 PF01535 PPR: PPR repeat; Int 97.7 6.4E-05 1.4E-09 39.9 3.3 29 201-229 2-30 (31)
196 KOG1130 Predicted G-alpha GTPa 97.6 0.0023 5E-08 55.6 13.7 132 276-407 196-342 (639)
197 PRK15331 chaperone protein Sic 97.6 0.0023 4.9E-08 48.7 12.1 103 54-158 31-134 (165)
198 KOG1130 Predicted G-alpha GTPa 97.6 0.0045 9.7E-08 53.9 15.1 202 10-225 20-261 (639)
199 PF13424 TPR_12: Tetratricopep 97.6 0.00021 4.6E-09 48.0 6.0 71 4-87 2-74 (78)
200 PF13414 TPR_11: TPR repeat; P 97.6 0.00023 4.9E-09 46.5 5.9 63 60-123 4-67 (69)
201 KOG0543 FKBP-type peptidyl-pro 97.6 0.0031 6.8E-08 54.9 14.0 134 13-156 214-353 (397)
202 PF06239 ECSIT: Evolutionarily 97.6 0.0039 8.5E-08 49.6 12.9 104 196-324 44-152 (228)
203 PF14559 TPR_19: Tetratricopep 97.6 0.00022 4.7E-09 46.5 5.3 50 72-122 4-53 (68)
204 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.0028 6.1E-08 56.6 13.0 68 2-88 70-141 (453)
205 PF13371 TPR_9: Tetratricopept 97.5 0.00076 1.6E-08 44.6 7.1 56 15-89 3-59 (73)
206 PF13525 YfiO: Outer membrane 97.5 0.0087 1.9E-07 48.9 14.6 169 61-250 7-194 (203)
207 PF06239 ECSIT: Evolutionarily 97.5 0.003 6.5E-08 50.3 11.0 120 219-360 34-153 (228)
208 COG4105 ComL DNA uptake lipopr 97.4 0.048 1.1E-06 44.9 19.8 59 169-228 172-233 (254)
209 PRK10803 tol-pal system protei 97.4 0.0056 1.2E-07 51.9 12.6 99 60-158 144-246 (263)
210 PF03704 BTAD: Bacterial trans 97.3 0.0087 1.9E-07 46.0 12.6 69 97-166 65-138 (146)
211 PF07079 DUF1347: Protein of u 97.3 0.12 2.5E-06 46.2 38.8 411 16-455 15-533 (549)
212 PF13371 TPR_9: Tetratricopept 97.3 0.0013 2.8E-08 43.5 6.3 58 67-125 3-60 (73)
213 COG3898 Uncharacterized membra 97.2 0.14 3.1E-06 44.7 31.0 262 60-339 119-392 (531)
214 PF03704 BTAD: Bacterial trans 97.1 0.0034 7.5E-08 48.3 8.3 72 61-133 64-140 (146)
215 PRK15331 chaperone protein Sic 97.0 0.09 2E-06 40.3 15.2 91 282-374 44-134 (165)
216 KOG1585 Protein required for f 97.0 0.15 3.2E-06 41.6 16.7 204 1-222 25-250 (308)
217 PF07079 DUF1347: Protein of u 97.0 0.25 5.4E-06 44.2 37.8 384 19-420 91-530 (549)
218 PF13281 DUF4071: Domain of un 97.0 0.25 5.3E-06 43.9 21.0 172 277-450 143-341 (374)
219 KOG2796 Uncharacterized conser 97.0 0.16 3.6E-06 41.8 24.1 154 60-228 70-241 (366)
220 KOG2041 WD40 repeat protein [G 97.0 0.36 7.8E-06 45.7 24.6 109 60-191 797-905 (1189)
221 PRK11906 transcriptional regul 97.0 0.051 1.1E-06 49.0 14.8 132 8-157 252-400 (458)
222 PF13424 TPR_12: Tetratricopep 96.9 0.0033 7.1E-08 42.2 5.9 62 346-407 6-73 (78)
223 PF13428 TPR_14: Tetratricopep 96.8 0.0029 6.2E-08 36.7 4.3 28 8-35 2-29 (44)
224 PF04840 Vps16_C: Vps16, C-ter 96.8 0.3 6.6E-06 42.9 31.2 299 61-425 2-301 (319)
225 PF12921 ATP13: Mitochondrial 96.8 0.012 2.6E-07 43.4 8.3 98 6-106 1-100 (126)
226 PF12921 ATP13: Mitochondrial 96.8 0.088 1.9E-06 38.9 12.8 102 128-249 1-103 (126)
227 PF13512 TPR_18: Tetratricopep 96.8 0.067 1.5E-06 39.9 11.9 84 6-104 9-92 (142)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.41 8.8E-06 42.9 25.8 112 347-461 399-516 (660)
229 COG1729 Uncharacterized protei 96.7 0.033 7.2E-07 46.2 11.0 97 61-158 144-244 (262)
230 COG1729 Uncharacterized protei 96.7 0.057 1.2E-06 44.9 12.1 99 94-193 142-244 (262)
231 PF13512 TPR_18: Tetratricopep 96.7 0.07 1.5E-06 39.8 11.4 83 62-144 13-97 (142)
232 KOG4555 TPR repeat-containing 96.7 0.054 1.2E-06 39.2 10.2 89 69-158 53-144 (175)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.058 1.3E-06 48.5 12.8 68 55-123 70-141 (453)
234 PF09205 DUF1955: Domain of un 96.6 0.029 6.3E-07 40.7 8.8 138 17-160 12-151 (161)
235 KOG1538 Uncharacterized conser 96.6 0.24 5.3E-06 46.3 16.6 252 128-408 555-845 (1081)
236 KOG1585 Protein required for f 96.6 0.33 7.1E-06 39.7 16.8 56 383-439 193-251 (308)
237 COG3118 Thioredoxin domain-con 96.5 0.4 8.7E-06 40.5 17.9 147 101-250 141-288 (304)
238 KOG0543 FKBP-type peptidyl-pro 96.5 0.039 8.6E-07 48.4 10.5 92 66-158 215-320 (397)
239 KOG1920 IkappaB kinase complex 96.4 1.2 2.7E-05 45.1 22.3 136 281-440 914-1051(1265)
240 COG3898 Uncharacterized membra 96.4 0.58 1.3E-05 41.2 30.2 310 74-409 68-392 (531)
241 KOG2610 Uncharacterized conser 96.4 0.12 2.5E-06 44.3 12.1 155 69-225 113-273 (491)
242 PF13281 DUF4071: Domain of un 96.3 0.74 1.6E-05 41.0 20.8 120 288-409 195-334 (374)
243 PF04053 Coatomer_WDAD: Coatom 96.3 0.088 1.9E-06 48.5 12.3 161 15-226 269-429 (443)
244 COG4649 Uncharacterized protei 96.3 0.36 7.9E-06 37.1 13.8 121 106-228 70-196 (221)
245 KOG2114 Vacuolar assembly/sort 96.2 1.4 3E-05 42.9 25.5 176 12-225 339-516 (933)
246 PF10300 DUF3808: Protein of u 96.2 0.58 1.3E-05 43.9 17.2 175 259-440 176-372 (468)
247 PF04184 ST7: ST7 protein; In 96.2 0.63 1.4E-05 42.5 16.3 81 349-429 263-345 (539)
248 PF13176 TPR_7: Tetratricopept 96.2 0.012 2.7E-07 32.2 3.9 26 9-34 1-26 (36)
249 PF13428 TPR_14: Tetratricopep 96.1 0.02 4.3E-07 33.1 4.8 39 61-100 3-41 (44)
250 KOG2280 Vacuolar assembly/sort 96.1 1.4 3.1E-05 42.3 32.7 341 68-445 398-774 (829)
251 COG4785 NlpI Lipoprotein NlpI, 96.1 0.58 1.3E-05 37.6 14.0 166 54-228 93-266 (297)
252 KOG1258 mRNA processing protei 96.0 1.3 2.8E-05 41.4 32.6 355 60-432 80-492 (577)
253 COG0457 NrfG FOG: TPR repeat [ 96.0 0.74 1.6E-05 38.4 22.8 165 60-228 96-265 (291)
254 PF04053 Coatomer_WDAD: Coatom 96.0 0.22 4.8E-06 45.9 13.4 142 275-449 295-436 (443)
255 KOG1538 Uncharacterized conser 96.0 0.37 7.9E-06 45.2 14.4 49 134-191 752-800 (1081)
256 COG4105 ComL DNA uptake lipopr 96.0 0.75 1.6E-05 38.2 19.3 58 281-338 173-232 (254)
257 PF10300 DUF3808: Protein of u 96.0 0.52 1.1E-05 44.2 15.9 26 11-36 192-217 (468)
258 KOG4555 TPR repeat-containing 95.9 0.32 6.9E-06 35.4 10.7 92 102-194 51-145 (175)
259 PF08631 SPO22: Meiosis protei 95.8 1.1 2.4E-05 38.8 25.4 165 175-345 4-192 (278)
260 PF04097 Nic96: Nup93/Nic96; 95.8 2.1 4.5E-05 41.9 19.7 64 60-125 113-183 (613)
261 PF13170 DUF4003: Protein of u 95.8 1.1 2.3E-05 39.1 15.9 138 215-354 78-226 (297)
262 KOG2610 Uncharacterized conser 95.8 0.35 7.6E-06 41.5 12.3 147 257-406 120-273 (491)
263 KOG4234 TPR repeat-containing 95.7 0.18 3.8E-06 39.8 9.5 100 11-124 99-198 (271)
264 smart00299 CLH Clathrin heavy 95.6 0.7 1.5E-05 35.1 15.7 125 279-426 11-136 (140)
265 PF09613 HrpB1_HrpK: Bacterial 95.6 0.74 1.6E-05 35.3 12.7 24 65-88 50-73 (160)
266 PRK11906 transcriptional regul 95.6 1.8 3.9E-05 39.5 18.0 162 238-405 257-432 (458)
267 COG4649 Uncharacterized protei 95.6 0.8 1.7E-05 35.4 14.7 125 69-193 68-196 (221)
268 PF00515 TPR_1: Tetratricopept 95.6 0.025 5.5E-07 30.4 3.5 29 7-35 1-29 (34)
269 COG3118 Thioredoxin domain-con 95.5 1.3 2.8E-05 37.6 17.5 148 66-216 141-289 (304)
270 PF08631 SPO22: Meiosis protei 95.3 1.7 3.7E-05 37.7 25.4 163 70-234 4-192 (278)
271 smart00299 CLH Clathrin heavy 95.3 0.9 2E-05 34.5 15.3 41 65-106 13-53 (140)
272 COG2976 Uncharacterized protei 95.3 0.21 4.6E-06 39.3 8.8 94 64-159 94-189 (207)
273 PF13431 TPR_17: Tetratricopep 95.2 0.015 3.2E-07 31.3 1.9 27 54-80 7-34 (34)
274 PF04184 ST7: ST7 protein; In 95.2 1.5 3.3E-05 40.2 15.0 78 129-206 259-338 (539)
275 PF07719 TPR_2: Tetratricopept 95.1 0.034 7.4E-07 29.8 3.2 29 7-35 1-29 (34)
276 KOG1258 mRNA processing protei 95.1 3.1 6.6E-05 39.1 32.7 389 58-457 44-485 (577)
277 KOG3941 Intermediate in Toll s 95.0 0.31 6.7E-06 40.7 9.5 35 257-291 140-174 (406)
278 KOG1941 Acetylcholine receptor 94.8 0.92 2E-05 39.5 12.1 229 139-373 16-274 (518)
279 PF10602 RPN7: 26S proteasome 94.8 0.55 1.2E-05 37.3 10.3 94 347-440 38-138 (177)
280 KOG1941 Acetylcholine receptor 94.7 1.6 3.5E-05 38.1 13.3 166 60-226 84-273 (518)
281 PF09205 DUF1955: Domain of un 94.6 1.3 2.7E-05 32.6 12.1 132 287-440 14-145 (161)
282 COG3629 DnrI DNA-binding trans 94.6 0.4 8.8E-06 40.7 9.5 79 60-139 154-237 (280)
283 PF13170 DUF4003: Protein of u 94.5 3 6.4E-05 36.3 19.0 128 293-422 80-224 (297)
284 PF13431 TPR_17: Tetratricopep 94.4 0.049 1.1E-06 29.3 2.5 26 3-28 9-34 (34)
285 KOG3941 Intermediate in Toll s 94.3 0.48 1E-05 39.7 9.0 49 274-322 66-119 (406)
286 PF13176 TPR_7: Tetratricopept 94.3 0.1 2.2E-06 28.5 3.8 25 62-86 2-26 (36)
287 COG3629 DnrI DNA-binding trans 94.1 0.83 1.8E-05 38.9 10.3 77 312-389 155-236 (280)
288 PF10602 RPN7: 26S proteasome 94.0 1.2 2.6E-05 35.4 10.6 98 60-157 37-141 (177)
289 PF10345 Cohesin_load: Cohesin 93.9 7 0.00015 38.4 31.6 172 6-191 58-252 (608)
290 PF07035 Mic1: Colon cancer-as 93.9 2.4 5.2E-05 33.0 15.4 124 296-433 15-138 (167)
291 KOG2114 Vacuolar assembly/sort 93.8 7.5 0.00016 38.3 22.9 24 11-34 372-395 (933)
292 PF13374 TPR_10: Tetratricopep 93.7 0.18 3.8E-06 28.5 4.2 29 7-35 2-30 (42)
293 KOG2066 Vacuolar assembly/sort 93.7 7.6 0.00016 37.9 29.3 100 16-141 365-467 (846)
294 KOG0276 Vesicle coat complex C 92.9 2.1 4.6E-05 40.1 11.4 152 18-226 597-748 (794)
295 PF07575 Nucleopor_Nup85: Nup8 92.7 10 0.00022 36.9 20.2 76 260-337 390-465 (566)
296 PF08424 NRDE-2: NRDE-2, neces 92.7 6 0.00013 35.2 14.0 99 3-121 15-129 (321)
297 PF07035 Mic1: Colon cancer-as 92.4 4.3 9.4E-05 31.6 14.4 134 80-227 15-148 (167)
298 TIGR02561 HrpB1_HrpK type III 92.1 4.1 8.8E-05 30.8 11.6 23 66-88 51-73 (153)
299 PF13181 TPR_8: Tetratricopept 92.0 0.51 1.1E-05 25.1 4.3 28 8-35 2-29 (34)
300 PRK11619 lytic murein transgly 91.8 14 0.00031 36.4 33.4 52 60-112 130-181 (644)
301 PF06552 TOM20_plant: Plant sp 91.8 1.7 3.7E-05 34.0 8.2 95 10-124 31-137 (186)
302 KOG4234 TPR repeat-containing 91.7 2.3 4.9E-05 33.9 8.8 20 173-192 177-196 (271)
303 KOG4648 Uncharacterized conser 91.7 0.6 1.3E-05 40.2 6.2 53 15-86 105-158 (536)
304 PRK15180 Vi polysaccharide bio 91.2 12 0.00026 34.3 28.7 102 54-159 320-421 (831)
305 PF09613 HrpB1_HrpK: Bacterial 91.2 5.7 0.00012 30.6 12.9 53 139-193 20-73 (160)
306 PF00515 TPR_1: Tetratricopept 91.1 0.69 1.5E-05 24.6 4.2 27 382-408 3-29 (34)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 91.1 1.2 2.7E-05 30.5 5.9 61 361-422 23-83 (103)
308 PF07163 Pex26: Pex26 protein; 90.8 9.2 0.0002 32.4 12.9 137 5-152 33-181 (309)
309 PF11207 DUF2989: Protein of u 90.7 5.4 0.00012 32.0 10.2 77 357-435 119-198 (203)
310 PF07719 TPR_2: Tetratricopept 90.7 0.59 1.3E-05 24.8 3.7 29 61-89 3-31 (34)
311 COG2909 MalT ATP-dependent tra 90.6 20 0.00043 35.9 23.3 229 102-335 423-684 (894)
312 PRK15180 Vi polysaccharide bio 90.4 5.2 0.00011 36.6 10.9 125 282-409 296-420 (831)
313 KOG0276 Vesicle coat complex C 90.4 8.8 0.00019 36.3 12.5 27 346-372 667-693 (794)
314 PF13174 TPR_6: Tetratricopept 90.3 0.55 1.2E-05 24.6 3.3 28 9-36 2-29 (33)
315 PF11207 DUF2989: Protein of u 90.3 3.8 8.2E-05 32.9 9.0 72 327-399 123-197 (203)
316 PRK09687 putative lyase; Provi 90.2 12 0.00025 32.5 27.8 80 162-247 35-118 (280)
317 PF02284 COX5A: Cytochrome c o 90.0 2 4.3E-05 29.9 6.3 45 329-373 29-73 (108)
318 COG4785 NlpI Lipoprotein NlpI, 89.8 9.5 0.00021 31.0 17.1 201 50-269 54-266 (297)
319 COG2909 MalT ATP-dependent tra 89.8 23 0.00051 35.4 24.6 224 209-440 425-684 (894)
320 KOG2034 Vacuolar sorting prote 89.7 23 0.00051 35.4 27.7 300 15-373 366-695 (911)
321 KOG1550 Extracellular protein 89.7 21 0.00045 34.7 28.1 277 110-409 228-538 (552)
322 KOG4648 Uncharacterized conser 89.6 1.1 2.5E-05 38.6 6.1 91 66-158 104-194 (536)
323 KOG1550 Extracellular protein 89.6 21 0.00046 34.6 25.7 273 75-374 228-538 (552)
324 PF00637 Clathrin: Region in C 89.5 0.21 4.6E-06 38.1 1.7 128 316-462 13-140 (143)
325 PF13374 TPR_10: Tetratricopep 89.5 1.1 2.4E-05 25.0 4.5 27 381-407 3-29 (42)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 5.3 0.00012 27.5 9.0 50 325-374 22-71 (103)
327 COG0457 NrfG FOG: TPR repeat [ 89.3 11 0.00024 31.0 28.9 221 178-408 37-264 (291)
328 KOG2471 TPR repeat-containing 89.3 7.7 0.00017 35.7 11.0 108 318-427 248-381 (696)
329 COG4455 ImpE Protein of avirul 89.2 3.5 7.6E-05 33.4 8.0 75 63-138 5-81 (273)
330 PF07721 TPR_4: Tetratricopept 89.0 0.65 1.4E-05 23.0 2.7 24 8-31 2-25 (26)
331 KOG4642 Chaperone-dependent E3 88.8 10 0.00022 31.4 10.4 86 16-121 19-105 (284)
332 PF13181 TPR_8: Tetratricopept 88.7 1.2 2.6E-05 23.5 3.9 28 61-88 3-30 (34)
333 KOG2063 Vacuolar assembly/sort 88.5 31 0.00067 35.1 18.5 26 10-35 507-532 (877)
334 TIGR02561 HrpB1_HrpK type III 88.3 9.4 0.0002 29.0 11.1 55 69-124 20-74 (153)
335 KOG1920 IkappaB kinase complex 88.1 36 0.00078 35.4 23.2 20 418-437 1187-1206(1265)
336 smart00028 TPR Tetratricopepti 88.0 0.93 2E-05 23.1 3.3 28 8-35 2-29 (34)
337 KOG4570 Uncharacterized conser 87.7 14 0.00031 31.9 11.0 97 309-407 63-162 (418)
338 KOG4570 Uncharacterized conser 87.6 9.9 0.00021 32.8 10.1 103 194-304 59-164 (418)
339 KOG0890 Protein kinase of the 87.6 55 0.0012 37.0 23.8 63 275-340 1670-1732(2382)
340 COG3947 Response regulator con 87.2 18 0.00039 31.0 15.9 68 382-450 281-356 (361)
341 PF13174 TPR_6: Tetratricopept 87.1 0.94 2E-05 23.7 2.9 27 62-88 3-29 (33)
342 KOG2066 Vacuolar assembly/sort 87.0 33 0.00072 33.8 25.1 151 66-226 363-532 (846)
343 KOG0991 Replication factor C, 86.8 16 0.00036 30.1 15.7 154 279-443 134-301 (333)
344 PF10579 Rapsyn_N: Rapsyn N-te 86.8 2.7 5.8E-05 27.7 5.1 54 12-82 12-66 (80)
345 PF02284 COX5A: Cytochrome c o 86.7 8.7 0.00019 26.9 9.4 61 257-318 27-87 (108)
346 KOG0890 Protein kinase of the 85.9 69 0.0015 36.4 26.0 318 64-409 1388-1731(2382)
347 PF07163 Pex26: Pex26 protein; 85.8 21 0.00046 30.4 12.4 28 60-87 36-63 (309)
348 PF00637 Clathrin: Region in C 85.4 0.56 1.2E-05 35.8 1.9 53 101-153 14-66 (143)
349 COG4455 ImpE Protein of avirul 85.3 9 0.0002 31.2 8.3 56 282-338 8-63 (273)
350 PF08424 NRDE-2: NRDE-2, neces 85.2 27 0.00058 31.1 15.4 118 111-230 48-185 (321)
351 PF14561 TPR_20: Tetratricopep 84.9 10 0.00022 26.1 7.8 32 4-35 19-50 (90)
352 PRK09687 putative lyase; Provi 84.3 27 0.00058 30.3 29.5 79 127-211 35-117 (280)
353 PF02259 FAT: FAT domain; Int 84.3 31 0.00067 31.0 24.0 63 276-338 147-212 (352)
354 COG5159 RPN6 26S proteasome re 84.1 20 0.00044 30.5 10.2 24 203-226 129-152 (421)
355 KOG4521 Nuclear pore complex, 84.0 40 0.00086 35.1 13.6 172 12-191 925-1130(1480)
356 TIGR03504 FimV_Cterm FimV C-te 83.9 2.4 5.2E-05 24.4 3.5 26 64-89 4-29 (44)
357 PF13929 mRNA_stabil: mRNA sta 83.7 27 0.00059 30.0 15.3 115 309-423 163-286 (292)
358 PF10579 Rapsyn_N: Rapsyn N-te 83.6 4.5 9.7E-05 26.7 5.0 46 392-437 18-65 (80)
359 PF06552 TOM20_plant: Plant sp 83.5 7.8 0.00017 30.5 7.1 30 75-105 7-36 (186)
360 TIGR03504 FimV_Cterm FimV C-te 83.3 3.3 7.2E-05 23.8 3.9 24 205-228 5-28 (44)
361 PF02259 FAT: FAT domain; Int 83.0 35 0.00076 30.7 22.3 65 309-373 145-212 (352)
362 KOG4077 Cytochrome c oxidase, 82.8 6.4 0.00014 28.7 5.9 45 364-408 68-112 (149)
363 KOG4507 Uncharacterized conser 82.8 13 0.00028 35.2 9.3 118 56-175 604-721 (886)
364 PRK12798 chemotaxis protein; R 82.3 39 0.00085 30.8 20.6 207 60-274 114-329 (421)
365 PF04910 Tcf25: Transcriptiona 82.3 38 0.00083 30.7 18.7 110 4-122 37-167 (360)
366 KOG1308 Hsp70-interacting prot 82.0 1.2 2.5E-05 38.7 2.5 92 71-164 126-217 (377)
367 PRK10941 hypothetical protein; 81.8 19 0.00042 30.9 9.7 60 98-158 185-244 (269)
368 KOG2396 HAT (Half-A-TPR) repea 81.7 46 0.00099 31.1 37.5 394 3-438 101-553 (568)
369 COG1747 Uncharacterized N-term 80.1 53 0.0012 30.8 23.3 181 55-243 62-248 (711)
370 PF14561 TPR_20: Tetratricopep 80.0 15 0.00032 25.3 7.0 56 56-111 18-75 (90)
371 PF12862 Apc5: Anaphase-promot 79.7 11 0.00023 26.2 6.4 58 17-88 8-70 (94)
372 COG2976 Uncharacterized protei 78.7 33 0.00071 27.6 14.7 129 275-410 54-189 (207)
373 KOG1586 Protein required for f 78.5 37 0.00081 28.2 20.1 54 178-231 128-186 (288)
374 KOG4507 Uncharacterized conser 78.0 18 0.00038 34.3 8.6 133 75-210 589-721 (886)
375 KOG0376 Serine-threonine phosp 78.0 8.6 0.00019 35.3 6.6 105 13-139 10-115 (476)
376 KOG1308 Hsp70-interacting prot 76.4 1.9 4.1E-05 37.4 2.1 95 105-202 125-220 (377)
377 KOG0991 Replication factor C, 76.1 44 0.00096 27.8 10.5 80 5-92 192-271 (333)
378 COG1747 Uncharacterized N-term 75.5 73 0.0016 30.0 24.7 179 233-425 65-249 (711)
379 PF13929 mRNA_stabil: mRNA sta 75.2 54 0.0012 28.3 19.6 116 325-440 143-263 (292)
380 KOG2908 26S proteasome regulat 75.1 58 0.0012 28.8 10.3 91 346-436 76-178 (380)
381 PF09986 DUF2225: Uncharacteri 75.0 35 0.00076 28.2 9.0 90 319-408 86-193 (214)
382 PF05944 Phage_term_smal: Phag 74.8 33 0.00071 25.6 8.2 33 60-92 49-81 (132)
383 COG4976 Predicted methyltransf 74.6 15 0.00032 30.2 6.4 55 16-89 4-59 (287)
384 PRK10941 hypothetical protein; 74.3 34 0.00074 29.4 9.0 79 61-140 183-262 (269)
385 KOG2471 TPR repeat-containing 73.6 80 0.0017 29.6 16.7 114 14-142 247-382 (696)
386 PF11846 DUF3366: Domain of un 72.5 21 0.00046 28.8 7.3 33 376-408 140-172 (193)
387 PF04190 DUF410: Protein of un 72.3 62 0.0013 27.7 16.4 25 309-333 89-113 (260)
388 KOG2422 Uncharacterized conser 72.2 94 0.002 29.8 18.1 160 69-228 248-448 (665)
389 KOG1464 COP9 signalosome, subu 70.9 65 0.0014 27.4 20.1 59 279-337 149-218 (440)
390 KOG4077 Cytochrome c oxidase, 70.3 41 0.00088 24.8 7.4 47 258-304 67-113 (149)
391 COG0735 Fur Fe2+/Zn2+ uptake r 70.0 37 0.0008 25.9 7.6 61 83-144 10-70 (145)
392 PF14853 Fis1_TPR_C: Fis1 C-te 68.6 20 0.00043 21.7 4.6 26 10-35 4-29 (53)
393 PF14853 Fis1_TPR_C: Fis1 C-te 67.5 11 0.00024 22.8 3.4 34 386-421 7-40 (53)
394 PF09986 DUF2225: Uncharacteri 66.1 75 0.0016 26.3 10.9 26 63-88 169-194 (214)
395 PF07720 TPR_3: Tetratricopept 66.0 17 0.00038 19.7 3.7 24 8-31 2-25 (36)
396 PRK13342 recombination factor 65.5 1.2E+02 0.0025 28.3 18.3 38 212-249 243-280 (413)
397 PF10255 Paf67: RNA polymerase 65.3 35 0.00075 31.3 7.5 62 60-121 123-191 (404)
398 PF11848 DUF3368: Domain of un 65.1 26 0.00056 20.6 5.1 32 391-422 13-44 (48)
399 KOG1586 Protein required for f 64.9 82 0.0018 26.3 15.1 94 135-228 119-224 (288)
400 PHA02875 ankyrin repeat protei 64.9 80 0.0017 29.3 10.4 209 104-345 9-230 (413)
401 KOG4642 Chaperone-dependent E3 64.7 84 0.0018 26.3 15.1 118 68-188 19-141 (284)
402 cd00280 TRFH Telomeric Repeat 64.6 63 0.0014 25.7 7.7 22 352-373 118-139 (200)
403 cd08819 CARD_MDA5_2 Caspase ac 63.7 44 0.00095 22.7 6.7 35 141-180 48-82 (88)
404 PF10345 Cohesin_load: Cohesin 63.6 1.6E+02 0.0035 29.2 35.7 179 46-225 44-251 (608)
405 COG0735 Fur Fe2+/Zn2+ uptake r 63.4 63 0.0014 24.7 7.7 64 186-250 8-71 (145)
406 PF14689 SPOB_a: Sensor_kinase 62.7 29 0.00062 21.8 4.8 24 384-407 27-50 (62)
407 KOG0376 Serine-threonine phosp 62.4 27 0.00058 32.3 6.2 106 318-429 12-119 (476)
408 PF14689 SPOB_a: Sensor_kinase 61.9 22 0.00048 22.3 4.2 27 201-227 25-51 (62)
409 PF11846 DUF3366: Domain of un 61.7 46 0.001 26.9 7.2 43 401-445 132-175 (193)
410 KOG1464 COP9 signalosome, subu 61.5 1E+02 0.0022 26.3 17.9 175 54-228 21-220 (440)
411 TIGR02508 type_III_yscG type I 60.9 55 0.0012 23.0 8.1 79 325-410 20-98 (115)
412 PF09454 Vps23_core: Vps23 cor 60.3 16 0.00036 23.2 3.4 52 56-108 5-56 (65)
413 PF04910 Tcf25: Transcriptiona 60.3 1.4E+02 0.0029 27.3 17.5 58 351-408 109-167 (360)
414 KOG0686 COP9 signalosome, subu 59.5 1.4E+02 0.0031 27.3 12.6 179 131-318 152-352 (466)
415 KOG0545 Aryl-hydrocarbon recep 59.0 1.1E+02 0.0024 25.8 11.6 104 8-123 179-293 (329)
416 PF11817 Foie-gras_1: Foie gra 59.0 64 0.0014 27.4 7.8 53 350-402 183-240 (247)
417 PRK13342 recombination factor 58.6 1.6E+02 0.0034 27.5 15.5 55 107-161 243-302 (413)
418 PRK11619 lytic murein transgly 58.6 2E+02 0.0044 28.7 38.1 322 94-439 99-463 (644)
419 PF15297 CKAP2_C: Cytoskeleton 58.4 69 0.0015 28.5 7.8 45 96-140 142-186 (353)
420 COG5108 RPO41 Mitochondrial DN 58.3 45 0.00098 32.4 7.1 76 349-427 32-115 (1117)
421 COG5159 RPN6 26S proteasome re 58.3 1.2E+02 0.0027 26.1 20.6 96 279-374 129-235 (421)
422 PF11768 DUF3312: Protein of u 57.5 1.8E+02 0.0039 27.9 11.2 22 65-86 414-435 (545)
423 COG5108 RPO41 Mitochondrial DN 56.7 78 0.0017 30.9 8.3 122 315-446 33-164 (1117)
424 KOG2396 HAT (Half-A-TPR) repea 56.6 1.8E+02 0.0039 27.5 32.9 390 54-463 100-546 (568)
425 PRK10564 maltose regulon perip 56.6 26 0.00057 30.3 5.0 44 54-97 251-295 (303)
426 PF12862 Apc5: Anaphase-promot 56.4 64 0.0014 22.3 7.0 22 386-407 47-68 (94)
427 PF11848 DUF3368: Domain of un 56.3 39 0.00085 19.8 5.1 31 211-241 14-44 (48)
428 COG4259 Uncharacterized protei 56.1 67 0.0015 22.4 5.8 49 401-449 58-107 (121)
429 PF10366 Vps39_1: Vacuolar sor 56.0 42 0.00091 24.0 5.3 27 61-87 41-67 (108)
430 KOG4521 Nuclear pore complex, 56.0 2.6E+02 0.0056 29.7 12.0 131 7-154 983-1127(1480)
431 COG3947 Response regulator con 54.9 1.4E+02 0.0031 25.9 16.8 75 148-224 106-191 (361)
432 PF11817 Foie-gras_1: Foie gra 54.7 85 0.0019 26.6 7.9 63 11-85 182-244 (247)
433 KOG3807 Predicted membrane pro 54.7 1.5E+02 0.0033 26.1 10.4 23 135-157 281-303 (556)
434 TIGR02508 type_III_yscG type I 54.1 75 0.0016 22.4 7.8 78 145-229 21-98 (115)
435 KOG2063 Vacuolar assembly/sort 53.7 2.8E+02 0.006 28.8 19.0 117 131-247 506-639 (877)
436 KOG0551 Hsp90 co-chaperone CNS 53.1 1.3E+02 0.0028 26.7 8.4 89 66-155 88-179 (390)
437 PF13762 MNE1: Mitochondrial s 52.8 1E+02 0.0022 23.5 10.5 50 379-428 78-128 (145)
438 PF13934 ELYS: Nuclear pore co 52.1 1.4E+02 0.0031 24.9 14.5 172 4-221 23-198 (226)
439 KOG3364 Membrane protein invol 51.7 1E+02 0.0022 23.2 9.3 67 342-408 29-99 (149)
440 cd08819 CARD_MDA5_2 Caspase ac 50.7 78 0.0017 21.6 6.8 67 77-149 20-86 (88)
441 KOG4567 GTPase-activating prot 50.3 1.3E+02 0.0029 26.3 7.9 71 330-405 263-343 (370)
442 KOG4567 GTPase-activating prot 50.1 1.1E+02 0.0024 26.7 7.4 72 295-371 263-344 (370)
443 smart00386 HAT HAT (Half-A-TPR 49.8 34 0.00074 17.2 3.7 15 74-88 2-16 (33)
444 PF03745 DUF309: Domain of unk 49.5 64 0.0014 20.3 6.1 49 390-438 9-62 (62)
445 PF11663 Toxin_YhaV: Toxin wit 48.9 31 0.00066 25.7 3.6 31 141-173 107-137 (140)
446 PRK10564 maltose regulon perip 48.8 42 0.00091 29.1 5.0 29 384-412 261-289 (303)
447 PF10516 SHNi-TPR: SHNi-TPR; 48.7 40 0.00087 18.6 3.3 28 8-35 2-29 (38)
448 PF09868 DUF2095: Uncharacteri 48.3 64 0.0014 23.1 4.9 32 64-96 66-97 (128)
449 COG4941 Predicted RNA polymera 47.2 2.1E+02 0.0045 25.5 11.8 122 215-339 272-394 (415)
450 PF11663 Toxin_YhaV: Toxin wit 47.0 28 0.00061 25.9 3.2 16 113-128 114-129 (140)
451 PF12069 DUF3549: Protein of u 45.6 2.3E+02 0.0049 25.4 13.2 141 277-427 168-310 (340)
452 COG0790 FOG: TPR repeat, SEL1 45.6 2.1E+02 0.0044 24.9 24.2 88 179-271 128-222 (292)
453 KOG3636 Uncharacterized conser 45.4 2.5E+02 0.0055 26.0 13.8 192 54-247 49-273 (669)
454 PRK14700 recombination factor 45.1 2.1E+02 0.0047 25.0 9.5 66 205-271 129-197 (300)
455 PF00244 14-3-3: 14-3-3 protei 45.0 1.9E+02 0.0041 24.4 9.3 160 281-440 7-194 (236)
456 PF02184 HAT: HAT (Half-A-TPR) 45.0 46 0.001 17.6 2.9 26 22-66 2-27 (32)
457 PF09670 Cas_Cas02710: CRISPR- 44.8 2.5E+02 0.0055 25.8 12.0 52 286-338 142-197 (379)
458 PF04090 RNA_pol_I_TF: RNA pol 44.8 1.6E+02 0.0034 24.1 7.3 53 60-113 42-95 (199)
459 PF15297 CKAP2_C: Cytoskeleton 44.7 2.3E+02 0.0051 25.4 9.1 63 111-175 120-186 (353)
460 PHA02875 ankyrin repeat protei 44.0 2.7E+02 0.0058 25.8 15.4 113 101-222 39-155 (413)
461 KOG0530 Protein farnesyltransf 44.0 2.1E+02 0.0045 24.6 20.8 216 22-244 41-269 (318)
462 PRK14700 recombination factor 43.5 2.3E+02 0.0049 24.9 14.9 64 97-160 126-197 (300)
463 KOG1839 Uncharacterized protei 43.4 3.5E+02 0.0075 29.2 11.0 154 66-219 939-1119(1236)
464 PHA02537 M terminase endonucle 42.5 2E+02 0.0044 24.1 9.7 148 262-428 70-230 (230)
465 PF13762 MNE1: Mitochondrial s 41.7 1.6E+02 0.0034 22.6 11.8 82 60-141 40-127 (145)
466 PF12968 DUF3856: Domain of Un 41.3 1.4E+02 0.0031 21.9 8.3 64 7-85 55-126 (144)
467 PF10366 Vps39_1: Vacuolar sor 41.1 1.3E+02 0.0029 21.5 8.0 27 96-122 41-67 (108)
468 cd07153 Fur_like Ferric uptake 41.0 1E+02 0.0022 22.2 5.6 44 101-144 7-50 (116)
469 PF11768 DUF3312: Protein of u 40.8 3.4E+02 0.0074 26.1 11.3 62 97-158 411-473 (545)
470 PF09670 Cas_Cas02710: CRISPR- 40.8 2.9E+02 0.0064 25.4 10.7 57 208-269 140-198 (379)
471 PRK13800 putative oxidoreducta 40.3 4.7E+02 0.01 27.6 29.2 254 161-449 632-886 (897)
472 KOG0889 Histone acetyltransfer 40.2 8.1E+02 0.018 30.3 17.7 23 64-86 2487-2509(3550)
473 KOG2659 LisH motif-containing 39.7 2.2E+02 0.0048 23.7 9.2 22 351-372 70-91 (228)
474 PRK14951 DNA polymerase III su 39.5 4E+02 0.0086 26.5 11.7 19 108-126 264-282 (618)
475 cd07153 Fur_like Ferric uptake 38.3 89 0.0019 22.5 4.9 46 351-396 6-51 (116)
476 PF04124 Dor1: Dor1-like famil 38.1 97 0.0021 27.9 6.0 23 12-34 111-133 (338)
477 KOG0545 Aryl-hydrocarbon recep 38.0 2.5E+02 0.0055 23.8 9.5 96 312-408 180-292 (329)
478 PF06957 COPI_C: Coatomer (COP 37.8 3.4E+02 0.0074 25.3 14.0 41 12-52 123-163 (422)
479 COG4003 Uncharacterized protei 37.8 1.1E+02 0.0024 20.4 4.4 31 64-95 36-66 (98)
480 PRK06645 DNA polymerase III su 37.5 3.2E+02 0.0069 26.4 9.4 30 97-127 261-290 (507)
481 KOG0551 Hsp90 co-chaperone CNS 36.9 3.1E+02 0.0067 24.5 8.2 95 96-192 83-181 (390)
482 COG5191 Uncharacterized conser 36.9 1.2E+02 0.0025 26.7 5.7 75 57-133 105-180 (435)
483 PF04090 RNA_pol_I_TF: RNA pol 36.5 2.4E+02 0.0051 23.0 7.6 61 8-86 42-103 (199)
484 PF12002 MgsA_C: MgsA AAA+ ATP 36.3 2.1E+02 0.0047 22.5 9.4 57 214-271 3-59 (168)
485 KOG1839 Uncharacterized protei 36.1 6E+02 0.013 27.6 11.6 142 262-403 960-1122(1236)
486 KOG1114 Tripeptidyl peptidase 36.0 5.3E+02 0.012 27.0 14.8 66 184-249 1216-1282(1304)
487 COG0790 FOG: TPR repeat, SEL1 35.6 3E+02 0.0064 23.9 24.8 45 328-375 173-221 (292)
488 PF07575 Nucleopor_Nup85: Nup8 35.5 4.4E+02 0.0096 25.9 19.6 77 295-373 390-466 (566)
489 PF04781 DUF627: Protein of un 35.5 1.7E+02 0.0037 21.1 8.9 27 15-41 4-30 (111)
490 PF09454 Vps23_core: Vps23 cor 35.3 1.2E+02 0.0026 19.3 4.6 30 311-340 9-38 (65)
491 PRK14958 DNA polymerase III su 34.8 4.3E+02 0.0093 25.6 11.6 35 93-128 245-279 (509)
492 cd02682 MIT_AAA_Arch MIT: doma 34.6 1.4E+02 0.003 19.8 6.7 54 8-70 7-60 (75)
493 PF07678 A2M_comp: A-macroglob 34.6 2.3E+02 0.0049 24.1 7.4 30 309-338 131-160 (246)
494 KOG3677 RNA polymerase I-assoc 34.4 1.8E+02 0.0039 26.7 6.7 58 168-226 239-299 (525)
495 KOG1524 WD40 repeat-containing 34.3 3.1E+02 0.0067 26.2 8.3 30 4-33 570-599 (737)
496 KOG3807 Predicted membrane pro 34.3 3.4E+02 0.0073 24.2 12.2 73 153-229 264-341 (556)
497 PF01475 FUR: Ferric uptake re 34.3 1.1E+02 0.0023 22.3 4.8 46 99-144 12-57 (120)
498 PRK11639 zinc uptake transcrip 32.9 2.5E+02 0.0053 22.2 7.6 48 98-145 29-76 (169)
499 KOG2223 Uncharacterized conser 32.2 3.7E+02 0.0079 25.0 8.2 32 194-225 469-500 (586)
500 PF07678 A2M_comp: A-macroglob 32.2 2.6E+02 0.0057 23.7 7.5 80 147-228 117-221 (246)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-64 Score=488.14 Aligned_cols=433 Identities=18% Similarity=0.298 Sum_probs=377.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
|+..+|+.++.+|.+.|++++|.++|+.|.+. |..||..+|+.++.+|.+.|++++|.++|++
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-----------------Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e 497 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-----------------GLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----------------CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 56777777777777777777777777777644 7788889999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh--CCCCC
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK--RGLHA 162 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 162 (464)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++|++|.. .++.|
T Consensus 498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P 577 (1060)
T PLN03218 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence 9988888899999999999999999999999999999889999999999999999999999999999999976 57788
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 242 (464)
|..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999989889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047873 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322 (464)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (464)
+|++.|+. ++|.++++.|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 658 a~~k~G~~------eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 658 VAGHAGDL------DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHhCCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99988876 589999999999999999999999999999999999999999999888889999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----c-----
Q 047873 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----H----- 393 (464)
Q Consensus 323 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----- 393 (464)
.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ +
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998899999999999999999999999999999999998999999999988865432 1
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchhHHHHhhcc
Q 047873 394 --------------GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL---VSDYACYTSLVSK 456 (464)
Q Consensus 394 --------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~p~~~~~~~ll~~ 456 (464)
+..++|..+|++|++.|+.||..||+.++.+++..+..+.+..+++++++ .|+..+|++||.+
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 12367888999999999999999999999777788888888888887654 4457889999998
Q ss_pred chhh
Q 047873 457 SSKY 460 (464)
Q Consensus 457 ~~~~ 460 (464)
++++
T Consensus 892 ~~~~ 895 (1060)
T PLN03218 892 FGEY 895 (1060)
T ss_pred hccC
Confidence 8765
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-63 Score=483.67 Aligned_cols=450 Identities=18% Similarity=0.272 Sum_probs=410.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh---------------cCCCCChhhHHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET---------------RGTHLPGLVLDALMIVY 69 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~ 69 (464)
++...|..++..|.+.|++++|+++|+.|...+-..+...++..++.. .-..|+..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456778888888889999999999999997554344443333322211 01237889999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG--SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.|+.|+..+|+.+|.+|++.|++ ++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~------deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDW------DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999887 699999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 387 (464)
|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHh---c
Q 047873 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----H-------------------GNPEDFDKLQSE---K 441 (464)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~---~ 441 (464)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..++++ .
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876542 1 123567788776 5
Q ss_pred CCCCchhHHHHhhccchhh
Q 047873 442 GLVSDYACYTSLVSKSSKY 460 (464)
Q Consensus 442 ~~~p~~~~~~~ll~~~~~~ 460 (464)
|+.||..||.++|.++.+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred CCCCCHHHHHHHHHHhccc
Confidence 9999999999999766443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-61 Score=476.54 Aligned_cols=440 Identities=19% Similarity=0.243 Sum_probs=329.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh-------------------cCCCCChhh---
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-------------------RGTHLPGLV--- 61 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~--- 61 (464)
++++.+|+.+|.+|.+.|++++|+++|++|.. .|..++..++..+++. .|..|+..+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 47899999999999999999999999999974 5788887777666553 133444444
Q ss_pred ----------------------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhH
Q 047873 62 ----------------------------LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113 (464)
Q Consensus 62 ----------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 113 (464)
|+.++.+|.+.|++++|+++|++|...|+.|+..+|+.++.++++.|+.+.+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 4555555555555555555555555555566666666666666666666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6666666666666666666667777777777777777777765 346677777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|+++ +|.++|++|.+ +
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~------~A~~vf~~m~~----~ 453 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID------KALEVFHNIPE----K 453 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH------HHHHHHHhCCC----C
Confidence 7777877887777777777777777777777777777777778888888888877664 56665555532 3
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHH----------------------------------HHcCCCCCHHHHHHHHHH
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEM----------------------------------IKRGIELDNVAFTALISG 319 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~ 319 (464)
|..+|+.++.+|++.|+.++|..+|++| .+.|+.++..+++.++.+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 4445555555555555555555555555 444444444455555555
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
|++.|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|
T Consensus 534 y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 66666666666666554 4788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchhHHHHhhccchhhhhc
Q 047873 400 NMLLDTML-DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQK 463 (464)
Q Consensus 400 ~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 463 (464)
.++|+.|. +.|+.|+..+|+.++.+|++.|++++|.++++++.+.||..+|++|+.+|..+++.
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999 68999999999999999999999999999999999999999999999999877653
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-60 Score=461.80 Aligned_cols=437 Identities=18% Similarity=0.270 Sum_probs=273.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh-------------------cCCCCChhhHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-------------------RGTHLPGLVLDAL 65 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l 65 (464)
.+..+|+.++..|.+.|++++|+++|+.|....+..++..++..++.. .|..|+..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345689999999999999999999999997554444444443333322 3555656666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+.+|.+.|++++|.++|++|.+ |+..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|+..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 6666666666666666665542 455566666666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666654 345566666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
.+.|+.||..+|+.++.+|++.|+. ++|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|.+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~------~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALL------EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccch------HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 6666666666666666666665554 36666666666666666666666666666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcCHHHHH
Q 047873 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYN 384 (464)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 384 (464)
||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+. ++.|+..+|+
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 3555666666666666666666666666666666666666666666666666666666666666543 5566666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHhhccchhhhh
Q 047873 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-YACYTSLVSKSSKYRQ 462 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~ 462 (464)
.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|.+++++ .++.|+ ..+|..|+..|++.|+
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 6666666666666666665544 3556666666666666666666666665555 455553 4466666666555544
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-59 Score=451.88 Aligned_cols=423 Identities=21% Similarity=0.301 Sum_probs=389.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhc---------------CCCCChhhHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR---------------GTHLPGLVLDALMI 67 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 67 (464)
+.++..+|+.++.++.+.|+++.|.+++..+. ..|..++..++..++... =..|+..+|+.++.
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 55778888888888888888888888888776 456666666666666531 12467799999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (464)
+|.+.|++++|+++|++|.+.|+.|+..+|..++.++.+.|....+.+++..+.+.|..||..+++.|+.+|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+
T Consensus 278 A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 278 ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999974 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.|+.||..+|+.++.+|++.|++ ++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~------~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRM------EDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCH------HHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999887 699999999954 78899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLK-VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
||..+|+.++.+|.+.|..++|..+|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+++
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 9999999999999999999999999999986 589999999999999999999999999998765 467999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh---cCCCC
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~p 445 (464)
+.+|...|+++.|..+++++.+ +.| +..+|..+++.|++.|++++|.+++++ .|+.+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999975 455 577999999999999999999999876 46643
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-58 Score=458.72 Aligned_cols=453 Identities=18% Similarity=0.227 Sum_probs=337.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh--------------cC-CCCChhhHHHHH
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--------------RG-THLPGLVLDALM 66 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~l~ 66 (464)
+++++..+|..++.++...+.++.|..++..+++. +......+...++.. .. .+||..+|+.++
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 45677777777777777777777777777776633 333333333332221 01 245668999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 047873 67 IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (464)
.+|.+.|++++|+++|++|...|+.|+..+|..++.+|...++...+.+++..+.+.|..||..+++.++.+|++.|+++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 99999999999999999999888889988888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
.|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.
T Consensus 240 ~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 240 SARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 88888888763 56778888888888888888888888888888888888888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCccc-------------------------ccCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 047873 227 ERGLTPNDVIFTTLIDGHCKNGRIDM-------------------------AGDMKEARKIVDEMCTNGLNPDKITYTIL 281 (464)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (464)
+.|+.||..+|+.++.+|++.|+++. .|++++|+++|++|...|+.||..+|+.+
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 77777787777777777777776643 24445666666666666666666666666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 361 (464)
+.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCH
Confidence 666666666666666666666666666666666666666666666666666655532 2333344444444444444
Q ss_pred HHHHHHHHHHHhC----------------------------------CC------------------------------C
Q 047873 362 KTGFRLLKEMRSD----------------------------------GH------------------------------L 377 (464)
Q Consensus 362 ~~a~~~~~~~~~~----------------------------------~~------------------------------~ 377 (464)
++|..+|++|... |+ .
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~ 551 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcC
Confidence 4444444444321 11 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCchhHHHHh
Q 047873 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE----KGLVSDYACYTSL 453 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~p~~~~~~~l 453 (464)
||..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+++++ .|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 566778899999999999999999999999999999999999999999999999999998875 5899999999999
Q ss_pred hccchhhhhc
Q 047873 454 VSKSSKYRQK 463 (464)
Q Consensus 454 l~~~~~~~~~ 463 (464)
++++++.|+.
T Consensus 632 v~~l~r~G~~ 641 (857)
T PLN03077 632 VDLLGRAGKL 641 (857)
T ss_pred HHHHHhCCCH
Confidence 9999998863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6e-29 Score=252.99 Aligned_cols=423 Identities=14% Similarity=0.072 Sum_probs=282.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
.|.++..|..++.++...|++++|.+.|++++. ..|+. .++..++..+...|++++|.+.
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALS-------------------IEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------------------hCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345666777777777777777777777777662 23333 5666677777777777777777
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
|+++...+ +.+..++..+...+...|++++|..+++++.+.++. +...+..++..+...|++++|..+++.+.... +
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 77776654 345566666777777777777777777777665543 55566667777777777777777777776543 3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 241 (464)
.+...|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|..+|+++.+.. +.+...+..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 455667777777777777777777777776543 3345566667777777777777777777776653 22466666777
Q ss_pred HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
..+...|++ ++|..+++.+.... +.+...+..+...+...|++++|...++.+...+. +..++..+..++.
T Consensus 677 ~~~~~~~~~------~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~ 747 (899)
T TIGR02917 677 QLLLAAKRT------ESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALL 747 (899)
T ss_pred HHHHHcCCH------HHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHH
Confidence 777776655 47777777776654 33555666677777777777777777777776643 3356666677777
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 047873 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401 (464)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 401 (464)
+.|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.++..++.+...+...|+ .+|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 7777777777777776654 4456667777777777777777777777777653 3466667777777777777 66777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC-chhHHHHhhccchhhhh
Q 047873 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVS-DYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p-~~~~~~~ll~~~~~~~~ 462 (464)
+++++.+.. +.+..++..+..++...|++++|.+.+++ +...| +..++..+...+.+.|+
T Consensus 825 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 825 YAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 777776542 23555666677777777777777777776 44444 56666666655555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-28 Score=247.44 Aligned_cols=401 Identities=12% Similarity=0.049 Sum_probs=353.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+..++..++..+...|++++|.+.|++++. ..|+. .++..+...+.+.|++++|+.+|
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLT-------------------IDPKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55677889999999999999999999999984 33444 88999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+++...+ +.+...+..++..+...|++++|..+++.+.+..+ .+...|..+..++...|++++|...|+.+.+.. +.
T Consensus 557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9998876 55677888899999999999999999999987654 478899999999999999999999999998764 44
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 242 (464)
+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 67788899999999999999999999998764 4467889999999999999999999999998875 347778888888
Q ss_pred HHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047873 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322 (464)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (464)
.+...|++ ++|...|+.+.... |+..++..++.++.+.|++++|.+.++.+.+..+. +...+..+...|..
T Consensus 712 ~~~~~g~~------~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~ 782 (899)
T TIGR02917 712 LYLRQKDY------PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLA 782 (899)
T ss_pred HHHHCCCH------HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99988876 69999999998864 44467788899999999999999999999987654 78899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402 (464)
Q Consensus 323 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 402 (464)
.|++++|..+|+++.+.. +.+...+..+...+...|+ .+|+..++++.+.. +-+...+..+...+...|++++|.++
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876 5678899999999999999 88999999998863 33567788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047873 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441 (464)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 441 (464)
++++.+.+. .+..++..+..++.+.|++++|.++++++
T Consensus 860 ~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 860 LRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998753 38999999999999999999999999873
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=9.1e-24 Score=184.80 Aligned_cols=424 Identities=16% Similarity=0.116 Sum_probs=345.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCC----------------hHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGS----------------SASLFASILETRGTHLPG-LVLDALMIVYVD 71 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 71 (464)
....|.+-+.+.|++++|++....+-.+..... +...--+.... ...|.- .+|+.+.+.+..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~-r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAI-RKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhh-hccchHHHHHHHHHHHHHH
Confidence 345677888899999999998776654333221 11111112222 233333 899999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
.|++++|+..++.+.+.. +-..++|..+..++...|+.+.|.+.|...++.++. .....+.+...+-..|+.++|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999999986 446889999999999999999999999999986532 334445566667778999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
|.+..+.. +--...|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.+++|...|.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 98877652 223678999999999999999999999999876 444 567889999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 047873 231 TP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308 (464)
Q Consensus 231 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (464)
.| ....+..+...|...|.. +-|+..+++.+.. .|+ ...|+.|..++-..|+..+|.+.+.+.+...+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~l------dlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~- 352 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLL------DLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN- 352 (966)
T ss_pred CCcchhhccceEEEEeccccH------HHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-
Confidence 34 466677777778887776 5999999999885 444 678999999999999999999999999988654
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALM 387 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 387 (464)
.....+.|...+...|.++.|..+|....+.. +--...++.|...|-++|++++|+..|++.+. +.|+ ...|+.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 57789999999999999999999999998853 22356789999999999999999999999998 5666 56899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHhh
Q 047873 388 NGLCKHGQLKNANMLLDTMLDLGVVPD-DITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-YACYTSLV 454 (464)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~ll 454 (464)
..|-..|+.+.|...+.+.+. +.|. ...++-|...|..+|++.+|+.-+++ +.++|| +..+-.++
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 999999999999999999986 4564 66788999999999999999999998 889998 33333333
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=3.7e-21 Score=184.80 Aligned_cols=406 Identities=10% Similarity=-0.043 Sum_probs=297.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
..+...+..+...|++++|++.|++++ ...|+...|..+..+|.+.|++++|++.++...+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al-------------------~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAI-------------------ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346678899999999999999999998 5677778899999999999999999999999998
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh----------
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK---------- 157 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 157 (464)
.+ |....++..+..++...|++++|+.-+..+...+...+... ..++..+........+...++.-..
T Consensus 189 l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~ 266 (615)
T TIGR00990 189 LD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGN 266 (615)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 86 45677899999999999999999988877665432212211 1111111110001111111110000
Q ss_pred ---------------C--CCCCC-cccHHHHHHHH---HhcCChhHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 047873 158 ---------------R--GLHAT-AVSFNTLINGH---CKAKNLDEGFRLKSVMEGSG-MRP-DVYTYSALINGLCKENR 214 (464)
Q Consensus 158 ---------------~--~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 214 (464)
. ...+. ...+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+..++...|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~ 346 (615)
T TIGR00990 267 YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK 346 (615)
T ss_pred HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Confidence 0 00000 01111111111 12467899999999998764 223 45678888889999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHH
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 294 (464)
+++|+..|++..+... .....|..+...+...|++ ++|...|+++.... +.+..++..+...+...|++++|
T Consensus 347 ~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~------~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 347 HLEALADLSKSIELDP-RVTQSYIKRASMNLELGDP------DKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999988632 2466788888888888776 69999999998764 33577888899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
...|++.++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|.+.|++....
T Consensus 419 ~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999999988654 67778888999999999999999999998764 446788999999999999999999999999886
Q ss_pred CCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC
Q 047873 375 GHLPAV------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVS 445 (464)
Q Consensus 375 ~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p 445 (464)
....+. ..++..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+++++ ..+.+
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 321111 112222333445799999999999988753 23556788899999999999999999987 34444
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.1e-21 Score=200.61 Aligned_cols=415 Identities=10% Similarity=0.024 Sum_probs=307.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|.+..++..|+.+|.+.|++++|+..|++++..............++.. ..-.........+.+.|++++|+..|+
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~----~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV----NRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh----hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4567788888888888888888888888887432211111111111100 000112234567789999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC---
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL--- 160 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 160 (464)
++.... |.+..++..+...+...|++++|++.|+++++..+. +...+..+...+. .++.++|..+++.+.....
T Consensus 376 ~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 376 QARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 999886 456777888999999999999999999999987654 5667777777774 4678999998877643210
Q ss_pred -----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047873 161 -----HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235 (464)
Q Consensus 161 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 235 (464)
......+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHH
Confidence 0012345567778889999999999999998764 335667788999999999999999999999876422 444
Q ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH---------hHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047873 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI---------TYTILLDGFCKEGDLESALDIRKEMIKRGI 306 (464)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (464)
.+..+...+...++. ++|+..++.+......++.. .+......+...|+.++|..+++. .
T Consensus 531 ~~~a~al~l~~~~~~------~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 531 QVYAYGLYLSGSDRD------RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred HHHHHHHHHHhCCCH------HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 444444445555554 68999888765432222211 123456778899999999999872 2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|++.++.+.+.. +.+...+..+
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~l 677 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRV 677 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHH
Confidence 3466778889999999999999999999999875 4567889999999999999999999999888752 2356677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGV--VP---DDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..++...|++++|.++++++..... .| +...+..+...+...|++++|.+.+++
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999999999999999999986421 12 224566678889999999999999887
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-22 Score=177.80 Aligned_cols=380 Identities=17% Similarity=0.096 Sum_probs=320.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.-.++|+-+.+.+-.+|++.+|+.+|+.++ ...|+. ..|..+..++...|+.+.|.+.|.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~ai-------------------el~p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAI-------------------ELKPKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHH-------------------hcCchhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 446789999999999999999999999999 667777 999999999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
...+.+ |...-....+...+...|+..+|...|.+.++..+. -..+|+.|...+-..|+.-.|++.|++..+. .|+
T Consensus 175 ~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 175 EALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred HHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc
Confidence 988875 222333445666667789999999999999986543 5678999999999999999999999999876 444
Q ss_pred -cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047873 164 -AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241 (464)
Q Consensus 164 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 241 (464)
...|-.|...|...+.++.|...|.+.... .| ....+..+...|...|.++-|+..|++..+..+. =...|+.|.
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 578999999999999999999999988765 44 4667888888999999999999999999987322 367899999
Q ss_pred HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
.++...|++ .+|...+.+.....+ ......+.|..++...|.++.|..+|....+-.+. -...++.|...|-
T Consensus 328 nALkd~G~V------~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 328 NALKDKGSV------TEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYK 399 (966)
T ss_pred HHHHhccch------HHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHH
Confidence 999998877 599999999987532 23567888999999999999999999999887433 3567899999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHH
Q 047873 322 RGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 399 (464)
++|++++|+..+++..+. .|+ ...|+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|...|-..|+..+|
T Consensus 400 qqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred hcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHH
Confidence 999999999999999885 555 578999999999999999999999999985 444 56789999999999999999
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHH
Q 047873 400 NMLLDTMLDLGVVPDD-ITYNILLEG 424 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~-~~~~~l~~~ 424 (464)
+.-++..++ ++||. ..+--++.+
T Consensus 476 I~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 476 IQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHc--cCCCCchhhhHHHHH
Confidence 999999986 56763 334444443
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1e-20 Score=193.39 Aligned_cols=419 Identities=11% Similarity=0.041 Sum_probs=269.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCC------------------ChHHHHHHHHHhcCC---------
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG------------------SSASLFASILETRGT--------- 55 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~--------- 55 (464)
.|.++..+..+..++...|++++|++.|+++....... .+...+...+.....
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~ 256 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHH
Confidence 36678889999999999999999999999987532211 001111111111000
Q ss_pred --------CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC
Q 047873 56 --------HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 56 --------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
.++. .........+...|++++|+..|++..+.. |.+..++..+...+.+.|++++|+..|+++++..+.
T Consensus 257 ~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 0011 111233566788899999999999998875 457788899999999999999999999999886643
Q ss_pred CCh-hhH------------HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 127 PSV-YVF------------NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 127 ~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
... ..+ ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 221 111 123456778999999999999998874 345667778889999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHH
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT--------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 265 (464)
. +.+...+..+...+. .++.++|+.+++.+...... .....+..+...+...|++ ++|++.|++
T Consensus 415 ~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~------~eA~~~~~~ 486 (1157)
T PRK11447 415 D-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW------AQAAELQRQ 486 (1157)
T ss_pred C-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH------HHHHHHHHH
Confidence 3 223444444444442 23444444444433211000 0011122233333333333 355555555
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------------
Q 047873 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF-------------------------------- 313 (464)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------------- 313 (464)
.....+ -+...+..+...|.+.|++++|...++++.+..+. +...+
T Consensus 487 Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 487 RLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 444321 12333444444445555555555555544443221 22222
Q ss_pred ------------HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH
Q 047873 314 ------------TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381 (464)
Q Consensus 314 ------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (464)
..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+..
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~ 638 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNAD 638 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2234455566666666666651 24556677888899999999999999999999863 33678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+..++..|...|++++|++.++.+.+.. +.+...+..+..++...|++++|.+++++
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999999999999999999999887642 23566677788889999999999999998
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=7.9e-21 Score=181.86 Aligned_cols=334 Identities=11% Similarity=0.018 Sum_probs=271.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
..++..+.+.|++++|+.+++.++ ...|+. ..+..++......|++++|+..|+++....
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l-------------------~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~ 106 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRV-------------------LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN 106 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHH-------------------HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC
Confidence 345666778899999999999988 344555 778888888889999999999999999886
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHH
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (464)
|.+...+..+...+...|++++|...+++++...+. +...+..++..+...|++++|...++.+.... +.+...+..
T Consensus 107 -P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~ 183 (656)
T PRK15174 107 -VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIAT 183 (656)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 556788899999999999999999999999987654 67888899999999999999999999887653 223333433
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (464)
+ ..+...|++++|...++.+.+....++......+...+...|++++|+..++++.+... .+...+..+...+...|+
T Consensus 184 ~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 3 45788999999999999987764333445556667888999999999999999998753 367778889999999998
Q ss_pred cccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 047873 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329 (464)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 329 (464)
++. ...+|...|++.....+ .+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|
T Consensus 262 ~~e--A~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 262 SRE--AKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred chh--hHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 740 01148999999988643 35778899999999999999999999999987654 567788889999999999999
Q ss_pred HHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 330 ERMLREMLKVGLKPDD-ATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 330 ~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
...++++...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 338 ~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 338 SDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998864 443 33445677889999999999999999886
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=4.9e-22 Score=181.64 Aligned_cols=303 Identities=15% Similarity=0.112 Sum_probs=212.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS---VYVFNVLMHKLCKE 142 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 142 (464)
...+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+......++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334566677777888887777765 34556677777777777888888777777776432211 24566777777888
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 218 (464)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888877653 34566777777888888888888888887776542221 12345667777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHH
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (464)
.+.|+++.+.. +.+...+..+...+.+.|++ ++|.++++++...+......++..++.+|...|++++|...+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDY------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888877653 22455666777778877765 588888888876533322456777788888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHhCC
Q 047873 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK---NGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~ 375 (464)
+.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.+
T Consensus 273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 8887764 45555677788888888888888888887775 4777777777766654 457788888888888765
Q ss_pred CCcCHH
Q 047873 376 HLPAVE 381 (464)
Q Consensus 376 ~~~~~~ 381 (464)
+.|++.
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 555544
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.4e-22 Score=180.08 Aligned_cols=313 Identities=15% Similarity=0.144 Sum_probs=246.6
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC---cccHHHHHHHHHh
Q 047873 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT---AVSFNTLINGHCK 176 (464)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 176 (464)
....+...|++++|+..|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344567789999999999999987654 677889999999999999999999999887532111 2457788899999
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCccc
Q 047873 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND----VIFTTLIDGHCKNGRIDM 252 (464)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 252 (464)
.|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-- 196 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL-- 196 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH--
Confidence 999999999999998753 456778899999999999999999999999876533321 2344566667777765
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047873 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332 (464)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (464)
++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...
T Consensus 197 ----~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 197 ----DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred ----HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 69999999988753 2345677778888999999999999999988765433356678888899999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 047873 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK---HGQLKNANMLLDTMLDL 409 (464)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 409 (464)
++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9998876 366666788888999999999999999988875 5788888888877664 55888999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH
Q 047873 410 GVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 410 ~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
++.|++. .+|.+.|-.
T Consensus 348 ~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 348 QLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHhCCCC------EECCCCCCC
Confidence 7777766 335555543
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=4e-20 Score=177.05 Aligned_cols=334 Identities=10% Similarity=0.025 Sum_probs=272.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.-...++..+.+.|++++|+.+++.+.... +-+...+..++......|+++.|...++++.+..+. +...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 344556667889999999999999998886 445667777778888899999999999999998765 788889999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 219 (464)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998863 44567888899999999999999999998876532 233333333 4578899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH----HH
Q 047873 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES----AL 295 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~ 295 (464)
..++.+.+....++...+..+...+...|++ ++|...++++.... +.+...+..+...+...|++++ |.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~------~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKY------QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCH------HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 9999988764434455555566778877776 69999999998864 3356778889999999999986 89
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
..++.+.+..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+..++.+.|++++|...|+++...
T Consensus 271 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 271 EHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999987654 77889999999999999999999999999875 345667888899999999999999999999885
Q ss_pred CCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 376 HLPAV-ETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 376 ~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
.|+. ..+..+..++...|++++|...|+++.+.
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3443 33444577889999999999999998864
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=1.6e-19 Score=176.60 Aligned_cols=409 Identities=10% Similarity=-0.002 Sum_probs=307.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+.--.-.+.+..-.|+.++|++++.++.. ..+.+...+..+...+.+.|++++|+++|++..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~------------------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al 76 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRV------------------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKAL 76 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334455667789999999999999872 123334679999999999999999999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
+.. |.+...+..++..+...|++++|+..++++++..+. +.. +..+..++...|++++|...++++.+.. +.+...
T Consensus 77 ~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~ 152 (765)
T PRK10049 77 SLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQY 152 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 885 556777888889999999999999999999987654 666 8889999999999999999999999874 335566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHh-----cCCh---hHHHHHHHHHHHC-CCC
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV------YTYSALINGLCK-----ENRL---DDAELLLHEMCER-GLT 231 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~ 231 (464)
+..+..++...+..+.|+..++.... .|+. .....+++.... .+++ ++|++.++.+.+. ...
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 67788888889999999999987664 2221 112223333322 2234 7788889888864 222
Q ss_pred CCHH-HHH----HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 232 PNDV-IFT----TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 232 ~~~~-~~~----~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
|+.. .+. ..+..+...+++ ++|+..|+.+...+.+ |+. ....+..++...|++++|+..|+.+.+..
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~------~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRY------KDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhH------HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 2221 111 113344455554 6999999999887532 332 22335778999999999999999988764
Q ss_pred CCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCC-----------CCC---HhhHHHHHHHHHhcCChHHHHHHH
Q 047873 306 IEL---DNVAFTALISGFCRGGKVVEAERMLREMLKVGL-----------KPD---DATYTMVIDCFCKNGDTKTGFRLL 368 (464)
Q Consensus 306 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~~~~ 368 (464)
... .......+..++.+.|++++|..+++.+..... .|+ ...+..+...+...|+.++|++++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 321 134566677788999999999999999987531 122 234566778889999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
+++... .+.+...+..+...+...|++++|++.+++..+. .| +...+...+..+.+.|++++|.+++++ ....|+
T Consensus 383 ~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 383 RELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999886 3446788899999999999999999999999975 45 467777788889999999999999988 566676
Q ss_pred hhHH
Q 047873 447 YACY 450 (464)
Q Consensus 447 ~~~~ 450 (464)
....
T Consensus 460 ~~~~ 463 (765)
T PRK10049 460 DPGV 463 (765)
T ss_pred CHHH
Confidence 5443
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=2.6e-18 Score=165.02 Aligned_cols=411 Identities=12% Similarity=0.036 Sum_probs=261.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|..+.+-..-+-..++.|+++.|++.|++++ ...|+. .....++..+...|+.++|+.++
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL-------------------~~~P~~~~av~dll~l~~~~G~~~~A~~~~ 91 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEES-------------------KAGPLQSGQVDDWLQIAGWAGRDQEVIDVY 91 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHH-------------------hhCccchhhHHHHHHHHHHcCCcHHHHHHH
Confidence 3344455555566889999999999999998 456665 23337888888899999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
++..... +.+......+...+...|++++|+++|+++++..+. ++..+..++..+...++.++|++.++++... .|
T Consensus 92 eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp 167 (822)
T PRK14574 92 ERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DP 167 (822)
T ss_pred HHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc
Confidence 9988221 233444444566888899999999999999998776 6778888888999999999999999999877 45
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-----------------
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM----------------- 225 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------- 225 (464)
+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-
T Consensus 168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~ 246 (822)
T PRK14574 168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA 246 (822)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence 55555444444444666666999999998874 335666666777777666655555444432
Q ss_pred -------------------------------HHC-CCCCCH-HHH----HHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 226 -------------------------------CER-GLTPND-VIF----TTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 226 -------------------------------~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
... +..|.. ..| .-.+-++...++ +.++++.|+.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r------~~~vi~~y~~l~~ 320 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ------TADLIKEYEAMEA 320 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhhh
Confidence 111 000110 111 011222233332 3566666777666
Q ss_pred CCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCC--
Q 047873 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI-----ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL-- 341 (464)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 341 (464)
.+.+....+-..+..+|...+++++|..+++.+..... .++......|..++...+++++|..+++++.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 55443444566666777777777777777776655421 12233345666667777777777777777665210
Q ss_pred ---------CCC--H-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 342 ---------KPD--D-ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 342 ---------~~~--~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
.|+ - ..+..++..+...|+..+|++.++++... -+-|......+...+...|.+.+|.+.++.....
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 011 1 12334455566667777777777777654 2336666666677777777777777777555533
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 410 GVVP-DDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 410 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
.| +..+....+.++...|++++|.+++++ ....|+.
T Consensus 480 --~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 480 --APRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred --CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 33 455555666666667777777666655 3444543
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2e-18 Score=169.23 Aligned_cols=188 Identities=13% Similarity=-0.038 Sum_probs=114.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+......+...|++++|+..|++++ ...|++ .++..++..|...|++++|+..+++..+.
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al-------------------~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l 107 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIH-------------------QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR 107 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444556699999999999998 556666 88888888999999999999999988887
Q ss_pred CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--------HHhcCChhhHHHHHHHHhhCCC
Q 047873 89 YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK--------LCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+ |-+...+..+ ..+ +++++|..+++++.+..+. +..++..+... |.+. ++|.+.++ ......
T Consensus 108 d-P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~ 177 (987)
T PRK09782 108 H-PGDARLERSL-AAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAA 177 (987)
T ss_pred C-cccHHHHHHH-HHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCC
Confidence 5 3233333333 222 8888888888888876654 44444444443 3333 34444443 222211
Q ss_pred CCCcccHHHH-HHHHHhcCChhHHHHHHHHHhhCCC------------------------------CCCHHHHHHHHHHH
Q 047873 161 HATAVSFNTL-INGHCKAKNLDEGFRLKSVMEGSGM------------------------------RPDVYTYSALINGL 209 (464)
Q Consensus 161 ~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~ 209 (464)
.|+..+.... ...|.+.+++++|++++.++.+.+. +.+...+..+...|
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHH
Confidence 2233333333 6666666666666666666655431 12334444555556
Q ss_pred HhcCChhHHHHHHHHHH
Q 047873 210 CKENRLDDAELLLHEMC 226 (464)
Q Consensus 210 ~~~~~~~~a~~~~~~~~ 226 (464)
.+.|+.++|.++++++.
T Consensus 258 i~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 258 AYRGEKARLQHYLIENK 274 (987)
T ss_pred HHCCCHHHHHHHHHhCc
Confidence 66666666666666553
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.2e-18 Score=167.54 Aligned_cols=371 Identities=14% Similarity=0.000 Sum_probs=272.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
.|+...|..+..+|...|++++|++.+.+++ ...|+. .+|..+..+|...|++++|+..|
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al-------------------~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAAL-------------------ELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567789999999999999999999999999 566766 89999999999999999999988
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-----------------------------CCh---h
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-----------------------------PSV---Y 130 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------~~~---~ 130 (464)
..+...+ +.+......++..+.. ..+.......++..+. .+. .
T Consensus 218 ~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 218 TASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 7765543 1111111111111111 0111111111111100 000 1
Q ss_pred hHHHHHHH---HHhcCChhhHHHHHHHHhhCC-C-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 131 VFNVLMHK---LCKEGKIKDAQMVFDEFGKRG-L-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 131 ~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
.+..+... ....+++++|.+.|+.....+ . +.....+..+...+...|++++|...++...... +.....|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 11111111 123468899999999988764 1 2245568888888999999999999999998763 2346688889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047873 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (464)
..++...|++++|...|+++.+... .+...+..+...+...|++ ++|+..|++.....+ .+...+..+..++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~------~~A~~~~~kal~l~P-~~~~~~~~la~~~ 443 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEF------AQAGKDYQKSIDLDP-DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCc-cCHHHHHHHHHHH
Confidence 9999999999999999999988743 3678888888899988876 699999999988643 3567788889999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHhcC
Q 047873 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA------TYTMVIDCFCKNG 359 (464)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~ 359 (464)
.+.|++++|+..++..++..+. +...++.+...+...|++++|...|++........+.. .++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 9999999999999999987433 67889999999999999999999999998764221111 1122223344579
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
++++|.+++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999988863 234567889999999999999999999998864
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.7e-19 Score=174.10 Aligned_cols=387 Identities=13% Similarity=0.050 Sum_probs=292.2
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
-+.+..++..+..++...|++++|+++|++++ ...|++ ..+..++.++...|++++|+..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al-------------------~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKAL-------------------SLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35667779999999999999999999999998 444554 7788899999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
++++.... |.+.. +..+..++...|++++|+..++++++..+. +...+..+..++...+..+.|++.++.... .
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~ 179 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---T 179 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---C
Confidence 99999885 45566 888899999999999999999999998765 677777788888899999999999987654 1
Q ss_pred CCc------ccHHHHHHHHH-----hcCCh---hHHHHHHHHHhhC-CCCCCHH-HHH----HHHHHHHhcCChhHHHHH
Q 047873 162 ATA------VSFNTLINGHC-----KAKNL---DEGFRLKSVMEGS-GMRPDVY-TYS----ALINGLCKENRLDDAELL 221 (464)
Q Consensus 162 ~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~ 221 (464)
|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|++.
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 221 11222222222 12234 6788888888754 1223221 111 113445677999999999
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhCCChHHHHHH
Q 047873 222 LHEMCERGLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP---DKITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 222 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
|+.+.+.+.. |+. ....+...|...|++ ++|+..|+++....... .......+..++...|++++|..+
T Consensus 260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~------e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQP------EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHhhccCCCCCHH-HHHHHHHHHHhcCCc------HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999987532 322 222256678888877 69999999987653221 124456667788999999999999
Q ss_pred HHHHHHcCC-----------CCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH
Q 047873 298 RKEMIKRGI-----------ELD---NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363 (464)
Q Consensus 298 ~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 363 (464)
++.+....+ .|+ ...+..+...+...|+.++|+.+++++.... +.+...+..+...+...|++++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987642 123 2345667788899999999999999998874 5567888999999999999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047873 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425 (464)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (464)
|++.++++.... +.+...+...+..+...|++++|..+++++++. .|+......+-..+
T Consensus 412 A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 412 AENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999999999963 334667777788899999999999999999974 56665554444444
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.3e-18 Score=157.85 Aligned_cols=405 Identities=12% Similarity=0.089 Sum_probs=257.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+|.-++++|=..|++++|...|.... +..++. ..+..|+++|...|+.+.+...|+++.
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~-------------------k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESL-------------------KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH-------------------ccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 34444444444455555544444444 344444 334455666666666666666666666
Q ss_pred hCCCCCChhcHHHHHHHHHcCC----ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH----hhC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTN----LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF----GKR 158 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~ 158 (464)
... |.+..+...++..|...+ ..++|..++.+..+..+. |...|-.+..++...+-+.. +.+|... ...
T Consensus 370 k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 370 KQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESK 446 (1018)
T ss_pred HhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc
Confidence 553 334455555555555443 335555555555554433 56666666555554443333 4444332 233
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS---GMRPD------VYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+-.+.+...|.+...+...|++.+|...|...... ...++ ..+--.+.++.-..++.+.|.+.|..+.+..
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 33455566677777777777777777777665533 11122 1122234555555666777777777766652
Q ss_pred CCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CC
Q 047873 230 LTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG-IE 307 (464)
Q Consensus 230 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 307 (464)
|. ...|..+.......+ ...+|...+....... ..++..+..+...+.+...+..|.+-|..+.+.- ..
T Consensus 527 --p~YId~ylRl~~ma~~k~------~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 527 --PGYIDAYLRLGCMARDKN------NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred --chhHHHHHHhhHHHHhcc------CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 22 233333331111112 2357788887776643 3355566667778888888888888776666542 23
Q ss_pred CCHHHHHHHHHHHhc------------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 308 LDNVAFTALISGFCR------------GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
+|+.+...|.+.|.+ .+..++|+++|.++++.. +-|...-+.+.-+++..|++..|..+|.+.++..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 577777777776653 245788999999998876 4577888899999999999999999999999973
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLD-LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
. ....+|-.+.++|..+|++..|+++|+...+ ....-+..+...|.+++.+.|.+.+|.+.+.. +.+.|.
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 3 2556788999999999999999999988764 44455888999999999999999999888776 556665
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=6.8e-16 Score=148.62 Aligned_cols=377 Identities=11% Similarity=0.039 Sum_probs=282.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
..-+....+.|+++.|+..|++..+.. |.+ ...+ .++..+...|+.++|+..+++..... .........+...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 334445678999999999999999886 223 2333 78888888999999999999998311 1123333444668889
Q ss_pred cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
.|++++|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999999999885 345677778889999999999999999999876 56666665555555556777679999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccc---------------------------------------cc---CHHHH
Q 047873 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDM---------------------------------------AG---DMKEA 259 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------------------~~---~~~~a 259 (464)
++++.+..+ -+...+..+..+..+.|-... .+ ..+.|
T Consensus 192 ~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 999998742 255566666666666555432 01 22345
Q ss_pred HHHHHHHHhC-CCCCCH-H----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047873 260 RKIVDEMCTN-GLNPDK-I----TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333 (464)
Q Consensus 260 ~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (464)
+.-++.+... +..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 5555555542 111321 1 122345577889999999999999999887666789999999999999999999999
Q ss_pred HHHHHCC-----CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CcC---HHHHHHHHHHHHhcC
Q 047873 334 REMLKVG-----LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH-----------LPA---VETYNALMNGLCKHG 394 (464)
Q Consensus 334 ~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g 394 (464)
+.+.... .+++......|..++...+++++|..+++.+.+... .|+ ...+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9997653 122344467899999999999999999999998411 122 223455677888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
++.+|++.++++... -+-|......+...+...|.+.+|.++++. ..+.|+.
T Consensus 431 dl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 431 DLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 999999999999875 355999999999999999999999999976 5667763
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=7.3e-15 Score=144.55 Aligned_cols=421 Identities=11% Similarity=0.006 Sum_probs=243.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhc--CCCChHHHHHHHHHh-----------cCCCCCh-hhHHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKK--GMGSSASLFASILET-----------RGTHLPG-LVLDALMIV 68 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~l~~~ 68 (464)
+..++..+..++..|.+.|+.++|.+.++++-.-. ...+...++...... ....++- .....++..
T Consensus 243 lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 243 IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPV 322 (987)
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHH
Confidence 34678889999999999999999999998864321 122222222211111 0011111 223344677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
+.+.+.++.+.++.. . .|.......-.......+...++...+..+.+..+. +......+.......|+.++|
T Consensus 323 ~~~~~~~~~~~~~~~----~--~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 323 LLKEGQYDAAQKLLA----T--LPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHhccHHHHHHHHhc----C--CCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHH
Confidence 778888876665532 1 222222111111222335566666666666654333 555555666666677777777
Q ss_pred HHHHHHHhhC-C-CCCCcccHHHHHHHHHhc-------------------------CChhHHHHHHHHHhhC-C-CCC--
Q 047873 149 QMVFDEFGKR-G-LHATAVSFNTLINGHCKA-------------------------KNLDEGFRLKSVMEGS-G-MRP-- 197 (464)
Q Consensus 149 ~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------------------~~~~~a~~~~~~~~~~-~-~~~-- 197 (464)
.++|+..... + ..++....+-++..|.+. |++.++...++..... + .++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 7777766542 1 111222223344444333 2333333333333322 1 123
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh
Q 047873 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277 (464)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 277 (464)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++ ++|...|+++... +|+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~------eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY------ATALAAWQKISLH--DMSNED 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH------HHHHHHHHHHhcc--CCCcHH
Confidence 45566666666665 6777777766666655 24433322333333455554 5777777776553 233344
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (464)
+..+..++.+.|++++|...++..++.++. ....+..+.....+.|++++|...+++..+. .|+...+..+..++.+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 555566677777777777777777766422 3333333334444557777777777777765 3566677777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 437 (464)
.|++++|...+++..... +.+...+..+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777752 2355666777777777777777777777777642 23566677777777777777777777
Q ss_pred HHh-cCCCCc
Q 047873 438 QSE-KGLVSD 446 (464)
Q Consensus 438 ~~~-~~~~p~ 446 (464)
+++ +.+.|+
T Consensus 700 l~~Al~l~P~ 709 (987)
T PRK09782 700 ARLVIDDIDN 709 (987)
T ss_pred HHHHHhcCCC
Confidence 776 556665
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2.3e-16 Score=134.09 Aligned_cols=248 Identities=15% Similarity=0.163 Sum_probs=176.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC-----------------ccc------------ccCHH
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH-CKNGR-----------------IDM------------AGDMK 257 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-----------------~~~------------~~~~~ 257 (464)
.+.+.|+++.|.+++.-+.+.+-.......+.|-..+ .+.|+ +.. .|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 3678899999999998887663332222222222221 11111 000 47788
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
+|...+++.......-....|+ +.-.+-..|++++|++.|-++...-. -+...+..+.+.|....+..+|++++-+..
T Consensus 508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 8888888887654332233333 33455677888888888876654321 266777778888888888888888887776
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047873 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417 (464)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 417 (464)
.. ++.|+.+++.|...|-+.|+-.+|.+.+-.--.- ++.+..+..-|...|....-+++++.+|++..- +.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 4667888889999999999988888876554443 556788888888888888888999999988753 6899999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHh--cCCCCchhHHHHhhccchhhh
Q 047873 418 YNILLEGHC-KHGNPEDFDKLQSE--KGLVSDYACYTSLVSKSSKYR 461 (464)
Q Consensus 418 ~~~l~~~~~-~~g~~~~a~~~~~~--~~~~p~~~~~~~ll~~~~~~~ 461 (464)
|..++..|. +.|+++.|..+++. ..+..|...+.-|++.|+..|
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 988887765 78999999999987 466778888888888888765
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.9e-14 Score=120.53 Aligned_cols=392 Identities=13% Similarity=0.168 Sum_probs=258.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh---------------------------------
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--------------------------------- 52 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 52 (464)
.+++=|.|+.. .-.|..+++--+|+.|.++ +..-+..+-.++++-
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 34444555553 3477888888888887543 333333333333321
Q ss_pred -------cC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 53 -------RG-THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 53 -------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.. .+.++.++..++.++++--+.++|.+++++...........+|+.+|.+-.-. ...++..+|....
T Consensus 193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK 268 (625)
T ss_pred ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh
Confidence 12 33344888888888888888888888888887776677788888887765332 3367788888888
Q ss_pred CCCChhhHHHHHHHHHhcCChhh----HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHhh----CCC
Q 047873 125 YSPSVYVFNVLMHKLCKEGKIKD----AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE-GFRLKSVMEG----SGM 195 (464)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~ 195 (464)
..||..|+|+++.+.++.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+ +..++..+.. ..+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 88888888888888888887765 45677778888888888888888888888777654 3344444432 122
Q ss_pred CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Q 047873 196 RP----DVYTYSALINGLCKENRLDDAELLLHEMCERG----LTPN---DVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264 (464)
Q Consensus 196 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 264 (464)
+| +...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+.... +.....|+
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~------~~~~~~Y~ 422 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI------DVTLKWYE 422 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 22 34455667777778888887777766554321 2222 23355566666766554 47788888
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-Ch---H----------HHH
Q 047873 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG-KV---V----------EAE 330 (464)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~----------~a~ 330 (464)
.|...-.-|+..+...++++..-.+.++-.-+++.++...|..........++..+++.. +. + -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 888777778888888888888888888888888888888776555555555555555433 11 0 111
Q ss_pred HHHH-------HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C---cCHHHHHHHHHHHHhcCCHHHH
Q 047873 331 RMLR-------EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH-L---PAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 331 ~~~~-------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~a 399 (464)
.+++ ++.+. .......+.++..+.+.|..++|.+++..+.+.+. . |.......+++.-.+.++...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111 22222 33455677777778888888888888888865522 2 3333344556666777788888
Q ss_pred HHHHHHHHhCCC
Q 047873 400 NMLLDTMLDLGV 411 (464)
Q Consensus 400 ~~~~~~~~~~~~ 411 (464)
..+++-|...+.
T Consensus 581 ~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 581 IEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHcCc
Confidence 888888876544
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.9e-15 Score=138.80 Aligned_cols=426 Identities=9% Similarity=-0.006 Sum_probs=315.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+.++.+.+.|.+.|.-.|++..+.++...++..+. .. ..-...+..+.++|...|++++|...|.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--------~~-------~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE--------NK-------SIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--------hh-------HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56888999999999999999999999999985320 11 1112678889999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChhhHHHHHHHHhhCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG----KIKDAQMVFDEFGKRG 159 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~ 159 (464)
...........-.+..++..+.+.|+.+.+...|+.+.+..+. +..+...|...|+..+ ..+.|..++.+..+..
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 8877652222445677889999999999999999999987654 6777777888887775 4566777777766653
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVME----GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER---GLTP 232 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 232 (464)
+.|...|..+...+....-+.. +.+|.... ..+..+.+...|.+...+...|++..|...|...... ...+
T Consensus 411 -~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 5577788888887765554444 77776544 3454578888999999999999999999999988755 1122
Q ss_pred CH------HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 233 ND------VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 233 ~~------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
+. .+-..+...+...++. +.|.+.|..+... .|+ ...|..++......+...+|...+..++..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~------~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDT------EVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhh------hHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 22 1222233344444444 6999999999885 344 3345555544445678889999999998875
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHh------------cCChHHHHHHHHHHH
Q 047873 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVG-LKPDDATYTMVIDCFCK------------NGDTKTGFRLLKEMR 372 (464)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~ 372 (464)
-. ++..++.+...+.....+.-|..-|..+.+.. ..+|..+...|...|.+ .+..++|+++|.++.
T Consensus 561 ~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 SS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred cC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 43 67788888888888888888888676665542 23566776677765543 345788999999998
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCchh
Q 047873 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE----KGLVSDYA 448 (464)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~p~~~ 448 (464)
+.. +.|...-|.+.-.++..|++.+|..+|.+..+.. ..+..+|.-+...|...|++-.|+++++. ..-.-+..
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 873 3477777888999999999999999999998763 34677888899999999999999999886 34344566
Q ss_pred HHHHhhccch
Q 047873 449 CYTSLVSKSS 458 (464)
Q Consensus 449 ~~~~ll~~~~ 458 (464)
+...|-++.-
T Consensus 718 vl~~Lara~y 727 (1018)
T KOG2002|consen 718 VLHYLARAWY 727 (1018)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=5.9e-15 Score=135.78 Aligned_cols=392 Identities=13% Similarity=0.073 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+...-...+.+..+|++++|.+++.+++. ..+....+|..|...|-+.|+.++++..+-.+.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44445556667778999999999999994 445555999999999999999999999987776
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
... |.+...|..+.....+.|++.+|.-.|.++++..+. +....-.-+..|-+.|+...|...|.++.....+.|..-
T Consensus 201 HL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 201 HLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred hcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 665 556788999999999999999999999999998765 666666677789999999999999999988742222222
Q ss_pred H----HHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047873 167 F----NTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241 (464)
Q Consensus 167 ~----~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 241 (464)
+ -..++.+...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+|...+.+--
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 2 23456667777778898888877652 223456678889999999999999999888887643344443331100
Q ss_pred HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 047873 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG--IELDNVAFTALISG 319 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 319 (464)
.++. ....++. ...+..++..+ ..++-++...+..+....+........ +.-+...|..+..+
T Consensus 359 -----~~~~-------~~~~~~~--~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 359 -----RRRE-------EPNALCE--VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA 423 (895)
T ss_pred -----hccc-------ccccccc--CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence 0000 0000000 01112223222 112223334444444444444444444 22344566666667
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
+...|++.+|+.++..+.....--+...|-.+..+|...|.++.|.+.|+.++... +.+...--+|...+.+.|+.++|
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHH
Confidence 77777777777777766665433345566666667777777777777777666641 12333444555566666777777
Q ss_pred HHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047873 400 NMLLDTML--------DLGVVPDDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 400 ~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a 434 (464)
.+.+..+. ..+..|+..........+...|+.++.
T Consensus 503 lEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 503 LETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 76666643 123344455555556666666766663
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=9.7e-16 Score=130.31 Aligned_cols=354 Identities=12% Similarity=0.083 Sum_probs=243.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC------------
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP------------ 127 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------ 127 (464)
.+++.+...+.+.|++++|+..|+.+.+.. |+-.+-..++-++..-|+.++..+.|.+++..-..+
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 667778888999999999999999988873 565554455556667788899999999987643222
Q ss_pred ChhhHHHHH-----HHHHhcCC--hhhHHHHHHHHhhCCCCCCccc---------------------HHHHHHHHHhcCC
Q 047873 128 SVYVFNVLM-----HKLCKEGK--IKDAQMVFDEFGKRGLHATAVS---------------------FNTLINGHCKAKN 179 (464)
Q Consensus 128 ~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~~~ 179 (464)
+....+..+ ...-+.+. .++++-.--++...-+.|+... --.-...+.++|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 222222222 11222211 1112111112211111222110 0112346778999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHH------------------------------------HHHHHhcCChhHHHHHHH
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSAL------------------------------------INGLCKENRLDDAELLLH 223 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------~~~~~~~~~~~~a~~~~~ 223 (464)
++.|.+++..+.+..-+.....-+.| .+.....|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99998888877654222111111111 111224588999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH---HHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHH
Q 047873 224 EMCERGLTPNDVIFTTLID---GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (464)
+.... |..+-..|.. .+...|+ +++|+..|-++... +..+..+...+...|-...++.+|++++.+
T Consensus 515 eal~n----dasc~ealfniglt~e~~~~------ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 515 EALNN----DASCTEALFNIGLTAEALGN------LDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHcC----chHHHHHHHHhcccHHHhcC------HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 98876 4333333322 2344444 57999999887553 234677778888999999999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 047873 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380 (464)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 380 (464)
.... ++-|+.+++.|...|-+.|+-.+|.+.+-.-.+- ++-+..+...|...|....-+++++..|++..- ++|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 7765 4558999999999999999999999887665443 466888999999999999999999999998876 67999
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047873 381 ETYNALMNGL-CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 381 ~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
.-|..++..| .+.|+++.|.++++...+. ++.|...+..|++.+...|--
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999888655 5689999999999998764 677999999999999887743
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2e-14 Score=121.52 Aligned_cols=306 Identities=16% Similarity=0.237 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC--hhhH-HHHHHHHHhc-------------
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL--PTVT-LGFYLEILDY------------- 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a-~~~~~~~~~~------------- 123 (464)
.+-+.|+.+ ...|...++--+|+.|.+.+++.+...-..+++.-+-.+. +.-+ .+.|-.|...
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 455666654 4578999999999999999988887776666554332221 1111 1122222111
Q ss_pred ------CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 047873 124 ------GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197 (464)
Q Consensus 124 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 197 (464)
-.+.+..++..+|..+++--..+.|.+++.+......+.+..+||.+|.+-.-. ...+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence 122367889999999999999999999999998877788899999998875533 3378999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC----
Q 047873 198 DVYTYSALINGLCKENRLDD----AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---- 269 (464)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---- 269 (464)
|..|+|+++.+..+.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.++.. ..+..++.++...
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~-----k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ-----KVASSWINDIQNSLTGK 346 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch-----hhhHHHHHHHHHhhccC
Confidence 99999999999999998764 5678888999999999999999999999888763 3455555555432
Q ss_pred CCC---C-CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 270 GLN---P-DKITYTILLDGFCKEGDLESALDIRKEMIKRG----IELD---NVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 270 ~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
..+ | +...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122 2 34456667777778888777777765443321 1122 22345555666666666777777777665
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 339 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
.-.-|+..+...++++..-.|.++-..++|..++..|
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 5555666666666666666666666666665555443
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.9e-13 Score=126.15 Aligned_cols=431 Identities=15% Similarity=0.109 Sum_probs=304.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|....+|..|+.+|-++|+.++++..+-.+. ...|.+ ..|..+.....+.|++++|+-+|
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-------------------HL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-------------------HLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHH-------------------hcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5678899999999999999999998776654 455555 99999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN----VLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..+.. |++-..+..-...|-+.|+..+|.+-|.++....++.|..-.. ..++.+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999986 5566666667778899999999999999999876543433333 3456677788889999998887663
Q ss_pred -CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC---------------------------CCCCHHHHHHHHHHHH
Q 047873 159 -GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG---------------------------MRPDVYTYSALINGLC 210 (464)
Q Consensus 159 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~ 210 (464)
+-..+...++.++..+.+...++.+......+.... +.++... ..++-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 223456778999999999999999998887776521 1122222 12333445
Q ss_pred hcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC
Q 047873 211 KENRLDDAELLLHEMCERGLT--PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (464)
+.+..+....+...+.+..+. -+...|.-+..++...|++ ..|+.+|..+.....--+...|-.+.++|...
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~------~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY------KEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH------HHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 555555555666666666533 3566788888999998887 59999999998875555677899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHhcCC
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK--------VGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
|.++.|.+.++.++...+. +...-..|...+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987543 556667778888999999999999988542 2234445555555666666776
Q ss_pred hHHHHHHHHHHHhCC-----C---------------------------------------------Cc-----------C
Q 047873 361 TKTGFRLLKEMRSDG-----H---------------------------------------------LP-----------A 379 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~-----~---------------------------------------------~~-----------~ 379 (464)
.++-..+-..|+... + .+ +
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 655444333222100 0 00 0
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHhc----CC--C
Q 047873 380 V----ETYNALMNGLCKHGQLKNANMLLDTMLDLGV-VPDDI----TYNILLEGHCKHGNPEDFDKLQSEK----GL--V 444 (464)
Q Consensus 380 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~----~~--~ 444 (464)
. ..+..++.++.+.+++++|..+...+.+... .-+.. .=...+.++...+++..|...++.+ +. .
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 0 1135567778899999999999988875321 11222 2344556677889999998888762 22 2
Q ss_pred C-chhHHHHhhccchhhhh
Q 047873 445 S-DYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 445 p-~~~~~~~ll~~~~~~~~ 462 (464)
| ....|+..++..++++|
T Consensus 702 ~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 2 24555555555555544
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=2.9e-12 Score=114.25 Aligned_cols=416 Identities=11% Similarity=0.041 Sum_probs=222.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH---hcCCCChHHHH----------------HHHHHh---cCCCCCh-
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS---KKGMGSSASLF----------------ASILET---RGTHLPG- 59 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~----------------~~~~~~---~~~~~~~- 59 (464)
+|.+...|-+-..+=-++|+.+...++..+.+. .+|..-.+.-. ..++.+ .|.+..+
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 455666666665555566666666666555432 22221111111 111111 1333222
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 60 -LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 60 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+|..-...|.+.+-++-|+.+|....+.. +.+...|......--..|..+....+++++...-+. ....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence 555555556666666666666666555543 334445555555444556666666666666554332 44455555555
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
+-..|+...|..++...-+.. +.+...|-..+.....+..++.|..+|.+.... .|+...|.--++.-.-.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 555566666666666555543 224555555556666666666666666655543 34555554444444455566666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHH
Q 047873 219 ELLLHEMCERGLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
++++++..+. -|+ ...|..+...+.+.++. +.|...|..-.+. .+-....|..+...--+.|++-+|..+
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i------e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENI------EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH------HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 6666655554 222 23344444445444433 3555554443332 122334455555555555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047873 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 377 (464)
++...-+++. +...|...+.+-.+.|+.+.|..++.++++.- +.+...|..-|....+.++-..+...+++. .
T Consensus 742 ldrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e 814 (913)
T KOG0495|consen 742 LDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----E 814 (913)
T ss_pred HHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHhc-----c
Confidence 6666555544 55566666666666666666666666655542 333444555555544444433333322222 2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
-|+...-.+...|....+++.|.+.|.+.++.+ +.+-.+|.-+...+.++|.-++-.+++.+
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355556666777777777888888888777643 22456676777777777776666666665
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=7e-14 Score=127.36 Aligned_cols=294 Identities=12% Similarity=0.018 Sum_probs=177.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
...|+++.|.+.+.+..+.. +-+...+..........|+++.|.+.+.+..+..+.+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45677777777777766553 21233344455666677777777777777766443322233344566777777777777
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHHHH
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS-ALINGL---CKENRLDDAELLLHEM 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 225 (464)
..++.+.+.. +.+..+...+...+...|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777664 335566777777777777777777777777776533 222221 111111 2222223333344444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhCCChHHHHHHHHHH
Q 047873 226 CERGL---TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY-TILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 226 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
.+... +.+...+..+...+...|+. ++|.+.+++..+..+......+ ..........++.+.+.+.++..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~------~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDH------DSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCCh------HHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 43311 12566677777777777765 4777777777775332221111 11111223346677777777777
Q ss_pred HHcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 302 IKRGIELDN--VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 302 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
.+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 326 lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 766432 44 556677777788888888888888533333357777777888888888888888888877644
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.3e-13 Score=125.56 Aligned_cols=292 Identities=10% Similarity=-0.006 Sum_probs=214.9
Q ss_pred HcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc--cHHHHHHHHHhcCChhH
Q 047873 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV--SFNTLINGHCKAKNLDE 182 (464)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 182 (464)
...|+++.|.+.+.+..+..+. ....+-....++...|+++.|.+.+.+..+. .|+.. ..-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 4679999999999988876533 2344455677788899999999999998765 34543 33445888889999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCcccccCHHH
Q 047873 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT-TLIDGH---CKNGRIDMAGDMKE 258 (464)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~~~~~~~ 258 (464)
|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+.. +.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~------~~ 243 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA------DE 243 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH------hc
Confidence 999999999875 446778889999999999999999999999998654 333331 111111 222222 12
Q ss_pred HHHHHHHHHhCCC---CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCChHHHHHHHH
Q 047873 259 ARKIVDEMCTNGL---NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA-FTALISGFCRGGKVVEAERMLR 334 (464)
Q Consensus 259 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 334 (464)
....+..+....+ +.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 3334444433322 23778888899999999999999999999999754422111 1122222344578889999998
Q ss_pred HHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 335 EMLKVGLKPDD--ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 335 ~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
...+.. +-|. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 ~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888763 3344 567789999999999999999999644443568998899999999999999999999998753
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.4e-13 Score=124.62 Aligned_cols=283 Identities=10% Similarity=0.035 Sum_probs=163.8
Q ss_pred CCChhhHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHH--HHHHHHHhcCChhHH
Q 047873 107 TNLPTVTLGFYLEILDYGYSPSVYV-FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN--TLINGHCKAKNLDEG 183 (464)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 183 (464)
.|+++.|.+......+... ++.. +.....+....|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555444333221 1222 222233335555666666666555543 33332222 223455555666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCcccccCH
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND-------VIFTTLIDGHCKNGRIDMAGDM 256 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~ 256 (464)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+ .
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~------~ 245 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG------S 245 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC------H
Confidence 66666655543 224445555556666666666666666666555433211 122222222222211 1
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (464)
+...++++.+... .+.+......+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 3444444444332 2345667777788888888888888888888774 3344222 233334557888888888887
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 337 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7664 445666778888888888888888888888874 57888878888888888888888888887654
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=7e-17 Score=139.81 Aligned_cols=262 Identities=16% Similarity=0.109 Sum_probs=100.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHY-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|...|+++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778888999999999996554443 2334555666667777788999999999998877655 66677777776 688
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
+++++|.++++..-++ .++...+...+..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999998888776555 3466677778888888899999988888876532 345677788888888889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 047873 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
+++..+..+. +......++..+...|+. +++..+++...... +.+...+..+..++...|+.++|...+++.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~------~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDY------DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHH------HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 9988887422 566777788888877765 46667776665542 334556777888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
.+..+. |+.....+..++.+.|+.++|..+.+++.+
T Consensus 241 ~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT--HHHHHHHHHHHT-----------------
T ss_pred cccccc-cccccccccccccccccccccccccccccc
Confidence 876543 777888888888888888888888777654
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.1e-12 Score=109.58 Aligned_cols=382 Identities=11% Similarity=0.044 Sum_probs=267.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh--
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV-- 131 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 131 (464)
+...|...+-.....+.+.|..+.|+..|-.....- |..=.+|..|.... .-+++.......++ .|...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li-------t~~e~~~~l~~~l~-~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI-------TDIEILSILVVGLP-SDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh-------chHHHHHHHHhcCc-ccchHHH
Confidence 445555666666667788888999999988876653 32333444444332 12222222222222 12111
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM--RPDVYTYSALINGL 209 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 209 (464)
--.+..++.+..+.+++.+-.+.....|++-+...-+....+.....+++.|+.+|+++.+... -.|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234556777778888888888888888765655556666667788899999999999987631 12566777666443
Q ss_pred HhcCChhHHHHHHHHHH-H-CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047873 210 CKENRLDDAELLLHEMC-E-RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 210 ~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (464)
-.... +..+.+-. + ... -+.|...+.+-|.-.++. ++|..+|++..+.++. ....|+.+..-|..
T Consensus 310 ~~~sk----Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eH------EKAv~YFkRALkLNp~-~~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEH------EKAVMYFKRALKLNPK-YLSAWTLMGHEYVE 376 (559)
T ss_pred hhhHH----HHHHHHHHHHhccC--CccceeeehhHHHHHHhH------HHHHHHHHHHHhcCcc-hhHHHHHhhHHHHH
Confidence 22222 22222111 1 112 234445555555555444 7999999999986532 46789999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
.++...|++.++..++-++. |-..|-.+.++|.-.+.+.=|+-.|+++.+.. +.|...|..|..+|.+.++.++|++.
T Consensus 377 mKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred hcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999998765 88999999999999999999999999998875 56889999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHh-
Q 047873 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD----LGVV-P-DDITYNILLEGHCKHGNPEDFDKLQSE- 440 (464)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~- 440 (464)
|.+....+-. +...+..+...|-+.++.++|...+++.++ .|.. | ......-|..-+.+.+++++|..+...
T Consensus 455 ykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 455 YKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999987533 668899999999999999999999988764 2322 2 222333355667799999999887665
Q ss_pred cCCCCchhHHHHhhccchhh
Q 047873 441 KGLVSDYACYTSLVSKSSKY 460 (464)
Q Consensus 441 ~~~~p~~~~~~~ll~~~~~~ 460 (464)
....+..+--.+|++.+.+.
T Consensus 534 ~~~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 534 LKGETECEEAKALLREIRKI 553 (559)
T ss_pred hcCCchHHHHHHHHHHHHHh
Confidence 33388888888888777654
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.8e-12 Score=109.80 Aligned_cols=379 Identities=11% Similarity=0.014 Sum_probs=263.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+..-+...+..+-+.|....|++.|...+. .-|-. .+|..|..... +.+ ...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-------------------~~P~~W~AWleL~~lit---~~e----~~~ 215 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-------------------RYPWFWSAWLELSELIT---DIE----ILS 215 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHh-------------------cCCcchHHHHHHHHhhc---hHH----HHH
Confidence 4555667777888889999999999888873 23333 66666555442 222 222
Q ss_pred HHHhCCCCCChhcH--HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-
Q 047873 84 LLRKHYFRIPARGC--RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL- 160 (464)
Q Consensus 84 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 160 (464)
.+.. +.+.+...+ ..+..++....+.+++.+-.+.....|.+-+...-+....+.-...++++|+.+|+++.+.+.
T Consensus 216 ~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY 294 (559)
T KOG1155|consen 216 ILVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY 294 (559)
T ss_pred HHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 2222 222222222 223455666678888888888888888876677767777777888999999999999988731
Q ss_pred -CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047873 161 -HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239 (464)
Q Consensus 161 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (464)
--|..+|+.++-. ++.+-.-+.-......-. +--+.|+..+.+-|.-.++.++|...|+...+.+.. ....|+.
T Consensus 295 Rl~dmdlySN~LYv--~~~~skLs~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTL 369 (559)
T KOG1155|consen 295 RLDDMDLYSNVLYV--KNDKSKLSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTL 369 (559)
T ss_pred cchhHHHHhHHHHH--HhhhHHHHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHH
Confidence 0145566655533 333222111111111111 234557888889999999999999999999988643 5677888
Q ss_pred HHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047873 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319 (464)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (464)
+..-|....+. ..|+.-+++.++-. +.|...|-.+.++|.-.+.+.=|+-.|++...-.+. |...|.+|..+
T Consensus 370 mGHEyvEmKNt------~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~C 441 (559)
T KOG1155|consen 370 MGHEYVEMKNT------HAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGEC 441 (559)
T ss_pred hhHHHHHhccc------HHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHH
Confidence 88889888776 59999999998864 347888999999999999999999999999887544 88999999999
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-c-CHHHHHHHHHHHHhc
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHL-P-AVETYNALMNGLCKH 393 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~ 393 (464)
|.+.++.++|...|++....| ..+...+..|...|-+.++.++|...|.+.++. |.. | ....-.-|..-+.+.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 999999999999999999876 346688999999999999999999999887763 222 2 122222355667788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 394 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
+++++|..+....... .+...--..|++-+.
T Consensus 521 ~~~~~As~Ya~~~~~~--~~e~eeak~LlReir 551 (559)
T KOG1155|consen 521 KDFDEASYYATLVLKG--ETECEEAKALLREIR 551 (559)
T ss_pred cchHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 8888888776665532 334444444444433
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.8e-13 Score=113.55 Aligned_cols=394 Identities=11% Similarity=-0.000 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..+...++-|.++|++++|++.|..++ ...|+ ..-|.....+|...|+|++.++--.+.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI-------------------~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAI-------------------ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHH-------------------hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 345677888999999999999999999 67888 4888899999999999999999888887
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh-CC--CCC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-RG--LHA 162 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~ 162 (464)
+.+ |--..++..-..++-..|++++|+.=..-..- .|.. +..+--.+=+.+-+ .|.....+-.+ .+ +-|
T Consensus 177 El~-P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lP 249 (606)
T KOG0547|consen 177 ELN-PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLP 249 (606)
T ss_pred hcC-cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCC
Confidence 775 22245566666777778888877542222111 1111 21111111111111 11111111111 11 112
Q ss_pred CcccHHHHHHHHHh-------------------------cC---ChhHHHHHHHHHhhC---CCCCC---------HHHH
Q 047873 163 TAVSFNTLINGHCK-------------------------AK---NLDEGFRLKSVMEGS---GMRPD---------VYTY 202 (464)
Q Consensus 163 ~~~~~~~l~~~~~~-------------------------~~---~~~~a~~~~~~~~~~---~~~~~---------~~~~ 202 (464)
+.....+....+.. .+ .+..|.+.+.+-... ....+ ..+.
T Consensus 250 S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 250 SATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred cHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 22211111111110 00 122222222211100 00111 1222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 047873 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (464)
......+.-.|+.-.|..-|+..++....++ ..|-.+..+|.+..+. ++..+.|......++. ++.+|..=.
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~------~~~~~~F~~A~~ldp~-n~dvYyHRg 401 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQS------EKMWKDFNKAEDLDPE-NPDVYYHRG 401 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhcc------HHHHHHHHHHHhcCCC-CCchhHhHH
Confidence 2222334456777778888888777643322 2265666667766654 5777777777765432 344555555
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 047873 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362 (464)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 362 (464)
....-.++++.|..-|++....++. +...|..+.-+..+.++++++...|++..+. ++..+..|+.....+..+++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHH
Confidence 5666667788888888877776543 4555666666666777888888888887765 3555677888888888888888
Q ss_pred HHHHHHHHHHhCCCC-------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047873 363 TGFRLLKEMRSDGHL-------PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 434 (464)
.|.+.|+..++.... +.+...-.++..-. .+++..|.+++++..+. .| ....+..|...-.+.|+.++|
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHH
Confidence 888888877764211 11112222222222 37778888888887764 33 455677777777788888888
Q ss_pred HHHHHh
Q 047873 435 DKLQSE 440 (464)
Q Consensus 435 ~~~~~~ 440 (464)
++++++
T Consensus 557 ielFEk 562 (606)
T KOG0547|consen 557 IELFEK 562 (606)
T ss_pred HHHHHH
Confidence 888776
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=6.1e-12 Score=112.29 Aligned_cols=362 Identities=9% Similarity=0.008 Sum_probs=297.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
.+|..-.+.|.+++-++-|..+|..++ +.-|.. .+|...+..--..|..+.-..+|++..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~al-------------------qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHAL-------------------QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHH-------------------hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356666677777777777777777777 344444 999999998889999999999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
..- |-....|.......-..|+...|..++..+.+..+. +...|...+....+..+++.|..+|.+.... .|+..+
T Consensus 578 ~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv 653 (913)
T KOG0495|consen 578 EQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERV 653 (913)
T ss_pred HhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchh
Confidence 874 334555666677778889999999999999998766 8889999999999999999999999998775 678888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (464)
|-.-+....-.++.++|.+++++..+. -|+ ...|..+.+.+-..++++.|.+.|..-.+. ++-.+..|-.+...-.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 888888878889999999999998876 344 567888889999999999999999876654 3446677777777666
Q ss_pred hcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 047873 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325 (464)
Q Consensus 246 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (464)
+.|.. ..|..++++....++ .+...|...|++-.+.|+.+.|..+..+.++..+ .+...|..-|....+.++
T Consensus 731 k~~~~------~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 731 KDGQL------VRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred Hhcch------hhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHhccCccc
Confidence 66654 699999999988754 4778899999999999999999999999998743 367788888888888887
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047873 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405 (464)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 405 (464)
--...+.+++- ..|+++...+...|.....+++|.+.|.+..+.+. ....+|.-+...+.++|.-+.-.+++.+
T Consensus 803 kTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666655543 46888999999999999999999999999999742 3567888899999999999999999999
Q ss_pred HHhC
Q 047873 406 MLDL 409 (464)
Q Consensus 406 ~~~~ 409 (464)
....
T Consensus 877 c~~~ 880 (913)
T KOG0495|consen 877 CETA 880 (913)
T ss_pred Hhcc
Confidence 8864
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=2.8e-13 Score=122.73 Aligned_cols=287 Identities=10% Similarity=0.038 Sum_probs=202.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
.|+++.|.+.+....... +.+...+........+.|+++.|.+.+.++.+..+.+...........+...|+++.|.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 688888888887765542 1122223333445578888888888888887754332222222346678888888888888
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV-------YTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 88887775 446677788888888888888888888888876543222 2334445544455556666777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
+.+. .+.++.....+...+...|+. ++|.+++++..+. +|+.... ++.+....++.+++.+..+...+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~------~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDH------DTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 6543 234677777788888887776 5888888888774 3444222 233334558888888888888877
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
.+. |+..+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++....
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 554 6777888888889999999999999988875 588888888888999999999999888887653
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2.9e-16 Score=135.99 Aligned_cols=258 Identities=16% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
...+...|++++|+++++...... .+.+...|..+...+...++++.|...++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553322221 1122333333334444445555555555555443311 33334444443 34455
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhCCChHH
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
+++|.+++....+. .+++..+...+..+...+++ +++..+++.+.... .+.+...|..+...+.+.|+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY------DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------H-HHHTT-H------HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHH------HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55555544443332 12333333444444444333 34444444433221 12334444445555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
|+..+++.++..+. +......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|+..|++..+
T Consensus 165 A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 55555555554322 34444455555555555555555554444432 22333444455555555555555555555544
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047873 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 406 (464)
. .+.|+.....+..++...|+.++|.++.+++
T Consensus 243 ~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 243 L-NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp H-STT-HHHHHHHHHHHT---------------
T ss_pred c-ccccccccccccccccccccccccccccccc
Confidence 3 1224444445555555555555555554443
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.5e-11 Score=105.79 Aligned_cols=382 Identities=9% Similarity=0.031 Sum_probs=225.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
..+...|...+.+=.++..+..|..+|++....-+. -...|...+..=-..|+..-|.++|++-.+ ..|+...|.+.
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 344467777777777777777777777776665322 223344444444456777777777777665 34677777777
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GM-RPDVYTYSALINGLCKEN 213 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~ 213 (464)
+..-.+.+.++.|..+|+...-. .|+..+|......-.+.|+...+.++|+...+. |- ..+...+.+....=.++.
T Consensus 181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776554 567777777777767777777777777766543 10 111222233332223344
Q ss_pred ChhHHHHHHHHHHHCCC-------------------------------------------CCCHHHHHHHHHHHHhcCCc
Q 047873 214 RLDDAELLLHEMCERGL-------------------------------------------TPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 214 ~~~~a~~~~~~~~~~~~-------------------------------------------~~~~~~~~~l~~~~~~~~~~ 250 (464)
.++.|.-+|.-.++.-+ +.|-.+|--.+..-...|+
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~- 337 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD- 337 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC-
Confidence 45555555554443310 1123333333333333333
Q ss_pred ccccCHHHHHHHHHHHHhCCCCCCH--HhHHHHH-----HH---HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 047873 251 DMAGDMKEARKIVDEMCTNGLNPDK--ITYTILL-----DG---FCKEGDLESALDIRKEMIKRGIELDNVAFTALI--- 317 (464)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~-----~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 317 (464)
.+...++|++.+.. ++|-. ..|...| -+ -....+.+.+.++++..++. ++....||..+-
T Consensus 338 -----~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmy 410 (677)
T KOG1915|consen 338 -----KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMY 410 (677)
T ss_pred -----HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHH
Confidence 35667777776664 33311 1111111 11 12456677777777777663 333444444433
Q ss_pred -HHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 047873 318 -SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396 (464)
Q Consensus 318 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (464)
....++.++..|.+++..+.- ..|-..+|...+..-.+.++++.+..+|++.++.+. -+..+|......=...|+.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhH
Confidence 333456777777777776553 457777777777777788888888888888887632 2566777777777778888
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHh
Q 047873 397 KNANMLLDTMLDLG-VVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSL 453 (464)
Q Consensus 397 ~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~l 453 (464)
+.|..+|+-+++.. +.-....|...|.--...|.++.|..+++. +...+-..+|-+.
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 88888888877532 222344566666666677888888888776 4444544455443
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.1e-12 Score=107.07 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=123.9
Q ss_pred CChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhcCChh
Q 047873 73 GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV------YVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 73 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 146 (464)
++.++|++.|-+|.+.+ +.+.++..+++..+.+.|..++|+.+.+.+.+. ||. .+...|.+-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44555555555555443 223444445555555555555555555554432 121 12223334444455555
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHH
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV----YTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
.|+.+|..+...+ ..-......|+..|-...+|++|++.-+++.+.+-.+.. ..|..+...+....+++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d------ 197 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD------ 197 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH------
Confidence 5555555544432 112333444445555555555555554444443322211 12233333333344444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (464)
.|...+++..+.+.. .+..-..+.+.....|++..|.+.++.+.
T Consensus 198 -----------------------------------~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 198 -----------------------------------RARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred -----------------------------------HHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 445555554443211 22222334444555555555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH
Q 047873 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382 (464)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (464)
+.++..-+.+...|..+|.+.|+.++...++.++.+.. +....-..+...-......+.|...+.+-... .|+...
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~g 317 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRG 317 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHH
Confidence 55444334445555555555555555555555555442 22222222222222233333343333333322 255555
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHH
Q 047873 383 YNALMNGLCK---HGQLKNANMLLDTML 407 (464)
Q Consensus 383 ~~~l~~~~~~---~g~~~~a~~~~~~~~ 407 (464)
+..++..-.. .|+..+-..++++|+
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHH
Confidence 5555544332 233444444455554
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=7.6e-14 Score=124.64 Aligned_cols=281 Identities=12% Similarity=0.034 Sum_probs=181.1
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY--SPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
+..+|+..|+++.... .-+......++.+|...+++++|..+|+.+.+..+ ..+..+|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5667777777744442 33334555667777777777777777777665431 12556666666544322 11111
Q ss_pred H-HHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 152 F-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 152 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
+ +.+.... +..+.+|..+..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 1 2222221 3356777777777777777777777777777653 225677777777777777777788777777654
Q ss_pred CCCHHHHH---HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 231 TPNDVIFT---TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 231 ~~~~~~~~---~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
|+..|+ .+.-.|.+.+++ +.|+-.|+++.+.++. +.+....+...+-+.|+.++|+++++++...+.+
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~------e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKL------EFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred --CchhhHHHHhhhhheeccchh------hHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 444444 345566666665 5777777777765432 4556666677777778888888888877776655
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
|+..--..+..+...+++++|+..++++++.- +-+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 556 -n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 556 -NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred -CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555555666667777888888888777652 334556777777788888888887777777665
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1e-12 Score=107.30 Aligned_cols=287 Identities=15% Similarity=0.152 Sum_probs=208.8
Q ss_pred cCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCc------ccHHHHHHHHHhcCC
Q 047873 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA------VSFNTLINGHCKAKN 179 (464)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 179 (464)
-++++++|+++|-+|.+..+. +..+..+|...|.+.|..+.|+++...+..+ ||. .....|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 457899999999999986544 6666778899999999999999999998765 332 223455666777888
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHH
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a 259 (464)
++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+.. .++.-|.
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~~eIA----------------- 180 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYRVEIA----------------- 180 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cchhHHH-----------------
Confidence 888888888887654 224456677888888888888888888877776322 2222111
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
..|..+...+....+.+.|..++.+..+.+.+ ....-..+.......|+++.|.+.|+.+.+.
T Consensus 181 ----------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 181 ----------------QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred ----------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 12344555556667889999999999988655 5566667788899999999999999999998
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047873 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419 (464)
Q Consensus 340 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 419 (464)
+..--..+...|..+|.+.|+.++....+.++.+.. +....-..+........-.+.|...+.+-+.. +|+...+.
T Consensus 244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~ 319 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFH 319 (389)
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHH
Confidence 644445678889999999999999999999999863 34444444555445555667777776665543 79999999
Q ss_pred HHHHHHHhc---CCHHHHHHHHH
Q 047873 420 ILLEGHCKH---GNPEDFDKLQS 439 (464)
Q Consensus 420 ~l~~~~~~~---g~~~~a~~~~~ 439 (464)
.++...... |...+-.-+++
T Consensus 320 rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 320 RLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHhhhccccccchhhhHHHHH
Confidence 999887633 33455444444
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=5e-11 Score=102.64 Aligned_cols=353 Identities=12% Similarity=0.069 Sum_probs=236.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..|...+.+=-..|+...|.++|++.... .|+..+|.+.+..=.+-+..+.|..+|++..- +.|++..|-.....-
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE 217 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHH
Confidence 67777776667777888888888777665 57777787777777777777788888777664 336777777777777
Q ss_pred HhcCChhhHHHHHHHHhhC-CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC------------------------
Q 047873 140 CKEGKIKDAQMVFDEFGKR-GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS------------------------ 193 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 193 (464)
.+.|++..|..+|+..... |- .-+...+.+....-.++..++.|.-+|+-.++.
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence 7777777777777665443 10 001122333332222333333333333222111
Q ss_pred C-------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH---HHhcCC
Q 047873 194 G-------------------MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--DVIFTTLIDG---HCKNGR 249 (464)
Q Consensus 194 ~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~---~~~~~~ 249 (464)
| -+-|-.+|--.++.--..|+.+...++|+..... ++|- ...|...|-. |+--..
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 0 1234556666677777789999999999999875 3332 1122222211 111000
Q ss_pred cccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH----HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 047873 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG----FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325 (464)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (464)
.+ +.+++.+.++++..++. ++-...||..+--. -.+..++..|.+++...+.. -|..-+|...|..-.+.++
T Consensus 377 le-~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 377 LE-AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLRE 452 (677)
T ss_pred HH-hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhh
Confidence 11 34567899999998884 33345566554333 34678899999999887754 5677899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG-HLPAVETYNALMNGLCKHGQLKNANMLLD 404 (464)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 404 (464)
++.+..++++.++.+ +-+-.+|......-...|+.+.|..+|.-+++.. .......|.+.|..=...|.++.|..+++
T Consensus 453 fDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 999999999999986 4567788888888888999999999999999862 22234456777777778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH
Q 047873 405 TMLDLGVVPDDITYNILLEG 424 (464)
Q Consensus 405 ~~~~~~~~p~~~~~~~l~~~ 424 (464)
++++. .+...+|-++..-
T Consensus 532 rlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 532 RLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred HHHHh--cccchHHHhHHHH
Confidence 99875 3444566655543
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=4.9e-12 Score=106.54 Aligned_cols=292 Identities=12% Similarity=0.052 Sum_probs=204.0
Q ss_pred CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 047873 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186 (464)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 186 (464)
.|++.+|.....+..+.+.. ....|..-..+.-..|+.+.+-.++.+..+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57788887777776666544 44455566667777788888888877776653244555566666777777888888877
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCcccccCHHHH
Q 047873 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN-------DVIFTTLIDGHCKNGRIDMAGDMKEA 259 (464)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a 259 (464)
++.+.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+ ..+|..++.-....+.. +.-
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~------~gL 248 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS------EGL 248 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc------hHH
Confidence 77777665 34566677777888888888888888888877765433 23466666665554433 233
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
...+++.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|. .. ..-.+.+-++.+.-++..++..+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh
Confidence 3344443322 344566677777888888999999999988888876544 22 222456677777777777766654
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047873 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414 (464)
Q Consensus 340 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 414 (464)
. +.++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.++.++....-..|+
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3 44567788888899999999999999987777 468888999999999999999999988888764333343
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.5e-13 Score=121.47 Aligned_cols=284 Identities=11% Similarity=0.019 Sum_probs=153.8
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCCCcccHHHHHHHHHhcCChhHHHHH
Q 047873 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--LHATAVSFNTLINGHCKAKNLDEGFRL 186 (464)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 186 (464)
+..+|+..|.++...-. -..++...+.++|.+.+++++|.++|+.+.+.. -..+..+|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 44566666666333222 244555666667777777777777777665541 01134445544433211 111111
Q ss_pred H-HHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHH
Q 047873 187 K-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265 (464)
Q Consensus 187 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 265 (464)
+ +.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+ +.|...|+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~------d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEF------DKAMKSFRK 480 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHH------HhHHHHHHh
Confidence 1 2222221 334566777777777777777777777766655211 445555555545444433 466666666
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 047873 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
.+....+ +...|--+...|.+.++++.|+-.|+.+.+.++. +......+...+.+.|+.++|+.+++++...+. -|+
T Consensus 481 Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~ 557 (638)
T KOG1126|consen 481 ALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNP 557 (638)
T ss_pred hhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCc
Confidence 6543111 2233444555666666666666666666665544 455555666666666666666666666665542 233
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
..--..+..+...+++++|+..++++.+. .+.+...+-.+...|.+.|+.+.|+.-|--+.+.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33333445555566666666666666664 2223445555666666666666666666555543
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=7.3e-12 Score=105.53 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 047873 73 GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152 (464)
Q Consensus 73 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (464)
|+|.+|.+...+-.+.+ +-+.-.|.....+.-..|+.+++-.++.++.+.-..++....-+..+.....|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433333 11222333333444444444444444444444322233333344444444444444444444
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047873 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 194 (464)
+++.+.+ +.+..+.....++|.+.|++.....++..+.+.+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 4444432 2233444444444444444444444444444444
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.4e-11 Score=105.87 Aligned_cols=390 Identities=12% Similarity=0.024 Sum_probs=275.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-------------CCCC-----------hhcHHHHHHHHHcCCChhhH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHY-------------FRIP-----------ARGCRCLIDRMMRTNLPTVT 113 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~-----------~~~~~~l~~~~~~~~~~~~a 113 (464)
+.......+..+.+..+|++|+.++....... ..++ ...+..-...|...+++++|
T Consensus 81 d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 81 DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHH
Confidence 34566667778888999999999987221000 0001 11122223445566788888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcC------------------ChhhHHHHHHHHhhC----------------C
Q 047873 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEG------------------KIKDAQMVFDEFGKR----------------G 159 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~a~~~~~~~~~~----------------~ 159 (464)
...|.+.+...+. ....+..++....-.. +.+.-..+|+..... +
T Consensus 161 r~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 161 RDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIG 239 (611)
T ss_pred HHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhh
Confidence 8888887764433 3333333333222111 111112222211000 1
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (464)
...+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +..+.+|-.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 12233344445556677889999999999988764 5566667777778899999888888888888763 446888998
Q ss_pred HHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047873 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319 (464)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (464)
+.--|...+++ .+|.++|.+....+.. =...|-.....|.-.+..++|+..+...-+.-.. ...-+--+..-
T Consensus 318 Vg~YYl~i~k~------seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgme 389 (611)
T KOG1173|consen 318 VGCYYLMIGKY------SEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGME 389 (611)
T ss_pred HHHHHHHhcCc------HHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHH
Confidence 88888888877 5999999998764322 2457888999999999999999998887765211 11122233446
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHhc
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD------GHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 393 (464)
|.+.++.+.|..+|.++.... +.|+..++-+.-.....+.+.+|..+|+..... .......+++.+..+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 788999999999999998764 567788888888888899999999999988732 1112456789999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccchhh
Q 047873 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKSSKY 460 (464)
Q Consensus 394 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~~~~ 460 (464)
+++++|+..+++.+... +.+..++.++.-.|...|+++.|...+.+ +.+.|+..+...+++.+...
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999753 45899999999999999999999999988 89999999999999877654
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=2.9e-12 Score=121.33 Aligned_cols=264 Identities=13% Similarity=0.003 Sum_probs=174.5
Q ss_pred CCHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh-------
Q 047873 5 LTLHAYSTMVHFLVA-----HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVD------- 71 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~------- 71 (464)
.+..+|...++.... .+.+++|+++|++++ ...|+. ..+..+..+|..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-------------------~ldP~~a~a~~~La~~~~~~~~~g~~ 314 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-------------------NMSPNSIAPYCALAECYLSMAQMGIF 314 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-------------------hcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 345555555554321 234578888888887 566766 677777665542
Q ss_pred --cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 72 --LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 72 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
.+++++|+..+++..+.+ |.+..++..+...+...|++++|...|+++++.++. +...+..+..++...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 315 DKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred ccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 244789999999998886 556778888888888899999999999999987755 6778888888899999999999
Q ss_pred HHHHHHhhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 150 MVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 150 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
..+++..+.+ |+ ...+..++..+...|++++|...++++.+...+-++..+..+..++...|++++|...+.++...
T Consensus 393 ~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 393 QTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999988773 33 23334445556678889999999888775532224455677778888899999999998887655
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 229 GLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 229 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
.|+ ....+.+...|...|+ .+...++.+.+.. -.+....+ .-..+.-.|+.+.+..+ +++.+.
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~--------~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNSE--------RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --cchhHHHHHHHHHHHhccHH--------HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 233 3334445555566552 5555555554321 11111122 23334444555555544 555544
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=2e-12 Score=109.49 Aligned_cols=203 Identities=9% Similarity=-0.044 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+.....+..++..+...|++++|++.+++++. ..|+. ..+..+...+...|++++|++.|
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 88 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALE-------------------HDPDDYLAYLALALYYQQLGELEKAEDSF 88 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567888889999999999999999999873 33444 78888889999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
++..... +.+...+..+...+...|++++|...++++.+.... .....+..+..++...|++++|.+.+++..... +
T Consensus 89 ~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 166 (234)
T TIGR02521 89 RRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-P 166 (234)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 9988875 445667788888889999999999999998874322 234566778888899999999999999887763 3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34567888888899999999999999988776 2445666777788888899999999888877653
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=9.5e-10 Score=97.51 Aligned_cols=396 Identities=13% Similarity=0.101 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
....+=++.+..+|++++|.+...+++ ++.|++ .++..-+.++.+.++|++|+.+.+.-.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil-------------------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKIL-------------------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHH-------------------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 344555677889999999999999998 444555 888888888999999999997665422
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-----
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL----- 160 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 160 (464)
... ....-+.--..+..+.+..++|+..++ |..+ +..+...-.+.+.+.+++++|..+|+.+.+.+.
T Consensus 74 ~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 74 ALL--VINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred hhh--hcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 110 011111112233447888899888887 2222 344666777788889999999999988854421
Q ss_pred ---------------------C-CCcccHHHHH---HHHHhcCChhHHHHHHHHHhhCC-------------CCCCHH-H
Q 047873 161 ---------------------H-ATAVSFNTLI---NGHCKAKNLDEGFRLKSVMEGSG-------------MRPDVY-T 201 (464)
Q Consensus 161 ---------------------~-~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~ 201 (464)
+ ....+|..+. ..++..|++.+|+++++...+.+ +.-... .
T Consensus 147 ~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 147 ERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 0 0122444443 34557899999999999883211 010111 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCcccccCHHHHHHHHHHHH----------
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVI----FTTLIDGHCKNGRIDMAGDMKEARKIVDEMC---------- 267 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~---------- 267 (464)
-..|..++...|+..+|.++|...++.... |... -|.++..-....-++ ..++..++...
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d-----~~~l~~k~~~~~~l~~~~l~~ 300 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFD-----GDLLKSKKSQVFKLAEFLLSK 300 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCc-----hHHHHHHHHHHHHhHHHHHHH
Confidence 234556677899999999999999887543 4322 222332222211121 01111111110
Q ss_pred ------------------------------hC--CCCCCHHhHHHHHHHHH--hCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 268 ------------------------------TN--GLNPDKITYTILLDGFC--KEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 268 ------------------------------~~--~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
.. +..|. ..+..++..+. +...+..+..++...-+....-...+.
T Consensus 301 Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 301 LSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 00 01111 22233333222 122355666666666655443334566
Q ss_pred HHHHHHHhccCChHHHHHHHH--------HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHH-
Q 047873 314 TALISGFCRGGKVVEAERMLR--------EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD--GHLPAVET- 382 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~- 382 (464)
-.++......|+++.|..++. .+.+.+. .+.+...++..+.+.++-+.|..++.+.++. ...+....
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 667777888999999999998 4444433 3456667777778888877788888777664 11222233
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 383 ---YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 383 ---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+..+...-.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-+.
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 3333444457799999999999999853 66888999999999876 78888888765
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=3.7e-09 Score=94.77 Aligned_cols=331 Identities=11% Similarity=0.084 Sum_probs=204.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 047873 29 LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108 (464)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 108 (464)
.++-+.........+.+|.+.+++..+.-...+|...+......|-++-++.++++..+.. +....-.+..+++.+
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhcc
Confidence 3344445556677788888888876666666888888888888888888888888877653 334666777888888
Q ss_pred ChhhHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC
Q 047873 109 LPTVTLGFYLEILDYG------YSPSVYVFNVLMHKLCKEGKI---KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179 (464)
Q Consensus 109 ~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (464)
+.++|.+.+..++... .+.+-..|..+-...++.-+. -....+++.+..+-...=...|.+|.+.|++.|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 8888888888765321 122445555555554444322 2344455555443111113468899999999999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHCCC-------
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN----------------------RLDDAELLLHEMCERGL------- 230 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~------- 230 (464)
+++|.++|++.++. ..+..-|..+.+.|+... +++-.+.-|+.+.....
T Consensus 264 ~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999887764 223334444444443221 12233344444433310
Q ss_pred ----CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC------CHHhHHHHHHHHHhCCChHHHHHHHHH
Q 047873 231 ----TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP------DKITYTILLDGFCKEGDLESALDIRKE 300 (464)
Q Consensus 231 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (464)
+.+...|..-+..+ .++..+....+.+.+.. +.| -...|..+...|-.+|+++.|..+|++
T Consensus 342 LRQn~~nV~eW~kRV~l~--------e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--------EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HhcCCccHHHHHhhhhhh--------cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11222222222222 23345666777777654 222 134578888999999999999999999
Q ss_pred HHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-----------------CHhhHHHHHHHHHhcCC
Q 047873 301 MIKRGIELD---NVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-----------------DDATYTMVIDCFCKNGD 360 (464)
Q Consensus 301 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~ll~~~~~~~~ 360 (464)
..+...+-- ..+|..-...-.++.+++.|+.+++++....-+| +...|+..++..-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 988754422 3566666777778889999999888876532111 12234444555555677
Q ss_pred hHHHHHHHHHHHhC
Q 047873 361 TKTGFRLLKEMRSD 374 (464)
Q Consensus 361 ~~~a~~~~~~~~~~ 374 (464)
++....+|+++++.
T Consensus 493 festk~vYdriidL 506 (835)
T KOG2047|consen 493 FESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777664
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.1e-10 Score=101.09 Aligned_cols=287 Identities=11% Similarity=0.016 Sum_probs=216.6
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
..++.....-..-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-+-+=..+.+.- +..+.+|-.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3456666666777888899999999999988774 5666777777778888898888887777777653 4467788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047873 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (464)
.-.|...|+.++|.+.|.+....+.. =...|-.....|+-.+.. ++|+..+...-+. ++-...-+--+..-|
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Eh------dQAmaaY~tAarl-~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEH------DQAMAAYFTAARL-MPGCHLPSLYLGMEY 390 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchH------HHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence 88888899999999999987765322 245677777777776665 4787777766553 111111123344456
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC----C--CCCCHhhHHHHHHHHHhcC
Q 047873 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV----G--LKPDDATYTMVIDCFCKNG 359 (464)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~ll~~~~~~~ 359 (464)
.+.++...|.+.|.+.....+. |+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 7789999999999998887544 7888888888888888999999999887732 0 0113456888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
.+++|+..+++.... .+.+..++.++.-.|...|+++.|.+.|.+.+- +.|+..+...++..+.
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 999999999999887 345888999999999999999999999999884 6788877777666544
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=5.8e-10 Score=96.59 Aligned_cols=368 Identities=11% Similarity=0.016 Sum_probs=235.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
...+-|.++|++++|++.|....... |+ +.-|.....+|...|++++..+...+.++.++. -+.++..-..++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhh
Confidence 45566888999999999999988874 55 555777888888999999999999999886644 466677777788888
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH-HHhhCC--CCCCHHHHHHHHHHHH---------
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS-VMEGSG--MRPDVYTYSALINGLC--------- 210 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~--~~~~~~~~~~l~~~~~--------- 210 (464)
|++++|+.=..-..-.+--.+..+--.+=+.+-+. |..-.+ .+.+.+ +-|+..........+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 88888765333222211111111111111111111 111111 111111 1233322222221111
Q ss_pred --------------h--cC---ChhHHHHHHHHHHHC-CCC-----CCHHHHHHHHHHHHhcCCccc-ccCHHHHHHHHH
Q 047873 211 --------------K--EN---RLDDAELLLHEMCER-GLT-----PNDVIFTTLIDGHCKNGRIDM-AGDMKEARKIVD 264 (464)
Q Consensus 211 --------------~--~~---~~~~a~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~~~~~ 264 (464)
. .+ .+..|...+.+-... ... .|... ..+..+++..|-+.. .|+...+..-|+
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 0 01 122222222221110 000 11111 223333333332221 345568889999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC
Q 047873 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344 (464)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 344 (464)
..+.....++. .|-.+..+|....+..+.+..|+...+.++. ++.+|..-.+...-.+++++|..=|++..... +-+
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~ 427 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PEN 427 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhh
Confidence 99886544332 3777778899999999999999999998766 77888888888888899999999999999875 345
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------H
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD---------D 415 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---------~ 415 (464)
...|..+..+..+.+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+...+. .|+ +
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~p 504 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAP 504 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchh
Confidence 667777888888899999999999999987 6667899999999999999999999999998863 232 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 416 ITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
.+-..++..-++ +++.+|..++++ ..+.|..
T Consensus 505 lV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 505 LVHKALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred hhhhhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 222233333234 889999999998 7777763
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=5.7e-09 Score=93.75 Aligned_cols=390 Identities=16% Similarity=0.144 Sum_probs=223.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
-+...+.+| ..+++...+++.+.++++. +....+.....-.+...|+-++|........+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~------------------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKF------------------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhC------------------CccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 344555544 5888999999888888532 222255555555566678888888877776665
Q ss_pred CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHH
Q 047873 89 YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 168 (464)
+ .-+...|+.++-.+...+++++|+..|+.++..+.. |...+.-+...-+..|+++.....-..+.+.. +.....|.
T Consensus 71 d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~ 147 (700)
T KOG1156|consen 71 D-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWI 147 (700)
T ss_pred C-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHH
Confidence 5 335667777777777778888888888888877655 67777776666677777776666665555542 22345566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 047873 169 TLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALI------NGLCKENRLDDAELLLHEMCERGLTPNDVIF-TTL 240 (464)
Q Consensus 169 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 240 (464)
.++.++.-.|++..|..+++...+.. ..|+...+.... ....+.|..++|.+.+..-... ..|...+ ..-
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~k 225 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhH
Confidence 66777777777777777777776543 234544443222 2233445555555444443322 1111111 122
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHHHhCCChHH--------------------------
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL-DGFCKEGDLES-------------------------- 293 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~-------------------------- 293 (464)
...+.+.++. ++|..++..++.. .||...|.... .++.+..+..+
T Consensus 226 a~l~~kl~~l------EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 226 ADLLMKLGQL------EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV 297 (700)
T ss_pred HHHHHHHhhH------HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH
Confidence 2233333333 4555555555543 23333332222 22211222222
Q ss_pred ---------HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH--------CC----------CCCCHh
Q 047873 294 ---------ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK--------VG----------LKPDDA 346 (464)
Q Consensus 294 ---------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~----------~~~~~~ 346 (464)
.-.++....+.|++ .++..+...|-.-...+ +++++.. .| -+|...
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 22233334444443 23333333332222111 3332221 00 134433
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047873 347 --TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423 (464)
Q Consensus 347 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 423 (464)
++-.+...+-+.|+++.|...++..++. .|+ +..|..-.+.+...|++++|..++++.++.. .+|...=..-+.
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 4455677788889999999999988885 344 4456666788888999999999999988653 345444435555
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047873 424 GHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 424 ~~~~~g~~~~a~~~~~~ 440 (464)
-..++...++|.+++.+
T Consensus 448 YmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHccccHHHHHHHHH
Confidence 56688888888888765
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=9.2e-09 Score=92.33 Aligned_cols=437 Identities=11% Similarity=0.105 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh---cCCC------------CChhhHHHHHHHHHh
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET---RGTH------------LPGLVLDALMIVYVD 71 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------~~~~~~~~l~~~~~~ 71 (464)
+..|-...+.+..+|+...-...|.+++..-..++...+..-.++- .+.+ .++..-+..+..+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4556666666777777777777777666555555444444433322 1222 122224566777889
Q ss_pred cCChhHHHHHHHHHHhCC------CCCChhcHHHHHHHHHcCCCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 72 LGFLDDAIQCFRLLRKHY------FRIPARGCRCLIDRMMRTNLP---TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
.+++++|.+.+..++..+ .+.+...|..+.....++.+. -....+++.++..-...=...|.+|...|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 999999999999886542 133455677776666654433 23344555555433323357899999999999
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC----------------------ChhHHHHHHHHHhhCCC-----
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK----------------------NLDEGFRLKSVMEGSGM----- 195 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~----- 195 (464)
|.++.|..+|++..+. ..+..-|..+.++|+.-. +++-....|+.+.....
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 9999999999998765 234445555555554321 12223334444433210
Q ss_pred ------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 047873 196 ------RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP------NDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263 (464)
Q Consensus 196 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 263 (464)
+.+...|..-. -...|+..+-...|.++.+. +.| -...|..+...|..+|+. +.|..+|
T Consensus 340 VlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l------~~aRvif 410 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL------DDARVIF 410 (835)
T ss_pred HHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH------HHHHHHH
Confidence 11222222222 22346677777788877664 222 244577888888888776 6999999
Q ss_pred HHHHhCCCCCC---HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhcc
Q 047873 264 DEMCTNGLNPD---KITYTILLDGFCKEGDLESALDIRKEMIKRGIE----------L-------DNVAFTALISGFCRG 323 (464)
Q Consensus 264 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~ 323 (464)
++..+...+-- ..+|......-.+..+++.|+.+.+.....-.. | +...|...+......
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987543211 345666666677888999999998876543111 1 334566677777778
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHh---cCCHHHH
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCK---HGQLKNA 399 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~a 399 (464)
|-++....+++++....+. ++.+.......+-...-++++.++|++-+..=..|+ ...|+..+..+.+ ...++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8999999999999887653 444444444455566778999999988877633344 4567877776654 2368999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHh--cCCCCc--hhHHHHhhcc
Q 047873 400 NMLLDTMLDLGVVPDDITYNILLEG--HCKHGNPEDFDKLQSE--KGLVSD--YACYTSLVSK 456 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~--~~~~p~--~~~~~~ll~~ 456 (464)
..+|+++++ |.+|...-+-.++-+ --+.|....|..++++ .++.+. ...|+..|+.
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999998 666643322222222 2255777778888876 343332 4556665554
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=4e-11 Score=113.65 Aligned_cols=251 Identities=14% Similarity=0.074 Sum_probs=150.9
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh---------cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK---------EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
+..++|.+.|++.++..+. +...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 4467777777777765543 45555555544332 234677777777777664 335566667777777778
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHH
Q 047873 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (464)
++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.++. +...+..++..+...|++ ++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~------ee 424 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGI------DD 424 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCH------HH
Confidence 8888888888777664 334556677777777888888888888887776433 222223333344455554 57
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
|...++++.....+-+...+..+..++...|+.++|...+.++...... +....+.+...|...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8888777765432223445666677777788888888888776654221 3344455555666666 366666666554
Q ss_pred CC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 339 VG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 339 ~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
.. -.+....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11222222 33334445666665555 666664
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.9e-09 Score=89.67 Aligned_cols=399 Identities=12% Similarity=0.064 Sum_probs=223.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
+.-+.+++.|+.+++.-+.- +.+..+.+-.-+...+...|++++|+.++..+...+ .++.+.
T Consensus 32 fls~rDytGAislLefk~~~-----------------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-----------------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-----------------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCccc
Confidence 33456666666666654411 222222344446667889999999999999988865 567778
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
+..+..++.-.|.+.+|..+-.+..+ ++---..++....+.|+-++-..+.+.+... ..---++......
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYM 163 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHH
Confidence 88888888889999999888766532 3444445556666777777766666665432 1223345555555
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCccc-
Q 047873 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSA-LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK--NGRIDM- 252 (464)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~- 252 (464)
.-.+++|.++|.+.... .|+-...|. +.-+|.+..-++-+.+++.-..+. ++.++...+.......+ .|+..+
T Consensus 164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 56688999999888765 345445544 344666777777788887777665 22233333322222211 121110
Q ss_pred --------------------------ccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047873 253 --------------------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306 (464)
Q Consensus 253 --------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (464)
..+-+.|++++-.+.+. -| ..-..++-.|.+.+++.+|..+..++...
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-- 314 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT-- 314 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--
Confidence 00112222222222221 11 12233555678889999998887765432
Q ss_pred CCCHHHHHHHHHHHhccC-------ChHHHHHHHHHHHHCCCC-----------------------------------CC
Q 047873 307 ELDNVAFTALISGFCRGG-------KVVEAERMLREMLKVGLK-----------------------------------PD 344 (464)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~-----------------------------------~~ 344 (464)
++.-|..-...+...| ...-|...|+-.-.++.. .|
T Consensus 315 --tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd 392 (557)
T KOG3785|consen 315 --TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND 392 (557)
T ss_pred --ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 2333322222222222 233333433332222111 11
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN-ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY-NILL 422 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~ 422 (464)
....-.+.++++..|.+.+|.++|-++....++ |..+|. .+.++|.+.+.++-|+.++-++. -+.+..++ ..+.
T Consensus 393 D~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIA 468 (557)
T KOG3785|consen 393 DDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIA 468 (557)
T ss_pred chhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHH
Confidence 111123566667777888888887666554444 445554 44567778888888777664442 22233333 3334
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCCchhHHHHhhccch
Q 047873 423 EGHCKHGNPEDFDKLQSEK-GLVSDYACYTSLVSKSS 458 (464)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~ 458 (464)
..|-+.+.+=-|.+.+.++ .+.|+++.|..--.+|+
T Consensus 469 n~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACA 505 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHH
Confidence 5566777666665655553 45777777776666654
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1e-10 Score=98.92 Aligned_cols=200 Identities=15% Similarity=0.039 Sum_probs=164.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
...+..+...+...|++++|++.|++..... +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3778889999999999999999999998775 446778888899999999999999999999987654 66788888999
Q ss_pred HHhcCChhhHHHHHHHHhhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
+...|++++|.+.+++...... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999886522 2234567778888999999999999999988764 3356678889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
|...+++..+. .+.+...+..+...+...|+. +.|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDV------AAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhH------HHHHHHHHHHHh
Confidence 99999998876 334566666777777777765 588888777654
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=7.7e-09 Score=92.91 Aligned_cols=371 Identities=13% Similarity=0.090 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+..-|-.++-.+-...++++|++.|+.++ .+.||+ .+|.-+.-.=.+.|+++.....-.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-------------------~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-------------------KIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHH-------------------hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444556677666777788888888888887 566777 777777666677778877777777
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHHH------HHHHHhcCChhhHHHHHHHHh
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVL------MHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~ 156 (464)
...+.. +.....|.....+..-.|+...|..+.+...+.. ..|+...+... .....+.|.++.|.+.+....
T Consensus 134 ~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 134 QLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 766663 2234456667777777788888888877776543 23444444322 223456677777777666554
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCChhHHH-HHHHHHHHC------
Q 047873 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC-KENRLDDAE-LLLHEMCER------ 228 (464)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~------ 228 (464)
.. +......-..-...+.+.+++++|..++..++.. .||...|...+..+. +..+..++. .+|....+.
T Consensus 213 ~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 213 KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 33 1111222234455667788888888888888776 466655554443333 232223333 444444332
Q ss_pred ----------------------------CCCCCHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHHHHhCC---------
Q 047873 229 ----------------------------GLTPNDVIFTTLIDGHCKNGRIDMAGDMK-EARKIVDEMCTNG--------- 270 (464)
Q Consensus 229 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~--------- 270 (464)
|+++ ++..+...|-.-...+ -++ -+..+...+...|
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~---~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA---FLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH---HHHHHHHHHHhhcccccCCCcccccc
Confidence 1111 1111111111100000 000 0111111111111
Q ss_pred -CCCCHHh--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhh
Q 047873 271 -LNPDKIT--YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347 (464)
Q Consensus 271 -~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (464)
-+|.... +-.++..+-..|+++.|...++....+-+. -...|..-...+...|+++.|..++++..+.+ .+|...
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 0333333 334556666777777777777777765221 23445555667777777777777777777765 345554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--cCHH----HHHH--HHHHHHhcCCHHHHHHHHHHH
Q 047873 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--PAVE----TYNA--LMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~----~~~~--l~~~~~~~g~~~~a~~~~~~~ 406 (464)
-..-+....+.++.++|.++.....+.|.. -+.. .|-. =..+|.+.|++..|++=|...
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 445666666777777777777776665431 0111 1111 134566666666666544443
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.5e-11 Score=100.75 Aligned_cols=230 Identities=11% Similarity=0.000 Sum_probs=192.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
+.++++|.+-|.+.+|.+.|+..+. -.|-..+|..|..+|.+..++..|+.+|......-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-------------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f- 286 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-------------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF- 286 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-------------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-
Confidence 5789999999999999999999883 34566788888999999999999999999887763
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (464)
|-+........+.+-..++.++|.++|+.+++.... +++....+...|.-.++++-|++.|+++.+.|+ .++..|+.+
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~Ni 364 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNI 364 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhH
Confidence 445555566778888899999999999999987654 777777777888889999999999999999996 488899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047873 171 INGHCKAKNLDEGFRLKSVMEGSGMRPD--VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248 (464)
Q Consensus 171 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (464)
.-+|.-.++++-++.-|++....-..|+ ...|-.+.......|++..|.+.|+-....+.. ....++.+.-.-.+.|
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcC
Confidence 9999999999999999988875433333 456777888889999999999999998877433 5677888887778887
Q ss_pred CcccccCHHHHHHHHHHHHhC
Q 047873 249 RIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~ 269 (464)
++ ++|..++......
T Consensus 444 ~i------~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 444 DI------LGARSLLNAAKSV 458 (478)
T ss_pred ch------HHHHHHHHHhhhh
Confidence 76 5999999888764
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=8e-10 Score=101.35 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=75.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 047873 314 TALISGFCRGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (464)
..+...|...|++++|+.+.++.+.+. |+ +..|..-...+-+.|++.+|.+.++..+..... |-..-+..+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 444556666777777777777776653 33 456666667777777777777777777765332 44444555666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHH
Q 047873 393 HGQLKNANMLLDTMLDLGVVPDDI------TY--NILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 393 ~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~a~~~~~ 439 (464)
+|+.++|.+++..+.+.+..|-.. .| .....+|.+.|++..|.+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777766554333211 11 334456667777777666544
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=6e-09 Score=95.49 Aligned_cols=402 Identities=14% Similarity=0.033 Sum_probs=262.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+++++..|..|.-++...|+++.+.+.|++... ..-.....|..+...|...|.-..|+.++
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~------------------~~~~~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP------------------FSFGEHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------------hhhhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 567788889999999999999999999998762 11223378888999999999999999998
Q ss_pred HHHHhCCCCCC-hhcHHHHHHHHH-cCCChhhHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcC-----------Ch
Q 047873 83 RLLRKHYFRIP-ARGCRCLIDRMM-RTNLPTVTLGFYLEILDYG----YSPSVYVFNVLMHKLCKEG-----------KI 145 (464)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~-----------~~ 145 (464)
+.-......|+ ...+......|. +.+..+++++.-.+++... -...+..+..+.-+|...- ..
T Consensus 381 ~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 381 RESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred HhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 87655432233 333333334443 4577888888777777621 1123444555554544321 13
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
.++.+.+++..+.+ +.|+.+...+.--|+..++++.|.+..++..+.+-..+...|..+.-++...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45677777777664 33555555566677888999999999999988765678889999999999999999999999887
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC---------------------CC-----CC--CHH
Q 047873 226 CERGLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---------------------GL-----NP--DKI 276 (464)
Q Consensus 226 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---------------------~~-----~~--~~~ 276 (464)
... .++ -.....-+..-..-+ +.++++.....+... |. .| ...
T Consensus 540 l~E--~~~N~~l~~~~~~i~~~~~------~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 540 LEE--FGDNHVLMDGKIHIELTFN------DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHH--hhhhhhhchhhhhhhhhcc------cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 654 111 000000011111111 122333322222110 00 00 011
Q ss_pred hHHHHHHHHH-hCC--ChHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 047873 277 TYTILLDGFC-KEG--DLESALDIRKEMIKRGIE--LD------NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 277 ~~~~l~~~~~-~~~--~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
++..+..... +.. ..+.. +...... |+ ...|......+.+.+..++|...+.+..... +...
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~ 684 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSA 684 (799)
T ss_pred hhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhH
Confidence 1221111111 000 00000 1111111 12 2356667778888999999999988887764 4566
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM--LLDTMLDLGVVPDDITYNILLE 423 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~ 423 (464)
..|......+...|..++|.+.|......+ +.++....++..++.+.|+..-|.. ++.++.+.+ +.+...|..+..
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 777878888889999999999999988853 2256778899999999998888887 999999864 348999999999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047873 424 GHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 424 ~~~~~g~~~~a~~~~~~ 440 (464)
.+.+.|+.++|...+..
T Consensus 763 v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHccchHHHHHHHHH
Confidence 99999999999888775
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=3.5e-10 Score=88.48 Aligned_cols=205 Identities=13% Similarity=-0.024 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
+.--|.-.|.+.|++..|.+-+++++ .+.|+. .+|..+...|.+.|..+.|.+.|++..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL-------------------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKAL-------------------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-------------------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 44566777889999999999999998 566777 8999999999999999999999999988
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
.. |-+..+.+..+..+|..|++++|...|++.+..- ......+|..+..+..+.|+++.|...|++..+.. +....+
T Consensus 98 l~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~ 175 (250)
T COG3063 98 LA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPA 175 (250)
T ss_pred cC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChH
Confidence 86 5567888889999999999999999999988642 22245677788888889999999999999988774 335667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
.-.+.....+.|++..|...++.....+. ++..+.-..++.-.+.|+.+.+-+.=..+.+. -|...-|
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 78888888999999999999999887764 78888888888888899988888777776654 3444433
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=2.6e-09 Score=98.06 Aligned_cols=307 Identities=12% Similarity=0.102 Sum_probs=172.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE-- 142 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 142 (464)
....+...|++++|++.++..... +.............+.+.|+.++|..+|..+++.++. +..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 344566777777777777664443 1222344556667777777777777777777776643 444444444444222
Q ss_pred ---CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 143 ---GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD-EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 143 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
.+.+...++|+++... -|.......+.-.+.....|. .+..++..+...|++ + +|+.|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHH
Confidence 2345556666666554 233333333322222222222 233344445555532 2 233333333322222222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhCCChHHHHH
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI--TYTILLDGFCKEGDLESALD 296 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~ 296 (464)
.+++...... ....+..... . ....-+|+.. ++..+...|...|++++|++
T Consensus 163 ~~l~~~~~~~---------------l~~~~~~~~~----~--------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 163 ESLVEEYVNS---------------LESNGSFSNG----D--------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHHHHHHHh---------------hcccCCCCCc----c--------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2222222211 0000000000 0 0001134442 34555677778888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047873 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376 (464)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 376 (464)
.++..+++.+. .+..|..-...+-+.|++.+|...++.+...+ .-|...-+-.+..+.+.|+.++|.+++......+.
T Consensus 216 ~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 216 YIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 88888887543 46778888888888888888888888888876 34666777777888888888888888888777643
Q ss_pred CcCHHH------H--HHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 377 LPAVET------Y--NALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 377 ~~~~~~------~--~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.|.... | .....+|.+.|++..|++.|....
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 332211 1 344677888888888877665554
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2e-08 Score=85.47 Aligned_cols=415 Identities=11% Similarity=0.036 Sum_probs=254.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKK--GMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
+.+.......+..|..-|...+... ..++...+..++-.+ .+.|.+ ..-...+..|...++-+.|+.....++..-
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S-~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESS-YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhcccccccccccccc-CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 3444455666777777777766422 222333333444444 333433 777778889999999999999887554331
Q ss_pred CCCChhcHHHHHHHHHcCC-ChhhHH--------------HHHHHHHhcC---------------CCCChhhHHHHHHHH
Q 047873 90 FRIPARGCRCLIDRMMRTN-LPTVTL--------------GFYLEILDYG---------------YSPSVYVFNVLMHKL 139 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~-~~~~a~--------------~~~~~~~~~~---------------~~~~~~~~~~l~~~~ 139 (464)
.....+.++..+.+.| +..++. +.+.-..+.+ .+|+.......+.++
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~ 204 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKAL 204 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHH
Confidence 1112233333333322 222222 2222122221 112222222333333
Q ss_pred Hh--cCChhhHHHHHHHHhhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCh
Q 047873 140 CK--EGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV-YTYSALINGLCKENRL 215 (464)
Q Consensus 140 ~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 215 (464)
+. .++...|..++-.+... -++-|......+...+...|+..+|...|+..... .|+. .....-.-.+.+.|+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 32 33444444444333322 23456667777888888888888888888887644 2322 2222233344567777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+....+...+.... .-....|..-........+ +..|+.+-++.++... .+...+-.-...+...+++++|.
T Consensus 283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~------~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKK------FERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhh------HHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHH
Confidence 77777776665431 1123333333333333333 3688888888777532 23445555566778889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHh-cCChHHHHHHHHHHHh
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI-DCFCK-NGDTKTGFRLLKEMRS 373 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~ 373 (464)
-.|+......+ .+..+|..++..|...|++.+|..+-+...+. ++.+..++..+. ..+.- ...-++|.+++++...
T Consensus 355 IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 355 IAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 99998887643 37789999999999999999998887776654 244566666553 33322 2335788888888777
Q ss_pred CCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 374 DGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 374 ~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
. .|+ ....+.+...+...|+...++.++++.+. ..||....+.|...+.....+++|...+.. +.+.|+.
T Consensus 433 ~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 433 I--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred c--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 4 455 44667788889999999999999999885 478999999999999999999999888776 7777753
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=4.9e-11 Score=97.82 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=117.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
.+..+|.+.|.+.+|...++..++.. |.+.+|..|..+|.+..++..|+.++.+-... .+-+.....-..+.+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 34455555555555555555544432 34444444555555555555555555554433 1222222233444444555
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHH
Q 047873 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (464)
+.++|.++|+...+.. +.++.....+...|.-.++++-|+..|+++.+.|+. ++..|..+.-+|.-.+++| -
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D------~ 376 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID------L 376 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh------h
Confidence 5555555555554432 223333333344444455555555555555555543 4455555555555555543 4
Q ss_pred HHHHHHHHHhCCCCCC--HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 047873 259 ARKIVDEMCTNGLNPD--KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336 (464)
Q Consensus 259 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (464)
++..|++....--.|+ ..+|-.+.......|++..|.+.|+-.+..+.. ....++.+.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 4555554443322222 223444555556667777777777766666443 4556666666666777777777777766
Q ss_pred HHC
Q 047873 337 LKV 339 (464)
Q Consensus 337 ~~~ 339 (464)
...
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 553
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.40 E-value=6.5e-09 Score=93.92 Aligned_cols=205 Identities=8% Similarity=-0.054 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|..+.+|..+...+...|+.++|.+.+.+...... ...+. .........+...|++++|.+.+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~ 66 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA----------------ARATERERAHVEALSAWIAGDLPKALALL 66 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56678899999999999999999888888764321 11222 33444455677889999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHH----cCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMM----RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+++.... |.+...+.. ...+. ..+....+.+.+..... ...........+...+...|++++|.+.+++..+.
T Consensus 67 ~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 67 EQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred HHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9988875 434444432 22222 24555555555544111 11123344556677889999999999999999887
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPDV--YTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
. +.+...+..+...+...|++++|..+++....... .++. ..|..+...+...|++++|..++++....
T Consensus 144 ~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 144 N-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 5 44567788899999999999999999999876532 1232 34557888999999999999999998654
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.4e-09 Score=90.01 Aligned_cols=266 Identities=10% Similarity=-0.050 Sum_probs=146.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.....+...+...|+.++|+..|++....+ +-+..........+.+.|+.++...+...+..... ....-|-.-+...
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLL 310 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhh
Confidence 666666667777777777777777666554 22333444444445566666666655555544221 1333343444445
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 219 (464)
...+++..|+.+-++..+.+ +.+...+..-...+...++.++|.-.|+..+... +-+...|.-|+.+|...|++.+|.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHH
Confidence 55666666666666655543 2334444444555666666777766666665542 234566667777777777776666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHHHHH
Q 047873 220 LLLHEMCERGLTPNDVIFTTLI-DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
-.-+...+. ++.+..+...+. ..+.-.... -++|.+++++..+. .|+ ....+.+...+...|..+.++.+
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~-----rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRM-----REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchh-----HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 555444332 122333333331 222221111 25666666665543 333 23445555566666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
++..+.. .||....+.+.+.+...+.+.+|.+.|..+.+.
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6666554 346666666666666666666666666666654
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.1e-08 Score=90.02 Aligned_cols=387 Identities=13% Similarity=0.049 Sum_probs=222.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
=.++....|++++|+..|...+ .+.|.+ ..|+.-..+|...|++++|++--.+-.+.. |
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai-------------------~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p 67 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAI-------------------MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-P 67 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHH-------------------ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3466778999999999999998 666666 889999999999999999999888877775 4
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH---HHHHHHHhhC---CCCCCcc
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA---QMVFDEFGKR---GLHATAV 165 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~---~~~~~~~ 165 (464)
.-+..|...+.++.-.|++++|+..|.+-++..+. +...++.+..++.......+. -.++..+... .......
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~ 146 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDP 146 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccH
Confidence 45788999999999999999999999999987655 677777777776222100000 0011111000 0000011
Q ss_pred cHHHHHHHHHhc----------CChhHHHHHHHH-----HhhC-------CCCC----------------------CHHH
Q 047873 166 SFNTLINGHCKA----------KNLDEGFRLKSV-----MEGS-------GMRP----------------------DVYT 201 (464)
Q Consensus 166 ~~~~l~~~~~~~----------~~~~~a~~~~~~-----~~~~-------~~~~----------------------~~~~ 201 (464)
.|..++..+-+. ..+..+...+.. +... +..| -..-
T Consensus 147 ~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 147 AYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 111111111100 001111111100 0000 0011 0112
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc-cCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-GDMKEARKIVDEMCTNGLNPDKITYTI 280 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (464)
...++++..+..+++.|++.+....+.. -+..-++..-.+|...+.+... +.-+.|.+.-.++... ...=...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHH
Confidence 3456777777777788887777777653 2444445555556555554331 1222333333332221 0000112233
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-------------------------HHHHHHHHhccCChHHHHHHHHH
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVA-------------------------FTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
+..++.+.++++.++..|.+.+.....|+... ...-...+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44466666777777777766655433332211 11123445667788888888888
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 047873 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 415 (464)
+++.. +-|...|+...-+|.+.|.+..|+.-.+..++.. ++....|.--..++....+++.|.+.|++.++. .|+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence 77775 5567778888888888888888877777777652 223444555555666667778888888777764 3544
Q ss_pred HHHHHHHHHHHh
Q 047873 416 ITYNILLEGHCK 427 (464)
Q Consensus 416 ~~~~~l~~~~~~ 427 (464)
.-+..-+.-|..
T Consensus 460 ~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 460 AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=3.3e-10 Score=102.55 Aligned_cols=243 Identities=16% Similarity=0.124 Sum_probs=164.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGS-----G-MRPDVYT-YSALINGLCKENRLDDAELLLHEMCER-----GL- 230 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 230 (464)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677899999999999999999887653 2 1233333 344778899999999999999998754 21
Q ss_pred -CCCHHHHHHHHHHHHhcCCcccccC-HHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhCCChHHHHHHHHHHHHc---
Q 047873 231 -TPNDVIFTTLIDGHCKNGRIDMAGD-MKEARKIVDEMCTNGLNPDK-ITYTILLDGFCKEGDLESALDIRKEMIKR--- 304 (464)
Q Consensus 231 -~~~~~~~~~l~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 304 (464)
+.-..+++.|...|.+.|+++.+.. .+.|.+++++.... ..|.. ..++.++..+...+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1124556677778999888752211 23344444441111 12222 23566777788889999999888876543
Q ss_pred CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHC----CC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 305 GIEL----DNVAFTALISGFCRGGKVVEAERMLREMLKV----GL---KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 305 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
-+.+ -..+++.|...|...|++.+|..+++++... +. .-....++.+...|.+.+.+++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1122 2357888888888889999998888887643 11 11234677788888888888888888877544
Q ss_pred C----C--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 374 D----G--HLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 374 ~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
. | .+-...+|..|...|.+.|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 1 12234678888888888888888888877765
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=3.3e-08 Score=82.52 Aligned_cols=363 Identities=13% Similarity=0.084 Sum_probs=210.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
+..++.+-|++++|+..|.-+.. ...++...+..|.-.+.-.|.+.+|..+-.+..+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~------------------~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----- 119 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN------------------KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----- 119 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc------------------cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----
Confidence 46788899999999999998874 4556778888888888889999999988775322
Q ss_pred ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH-H
Q 047873 93 PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL-I 171 (464)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~ 171 (464)
++-....++....+.++-++-..+.+.+.. ...--.+|.......-.+.+|+.++.++... .|+-...|.- .
T Consensus 120 ~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~A 192 (557)
T KOG3785|consen 120 TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMA 192 (557)
T ss_pred ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHH
Confidence 222333444455566776666666555543 1222334455544455678888888887765 3444444443 3
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CCh---------------------------------h
Q 047873 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE--NRL---------------------------------D 216 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~---------------------------------~ 216 (464)
-+|.+..-++-+.+++....+. ++.++...|..+....+. |+. +
T Consensus 193 LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 4556677777777777766544 122333334333222221 211 2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHH----------------
Q 047873 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI---------------- 280 (464)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------- 280 (464)
.|++++-.+.+. .| ..-..++-.|.+.++ +++|..+.+++... .|-......
T Consensus 272 gALqVLP~L~~~--IP--EARlNL~iYyL~q~d------VqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 272 GALQVLPSLMKH--IP--EARLNLIIYYLNQND------VQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cHHHhchHHHhh--Ch--Hhhhhheeeeccccc------HHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 222222222211 11 111223334445444 46887777765321 222222211
Q ss_pred -------------------------HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047873 281 -------------------------LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 281 -------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
+..++.-..++++++-.+..+..--.. |...--.+.++++..|++.+|+++|-+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 222222222333333333333332222 222233467788888999999999988
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047873 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV-ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 414 (464)
+....++.+..-...|.++|.+.+.++.|++++-++... .+. .....+..-|.+++.+--|.+.|+.+.. ..|+
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~ 493 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPT 493 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCC
Confidence 776555544444466778999999999998887555432 222 3344556788999999999999988875 4788
Q ss_pred HHHHHHHHHH
Q 047873 415 DITYNILLEG 424 (464)
Q Consensus 415 ~~~~~~l~~~ 424 (464)
+.-|..--.+
T Consensus 494 pEnWeGKRGA 503 (557)
T KOG3785|consen 494 PENWEGKRGA 503 (557)
T ss_pred ccccCCccch
Confidence 8877653333
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=9.1e-10 Score=95.63 Aligned_cols=204 Identities=11% Similarity=-0.055 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...|..++.+|...|++++|+..|++++ ...|+. .+|+.+...+...|++++|+..|++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al-------------------~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQAL-------------------ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4668889999999999999999999998 556666 99999999999999999999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
.+.. |-+..++..++..+...|++++|.+.+++.++..+. ++ ........+...+++++|...|.+..... +++.
T Consensus 125 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~- 199 (296)
T PRK11189 125 LELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQ- 199 (296)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cccc-
Confidence 9876 445678888999999999999999999999987644 33 22222333456788999999997755432 2332
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhC---CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 047873 166 SFNTLINGHCKAKNLDEGFRLKSVMEGS---GM---RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238 (464)
Q Consensus 166 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 238 (464)
|. ........|+...+ +.++.+.+. .+ +....+|..+...+...|++++|+..|++..+.++ |+...+.
T Consensus 200 -~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~ 274 (296)
T PRK11189 200 -WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHR 274 (296)
T ss_pred -cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHH
Confidence 22 12233345665544 344444422 11 11345788899999999999999999999998753 3444443
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=1.4e-08 Score=94.41 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=116.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh--------cCCCCChhhHHHHHHHHHhcC
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--------RGTHLPGLVLDALMIVYVDLG 73 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g 73 (464)
|+.|+-.+|..+|..|...|+.+.|. +|.-|. ..+..-...+|..+..+ ....|...+|..|..+|...|
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 67899999999999999999999999 777774 44555566666666654 223556689999999999999
Q ss_pred ChhHHHHHHHH----HH----hCCCCCChhcH--------------HHHHHHHHcCCChhhHHHHHHHH-----------
Q 047873 74 FLDDAIQCFRL----LR----KHYFRIPARGC--------------RCLIDRMMRTNLPTVTLGFYLEI----------- 120 (464)
Q Consensus 74 ~~~~A~~~~~~----~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~----------- 120 (464)
+... ++..++ +. ..|+.....-+ ...+....-.|-++.+++++..+
T Consensus 98 Dli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 98 DLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred chHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 9765 333222 21 11211111101 11111122223333333332111
Q ss_pred ------------------HhcCC-CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh
Q 047873 121 ------------------LDYGY-SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181 (464)
Q Consensus 121 ------------------~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (464)
.+.+. .|++.++..++.+-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++..
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 11111 255555556666555666666666666666666655555544444433 45555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047873 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213 (464)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (464)
-+..++..|...|+.|+..|+...+-.+..+|
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 55555555666666666666555554444433
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=1.5e-08 Score=84.08 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+.-..-++..+..+|++.+|+..|+.++ ...|++ .++..-...|...|+...|+.-|.++
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAv-------------------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAV-------------------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 3444567888899999999999999998 566777 77777788899999999999999999
Q ss_pred HhCCCCCCh-hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhH------------HHHHHHHHhcCChhhHHH
Q 047873 86 RKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVF------------NVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 86 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~ 150 (464)
.+. .|+- .+...-...+.+.|.+++|..=|+.++...+... ...+ ...+..+...|+...|+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 887 4553 3445566778899999999999999998764311 1111 223344666789999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
....+.+.. +-+...+..-..+|...|.+..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++..+.
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 999988764 4577888888999999999999998887776654 346667777888889999999999999988876
Q ss_pred CCCHHH----HHHH---HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhCCChHHHHHHHHH
Q 047873 231 TPNDVI----FTTL---IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI---TYTILLDGFCKEGDLESALDIRKE 300 (464)
Q Consensus 231 ~~~~~~----~~~l---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 300 (464)
.||... |-.+ ...+......-..+++.++++..+...+..+..... .+..+-.++...+++.+|++...+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 344221 2111 111111111111234567777777776654332222 345556677778888899988888
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 047873 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340 (464)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (464)
+++.... |..++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 333 vL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 333 VLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8876432 57788888888888888999999888888764
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=5e-09 Score=85.20 Aligned_cols=325 Identities=13% Similarity=0.138 Sum_probs=215.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+.+.+..+.+..++.+|++++.... ...| +...++.+...|....++..|-..++++-..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~-------------------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSEL-------------------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH-------------------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777788999999999988876 3345 4488889999999999999999999998876
Q ss_pred CCCCChhcHH-HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH--HH--HHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 89 YFRIPARGCR-CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM--HK--LCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 89 ~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
. |...-|. .-...+-+.+.+..|+.+...|... ....+..+ .+ ....+++..+..+.++....| +
T Consensus 74 ~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~ 143 (459)
T KOG4340|consen 74 H--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---E 143 (459)
T ss_pred C--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---c
Confidence 4 4433333 3456677889999999998887642 22222222 22 335688999999999887543 5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT------------ 231 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------ 231 (464)
..+.+.......+.|+++.|.+-|+...+-+--.....|+.-+ ++.+.|+++.|++...++.++|+.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 5666666667779999999999999888764334556777544 556789999999999999887643
Q ss_pred -CCHH--------HHHHHHHH-------HHhcCCcccccCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhCCChHHH
Q 047873 232 -PNDV--------IFTTLIDG-------HCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 232 -~~~~--------~~~~l~~~-------~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 294 (464)
||.. .-+.++.+ +.+. ++++.|.+.+.+|..+. ...|++|...+.-. -..+++...
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~------~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL------RNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhc------ccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 1211 11222222 2333 34467887777775432 23466666555432 234566667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh-cCChHHHHHHHHHHH
Q 047873 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK-PDDATYTMVIDCFCK-NGDTKTGFRLLKEMR 372 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~ 372 (464)
.+-+.-++..++- ...||..++..||+..-++-|.+++.+-...... .+...|+ ++.++.. .-..++|.+-+..+.
T Consensus 296 ~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 296 FEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 7767777777553 5678888999999999999998887653221111 1222233 3444433 345666666555544
Q ss_pred h
Q 047873 373 S 373 (464)
Q Consensus 373 ~ 373 (464)
+
T Consensus 374 ~ 374 (459)
T KOG4340|consen 374 G 374 (459)
T ss_pred H
Confidence 3
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=2.3e-09 Score=99.57 Aligned_cols=270 Identities=16% Similarity=0.166 Sum_probs=174.4
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh
Q 047873 50 LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129 (464)
Q Consensus 50 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 129 (464)
.+..|+.|+..+|..++.-|+..|+.+.|- +|..|.-.+.+.....+..++......++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 333499999999999999999999999988 9999988887888888999998888888877664 5788
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 047873 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALING 208 (464)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 208 (464)
.+|..|..+|...||... |+...+ ....+...+...|.-.....++..+.-. +.-||..+ ++..
T Consensus 84 Dtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ill 148 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILL 148 (1088)
T ss_pred hHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHH
Confidence 999999999999999766 222222 1122233344445444444444443221 22334332 3333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC
Q 047873 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (464)
..-.|-++.+++++..+...... .+. ...++-+..... .+++...+.+.... .|+..+|..++.+-.-.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~-~p~--~vfLrqnv~~nt-----pvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWN-APF--QVFLRQNVVDNT-----PVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCccccc-chH--HHHHHHhccCCc-----hHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 44456666666666555432111 011 112333322222 23333333333332 36777788888877788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888888877777766666554 67777777788888888888888887776666665433
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=7.2e-10 Score=100.39 Aligned_cols=254 Identities=17% Similarity=0.118 Sum_probs=142.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhcCChhHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~ 80 (464)
+|.-..+...|...|+..|+++.|..++++++.. +-+..| ..|.. ...+.+...|...+++++|+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~------------l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ 262 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI------------LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVN 262 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH------------HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444556667999999999999999999999842 111112 12233 344457778888888888888
Q ss_pred HHHHHHhC-----CC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-----CC-CC-hhhHHHHHHHHHhcCChh
Q 047873 81 CFRLLRKH-----YF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-----YS-PS-VYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 81 ~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~-~~~~~~l~~~~~~~~~~~ 146 (464)
+|+++... |. +--..++..|...|.+.|++++|...++++++.- .. |. ...++.+...+...++++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 88876542 21 1113445666666777777777766666554321 00 11 112233444444455555
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+|..++....+. +.........--..+++.|...|...|++++|.++|++..
T Consensus 343 ea~~l~q~al~i----------------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 343 EAKKLLQKALKI----------------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHHHHHHHHH----------------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 555444432211 0000000000123456667777777777777777776665
Q ss_pred HC----CC---CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh----CC--CCCCHHhHHHHHHHHHhCCChHH
Q 047873 227 ER----GL---TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT----NG--LNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 227 ~~----~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
.. +. .-....++.+...|.+.+++. +|.++|.+... .| .+-...+|..|...|...|+++.
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~------~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYE------EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccc------hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence 43 11 112344556666666666553 44444443321 12 22234678888888888888888
Q ss_pred HHHHHHHHH
Q 047873 294 ALDIRKEMI 302 (464)
Q Consensus 294 a~~~~~~~~ 302 (464)
|.++.+.+.
T Consensus 469 a~~~~~~~~ 477 (508)
T KOG1840|consen 469 AEELEEKVL 477 (508)
T ss_pred HHHHHHHHH
Confidence 888877766
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=7.7e-12 Score=75.91 Aligned_cols=50 Identities=48% Similarity=0.891 Sum_probs=38.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047873 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (464)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777788888777777777788788777777753
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=4.2e-09 Score=82.55 Aligned_cols=199 Identities=14% Similarity=0.019 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+...|.-.|.+.|++..|.+-+++..+.+ |.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 566778889999999999999999999997 557788999999999999999999999999998776 888999999999
Q ss_pred HhcCChhhHHHHHHHHhhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 140 CKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
|..|++++|.+.|+..... ....-..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.+...+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998765 222345688888889999999999999999998874 33456778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
...++.....+. ++..+.-..|+.-...|+. ..+.++=.++..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~------~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDR------AAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccH------HHHHHHHHHHHH
Confidence 999999988765 7888877778877777775 244444444443
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=6.4e-09 Score=90.37 Aligned_cols=127 Identities=11% Similarity=-0.070 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..|..+...|.+.|++++|+..|++..+.. |.+..+|..+...+...|++++|...|++.++..+. +..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445555556666666666666666665554 334555666666666666666666666666654433 444555555555
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 190 (464)
...|++++|.+.|+...+. .|+..........+...+++++|...++..
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5666666666666665554 222211111122223344555666555443
No 86
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.28 E-value=5e-07 Score=79.92 Aligned_cols=413 Identities=12% Similarity=0.094 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.|+.+|+.||+-+..+ -.+++.+.|+++. +.-|.. ..|..-+..-.+.++++...++|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~-------------------~~FP~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLV-------------------NVFPSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHh-------------------ccCCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 67899999999966655 9999999999998 445555 99999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHc-CCChh----hHHHHHHHHH-hcCCCC-ChhhHHHHHHH---------HHhcCChh
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMR-TNLPT----VTLGFYLEIL-DYGYSP-SVYVFNVLMHK---------LCKEGKIK 146 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~ 146 (464)
.+..... .+...|...+.--.+ .++.. .-.+.|+-.+ +.|..+ +...|+..+.. +....+++
T Consensus 77 ~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~ 154 (656)
T KOG1914|consen 77 SRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRIT 154 (656)
T ss_pred HHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHH
Confidence 9988763 345566665544332 22222 2334444443 345332 33455555543 33444566
Q ss_pred hHHHHHHHHhhCCCCCCcccHH------HHHHHH-------HhcCChhHHHHHHHHHhh--CCCCCCHHH----------
Q 047873 147 DAQMVFDEFGKRGLHATAVSFN------TLINGH-------CKAKNLDEGFRLKSVMEG--SGMRPDVYT---------- 201 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~------~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------- 201 (464)
...++|.++....+.-=...|+ .=|+.. -+...+..|.++++++.. .|...+..+
T Consensus 155 ~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 155 AVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 7777888776542211011121 111111 123456677777776653 243333222
Q ss_pred -----HHHHHHHHHhcCCh--------hHHHHHHHHHH-HCCCCCCHHHH-H----HHHHHHHhcCCccccc-CHHHHHH
Q 047873 202 -----YSALINGLCKENRL--------DDAELLLHEMC-ERGLTPNDVIF-T----TLIDGHCKNGRIDMAG-DMKEARK 261 (464)
Q Consensus 202 -----~~~l~~~~~~~~~~--------~~a~~~~~~~~-~~~~~~~~~~~-~----~l~~~~~~~~~~~~~~-~~~~a~~ 261 (464)
|..+|..=...+-- ....=++++.. -.+..|+.... . ..-..+...|+...+. --.++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 22222221111110 01111222211 11222221110 0 1111222333322211 1356667
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 262 IVDEMCTNGLNPDKITYTILLDGFCKEG---DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
++++.+..-...+..+|..+...--..- ..+.....+++++..-..--..+|..+++.-.+..-+..|..+|.++.+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 7777665433333344444333221111 3556666777766543222346788889988899999999999999999
Q ss_pred CCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 047873 339 VGLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD--D 415 (464)
Q Consensus 339 ~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~ 415 (464)
.+..+ ...++++++..++ .++..-|.++|+.-.+. +..++.-....+..+.+.|+-..+..+|++....++.|+ .
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~ 472 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK 472 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH
Confidence 87665 6667778887765 67889999999987775 444556667889999999999999999999998766664 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 416 ITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..|..++.--..-|+...+.++-++
T Consensus 473 ~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 473 EIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7899999999999999999888765
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=2e-11 Score=74.03 Aligned_cols=49 Identities=43% Similarity=0.895 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047873 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245 (464)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (464)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..+|+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.2e-07 Score=82.90 Aligned_cols=381 Identities=14% Similarity=0.083 Sum_probs=233.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
.=++.+...|++++|++...++...+ |-+..++.+-+.++.+.+++++|+.+.+.-... ..+...+-.=+.+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34566888999999999999999886 556778888888999999999999665543211 111111112234455789
Q ss_pred ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--------------------------
Q 047873 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-------------------------- 197 (464)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------- 197 (464)
..++|+..++-... .+..+...-.+.+.+.+++++|+++|+.+.+.+.+.
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 99999999983322 234466777888999999999999999986543210
Q ss_pred -CHHHHHHHH---HHHHhcCChhHHHHHHHHHHHC-------CCCCC------H-HHHHHHHHHHHhcCCcccccCHHHH
Q 047873 198 -DVYTYSALI---NGLCKENRLDDAELLLHEMCER-------GLTPN------D-VIFTTLIDGHCKNGRIDMAGDMKEA 259 (464)
Q Consensus 198 -~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~-------~~~~~------~-~~~~~l~~~~~~~~~~~~~~~~~~a 259 (464)
...+|..+. ..+...|++.+|+++++...+. +-.-+ . ..-..+.-.+...|+. ++|
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt------~ea 243 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT------AEA 243 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch------HHH
Confidence 111333333 3455789999999999988321 10000 1 1122334445566665 699
Q ss_pred HHHHHHHHhCCCCCCHHh----HHHHHHHHHhCCChHH--HHHHHH----------------------------------
Q 047873 260 RKIVDEMCTNGLNPDKIT----YTILLDGFCKEGDLES--ALDIRK---------------------------------- 299 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~--a~~~~~---------------------------------- 299 (464)
..++...+.... +|... -|.++.. ..-.++.. ++..++
T Consensus 244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988754 33311 1222211 11111100 000000
Q ss_pred ------HHHHc--CCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 047873 300 ------EMIKR--GIELDNVAFTALISGFCR--GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369 (464)
Q Consensus 300 ------~~~~~--~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 369 (464)
+.... +..| ...+..++..+.+ ...+..+..++....+........+....++.....|+++.|.+++.
T Consensus 322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 01111 1111 2344444443332 22456677777666554322223455666777889999999999999
Q ss_pred --------HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 047873 370 --------EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL--GVVP----DDITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 370 --------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~ 435 (464)
.+.+.+. .+.+...+...+.+.++.+.|..++.+.+.. .-.+ -..++..++..-.+.|+.++|.
T Consensus 401 ~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 4444333 3455667777788888887788877776531 0111 2234444455556889999999
Q ss_pred HHHHh-cC-CCCchhHHHHhhccchhhhh
Q 047873 436 KLQSE-KG-LVSDYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 436 ~~~~~-~~-~~p~~~~~~~ll~~~~~~~~ 462 (464)
..+++ .. ..+|..+...++.++++.+.
T Consensus 479 s~leel~k~n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 479 SLLEELVKFNPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhcCH
Confidence 99999 45 45578899999998887654
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.25 E-value=1.1e-07 Score=86.03 Aligned_cols=201 Identities=11% Similarity=-0.046 Sum_probs=130.1
Q ss_pred CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh-hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 57 LPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR-IPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 57 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
||. ..+..+...+...|+.+.+.+.+....+.... ++. +........+...|++++|.+.++++++..+. +...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 444 67777788888889999988888777655321 121 22223344566789999999999999886544 444444
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHhhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047873 134 VLMHKLCK----EGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208 (464)
Q Consensus 134 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (464)
. ...+.. .+..+.+.+.++.... ..|+ ......+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 2 222333 3444555555544111 1222 2333455667788999999999999988764 3456677888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 209 LCKENRLDDAELLLHEMCERGLT-PND--VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
+...|++++|...+++..+.... ++. ..|..+...+...|++ ++|..++++...
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~------~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY------EAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH------HHHHHHHHHHhc
Confidence 89999999999999888765321 222 2344566677777765 588888888754
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=2.6e-07 Score=87.37 Aligned_cols=403 Identities=10% Similarity=-0.020 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..+|..|++.|...-+...|.+.|.++. .+.++. .++..+...|.+..+++.|..+.-..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAF-------------------eLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAF-------------------ELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------cCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4578888888888778888999998888 666776 89999999999999999999984333
Q ss_pred HhCCC-CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCc
Q 047873 86 RKHYF-RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164 (464)
Q Consensus 86 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (464)
-+... ..-...|....-.+.+.++...|+..|+..++..+. |...|..++.+|.+.|++..|.++|++.... .|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 32210 011233555666778889999999999999998776 8999999999999999999999999988765 3332
Q ss_pred ccHH--HHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHCC
Q 047873 165 VSFN--TLINGHCKAKNLDEGFRLKSVMEGS------GMRPDVYTYSALINGLCKENRL-------DDAELLLHEMCERG 229 (464)
Q Consensus 165 ~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~ 229 (464)
+|. ...-..+..|.+.+++..+...... +..--..++-.+...+.-.|=. +++++.|.-.....
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 222 2233445789999999988877632 1111122232222222222322 23333333332222
Q ss_pred CCCCHHHHHHHHHHHHhcCCccc-ccCHHHHHHHH-HHHHhCCCCC--------------------CHHhHHHHHHHHHh
Q 047873 230 LTPNDVIFTTLIDGHCKNGRIDM-AGDMKEARKIV-DEMCTNGLNP--------------------DKITYTILLDGFCK 287 (464)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~~~~-~~~~~~~~~~--------------------~~~~~~~l~~~~~~ 287 (464)
...+...|-.+..+|.-.-.... ... .....++ .+....+..| +..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn-~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVN-MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchH-HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 12233333333222211100000 000 0111111 1111111111 12233334333332
Q ss_pred ----CC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 047873 288 ----EG----DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359 (464)
Q Consensus 288 ----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 359 (464)
.+ +...|+..+...++.... +..+|+.|.-. ...|++.-|...|-+-.... +....+|..+...+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 11 233566666666655332 55666666544 66688888888887766654 456678888888889999
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM--L--DLGVVPDDITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~--~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 435 (464)
+++.|...|...+... +.+...|-.........|+.-++..+|..- . ..|--|...-|..........|+.++-+
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999999988852 235556665555566778888888888662 2 3345567777777777777888877744
Q ss_pred HH
Q 047873 436 KL 437 (464)
Q Consensus 436 ~~ 437 (464)
.-
T Consensus 944 ~t 945 (1238)
T KOG1127|consen 944 NT 945 (1238)
T ss_pred HH
Confidence 33
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=1.5e-06 Score=80.35 Aligned_cols=372 Identities=16% Similarity=0.055 Sum_probs=245.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHH-HhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVY-VDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~-~~~g~~~~A~~~~~ 83 (464)
..+.|+.+.-.|+..|.-..|..+++..... .-.|++ ..+......| .+.|..++++....
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~-----------------~~~ps~~s~~Lmasklc~e~l~~~eegldYA~ 418 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKK-----------------SEQPSDISVLLMASKLCIERLKLVEEGLDYAQ 418 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhccc-----------------ccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence 4567888999999999999999998887632 111444 4444444444 46678889888888
Q ss_pred HHHhC--C--CCCChhcHHHHHHHHHcC----C-------ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 84 LLRKH--Y--FRIPARGCRCLIDRMMRT----N-------LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 84 ~~~~~--~--~~~~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
++... + -...+..+..++-+|... . ...++++.+++..+.++. |+.+..-+.--|+..++.+.|
T Consensus 419 kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sA 497 (799)
T KOG4162|consen 419 KAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSA 497 (799)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHH
Confidence 87662 1 123455666666665432 1 234678888888887765 555544566678999999999
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+..... .|+ ......-+..-...++.++++.....+..
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 999999988754668889999999999999999999999887643 111 11111111222224555554444333321
Q ss_pred C---------------------C-------CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC--CCC---
Q 047873 228 R---------------------G-------LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL--NPD--- 274 (464)
Q Consensus 228 ~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 274 (464)
. | ..-...++..+.......+.. .+ .+.. +....+ .|+
T Consensus 576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~--~~-se~~------Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS--AG-SELK------LPSSTVLPGPDSLW 646 (799)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh--cc-cccc------cCcccccCCCCchH
Confidence 1 0 000111222222211110000 00 0000 111111 122
Q ss_pred ---HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 047873 275 ---KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351 (464)
Q Consensus 275 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (464)
...|......+.+.++.++|...+.+.....+ .....|......+...|..++|...|......+ +.+.....++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Al 724 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 12345566778888999999988888877643 367778888888889999999999999998865 3345678899
Q ss_pred HHHHHhcCChHHHHH--HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 352 IDCFCKNGDTKTGFR--LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 352 l~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
..++.+.|+..-|.. ++..+.+.+. .+...|-.+...+-+.|+.+.|.+.|....+.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999999998887777 9999998743 37899999999999999999999999988753
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=1.2e-06 Score=89.59 Aligned_cols=339 Identities=12% Similarity=0.011 Sum_probs=213.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC------CC--hhhHHHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS------PS--VYVFNVLM 136 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~ 136 (464)
....+...|+++.+..+++.+.......+..........+...|+++++..++..+...-.. +. ......+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34455667888888888776532211122333344455666789999999999887643111 11 12222334
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHHHHHHHH
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHATA----VSFNTLINGHCKAKNLDEGFRLKSVMEGS----GM-RPDVYTYSALIN 207 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 207 (464)
..+...|+++.|...++.........+. ...+.+...+...|+++.|...+++.... |. .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 5567899999999999987653111111 23455666777899999999999887642 21 111234556677
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC--CCC--CHH
Q 047873 208 GLCKENRLDDAELLLHEMCER----GLT--P-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--LNP--DKI 276 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~ 276 (464)
.+...|++++|...+++.... +.. + ....+..+...+...|++ ++|...+.+..... ..+ ...
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~------~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL------DEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH------HHHHHHHHHhHHhhhccCchHHHH
Confidence 888999999999998886553 211 1 122333444556666665 58888888775431 112 233
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhccCChHHHHHHHHHHHHCCCCCC---Hhh
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIEL-DNVAF-----TALISGFCRGGKVVEAERMLREMLKVGLKPD---DAT 347 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 347 (464)
.+..+...+...|+++.|.+.++......... ....+ ...+..+...|+.+.|..++........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 45556677889999999999988875531110 11111 1122444568899999999877654221111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 348 YTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
+..+..++...|++++|...+++.... +..+ ...+...+..++.+.|+.++|...+.+..+.
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777888999999999999988764 2222 2345667778889999999999999998864
No 93
>PLN02789 farnesyltranstransferase
Probab=99.08 E-value=1.9e-07 Score=81.07 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC-ChhHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG-FLDDAIQCFRLL 85 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~ 85 (464)
.+++.+-.++...+..++|+.++.+++ .+.|+. .+|+....++...| ++++++..++++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI-------------------~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVI-------------------RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH-------------------HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 456667777777888888888888888 567777 89998888888888 689999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCCh--hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLP--TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
...+ +-+..+|......+.+.|.. ++++..++++++..+. +..+|+....++...|+++++++.++++.+.+ +.|
T Consensus 99 i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N 175 (320)
T PLN02789 99 AEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRN 175 (320)
T ss_pred HHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCc
Confidence 9886 44666777666666666653 6789999999988776 89999999999999999999999999999876 346
Q ss_pred cccHHHHHHHHHhc---CCh----hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCC
Q 047873 164 AVSFNTLINGHCKA---KNL----DEGFRLKSVMEGSGMRPDVYTYSALINGLCKE----NRLDDAELLLHEMCERGLTP 232 (464)
Q Consensus 164 ~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~ 232 (464)
...|+.....+.+. |.+ +..+.....++... +-+...|+.+...+... +...+|.+.+.+..+.++ .
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~ 253 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-N 253 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-C
Confidence 77787776666554 223 45667776666654 44677888888887773 345668888888776543 3
Q ss_pred CHHHHHHHHHHHHhc
Q 047873 233 NDVIFTTLIDGHCKN 247 (464)
Q Consensus 233 ~~~~~~~l~~~~~~~ 247 (464)
+......|+..|+..
T Consensus 254 s~~al~~l~d~~~~~ 268 (320)
T PLN02789 254 HVFALSDLLDLLCEG 268 (320)
T ss_pred cHHHHHHHHHHHHhh
Confidence 677788888888763
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1e-06 Score=78.04 Aligned_cols=379 Identities=13% Similarity=-0.016 Sum_probs=229.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
.++....|+++.|+..|-.....+ |++...|..-..++.+.|++++|+.=-.+..+..+. =+..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 345677899999999999999887 557788888999999999999998877777765432 356889999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHH---HHHHHHhhC---CCCCCHHHHHHHHHHHHhc-------
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF---RLKSVMEGS---GMRPDVYTYSALINGLCKE------- 212 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------- 212 (464)
++|+..|.+-.+.. +.+...++-+..++.......+.+ .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988764 345666677777662110000000 011111100 0000111222222221110
Q ss_pred ---CChhHHHHHHHHH-----HHC-------CCCC------------C----------HHHHHHHHHHHHhcCCcccccC
Q 047873 213 ---NRLDDAELLLHEM-----CER-------GLTP------------N----------DVIFTTLIDGHCKNGRIDMAGD 255 (464)
Q Consensus 213 ---~~~~~a~~~~~~~-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~~~~~~~~~ 255 (464)
.++..+...+... ... +..| | ..-...+.++..+..++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f----- 240 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF----- 240 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH-----
Confidence 0111111111100 000 0001 0 11234556666665544
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHH-HHH-------HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 047873 256 MKEARKIVDEMCTNGLNPDKITYTIL-LDG-------FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327 (464)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (464)
..+++-+....... ...+|... ..+ ....+..+.|.+.-.+.... ...=...+..+..+|.+.++++
T Consensus 241 -~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 241 -ETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred -HHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHHhhhhhhhHHhHH
Confidence 57887777776643 22333222 111 22334445555544443321 0001123333555777888999
Q ss_pred HHHHHHHHHHHCCCCCCHhhH-------------------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH
Q 047873 328 EAERMLREMLKVGLKPDDATY-------------------------TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382 (464)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (464)
.+...|.+.......|+...- ..-...+.+.|++..|+..|.++++.. +-|...
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 999999887765434432221 112455678899999999999999985 458899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccchh
Q 047873 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKSSK 459 (464)
Q Consensus 383 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~~~ 459 (464)
|....-+|.+.|.+..|+.-.+...+.. ++....|..=..++....+++.|.+.+.+ ....|+..-+.--++.|..
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 9999999999999999999988888752 23444555556666677889999998887 6777776666555555544
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.5e-06 Score=80.87 Aligned_cols=363 Identities=12% Similarity=0.091 Sum_probs=205.2
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
..+-|.+++|..+|++.-. +..|-..|...|.|++|+++-+.-.+..+ ..+
T Consensus 810 AieLgMlEeA~~lYr~ckR--------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~T 860 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR--------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNT 860 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH--------------------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhh
Confidence 3456677777777776641 22333456667778888777765333321 234
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHH----------HhcC---------CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEI----------LDYG---------YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
|......+...++.+.|++.|++. +... -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 555555556666777777766652 1111 112444555555555566667777766665432
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047873 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
|-.+++..+-.|+.++|-++-++- -|...+..+.+.|-..|++.+|...|.+... +
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 445555666667777776665542 3666777899999999999999999987653 2
Q ss_pred HHHHHHHHhcCCccc---------ccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHH--------H
Q 047873 238 TTLIDGHCKNGRIDM---------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK--------E 300 (464)
Q Consensus 238 ~~l~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 300 (464)
...|+.|-.++--|. ..+.-.|-++|++.-. -+...+..|-+.|.+.+|+++-- +
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 333333333221110 1233455556655421 12233445677787777776521 1
Q ss_pred HH--HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC
Q 047873 301 MI--KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHL 377 (464)
Q Consensus 301 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 377 (464)
++ +.+...|+...+.-...++...++++|..++-..++ |...+..|...+ ..-..++-+.|.-. .-.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCC
Confidence 22 223345778888888888889999999988876654 333444443332 22223333333211 112
Q ss_pred cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----------------HHHH
Q 047873 378 PA----VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----------------FDKL 437 (464)
Q Consensus 378 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----------------a~~~ 437 (464)
|+ ......+...|.++|.+..|.+-|-++-+ + ...++++.++|+.++ |..+
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANy 1209 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANY 1209 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhh
Confidence 22 23456677888888888888776655421 1 124456666666654 4444
Q ss_pred HHhcCCCCchhHHHHhhccchh
Q 047873 438 QSEKGLVSDYACYTSLVSKSSK 459 (464)
Q Consensus 438 ~~~~~~~p~~~~~~~ll~~~~~ 459 (464)
++.+..+.++.+..-++..|.|
T Consensus 1210 LQtlDWq~~pq~mK~I~tFYTK 1231 (1416)
T KOG3617|consen 1210 LQTLDWQDNPQTMKDIETFYTK 1231 (1416)
T ss_pred hhhcccccChHHHhhhHhhhhc
Confidence 5555555555555555555544
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=2.1e-06 Score=87.86 Aligned_cols=373 Identities=10% Similarity=0.003 Sum_probs=226.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.........+...|++.+|+..+...... ..-..........+...|++..+..++..+.......++.........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 44455566677777877777655443111 0001122223344556777777777766542211122334444556667
Q ss_pred HhcCChhhHHHHHHHHhhCC--C----CCC--cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRG--L----HAT--AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALIN 207 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~ 207 (464)
...|+++++...+......- . .+. ......+...+...|+++.|...++.....-...+ ....+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 78899999999998775431 0 011 11122233455679999999999998765311112 134456677
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC----CCC--C-CH
Q 047873 208 GLCKENRLDDAELLLHEMCER----GLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN----GLN--P-DK 275 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 275 (464)
.+...|++++|...+++.... +.. ........+...+...|++ +.|...+++.... +.. + ..
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~------~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL------QAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHHHHhccccccHHH
Confidence 788899999999999887643 111 1122344455566677765 5888887776542 211 1 22
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-CHhhH--
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRG--IEL--DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-DDATY-- 348 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-- 348 (464)
..+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.+.|...+..+....... ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455667778899999999998876531 111 23345556667788999999999998885421011 11111
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 047873 349 ---TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA---VETYNALMNGLCKHGQLKNANMLLDTMLDL----GVVP-DDIT 417 (464)
Q Consensus 349 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~ 417 (464)
...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..+ ...+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 1122444567899999998777554311111 112456677888999999999999888642 3222 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 047873 418 YNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
...+..++.+.|+.++|...+.+
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777888999999999888776
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=5.6e-07 Score=73.60 Aligned_cols=302 Identities=14% Similarity=0.023 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|++.-..+.|+.+|-...++..|.+.|+++- ...|.. .--.--...+.+.+.+.+|+.|.
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~-------------------ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLG-------------------QLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4577788999999999999999999999986 333443 22223345566777888888887
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
..|.... ..-..+...-....-..+++..+..+.++....| +..+.+.......+.|+++.|.+-|+...+-+--.
T Consensus 102 ~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 102 FLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 7665431 1111222222223335667777766666654322 44444555555667788888888887776653223
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-------------CC---------------HHHHHHHHHHHHhcCC
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-------------PD---------------VYTYSALINGLCKENR 214 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~---------------~~~~~~l~~~~~~~~~ 214 (464)
....|+..+ +..+.|+++.|++...++++.|++ || ...+|.-...+.+.|+
T Consensus 178 pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 178 PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN 256 (459)
T ss_pred chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence 344555444 444667788888887777765532 11 1123334445678899
Q ss_pred hhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH
Q 047873 215 LDDAELLLHEMCER-GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 215 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
++.|.+.+-+|.-+ ....|++|...+.-.-.. +++ .+..+-+.-+....+ -...||..++-.||++.-++.
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p------~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARP------TEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCc------cccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 99999999888644 233466666554332222 222 344445555555544 345788889999999999999
Q ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 294 ALDIRKEMIKRGIE-LDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 294 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
|-+++.+-...-.. .+...|+.+=....-.-..++|.+-+..+.
T Consensus 329 AADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 329 AADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88887653222111 133344433222223445666666555443
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=4.7e-06 Score=79.39 Aligned_cols=358 Identities=12% Similarity=0.124 Sum_probs=172.2
Q ss_pred ChHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHH
Q 047873 41 SSASLFASILETRGTH--LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGF 116 (464)
Q Consensus 41 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 116 (464)
..+.+..+++.. +.+ .|....+..+.++...+-..+-+++++++.-....-+ ...-+.++... -.-+..+..+.
T Consensus 965 ~rRqLiDqVv~t-al~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~Y 1042 (1666)
T KOG0985|consen 965 YRRQLIDQVVQT-ALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHHHHh-cCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHH
Confidence 344455555544 221 2224445555666666666666666666654321111 11112222222 22233444444
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047873 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196 (464)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 196 (464)
.+++-.... -.+...+...+-+++|..+|++.. .+....+.|+. ..++++.|.++-++..
T Consensus 1043 I~rLdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n----- 1102 (1666)
T KOG0985|consen 1043 INRLDNYDA-------PDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN----- 1102 (1666)
T ss_pred HHHhccCCc-------hhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-----
Confidence 444332211 123334445555556666555432 12222333322 2234444444444332
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH
Q 047873 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276 (464)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (464)
.+..|..+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.+ ++..+++.-..+....|.
T Consensus 1103 -~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~------edLv~yL~MaRkk~~E~~-- 1167 (1666)
T KOG0985|consen 1103 -EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKY------EDLVKYLLMARKKVREPY-- 1167 (1666)
T ss_pred -ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcH------HHHHHHHHHHHHhhcCcc--
Confidence 23345555555555555555555443321 445555555555555544 355555544444333332
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (464)
.=+.++-+|++.++..+.++++ ..|+......+..-|...+.++.|.-+|.. ..-|..|...+.
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLV 1231 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHH
Confidence 2234555555555555443332 123444555555555555555555544432 223455555666
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047873 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436 (464)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 436 (464)
..|+++.|...-+++ .+..+|..+..+|...+.+.-| +|-..++.....-+.-++.-|...|-+++.+.
T Consensus 1232 ~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 666666665544333 2455666666666655544433 22222333455566677777878888888877
Q ss_pred HHHh-cCCCC-chhHHHHhhccchhhhh
Q 047873 437 LQSE-KGLVS-DYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 437 ~~~~-~~~~p-~~~~~~~ll~~~~~~~~ 462 (464)
+++. +|+.- ....|+.|--.|+|+..
T Consensus 1301 l~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 7776 55533 34556666656666543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=4.5e-08 Score=82.62 Aligned_cols=186 Identities=8% Similarity=-0.116 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG----LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 79 (464)
+..+..+..++..+...|++++|+..|++++. ..|++ .++..++..+.+.|++++|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-------------------~~p~~~~~~~a~~~la~~~~~~~~~~~A~ 90 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALES-------------------RYPFSPYAEQAQLDLAYAYYKSGDYAEAI 90 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCchhHHHHHHHHHHHHHhcCCHHHHH
Confidence 45677888888889999999999999998873 23332 56777888889999999999
Q ss_pred HHHHHHHhCCCCCChh---cHHHHHHHHHcC--------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 80 QCFRLLRKHYFRIPAR---GCRCLIDRMMRT--------NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
..|+++.+.... +.. ++..+..++... |+++.|.+.++.+.+..+. +...+..+......
T Consensus 91 ~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~------- 161 (235)
T TIGR03302 91 AAADRFIRLHPN-HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYL------- 161 (235)
T ss_pred HHHHHHHHHCcC-CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHH-------
Confidence 999998876522 222 455555555544 6778888888888876543 33333222211110
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM--RPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
..... .....+...+.+.|++.+|...++...+... +.....+..+..++.+.|++++|..+++.+.
T Consensus 162 ---~~~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 162 ---RNRLA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred ---HHHHH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00000 0112456678899999999999999886521 2235678889999999999999999988887
Q ss_pred HC
Q 047873 227 ER 228 (464)
Q Consensus 227 ~~ 228 (464)
..
T Consensus 231 ~~ 232 (235)
T TIGR03302 231 AN 232 (235)
T ss_pred hh
Confidence 65
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=9.8e-08 Score=85.01 Aligned_cols=226 Identities=14% Similarity=0.003 Sum_probs=163.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
...-+.+.|+..+|.-.|+..+..+ |-+.++|..|+......++-..|+..+++.++..+. +..+...|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 3445778999999999999998887 557899999999999999999999999999998766 78888889989999999
Q ss_pred hhhHHHHHHHHhhCCCC--------CCcccHHHHHHHHHhcCChhHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhcCCh
Q 047873 145 IKDAQMVFDEFGKRGLH--------ATAVSFNTLINGHCKAKNLDEGFRLKSV-MEGSGMRPDVYTYSALINGLCKENRL 215 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 215 (464)
-..|++.++.......+ ++...-.. ..+.....+....++|-. ....+..+|+.....|.-.|.-.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999887654210 00000000 011111223344444433 34445456777788888888888999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 294 (464)
++|..+|+.++...+ -|...||.|...++...+. ++|+..|.+.++. .|+ +.+...|.-+|...|.+.+|
T Consensus 447 draiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s------~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRS------EEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCccc------HHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 999999998887643 2677888888888877766 5888888888874 454 33444466678888888888
Q ss_pred HHHHHHHHH
Q 047873 295 LDIRKEMIK 303 (464)
Q Consensus 295 ~~~~~~~~~ 303 (464)
...|-..+.
T Consensus 518 ~~hlL~AL~ 526 (579)
T KOG1125|consen 518 VKHLLEALS 526 (579)
T ss_pred HHHHHHHHH
Confidence 887765543
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=7.6e-06 Score=78.03 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
.+..+.|.+.-++.. .+..|+.+..+-.+.|...+|.+-|-+. .|+..|..+++...+.|.+++-.+.
T Consensus 1088 i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 455666666554432 4467888888888888888887766442 3667788888888888888888888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403 (464)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 403 (464)
+...++....|... ..++-+|++.++..+..+++
T Consensus 1156 L~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 77777765455443 36677777777777666554
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=3e-08 Score=84.91 Aligned_cols=254 Identities=15% Similarity=0.141 Sum_probs=138.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc
Q 047873 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (464)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.+.. .|.......+. .|.....
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la-~y~~~~~--- 80 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLA-EYLSSPS--- 80 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHH-HHHCTST---
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHH-HHHhCcc---
Confidence 3344567776665554 222211222334455667777777765433 3332222 34444443333 3333211
Q ss_pred ccCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 253 AGDMKEARKIVDEMCTNGLNP-DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
+-+.++.-++........+ +.........++...|+++.|++++... .+.......+..+.+.++++.|.+
T Consensus 81 --~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 81 --DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp --THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred --chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 1134444444433332222 2222233334455667788877776542 255666677778888888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..
T Consensus 153 ~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888887642 33 344444444432 23578888888887665 55677788888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhc-CCCCchh
Q 047873 408 DLGVVPDDITYNILLEGHCKHGNP-EDFDKLQSEK-GLVSDYA 448 (464)
Q Consensus 408 ~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~-~~~p~~~ 448 (464)
+.+ +-++.++.-++-.....|+. +.+.+++.++ ...|+..
T Consensus 229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 543 23566666677777777777 5566777663 3455543
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=7.3e-08 Score=82.52 Aligned_cols=251 Identities=18% Similarity=0.125 Sum_probs=127.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
+.-.|++..++.-.+ ........+......+.+++...|+++.++. ++.. +..|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~-~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKK-SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hhcc-CCChhHHHHHHHHHHHhCccchHHH
Confidence 344677777776655 3222212223444556667777777664432 2222 2244555554444444333344444
Q ss_pred HHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
..-+++........ +..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444333222121 2222222234455567777777766532 2455556667777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 228 RGLTPNDVIFTTLIDGHCK--NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
.+ .| .+...+..++.. .|. +.+++|..+|+++... ..++..+.+.+..++...|++++|..++.+....+
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~----e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGG----EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTT----TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 42 23 233333333322 111 1124777777776543 34566666666667777777777777776666554
Q ss_pred CCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHC
Q 047873 306 IELDNVAFTALISGFCRGGKV-VEAERMLREMLKV 339 (464)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 339 (464)
.. ++.++..++.+....|+. +.+.+.+.++...
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 43 555555666666666665 4555566665543
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.6e-07 Score=81.54 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=131.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
....+.+.|++.+|.-.|+...+.+ +.+...|..|......+++-..|+..+++..+.. +-+......|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 4455778899999999999988775 5578899999999999999999999999998774 3356777778888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc------ccccCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHh
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI------DMAGDMKEARKIVDEMCT-NGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 287 (464)
-.+|++.++.-+...++ |..+..+ ...++. .....+....++|-++.. .+..+|..+...|.-.|.-
T Consensus 369 q~~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-----YVHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHHHHHHHHHhCcc-----chhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 88999999887665321 1111100 000000 001112233333333322 2222344444445555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHH
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
.|++++|.+.|+.++...+. |..+||.|...++...+.++|+..|.++++. .|+ +.+...|.-+|...|.+.+|.+
T Consensus 443 s~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 55555555555555554332 4445555555555555555555555555543 233 2233344444555555555555
Q ss_pred HHHHHH
Q 047873 367 LLKEMR 372 (464)
Q Consensus 367 ~~~~~~ 372 (464)
.|-.++
T Consensus 520 hlL~AL 525 (579)
T KOG1125|consen 520 HLLEAL 525 (579)
T ss_pred HHHHHH
Confidence 544433
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=1.9e-05 Score=66.17 Aligned_cols=299 Identities=13% Similarity=0.062 Sum_probs=217.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY-VFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 138 (464)
.-...+...+...|++.+|+.-|....+.+ |.+-.++..-...|...|+..-|+.=+.++++.. ||-. +.-.-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchh
Confidence 556678888999999999999999988875 3344556666678889999999999999999854 4533 22334556
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCccc----------------HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVS----------------FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 202 (464)
+.+.|.+++|..=|+.+.+.. |+..+ ....+..+...|+...|+.....+.+.. +.+...+
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 889999999999999998763 32211 1223344566899999999999998765 4588888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh----H
Q 047873 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT----Y 278 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 278 (464)
..-..+|...|++..|+.-++...+..-. +...+.-+-..+...|+. +.++...++..+. .||... |
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~------~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA------ENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH------HHHHHHHHHHHcc--CcchhhHHHHH
Confidence 88899999999999999888887765333 455555566666676654 5777777777764 454322 2
Q ss_pred HHH---------HHHHHhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHh
Q 047873 279 TIL---------LDGFCKEGDLESALDIRKEMIKRGIELDNV---AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346 (464)
Q Consensus 279 ~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 346 (464)
..+ +......++|.++++-.+..++..+..... .+..+-.++...+++.+|+..-.+++... +.|..
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 223345677888888888888775542222 34455566777889999999999988764 33478
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
++.--..+|.-..+++.|+.-|+.+.+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888888998888899999999888875
No 106
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=2.8e-06 Score=73.86 Aligned_cols=220 Identities=8% Similarity=-0.051 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.++..+-..+...++.++|+.+.+++.... |-+..+|.....++...| .+++++..++++++..++ +..+|+....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 344444445566788899999999888875 445567777767777777 578899999998887765 66677766666
Q ss_pred HHhcCCh--hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---C
Q 047873 139 LCKEGKI--KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE---N 213 (464)
Q Consensus 139 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 213 (464)
+.+.|+. +++..+++.+.+.+ +.+..+|+...-++...|+++++++.++++++.+. .+..+|+....++.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 6666653 56788887877765 45677888888888888888999999988887763 3666777666555544 2
Q ss_pred Ch----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047873 214 RL----DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 214 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (464)
.. ++.++...+++...+ -+...|+.+...+...+.. .+...++...+.+....+ +.+......++..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~--l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEA--LVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcc--cccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 356666666666543 3667777777776653321 112235666666665543 2345566666666654
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=2.2e-07 Score=75.06 Aligned_cols=119 Identities=10% Similarity=0.029 Sum_probs=70.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhhH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL-CKEGK--IKDA 148 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 148 (464)
.++.++++..+++..+.+ |.+...|..+...+...|++++|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666655554 445566666666666666666666666666665544 555555555543 44455 3666
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
.+++++..+.+ +.+..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666553 234555666666666666666666666666554
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=7.7e-08 Score=73.51 Aligned_cols=93 Identities=19% Similarity=-0.026 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
.+...+...|++++|+..|+...... |.+...+..+..++...|++++|...|+++....+. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 44555566666666666666666554 345556666666666666666666666666665443 5566666666666666
Q ss_pred ChhhHHHHHHHHhhC
Q 047873 144 KIKDAQMVFDEFGKR 158 (464)
Q Consensus 144 ~~~~a~~~~~~~~~~ 158 (464)
++++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666554
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=5.4e-07 Score=76.05 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=119.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh---hH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY---VF 132 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 132 (464)
...+..++..+.+.|++++|+..|+++.... |.+ ..++..+..++...|++++|...++++++..+. +.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 3677788888999999999999999988765 222 246777888999999999999999999886654 222 45
Q ss_pred HHHHHHHHhc--------CChhhHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 047873 133 NVLMHKLCKE--------GKIKDAQMVFDEFGKRGLHATA-VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203 (464)
Q Consensus 133 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (464)
..+..++... |+++.|.+.|+.+... .|+. ..+..+..... . .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH--------HHHHH
Confidence 5555556554 6788888888888766 2332 22222211110 0 0000 01122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCcccc
Q 047873 204 ALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLIDGHCKNGRIDMA 253 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 253 (464)
.+...+.+.|++.+|+..++...+... +.....+..+..++...|+++.+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 566789999999999999999987632 12356788999999999998643
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=7e-07 Score=71.96 Aligned_cols=170 Identities=11% Similarity=-0.030 Sum_probs=141.8
Q ss_pred cCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 53 RGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 53 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
....|++ .+ ..+...+...|+-+.+..+........ +.+.......+......|++..|+..+.+.....+ +|..+
T Consensus 60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~ 136 (257)
T COG5010 60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEA 136 (257)
T ss_pred HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhh
Confidence 3566766 55 778888889999999999988765543 44555666788999999999999999999998765 49999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (464)
|+.+.-+|.+.|+++.|..-|.+..+.. .-+....+.+...+.-.|+++.|..++......+ .-|...-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhh
Confidence 9999999999999999999999988763 3466788999999999999999999999988765 3377777888999999
Q ss_pred cCChhHHHHHHHHHHH
Q 047873 212 ENRLDDAELLLHEMCE 227 (464)
Q Consensus 212 ~~~~~~a~~~~~~~~~ 227 (464)
.|++++|.++...-..
T Consensus 215 ~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 215 QGDFREAEDIAVQELL 230 (257)
T ss_pred cCChHHHHhhcccccc
Confidence 9999999998876543
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=1.2e-05 Score=74.32 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=66.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047873 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286 (464)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (464)
.+......|.+|+.+++.+.++.. ...-|..+...|...|++ +.|.++|.+.- .++-.|.+|.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df------e~ae~lf~e~~---------~~~dai~my~ 802 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF------EIAEELFTEAD---------LFKDAIDMYG 802 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH------HHHHHHHHhcc---------hhHHHHHHHh
Confidence 344556677777777777766532 233355556666666654 57777775431 2455677788
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047873 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334 (464)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (464)
+.|+|..|.++-.+.. |+......|.+-..-.-++|++.+|.+++-
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 8888888877765553 233344555555555566666666665553
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=1.8e-06 Score=83.77 Aligned_cols=235 Identities=12% Similarity=0.043 Sum_probs=159.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|.+..+|..|+..+...|++++|+++.+..+..++....-..+..++-....+.++.....++.......++.-...+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 46788999999999999999999999999886666555555555554443333444444466666666666633333333
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
.+... ..+..++..++.+|-+.|+.++|..+|+++++..+. |+.+.|.+...|+.. ++++|.+++.+....-+ +
T Consensus 108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~ 181 (906)
T PRK14720 108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K 181 (906)
T ss_pred HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence 44443 345568888999999999999999999999999865 899999999999999 99999999988876521 1
Q ss_pred cccHHHHHH---HHH--hcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047873 164 AVSFNTLIN---GHC--KAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 164 ~~~~~~l~~---~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
..-|+.+.. -++ ...+++.-..+.+.+... |...-..++..+-..|...++++++..++..+.+.... |....
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~ 260 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAR 260 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhH
Confidence 111111111 111 122333444444444433 22333445556667888889999999999999987543 55556
Q ss_pred HHHHHHHH
Q 047873 238 TTLIDGHC 245 (464)
Q Consensus 238 ~~l~~~~~ 245 (464)
.-++.+|.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 66666665
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=5.4e-06 Score=78.91 Aligned_cols=382 Identities=10% Similarity=-0.010 Sum_probs=227.0
Q ss_pred HHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-
Q 047873 49 ILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS- 126 (464)
Q Consensus 49 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 126 (464)
.+++....++- ..|..|...|...-+...|.+.|++.-+.+ +.+..+.......|.+..+++.|..+.-...+..+.
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 33333556665 889999999988889999999999998887 557888999999999999999999985544432211
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHH
Q 047873 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY-TYSAL 205 (464)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 205 (464)
.-...|..+.-.|.+.++...|..-|+...+.. +.|...|..+..+|.+.|.+..|.++|.+.... .|+.. .--..
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~ 636 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKE 636 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHH
Confidence 123344456667888899999999999888765 457888999999999999999999999988764 44432 22223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCccc-ccCHHHHHHHHHHHHhCCCCCCHHhH
Q 047873 206 INGLCKENRLDDAELLLHEMCERG------LTPNDVIFTTLIDGHCKNGRIDM-AGDMKEARKIVDEMCTNGLNPDKITY 278 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 278 (464)
.-.-+..|.+.+|...+....... ..--..++..+...+...|-... ..-++.+++.|.-...+....+...|
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 334567889999998888775431 11112223222222222221110 11134444444444433322233333
Q ss_pred HHHHHHHHhCCC--hHH----HHHH-HHHHHHcCCC--------------------CCHHHHHHHHHHHhc-------c-
Q 047873 279 TILLDGFCKEGD--LES----ALDI-RKEMIKRGIE--------------------LDNVAFTALISGFCR-------G- 323 (464)
Q Consensus 279 ~~l~~~~~~~~~--~~~----a~~~-~~~~~~~~~~--------------------~~~~~~~~l~~~~~~-------~- 323 (464)
..+..+|.-.-. ++. ...+ +.+....+.. .+...|..++..|.+ .
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcc
Confidence 333222211000 000 0011 1111111111 122333333333322 1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 403 (464)
.+...|...+++..+.. ..+..+|+.|.-. ...|.+.-|...|-+-+.. .+....+|..+...+.+..+++-|...|
T Consensus 797 ~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred hhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHH
Confidence 22345667777766653 2344555555444 5567777777777665554 2335667777888888888999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 404 DTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 404 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 439 (464)
.+.+.. .| |...|......-...|+.-+...++.
T Consensus 874 ~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 874 SSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred Hhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 888753 44 55556555444556666666555544
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=1.9e-07 Score=89.42 Aligned_cols=135 Identities=8% Similarity=-0.108 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
.+.++.++..|..+..+.|.+++|..+++.++ ...|+. .++..++..+.+.+++++|+..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~-------------------~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH-------------------QRFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-------------------hhCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 46778999999999999999999999999998 678888 8999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+++..... |-+......+..++.+.|++++|..+|++++..++. +..++..+..++.+.|+.++|...|+.....
T Consensus 143 ~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 143 IELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999886 556777888888999999999999999999985543 6889999999999999999999999998765
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=4.4e-07 Score=73.06 Aligned_cols=133 Identities=13% Similarity=-0.026 Sum_probs=116.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
+.+......++....+.|++.+|+.+|.+..... |++.+.|+.+..+|.+.|+++.|..-|.+.++..+. ++...+.+
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNl 174 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNL 174 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhH
Confidence 3444777788999999999999999999998886 778999999999999999999999999999997765 77888889
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.-.+.-.|+.+.|..++......+ .-+..+-+.+.......|+++.|.++...-.
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 989999999999999999987764 3477788889999999999999999876654
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=6.3e-06 Score=76.00 Aligned_cols=170 Identities=17% Similarity=0.177 Sum_probs=75.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 171 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.+....+.|.+|+.+++.+++.. .-..-|..+...|...|+++.|.++|-+.. .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 334444555555555555555432 222334455555555555555555554321 123344555555544
Q ss_pred ccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 047873 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330 (464)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (464)
++|.++-++.. |+......|.+-..-.-..|++.+|.+++-.+.. |+ ..+.+|-+.|..+..+
T Consensus 808 ------~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 808 ------EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMI 870 (1636)
T ss_pred ------HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHH
Confidence 35554443332 2222333344434444455555555554432211 12 1234455555555555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047873 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371 (464)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 371 (464)
.+..+-.- ..-..|...+..-|-..|+...|..-|-+.
T Consensus 871 rlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 871 RLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 44443211 111233344444455555555555544333
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=7.9e-06 Score=80.51 Aligned_cols=204 Identities=11% Similarity=0.051 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHA---TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
...|-..|......++.+.|.+++++.... ++.- -...|.++++.-..-|.-+...++|+++.+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 444555555555555555555555554432 1000 0123444444444444444455555554432 112233444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC-CHHhHHHHHH
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP-DKITYTILLD 283 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 283 (464)
|...|.+.+.+++|.++|+.|.+. +......|...+..+.+.+.. +.|..++.+..+.-+.- ........+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~------~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEA------EAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHH------HHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 555555555555555555555543 112344455555554444432 34445555544431110 1122223333
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC
Q 047873 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (464)
.-.+.|+.+.+..+|+..+...++ -...|+.++..-.++|+.+.+..+|+++...++.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 334455555555555555444322 3344555555555555555555555555544433
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=8.7e-06 Score=80.24 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=140.3
Q ss_pred hHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---hhcHHHHHHHHHcCCChhhHHHH
Q 047873 42 SASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH-YFRIP---ARGCRCLIDRMMRTNLPTVTLGF 116 (464)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 116 (464)
+..-|...+++ .|+. ..|...|....+.++.++|+++++++... +++-. ...|.+++.....-|.-+...++
T Consensus 1443 saeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 44445555543 3444 78888888888888888888888877654 21111 22455555555555666666667
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047873 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196 (464)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 196 (464)
|+++.+.. ..-..|..|...|.+.+.+++|.++|+.|.++ +.....+|...+..+.+..+-+.|..++.+..+. -
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 77766542 13345666777777777777777777777665 2245566777777777777767777777666654 2
Q ss_pred CC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 197 PD---VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 197 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
|. .......+..-.+.|+.+.+..+|+.....-++ -...|+..+..-.++++. ..+..+|++++..++.|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~------~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDI------KYVRDLFERVIELKLSI 1667 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCH------HHHHHHHHHHHhcCCCh
Confidence 22 122233344445667777777777666655322 455666666666666554 46666677666665554
Q ss_pred CH--HhHHHHHHHHHhCCChHHHH
Q 047873 274 DK--ITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 274 ~~--~~~~~l~~~~~~~~~~~~a~ 295 (464)
.. ..|...+..--+.|+-..+.
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhhHH
Confidence 32 23444444444444444333
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=3.5e-07 Score=69.88 Aligned_cols=123 Identities=5% Similarity=-0.264 Sum_probs=98.7
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 79 IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+|++..+.+ |+ .+......+...|++++|...|+.++...+. +...+..+..++...|++++|...|+.....
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566665553 22 3556778889999999999999999988765 8899999999999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047873 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (464)
+ +.+...+..+..++...|++++|...|+...+.. +.+...+.....+
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~ 135 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNA 135 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 5 5578889999999999999999999999998763 2244444444333
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.76 E-value=8.2e-06 Score=79.32 Aligned_cols=224 Identities=12% Similarity=0.047 Sum_probs=122.8
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC------
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS------ 126 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 126 (464)
...|+. .+|..|+..|...|++++|.++.+...... |-....|..++..+.+.++..++..+ .+...-..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 556666 999999999999999999999999776663 33345555555567777776665544 22221110
Q ss_pred ------------CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047873 127 ------------PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 127 ------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 194 (464)
-+..++..+..+|-+.|+.++|..+++++.+.+ +.|+.+.|.+...|... ++++|.+++.+....
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 011333444444444455555555555554443 23444444444444444 455554444443321
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCC
Q 047873 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNP 273 (464)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 273 (464)
+...+++..+.+++.++....+ + +++.-..+.+.+... +..-
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~~~--~---------------------d~d~f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHYNS--D---------------------DFDFFLRIERKVLGHREFTR 221 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhcCc--c---------------------cchHHHHHHHHHHhhhccch
Confidence 3333344444444444444311 1 112333333333332 1122
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
-..++..+-..|...++++++..++..+++.... +.....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2344555666777788888888888888887655 5555666666655
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=7.3e-07 Score=81.81 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=174.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 80 (464)
|++||---.-..+..++..-|....|+.+|++.- .|..++..|...|+..+|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle--------------------------mw~~vi~CY~~lg~~~kaee 445 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------------------------MWDPVILCYLLLGQHGKAEE 445 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------------------------HHHHHHHHHHHhcccchHHH
Confidence 4555655666778888999999999999999874 67788999999999999999
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+..+-.+. +|++..|..+++......-+++|.++.+.... .+-..+.....+.+++.++.+.|+.-.+.+
T Consensus 446 i~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n- 515 (777)
T KOG1128|consen 446 INRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN- 515 (777)
T ss_pred HHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-
Confidence 88877774 67888888888888777777888887776533 222333333445789999999998876654
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
+....+|-.+..+..+.++++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|..-
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENy 593 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENY 593 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeech
Confidence 4467788888888889999999999999887652 3356789999999999999999999999999886 3355666666
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
+-...+.|.+ ++|++.+.++...
T Consensus 594 mlvsvdvge~------eda~~A~~rll~~ 616 (777)
T KOG1128|consen 594 MLVSVDVGEF------EDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhcccH------HHHHHHHHHHHHh
Confidence 6666676665 6888888888653
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=2.2e-06 Score=78.76 Aligned_cols=223 Identities=13% Similarity=0.030 Sum_probs=142.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+.+|--..-..+...+...|-...|+.+|+++ ..|..++.+|+..|+..+|..+..+-++ -+|++..|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 44444466667777777778778888877754 3455567777777777777777776666 346777777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (464)
.+.......--+++|.++.+....+ .-..+.....+.++++++.+.++.-.+.. +....+|-....+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 7777766666677777777654332 11112222234677777777777665543 335556666777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH
Q 047873 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
++..|.+.|.......+ -+...|+.+-.+|.+.++. .+|...+++..+.+.. +-..|...+....+.|.+++
T Consensus 534 k~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k------~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKK------KRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred hhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhh------HHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHH
Confidence 77777777777665432 2466677777777777665 4777777777766532 33344445555667777777
Q ss_pred HHHHHHHHHH
Q 047873 294 ALDIRKEMIK 303 (464)
Q Consensus 294 a~~~~~~~~~ 303 (464)
|++.+.++..
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.2e-05 Score=63.58 Aligned_cols=140 Identities=20% Similarity=0.220 Sum_probs=68.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----c
Q 047873 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----N 358 (464)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 358 (464)
..|+..+++++|++...... +......=+..+.+..+.+-|...+++|.+. .+..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555544311 1122222233344555555555555555542 234445545544433 2
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
+.+..|.-+|+++.++ ..|++.+.+....++...|++++|..+++..+... ..++.++.-++-.-...|+..+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChH
Confidence 2355555555555554 44555555555555555666666666665555432 2244444444444444444433
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=1.1e-05 Score=77.57 Aligned_cols=230 Identities=9% Similarity=0.054 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhCCChHHHH-HH---HHHHHHhcC-CCChHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQAR-DL---LHLIVSKKG-MGSSASLFASILET-RGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~-~~---~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
....+=..++.-|..++|- ++ .++++...+ .+....-+..+..- ..-+.+...+..|..+..+.|.+++|+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l 109 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVW 109 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3444555666777776663 22 333333322 22222222222221 233444588888999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+.+.+.. |-+..++..++..+.+.+++++|+..+++.+...+. +......+..++...|++++|..+|+++...+ +-
T Consensus 110 ~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~ 186 (694)
T PRK15179 110 RGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PE 186 (694)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CC
Confidence 9998885 445677888888999999999999999999987765 77888888889999999999999999998753 34
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG----LTPNDVIFT 238 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 238 (464)
+..++..+...+...|+.++|...|+...+.- .+....|+..+ +++..-..+++.+.-.+ .+....+..
T Consensus 187 ~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (694)
T PRK15179 187 FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLE 259 (694)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHH
Confidence 57888888889999999999999999887652 34445555433 23344455666654332 223344455
Q ss_pred HHHHHHHhcC
Q 047873 239 TLIDGHCKNG 248 (464)
Q Consensus 239 ~l~~~~~~~~ 248 (464)
.+|..+....
T Consensus 260 ~~~~~~~~~~ 269 (694)
T PRK15179 260 KMLQEIGRRR 269 (694)
T ss_pred HHHHHHhhcC
Confidence 5565555443
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=9.1e-07 Score=71.56 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=119.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+..|...|+++......+.+... .. .+...++.+++...++..++..+. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 44688889988876555332211 00 122356778888888888887765 889999999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHH-HhcCC--hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGH-CKAKN--LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
+.|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988874 44677777777764 56676 589999999998875 336778888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q 047873 223 HEMCERGLTPNDVIFTTLIDG 243 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~ 243 (464)
+++.+.. +|+..-+. +|..
T Consensus 168 ~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 168 QKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHhhC-CCCccHHH-HHHH
Confidence 9998874 33444443 3343
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=1.2e-06 Score=66.66 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=83.0
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
..+|++ .....++..+.+.|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.++. +...+
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 88 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPY 88 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHH
Confidence 445555 667777778888888888888888887765 446677788888888888888888888888776543 66777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccH
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 167 (464)
..+..++...|+++.|.+.|+...+. .|+...+
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 77778888888888888888887775 3444443
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=3.7e-05 Score=61.78 Aligned_cols=192 Identities=13% Similarity=0.081 Sum_probs=147.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcH
Q 047873 20 HKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97 (464)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 97 (464)
..+.++..+++..++..... + ..++. .++..++-+....|+.+.|..+++.+...- |.+..+-
T Consensus 25 ~rnseevv~l~~~~~~~~k~--------------~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~ 89 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKS--------------GALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVG 89 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhh--------------cccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHH
Confidence 45667777777777643221 3 55566 788888888999999999999999988774 5455554
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (464)
..-...+-..|++++|.++|+.+++.++. |..++-.=+.+.-..|+.-+|++-+....+. +..|...|.-+...|...
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence 44444556679999999999999998754 7777777677777788888999988888776 466899999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 047873 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN---RLDDAELLLHEMCERG 229 (464)
Q Consensus 178 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 229 (464)
|++++|.-.++++.-.. +.++..+..+...+.-.| +...+.++|.+..+..
T Consensus 168 ~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred hHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 99999999999998663 345555666666655544 4567889999988863
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=0.00014 Score=68.26 Aligned_cols=367 Identities=13% Similarity=0.126 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+-..|..|.+.+.+-.+++-|.-.+..|-..+|. ..++...-.++ ..-..+...-...|..++|+.+|.+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga--------RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~c 826 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA--------RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQC 826 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH--------HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 4457888888899888888888888777644332 12222122222 33334444556789999999999987
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC------
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG------ 159 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 159 (464)
.+.+ .+=..|...|.+++|.++-+.--+.. -..+|......+...++.+.|++.|++.....
T Consensus 827 kR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 827 KRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred HHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 6653 23345667899999998876533321 23456666677777888888888877542110
Q ss_pred -------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 160 -------------LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 160 -------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
-..|...|......+-..|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++-.
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg 965 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG 965 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc
Confidence 012334444445555556666666666655542 3445556666677777766655432
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChH--------------
Q 047873 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE-------------- 292 (464)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------- 292 (464)
|......+.+.|...|++ .+|...|.+... +...|+.|-. ++++
T Consensus 966 ------d~AAcYhlaR~YEn~g~v------~~Av~FfTrAqa---------fsnAIRlcKE-nd~~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 966 ------DKAACYHLARMYENDGDV------VKAVKFFTRAQA---------FSNAIRLCKE-NDMKDRLANLALMSGGSD 1023 (1416)
T ss_pred ------cHHHHHHHHHHhhhhHHH------HHHHHHHHHHHH---------HHHHHHHHHh-cCHHHHHHHHHhhcCchh
Confidence 434444566666665544 577777766542 3333333222 2222
Q ss_pred --HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH--------HHHC--CCCCCHhhHHHHHHHHHhcCC
Q 047873 293 --SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE--------MLKV--GLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 293 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~ll~~~~~~~~ 360 (464)
.|-++|++. | .-+...+..|.+.|.+.+|+++-=+ +... ....|+...+.-...+....+
T Consensus 1024 ~v~aArYyEe~---g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEEL---G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHc---c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 122222221 1 1122233445666666666554221 1111 122355566666666677777
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML-DLGVVPDD----ITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~----~~~~~l~~~~~~~g~~~~a~ 435 (464)
+++|..++-..++ |...+..|... +..-..++-+.|. ...-.|+. ..+..+...|.++|.+..|-
T Consensus 1096 yekAV~lL~~ar~---------~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1096 YEKAVNLLCLARE---------FSGALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 7777777665554 22333333332 2222333333343 11123333 35666777888999988877
Q ss_pred HHHHhcC
Q 047873 436 KLQSEKG 442 (464)
Q Consensus 436 ~~~~~~~ 442 (464)
+-+.+.|
T Consensus 1166 KKfTQAG 1172 (1416)
T KOG3617|consen 1166 KKFTQAG 1172 (1416)
T ss_pred HHHhhhh
Confidence 7665533
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.4e-05 Score=63.37 Aligned_cols=262 Identities=16% Similarity=0.120 Sum_probs=143.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 57 LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
|++..|+.-= +.-.|++..++..-+...... .+...-..+.++|...|++.....-. .. +..|.......+.
T Consensus 8 ~~d~LF~iRn--~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFNIRN--YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLA 79 (299)
T ss_pred cchhHHHHHH--HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHH
Confidence 3344444322 334588877777666544331 23344445556666677665443221 11 1122333333333
Q ss_pred HHHHhcCChhhH-HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 047873 137 HKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215 (464)
Q Consensus 137 ~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 215 (464)
.....-++.+.- -++.+.+.......+......-...|++.+++++|++...... +......=..++.+..++
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 222223333332 2334444433222222333334456778888888888776622 222333334556677778
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+.|.+.+++|.+.. +..+.+.|..++.+.-.- .+.+.+|.-+|+++-+. .+|+..+.+.+..++...+++++|.
T Consensus 154 d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g--gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 154 DLAEKELKKMQQID---EDATLTQLAQAWVKLATG--GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence 88888888887652 556666666666543211 12356777888887664 4567777777777777778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHC
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVE-AERMLREMLKV 339 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 339 (464)
.+++..+..... ++.+...++..-...|...+ ..+.+.++...
T Consensus 228 ~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 228 SLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 888877777655 56666666655555554433 34455555443
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=6.3e-08 Score=52.52 Aligned_cols=32 Identities=53% Similarity=0.919 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
|+.||..||+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=6.5e-08 Score=52.48 Aligned_cols=32 Identities=47% Similarity=0.820 Sum_probs=17.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047873 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 406 (464)
|+.||..+|++++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555554
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=6.8e-06 Score=72.32 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+.-....+...|++++|+..++.+.... |-++..+......+.+.|+.++|.+.+++++...+. .....-.+..++.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHH
Confidence 33344445567788888888888877663 445555566677788888888888888888876543 3666667778888
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
+.|++.+|.++++...... +.|+..|..|.++|...|+..++.....+.. ...|+++.|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHH
Confidence 8888888888888877664 5577888888888888888887777666653 23466777777
Q ss_pred HHHHHHHC
Q 047873 221 LLHEMCER 228 (464)
Q Consensus 221 ~~~~~~~~ 228 (464)
.+....+.
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 66666554
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=1.6e-06 Score=66.00 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+......++..+...|++++|...|+.++. ..|++ ..+..+...+...|++++|..+|
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999983 34444 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
+.....+ +.+...+..+...+...|++++|...++...+..+
T Consensus 75 ~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 75 ALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9988876 55677888889999999999999999999998653
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.50 E-value=0.0013 Score=62.83 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 047873 312 AFTALISGFCRGGKVV---EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (464)
+.+.++..+.+.++.. +|+.+++...... +.|..+-..+++.|+-.|-+..|.++|..+.-..++.|...|- +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 3456778888887654 5666666666654 4566677788889998999999999988876555554433322 222
Q ss_pred HHHhcCCHHHHHHHHHH
Q 047873 389 GLCKHGQLKNANMLLDT 405 (464)
Q Consensus 389 ~~~~~g~~~~a~~~~~~ 405 (464)
-+...|++..+...++.
T Consensus 516 ~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHhcccchhHHHHHHH
Confidence 33344444444444443
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.0011 Score=59.62 Aligned_cols=361 Identities=12% Similarity=0.117 Sum_probs=180.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------------------cCCCC----hHHHHHHHHHhcCCCCCh-
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSK------------------KGMGS----SASLFASILETRGTHLPG- 59 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~----~~~~~~~~~~~~~~~~~~- 59 (464)
||.+..+|..-|..-.+..+++...++|.+++.+ ++... -...|.-++...|+++-.
T Consensus 49 FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~ 128 (656)
T KOG1914|consen 49 FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSY 128 (656)
T ss_pred CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccc
Confidence 6888999999999999999999999999998731 11112 223444455556777666
Q ss_pred hhHHHHHHH---------HHhcCChhHHHHHHHHHHhCCCCCChhcHH------HHHHH-----H--HcCCChhhHHHHH
Q 047873 60 LVLDALMIV---------YVDLGFLDDAIQCFRLLRKHYFRIPARGCR------CLIDR-----M--MRTNLPTVTLGFY 117 (464)
Q Consensus 60 ~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~l~~~-----~--~~~~~~~~a~~~~ 117 (464)
.+|+..+.. |..+.+.+..+++++++.......-...|+ .-+.. + -+...+..|.+++
T Consensus 129 siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~ 208 (656)
T KOG1914|consen 129 SIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVY 208 (656)
T ss_pred hhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 777776664 333445566666777766542211112221 11111 1 1234455566666
Q ss_pred HHHHh--cCCCCChh------h---------HHHHHHHHHhcCChh---------hHHHHHHHHh-hCCCCCCcccHHHH
Q 047873 118 LEILD--YGYSPSVY------V---------FNVLMHKLCKEGKIK---------DAQMVFDEFG-KRGLHATAVSFNTL 170 (464)
Q Consensus 118 ~~~~~--~~~~~~~~------~---------~~~l~~~~~~~~~~~---------~a~~~~~~~~-~~~~~~~~~~~~~l 170 (464)
+++.. .|...... | |..+|.. -+.+-.. ...-++++.. -.+..|+ +|---
T Consensus 209 qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~ 285 (656)
T KOG1914|consen 209 QELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDY 285 (656)
T ss_pred HHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 65432 22211111 1 2222211 1111110 0111111111 1111111 11111
Q ss_pred -------HHHHHhcCC-------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCC
Q 047873 171 -------INGHCKAKN-------LDEGFRLKSVMEGSGMRPDVYTYSALINGLC---KENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 171 -------~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
-+.+...|+ -+++..+++..+..-..-+..+|..+...-- .-+..+.....++++......--
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~ 365 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL 365 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC
Confidence 112222232 2333444444433211222222222222111 11124445555555554321112
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP-DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (464)
..+|...++...+..- +..|..+|.+..+.+..+ ++.+.++++..+|. ++..-|.++|+--++.- .-++..
T Consensus 366 tLv~~~~mn~irR~eG------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~y 437 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEG------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEY 437 (656)
T ss_pred ceehhHHHHHHHHhhh------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHH
Confidence 3345555554444332 357777777777766555 55566666665543 66777777777666552 224444
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDD--ATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
....+..+...++-..+..+|++....++.++. ..|..++..-+.-|+...+.++-+++...
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 555666666777777777777777766544443 56777777777777777777766665543
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00038 Score=56.22 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhC---C-CCCCHH-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 047873 256 MKEARKIVDEMCTN---G-LNPDKI-TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330 (464)
Q Consensus 256 ~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (464)
.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+.++- +-+...-..-...+-..|++++|.
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHH
Confidence 35667776666542 2 334443 35556667778899999999999988875 224444444444566789999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047873 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 410 (464)
++++.+.+.+ +.|..++-.-+-..-..|..-+|++-+....+. +..|...|.-+...|...|+++.|.-.+++++-.
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 9999999876 556667766666667778877888888888876 6779999999999999999999999999998853
Q ss_pred CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHh-cCCCC
Q 047873 411 VVP-DDITYNILLEGHCKHG---NPEDFDKLQSE-KGLVS 445 (464)
Q Consensus 411 ~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~-~~~~p 445 (464)
.| ++..+..+...+...| +.+-+.+++++ +.+.|
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 45 6666677777766555 44458888876 66666
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00028 Score=62.52 Aligned_cols=128 Identities=12% Similarity=-0.011 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC-cccHHHHHHHHH
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHC 175 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 175 (464)
...........|++++|+..++.++..-+. |++.+......+.+.|+.++|.+.++++... .|+ ....-.+..++.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 333334455677888888888887776543 7777777778888888888888888888776 344 555666777888
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+.|++.+|..+++...... +-|+..|..|.++|...|+..++.....+....
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 8888888888887777654 457778888888888888888877777666544
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=2.2e-05 Score=60.34 Aligned_cols=116 Identities=15% Similarity=0.027 Sum_probs=69.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCh
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 145 (464)
..++...+...++.+.... +.+ ..+...+...+...|++++|...|+.+......+. ......+..++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3677777777777776654 222 22334455666677777777777777776553322 22344456667777777
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 189 (464)
++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777654332 22334455566666667777776666654
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=3.2e-05 Score=59.40 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
..|..++..+ ..|+...+.+.++.+....+ +.+....+...+...+...|++++|...|+.+..
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455666655 48888888888888875322 1111125556677889999999999999999998
Q ss_pred CCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 88 HYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 88 ~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
....++ ..+...+...+...|++++|+..++..... ...+..+.....++.+.|++++|...|+..
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 752222 235667888999999999999999774332 235667788899999999999999999864
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.32 E-value=3e-05 Score=57.45 Aligned_cols=103 Identities=13% Similarity=0.014 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
.++..++..+...|++++|++.|..++...+ +.+....++..+..++.+.|++++|++.|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP---------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4566777777888888888888888774211 1111124566677778888888888888887776
Q ss_pred CCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 88 HYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 88 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
.... ....++..+..++.+.|++++|...++++.+..+
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 5311 1234566666777777777888777777777654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=5.7e-05 Score=67.23 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (464)
.....++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+. .+-+...+..-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 344445555555666666666666666542 33 3334555555566666666666666654 222455555555666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047873 391 CKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQSEK 441 (464)
Q Consensus 391 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 441 (464)
.+.++++.|+++.+++.+. .| +..+|..|..+|...|+++.|+..++.+
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666653 34 4446666666666666766666666653
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=5.4e-05 Score=67.38 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (464)
...++..+...++++.|..+++++.+.. | .....++..+...++..+|.+++.+..+.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4556666667778888888888888774 2 344456777777778888888888887653 3456666666777888
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.++++.|+.+.+++.+. .+-+..+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888875 22245578888888888888888888877653
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.27 E-value=1.7e-05 Score=59.61 Aligned_cols=100 Identities=8% Similarity=-0.137 Sum_probs=85.1
Q ss_pred CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 57 LPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 57 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
++. ...-.+...+...|++++|..+|+.+...+ +.+...|..|..++...|++++|+..|.......+. |+..+-.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 444 566667777888999999999999988887 557778888999999999999999999999988865 88888889
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|+.+.|.+.|+.....
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999987765
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.26 E-value=1.4e-05 Score=56.45 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
+|..++..+...|++++|++.+++++. ..|+. .++..+...+...|++++|.+.|+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE-------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh-------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666667777777777776662 22333 5566666666666777777777766655
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
.. +.+...+..+...+...|+++.|...+....+
T Consensus 63 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 63 LD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred CC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 54 22334555555566666666666666665554
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.25 E-value=2.8e-05 Score=69.40 Aligned_cols=102 Identities=8% Similarity=-0.098 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
...+..+...|++++|++.|++++ ...|+. ..+..+..+|.+.|++++|+..++++....
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al-------------------~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAI-------------------DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345667788999999999999998 445555 888889999999999999999999998886
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+.+..+|..++.++...|++++|+..|+++++..+. +..+..
T Consensus 67 -P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~-~~~~~~ 108 (356)
T PLN03088 67 -PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG-DSRFTK 108 (356)
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 456778888899999999999999999999986644 444433
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=2.7e-05 Score=58.60 Aligned_cols=98 Identities=6% Similarity=-0.109 Sum_probs=86.1
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (464)
-+....+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|......+ +.++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 345566777788999999999999999987765 77788889999999999999999999998876 4578899999999
Q ss_pred HHhcCChhHHHHHHHHHhhC
Q 047873 174 HCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 174 ~~~~~~~~~a~~~~~~~~~~ 193 (464)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=3.4e-05 Score=63.81 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=66.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
..=++-+.+.++|.+|+..|.+++ ...|++ ..|..-..+|.+.|.++.|++-.+.....+
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI-------------------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAI-------------------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH-------------------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 334455666777777777777777 566666 666667777777777777777777777765
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
+....+|..|..+|...|++++|++.|++.++..
T Consensus 146 -p~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 146 -PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred -hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 3345677777777777777777777777777644
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.21 E-value=0.0064 Score=58.27 Aligned_cols=225 Identities=13% Similarity=0.023 Sum_probs=141.9
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
...+++.+|++...+++.+. |+. .+...-.-.+.+.|+.++|..+++.....+. .|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~-------------------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~t 79 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH-------------------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLT 79 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC-------------------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHH
Confidence 35788888888888888543 332 2222222336789999999999988777653 37788
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
...+-.+|...++.++|..+|++..... |+......+..+|.+.+++.+-.++--++-+. ++-+...+=.+++....
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 8888899999999999999999998754 56777788888999988887654444333332 23344444455554443
Q ss_pred cC-C---------hhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHH
Q 047873 177 AK-N---------LDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLH-EMCERGLTPNDVIFTTLIDGH 244 (464)
Q Consensus 177 ~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~ 244 (464)
.. . ..-|.+..+.+.+.+ ...+..-...-...+-..|++++|..++. ...+.-...+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 21 1 223455555555443 11122222333344556788999998883 344433333444445566666
Q ss_pred HhcCCcccccCHHHHHHHHHHHHhCCC
Q 047873 245 CKNGRIDMAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 245 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (464)
...+++ .+..++-.++...+.
T Consensus 237 k~l~~w------~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 237 KLLNRW------QELFELSSRLLEKGN 257 (932)
T ss_pred HHhcCh------HHHHHHHHHHHHhCC
Confidence 666665 466777777666643
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.19 E-value=0.00034 Score=58.68 Aligned_cols=56 Identities=7% Similarity=-0.094 Sum_probs=32.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGS--GMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
+...|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344566666776676666666654 12223344455666676777777666655544
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=5.1e-06 Score=45.84 Aligned_cols=33 Identities=48% Similarity=0.935 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 414 (464)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888887777776
No 151
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=0.0001 Score=58.40 Aligned_cols=94 Identities=13% Similarity=0.003 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI--PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
..+..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++.++..+. ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 555666666666777777777777765543111 1235666666777777777777777776664332 3444445555
Q ss_pred HHH-------hcCChhhHHHHHHH
Q 047873 138 KLC-------KEGKIKDAQMVFDE 154 (464)
Q Consensus 138 ~~~-------~~~~~~~a~~~~~~ 154 (464)
.+. ..|+++.|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 555 66676655444443
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=7.2e-06 Score=44.83 Aligned_cols=33 Identities=42% Similarity=0.601 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047873 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413 (464)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 413 (464)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=4e-06 Score=57.47 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHH
Q 047873 20 HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC 99 (464)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 99 (464)
+|++++|+.+|++++... ...++...+..++.+|.+.|++++|+.++++ ...+ +.+......
T Consensus 2 ~~~y~~Ai~~~~k~~~~~----------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD----------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH----------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC----------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHH
Confidence 577888888888877431 1011335556677888888888888888877 3222 122344445
Q ss_pred HHHHHHcCCChhhHHHHHHH
Q 047873 100 LIDRMMRTNLPTVTLGFYLE 119 (464)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~ 119 (464)
+..++.+.|++++|+..+++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhc
Confidence 56777778888888777765
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=6.9e-05 Score=64.49 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR-GGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (464)
+|..+++..-+.+..+.|..+|.++.+.+. .+..+|......-.+ .++.+.|..+|+...+. ++.+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 566666666666667777777777764322 233444444444223 45555577777776654 344556666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 356 CKNGDTKTGFRLLKEMRSDGHLPA---VETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.+.++.+.|..+|++.+.. +.++ ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777776665 2222 23666666666667777777777666665
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=0.00013 Score=53.86 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLM 136 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 136 (464)
++..++..+.+.|++++|++.|+.+...... .....+..+..++.+.|+++.|...++.+....+.. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666777888888888888887765311 113456667777888888888888888877654331 244566677
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.++...|++++|.+.++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777788888888888777766
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=6e-05 Score=53.05 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
+..++..+...|++++|+.+|+.+.+.. +.+...+..+...+...+++++|.+.++...+..+. +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456666777778888888887776654 333455666667777777777777777777665543 44566666667777
Q ss_pred cCChhhHHHHHHHHhh
Q 047873 142 EGKIKDAQMVFDEFGK 157 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~ 157 (464)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
No 157
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.07 E-value=0.00012 Score=65.53 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=74.8
Q ss_pred CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhH
Q 047873 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR--GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 348 (464)
.+.+......++..+....+.+.+..++.+.... ....-+.+..++++.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555666666666666666666666666544 22222344556666666777667777666666666666677777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (464)
+.|+..+.+.|++..|.++...|...+...++.++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777666666666655445555555555555444
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00016 Score=57.45 Aligned_cols=112 Identities=10% Similarity=-0.054 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
+..++..+...|++++|+..|++.......++ ...+..++..+.+.|++++|...++++++..+. +...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33344444444444444444444433221111 123344444444444444444444444443222 233333334444
Q ss_pred HhcCC--------------hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 140 CKEGK--------------IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 140 ~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
...|+ +++|.+++++.... ++..+..++..+...|
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTG 165 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcC
Confidence 44333 45667777766654 2223555555554444
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.06 E-value=0.00027 Score=51.38 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
+.-+..++-..|+.++|+.+|++.+.. |...+. ..+..+...+...|++++|+.+|+....
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----------------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-----------------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666778888888888877743 222222 5566677777777888888888777765
Q ss_pred CCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 88 HYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 88 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
..+. .+......+..++...|+.++|+.++-..+. ++...|..-|..|.
T Consensus 67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5211 1222333334456667777777777666554 23334544444443
No 160
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=0.00011 Score=65.78 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=86.2
Q ss_pred cCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 254 GDMKEARKIVDEMCTN--GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 254 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
.+++.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++.++..+.+.|++..|..
T Consensus 80 ~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 80 DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHH
Confidence 3566777777777664 12122345679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
+...|...+...+..|+...+.+|.+-
T Consensus 160 V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 160 VATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999998877667777777777777655
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=1.8e-05 Score=51.88 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC-ChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG-FLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-~~~~A~~~~~ 83 (464)
++..|..++..+...|++++|+..|.+++ ...|+. .+|..+..+|...| ++++|++.|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai-------------------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI-------------------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH-------------------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 56788888888999999999999998888 345666 88888888888888 6888888888
Q ss_pred HHHhC
Q 047873 84 LLRKH 88 (464)
Q Consensus 84 ~~~~~ 88 (464)
+..+.
T Consensus 63 ~al~l 67 (69)
T PF13414_consen 63 KALKL 67 (69)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87665
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.01 E-value=0.00074 Score=58.48 Aligned_cols=204 Identities=13% Similarity=0.140 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...|..-...|-..|++++|.+.|.++..- + ...+.+.+. ..|......|.+. ++++|++.+++.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~---------~----~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A 100 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADC---------Y----EKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHH---------H----HHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH---------H----HHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 345677777888888888888888877521 1 110111122 5555666666554 888888888776
Q ss_pred Hh----CCCCCC--hhcHHHHHHHHHcC-CChhhHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhcCChhhHHHHHH
Q 047873 86 RK----HYFRIP--ARGCRCLIDRMMRT-NLPTVTLGFYLEILDY----GYS-PSVYVFNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 86 ~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
.. .| .++ ...+..+...|... |++++|++.|++..+. +.. .-...+..+...+.+.|++++|.++|+
T Consensus 101 ~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 101 IEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 53 23 222 34566777777777 8888888888887653 210 113345667778888889999999988
Q ss_pred HHhhCCCCCCc-----c-cHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHhcCC---hhHHHH
Q 047873 154 EFGKRGLHATA-----V-SFNTLINGHCKAKNLDEGFRLKSVMEGSG--MRPD--VYTYSALINGLCKENR---LDDAEL 220 (464)
Q Consensus 154 ~~~~~~~~~~~-----~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~---~~~a~~ 220 (464)
++.......+. . .+-..+-++...||...|...++...... +..+ ......|+.++- .|+ ++.+..
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~ 258 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVA 258 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCH
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 87664322111 1 12233445566788888888888877542 2211 233444555543 333 444444
Q ss_pred HHHHHH
Q 047873 221 LLHEMC 226 (464)
Q Consensus 221 ~~~~~~ 226 (464)
-|+.+.
T Consensus 259 ~~d~~~ 264 (282)
T PF14938_consen 259 EYDSIS 264 (282)
T ss_dssp HHTTSS
T ss_pred HHcccC
Confidence 444443
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00013 Score=60.79 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC---CChhhHHHHHHHHHhcCCCCChhh
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT---NLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
+|++ ..|..|...|.+.|+++.|...|.+..+.. +.++..+..+..++... ....++..+++++++..+. |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 4444 888888888888888888888888888875 55667777776665543 2345778888888887665 7778
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (464)
...|...+...|++.+|...++.|.+.. |....+..++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 8888888888888988888888888763 344455555543
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=4.3e-05 Score=49.31 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=42.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
++..+.+.|++++|++.|++++ ...|+. .++..+..++...|++++|+.+|+.+.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l-------------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL-------------------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH-------------------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566777888888888888887 445655 777888888888888888888888776653
No 165
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=1.2e-05 Score=44.29 Aligned_cols=33 Identities=52% Similarity=0.977 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.00014 Score=62.56 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHH-HHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR-MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+|..+++...+.+..+.|+.+|.+..+.+ ..+...|...... +.-.++.+.|..+|+..++.-. .+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 468888888888889999999999998553 3455566655555 3336777779999999887643 478888888899
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHAT---AVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+...|+.+.|..+|++.... +.++ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998765 2222 236777788777888888888888777654
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0056 Score=53.34 Aligned_cols=88 Identities=14% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCC
Q 047873 285 FCKEGDLESALDIRKEMIKRG---IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGD 360 (464)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 360 (464)
..+.|++..|.+.+.+.+..+ ..++...|.....+..+.|+..+|+.--+...+.+ +. ...|..-..++.-.++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHH
Confidence 346677777777777666542 23445556666666667777777776666665531 11 1122223334455566
Q ss_pred hHHHHHHHHHHHhC
Q 047873 361 TKTGFRLLKEMRSD 374 (464)
Q Consensus 361 ~~~a~~~~~~~~~~ 374 (464)
|++|.+-|+...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777766666654
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=0.0002 Score=64.02 Aligned_cols=91 Identities=7% Similarity=-0.171 Sum_probs=72.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+..+...|++++|++.|++..+.+ +.+...+..+..++...|++++|+..+++++...+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 445667788888888888888876 446677778888888888888888888888887654 677788888888888888
Q ss_pred hhHHHHHHHHhhC
Q 047873 146 KDAQMVFDEFGKR 158 (464)
Q Consensus 146 ~~a~~~~~~~~~~ 158 (464)
++|...|+...+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888775
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.97 E-value=0.0004 Score=55.14 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=89.6
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
...+..++..+...|++++|...|+++++....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 45677788888999999999999999987654432 4678889999999999999999999988763 33456677777
Q ss_pred HHHHhcCC--------------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 172 NGHCKAKN--------------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 172 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
..+...|+ +++|.+.++..... .|+ .|..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 78877776 68899999998864 233 36666766666554
No 170
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.8e-05 Score=43.22 Aligned_cols=32 Identities=41% Similarity=0.587 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERGLTP 232 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 232 (464)
+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 171
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0028 Score=51.64 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=104.9
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH----
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI---- 171 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 171 (464)
...+++..+...|.+.-..+++.++++..++.++.....|++.-...||.+.|...|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456677777889999999999999998878899999999999999999999999999887654345555555443
Q ss_pred -HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 172 -NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 172 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
..|.-.+++.+|...+.++...+ +.++...|.-.-+..-.|+...|++.++.+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556788999999999888764 3456666655555556789999999999999873
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0011 Score=55.35 Aligned_cols=117 Identities=12% Similarity=0.004 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhhHHHH
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG---KIKDAQMV 151 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 151 (464)
.++...-++.-.+.+ |-|.+.|..|...|...|++..|...|.+..+...+ ++..+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444445555555 668899999999999999999999999999987654 7888877777765543 45678999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 194 (464)
|+++...+ +.+..+...+...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999875 4467777888889999999999999999999874
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00011 Score=60.80 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=76.8
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHH
Q 047873 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLK 397 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 397 (464)
-+.+.+++.+|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+..+.. .| ...+|..|..+|...|++.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3566788888888888888875 456777788888888888888888888887774 23 3567888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047873 398 NANMLLDTMLDLGVVPDDITYNILLEG 424 (464)
Q Consensus 398 ~a~~~~~~~~~~~~~p~~~~~~~l~~~ 424 (464)
+|++.|++.++ +.|+..+|..=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 88888888875 57777666554443
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.91 E-value=0.00027 Score=49.36 Aligned_cols=78 Identities=29% Similarity=0.441 Sum_probs=53.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047873 350 MVIDCFCKNGDTKTGFRLLKEMRSDGH-LPAVETYNALMNGLCKHG--------QLKNANMLLDTMLDLGVVPDDITYNI 420 (464)
Q Consensus 350 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~ 420 (464)
..+..+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. +.-+.+.+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777666532 23456677778887778888888888
Q ss_pred HHHHHHh
Q 047873 421 LLEGHCK 427 (464)
Q Consensus 421 l~~~~~~ 427 (464)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8777654
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.91 E-value=0.0043 Score=47.77 Aligned_cols=134 Identities=10% Similarity=0.010 Sum_probs=98.8
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCCcccHHH
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL-HATAVSFNT 169 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 169 (464)
.|+..-...+...+.+.|+..+|...|++...--...|......+.++....+++..|...++.+-+.+. ..++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4667777788888888999999999999888755556777888888888889999999999888876521 123455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+.+.+...|.+..|...|+..... -|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 778888889999999999988876 4555554445556677787776655444443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=1.9e-05 Score=54.06 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=47.5
Q ss_pred cCChhHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFR-IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
.|++++|+.+|+++...... ++...+..+..++.+.|++++|..++++ .+.+.. +......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777666421 1333445566777777777777777766 332222 33444455666777777777777
Q ss_pred HHHH
Q 047873 151 VFDE 154 (464)
Q Consensus 151 ~~~~ 154 (464)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00058 Score=63.92 Aligned_cols=135 Identities=10% Similarity=-0.058 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHHh--CC---ChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC--
Q 047873 3 FRLTLHAYSTMVHFLVA--HK---MHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF-- 74 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-- 74 (464)
.+.+..+|...+++... .+ .+.+|+.+|++++ ...|+. .++..+..++.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai-------------------~ldP~~a~a~A~la~~~~~~~~~~ 393 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL-------------------KSEPDFTYAQAEKALADIVRHSQQ 393 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------------HhCCCcHHHHHHHHHHHHHHHhcC
Confidence 46778888888887654 22 3779999999998 567777 667666555433211
Q ss_pred ------hhHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 047873 75 ------LDDAIQCFRLLRKH-YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147 (464)
Q Consensus 75 ------~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (464)
...+.+..++.... ..+.++.++..+.......|++++|...+++++..+ |+...|..+...+...|+.++
T Consensus 394 ~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 394 PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHH
Confidence 12222222222221 112233444444444444555555555555555544 344555555555555555555
Q ss_pred HHHHHHHHhhC
Q 047873 148 AQMVFDEFGKR 158 (464)
Q Consensus 148 a~~~~~~~~~~ 158 (464)
|...+++....
T Consensus 472 A~~~~~~A~~L 482 (517)
T PRK10153 472 AADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.0013 Score=61.63 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
..|..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444344444455555555555555432 3444455555555555555555555555443
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.88 E-value=0.0012 Score=54.02 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
.+...+...+..+...|++.+|++.|+.+..... +.+--..+...++.++.+.|+++.|+..|++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777777888899999999999999885422 1111226667788889999999999999999
Q ss_pred HHhCC
Q 047873 85 LRKHY 89 (464)
Q Consensus 85 ~~~~~ 89 (464)
+.+..
T Consensus 68 fi~~y 72 (203)
T PF13525_consen 68 FIKLY 72 (203)
T ss_dssp HHHH-
T ss_pred HHHHC
Confidence 88764
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.86 E-value=0.00041 Score=54.88 Aligned_cols=115 Identities=9% Similarity=-0.082 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHH
Q 047873 75 LDDAIQCFRLLRKH-YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 75 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
+..+...+..+.+. +..-....+..++..+...|++++|+..|++.+.....+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555322 212234566778888889999999999999998764332 245788899999999999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHH-------hcCChhHHHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHC-------KAKNLDEGFRLKSVM 190 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~ 190 (464)
++...... +....++..+...+. ..|+++.|...+++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99988763 334455666666666 788888666665543
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.84 E-value=0.019 Score=50.83 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (464)
..|+..++.-.+..-++.|..+|-++.+.+ +.++...+++++..++ .|+..-|.++|+.-... ++.+..--+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456777777788888999999999999887 5677788888888765 67788899999876664 33333444677788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccchhhh
Q 047873 390 LCKHGQLKNANMLLDTMLDLGVVPD--DITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKSSKYR 461 (464)
Q Consensus 390 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~~~~~ 461 (464)
+.+.++-..|..+|+..+.. +..+ ...|..++.--..-|+...+..+-+. ..+.|..-+.....+.++-.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 88999999999999976643 3333 66788888888888999887776555 344555544444444444433
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.00038 Score=48.65 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=52.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHCCCCCCHhhHHH
Q 047873 280 ILLDGFCKEGDLESALDIRKEMIKRGI-ELDNVAFTALISGFCRGG--------KVVEAERMLREMLKVGLKPDDATYTM 350 (464)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (464)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666888888888888888888 778888888887766542 23345566666666666666666666
Q ss_pred HHHHHH
Q 047873 351 VIDCFC 356 (464)
Q Consensus 351 ll~~~~ 356 (464)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 666554
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=4.5e-05 Score=49.73 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=39.7
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
...|++++|++.|++++. ..|++ .++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~-------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ-------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH-------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHH-------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888888888888874 23444 777788888888888888888888877764
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.0086 Score=46.21 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=110.0
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
.+.....+.=++++...-..+-.. ..|++.....|..++.+.|+..+|...|.+...--+..|....-.+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 344444445555555444333333 336777777888889999999999999988876545557777788888888899
Q ss_pred ChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHH
Q 047873 179 NLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (464)
++..|...++.+.+... ..++.+...+.+.+...|.+..|...|+.....-..|....+ ....+.+.|+.+ .+-.
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~--ea~a 214 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLR--EANA 214 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchh--HHHH
Confidence 99999999988876531 112334556778888899999999999988876333333333 233344444332 1235
Q ss_pred HHHHHHHHHHhC
Q 047873 258 EARKIVDEMCTN 269 (464)
Q Consensus 258 ~a~~~~~~~~~~ 269 (464)
+..++++.+.+.
T Consensus 215 q~~~v~d~~~r~ 226 (251)
T COG4700 215 QYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHhc
Confidence 777888888764
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.02 Score=50.13 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (464)
+.+..+.-+...|+...|..+-++.. -|+..-|...+.+++..++|++-.++-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556677778888888888866653 47888899999999999999887765432 1 24567888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 392 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+.|...+|..++.++ + + ..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888772 2 2 3456677888888888777554
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.035 Score=51.99 Aligned_cols=188 Identities=9% Similarity=-0.013 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.|-++.|..|.......-.++.|...|-++-.-.|..-.. .+. .+. ....-.+=+.+| -|++++|.++|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vk----rl~---~i~-s~~~q~aei~~~--~g~feeaek~yl 758 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVK----RLR---TIH-SKEQQRAEISAF--YGEFEEAEKLYL 758 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHH----Hhh---hhh-hHHHHhHhHhhh--hcchhHhhhhhh
Confidence 4567788888887777777888888777764333321111 110 011 011112222233 489999999988
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
.+.++++ .+....+.|++-+..++++.--... -..-..+|+.+...++....|++|.+.|..-..
T Consensus 759 d~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----- 824 (1189)
T KOG2041|consen 759 DADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----- 824 (1189)
T ss_pred ccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 7776642 3556667788888877765422110 011245778888888888888888888765321
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
....+.++.+..++++...+.+.+. .+....-.+..++.+.|.-++|.+.|-+
T Consensus 825 ----~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 ----TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ----hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1234666666666666665555543 3444556667777777777777666544
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.76 E-value=0.0066 Score=51.00 Aligned_cols=179 Identities=9% Similarity=-0.021 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc---HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG---CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
+-.....+...|++++|++.|+.+....+. +... ...++.++.+.++++.|...+++.++..+.....-+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 334455567789999999999999887522 2222 355677888999999999999999887655333333333333
Q ss_pred HHh--cC---------------Ch---hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 047873 139 LCK--EG---------------KI---KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198 (464)
Q Consensus 139 ~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 198 (464)
.+. .+ +. ..|+..|+.+.+. |-...-..+|...+..+... .-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---la 175 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---LA 175 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---HH
Confidence 321 11 11 2333444444443 22223344454444444321 01
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHH
Q 047873 199 VYTYSALINGLCKENRLDDAELLLHEMCER--GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266 (464)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~ 266 (464)
. .--.+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|.. ++|..+...+
T Consensus 176 ~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~------~~a~~~~~~l 238 (243)
T PRK10866 176 K-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN------AQADKVAKII 238 (243)
T ss_pred H-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh------HHHHHHHHHH
Confidence 1 1124677899999999999999999876 2233455566788889888876 4666665544
No 188
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=4.8e-05 Score=40.43 Aligned_cols=29 Identities=45% Similarity=0.816 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 410 (464)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.041 Score=51.97 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (464)
...+.+..+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-.... .+.-|.-...
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33455666677788899999998877765 4788899999999999999987666543332 2455777889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 389 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+|.+.|+.++|.+++-+.. +.. -...+|.+.|++.+|.++.-+
T Consensus 753 ~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999987653 122 467788889999998877544
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00048 Score=58.21 Aligned_cols=65 Identities=17% Similarity=-0.003 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.++..++..|...|++++|+..|+.+..... +....++..++.++...|+.++|..+|+.+++..
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455555556666666666666666554321 1123334444445555555555555555555543
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00014 Score=46.80 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=42.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
++..+.+.|++++|+..|+.+.+.. |-+...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556777788888888888877775 4456777777777777888888888777777654
No 192
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.005 Score=53.63 Aligned_cols=279 Identities=12% Similarity=0.009 Sum_probs=133.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
....+.+..++..|+..+....+.. +.+..-|..-+..+...++++++.--.+.-.+.. .-........-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 3444555555556666655555543 2233444444455555555555554444333321 1112233334444444444
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC-CCCHHhHHHH-HHHHHhCCChH
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTIL-LDGFCKEGDLE 292 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~ 292 (464)
..+|.+.++.- ..+ ....++..++....... +|...++..+ ..++.-.|+.+
T Consensus 133 ~i~A~~~~~~~---------~~~-----------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 133 LIEAEEKLKSK---------QAY-----------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred HHHHHHHhhhh---------hhh-----------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 44444444311 000 00122333333322211 2333344333 23445567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHH-------------HHHHHHhcC
Q 047873 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM-------------VIDCFCKNG 359 (464)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------ll~~~~~~~ 359 (464)
+|..+--.+++.+.. +....-.-..++--.++.+.+...|++.+..+ |+...... =..-..+.|
T Consensus 187 ~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 777766666655322 21111111222334566677777777766643 44322111 122234667
Q ss_pred ChHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 047873 360 DTKTGFRLLKEMRSD---GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD-DITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 435 (464)
.+..|.+.|.+.+.. +..|+...|........+.|+..+|+.-.++..+. .|. ...+..-..++...++|++|.
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777664 33445556666666667777777777777766532 211 112222223445667777777
Q ss_pred HHHHh-cCCCCc
Q 047873 436 KLQSE-KGLVSD 446 (464)
Q Consensus 436 ~~~~~-~~~~p~ 446 (464)
+-+++ +....+
T Consensus 342 ~d~~~a~q~~~s 353 (486)
T KOG0550|consen 342 EDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHhhccc
Confidence 77665 333333
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.0015 Score=56.60 Aligned_cols=204 Identities=10% Similarity=0.087 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhc----CCC-CCh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH----YFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDY----GYS-PSV 129 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 129 (464)
..|......|...|++++|.+.|.+.... +-+.. ...|......+.+. ++++|++.+++.... |-. .-.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34555566788888888888888876432 21111 23455555555444 888888888887642 211 113
Q ss_pred hhHHHHHHHHHhc-CChhhHHHHHHHHhhC----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-----CC
Q 047873 130 YVFNVLMHKLCKE-GKIKDAQMVFDEFGKR----GLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-----PD 198 (464)
Q Consensus 130 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 198 (464)
..+..+...|... |+++.|.+.|++.... +-+. -...+..+...+.+.|++++|.++|++....-.. .+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 4566777888888 8999999999887543 2110 1234667788899999999999999998764322 12
Q ss_pred HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 199 VY-TYSALINGLCKENRLDDAELLLHEMCERG--LTPN--DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 199 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
.. .+...+-++...||+..|.+.+++..... +..+ ......|+.++-. ++. ..+..++.-|+.+.+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~---e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDV---EAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-C---CCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCH---HHHHHHHHHHcccCc
Confidence 22 22334446777899999999999987652 2222 3334455665554 333 356677777766643
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.68 E-value=0.0039 Score=45.38 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 319 GFCRGGKVVEAERMLREMLKVGLKPD--DATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555443322 12344444455555555555555555544
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=6.4e-05 Score=39.91 Aligned_cols=29 Identities=45% Similarity=0.820 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.64 E-value=0.0023 Score=55.58 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH----CC-CCCCH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIK----RGIE-LDNVAFTALISGFCRGGKVVEAERMLREMLK----VG-LKPDD 345 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 345 (464)
..|..+...|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566666677777888888776554322 1211 1234677778888888888888888876543 22 11234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.+.-+|...|.-..++++|+..+.+-..- ...-....+.+|..+|...|..+.|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566777777777888888877653221 112245678888888888888888887776654
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.63 E-value=0.0023 Score=48.70 Aligned_cols=103 Identities=16% Similarity=-0.020 Sum_probs=81.6
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
|++++. ...-....-+...|++++|..+|..+...+ +.+..-+..|..++...+++++|+..|......+.. |+...
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~ 108 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPV 108 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCcc
Confidence 666666 555555666678899999999999988876 456677788888888899999999999988776654 66666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
-....++...|+.+.|...|+....+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 67788999999999999999888764
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.62 E-value=0.0045 Score=53.89 Aligned_cols=202 Identities=14% Similarity=-0.001 Sum_probs=108.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH--HHh
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL--LRK 87 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~ 87 (464)
...-+.-+.+.|+.+....+|+.+++-+.. + ..--..+|..|.++|.-.+++++|++.-.. ...
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTe--D------------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla 85 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTE--D------------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA 85 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcch--H------------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH
Confidence 344566788999999999999999853110 0 001126788899999999999999997422 111
Q ss_pred C--CC-CCChhcHHHHHHHHHcCCChhhHHHHHHHHHh----cCCC-CChhhHHHHHHHHHhcCCh--------------
Q 047873 88 H--YF-RIPARGCRCLIDRMMRTNLPTVTLGFYLEILD----YGYS-PSVYVFNVLMHKLCKEGKI-------------- 145 (464)
Q Consensus 88 ~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~-------------- 145 (464)
+ |- -....+...+...+--.|.+++|+....+-+. .|-. ....++..+...|...|+.
T Consensus 86 r~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 86 RLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred HHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 1 10 11234455566777778899998877665442 2211 1334455566666665542
Q ss_pred ------hhHHHHHHHHhh----CCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHh----hCCCC-CCHHHHHHHHHHH
Q 047873 146 ------KDAQMVFDEFGK----RGL-HATAVSFNTLINGHCKAKNLDEGFRLKSVME----GSGMR-PDVYTYSALINGL 209 (464)
Q Consensus 146 ------~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~ 209 (464)
+.|.++|.+-.+ .|- -.-...|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+.+++
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 123333322111 110 0012234444455555566666655543321 11211 1223455566666
Q ss_pred HhcCChhHHHHHHHHH
Q 047873 210 CKENRLDDAELLLHEM 225 (464)
Q Consensus 210 ~~~~~~~~a~~~~~~~ 225 (464)
.-.|+++.|.+.|...
T Consensus 246 iflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLT 261 (639)
T ss_pred hhhcccHhHHHHHHHH
Confidence 6666666666655543
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.61 E-value=0.00021 Score=48.04 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
|....+|+.+...|...|++++|++.|++++.- .+..+ ..|+. .++..+...|...|++++|++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 68 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-------------EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------------HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455778999999999999999999999999831 11111 12232 6788899999999999999999
Q ss_pred HHHHHh
Q 047873 82 FRLLRK 87 (464)
Q Consensus 82 ~~~~~~ 87 (464)
+++..+
T Consensus 69 ~~~al~ 74 (78)
T PF13424_consen 69 YQKALD 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987653
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.60 E-value=0.00023 Score=46.55 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhc
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDY 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 123 (464)
.+|..+...+...|++++|+..|++..+.+ +.+...+..+..++...| ++++|+..+++.++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 466667777777777777777777777765 345666777777777777 577777777776653
No 201
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0031 Score=54.93 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=75.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcC----CCC-hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKG----MGS-SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
-++.|.+.|+|..|...|+++++.-. ... ....... .-...++.++..|.+.+++..|++..+..+.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35678999999999999999874211 111 0011110 1113455566666666666666666666666
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh-HHHHHHHHh
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD-AQMVFDEFG 156 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 156 (464)
.+ +.+..+...-..++...|+++.|...|+++++..+. |-.+-+.|+.+..+.....+ ..++|..|-
T Consensus 286 ~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 286 LD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred cC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 445556556666666666666666666666665443 44444444444443333332 244555553
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.0039 Score=49.61 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 196 RPDVYTYSALINGLCK-----ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 196 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
..+-.+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|+..+-+ |.+- -..+|+.+-.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-------p~n~fQ~~F~-- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-------PRNFFQAEFM-- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------cccHHHHHhc--
Confidence 4466677777777654 46677777778888888888888888888887765 4331 1111111111
Q ss_pred CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 047873 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (464)
- -..+-+-|++++++|...|+.||..++..+++.+++.+
T Consensus 114 -------------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 -------------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -------------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 11233446666666666666666666666666665554
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00022 Score=46.47 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=21.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
.|++++|++.|+++.... |-+...+..++.++.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444443 22334444444444444444444444444443
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.52 E-value=0.0028 Score=56.56 Aligned_cols=68 Identities=9% Similarity=-0.120 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-h---hHHHHHHHHHhcCChhH
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-L---VLDALMIVYVDLGFLDD 77 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~g~~~~ 77 (464)
.-|.+..+|+.++.+|...|++++|+..|++++ .+.|+. . +|..+..+|...|+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL-------------------eL~Pd~aeA~~A~yNLAcaya~LGr~dE 130 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETAL-------------------ELNPNPDEAQAAYYNKACCHAYREEGKK 130 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------hhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 346788899999999999999999999999988 566776 2 48899999999999999
Q ss_pred HHHHHHHHHhC
Q 047873 78 AIQCFRLLRKH 88 (464)
Q Consensus 78 A~~~~~~~~~~ 88 (464)
|++.+++..+.
T Consensus 131 Ala~LrrALel 141 (453)
T PLN03098 131 AADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.47 E-value=0.00076 Score=44.61 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=36.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
++|.+++++++|++.++.++ ...|++ ..|.....++.+.|++++|.+.|+.+.+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l-------------------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL-------------------ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH-------------------HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45666777777777777766 344444 666666666777777777777777666654
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.46 E-value=0.0087 Score=48.92 Aligned_cols=169 Identities=14% Similarity=0.095 Sum_probs=99.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+-..+..+...|++.+|++.|+.+....+. ....+...++.++.+.|+++.|...+++.++.-+.....-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3344555677899999999999999877422 22456778888999999999999999999887654332223322222
Q ss_pred HHhcC-------------ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 139 LCKEG-------------KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 139 ~~~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
.+..+ ...+|...|+ .++.-|-...-..+|...+..+... =...--.+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 22111 1123333333 3344444444555565555554421 01111236
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCc
Q 047873 206 INGLCKENRLDDAELLLHEMCERGLTPN----DVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 250 (464)
...|.+.|.+..|..-++.+.+. -|+ ......++.+|.+.|..
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCCh
Confidence 77889999999999999998876 233 23445667777777754
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.45 E-value=0.003 Score=50.26 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=88.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHH
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (464)
...|+..... ..+..+|..++..+.+.. ....|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~-~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------ 103 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRD-VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------ 103 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcC-CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------
Confidence 3455554222 348889999999998875 44467888889999999999999999999999988754 3332
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047873 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
|. ..+.++..- --.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 104 ---------p~-n~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ---------PR-NFFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------cc-cHHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 122222221 223557899999999999999999999999999977665
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.44 E-value=0.048 Score=44.89 Aligned_cols=59 Identities=7% Similarity=-0.089 Sum_probs=38.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPD---VYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 169 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
.+.+.|.+.|.+..|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456677888888888888888765 2222 233455667777888888777766655544
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0056 Score=51.88 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC--CChhhHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS--PSVYVFNVL 135 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 135 (464)
..|...+..+.+.|++++|+..|+.+....+... +.++..++..+...|++++|...|+.+.+..+. ....++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3344444444555666666666666666531111 235555666666666666666666666653322 123333444
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|+.+.|.++|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666666554
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.0087 Score=46.02 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh-----CCCCCCccc
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-----RGLHATAVS 166 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 166 (464)
...++..+...|++++|..+++.++...+- +...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555566666666666666665543 556666666666666666666666655532 255555544
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.30 E-value=0.12 Score=46.21 Aligned_cols=411 Identities=14% Similarity=0.126 Sum_probs=204.2
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 95 (464)
.+.+.|++.+|.++|.++..+.. .+...+. ....-+.++++|.. ++.+.....+....+.. | ..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~--~~~f~lk----------eEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s 78 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE--SSPFLLK----------EEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KS 78 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--cchHHHH----------HHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-Cc
Confidence 45678999999999999875321 1111111 11334567777764 45555555555555442 2 33
Q ss_pred cHHHHHHH--HHcCCChhhHHHHHHHHHhc--CCCC------------ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 96 GCRCLIDR--MMRTNLPTVTLGFYLEILDY--GYSP------------SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 96 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
.|..+..+ +-+.+.+.+|++.+..-... +..+ |-..-+..+.++...|++.++..+++++..+=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 45555444 34678888888877665443 2211 12222556778888999999999888876542
Q ss_pred C----CCCcccHHHHHHHHHhc--------CC-------hhHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhc--
Q 047873 160 L----HATAVSFNTLINGHCKA--------KN-------LDEGFRLKSVMEGS------GMRPDVYTYSALINGLCKE-- 212 (464)
Q Consensus 160 ~----~~~~~~~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~-- 212 (464)
+ .-+..+|+.++-.+.+. .. ++.+.-..+++... .+.|.......++....-.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 2 35777787755544432 11 22222222333211 1233333334444333221
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHHh
Q 047873 213 NRLDDAELLLHEMCERGLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN----PDKITYTILLDGFCK 287 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 287 (464)
.+..--++++..-...-+.|+ ..+...+...+.+. .+++..+-+.+....+. .=..++..++....+
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~--------~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSD--------PEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcC--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 112222233332222222333 12222333333331 12333333332221110 012345555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCC------------------------------------------CH-HHHHHHHH---HHh
Q 047873 288 EGDLESALDIRKEMIKRGIEL------------------------------------------DN-VAFTALIS---GFC 321 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~------------------------------------------~~-~~~~~l~~---~~~ 321 (464)
.++...|.+.+.-+.-.++.. |. .....++. -+-
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 666555555554433322110 10 11111111 122
Q ss_pred ccCC-hHHHHHHHHHHHHCCCCCCHhhHHHHH----HHHHh---cCChHHHHHHHHHHHhCCCCcC----HHHHHHHHH-
Q 047873 322 RGGK-VVEAERMLREMLKVGLKPDDATYTMVI----DCFCK---NGDTKTGFRLLKEMRSDGHLPA----VETYNALMN- 388 (464)
Q Consensus 322 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~- 388 (464)
+.|. -++|+.+++.+.+-. +.|...-+.+. ..|.. ...+..-..+-+-+.+.|+.|- ...-|.+.+
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 2333 566677776666542 22333322222 12221 1223333333333344466553 223344433
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchhHHHHhhc
Q 047873 389 -GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455 (464)
Q Consensus 389 -~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~ 455 (464)
-+..+|+++++.-.-.-+.+ +.|++.+|..+.-......++++|..++.+ +.|+..++++=+.
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~--LP~n~~~~dskvq 533 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK--LPPNERMRDSKVQ 533 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh--CCCchhhHHHHHH
Confidence 34568899888776655554 689999999998888899999999999985 4566666665443
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.26 E-value=0.0013 Score=43.51 Aligned_cols=58 Identities=7% Similarity=-0.066 Sum_probs=42.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 67 IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..|.+.+++++|+++++.+...+ |.+...+.....++.+.|++.+|.+.++..++.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677788888888888877775 44666777777777778888888888887777654
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.16 E-value=0.14 Score=44.69 Aligned_cols=262 Identities=13% Similarity=0.096 Sum_probs=162.3
Q ss_pred hhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 60 LVLDALMI--VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 60 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
..+..++. .-.-.|++++|.+-|+.|.... ..-.-....|.-...+.|..+.|.+.-+.....-+. -...+..++.
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe 196 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLE 196 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHH
Confidence 44444443 3456799999999999987641 111122334444445788888888888887765544 5778888999
Q ss_pred HHHhcCChhhHHHHHHHHhhCC-CCCCccc--HHHHHHHHH---hcCChhHHHHHHHHHhhCCCCCCHHH-HHHHHHHHH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRG-LHATAVS--FNTLINGHC---KAKNLDEGFRLKSVMEGSGMRPDVYT-YSALINGLC 210 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 210 (464)
..+..|+|+.|+++++.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ +.|+..- -..-...+.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf 274 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALF 274 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHH
Confidence 9999999999999998765542 2233221 122332221 12334455554444433 3555432 233456788
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNP-DKITYTILLDGFCKE 288 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 288 (464)
+.|+..++-.+++.+-+..+.|+. + .+..+.+.|+. ++.-+++.... .++| +......+..+-...
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--------a~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--------ALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred hccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--------HHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 899999999999999887544443 2 23334555543 33333333221 1233 455666677777888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHC
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCR-GGKVVEAERMLREMLKV 339 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 339 (464)
|++..|..--+...+. .|....|..|...-.. .|+-.++...+.+..+.
T Consensus 343 ~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888887776666654 5567777777766544 48888888888888775
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.0034 Score=48.28 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHH-----hcCCCCChhhHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-----DYGYSPSVYVFN 133 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 133 (464)
+...++..+...|++++|+.+.+.+...+ |.+...+..++.++...|+...|.+.|+++. +.|..|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45557777778888888888888888776 5677788888888888888888888887764 357777766543
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=97.05 E-value=0.09 Score=40.26 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=69.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 361 (464)
..-+...|++++|..+|+-+...++. +..-+..|..++-..+++++|...|......+ ..|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34456778888888888888776654 66667777777778888888888888877665 34666677778888888888
Q ss_pred HHHHHHHHHHHhC
Q 047873 362 KTGFRLLKEMRSD 374 (464)
Q Consensus 362 ~~a~~~~~~~~~~ 374 (464)
+.|+..|...++.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888874
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.15 Score=41.58 Aligned_cols=204 Identities=11% Similarity=0.089 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS----KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLD 76 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 76 (464)
|++..-...|..-..+|-...++++|-..+.++.. .+++..+. ..+...+-.......+.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA----------------KayEqaamLake~~kls 88 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA----------------KAYEQAAMLAKELSKLS 88 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH----------------HHHHHHHHHHHHHHHhH
Confidence 34445566677777788888888888888877762 11122222 22233333334444555
Q ss_pred HHHHHHHHHH----hCCCCCChhcH-HHHHHHHHcCCChhhHHHHHHHHHhc---CC--CCChhhHHHHHHHHHhcCChh
Q 047873 77 DAIQCFRLLR----KHYFRIPARGC-RCLIDRMMRTNLPTVTLGFYLEILDY---GY--SPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 77 ~A~~~~~~~~----~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~ 146 (464)
++.++|++.. +.| .|+..+. .--..-..+..++++|+++|++.... +- ..-...+..+.+.+.+...++
T Consensus 89 Evvdl~eKAs~lY~E~G-spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECG-SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 5555555532 223 2222111 11112234566778888888775532 11 112334556666777777777
Q ss_pred hHHHHHHHHhhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCChhHH
Q 047873 147 DAQMVFDEFGKR----GLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVMEGSG---MRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 147 ~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
+|-..+.+-... .--++ -..|...|-.+.-..++..|...++..-+.+ -..+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 766555443211 00111 1224455556666778888888887754432 233456666777665 45666666
Q ss_pred HHHH
Q 047873 219 ELLL 222 (464)
Q Consensus 219 ~~~~ 222 (464)
.+++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5554
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.98 E-value=0.25 Score=44.20 Aligned_cols=384 Identities=12% Similarity=0.130 Sum_probs=211.8
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCh
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR----IPA 94 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~ 94 (464)
+.|.+.+|++.+..-..+-...++.-+-..+-+ .-+|-..-+..+..+...|++.+++.+++++...-.+ .+.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~---l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ---LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH---HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 678888888887765433222222222221111 1122234456677889999999999999998765333 677
Q ss_pred hcHHHHHHHHHcC--------CChhhHHHHHHH-------HHhc------CCCCChhhHHHHHHHHHhc--CChhhHHHH
Q 047873 95 RGCRCLIDRMMRT--------NLPTVTLGFYLE-------ILDY------GYSPSVYVFNVLMHKLCKE--GKIKDAQMV 151 (464)
Q Consensus 95 ~~~~~l~~~~~~~--------~~~~~a~~~~~~-------~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~ 151 (464)
.+|+.++-.+.++ ...+-+.+.|+- +... ...|.......++....-. .+..--.++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 8888765555432 222222222222 2111 1234444444444443322 223334455
Q ss_pred HHHHhhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 152 FDEFGKRGLHATAV-SFNTLINGHCKAKNLDEGFRLKSVMEGSGMR----PDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
++.....-+.|+-. +...+...+.. +.+++..+-+.+....+. .-..++..++....+.++...|.+.+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55554444445432 23333333333 555555555554433211 124568888888999999999999888876
Q ss_pred HCCCCCCHHHHH-------HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHH---HHHHHhCCC-hHHHH
Q 047873 227 ERGLTPNDVIFT-------TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL---LDGFCKEGD-LESAL 295 (464)
Q Consensus 227 ~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~-~~~a~ 295 (464)
-.. |+...-. .+-+..+..... ..+...-+.+++.....++.. ......+ ..-+.+.|. -++|+
T Consensus 326 ~ld--p~~svs~Kllls~~~lq~Iv~~DD~~--~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 326 ILD--PRISVSEKLLLSPKVLQDIVCEDDES--YTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred hcC--CcchhhhhhhcCHHHHHHHHhcchHH--HHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHH
Confidence 653 3322111 122222211000 112233444555554443321 1111222 233455565 88899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH----HHhc---cCChHHHHHHHHHHHHCCCCCCH----hhHHHHHH--HHHhcCChH
Q 047873 296 DIRKEMIKRGIELDNVAFTALIS----GFCR---GGKVVEAERMLREMLKVGLKPDD----ATYTMVID--CFCKNGDTK 362 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~--~~~~~~~~~ 362 (464)
++++.+++-.. .|..+-+.+.. +|.+ ...+.+-..+-+-+.+.|++|-. ..-|.|.+ .+...|++.
T Consensus 401 nLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 401 NLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 99998887532 25544444332 2221 23455555555556667776543 33344443 356789999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047873 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 420 (464)
++.-.-..+.+ +.|++.+|..+.-++....++++|+.++..+ +|+..+++.
T Consensus 480 kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 480 KCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 98876665655 6799999999999999999999999999874 677777765
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.97 E-value=0.25 Score=43.95 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRG---IELDNVAFTALISGFCR---GGKVVEAERMLREMLKVGLKPDDATYTM 350 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (464)
+...++-+|....+++..+++++.+...- +.-...+-.....++.+ .|+.++|+.++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455557888888888888888887651 11123333345556666 7888888888888665555677788877
Q ss_pred HHHHHH----h-----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----HHHHHHHH---HHHH-hCC---
Q 047873 351 VIDCFC----K-----NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ----LKNANMLL---DTML-DLG--- 410 (464)
Q Consensus 351 ll~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~---~~~~-~~~--- 410 (464)
+...|- . ....++|...|.+.-+. .|+...=-.++..+...|. -.+..++- ..+. +.|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 776652 1 12366777777766654 2332221112222222222 11222222 2222 222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHH
Q 047873 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACY 450 (464)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~ 450 (464)
-..+.-.+.+++.++.-.|+++.|.+..++ ....|...-.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 223555667778888888888888888887 4555654333
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.16 Score=41.81 Aligned_cols=154 Identities=9% Similarity=-0.020 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----------CChh----cH-HHHH--HHHHcCCChhhHHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR-----------IPAR----GC-RCLI--DRMMRTNLPTVTLGFYLEIL 121 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~----~~-~~l~--~~~~~~~~~~~a~~~~~~~~ 121 (464)
..|+.-+.++.+...+++|.--++.+...+.+ |+.. -| ..++ .+....|++.+.+.-+..+.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77888888888888888888777666554411 1100 00 0111 12223444444433333222
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 047873 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201 (464)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 201 (464)
. ....++..+......+...+.+++-. ..+.+.++..+.-.|.+.-...++.+.++...+.++..
T Consensus 150 ~--------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 150 T--------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred H--------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 1 01112222222222233334433321 12344555555566666666666666666554555666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
...|++.-...||.+.|...|++..+.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666777777777777665543
No 220
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.36 Score=45.69 Aligned_cols=109 Identities=8% Similarity=0.066 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+|+.+...+.....|++|.+.|..-... ...+.++....++++...+-+. .+-+....-.+..++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHH
Confidence 45555666666555666666665432111 1223333333344333322222 222555566667777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.+.|.-++|.+.|-+-.. | ...+..|...++|.+|.++-+...
T Consensus 863 ~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777666543221 1 234455666667777766655543
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.95 E-value=0.051 Score=48.97 Aligned_cols=132 Identities=8% Similarity=-0.043 Sum_probs=66.8
Q ss_pred HHH--HHHHHHHHh--CC---ChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh--------
Q 047873 8 HAY--STMVHFLVA--HK---MHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVD-------- 71 (464)
Q Consensus 8 ~~~--~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-------- 71 (464)
.+| ..++++... ++ ..+.|+.+|.++++.+ ..+|+. ..|..+...+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----------------~ldp~~a~a~~~lA~~h~~~~~~g~~~ 315 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS----------------DIQTLKTECYCLLAECHMSLALHGKSE 315 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----------------cCCcccHHHHHHHHHHHHHHHHhcCCC
Confidence 566 555555544 22 2466777788877432 344554 455444443321
Q ss_pred -cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 72 -LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 72 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
.....+|++..++..+.+ +.|+.+...+..++.-.++++.|..+|++....++. ...+|......+.-.|+.++|.+
T Consensus 316 ~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 316 LELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred chHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 122334444555555554 344555555555555555555555555555554433 34444444444455555555555
Q ss_pred HHHHHhh
Q 047873 151 VFDEFGK 157 (464)
Q Consensus 151 ~~~~~~~ 157 (464)
.+++..+
T Consensus 394 ~i~~alr 400 (458)
T PRK11906 394 CIDKSLQ 400 (458)
T ss_pred HHHHHhc
Confidence 5555443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.92 E-value=0.0033 Score=42.18 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GH-LPA-VETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.+++.+...|...|++++|+..|++..+. |. .|+ ..++..+..+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666666655555432 10 011 3345555556666666666666655543
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.83 E-value=0.0029 Score=36.73 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
.+|..+...|.+.|++++|+++|+++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999994
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.83 E-value=0.3 Score=42.85 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
+|..++..-...|+.+-|..+++. .|.+. .=+..+.+.|+.+.| +.+..+.|- ||. +|..++..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~SgD-~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESGD-TDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcCC-ccH-HHHHHHHHHH
Confidence 456677777889999999988763 33332 224456667777777 456666552 132 4444444322
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
.. ... +++ .+... .|. -..+...|++..+.+....+|..-.+ ........+-.++. ..+.+.-..
T Consensus 68 ~l-~~s---~f~-~il~~--~p~---a~~l~~~~~r~~~~~~L~~~y~q~d~----~~~~a~~~l~~~~~-~~~~~~~~~ 132 (319)
T PF04840_consen 68 KL-SLS---QFF-KILNQ--NPV---ASNLYKKYCREQDRELLKDFYYQEDR----FQELANLHLQEALS-QKDVEEKIS 132 (319)
T ss_pred hC-CHH---HHH-HHHHh--Ccc---hHHHHHHHHHhccHHHHHHHHHhcch----HHHHHHHHHHHHHh-CCChHHHHH
Confidence 22 221 233 22222 122 13345556666666665555543211 01111111222222 234333333
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHH
Q 047873 221 LLHEMCER-GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299 (464)
Q Consensus 221 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (464)
.+....+. +-..+......++.-..+. -+-..-++.-. +......+.+..+.-+...|+...|.++-.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~~e~q~~L---------l~~Q~~Le~~~--~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k 201 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKLIEEQIKL---------LEYQKELEEKY--NTNFVGLSLNDTIRKLIEMGQEKQAEKLKK 201 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHH---------HHHHHHHHHHh--ccchhcCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 33333221 0001111111222111110 01111111111 111122345555667778899888887765
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 047873 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379 (464)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (464)
+. . .|+...|...+.+++..+++++-..+... +-.+.-|..++.+|.+.|...+|..++.++ +
T Consensus 202 ~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~------~- 264 (319)
T PF04840_consen 202 EF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI------P- 264 (319)
T ss_pred Hc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC------C-
Confidence 54 2 36899999999999999999988876542 224578999999999999999999888772 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047873 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425 (464)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (464)
+..-+..|.+.|++.+|.+..-+. -|...+..+...+
T Consensus 265 ---~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 265 ---DEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRC 301 (319)
T ss_pred ---hHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHC
Confidence 245678889999999998765443 2455444444444
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.80 E-value=0.012 Score=43.37 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHH-HHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFAS-ILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
|...+..++.++++.|+.+....++++.- |.......-.. ........|+..++.+++.+|..+|++..|+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 35678889999999999999999987764 11111111110 334447788889999999999999999999999998
Q ss_pred HHhC-CCCCChhcHHHHHHHHHc
Q 047873 85 LRKH-YFRIPARGCRCLIDRMMR 106 (464)
Q Consensus 85 ~~~~-~~~~~~~~~~~l~~~~~~ 106 (464)
+.+. +++.+...|..|+.-...
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Confidence 8765 566677788888865443
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.80 E-value=0.088 Score=38.86 Aligned_cols=102 Identities=9% Similarity=0.102 Sum_probs=67.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (464)
|..++..++.++++.|+.+....+++..= |+..+...- .+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777777775542 222221100 000 1122346788899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 047873 208 GLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 249 (464)
+|+..|++..|+++.+...+. +++.+...|..|+.-.....+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999887765 666678888888876655444
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.77 E-value=0.067 Score=39.92 Aligned_cols=84 Identities=10% Similarity=0.049 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+...+..-+....+.|++++|++.|+.+..+-.. -+-...+...++.+|.+.|++++|+..++++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF---------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444444555566777777777777777643221 1111255566777777777777777777777
Q ss_pred HhCCCCCChhcHHHHHHHH
Q 047873 86 RKHYFRIPARGCRCLIDRM 104 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~ 104 (464)
.+..+......|...+.++
T Consensus 74 irLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCCCCCccHHHHHHHH
Confidence 7775433333444444444
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.72 E-value=0.41 Score=42.89 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDG-HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT-YNILLEG 424 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~ 424 (464)
+|...+..-.+....+.|..+|-++++.+ ..+++..+++++..++ .|+...|.++|+.-... -||... -...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 35556666677778899999999999987 5577888888888665 57888999999886653 344443 4566677
Q ss_pred HHhcCCHHHHHHHHHh--cCCCCc--hhHHHHhhccchhhh
Q 047873 425 HCKHGNPEDFDKLQSE--KGLVSD--YACYTSLVSKSSKYR 461 (464)
Q Consensus 425 ~~~~g~~~~a~~~~~~--~~~~p~--~~~~~~ll~~~~~~~ 461 (464)
+.+.++-+.|..++++ -.+..+ ...|..+|+=-+++|
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 7788998999999885 122222 667777776544444
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.033 Score=46.25 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLM 136 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 136 (464)
.|+.-+.. .+.|++.+|.+.|....+..+. -.+.++.-|+..+...|+++.|..+|..+.+.-+.. -+..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 44433333 3456666666666666665311 123445556666666666666666666666543221 234555666
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666667777777777766665
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.057 Score=44.93 Aligned_cols=99 Identities=12% Similarity=0.056 Sum_probs=77.0
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCCCcccHHH
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--LHATAVSFNT 169 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 169 (464)
...|+..+. +.+.|++..|.+.|...++..+.. .+.++--|..++...|+++.|..+|..+.+.. -+.-+..+-.
T Consensus 142 ~~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 345665554 457788999999999999876441 24456678999999999999999999988762 1122356777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
|..+..+.|+.++|..+|+.+.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888889999999999999999876
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.67 E-value=0.07 Score=39.81 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
+-.-+....+.|++++|++.|+.+..+-+ +-...+-..++.++.+.++++.|...+++.++..+...-.-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33344456688999999999999988742 2235667889999999999999999999999988765555566666665
Q ss_pred HhcCC
Q 047873 140 CKEGK 144 (464)
Q Consensus 140 ~~~~~ 144 (464)
+....
T Consensus 93 ~~~~~ 97 (142)
T PF13512_consen 93 SYYEQ 97 (142)
T ss_pred HHHHH
Confidence 54443
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.66 E-value=0.054 Score=39.22 Aligned_cols=89 Identities=13% Similarity=-0.017 Sum_probs=37.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV---YVFNVLMHKLCKEGKI 145 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 145 (464)
+...|+.+.|++.|.+....- |-...+|+.-..++.-.|+.++|++-+++.++..-.... ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344444455555444444432 223444444444444444555554444444432211111 1222223334445555
Q ss_pred hhHHHHHHHHhhC
Q 047873 146 KDAQMVFDEFGKR 158 (464)
Q Consensus 146 ~~a~~~~~~~~~~ 158 (464)
+.|..=|+..-+.
T Consensus 132 d~AR~DFe~AA~L 144 (175)
T KOG4555|consen 132 DAARADFEAAAQL 144 (175)
T ss_pred HHHHHhHHHHHHh
Confidence 5555555444443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.65 E-value=0.058 Score=48.53 Aligned_cols=68 Identities=10% Similarity=-0.076 Sum_probs=56.1
Q ss_pred CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 55 THLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA---RGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 55 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
..|+. ..++.+..+|.+.|++++|+..|++..+.+ |-+. .+|..+..+|...|+.++|++.++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555 889999999999999999999999988875 2233 34888999999999999999999998875
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.63 E-value=0.029 Score=40.65 Aligned_cols=138 Identities=13% Similarity=0.156 Sum_probs=66.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
+.-.|..++..++..+...++...++..+.=.++.+....--..++..+... ...+|+....+..+-.+- ...
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-----~~s 86 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-----KLS 86 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--------
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----chH
Confidence 4458999999999999987665555555555555431111000122222221 134445444444443221 123
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+.....+..+...|+-+...+++..+.+. -.+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555556666666666666665542 234566666666666666666666666666666553
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.24 Score=46.29 Aligned_cols=252 Identities=13% Similarity=0.165 Sum_probs=134.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHH---------HHHhhCCCCCCcccHHHHHHHHHhcCChh--HHHHHHHHHhhCCCC
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVF---------DEFGKRGLHATAVSFNTLINGHCKAKNLD--EGFRLKSVMEGSGMR 196 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~ 196 (464)
-+..+.+-+..|.+.|.+++|.++- +.+... ..+...++..=.+|.+.++.. +...-++++++.|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3344455566777888887776532 111111 123344555556666655533 344445677777766
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCcccccCHHHHHHHHHHHH--hC
Q 047873 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT-----TLIDGHCKNGRIDMAGDMKEARKIVDEMC--TN 269 (464)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~ 269 (464)
|+... +...++-.|.+.+|-++|.+--..+ .....|+ -...-+...|.. ++-..+.++-. ..
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~------~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDP------KEKKMLIRKRADWAR 701 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCCh------HHHHHHHHHHHHHhh
Confidence 77643 3445566677777777775532210 0011111 112223333332 12111111110 00
Q ss_pred CC-CCCHHhHHHHHHHHHhCCChHHHHHHHHH------HHHcCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 270 GL-NPDKITYTILLDGFCKEGDLESALDIRKE------MIKRGIE---LDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 270 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
.+ +| .+....+...|+.++|..+.-+ +.+.+.+ .+..+...+...+.+...+.-|.++|..|-..
T Consensus 702 ~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 702 NIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 11 12 2234445566777777665321 1111111 13445555555566677777888888876432
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE-----------TYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 340 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
..+++.....++|.+|..+-++..+. .||+. -|...-.+|.+.|+..+|..+++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34667778889999998887766553 33321 244555788899999999999998864
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.33 Score=39.69 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 383 YNALMNGLCKHGQLKNANMLLDTMLD---LGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 383 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 439 (464)
|...|-.+....++..|.+.++.--+ ..-+-+..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 33344444455566666666655322 11122455556666665 4466666555544
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.4 Score=40.53 Aligned_cols=147 Identities=16% Similarity=0.053 Sum_probs=102.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh
Q 047873 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180 (464)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (464)
.......|++.+|..+|......... +......++.+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34566789999999999999887665 56777789999999999999999999987652111222223345566666666
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCc
Q 047873 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 250 (464)
.+...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.--|..
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 6666666665542 3366666778888999999999998877776552 122555666677766666644
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.039 Score=48.37 Aligned_cols=92 Identities=13% Similarity=-0.026 Sum_probs=55.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC-----CCCC---------ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKH-----YFRI---------PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
.+.|.+.|++..|..-|+++... +.++ ...++..+..++.+.+.+..|+...++++..++. |+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 44688889999999988886542 1111 1223445555556666666666666666655543 5555
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.-.-..++...|+++.|+..|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555566666666666666666666554
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.45 E-value=1.2 Score=45.08 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=69.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
.+..--++|.+..|..++..-.+. -..+|.+....+.+...+++|.-+|+..-+ ..-.+.+|..+|+
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 333334555555555544321111 123444444555556667776666655422 1234566667777
Q ss_pred hHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVE--TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 438 (464)
|.+|+.+-.++... -+.. +-..|+.-+...+++-+|-++..+.... | ...+..+++...|++|.+..
T Consensus 981 Wr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 981 WREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHH
Confidence 77777776665432 1211 2245666677777777777777665431 1 12223344445555555554
Q ss_pred Hh
Q 047873 439 SE 440 (464)
Q Consensus 439 ~~ 440 (464)
..
T Consensus 1050 ~~ 1051 (1265)
T KOG1920|consen 1050 SK 1051 (1265)
T ss_pred Hh
Confidence 43
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.43 E-value=0.58 Score=41.15 Aligned_cols=310 Identities=15% Similarity=0.127 Sum_probs=190.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHH--cCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhhHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM--RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK--LCKEGKIKDAQ 149 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~ 149 (464)
....+...|..-++. ..|..|-.++. ..|+-..|..+-.+..+. +..|....-.++.+ -.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344555555543322 34555555544 457777777776665432 12244444444433 34579999999
Q ss_pred HHHHHHhhCCCCCCcccHH----HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 150 MVFDEFGKRGLHATAVSFN----TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
+-|+.|... +.+-. .|.-..-+.|+.+.|.++-+..-... +.-...+...+...+..|+|+.|+++.+.-
T Consensus 141 ~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 141 KKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999762 33322 23333346889999998888776543 234567788999999999999999999987
Q ss_pred HHCC-CCCCHH--HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhCCChHHHHHHHHHH
Q 047873 226 CERG-LTPNDV--IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI-TYTILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 226 ~~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
.... +.++.. .-..|+.+-.... .+ .+...|...-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~-ld--adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSL-LD--ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHH-hc--CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 6542 233322 1222333222110 00 123455555444444 344432 2233456788999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 047873 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-GLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379 (464)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (464)
-+..+.|+. +... ...+.| +.+.+-+++..+. .++| +......+..+-...|++..|..--+.... ..|.
T Consensus 290 WK~ePHP~i--a~lY--~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pr 361 (531)
T COG3898 290 WKAEPHPDI--ALLY--VRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPR 361 (531)
T ss_pred HhcCCChHH--HHHH--HHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCch
Confidence 988666543 2222 233444 4555555554432 2334 445666677777888998888877666665 4678
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 047873 380 VETYNALMNGLCK-HGQLKNANMLLDTMLDL 409 (464)
Q Consensus 380 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 409 (464)
...|..|.+.-.. .|+-.++...+-+.++.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888888776554 49999999999888764
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.12 Score=44.27 Aligned_cols=155 Identities=12% Similarity=-0.047 Sum_probs=108.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc-CCCCC--hhhHHHHHHHHHhcCCh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY-GYSPS--VYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~ 145 (464)
+.-.|++.+|-..++++.... |.+.-++...=.++...|+...-...+++++.. +.... +.+...+.-++.+.|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345688888888888888764 556677777778888889988888888888764 22212 23334455566788999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM---RPDVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
++|++.-++..+.+ +.|....+++...+-..+++.++.++..+-...-- -.-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888765 45667777888888888999998887765443210 111222334455566778899999999
Q ss_pred HHH
Q 047873 223 HEM 225 (464)
Q Consensus 223 ~~~ 225 (464)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 764
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.30 E-value=0.74 Score=41.02 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCR---------GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
.|+.++|.+++..++.....+++.++..+...|-. ....++|...|.+.-+.. |+...-..++..+.-.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHc
Confidence 55555555555554444444455555555444321 123677777777776643 5544433333333333
Q ss_pred CCh----HHHHHHH---HH-HHhCCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 359 GDT----KTGFRLL---KE-MRSDGH---LPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 359 ~~~----~~a~~~~---~~-~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
|.. .+..++- .. +.+.|. ..+.-.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 321 1222222 11 112222 234445567888888899999999999999865
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.30 E-value=0.088 Score=48.46 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=108.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
+...-+|+++++.++.+.-. +++ .+ +....+.++..+.+.|..+.|+++-.. +
T Consensus 269 k~av~~~d~~~v~~~i~~~~----------ll~------~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~ 321 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN----------LLP------NI--PKDQGQSIARFLEKKGYPELALQFVTD---------P 321 (443)
T ss_dssp HHHHHTT-HHH-----HHHH----------TGG------G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H
T ss_pred HHHHHcCChhhhhhhhhhhh----------hcc------cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h
Confidence 34456999999888775211 000 11 135578888899999999999998643 2
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..-.....+.|+.+.|.++.+.. .+...|..|.....+.|+++-|.+.|.+.. -+..|+-.|
T Consensus 322 ---~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy 383 (443)
T PF04053_consen 322 ---DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLY 383 (443)
T ss_dssp ---HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHH
T ss_pred ---HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHH
Confidence 22345567789999998775432 478899999999999999999999998754 367788888
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
.-.|+.+...++.+.....|- ++....++.-.|+.++..+++.+..
T Consensus 384 ~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 899999998899888887762 4555566667788888888776653
No 244
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.36 Score=37.12 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=54.4
Q ss_pred cCCChhhHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH-----HHHHHhcCC
Q 047873 106 RTNLPTVTLGFYLEILDYGYSPSV-YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL-----INGHCKAKN 179 (464)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~ 179 (464)
..+..++|+.-|..+.+.|...-+ .............|+...|...|+++-... +.+....-+ .-.+...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt--~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT--SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC--CCcchhhHHHHHHHHHHHhcccc
Confidence 344455555555555544433111 111122233444555555555555554431 112222111 112334555
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
++......+.+-..+-+--...-..|.-+-.+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6655555555544332222333445555555666666666666665543
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1.4 Score=42.91 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=105.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
.-+..+.+...++-|+.+-+.- +.+++. .+....++.+.+.|++++|...|-+-...-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~--------------------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ--------------------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3345555566666666554331 333443 555566777788999999998876543321
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHH
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (464)
.| ..++.-+....+..+-...++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-...
T Consensus 399 -e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~ 468 (933)
T KOG2114|consen 399 -EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVET 468 (933)
T ss_pred -Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHH
Confidence 11 22445555556666667777788888876 66667789999999999888777766543 2211 112445
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
.+..+.+.+-.++|.-+-..... ....... .+-..+++++|++.+..+
T Consensus 469 al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 469 ALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 56666666666666665554432 2222222 233456777777776655
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.17 E-value=0.58 Score=43.88 Aligned_cols=175 Identities=17% Similarity=0.109 Sum_probs=115.5
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHhc----cCChHH
Q 047873 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV------AFTALISGFCR----GGKVVE 328 (464)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~ 328 (464)
..-+|.-+... +|| .+..++....=.|+-+.+++.+....+.+-.-.+. .|..++..++. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34445555443 333 34556666677789999999888876643111221 23344433333 457889
Q ss_pred HHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 329 AERMLREMLKVGLKPDDATYT-MVIDCFCKNGDTKTGFRLLKEMRSDG---HLPAVETYNALMNGLCKHGQLKNANMLLD 404 (464)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 404 (464)
|.++++.+.+. -|+...|. .-.+.+...|++++|++.|++..... .+.....+--+.+.+.-..+|++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999999886 36655443 33566778899999999999876531 12234456677888999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH-hcCCH-------HHHHHHHHh
Q 047873 405 TMLDLGVVPDDITYNILLEGHC-KHGNP-------EDFDKLQSE 440 (464)
Q Consensus 405 ~~~~~~~~p~~~~~~~l~~~~~-~~g~~-------~~a~~~~~~ 440 (464)
.+.+.+ ..+..+|..+..+|. ..|+. ++|.+++++
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 999753 334555555444433 66777 778888876
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.17 E-value=0.63 Score=42.46 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD-DITYNILLEGHC 426 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 426 (464)
..+..++.+.|+.++|.+.++++.+.... ........|+.++...+.+.++..++.+--+-..+.+ ...|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 45677788899999999999999875221 2344667899999999999999999988754322222 334555443333
Q ss_pred hcC
Q 047873 427 KHG 429 (464)
Q Consensus 427 ~~g 429 (464)
..|
T Consensus 343 av~ 345 (539)
T PF04184_consen 343 AVG 345 (539)
T ss_pred hhc
Confidence 333
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.012 Score=32.21 Aligned_cols=26 Identities=8% Similarity=0.025 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
+|+.|+++|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 58899999999999999999999965
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.10 E-value=0.02 Score=33.15 Aligned_cols=39 Identities=26% Similarity=0.148 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL 100 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 100 (464)
++..+...|.+.|++++|+++|+++.+.. |-+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45667777777777777777777777764 3344444443
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=1.4 Score=42.28 Aligned_cols=341 Identities=12% Similarity=0.137 Sum_probs=188.0
Q ss_pred HHHhcCChhHHHHHHHHH--------HhCCCCCChhcHH-----HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 68 VYVDLGFLDDAIQCFRLL--------RKHYFRIPARGCR-----CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
++.+..++++-..+.+.+ .+.|++.+.+-|. .++.-+...+.+..|+++-..+-..-.. ...+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHH
Confidence 455666666666655443 2446666655554 4566677889999999998877542222 2566777
Q ss_pred HHHHHHhcCCh--hhHHH-HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CCHHHHHHHHH
Q 047873 135 LMHKLCKEGKI--KDAQM-VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR----PDVYTYSALIN 207 (464)
Q Consensus 135 l~~~~~~~~~~--~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 207 (464)
...-+.+..+. +.+.+ +-+++... . .....|..+..-....|+++-|..+++.=...+.. .+..-+..-+.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 77777666432 12222 22233221 1 34567888888888899999999888753332211 01112233344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (464)
-+...|+.+-...++-.+... .+...+...++- ...|..+|.+..+.. +.. .+-..|..
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~~------------~p~a~~lY~~~~r~~---~~~---~l~d~y~q 613 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLRN------------QPLALSLYRQFMRHQ---DRA---TLYDFYNQ 613 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHh------------chhhhHHHHHHHHhh---chh---hhhhhhhc
Confidence 445556666555555555432 112222222211 125555555554421 111 11122222
Q ss_pred CCChHHHHHH-HHHHH----HcCCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHHHH-CCCCCCHhhHHHH
Q 047873 288 EGDLESALDI-RKEMI----KRGIELDNVAFTALISGFCRGGK----------VVEAERMLREMLK-VGLKPDDATYTMV 351 (464)
Q Consensus 288 ~~~~~~a~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~-~~~~~~~~~~~~l 351 (464)
..+...+-.+ ++... ..+..|+ .....+++.+... ..+-+.+.+.+.. .+..-...+.+--
T Consensus 614 ~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dT 690 (829)
T KOG2280|consen 614 DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDT 690 (829)
T ss_pred ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHH
Confidence 2222221111 11100 1122222 2333334443332 1111222222221 2223344566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047873 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
+.-+...|+..+|.++-.+.+ .||...|..-+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 777888899999988877765 3799999999999999999999888776653 255677788999999999
Q ss_pred HHHHHHHHhcCCCC
Q 047873 432 EDFDKLQSEKGLVS 445 (464)
Q Consensus 432 ~~a~~~~~~~~~~p 445 (464)
++|.++..+.+-.+
T Consensus 761 ~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 761 DEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHhhhhhccCChH
Confidence 99999998754333
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.07 E-value=0.58 Score=37.56 Aligned_cols=166 Identities=12% Similarity=-0.024 Sum_probs=101.4
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+.|+- .++|-+.--+...|+++.|.+.|+...+.++. ...+...-.-.+---|++.-|.+-+....+..+. |+.-
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR- 169 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DPFR- 169 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCC-ChHH-
Confidence 567777 89999999999999999999999999988733 3334333333455678999998877777765543 3321
Q ss_pred HHHHHHHHhcCChhhHHHHH-HHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC------CCCHHHHHHH
Q 047873 133 NVLMHKLCKEGKIKDAQMVF-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM------RPDVYTYSAL 205 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 205 (464)
...+..--..-++.+|..-+ ++... .|..-|...|-.+.- |.+ ....++++++.... +.-..||--+
T Consensus 170 ~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 170 SLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 11121222334556665533 33333 244455444433322 211 12233344332211 1124567778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047873 206 INGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
...+...|+.++|..+|+-....
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 88899999999999999988765
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.04 E-value=1.3 Score=41.38 Aligned_cols=355 Identities=11% Similarity=0.040 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHH-cCCChhhHHHHHHHHHhc-CCC-CChhhHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM-RTNLPTVTLGFYLEILDY-GYS-PSVYVFNVLM 136 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~ 136 (464)
.-|-..+..=.+.|..+.+.++|++.+.. ++.+...|......+. ..|+++.....|+.+... |.. .+...|...+
T Consensus 80 gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyi 158 (577)
T KOG1258|consen 80 GYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYI 158 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHH
Confidence 56667777777888888888888887765 4566666665554433 457777777777777653 221 2456777777
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH---h------cCChhHHHHHHHHHh----------------
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC---K------AKNLDEGFRLKSVME---------------- 191 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~------~~~~~~a~~~~~~~~---------------- 191 (464)
..-..++++.....+++++.+.. ..-++..-.-|. . ....+++.++-....
T Consensus 159 e~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~ 234 (577)
T KOG1258|consen 159 EFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELE 234 (577)
T ss_pred HHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHH
Confidence 77777788888888888776541 111111111111 1 112222222211111
Q ss_pred ----hCCCCCC-H--HHHHHHH-------HHHHhcCChhHHHHHHHHHHHCC---CC----CCHHHHHHHHHHHHhcCCc
Q 047873 192 ----GSGMRPD-V--YTYSALI-------NGLCKENRLDDAELLLHEMCERG---LT----PNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 192 ----~~~~~~~-~--~~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~ 250 (464)
..+ .|. . ...+.+. .++-..-...+....|+.-.+.. +. ++..+|..-+..-...|+.
T Consensus 235 ~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 235 IGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred HHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 011 111 0 0111111 12222223333444444444331 12 2345666666666666655
Q ss_pred ccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 047873 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330 (464)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (464)
+.+.-+|++..-.-- .=...|-..+.-....|+.+-+..++....+-..+-.+.+--.-....-..|++..|.
T Consensus 314 ------~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 314 ------SRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred ------HHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 588888887753211 1122344444445555888888888877776544433333222233344568999999
Q ss_pred HHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHH---HHHHHHHhCCCCcCHHHHHHHHHH-----HHhcCCHHHHHH
Q 047873 331 RMLREMLKVGLKPDDA-TYTMVIDCFCKNGDTKTGF---RLLKEMRSDGHLPAVETYNALMNG-----LCKHGQLKNANM 401 (464)
Q Consensus 331 ~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~ 401 (464)
.+++.+...- |+.. .-..-+....+.|..+.+. .++....... -+......+.-- +.-.++.+.|..
T Consensus 387 ~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 387 VILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998763 4432 2233345556777777777 3333333321 122222222222 233678999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047873 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432 (464)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 432 (464)
++.++.+. ++++...|..++..+...+...
T Consensus 463 ~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 463 ILLEANDI-LPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHhhhc-CCccHHHHHHHHHHHHhCCcch
Confidence 99999875 5667888888888877666433
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.03 E-value=0.74 Score=38.44 Aligned_cols=165 Identities=16% Similarity=0.025 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHH-HHHcCCChhhHHHHHHHHHhcCC--CCChhhHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID-RMMRTNLPTVTLGFYLEILDYGY--SPSVYVFNVLM 136 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 136 (464)
..+......+...+++..+.+.+.........+ ......... .+...|+++.+...+.+...... ......+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 444445555555555555555555554432111 111112222 44555555555555555543211 01222222233
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENR 214 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 214 (464)
..+...++.+.+...+....... +. ....+..+...+...++++.+...+....... |+ ...+..+...+...+.
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGR 251 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCC
Confidence 33444555555555555554432 11 23344444455555555555555555554431 21 2222233333334444
Q ss_pred hhHHHHHHHHHHHC
Q 047873 215 LDDAELLLHEMCER 228 (464)
Q Consensus 215 ~~~a~~~~~~~~~~ 228 (464)
.+.+...+......
T Consensus 252 ~~~~~~~~~~~~~~ 265 (291)
T COG0457 252 YEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.02 E-value=0.22 Score=45.91 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=103.1
Q ss_pred HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 047873 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354 (464)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (464)
..-.+.++..+.+.|.++.|+.+..+-.. -.....+.|+++.|.++.++ ..+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 34578888888999999999987654322 23445788999999887544 2477899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047873 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 434 (464)
..+.|+++-|.+.|.+..+ +..++-.|.-.|+.+...++.+.....|- ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 9999999999999987754 56677788889999888888888776542 45556666778999999
Q ss_pred HHHHHhcCCCCchhH
Q 047873 435 DKLQSEKGLVSDYAC 449 (464)
Q Consensus 435 ~~~~~~~~~~p~~~~ 449 (464)
.+++.+.|.-|....
T Consensus 422 v~lL~~~~~~~~A~~ 436 (443)
T PF04053_consen 422 VDLLIETGRLPEAAL 436 (443)
T ss_dssp HHHHHHTT-HHHHHH
T ss_pred HHHHHHcCCchHHHH
Confidence 999888776665433
No 255
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.01 E-value=0.37 Score=45.21 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=22.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.+...+.+...+..|-++|.+|-. ...+++.....++|.+|+.+-+...
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc
Confidence 333334444444455555544432 1233444455555555555555444
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.98 E-value=0.75 Score=38.16 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=33.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGI--ELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
+.+.|.+.|.+-.|..-++.+++.-. ......+-.+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44556677777777777777766511 11123444555666666666666665554443
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.52 Score=44.17 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHh
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSK 36 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 36 (464)
..++....=.|+-+.+++++.+..+.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 34455555677777777777776543
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.87 E-value=0.32 Score=35.40 Aligned_cols=92 Identities=12% Similarity=-0.079 Sum_probs=63.3
Q ss_pred HHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc---HHHHHHHHHhcC
Q 047873 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS---FNTLINGHCKAK 178 (464)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 178 (464)
.++...|+.+.|++.|.+.+..-++ ..+.||.-.+++.-.|+.++|+.=+++..+..-..+... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888888876555 778888888888888888888887777766422223222 333344566677
Q ss_pred ChhHHHHHHHHHhhCC
Q 047873 179 NLDEGFRLKSVMEGSG 194 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~ 194 (464)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777766554
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.83 E-value=1.1 Score=38.82 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=82.1
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHH-------HHHHHHhcC-ChhHHHHHHHHHHHC--------CCCCC-----
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSA-------LINGLCKEN-RLDDAELLLHEMCER--------GLTPN----- 233 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 233 (464)
.+.|+++.|..++.+........++..... ++......+ +++.|..++++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 356667777777666654321112222222 222233445 777776666655432 11222
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
..+...++.+|...+..+ ..++|..+++.+...... ....+..-+..+.+.++.+.+.+++.+|+..-.. ....+
T Consensus 84 ~~iL~~La~~~l~~~~~~---~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYE---SVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChH---HHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchH
Confidence 234555666676666543 455677777766554322 2334444455555677777777777777765221 22333
Q ss_pred HHHHHHH---hccCChHHHHHHHHHHHHCCCCCCH
Q 047873 314 TALISGF---CRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 314 ~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
...+..+ ... ....|...+..+....+.|..
T Consensus 159 ~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3333333 222 234555555555544334433
No 260
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=95.81 E-value=2.1 Score=41.86 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCh-------hhHHHHHHHHHhcCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP-------TVTLGFYLEILDYGY 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~ 125 (464)
.+|- ++-.+.++|.+++|.++....... .......+...+..+....+. ++...-|++..+...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 5555 556678999999999999554433 234455677777777654222 344555666655443
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.79 E-value=1.1 Score=39.07 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhCCC-
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL---NPDKITYTILLDGFCKEGD- 290 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 290 (464)
+++.+.+++.+.+.|+.-+..+|-+...........+.......+..+|+.|.+..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 345667888888888887776665544333332222223345789999999988642 2444556655433 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCC--hHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 047873 291 ---LESALDIRKEMIKRGIELDN--VAFTALISGFCRGGK--VVEAERMLREMLKVGLKPDDATYTMVIDC 354 (464)
Q Consensus 291 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (464)
.+.++.+|+.+.+.|+..+. ...+.++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34556777777776765443 333444433332222 44788888888888888777776655443
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.35 Score=41.48 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHHHHH
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERM 332 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 332 (464)
.+|-..++++.+. .+.|...+...-.+|.-+|+...-...++++... ..+|. ..-..+..++...|-+++|++.
T Consensus 120 h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~ 197 (491)
T KOG2610|consen 120 HEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQ 197 (491)
T ss_pred cHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHH
Confidence 4777788888775 4557777888888899999999999999988866 12233 2333445556789999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047873 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD---GHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 406 (464)
-++..+.+ +.|..........+...|++.++.++..+-... +...-...|....-.+...+.++.|+++|+.-
T Consensus 198 A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 198 ADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99998876 557777778888888889999998887665443 11111233555555667778999999999653
No 263
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.67 E-value=0.18 Score=39.78 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
..-++-++.+|++++|..-|..++..-. +.+ .......|..-..++.+.+.++.|++-..+..+.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp--~~~-----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~- 164 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCP--STS-----------TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN- 164 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCc--ccc-----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-
Confidence 3345556667777777777776663100 000 00011334444556666677777776666666654
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
|....+...-..+|.+...+++|++=|.++++..
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 2223344444555666666666666666666644
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.63 E-value=0.7 Score=35.09 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
..++..+.+.+.+.....+++.+...+. .+....+.++..|++.+ ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455566666677777777777776653 46667777777776553 2333444432 12333444566666666
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH-GQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
+-++++.-++.++.. . ...+..+... ++++.|.+++++ ..++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666666655532 1 1222223333 566666666654 125556666665554
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.62 E-value=0.74 Score=35.28 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=13.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
-...+.+.|+|.+|+.+|+.+...
T Consensus 50 ~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 50 DGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334455566666666666665544
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=95.57 E-value=1.8 Score=39.48 Aligned_cols=162 Identities=11% Similarity=0.043 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHh---------CCChHHHHHHHHHHHHcCC
Q 047873 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPD-KITYTILLDGFCK---------EGDLESALDIRKEMIKRGI 306 (464)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~ 306 (464)
...+.+.....+.. ..+.+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+.
T Consensus 257 d~ylrg~~~~~~~t-~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFT-PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 45555554433322 23456888888888721 23444 3344444433322 1224455566666666655
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHH
Q 047873 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA---VETY 383 (464)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 383 (464)
. |+.....+..+..-.++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..+. .|. ....
T Consensus 336 ~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~ 411 (458)
T PRK11906 336 V-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVI 411 (458)
T ss_pred C-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHH
Confidence 4 67777777766677777788888888777764 223455555555566677788888877776654 222 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 047873 384 NALMNGLCKHGQLKNANMLLDT 405 (464)
Q Consensus 384 ~~l~~~~~~~g~~~~a~~~~~~ 405 (464)
...+..|+.. ..++|++++-+
T Consensus 412 ~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 412 KECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHcCC-chhhhHHHHhh
Confidence 2223344443 45666666533
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.8 Score=35.35 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=75.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCC
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY---VFNVLMHKLCKEGK 144 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 144 (464)
+.+.++.++|+..|..+...|... +.-............|+...|+..|.++-.....|-+. .-..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 455677777887777777765321 12223334455667777777888887777655444433 11122334566777
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
++....-.+-+...+-+.-...-..|.-+-.+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777777776655443333334456666666788888888888777653
No 268
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.55 E-value=0.025 Score=30.41 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
+.+|..++.+|...|++++|++.|+++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 46899999999999999999999999984
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=1.3 Score=37.62 Aligned_cols=148 Identities=5% Similarity=-0.074 Sum_probs=100.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
.......|++.+|...|....... +-+......++.+|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678899999999999998876 4456778889999999999999999998876543222222323345555566666
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChh
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLD 216 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 216 (464)
.+...+-...-.. +-|...-..+...+...|+.+.|++.+-.+.+.. -.-|...-..++..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 6555555555443 3366677788888999999999998776665431 1234445556666666655433
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.34 E-value=1.7 Score=37.66 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=100.5
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCC-----hhcHHHHHHHHHcCC-ChhhHHHHHHHHHhc----C----CCCCh----
Q 047873 70 VDLGFLDDAIQCFRLLRKHY--FRIP-----ARGCRCLIDRMMRTN-LPTVTLGFYLEILDY----G----YSPSV---- 129 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~--~~~~-----~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~~---- 129 (464)
.+.|+.+.|...+.++.... ..|+ ...+...+..+.+.+ +++.|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46799999999999887643 1222 122334444555667 999998888876553 1 22232
Q ss_pred -hhHHHHHHHHHhcCChhh---HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 130 -YVFNVLMHKLCKEGKIKD---AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 130 -~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
.++..++.++...+..+. |.++++.+... .+-.+.++..-+..+.+.++.+.+.+.+.+|...- .-....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 345667778888777654 55566666444 22235666677788888899999999999998762 2133445555
Q ss_pred HHHHHh--cCChhHHHHHHHHHHHCCCCCCH
Q 047873 206 INGLCK--ENRLDDAELLLHEMCERGLTPND 234 (464)
Q Consensus 206 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 234 (464)
+..+.. ......+...+..+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 554422 22335666666666655444444
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.32 E-value=0.9 Score=34.47 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=17.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 106 (464)
++..+...+........++.+...+ +.+...++.++..+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333444444445555555444443 2333344444444443
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.21 Score=39.26 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=57.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
.+...+...|++++|+.-++....... .....+-..+.+.....|.+++|+.+++.....+. .......-..++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 345567777777877777776654310 01122234455666777777777777776655332 23334455667777
Q ss_pred cCChhhHHHHHHHHhhCC
Q 047873 142 EGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~ 159 (464)
.|+-++|..-|......+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 788777777777776653
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.25 E-value=0.015 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 80 (464)
...|++ .+|+.+...|...|++++|++
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 456777 999999999999999999863
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.20 E-value=1.5 Score=40.15 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 047873 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALI 206 (464)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 206 (464)
..+-..+..++.+.|+.++|.+.+.+|.+.. ...+..+...|+.++...+.+.++..++.+-.+...+. -...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4444567777788899999999999887652 11233466788889999999999999988876543222 233455443
No 275
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.14 E-value=0.034 Score=29.81 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
+..|..++.++...|++++|++.|++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999984
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.06 E-value=3.1 Score=39.10 Aligned_cols=389 Identities=12% Similarity=0.079 Sum_probs=219.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+...|..++.--....+.+.+..++..+...- |.----|......=.+.|..+.+..+|++.+. +++.+...|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 34677777765555556677777888887663 32233455566666688999999999999987 45567778877666
Q ss_pred HHHh-cCChhhHHHHHHHHhhC-CCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---
Q 047873 138 KLCK-EGKIKDAQMVFDEFGKR-GLH-ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK--- 211 (464)
Q Consensus 138 ~~~~-~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 211 (464)
.+.. .|+.+.....|+..... |.. .+...|...|..-...+++.....+|++.++. | ...|+..-.-|.+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHh
Confidence 5554 57778888888887654 322 24556788888888889999999999998753 1 1122221111111
Q ss_pred ------cCChhHHHHHHHHHHH--------------------CC-CCCC-HHHHHHHHHHHHhcCCc-ccccCHHHHHHH
Q 047873 212 ------ENRLDDAELLLHEMCE--------------------RG-LTPN-DVIFTTLIDGHCKNGRI-DMAGDMKEARKI 262 (464)
Q Consensus 212 ------~~~~~~a~~~~~~~~~--------------------~~-~~~~-~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~ 262 (464)
....+++.++-..... .+ ..+. ....+.+-..+....+. ............
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1112222222222111 10 0010 01111111111110000 000001222333
Q ss_pred HHHHHhCC---C----CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047873 263 VDEMCTNG---L----NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 263 ~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
|+.-+.+- + +++..+|..-+..-...|+.+.+.-+|+...-.-.. -...|-..+......|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 33333221 1 224457788888888999999999999888754211 335566666666666999999888887
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCC
Q 047873 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE-TYNALMNGLCKHGQLKNAN---MLLDTMLDLGV 411 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~ 411 (464)
..+-.++-.+.+-..-....-..|++..|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++......
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-- 432 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-- 432 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--
Confidence 766543322222222222233468999999999999987 3 5432 2223345556778888777 444444332
Q ss_pred CCCHHHHHHHHH-----HHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHhhccc
Q 047873 412 VPDDITYNILLE-----GHCKHGNPEDFDKLQSE-KGLVSD-YACYTSLVSKS 457 (464)
Q Consensus 412 ~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~ll~~~ 457 (464)
..+..+...+.- .+.-.++.+.|..++.+ ..+.|+ ...|-.+++.+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 223222222222 23346788889998887 455554 55555555443
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.04 E-value=0.31 Score=40.74 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCCh
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (464)
+-+++++++|...|+.||..+-..++.++.+.+-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 46788899999999999999988889888776653
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.84 E-value=0.92 Score=39.54 Aligned_cols=229 Identities=13% Similarity=0.111 Sum_probs=99.9
Q ss_pred HHhcCChhhHHHHHHHHhhCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCC---HHHHHHHHHHHHh
Q 047873 139 LCKEGKIKDAQMVFDEFGKRG--LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS--GMRPD---VYTYSALINGLCK 211 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 211 (464)
+...++.++|+..+.+...+- ...-..++..+..+.++.|.+++++..--.-++. ..... ...|..+.+.+-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667776666554431 0111234555566666666666655432211110 00111 1223333334444
Q ss_pred cCChhHHHHHHHHHHHC-CCCC-CH--HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-----CCCCHHhHHHHH
Q 047873 212 ENRLDDAELLLHEMCER-GLTP-ND--VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-----LNPDKITYTILL 282 (464)
Q Consensus 212 ~~~~~~a~~~~~~~~~~-~~~~-~~--~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~ 282 (464)
.-++.+++.+-..-... |..| .. .....+..++...+ .++++++.|+.....- ......++..+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls------~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS------VFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH------HHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 44444444443333333 1111 01 11122222333322 2456666666654321 111223456666
Q ss_pred HHHHhCCChHHHHHHHHHHHHc----CCCCCHHHH-----HHHHHHHhccCChHHHHHHHHHHHH----CCCCC-CHhhH
Q 047873 283 DGFCKEGDLESALDIRKEMIKR----GIELDNVAF-----TALISGFCRGGKVVEAERMLREMLK----VGLKP-DDATY 348 (464)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~ 348 (464)
..|.+..++++|.-+..+..+. ++.--...| ..|..++...|...+|.+.-++..+ .|-++ -....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 6666666666666554443321 221111112 2233345555666666665555433 22111 12233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
..+.+.|...|+.+.|+.-|+....
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHH
Confidence 4455666666666666666655544
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.77 E-value=0.55 Score=37.25 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA--VETYNALMNGLCKHGQLKNANMLLDTMLDL---GVVPDDITYNIL 421 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l 421 (464)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.++... +-.++...--.+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666667777777777777777666532222 334555666666677777776666665432 111111111111
Q ss_pred HH--HHHhcCCHHHHHHHHHh
Q 047873 422 LE--GHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 422 ~~--~~~~~g~~~~a~~~~~~ 440 (464)
.. ++...+++.+|.+.+-+
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 11 23356778777776654
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.74 E-value=1.6 Score=38.14 Aligned_cols=166 Identities=10% Similarity=-0.020 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC-----CCChh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH-YFRI---PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY-----SPSVY 130 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 130 (464)
+++..+.+++-+..++.+++.+-..-... |..+ .-.....+..+....+.++++++.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 56666777777777777777776554333 1111 123345566777778889999999988776321 12345
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCCCcc-cHH-----HHHHHHHhcCChhHHHHHHHHHhh----CCCC
Q 047873 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKR----GLHATAV-SFN-----TLINGHCKAKNLDEGFRLKSVMEG----SGMR 196 (464)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 196 (464)
++..|...|....|+++|.-+..+..+. ++. |.. -|. .+.-++...|.+..|.+.-++..+ .|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 6788888899999988887665544321 211 111 122 233355567888778777766543 3322
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 197 P-DVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 197 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+ .......+.+.|...|+.+.|..-|++..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 12334567778888899888888777654
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.63 E-value=1.3 Score=32.58 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=68.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 047873 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+. .|. ...|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 3466667777766666542 3334444443333333333333444333221 121 12333333333
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+-.+- .+.......+..+...|+-+.-.++++.+.+. -.+++..+..+..||.+.|+..++.+++++
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 332221 24445566777788888888888888887653 467888888888888888888888888876
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.61 E-value=0.4 Score=40.69 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-----cCCCCChhhHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-----YGYSPSVYVFNV 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 134 (464)
.++..++..+..+|+++.+...++.+...+ |-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467778888888899999999999888887 66788888999999999999999888887654 578888887776
Q ss_pred HHHHH
Q 047873 135 LMHKL 139 (464)
Q Consensus 135 l~~~~ 139 (464)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.51 E-value=3 Score=36.35 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--c----CChHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCC---
Q 047873 293 SALDIRKEMIKRGIELDNVAFTALISGFCR--G----GKVVEAERMLREMLKVGL---KPDDATYTMVIDCFCKNGD--- 360 (464)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~--- 360 (464)
+...+++.+.+.|+.-+..+|.+....... . ....+|..+++.|++... .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344566677777766555555443222222 1 234567777777776531 1233344444333 2222
Q ss_pred -hHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 361 -TKTGFRLLKEMRSDGHLPAV--ETYNALMNGLCKHGQ--LKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 361 -~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
.+.+..+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35556667777766555432 222333332222222 335667777777777776666555443
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.35 E-value=0.049 Score=29.32 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARD 28 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 28 (464)
-|.++.+|+.|+.+|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37899999999999999999999963
No 285
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.33 E-value=0.48 Score=39.68 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=27.5
Q ss_pred CHHhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047873 274 DKITYTILLDGFCK-----EGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322 (464)
Q Consensus 274 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (464)
|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|..|++.+-+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 44555555555543 23444445555666666666666666666666543
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.33 E-value=0.1 Score=28.49 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
|..|..+|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777643
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.10 E-value=0.83 Score=38.86 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCcCHHHHHHH
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLPAVETYNAL 386 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l 386 (464)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+. |+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555555666666666666665554 345555666666666666666666666555442 555555544444
Q ss_pred HHH
Q 047873 387 MNG 389 (464)
Q Consensus 387 ~~~ 389 (464)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.99 E-value=1.2 Score=35.36 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-ChhhHHH--
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-SVYVFNV-- 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-- 134 (464)
..+..++..|.+.|+.++|++.|.++......+. ...+..+++.....+++..+.....++...-... |....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5777888889999999999999999877653333 4567788888888899988888877765432111 2222221
Q ss_pred H--HHHHHhcCChhhHHHHHHHHhh
Q 047873 135 L--MHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 135 l--~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. .-.+...+++..|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1224457888888888876643
No 289
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.94 E-value=7 Score=38.43 Aligned_cols=172 Identities=12% Similarity=0.046 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLV-AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
...++-.++.+|. .-.+++.|...+++.+.-... . +...-. ..-..++..+.+.+... |...++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~----------~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~ 123 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER---H----------RLTDLKFRCQFLLARIYFKTNPKA-ALKNLD 123 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---c----------chHHHHHHHHHHHHHHHHhcCHHH-HHHHHH
Confidence 3455666777777 688899999999987632110 0 000000 22345567777776655 888888
Q ss_pred HHHhCCCC----CChhcHHHH-HHHHHcCCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hcCChhhHHHHHH
Q 047873 84 LLRKHYFR----IPARGCRCL-IDRMMRTNLPTVTLGFYLEILDYG---YSPSVYVFNVLMHKLC--KEGKIKDAQMVFD 153 (464)
Q Consensus 84 ~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~ 153 (464)
+..+.--. +-...|..+ +..+...+++..|.+.++.+...- ..|...++..++.+.. ..+..+.+.+.++
T Consensus 124 ~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~ 203 (608)
T PF10345_consen 124 KAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQ 203 (608)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 86554211 222333433 233334479999999998877543 2233444445554443 4455677777776
Q ss_pred HHhhCC---------CCCCcccHHHHHHHHH--hcCChhHHHHHHHHHh
Q 047873 154 EFGKRG---------LHATAVSFNTLINGHC--KAKNLDEGFRLKSVME 191 (464)
Q Consensus 154 ~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 191 (464)
.+.... -.|...+|..+++.++ ..|++..+.+.++.+.
T Consensus 204 ~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 204 RAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 663321 1234456666666554 5777777776665553
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.90 E-value=2.4 Score=33.01 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
+.++.+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+.. .+..+.++=-.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 34444555566666666666666666666654433333 33333444443333322221 222222222222221
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
=...+..++..+...|++-+|.++.+..... +......++.+-.+.+|..-
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHH
Confidence 0012445556666667777776666554211 11122334555555555544
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=7.5 Score=38.27 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
...+.-+.+.|++++|...|-+.+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHc
Confidence 344566778999999999999887
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.68 E-value=0.18 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
..+++.|...|...|++++|++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 56899999999999999999999999873
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=7.6 Score=37.90 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=61.3
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL---PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
=+.+++.+++|+++-+... |..| ...++..++..+.-.|++++|-...-+|...
T Consensus 365 Wll~~k~yeeAl~~~k~~~-------------------~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---- 421 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI-------------------GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---- 421 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc-------------------CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----
Confidence 3556777888887766554 4444 2367777788888888888888877776654
Q ss_pred ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 93 PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
+...|...+..+...++......+ +.......++..|..++..+..
T Consensus 422 ~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 422 NAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 344566666666665554433222 2222222456677777766665
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=2.1 Score=40.11 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=107.0
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcH
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 97 (464)
.-+|+++.|..++-.+. ....+.++..+.++|..++|+++-- |+..
T Consensus 597 vmrrd~~~a~~vLp~I~------------------------k~~rt~va~Fle~~g~~e~AL~~s~---------D~d~- 642 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP------------------------KEIRTKVAHFLESQGMKEQALELST---------DPDQ- 642 (794)
T ss_pred hhhccccccccccccCc------------------------hhhhhhHHhHhhhccchHhhhhcCC---------Chhh-
Confidence 35788888877554432 3456677888888898888887632 2211
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (464)
-.....+.|+.+.|.++..+. .+..-|..|..+....+++..|.+.|.... -|..|+-.+...
T Consensus 643 --rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~ 705 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSS 705 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhc
Confidence 223445678888888876654 367788999999999999999999887654 356677777788
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 178 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
|+-+....+-....+.|. .| .-..+|...|+++++.+++..-.
T Consensus 706 g~~~~l~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 706 GNAEGLAVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred CChhHHHHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 887776666666766662 22 23345777899998888877653
No 295
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=92.72 E-value=10 Score=36.86 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
....+.+..+-+-.+......++..|.+.|-.+.+.++.+.+-.+-. ...-|..-+..+.+.|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444433334455566666777777777777766665544322 22344444555555555555444444443
No 296
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.66 E-value=6 Score=35.15 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKM------------HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVY 69 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 69 (464)
-|.|+.+|-.++...-..-. .+.-+.+|++++ +. .|+. ..+..++..+
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL----------------~~---np~~~~L~l~~l~~~ 75 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERAL----------------KH---NPDSERLLLGYLEEG 75 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH----------------Hh---CCCCHHHHHHHHHHH
Confidence 46789999888876554322 223334444444 32 4444 8888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc---CCChhhHHHHHHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR---TNLPTVTLGFYLEIL 121 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 121 (464)
.+..+.++..+-++++.... +-+...|...+..... .-.+.....+|.+.+
T Consensus 76 ~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 76 EKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88888888888888888775 3356667766655443 234555666665544
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.35 E-value=4.3 Score=31.63 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
+.+..+...+++++...+..++..+.+.|++....+++ ..++-+|.......+-.+ .+....+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 33444555566666667777777777777655544333 333334444333222111 22334444444444332
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
=...+..++..+...|++-+|.++.+..... +......++.+....+|...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113455666666777777777766654321 111223344555555554444444444433
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.14 E-value=4.1 Score=30.83 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
...+...|+|++|+.+|+.+...
T Consensus 51 g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 51 GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHcCCHHHHHHHHHhhhcc
Confidence 33455566666666666665554
No 299
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.02 E-value=0.51 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
.+|..++.+|...|++++|.+.|+++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999984
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.85 E-value=14 Score=36.42 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (464)
..--....+....|+.++|......+-..| ...+..+..++..+.+.|....
T Consensus 130 ~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 130 EARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCH
Confidence 555566666777777777766666666555 3345566777766665555443
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.77 E-value=1.7 Score=33.96 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC-----------hhH
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF-----------LDD 77 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-----------~~~ 77 (464)
|..-+--+++-.+..++.++++.++++ +...+ .+.|+. .++..+..+|...+. +++
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK---------~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISK---------FEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHH---------HHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHH---------HHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 333333444455555666666666532 33333 457777 788888888766543 334
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 78 AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 78 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
|.+.|++.... .|+...|+.-+... .+|-+++.++.+.+
T Consensus 99 A~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 99 ATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 44444444444 35666666665554 24555555555544
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.72 E-value=2.3 Score=33.89 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=9.9
Q ss_pred HHHhcCChhHHHHHHHHHhh
Q 047873 173 GHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~ 192 (464)
+|.+...+++|+.-|..+..
T Consensus 177 ayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 44444455555555555444
No 303
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.68 E-value=0.6 Score=40.24 Aligned_cols=53 Identities=8% Similarity=-0.063 Sum_probs=25.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+-|+++|.|++|++.|.+.+ ...| +...+..-..+|.+..++..|..-.....
T Consensus 105 N~yFKQgKy~EAIDCYs~~i-------------------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI-------------------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhh-------------------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555555555555544 3334 22444444555555555554444444433
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.16 E-value=12 Score=34.35 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=72.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+-.|+...+... .+...|+++.+.+.+...... +.....+...+++...+.|++++|...-+-|+...++ ++....
T Consensus 320 ~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~ 395 (831)
T PRK15180 320 QQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLT 395 (831)
T ss_pred CCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhhee
Confidence 334444333333 345679999999988766543 2334567888999999999999999999999988777 666655
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
......-..|-++++.-.+.++...+
T Consensus 396 iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 396 VAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred eecccHHHHhHHHHHHHHHHHHhccC
Confidence 55555566778888888888876554
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.16 E-value=5.7 Score=30.59 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHH-HHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFN-TLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
-...++.+.+..+++.+... .|...... .-...++..|+|.+|..+|+.+...
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 33455666666666665543 23322222 1223345566666666666665544
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.15 E-value=0.69 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.06 E-value=1.2 Score=30.49 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
.=+..+-++.+......|++....+.+++|.+.+++..|.++|+-.+.. ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3345555666666667788888888888888888888888888766632 122344555443
No 308
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.84 E-value=9.2 Score=32.42 Aligned_cols=137 Identities=9% Similarity=0.054 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-------LVLDALMIVYVDLGFLDD 77 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~ 77 (464)
+-+.-...-...+.-+.+|..|++..++.++.-+.. .. .-++.. ..-..=|.++...|+|.+
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~---------a~--~ee~~~~~~evK~sLcvvGIQALAEmnrWre 101 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASD---------AD--AEEPAGSSLEVKCSLCVVGIQALAEMNRWRE 101 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------cc--ccccccchhhhhhhhhhhhHHHHHHHhhHHH
Confidence 333444445556667788888888888776432100 00 000000 011122445666666666
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-----hcCChhhHHHHH
Q 047873 78 AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC-----KEGKIKDAQMVF 152 (464)
Q Consensus 78 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 152 (464)
++.+.-+.-+..-..++.....-|-.|.+.+.+..+.++-..-++.-...+..-|.+++..|. -.|.+++|+++.
T Consensus 102 VLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 102 VLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 665544333222122344444445556666666666655555444322222333444444333 346666666555
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.74 E-value=5.4 Score=32.01 Aligned_cols=77 Identities=18% Similarity=0.061 Sum_probs=46.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD---LGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
+.|+ +.|.+.|-.+...+..-++...-.+...|. ..+.+++..++-+..+ .+-.+|+..+.+|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 566666666666544445555555554444 4566777777666653 2235667777777777777777776
Q ss_pred HH
Q 047873 434 FD 435 (464)
Q Consensus 434 a~ 435 (464)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.71 E-value=0.59 Score=24.77 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
+|..+...+...|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 56667777888888888888888776653
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.57 E-value=20 Score=35.85 Aligned_cols=229 Identities=15% Similarity=0.069 Sum_probs=123.6
Q ss_pred HHHHcCCChhhHHHHHHHHHhcCCCCChh-------hHHHHH-HHHHhcCChhhHHHHHHHHhhC----CCCCCcccHHH
Q 047873 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVY-------VFNVLM-HKLCKEGKIKDAQMVFDEFGKR----GLHATAVSFNT 169 (464)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 169 (464)
-......++.+|..+..++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 34456788899988888877644333322 222222 2344578889998888776554 11223445666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH-----HHHHHhcCCh--hHHHHHHHHHHHCC---CC---CCHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL-----INGLCKENRL--DDAELLLHEMCERG---LT---PNDVI 236 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~ 236 (464)
+..+..-.|++++|..+.....+..-.-+...+..+ ...+...|+. .+.+..|....... .+ +-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777778889999999888776644222333333322 2335556743 33334444433321 01 12234
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhCCChHHHHHHHHHHHHcCCC----CCH
Q 047873 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT--YTILLDGFCKEGDLESALDIRKEMIKRGIE----LDN 310 (464)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 310 (464)
+..+..++.+.. +...++..-++-.......|-... +..|+......|++++|...++++...... ++.
T Consensus 583 r~~ll~~~~r~~-----~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 583 RAQLLRAWLRLD-----LAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHHHh-----hhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 444555554421 111233333333222222232222 236788888999999999998888765332 222
Q ss_pred HHHHHHHH--HHhccCChHHHHHHHHH
Q 047873 311 VAFTALIS--GFCRGGKVVEAERMLRE 335 (464)
Q Consensus 311 ~~~~~l~~--~~~~~~~~~~a~~~~~~ 335 (464)
.+-...+. .....|+...+...+.+
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222 23456788777776665
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.41 E-value=5.2 Score=36.56 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 361 (464)
|.--...|+.-.|.+-+...++.... ++.........+...|+++.+...+...... +.....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344556666665544444433221 2333333334456677777777776655432 223445666777777777777
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
+.|...-..|....+. ++.........-...|-++++.-.|++....
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7777777777666544 4554444444445566677777777776643
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.40 E-value=8.8 Score=36.31 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMR 372 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (464)
.-|..|..+..+.+++..|.+.|.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344455555555555555555544443
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.28 E-value=0.55 Score=24.64 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSK 36 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 36 (464)
++..++.++...|++++|.+.|++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667888999999999999999999854
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.28 E-value=3.8 Score=32.88 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD---GHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
+.|...|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333444444444333 45556666666555544 2245566666666666666666555
No 316
>PRK09687 putative lyase; Provisional
Probab=90.17 E-value=12 Score=32.51 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHH
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL----DDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
++..+....+.++...|. +.+...+..+.. .++...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344455555555554443 223333333322 22444444444444555442 2344444444222 2344444
Q ss_pred HHHHHHHHhc
Q 047873 238 TTLIDGHCKN 247 (464)
Q Consensus 238 ~~l~~~~~~~ 247 (464)
...+.++...
T Consensus 109 ~~A~~aLG~~ 118 (280)
T PRK09687 109 ASAINATGHR 118 (280)
T ss_pred HHHHHHHhcc
Confidence 4444444443
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.99 E-value=2 Score=29.87 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
...-+..+...++.|++.+..+.+.+|.+.+++..|.++|+.++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444443
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.85 E-value=9.5 Score=31.02 Aligned_cols=201 Identities=16% Similarity=0.059 Sum_probs=104.3
Q ss_pred HHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC
Q 047873 50 LETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127 (464)
Q Consensus 50 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 127 (464)
+.+.+..++. .....-...|-..|-+.-|+--|....... |--+.+|+.++--+...|+++.|.+.|+...+..+.-
T Consensus 54 L~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 54 LASRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred HHhccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 3333444444 233333444555566666666666555543 2236678888888888888888888888888766542
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH-HHHHHhcCChhHHHH-HHHHHhhCCCCCCHHHHHH-
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL-INGHCKAKNLDEGFR-LKSVMEGSGMRPDVYTYSA- 204 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~- 204 (464)
+-...|.-+ ++---|++.-|.+=|...-+.+ |+. .|.++ +-.--..-+..+|.. +.++..+. |..-|..
T Consensus 133 ~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D--~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~ 204 (297)
T COG4785 133 NYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD--PND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWN 204 (297)
T ss_pred hHHHhccce-eeeecCchHhhHHHHHHHHhcC--CCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHH
Confidence 322223222 3344677888877666655542 222 12222 222223345555554 33444432 3222322
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPN-------DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
++..|...=.. ..+++.+... -..+ ..+|-.+.+.+...|+. .+|..+|+-.+..
T Consensus 205 iV~~yLgkiS~---e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~------~~A~~LfKLaian 266 (297)
T COG4785 205 IVEFYLGKISE---ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDL------DEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhhccH---HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHH
Confidence 22223222111 2233333321 1111 34566667777777765 5999999887764
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.77 E-value=23 Score=35.41 Aligned_cols=224 Identities=17% Similarity=0.119 Sum_probs=119.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH----H---HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC----CCCCHHh
Q 047873 209 LCKENRLDDAELLLHEMCERGLTPND----V---IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG----LNPDKIT 277 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 277 (464)
.....++++|..++.++...-..|+. . .++.+ .+....++ ++++.|.++.+.....- ..+....
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL-~a~val~~----~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQAL-RAQVALNR----GDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHH-HHHHHHhc----CCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 34568899999999887655222221 1 23322 22222222 34578888877776542 2234455
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH---H--HHHHhccCChH--HHHHHHHHHHHCC--CC----CC
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA---L--ISGFCRGGKVV--EAERMLREMLKVG--LK----PD 344 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~--~a~~~~~~~~~~~--~~----~~ 344 (464)
+..+..+..-.|++++|..+..+..+.....+...+.. + ...+...|... +....+....... -. +-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 67777888888999999998887766532333333322 2 22345566322 2333333332210 01 12
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CC
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPAVETY--NALMNGLCKHGQLKNANMLLDTMLDLGVV----PD 414 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~ 414 (464)
..++..++.++.+ ++.+..-...-.+. ...|-.... ..|+......|+.++|...++++...... ++
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2344555555554 33333332222222 112222222 35677888899999999999888753222 23
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHh
Q 047873 415 DITYNILLEG--HCKHGNPEDFDKLQSE 440 (464)
Q Consensus 415 ~~~~~~l~~~--~~~~g~~~~a~~~~~~ 440 (464)
...-...+.. ....|+.+++...+.+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3322223322 2377888887777665
No 320
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=23 Score=35.36 Aligned_cols=300 Identities=10% Similarity=0.009 Sum_probs=146.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
+.|...|+|++|++.-+. .|+. .++..-+..|.+.+++..|-+++.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~-----------------------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~------ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART-----------------------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL------ 416 (911)
T ss_pred HHHHhcchHHHHHHhccC-----------------------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh------
Confidence 345568888888886432 2333 555667778889999999999998762
Q ss_pred ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH-----HHHHHH-hcCChh----hHHHHHHHHh------
Q 047873 93 PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV-----LMHKLC-KEGKIK----DAQMVFDEFG------ 156 (464)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~-~~~~~~----~a~~~~~~~~------ 156 (464)
..+..+.--+...++.+.-..++.+=++ ...|...+-.. ++..|. +.++.+ ++..-++.-.
T Consensus 417 --~~FEEVaLKFl~~~~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re 493 (911)
T KOG2034|consen 417 --SSFEEVALKFLEINQERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQRE 493 (911)
T ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHH
Confidence 2345555555555655533333333332 22233222222 222222 233332 2222211110
Q ss_pred --hC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 157 --KR-GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 157 --~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
.. ...-+.....+....+...|+.+....+-..+. .|..++..+...+.+++|++++..-. +
T Consensus 494 ~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~ 558 (911)
T KOG2034|consen 494 FSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------N 558 (911)
T ss_pred HHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------c
Confidence 00 001122334444455556666666666555544 25667888888888888888876642 2
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG---DLESALDIRKEMIKRGIELDN 310 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~ 310 (464)
.......-..+...- +.+....+..... ..+......++..+.+.+ ....+...++-....-..-++
T Consensus 559 ~el~yk~ap~Li~~~-------p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~ 628 (911)
T KOG2034|consen 559 PELFYKYAPELITHS-------PKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNP 628 (911)
T ss_pred hhhHHHhhhHHHhcC-------cHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCH
Confidence 222222222222211 1233333333222 122333444454444442 334445554444443333477
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC------hHHHHHHHHHHHh
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD------TKTGFRLLKEMRS 373 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~ 373 (464)
..++.++..|++..+- .....++.....+-. ...-....++.|.+.+. ...+.++|.++++
T Consensus 629 ~ihn~ll~lya~~~~~-~ll~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVd 695 (911)
T KOG2034|consen 629 AIHNSLLHLYAKHERD-DLLLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVD 695 (911)
T ss_pred HHHHHHHHHhhcCCcc-chHHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHH
Confidence 8888888888776553 333334333332111 22223444555555543 3444455555544
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.69 E-value=21 Score=34.68 Aligned_cols=277 Identities=12% Similarity=0.047 Sum_probs=158.7
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHH-----HHhcCChhhHHHHHHHHhh-------CCCCCCcccHHHHHHHHHhc
Q 047873 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHK-----LCKEGKIKDAQMVFDEFGK-------RGLHATAVSFNTLINGHCKA 177 (464)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 177 (464)
...+.++++...+.| +......+..+ +....+++.|+..|..... .+ ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888887766 33333333333 3355788999999988866 44 344566677777764
Q ss_pred C-----ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 178 K-----NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK-ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 178 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
. +...|..++...-+.| .|+.......+..... ..+...|.++|....+.|.. ..+-.+..+|. .| ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~-~G-~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE-LG-LG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH-hC-CC
Confidence 3 6677999998888876 4555444333333222 24577999999999888743 23333333333 23 22
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H---hc----c
Q 047873 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG-F---CR----G 323 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~----~ 323 (464)
...+...|..++++....|. |...--...+..+.. +.++.+.-.+..+...+.. ...+-...+.. . .. .
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 24567899999999988873 332222222333333 7777777777666666543 22222221111 1 11 2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH----hcCC
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN----GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC----KHGQ 395 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 395 (464)
.+...+...+.+....| +......+...|..- .+++.|...+......+ ....-.+...+- ...
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV- 524 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-
Confidence 25566677777766654 445555555554432 45778888887777753 222222332222 123
Q ss_pred HHHHHHHHHHHHhC
Q 047873 396 LKNANMLLDTMLDL 409 (464)
Q Consensus 396 ~~~a~~~~~~~~~~ 409 (464)
+..|.++++...+.
T Consensus 525 ~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 525 LHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHhc
Confidence 67777777776653
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.64 E-value=1.1 Score=38.64 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=58.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
.+-|.++|++++|+++|.+..... +.++..+..-..+|.+.+.+..|..-++.++..+-. -..+|+.-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 445888888888888888776664 346667777777888888888777766666543211 233444444444445556
Q ss_pred hhHHHHHHHHhhC
Q 047873 146 KDAQMVFDEFGKR 158 (464)
Q Consensus 146 ~~a~~~~~~~~~~ 158 (464)
.+|.+=++...+.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 6666655555544
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.56 E-value=21 Score=34.61 Aligned_cols=273 Identities=14% Similarity=0.044 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHH-----HHcCCChhhHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDR-----MMRTNLPTVTLGFYLEILD-------YGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 142 (464)
...|.+.++.....| +......++.+ .....+.+.|+..+..+.+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888998888876 22222222222 3356789999999999877 44 444666778888775
Q ss_pred C-----ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hc
Q 047873 143 G-----KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC----KE 212 (464)
Q Consensus 143 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 212 (464)
. +...|..++...-..| .|+....-..+..... ..+...|.++|...-+.|.. .. +-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCcC
Confidence 4 5667999999888876 3444433333222222 24678999999999988732 32 222333322 23
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HH---HHh-
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL-DG---FCK- 287 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~- 287 (464)
.+...|..++.+..+.| .|....-...+..+.. +++ ..+...+..+...+.. ...+-...+ .. ...
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~------~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY------DTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFS 448 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc------cHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccc
Confidence 46789999999999887 2232222223333333 444 3555555555544432 111111111 11 111
Q ss_pred ---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---
Q 047873 288 ---EGDLESALDIRKEMIKRGIELDNVAFTALISGFCR----GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK--- 357 (464)
Q Consensus 288 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 357 (464)
..+...+...+......| +......+...|.. ..+++.|...+......+ ....-.+..++-.
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcC
Confidence 124455566666665554 34455555544433 245777888887776654 3333333333322
Q ss_pred -cCChHHHHHHHHHHHhC
Q 047873 358 -NGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 358 -~~~~~~a~~~~~~~~~~ 374 (464)
.+ +..|.++++.....
T Consensus 522 ~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEE 538 (552)
T ss_pred cch-hHHHHHHHHHHHhc
Confidence 23 67888888887775
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.52 E-value=0.21 Score=38.14 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=78.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 047873 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395 (464)
Q Consensus 316 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (464)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++ .. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHHHHHHhcch
Confidence 456666777777777888887766545567777888888888877677776665 11 11223456677777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchhHHHHhhccchhhhh
Q 047873 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 396 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 462 (464)
++++.-++.++-... . .+..+...+++++|.++..+ .++...|..+++.|...++
T Consensus 86 ~~~a~~Ly~~~~~~~---~------al~i~~~~~~~~~a~e~~~~---~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---E------ALEILHKLKDYEEAIEYAKK---VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---T------CSSTSSSTHCSCCCTTTGGG---CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---H------HHHHHHHHccHHHHHHHHHh---cCcHHHHHHHHHHHHhcCc
Confidence 777777776643211 0 11113345666666655554 4557888888877766544
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.52 E-value=1.1 Score=25.02 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 381 ETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776665
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.41 E-value=5.3 Score=27.53 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.-++.+-++.+...++.|++.+..+.+++|.+.+++..|.++|+.++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44556666666666677777777777777777777777777777766643
No 327
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.28 E-value=11 Score=31.02 Aligned_cols=221 Identities=20% Similarity=0.121 Sum_probs=105.1
Q ss_pred CChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcccccC
Q 047873 178 KNLDEGFRLKSVMEGSGMR-PDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLIDGHCKNGRIDMAGD 255 (464)
Q Consensus 178 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (464)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 111 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY----- 111 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH-----
Confidence 4444455555544433211 12445555666666666666666666665542 1122334444444444444433
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHH
Q 047873 256 MKEARKIVDEMCTNGLNPDKITYTILLD-GFCKEGDLESALDIRKEMIKRGI--ELDNVAFTALISGFCRGGKVVEAERM 332 (464)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (464)
..+...+.........+ ......... ++...|+++.+...+........ ......+......+...++.+.+...
T Consensus 112 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 112 -EEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred -HHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 46666666665543222 111222222 45566666666666666544211 01222233333334455566666666
Q ss_pred HHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 333 LREMLKVGLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 333 ~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
+....... +. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+++...+.....
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 190 LEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66655542 11 2344555555555555566666666555553 122 22333333333344455555555555543
No 328
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.26 E-value=7.7 Score=35.68 Aligned_cols=108 Identities=14% Similarity=-0.047 Sum_probs=68.2
Q ss_pred HHHhccCChHHHHHHHHHHHH---CCCCCCH-----hhHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCcCH--
Q 047873 318 SGFCRGGKVVEAERMLREMLK---VGLKPDD-----ATYTMVIDCFCKNGDTKTGFRLLKEMRS-------DGHLPAV-- 380 (464)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 380 (464)
+.+.-.|++.+|.+++-..-- .|...+. ..+|.+.-.+.+.|.+..+..+|.+... .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 344567888888887755321 1211121 1235555556666777777777766653 2444321
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047873 381 ---------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427 (464)
Q Consensus 381 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (464)
.+|| ..-.|...|++-.|.+.|.+...- +..++..|-.+..+|..
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2343 344577889999999999888763 56789999999998873
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.21 E-value=3.5 Score=33.38 Aligned_cols=75 Identities=16% Similarity=0.008 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC--CChhhHHHHHHH
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS--PSVYVFNVLMHK 138 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 138 (464)
+..+..+.+.++.++|+...+.-++.. |.+......++..+|-.|++++|..-++-.-+..+. +-..+|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556677788888888887776664 456667788888888888888888777766554322 334556666654
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.04 E-value=0.65 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLH 31 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~ 31 (464)
.+...+...+...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778899999999999999876
No 331
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=10 Score=31.38 Aligned_cols=86 Identities=7% Similarity=-0.096 Sum_probs=50.3
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
-|.....+..|+..|.+++ -+.|+. .-|..-+..+.+..+++.+..--.+..+.. +...
T Consensus 19 k~f~~k~y~~ai~~y~raI-------------------~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~v 78 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI-------------------CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLV 78 (284)
T ss_pred cccchhhhchHHHHHHHHH-------------------hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHH
Confidence 3444455666666666666 455665 555555666666666666666555555543 2233
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEIL 121 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 121 (464)
.....+...+.....+++|+..+.+..
T Consensus 79 k~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 79 KAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 444555566666666677766666654
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.66 E-value=1.2 Score=23.53 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666777778888888888888776654
No 333
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=31 Score=35.09 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
|..|+..|...|+.++|++++.....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 67788888888888888888888764
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.35 E-value=9.4 Score=28.97 Aligned_cols=55 Identities=11% Similarity=-0.193 Sum_probs=35.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
-...++++++..+++.+.-.. |-....-..-...+...|++.+|..+++.+.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 345778888888888776653 2222333333445667788888888888887654
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.13 E-value=36 Score=35.44 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 047873 418 YNILLEGHCKHGNPEDFDKL 437 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~ 437 (464)
...|+.++...|..++|.++
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHH
Confidence 34556666666666665554
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.99 E-value=0.93 Score=23.06 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
.+|..++.++...|++++|...|+..++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999999873
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.66 E-value=14 Score=31.92 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (464)
...+...++..-....+++.+...+-+++... ..|+. +-...++.+ -.-++++++.++..=+.-|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 44444455554455666677776666665431 01111 111122222 12345566666666666677777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 047873 386 LMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 386 l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
+++.+.+.+++.+|.++.-.|.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHH
Confidence 7777777777777766665554
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.63 E-value=9.9 Score=32.82 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG---LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
|......+...++.......+++.+...+-++.... ..|+.. -..+++.+.+. +.+.++.++..-++.|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllky-------~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLKY-------DPQKAIYTLVNPIQYG 130 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHcc-------ChHHHHHHHhCcchhc
Confidence 334455555555555555667777777777765541 111111 12233333332 2357777777777788
Q ss_pred CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
+-||..+++.++..+.+.+++..|..+.-.|...
T Consensus 131 iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 131 IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888888887776666554
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.62 E-value=55 Score=37.04 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=51.0
Q ss_pred HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 047873 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340 (464)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (464)
..+|....+...+.|+++.|...+-...+.+ -+..+.-.+....+.|+...|+.++++.....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4568888888888999999998877777765 23667777888889999999999999988653
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.16 E-value=18 Score=30.97 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--------HHHHHHhcCCCCchhHH
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--------FDKLQSEKGLVSDYACY 450 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--------a~~~~~~~~~~p~~~~~ 450 (464)
+++.....|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--. |..+..+.|+.-+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45566788999999999999999998753 4477888888999999998333 34444457887765543
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.08 E-value=0.94 Score=23.68 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+-.++.++.+.|++++|++.|+++...
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334566677777777777777777665
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.96 E-value=33 Score=33.82 Aligned_cols=151 Identities=7% Similarity=0.052 Sum_probs=92.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC---ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRI---PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
++.+.+.+.+++|++.-+..... .+ ........+..+...|++++|-...-+|.. -+...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45677889999999987764433 33 345677888888999999999998888875 3667777777777777
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh---------hCCC-------CCCHHHHHHHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME---------GSGM-------RPDVYTYSALI 206 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~-------~~~~~~~~~l~ 206 (464)
++......+ ++......+..+|..++..+.. .+...-.++...-. .... .-+...-..|+
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 765443332 2222222456778888877766 22222111111100 0000 11122234477
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 047873 207 NGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~~~ 226 (464)
..|...+++..|+.++-.+.
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77888888888888877765
No 343
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=86.84 E-value=16 Score=30.14 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
..-+..|.+.-++.-|....+++.+. ..+-.+++ -|.+..+..--..+.+-....+++.+..-+..++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 33455666666666666665555441 22222322 3455555444444444445555555555544443 4567
Q ss_pred CChHHHHHHHHHHHhC-C-----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 359 GDTKTGFRLLKEMRSD-G-----------HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 359 ~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
||..+|+.-++.-... | -.|.+.....++..|.. +++++|.+.+.++-+.|+.|... .+.+.+++-
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 8888888887765442 1 24777778888887655 68999999999999999887554 344555554
Q ss_pred hcCCHHHHH--HHHHhcCC
Q 047873 427 KHGNPEDFD--KLQSEKGL 443 (464)
Q Consensus 427 ~~g~~~~a~--~~~~~~~~ 443 (464)
... ..|-. +++++.|+
T Consensus 284 ~~~-~~E~~rlE~ikeig~ 301 (333)
T KOG0991|consen 284 NMD-VAESLRLEFIKEIGL 301 (333)
T ss_pred hcc-HHHHHHHHHHHHHhh
Confidence 433 55544 55666543
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.84 E-value=2.7 Score=27.67 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
..+.+| ...+..+|+..+++++++. ..+++. .++..++.+|...|++.++++.-
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~----------------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKI----------------TDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhc----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 6778888888888888542 223333 78889999999999999988864
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.71 E-value=8.7 Score=26.85 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (464)
-+..+-+..+....+.|++.+..+.+++|.+.+++..|.++++.+..+--. ....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 356666666666667777777777778888888888888877777655221 2225555443
No 346
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.87 E-value=69 Score=36.38 Aligned_cols=318 Identities=11% Similarity=0.052 Sum_probs=165.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
.+..+-.+++.+.+|+-.+++-.....+ .....+..+...|...++++....+...-. .+...+.. +.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHh
Confidence 5566777899999999999984211111 112233444448889999998877766421 24444443 446778
Q ss_pred cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCChhHHHH
Q 047873 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA-LINGLCKENRLDDAEL 220 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 220 (464)
.|++..|...|+.+.+.+ ++....++-++......|.+..+.-..+-..... .+....++. =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 3446778877777777777777776555554331 222333332 2334467778877776
Q ss_pred HHHHHHHCCCCCCHHHHHH--HHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC--------C-HHhHHHHHHHHHhCC
Q 047873 221 LLHEMCERGLTPNDVIFTT--LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP--------D-KITYTILLDGFCKEG 289 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~ 289 (464)
.+. +. +..+|.. +.....+..+.|. -.-....+.+...-+.| + ...|..++..+.-..
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~----~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDE----IATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccch----hhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 665 22 2222322 3333333333221 11112222222211111 0 012222222221110
Q ss_pred ChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCChHHHHHHHHH-HHHCCCCC-----CHhhHHHHHHHHHh
Q 047873 290 DLESALDIRKEMIKRGIELDN------VAFTALISGFCRGGKVVEAERMLRE-MLKVGLKP-----DDATYTMVIDCFCK 357 (464)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~-----~~~~~~~ll~~~~~ 357 (464)
-....+... +..++. .-|..-+..-....+..+-+--+++ +......| -..+|....+....
T Consensus 1609 ----l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1609 ----LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred ----HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 000111111 111111 1122222111111111111111111 11111111 23567778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
.|+++.|...+-.+.+.+ -+..+-..+..+...|+-..|+.++++.++.
T Consensus 1683 aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999888777776653 3345566777788899999999999888753
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.83 E-value=21 Score=30.41 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
..+..-.+.+.-..+|..|++..++..+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglq 63 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQ 63 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666788888887776543
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.36 E-value=0.56 Score=35.77 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=26.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 047873 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
+..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444455555555555555544434445555555555555555555555444
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.31 E-value=9 Score=31.17 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
+..+.+.+...+++...++-++..+. |..+-..+++.++-.|++++|..-++-.-+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34444555555555555554444332 444444555555555555555555444433
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.18 E-value=27 Score=31.08 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh---cCChhHHHHHH
Q 047873 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK---AKNLDEGFRLK 187 (464)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 187 (464)
+.-+.+++++++.++ .+...+...+..+.+..+.+...+-++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445667777777654 366667777777777777777777777777653 2245566666555443 22355555555
Q ss_pred HHHhhC------CC----CCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 188 SVMEGS------GM----RPDV-------YTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 188 ~~~~~~------~~----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
.+..+. +. .+.. ..+..+......+|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554321 11 1111 1233344455678999999999999988754
No 351
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.94 E-value=10 Score=26.05 Aligned_cols=32 Identities=25% Similarity=0.121 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
|.+..+...+...+...|++++|++.+-.++.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666777777777777777777777777764
No 352
>PRK09687 putative lyase; Provisional
Probab=84.31 E-value=27 Score=30.33 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh----hHHHHHHHHHhhCCCCCCHHHH
Q 047873 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL----DEGFRLKSVMEGSGMRPDVYTY 202 (464)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 202 (464)
+|.......+..+...|. +.+...+..+.. .+|...-...+.++...|+. .++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666666664 233333333333 23555555556666666653 3455555554322 3444444
Q ss_pred HHHHHHHHh
Q 047873 203 SALINGLCK 211 (464)
Q Consensus 203 ~~l~~~~~~ 211 (464)
...+.++..
T Consensus 109 ~~A~~aLG~ 117 (280)
T PRK09687 109 ASAINATGH 117 (280)
T ss_pred HHHHHHHhc
Confidence 444444443
No 353
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.30 E-value=31 Score=31.04 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIEL---DNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
.++..++..+.+.|.++.|...+..+...+... .+......+...-..|+..+|...++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555666666666666655555432111 223333344444555555666665555554
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=20 Score=30.54 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 047873 203 SALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
..++..+.+.|.+.+|+.+...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 357788899999999998776554
No 355
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=40 Score=35.07 Aligned_cols=172 Identities=9% Similarity=-0.002 Sum_probs=106.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH--------hcCCCCCh-----hhHHHHHHHHHhcCChhHH
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------TRGTHLPG-----LVLDALMIVYVDLGFLDDA 78 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-----~~~~~l~~~~~~~g~~~~A 78 (464)
.++.+|..-|...+|+..|.++.+..| +...+...+.. ..|..|.. .-|..+++.+-+.+-.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~g--e~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~v 1002 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFG--EGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEV 1002 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccc--cHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHH
Confidence 445568889999999999999975444 44455555555 23433333 3467888899999999999
Q ss_pred HHHHHHHHhCCC--CCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh----HHHHHHHHHhcCChhh----
Q 047873 79 IQCFRLLRKHYF--RIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV----FNVLMHKLCKEGKIKD---- 147 (464)
Q Consensus 79 ~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~---- 147 (464)
.++-....+.-. .|+ +..++.+.......|.+.+|...+-.- ||... ...++-.+..+|.++.
T Consensus 1003 cQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1003 CQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 888776655410 122 344667777777888887776554322 44433 3456666777777643
Q ss_pred --------HHH-HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHH-HHHHh
Q 047873 148 --------AQM-VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVME 191 (464)
Q Consensus 148 --------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~ 191 (464)
... +++...+.........|+.|-..+...+++.+|-.+ |+...
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 333 333333332222344577777777788888887654 55443
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.93 E-value=2.4 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
.+..+|...|+.+.|+++++.+...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888887654
No 357
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.72 E-value=27 Score=29.99 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhc-cC-ChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcCHHHHH
Q 047873 309 DNVAFTALISGFCR-GG-KVVEAERMLREMLKV-GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYN 384 (464)
Q Consensus 309 ~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 384 (464)
|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.+++...... +..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 55555555555544 11 222222223333221 23455666666677777777777777766666554 4444666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHH
Q 047873 385 ALMNGLCKHGQLKNANMLLDTM-----LDLGVVPDDITYNILLE 423 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~p~~~~~~~l~~ 423 (464)
.++......|+..-...+.++- .+.++..+...-..+-.
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 7777777777766666555442 23444444444444333
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.55 E-value=4.5 Score=26.67 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 392 KHGQLKNANMLLDTMLDLGVVP--DDITYNILLEGHCKHGNPEDFDKL 437 (464)
Q Consensus 392 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 437 (464)
.....++|+..|+..++.-..+ -..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776542222 234566677777777777776655
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.47 E-value=7.8 Score=30.50 Aligned_cols=30 Identities=7% Similarity=-0.035 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 105 (464)
++.|++.++.-...+ |.+...+.....++.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALL 36 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALL 36 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHH
Confidence 455566555544444 445555444444433
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.31 E-value=3.3 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 047873 205 LINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666543
No 361
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.98 E-value=35 Score=30.68 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP---DDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
...+|..++..+.+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55678889999999999999999999998754211 344555567777888999999999988877
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.84 E-value=6.4 Score=28.67 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
..+-++.+..-++.|++......+++|.+.+++..|.++|+-.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555556777888888888888888888888888877764
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.81 E-value=13 Score=35.18 Aligned_cols=118 Identities=16% Similarity=0.050 Sum_probs=82.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
.|--.++|...-.+...|+...|...+.......+.-.......+...+.+.|....|..++.+.+.... ..+.++..+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhc
Confidence 3333555555555567789999999888776554232344566777788888888888888888777664 367778888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
.+++....+++.|++.|++..+.. +.+...-+.|...-|
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 899999999999999998887763 224444455554444
No 364
>PRK12798 chemotaxis protein; Reviewed
Probab=82.31 E-value=39 Score=30.78 Aligned_cols=207 Identities=10% Similarity=0.050 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHH-HHcCCChhhHHHHHHHHHhcCC--CCChhhHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR-MMRTNLPTVTLGFYLEILDYGY--SPSVYVFNVLM 136 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 136 (464)
.....-+..|. .|+..+|.+.+..+.....++..-.+..|+.+ +....++.+|+.+|+...-.-+ -........-+
T Consensus 114 ~~L~~g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 114 QRLADGALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 33444444554 69999999999998887767666677777655 4567889999999998764321 11223344455
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCCCccc--H-HHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVS--F-NTLINGHCKAKN---LDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (464)
......|+.++...+-.+...+- ..++.. | ..+...+.+.++ .+....++..|.. ..-...|..+.+.-.
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Al 268 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRF-RHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAAL 268 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHH
Confidence 56788899998877766665541 223222 2 223333333332 3333333443331 223557888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (464)
-.|+.+-|.-.-++....... ...-......|....... ..+++.+.+.+..+....+.+.
T Consensus 269 i~Gk~~lA~~As~~A~~L~~~--~~~~~~ra~LY~aaa~v~-s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 269 IDGKTELARFASERALKLADP--DSADAARARLYRGAALVA-SDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HcCcHHHHHHHHHHHHHhccC--CCcchHHHHHHHHHHccC-cccHHHHHHHHhcCChhhCChh
Confidence 899988888777776655311 111222233333322222 2335677777777655555444
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.31 E-value=38 Score=30.66 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh----------------cCCCCCh-hhH---H
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET----------------RGTHLPG-LVL---D 63 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~-~~~---~ 63 (464)
|.-+.++-.+...+.++|+...|.+++++++- +++..+-. .=..+.+ ..| -
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf---------~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF---------AFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 45567788888899999999999999999872 22222111 0001122 222 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHH-cCCChhhHHHHHHHHHh
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM-RTNLPTVTLGFYLEILD 122 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 122 (464)
..+..+.+.|-+..|+++.+-+...++.-|+......|..|+ +.++++--+++++....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344556777777788887777777764446666666666554 56666666666665443
No 366
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.00 E-value=1.2 Score=38.66 Aligned_cols=92 Identities=12% Similarity=-0.044 Sum_probs=60.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
..|.++.|++.|....... ++....|..-..++.+.+++..|+.=+...+...+. ...-|-.-..+....|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4577788888877777665 455566666667777777777777777777765433 33334444445555677788877
Q ss_pred HHHHHhhCCCCCCc
Q 047873 151 VFDEFGKRGLHATA 164 (464)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (464)
.+....+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77777777654433
No 367
>PRK10941 hypothetical protein; Provisional
Probab=81.83 E-value=19 Score=30.88 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+.+-.++.+.++++.|+...+.++...+. ++.-+.--...|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 33445566677777777777777666554 5555665666677777777776666655443
No 368
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.71 E-value=46 Score=31.11 Aligned_cols=394 Identities=12% Similarity=0.114 Sum_probs=191.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhc-CChhHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDL-GFLDDAIQ 80 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~ 80 (464)
|+.++.-|...+..+-+.+.+.+.-.+|.+|+ ..+|++ .+|..-+.....- -+++.|+.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l-------------------~~Hp~~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAML-------------------AKHPNNPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH-------------------HhCCCCchhHHhhhhhHHhhccchHHHHH
Confidence 45688888888888888888888888888888 445555 7776655544433 35899999
Q ss_pred HHHHHHhCCCCCChhcHHHHHHH---HH-cC-------CC--hhhHHHHHH--HHHhcCCCCChhhHH---HHH--HHHH
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDR---MM-RT-------NL--PTVTLGFYL--EILDYGYSPSVYVFN---VLM--HKLC 140 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~---~~-~~-------~~--~~~a~~~~~--~~~~~~~~~~~~~~~---~l~--~~~~ 140 (464)
+|.+..+.+ |-++..|...++. +. +. |. -++-.++-+ ..-.. ..++..... ..+ ....
T Consensus 162 lflrgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~-~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 162 LFLRGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWIN-YANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred HHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh-hccchhhhhcchhhcchHHHH
Confidence 998888775 3344444333221 11 10 00 000011111 00000 001111100 000 0000
Q ss_pred hcCChhhH-HHHHHHHhhCCCCCCcccHHHHHHH----HHhc---------------CChhHHHHHHHHHhhCCCCCCHH
Q 047873 141 KEGKIKDA-QMVFDEFGKRGLHATAVSFNTLING----HCKA---------------KNLDEGFRLKSVMEGSGMRPDVY 200 (464)
Q Consensus 141 ~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~---------------~~~~~a~~~~~~~~~~~~~~~~~ 200 (464)
......+- ..+.+.+... .+.++.+|..+..- +... .+.+....+|+...+. -|+..
T Consensus 240 ~~d~~kel~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~s 316 (568)
T KOG2396|consen 240 KFDFLKELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHH
Confidence 00111111 1122223222 23445555433322 1110 0112233455554432 34445
Q ss_pred HHHHHHHHHHhcC------ChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC
Q 047873 201 TYSALINGLCKEN------RLDDAELLLHEMCERG-LTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272 (464)
Q Consensus 201 ~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (464)
.|+..|..|...- .+.....+++...+.+ ..+ ....|..+.-.++... ++...-..+...+..
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~---------~~r~~a~~l~~e~f~ 387 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLN---------EAREVAVKLTTELFR 387 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccc---------hHhHHHHHhhHHHhc
Confidence 5555555554321 3344455555554432 222 3445555555555544 333333333323334
Q ss_pred CCHHhHHHHHHHHHhCC-ChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHH-H-HHHHHHHHHCCCCCCHhh
Q 047873 273 PDKITYTILLDGFCKEG-DLESAL-DIRKEMIKRGIELDNVAFTALISGFCRGGK-VVE-A-ERMLREMLKVGLKPDDAT 347 (464)
Q Consensus 273 ~~~~~~~~l~~~~~~~~-~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-a-~~~~~~~~~~~~~~~~~~ 347 (464)
.+...|..-+....... +++-.. .++..+...-..+....|+... .|+ +.. . ..++......+ .|+..+
T Consensus 388 ~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~t 461 (568)
T KOG2396|consen 388 DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVT 461 (568)
T ss_pred chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceee
Confidence 45555544444333221 222211 2223333221122222233222 222 111 1 12233333333 455554
Q ss_pred H-HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 047873 348 Y-TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK--HGQLKNANMLLDTMLD-LGVVPDDITYNILLE 423 (464)
Q Consensus 348 ~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~ 423 (464)
+ +.++..+.+.|...+|...+..+... .+|+...|..++..=.. +-+...+.++++.|.. .| .|+..|--.+.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 4 56788888899999999999999887 56778888888754321 2237888899988874 45 68888877777
Q ss_pred HHHhcCCHHHHHHHH
Q 047873 424 GHCKHGNPEDFDKLQ 438 (464)
Q Consensus 424 ~~~~~g~~~~a~~~~ 438 (464)
--...|..+.+-.+.
T Consensus 539 ~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 539 EELPLGRPENCGQIY 553 (568)
T ss_pred hhccCCCcccccHHH
Confidence 777888877655543
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.07 E-value=53 Score=30.84 Aligned_cols=181 Identities=13% Similarity=0.060 Sum_probs=121.3
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 55 THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
-+.|+.-+.+++..+..+-++.-..-+..++..-| .+..++..++.+|... ..+.-..+++++.+..+. |+..-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34455777788888888888888888888888775 4667788888888877 667888888888887665 5555555
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCC--CC---cccHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLH--AT---AVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALING 208 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 208 (464)
|+..|-+ ++-..+...|.++..+=++ .+ ..+|..+... -..+.+..+.+...+... |...-...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 6655555 7777888888777554221 11 1234444432 135666677766666532 444455666777778
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047873 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (464)
|....++++|++++..+.+.+-+ |...-..++..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 88899999999999988876432 44333344443
No 370
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.04 E-value=15 Score=25.27 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=35.1
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhcHHHHHHHHHcCCChh
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI-PARGCRCLIDRMMRTNLPT 111 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 111 (464)
.|++ .....+...+...|++++|++.+-.+.+.+... +...-..++..+...|.-+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4555 888888888999999999999988888775332 2344455555555445433
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.73 E-value=11 Score=26.21 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-----GLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
..+.|++.+|++.+.+....... +..+. ..+...+.......|++++|++.+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~--------------~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQ--------------SNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh--------------cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34799999999999888743211 11111 134445667778888999998888887654
No 372
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.67 E-value=33 Score=27.59 Aligned_cols=129 Identities=10% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhH----
Q 047873 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFT--ALISGFCRGGKVVEAERMLREMLKVGLKPDDATY---- 348 (464)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 348 (464)
...|..++.... .+.+ +.....+.+........-..+. .+...+...|++++|...++..... |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555555443 3444 4445555555543221112222 2345677889999999999887754 222222
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047873 349 -TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 349 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 410 (464)
-.|.+.....|.+++|+..++.....+. .......-.+.+...|+.++|+.-|+..+..+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3455667788899999998887776432 23334555778889999999999999888764
No 373
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.49 E-value=37 Score=28.18 Aligned_cols=54 Identities=6% Similarity=0.039 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHhhC--CCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047873 178 KNLDEGFRLKSVMEGS--GMR---PDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231 (464)
Q Consensus 178 ~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 231 (464)
.+++.|+..|+..-+. |-+ .....+.-+...-+..+++.+|+++|+++......
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555554321 111 11223334445556678899999999998776443
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.05 E-value=18 Score=34.35 Aligned_cols=133 Identities=12% Similarity=-0.090 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHH
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (464)
.+-|-.+|..|.... .|-=...+.........|++..|...+..+....+.........|.......|-...|..++.+
T Consensus 589 ~e~~~~~~~~~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHHhcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 344555555554432 2211222322323345799999999998888766554555566788888888888899998888
Q ss_pred HhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047873 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210 (464)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (464)
..... ...+.++-.+.+++....+++.|++.|+...+.. .-+...-+.|...-|
T Consensus 668 ~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 668 ALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 76654 3456677888899999999999999999888764 224444455544433
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.01 E-value=8.6 Score=35.26 Aligned_cols=105 Identities=8% Similarity=-0.094 Sum_probs=76.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
-++-+...+.++.|..+|.+++ ...|+. ..+..-..++.+.+++..|+.=+.+..+.+ |
T Consensus 10 ean~~l~~~~fd~avdlysKaI-------------------~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P 69 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI-------------------ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-P 69 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH-------------------hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-c
Confidence 3455667889999999999998 667776 555656688899999999999888888876 3
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
--...|..-..++.+.+.+.+|+..|+...... |+..-....+.-|
T Consensus 70 ~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~--Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 70 TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA--PNDPDATRKIDEC 115 (476)
T ss_pred hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC--cCcHHHHHHHHHH
Confidence 345566666677777888888888888777643 4544444444433
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.37 E-value=1.9 Score=37.43 Aligned_cols=95 Identities=7% Similarity=-0.077 Sum_probs=73.2
Q ss_pred HcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 047873 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEG 183 (464)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 183 (464)
...|.+++|++.|...+...+. ....|..-..++.+.+.+..|++=++.....+ || ..-|-.--.+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 4568899999999999987653 77777778888999999999999888877663 33 34455555566678999999
Q ss_pred HHHHHHHhhCCCCCCHHHH
Q 047873 184 FRLKSVMEGSGMRPDVYTY 202 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ 202 (464)
...+....+.+..+....+
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 9999999888766554443
No 377
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.06 E-value=44 Score=27.78 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
.+.....+++ +...|+..+|+..++...+..|.-....+|. . -..|.....-.++..+ ..+++++|.+.+..
T Consensus 192 yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfK----v-~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~ 263 (333)
T KOG0991|consen 192 YTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFK----V-CDEPHPLLVKKMLQAC-LKRNIDEALKILAE 263 (333)
T ss_pred CCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhh----c-cCCCChHHHHHHHHHH-HhccHHHHHHHHHH
Confidence 3444444444 5668888888888888776665544443333 2 1234444444444433 34677777777777
Q ss_pred HHhCCCCC
Q 047873 85 LRKHYFRI 92 (464)
Q Consensus 85 ~~~~~~~~ 92 (464)
+.+.|..|
T Consensus 264 lw~lgysp 271 (333)
T KOG0991|consen 264 LWKLGYSP 271 (333)
T ss_pred HHHcCCCH
Confidence 77776543
No 378
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.55 E-value=73 Score=30.00 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 047873 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312 (464)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (464)
|.....+++..+.++-.. +-...+..+|...| .+...+..++.+|..+ ..++-..+|+++.+..+. |...
T Consensus 65 ~d~~l~~~~~~f~~n~k~------~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~ 134 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKN------QIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVI 134 (711)
T ss_pred cchHHHHHHHHhccchHH------HHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHH
Confidence 344444455555444332 34444555555432 3445555566665555 445555566655555443 3333
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcCHHHHHHH
Q 047873 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPD-----DATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYNAL 386 (464)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 386 (464)
-..++..|.+ ++.+.+..+|.++...-++.. ...|.-+...- ..+.+..+.+...+... |...-...+.-+
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 3333333333 555556666655544321100 01222222111 23455555555555444 333334445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (464)
-.-|....++++|++++..+.+.. ..|.....-++..+
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 566666777777777777666543 22444444444433
No 379
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.16 E-value=54 Score=28.30 Aligned_cols=116 Identities=9% Similarity=0.116 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHh-cC-ChHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 047873 325 KVVEAERMLREMLK-VGLKPDDATYTMVIDCFCK-NG-DTKTGFRLLKEMRSD-GHLPAVETYNALMNGLCKHGQLKNAN 400 (464)
Q Consensus 325 ~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 400 (464)
.+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +..++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653211 2234467777777777765 22 333344444444443 45678888899999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 401 MLLDTMLDL-GVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 401 ~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
++|+..... +..-|...|..++......|+..-..++..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999988754 4556899999999999999999999999886
No 380
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=75.14 E-value=58 Score=28.76 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSD---GHLPAVETY--NALMNGLCKHGQLKNANMLLDTMLD-----LGVVPDD 415 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~ 415 (464)
.....++....+.++.++|+++++++++. ...|+...| ..+.+++...|+.+++.+.+.+..+ -+++|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HHHHHHHHH--HHhcCCHHHHHH
Q 047873 416 ITYNILLEG--HCKHGNPEDFDK 436 (464)
Q Consensus 416 ~~~~~l~~~--~~~~g~~~~a~~ 436 (464)
.+--..+.. |...|++..+.+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 381
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.05 E-value=35 Score=28.17 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=41.8
Q ss_pred HHhccCChHHHHHHHHHHHH----CCCCCC--HhhHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCc----C-H
Q 047873 319 GFCRGGKVVEAERMLREMLK----VGLKPD--DATYTMVIDCFCKNGD-------TKTGFRLLKEMRSDGHLP----A-V 380 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~----~-~ 380 (464)
-+.....+++|...+.-+.- .+.++. ...+..+...|...|+ ...|.+.|.+..+....| + .
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 35555666677666665432 122233 2234444555555555 233444444444432111 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 381 ETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
...-.+.....+.|+.++|.+.|.++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 2222334444556666666666666654
No 382
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=74.80 E-value=33 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
.++..++.-+.-.|+++.|+++.+-..+.|.+.
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCCCc
Confidence 455566666777788888888887777777543
No 383
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.60 E-value=15 Score=30.25 Aligned_cols=55 Identities=13% Similarity=-0.048 Sum_probs=47.5
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
...+.|+.+.|.++|.+++ +..|+. ..|..+...--+.|+++.|.+.+++..+.+
T Consensus 4 ~~~~~~D~~aaaely~qal-------------------~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQAL-------------------ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHh-------------------hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3567899999999999998 666666 889999999999999999999999998886
No 384
>PRK10941 hypothetical protein; Provisional
Probab=74.27 E-value=34 Score=29.39 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PSVYVFNVLMHKL 139 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 139 (464)
..+.+-.+|.+.++++.|+.+.+.+.... |.++.-+.--+..|.+.|.+..|..=++..++..+. |+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 33457778999999999999999999886 556667777888899999999999988888766543 4444444444444
Q ss_pred H
Q 047873 140 C 140 (464)
Q Consensus 140 ~ 140 (464)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 385
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.63 E-value=80 Score=29.56 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=74.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC----h-hhHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 047873 14 VHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP----G-LVLDALMIVYVDLGFLDDAIQCFRLLRK- 87 (464)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 87 (464)
-+.+..+|++.+|.+++...-.. ...|...+ . ..||.+.-.+.+.|.+.-+..+|.+..+
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~--------------~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N 312 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIH--------------KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN 312 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccc--------------cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence 34556799999999987664210 00011111 2 4457777778888888888888777663
Q ss_pred ------CCCCCCh----------hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 88 ------HYFRIPA----------RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 88 ------~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
.|+.|.. +......-.|...|++-.|.+.|.+....- ..++..|..+..+|.-.
T Consensus 313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 3433321 112233446778999999999999887753 34889999999988754
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.54 E-value=21 Score=28.81 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=21.2
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
..|++..|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346666666666666666666666666666654
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.30 E-value=62 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERML 333 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (464)
++.....+...|.+.+++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455555555666666665555433
No 388
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.21 E-value=94 Score=29.77 Aligned_cols=160 Identities=13% Similarity=0.012 Sum_probs=99.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-----------CCChhcHHHHHHHHHcCCChhhHHHHHHHHH-------hcCCCC---
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYF-----------RIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-------DYGYSP--- 127 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~--- 127 (464)
+.....+++|...|.-.+.... |-...+...+..++...|+.+.+.++.++.+ ...+.|
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3445667788888876655421 1123445666677888898888777766543 222111
Q ss_pred ----------ChhhHH---HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHhhC
Q 047873 128 ----------SVYVFN---VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC-KAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 128 ----------~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 193 (464)
|-..|. .-++.+.+.|.+..|.++-.-+.+....-|+.....+|..|+ +..+++-.+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 122222 235567788999999999988888754446677777788776 677888888888777543
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 047873 194 ---GMRPDVYTYSALINGLCKENR---LDDAELLLHEMCER 228 (464)
Q Consensus 194 ---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 228 (464)
..-|+..--.++...|.+... -..|...+.++...
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 234555444456666666555 34556666665554
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.91 E-value=65 Score=27.39 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIEL-----------DNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
+.+...|...+.+.+..+++.++....-.- -..+|..-++.|....+-.....++++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 345555555555555555555554321100 11345555556665555555555665554
No 390
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.26 E-value=41 Score=24.77 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
+..+-+..+...++.|++......+++|.+.+++..|.++|+.+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55666666667777888888888888888888888888888877765
No 391
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.97 E-value=37 Score=25.93 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
+.+.+.|.+++. -...++..+...+.+-.|.++|+++.+.++..+..|....+..+...|-
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334455554443 3455666666666667777777777776666555554445555555543
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.60 E-value=20 Score=21.69 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
...+.-++.+.|++++|.+..+.+++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34556678899999999999999993
No 393
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.47 E-value=11 Score=22.75 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047873 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421 (464)
Q Consensus 386 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 421 (464)
+.-++.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34456677777777777777765 35654444333
No 394
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.10 E-value=75 Score=26.27 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
-.++....+.|++++|.+.|.++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34444455555555555555555544
No 395
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.97 E-value=17 Score=19.74 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLH 31 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~ 31 (464)
+.|..+.-.+-..|++++|+++|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456677888889999999999955
No 396
>PRK13342 recombination factor protein RarA; Reviewed
Probab=65.51 E-value=1.2e+02 Score=28.30 Aligned_cols=38 Identities=24% Similarity=0.123 Sum_probs=24.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047873 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 212 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (464)
.++.+.|+.++..|.+.|..|....-..++.++..-|.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 46777888888888887766665544444444444443
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.25 E-value=35 Score=31.26 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-------CCCChhcHHHHHHHHHcCCChhhHHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHY-------FRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 121 (464)
.+...|++.++-.|++..|+++++.+.-.. ......++.-++-+|.-.+++.+|...|..++
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999988764221 11123344555556666666666666666544
No 398
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.14 E-value=26 Score=20.59 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=17.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 391 CKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 391 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
.+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555666665555555555555444
No 399
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.90 E-value=82 Score=26.31 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHHHHHhc-CChhhHHHHHHHHhhC--CCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH----
Q 047873 135 LMHKLCKE-GKIKDAQMVFDEFGKR--GLHATAV---SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA---- 204 (464)
Q Consensus 135 l~~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 204 (464)
+...|-.. .++++|+..|+..-+- |-..+.. .+..+.......+++.+|.++|++.....+..+.--|..
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444433 5666666666655332 1111111 122333344567889999999998876654433322221
Q ss_pred --HHHHHHhcCChhHHHHHHHHHHHC
Q 047873 205 --LINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 205 --l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
-.-++.-..+.-.+...+++..+.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 111222235555566666666655
No 400
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.89 E-value=80 Score=29.28 Aligned_cols=209 Identities=15% Similarity=0.109 Sum_probs=95.4
Q ss_pred HHcCCChhhHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc--cHHHHHHHHHhcCC
Q 047873 104 MMRTNLPTVTLGFYLEILDYGYSPSVYV--FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV--SFNTLINGHCKAKN 179 (464)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 179 (464)
.+..|+.+.+ +.+++.|..++... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3455665444 44455676655432 23455566677776544 3444455444432 12344556667888
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCcccccCH
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV---IFTTLIDGHCKNGRIDMAGDM 256 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~ 256 (464)
.+.+..+++.-.......+... ...+...+..|+.+ +++.+.+.|..|+.. ..+.+. ..+..|+.
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh-~A~~~~~~------ 148 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLH-LAVMMGDI------ 148 (413)
T ss_pred HHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHH-HHHHcCCH------
Confidence 7766555543211100011111 12334445566653 444455555544322 222333 33344443
Q ss_pred HHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCChHHHH
Q 047873 257 KEARKIVDEMCTNGLNPD---KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA---FTALISGFCRGGKVVEAE 330 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~ 330 (464)
+ +++.+.+.|..++ ..-.+.+. ..+..|+.+ +.+.+++.|..++... ....+...+..|+.+
T Consensus 149 -~---~v~~Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~--- 216 (413)
T PHA02875 149 -K---GIELLIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID--- 216 (413)
T ss_pred -H---HHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence 2 2333444444332 22233333 334556654 4445566666554321 123333334556554
Q ss_pred HHHHHHHHCCCCCCH
Q 047873 331 RMLREMLKVGLKPDD 345 (464)
Q Consensus 331 ~~~~~~~~~~~~~~~ 345 (464)
+.+.+.+.|..++.
T Consensus 217 -iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 -IVRLFIKRGADCNI 230 (413)
T ss_pred -HHHHHHHCCcCcch
Confidence 44445566666654
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.72 E-value=84 Score=26.35 Aligned_cols=118 Identities=13% Similarity=-0.048 Sum_probs=75.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCh-hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (464)
-|....+++.|+..|.+..... |+. ..|..-+.++.+.++++.+..-..+.++..+. .+.....+.........++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 3556678889999887777664 444 45666777778888998888887777775422 3444555667777888899
Q ss_pred hHHHHHHHHhh----CCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 047873 147 DAQMVFDEFGK----RGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188 (464)
Q Consensus 147 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 188 (464)
.|+..+.+... ..+++-...+..|..+--..-...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 99888877632 3344444556666555443334444444433
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.59 E-value=63 Score=25.75 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=12.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 047873 352 IDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~ 373 (464)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3345555666666666655555
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.69 E-value=44 Score=22.73 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=17.2
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (464)
..|+.+.|.++++.+. +| +..|..++.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 3455555555555555 32 23455555555544443
No 404
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.56 E-value=1.6e+02 Score=29.19 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=104.5
Q ss_pred HHHHHHhcCCCCCh--hhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCh-----hcHHHHHHHHHcCCChhhHHHHH
Q 047873 46 FASILETRGTHLPG--LVLDALMIVYV-DLGFLDDAIQCFRLLRKHYFRIPA-----RGCRCLIDRMMRTNLPTVTLGFY 117 (464)
Q Consensus 46 ~~~~~~~~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~ 117 (464)
+..+++....+|.. .+...++..+. ...+++.|...+++.....-.++- .+-..++..+.+.+... |...+
T Consensus 44 L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l 122 (608)
T PF10345_consen 44 LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNL 122 (608)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 33334333555554 66677788776 678999999999987554322221 12234556666666655 99998
Q ss_pred HHHHhcCCC----CChhhHHHH-HHHHHhcCChhhHHHHHHHHhhCC---CCCCcccHHHHHHHHH--hcCChhHHHHHH
Q 047873 118 LEILDYGYS----PSVYVFNVL-MHKLCKEGKIKDAQMVFDEFGKRG---LHATAVSFNTLINGHC--KAKNLDEGFRLK 187 (464)
Q Consensus 118 ~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~ 187 (464)
++.++.--. +-...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+++.+.+
T Consensus 123 ~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 123 DKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 887753221 112223333 222333479999999998876542 2334444455555444 455567777777
Q ss_pred HHHhhCC---------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHH
Q 047873 188 SVMEGSG---------MRPDVYTYSALINGLC--KENRLDDAELLLHEM 225 (464)
Q Consensus 188 ~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 225 (464)
+.+.... ..|...+|..+++.++ ..|+++.+...++.+
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7663221 1345667777776554 567766666665554
No 405
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.37 E-value=63 Score=24.69 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=40.6
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 186 LKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 444555666655442 3456677777767777888888888776666656555566666665544
No 406
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.70 E-value=29 Score=21.81 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 384 NALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 384 ~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
-.++.+|...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555544
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.40 E-value=27 Score=32.28 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=63.5
Q ss_pred HHHhccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCC
Q 047873 318 SGFCRGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQ 395 (464)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 395 (464)
..+...+.++.|..++.++++.. || +..|..-..++.+.+++..|+.=+..+++.. |+ ...|---..++.+.++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 34455677777888887777753 43 3334444467777777777777777777652 22 2223333344555566
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047873 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429 (464)
Q Consensus 396 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 429 (464)
+.+|...|+.... +.|+..-+...+.-|-...
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHH
Confidence 6666666666553 5677776666666655443
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.86 E-value=22 Score=22.31 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
-.-.++.++...|++++|.+++..+.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334456666667777777666666554
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.72 E-value=46 Score=26.89 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC
Q 047873 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVS 445 (464)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p 445 (464)
+..++..+ ..|++.++..++.++...|+.++|.+.+++ ..+-|
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344443 579999999999999999999999999988 45566
No 410
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.53 E-value=1e+02 Score=26.28 Aligned_cols=175 Identities=9% Similarity=0.002 Sum_probs=109.9
Q ss_pred CCCCChhhHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhc---CC-
Q 047873 54 GTHLPGLVLDALMIVY-VDLGFLDDAIQCFRLLRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDY---GY- 125 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 125 (464)
+.+||...-|..-..- .+..++++|+.-|++..+....-- -.+...++....+.+++++..+.|.+++.. .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455554433322211 244589999999999987642222 234567888899999999999988887642 11
Q ss_pred -CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHhhC-----C
Q 047873 126 -SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHATA----VSFNTLINGHCKAKNLDEGFRLKSVMEGS-----G 194 (464)
Q Consensus 126 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 194 (464)
.-+....|.++..-....+.+.-...|+.-... .-..+. .|-..+...|...+.+.+..+++.++..+ |
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 124556677777777677766665555543221 001122 23356777888888888888888887643 1
Q ss_pred C------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 195 M------RPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 195 ~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
. ..-...|..-+..|....+-.....+|++....
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh
Confidence 1 111345666777888888888888888876543
No 411
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.94 E-value=55 Score=22.99 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLD 404 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 404 (464)
..++|..+-+.+...+- ....+-.+-+.++...|++++|..+.+.. ..||...|-.+.. .+.|..+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34556666555554321 11222222344556667777776665554 3466666655543 35565555555555
Q ss_pred HHHhCC
Q 047873 405 TMLDLG 410 (464)
Q Consensus 405 ~~~~~~ 410 (464)
+|-..|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555443
No 412
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.32 E-value=16 Score=23.18 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 108 (464)
.|++...+.+...++...-.++++..+.+....| ..+...|..-++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 3555677777888887778888888888888877 456667776666665543
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.30 E-value=1.4e+02 Score=27.26 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=42.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 047873 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC-KHGQLKNANMLLDTMLD 408 (464)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 408 (464)
.+..+.+.|.+..|.++.+-+...+..-|+.....+|+.|+ ++++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35667788888888888888888755446766777777665 67778877777777654
No 414
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.48 E-value=1.4e+02 Score=27.26 Aligned_cols=179 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhhC--CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC---------CCCCCH
Q 047873 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKR--GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS---------GMRPDV 199 (464)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 199 (464)
.+.-+..-|..+|+++.|++.|.+.+.- ........|-.+|....-.|+|.....+..+.... .+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 200 YTYSALINGLCKENRLDDAELLLHEMCERGLT------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
..+..+.+.+.+ ++..|.+.|-........ |...+....+.+++--++-+ --+.+.....-.....
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~------Lk~~vi~n~~Fk~fle 303 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQD------LKLNVIKNESFKLFLE 303 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHH------HHHHHHcchhhhhHHh
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEMIKR-----GIELDNVAFTALIS 318 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 318 (464)
-..-...++..++. +++..++++++++... -+.|...+.-.+|.
T Consensus 304 l~Pqlr~il~~fy~-sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 LEPQLREILFKFYS-SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred cChHHHHHHHHHhh-hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 415
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.97 E-value=1.1e+02 Score=25.80 Aligned_cols=104 Identities=5% Similarity=-0.118 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChh-----------hHHHHHHHHHhcCChh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-----------VLDALMIVYVDLGFLD 76 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~ 76 (464)
.+..--++-+.+.|++++|...|+.++. .+..+.- .-.|.+. .+......+...|++-
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~---------~l~~L~l--kEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y 247 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAII---------CLRNLQL--KEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY 247 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHH---------HHHHHHh--ccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH
Confidence 3444456778889999999999999872 1111111 1122222 2222333445556666
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 77 DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
++++.-.++.... +.+..+|..-..+....=+.++|..=|.++++.
T Consensus 248 evleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 248 EVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 6666666666654 345555555555555555566666666666653
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.96 E-value=64 Score=27.41 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----C-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 350 MVIDCFCKNGDTKTGFRLLKEMRSD----G-HLPAVETYNALMNGLCKHGQLKNANML 402 (464)
Q Consensus 350 ~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 402 (464)
.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444555555555555555555321 1 112223333444444455555544443
No 417
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.60 E-value=1.6e+02 Score=27.48 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=30.6
Q ss_pred CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-----hhHHHHHHHHhhCCCC
Q 047873 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI-----KDAQMVFDEFGKRGLH 161 (464)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~ 161 (464)
.++++.|+.++.++++.|..|....-..+..++-..|.- .-|...++.....|.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 467777888888888777665544444444444444422 2344445555555643
No 418
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.58 E-value=2e+02 Score=28.71 Aligned_cols=322 Identities=13% Similarity=0.040 Sum_probs=161.5
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (464)
...-......+.+.+++...+..+. ..+.+.........+....|+.++|......+=..| ...+..++.++..
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~ 172 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSV 172 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHH
Confidence 3344445556666677776665321 123456666677778888888877777776664444 3356677888888
Q ss_pred HHhcCChhHHH--HHHHHHhhCCCCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047873 174 HCKAKNLDEGF--RLKSVMEGSGMRPDVYTYSALINGLCK------------ENRLDDAELLLHEMCERGLTPNDVIFTT 239 (464)
Q Consensus 174 ~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (464)
+.+.|.+.... +-++.+...| +...-..+...+.. ..+...+..++.. +.++...-..
T Consensus 173 ~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~ 244 (644)
T PRK11619 173 WQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQM 244 (644)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHH
Confidence 77666554432 2222233222 22222222221100 0111111111111 1122222222
Q ss_pred HHHHHHhcCCcccccCHHHHHHHHHHHHhCC-CCCCH--HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047873 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDK--ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316 (464)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (464)
++-++.+..+. +.+.|..++....... ..+.. .+...+.......+...++...++....... +......-
T Consensus 245 ~~~~l~Rlar~----d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r 318 (644)
T PRK11619 245 AAVAFASVARQ----DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERR 318 (644)
T ss_pred HHHHHHHHHHh----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHH
Confidence 22233332221 3467888887764332 22221 2233333333333224555555555433321 33444444
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC------------CCC-------
Q 047873 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD------------GHL------- 377 (464)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~~~------- 377 (464)
+....+.++++.+...+..|.... .-...-.-.+.+++...|+.++|...|+.+... |.+
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~ 397 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDK 397 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCC
Confidence 445557778877777777764422 123334445666666678888888887776331 111
Q ss_pred -cCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 378 -PAVE------TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 378 -~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 439 (464)
|... .-..-+..+...|+...|...+..+.+. .+......+...-.+.|.++.++....
T Consensus 398 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 398 APKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0000 0112234566778888888888887763 344555555565667777776655543
No 419
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=58.37 E-value=69 Score=28.48 Aligned_cols=45 Identities=24% Similarity=0.171 Sum_probs=24.1
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.|.+++......|.++..+.+|++++..|..|-...-..++..+-
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555444444433
No 420
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.34 E-value=45 Score=32.35 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHH
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRSD--GHLPAVETYNALMNGLCKHGQLK------NANMLLDTMLDLGVVPDDITYNI 420 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~p~~~~~~~ 420 (464)
.+|+.+|...|++-.+.++++.+... |-+.=...+|..++.+.+.|.++ .|.++++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 37899999999999999999998876 33334567888899999988754 3344444433 5668888888
Q ss_pred HHHHHHh
Q 047873 421 LLEGHCK 427 (464)
Q Consensus 421 l~~~~~~ 427 (464)
++.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7766544
No 421
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.33 E-value=1.2e+02 Score=26.14 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH----HcCCCCCHHHHHHH-HHHHhccCChHHHHHHHHHHHHC----CCCCCHhhHH
Q 047873 279 TILLDGFCKEGDLESALDIRKEMI----KRGIELDNVAFTAL-ISGFCRGGKVVEAERMLREMLKV----GLKPDDATYT 349 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 349 (464)
..++..+.+.|++..|+.+...+. +.+-+|+..+...+ -.+|....+..++..-+..++.. -+||....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 457788899999999998765543 44444443332222 23455555666655555444322 1334333333
Q ss_pred HHHHHH--HhcCChHHHHHHHHHHHhC
Q 047873 350 MVIDCF--CKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 350 ~ll~~~--~~~~~~~~a~~~~~~~~~~ 374 (464)
-++.+- +...++..|...|-+..+.
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhc
Confidence 333332 3344566677666666553
No 422
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.50 E-value=1.8e+02 Score=27.85 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=11.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
++.-|.+.+++++|+.++..|.
T Consensus 414 L~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCC
Confidence 4444555555555555555443
No 423
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.71 E-value=78 Score=30.89 Aligned_cols=122 Identities=14% Similarity=0.136 Sum_probs=77.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 315 ALISGFCRGGKVVEAERMLREMLKVG--LKPDDATYTMVIDCFCKNGDTK------TGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
.++.+|...|++-++.++++.....+ -+.-...+|..++.+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999988653 2223457888899999999754 3444444443 34577788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHhcCCCCc
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH--CKHGNPEDFDKLQSEKGLVSD 446 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~p~ 446 (464)
+.+-..--.-.-..-++.+++... .+.++..+ ...=.+++..-++.++.+.-+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s-------~ngv~di~~~~~v~s~~ev~limd~l~i~~~ 164 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRS-------ANGVIDILMHESVFSPEEVKLIMDQLNIPIN 164 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhh-------hhhHHHHHhhhccCCHHHHHHHHHhcCCCCC
Confidence 776655433444445555555421 12233332 233356777777777554333
No 424
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.64 E-value=1.8e+02 Score=27.52 Aligned_cols=390 Identities=8% Similarity=0.020 Sum_probs=183.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
...-|...|...+..+.+.+.+.+.-.+|..|...+ |.++..|.........- -+.+.|..+|.+.++..+. ++..|
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw 177 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLW 177 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHH
Confidence 344477999999998888888999999999999886 55667776655544443 4489999999999987755 55555
Q ss_pred HHHHHH---HHhc--------C-ChhhH-HHHHHHHhh-CCCCCCcccH--HHH---HHHHHhcCChhHHH-HHHHHHhh
Q 047873 133 NVLMHK---LCKE--------G-KIKDA-QMVFDEFGK-RGLHATAVSF--NTL---INGHCKAKNLDEGF-RLKSVMEG 192 (464)
Q Consensus 133 ~~l~~~---~~~~--------~-~~~~a-~~~~~~~~~-~~~~~~~~~~--~~l---~~~~~~~~~~~~a~-~~~~~~~~ 192 (464)
-...++ ++.. | +...- .++-..-.. ....++...- ... ....-......+.. .+++.+..
T Consensus 178 ~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~ 257 (568)
T KOG2396|consen 178 KEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQS 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 433332 1110 0 00000 111000000 0001111110 000 00000001111111 12222222
Q ss_pred CCCCCCHHHHHHHHH----HHHh---------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 047873 193 SGMRPDVYTYSALIN----GLCK---------------ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA 253 (464)
Q Consensus 193 ~~~~~~~~~~~~l~~----~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (464)
+.+.++.++..+.. .+.. ..+.+...++|+...+. .|+...|+..|..|...-.....
T Consensus 258 -~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~ 334 (568)
T KOG2396|consen 258 -KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRG 334 (568)
T ss_pred -cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhh
Confidence 22334434432221 1111 01123445667666653 45666676677766554332111
Q ss_pred cCHHHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhCCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 047873 254 GDMKEARKIVDEMCTN-GLNPD-KITYTILLDGFCKEGDLES-ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330 (464)
Q Consensus 254 ~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (464)
..+.....+++..... +..++ ...|..+..+++......+ |..+..+. +.-+...|..-++...+..- ++.
T Consensus 335 ~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~~~kl~~~~~s~s--D~q 408 (568)
T KOG2396|consen 335 KRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMWQLKLQVLIESKS--DFQ 408 (568)
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHHHHHHHHHHhhcc--hhH
Confidence 1234455555555443 22332 3445555555554443332 33333232 23355555555554442211 222
Q ss_pred HHHHH----HHHCCCCCCHhhHHHHHHHHHhcCC-hHHH--HHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHH
Q 047873 331 RMLRE----MLKVGLKPDDATYTMVIDCFCKNGD-TKTG--FRLLKEMRSDGHLPAVETY-NALMNGLCKHGQLKNANML 402 (464)
Q Consensus 331 ~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~ 402 (464)
.++.. +...-..+-...++... .++ .... ..++...... ..|+..++ +.++..+.+.|-.++|..+
T Consensus 409 ~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~ 482 (568)
T KOG2396|consen 409 MLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKV 482 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHH
Confidence 22222 22211111112222222 233 2211 1122223332 33454444 6788888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHh----cCCCCchhHHHHhhccchhhhhc
Q 047873 403 LDTMLDLGVVPDDITYNILLEGHCKH--GNPEDFDKLQSE----KGLVSDYACYTSLVSKSSKYRQK 463 (464)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~----~~~~p~~~~~~~ll~~~~~~~~~ 463 (464)
+..+... .+|+...|..++..-..+ -+..-++++++. .| .|+..|--.++.-.++|.+
T Consensus 483 y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~ 546 (568)
T KOG2396|consen 483 YKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRP 546 (568)
T ss_pred HHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCc
Confidence 9999875 355777777777543211 124444555443 45 5666666655554455443
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.58 E-value=26 Score=30.29 Aligned_cols=44 Identities=9% Similarity=-0.064 Sum_probs=29.5
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 97 (464)
.+.||. .-|+..|..-.+.||+++|+.++++..+.|..--..+|
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344555 55667777777888888888888888777754333333
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.37 E-value=64 Score=22.28 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 047873 386 LMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 386 l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
+.......|++++|...+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3445556677777777777765
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.29 E-value=39 Score=19.82 Aligned_cols=31 Identities=10% Similarity=0.325 Sum_probs=15.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLI 241 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 241 (464)
+.|-.+++..+++.|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555444444444433
No 428
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.08 E-value=67 Score=22.44 Aligned_cols=49 Identities=12% Similarity=-0.080 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhH
Q 047873 401 MLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYAC 449 (464)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~ 449 (464)
+.+++....+....+-....|.-.|++.|+.+.|.+-++. ..+-|...+
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 3344443333332333334444445555555555444443 344444333
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.02 E-value=42 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455666666666666666666666554
No 430
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.01 E-value=2.6e+02 Score=29.74 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..-|...++++-++|-.+.+.++--.++..-+ ...|.. .+.+.+.+.+...|.+-+|...+-+.
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~---------------dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n 1047 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLP---------------DDNPSVALISTTVFNHHLDLGHWFQAYKAILRN 1047 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---------------CcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC
Confidence 44566778888888888888888777764322 111222 56778888888889888887776432
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhh------------HHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTV------------TLG-FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (464)
... .........++-.++..|.++. ... +++..-+..+......|+.|-..+...+++.+|-.++
T Consensus 1048 pds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1048 PDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred CcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 111 1112345667777777776653 333 3333334444444556676766778889998876654
Q ss_pred HH
Q 047873 153 DE 154 (464)
Q Consensus 153 ~~ 154 (464)
-+
T Consensus 1126 YE 1127 (1480)
T KOG4521|consen 1126 YE 1127 (1480)
T ss_pred HH
Confidence 33
No 431
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.87 E-value=1.4e+02 Score=25.90 Aligned_cols=75 Identities=19% Similarity=0.036 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh------cC-----ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCK------AK-----NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 216 (464)
--+..++..+...+....++...+.++.. +| -..+|.++|.-+..+. -...+-..++.++....+..
T Consensus 106 LnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~k 183 (361)
T COG3947 106 LNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEK 183 (361)
T ss_pred HHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchh
Confidence 33444444433223344556666655541 11 1357788888777652 22334455666666666666
Q ss_pred HHHHHHHH
Q 047873 217 DAELLLHE 224 (464)
Q Consensus 217 ~a~~~~~~ 224 (464)
+|...+..
T Consensus 184 ka~s~lhT 191 (361)
T COG3947 184 KASSLLHT 191 (361)
T ss_pred hHHHHHHH
Confidence 66665544
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.75 E-value=85 Score=26.64 Aligned_cols=63 Identities=21% Similarity=0.001 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..+...|...|++++|.++|+.+...-. +..-..+...+...+...+.+.|+.+..+.+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr------------~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYR------------REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH------------hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3567788889999999999988863110 00011222245555677777778777777664443
No 433
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.66 E-value=1.5e+02 Score=26.14 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHhh
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
|.-+..+.|+..+|.+.|+++.+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhh
Confidence 33334445566666666555543
No 434
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.09 E-value=75 Score=22.38 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
.++|..+-+.+...+- ....+--+-+..+...|+|++|..+.+.+- .||...|..|.. .+.|-.+++..-+..
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4455555555544321 012222222334456666777666665542 566666555443 245555555555555
Q ss_pred HHHCC
Q 047873 225 MCERG 229 (464)
Q Consensus 225 ~~~~~ 229 (464)
+...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55543
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.72 E-value=2.8e+02 Score=28.78 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCC-CcccHHHHHHHHHhcCCh--hHHHHHHHHHhhCCCCC--------
Q 047873 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKRG--LHA-TAVSFNTLINGHCKAKNL--DEGFRLKSVMEGSGMRP-------- 197 (464)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~-------- 197 (464)
-|..|+..|...|..++|++++.+..... ..+ -...+..++..+-+.+.. +-.+++-+...+.....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46778888888888888888888876632 011 112233355555554443 55555544444321000
Q ss_pred CH---HHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047873 198 DV---YTY-SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247 (464)
Q Consensus 198 ~~---~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (464)
+. .+. ...+-.|......+-+..+++.+....-.++....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 00 000 112334667777888888998888765555677777777777653
No 436
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.05 E-value=1.3e+02 Score=26.73 Aligned_cols=89 Identities=11% Similarity=-0.087 Sum_probs=42.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC---CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHY---FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
.+-|.+..++..|...|.+-.... ...+...|..-..+-...|++..++.=....+...+. ....|-.-..++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHH
Confidence 334555555555555555544331 1112333444444444455555555555555554433 333443444445555
Q ss_pred CChhhHHHHHHHH
Q 047873 143 GKIKDAQMVFDEF 155 (464)
Q Consensus 143 ~~~~~a~~~~~~~ 155 (464)
.+++.|....++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 5555555554444
No 437
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.80 E-value=1e+02 Score=23.54 Aligned_cols=50 Identities=8% Similarity=0.160 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047873 379 AVETYNALMNGLCKHGQ-LKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428 (464)
Q Consensus 379 ~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (464)
+...|.+++.+..+..- .-.+..+|+-+.+.+.++++.-|..++.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455566665554444 334455555555555566666666666665543
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.05 E-value=1.4e+02 Score=24.95 Aligned_cols=172 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|+|......+++.+...+--.. -+..+ ++..+++.-...+ ....+
T Consensus 23 P~s~~~L~~Ll~~i~~~~~~~~----~K~~l--------------------------~~YlLlD~~~~~~-----~~~~~ 67 (226)
T PF13934_consen 23 PKSDNDLRALLDLILSSNVSLL----KKHSL--------------------------FYYLLLDLDDTRP-----SELAE 67 (226)
T ss_pred ccCHHHHHHHHHHHhcCCcCHH----HhHHH--------------------------HHHHHHhcCcccc-----ccHHH
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
+....-.-|....-..-+-.+...+++++|.+.+ ..+...+..-..++.++...|+.+.|..++..+.-. ..+
T Consensus 68 ~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s 140 (226)
T PF13934_consen 68 SFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSS 140 (226)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCC
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCChhHHHHH
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC----KENRLDDAELL 221 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~ 221 (464)
......++.. ..++.+.+|+.+.+...+ ......+..++..+. +.+..++...+
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 439
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.74 E-value=1e+02 Score=23.23 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 342 KPDDATYTMVIDCFCKNGD---TKTGFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 342 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.++..+--.+..++.+..+ ..+.+.+++.+.+...+- .-...--+.-++.+.++++++.++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555666665543 455566666666521111 112222334456667777777777766665
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.74 E-value=78 Score=21.59 Aligned_cols=67 Identities=6% Similarity=-0.052 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 77 DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
.+.++++.+.+.|+ .+......+-.+--..|+.+.|.+++..+. .|+ ..|...+.++...|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 34566666666663 233334433333335677888888888776 443 36677777777777655543
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.26 E-value=1.3e+02 Score=26.27 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----------cCCHHHH
Q 047873 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----------HGQLKNA 399 (464)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 399 (464)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+... +.-|..++..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777777778888888877777777777888888888888763 2235555555542 3566655
Q ss_pred HHHHHH
Q 047873 400 NMLLDT 405 (464)
Q Consensus 400 ~~~~~~ 405 (464)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 555543
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.13 E-value=1.1e+02 Score=26.75 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----------cCChHHH
Q 047873 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----------NGDTKTG 364 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~~~~~~a 364 (464)
.++++.+...++.|.-..+.-+.-.+.+.=.+.+++.+|+.+... ..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456777777777777777776666677777777777777777653 2224444444432 4677766
Q ss_pred HHHHHHH
Q 047873 365 FRLLKEM 371 (464)
Q Consensus 365 ~~~~~~~ 371 (464)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6665543
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.76 E-value=34 Score=17.18 Aligned_cols=15 Identities=7% Similarity=0.064 Sum_probs=7.9
Q ss_pred ChhHHHHHHHHHHhC
Q 047873 74 FLDDAIQCFRLLRKH 88 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~ 88 (464)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555544
No 444
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.50 E-value=64 Score=20.27 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=28.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 047873 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH-----CKHGNPEDFDKLQ 438 (464)
Q Consensus 390 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~ 438 (464)
+...|++=+|-++++.+=.....+....+..+|... .+.|+.+.|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 456777777777777775432233455555555543 3667777776654
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.89 E-value=31 Score=25.72 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=18.3
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (464)
..|.-..|.++|..|..+|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34455566777777777765554 35555543
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.85 E-value=42 Score=29.10 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047873 384 NALMNGLCKHGQLKNANMLLDTMLDLGVV 412 (464)
Q Consensus 384 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 412 (464)
+..|..-.+.||+++|+.+++++.+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44555555555555555555555555444
No 447
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=48.66 E-value=40 Score=18.65 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
..|..|+..-..+++|++|.+=|++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678899999999999999999999883
No 448
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.25 E-value=64 Score=23.12 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=23.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
.+++.+.+|...++|+++.+-|.++| ..+...
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 45666778888888888888888887 445443
No 449
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.20 E-value=2.1e+02 Score=25.52 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHH
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 294 (464)
++++..++++....+. |.+......|.++..........++.....+|+-+.....+| +++.|..+ +..+..-+..+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHhH
Confidence 4556666666655543 566666666655544433333445666666666666544333 22333322 23333445555
Q ss_pred HHHHHHHHHcCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 295 LDIRKEMIKRGIELDNVA-FTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
+.+.+.+...+---+... +..-...+.+.|+.++|..-|++....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 655555554421111122 222344555666666666666666554
No 450
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.02 E-value=28 Score=25.91 Aligned_cols=16 Identities=19% Similarity=0.551 Sum_probs=7.4
Q ss_pred HHHHHHHHHhcCCCCC
Q 047873 113 TLGFYLEILDYGYSPS 128 (464)
Q Consensus 113 a~~~~~~~~~~~~~~~ 128 (464)
|..+|++|++.|-+||
T Consensus 114 aY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 114 AYAVFRKMLERGNPPD 129 (140)
T ss_pred HHHHHHHHHhCCCCCc
Confidence 3444555555544333
No 451
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=45.59 E-value=2.3e+02 Score=25.44 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH-HHHHHHHHHCCCCCCHhhHHHHHHHH
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA-ERMLREMLKVGLKPDDATYTMVIDCF 355 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (464)
....+.+.+++.++.+.+..+-+.+... ......++..++....-.+.. ..+.+.+... ||......++++.
T Consensus 168 GLQGIAD~~aRl~~~~~~~~l~~al~~l----P~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAl 240 (340)
T PF12069_consen 168 GLQGIADICARLDQEDNAQLLRKALPHL----PPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRAL 240 (340)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhhC----ChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 3455778888888888766666555543 334566666666555544443 3444444443 7999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047873 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN-GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427 (464)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (464)
+...........+..+.......+......+.. +.....+.+....+++++-. .+|...|+.+..-+..
T Consensus 241 s~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~---~~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 241 SSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQ---QDDQALFNQLFADLVM 310 (340)
T ss_pred cCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHc---ccHHHHHHHHHHHHHh
Confidence 887776666665777777644345554444432 22334455556666666553 2335555555544443
No 452
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.55 E-value=2.1e+02 Score=24.95 Aligned_cols=88 Identities=17% Similarity=0.071 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----C--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE-----N--RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
+..+|..+|+..-+.|..+...+...+...|..- - +...|...|.+....+ +......+...|.. | ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~-G-~G 202 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEK-G-LG 202 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHc-C-CC
Confidence 5566666666666655332222233333333322 1 2236777777776664 33334444433333 2 22
Q ss_pred cccCHHHHHHHHHHHHhCCC
Q 047873 252 MAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~ 271 (464)
...+.++|...|......|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 34566777777777777654
No 453
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=45.36 E-value=2.5e+02 Score=25.98 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=105.6
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhcHHHHHHHHHcCCChhhH-----HHHHHHHHhcCC
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH--YFRIPARGCRCLIDRMMRTNLPTVT-----LGFYLEILDYGY 125 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a-----~~~~~~~~~~~~ 125 (464)
...||. ..|+.+.+.-.++--.++.++..+.+... +-.|-..-..+++..||+.++.+=. +.+++.+.....
T Consensus 49 ~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l 128 (669)
T KOG3636|consen 49 SMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL 128 (669)
T ss_pred cCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC
Confidence 445555 77777766555554455555665555322 1112223456777788877654321 344444444433
Q ss_pred CCChhhHHHH---HHHHH-----hcCChhhHHHHHHH---------HhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 047873 126 SPSVYVFNVL---MHKLC-----KEGKIKDAQMVFDE---------FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188 (464)
Q Consensus 126 ~~~~~~~~~l---~~~~~-----~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 188 (464)
|....||.. ..-|. ..|++-...+++-. +....+.||..+.|.+...++..-..+-...+++
T Consensus 129 -prsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~Wd 207 (669)
T KOG3636|consen 129 -PRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWD 207 (669)
T ss_pred -CcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444432 22222 22333333333322 2234578899998888888888777888888888
Q ss_pred HHhhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047873 189 VMEGSGMRPDVYTYSALING--------LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (464)
-..+.+ .|=.+-+.+++-. -.+...-++++++++.|...--.-|..-+-.+...|+..
T Consensus 208 lY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 208 LYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred HHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhhc
Confidence 877765 3333333333211 123455678999998887552222555566666666543
No 454
>PRK14700 recombination factor protein RarA; Provisional
Probab=45.10 E-value=2.1e+02 Score=25.05 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC
Q 047873 205 LINGLCK---ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 205 l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (464)
++.++.+ -.|.+.|+-++..|.+.|..|....-..++.++..-|..+ ......|...++....-|.
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAd-P~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNAD-PQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHhCC
Confidence 4444433 4567777778888888777766666666666666666554 1122233344444444444
No 455
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.96 E-value=1.9e+02 Score=24.39 Aligned_cols=160 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF-CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK-- 357 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-- 357 (464)
++..+-+.++++++...+.++...+...+..--+.+..+| ...|....++.++..+....-.-.......++..|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHH---hCCCCCCHHH
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ-----------------LKNANMLLDTML---DLGVVPDDIT 417 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~---~~~~~p~~~~ 417 (464)
..+...-..-+-.+++..+.|....-.+.+-.+--.|+ .+.|.+.|+.+. +..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHH-----hcCCHHHHHHHHHh
Q 047873 418 YNILLEGHC-----KHGNPEDFDKLQSE 440 (464)
Q Consensus 418 ~~~l~~~~~-----~~g~~~~a~~~~~~ 440 (464)
+-.++-.|+ ..|+.++|.++.++
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~ 194 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQ 194 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHH
No 456
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.96 E-value=46 Score=17.61 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 22 MHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALM 66 (464)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 66 (464)
.++.|..+|++.+ ...|+..+|...+
T Consensus 2 E~dRAR~IyeR~v-------------------~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFV-------------------LVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHH-------------------HhCCCchHHHHHH
Confidence 4678888888887 4567777776543
No 457
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.84 E-value=2.5e+02 Score=25.79 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=25.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 047873 286 CKEGDLESALDIRKEMIKRGIELDNV--AFTALISGFC--RGGKVVEAERMLREMLK 338 (464)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 338 (464)
.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 333332 2333333332 24455566666655544
No 458
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.79 E-value=1.6e+02 Score=24.05 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-cHHHHHHHHHcCCChhhH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR-GCRCLIDRMMRTNLPTVT 113 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 113 (464)
...+.++..+...|+++.|-++|.-+.+.. +.|.. .|..-+..+.+.+.....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~ 95 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSE 95 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchH
Confidence 355678888888999999999999888764 34432 344444555555444433
No 459
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.72 E-value=2.3e+02 Score=25.37 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 111 TVTLGFYLEILDYGYSPS----VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
++...++..+++.= |+ +.-|--+++.....|.++.++.+|++....|..|=...-..++..+-
T Consensus 120 eei~~~L~~li~~I--P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNI--PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46777777776632 34 34577788888889999999999999999988887777777777765
No 460
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.04 E-value=2.7e+02 Score=25.84 Aligned_cols=113 Identities=18% Similarity=0.128 Sum_probs=48.9
Q ss_pred HHHHHcCCChhhHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVY--VFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
+...+..|+.+ +.+.+++.|..|+.. .....+...+..|+.+.+..+++.-....-..+.. -.+.+...+..|
T Consensus 39 L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~ 113 (413)
T PHA02875 39 IKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILK 113 (413)
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhC
Confidence 33444556554 334444455444322 11234555667777766655554321110000111 123344445556
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHH
Q 047873 179 NLDEGFRLKSVMEGSGMRPDVYT--YSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 222 (464)
+.+ +++.+.+.|..|+... -...+...+..|+.+-+..++
T Consensus 114 ~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 114 KLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 654 4444445554443221 112344455667655444443
No 461
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.00 E-value=2.1e+02 Score=24.58 Aligned_cols=216 Identities=10% Similarity=0.002 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCChhcHH
Q 047873 22 MHSQARDLLHLIVSKKGMG-SSASLFASILETRGTHLPG-LVLDALMIVYVDL-GFLDDAIQCFRLLRKHYFRIPARGCR 98 (464)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ 98 (464)
+|+++...|+.++.+.... .+-.+...++ ...|-+ .+|.---..+... .+..+-++.++++.... +-+-..|.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i---~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWH 116 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAI---RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWH 116 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHH---HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHH
Confidence 4555555555555333222 1112222222 345555 6665443333332 35777788888887775 44555554
Q ss_pred HHHHHHHcCCChh-hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh-
Q 047873 99 CLIDRMMRTNLPT-VTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK- 176 (464)
Q Consensus 99 ~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 176 (464)
--=......|++. +-+++...|+....+ +-.+|..--.++...+.++.-+...+++.+.++. |-.+||.-.-....
T Consensus 117 HRr~ive~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~ 194 (318)
T KOG0530|consen 117 HRRVIVELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNT 194 (318)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEec
Confidence 3333333446776 778888899885554 7778887777888888899999998888877643 44455432211111
Q ss_pred cCCh-----hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047873 177 AKNL-----DEGFRLKSVMEGSGMRPDVYTYSALINGLCK-EN--RLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244 (464)
Q Consensus 177 ~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (464)
.|-. +.-+.+...++.. ++.+...|+-|...+-. .| .......+...+...-...++.....++..|
T Consensus 195 ~~~~~~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 195 KGVISKAELERELNYTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred cCCccHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 1111 1222233333333 35566777777666654 33 1223333333333111122444444555555
No 462
>PRK14700 recombination factor protein RarA; Provisional
Probab=43.46 E-value=2.3e+02 Score=24.89 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHH---cCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh-----hHHHHHHHHhhCCC
Q 047873 97 CRCLIDRMM---RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK-----DAQMVFDEFGKRGL 160 (464)
Q Consensus 97 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~ 160 (464)
+..++.++. +-.+++.|+-++.+|++.|-.|....-..++.++-..|.-+ .|...++....-|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 333444443 34677777777778887776666655555665665566432 34445555555564
No 463
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.35 E-value=3.5e+02 Score=29.21 Aligned_cols=154 Identities=13% Similarity=-0.024 Sum_probs=82.1
Q ss_pred HHHHHhcCChhHHHH------HHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHH-------hcCCCCChhhH
Q 047873 66 MIVYVDLGFLDDAIQ------CFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-------DYGYSPSVYVF 132 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~ 132 (464)
.......|.+.+|.+ ++...-..-.+.....|..+...+-+.++.++|+..-.+.. .....-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 334455566666666 55533222223445667777777778888888877654432 11111233445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC-------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC--CCC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR-------GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-----GM--RPD 198 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~ 198 (464)
..+.......++...|...+.+.... ..+|...+++.+-..+...+.++.|.+.++.+... |. -.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 55555555566666676666655432 12333444455444455556777777777766542 10 123
Q ss_pred HHHHHHHHHHHHhcCChhHHH
Q 047873 199 VYTYSALINGLCKENRLDDAE 219 (464)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~a~ 219 (464)
..++..+.+.+...+++..|.
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHH
Confidence 444555555555555554444
No 464
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.51 E-value=2e+02 Score=24.06 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCC
Q 047873 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL 341 (464)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 341 (464)
+.+.....|-.-...++..++--+...|+++.|+++.+.++++|.+.....-..+-..++ ++..+........|-
T Consensus 70 ~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va-----eev~~~A~~~~~ag~ 144 (230)
T PHA02537 70 WVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA-----EEVANAALKAASAGE 144 (230)
T ss_pred HHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH-----HHHHHHHHHHHHcCC
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH---------HhcCCHHHHHHHHHHHH----h
Q 047873 342 KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL---------CKHGQLKNANMLLDTML----D 408 (464)
Q Consensus 342 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~----~ 408 (464)
+.++.....+...-.....+++...-+ |..+...+ ...++...|..++++.. +
T Consensus 145 ~~e~~~~~~~~~l~~~~dmpd~vrAKl--------------~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 145 SVEPYFLRVFLDLTTEWDMPDEVRAKL--------------YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CCChHHHHHHHHHHhcCCCChHHHHHH--------------HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 047873 409 LGVVPDDITYNILLEGHCKH 428 (464)
Q Consensus 409 ~~~~p~~~~~~~l~~~~~~~ 428 (464)
.|++.+..-....+++..+.
T Consensus 211 ~GVK~~i~~l~~~lr~~~~~ 230 (230)
T PHA02537 211 CGVKKDIERLERRLKALAES 230 (230)
T ss_pred CChHHHHHHHHHHHhhcccC
No 465
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.70 E-value=1.6e+02 Score=22.55 Aligned_cols=82 Identities=4% Similarity=0.075 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCChhcHHHHHHHHHcCCC-hhhHHHHHHHHHhcCCCCChhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF-----RIPARGCRCLIDRMMRTNL-PTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
...+.++......+++...+.+++.+..... ..+...|..++..+..... --.+..+|..+.+.+.+.++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4456666666667777777777776632210 1233445555555533333 223344455555444455555555
Q ss_pred HHHHHHHh
Q 047873 134 VLMHKLCK 141 (464)
Q Consensus 134 ~l~~~~~~ 141 (464)
.++.++.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 55544443
No 466
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.26 E-value=1.4e+02 Score=21.90 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH---hcCCCChHHHHHHHHHhcCCCCCh-hhHHHHH----HHHHhcCChhHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVS---KKGMGSSASLFASILETRGTHLPG-LVLDALM----IVYVDLGFLDDA 78 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~----~~~~~~g~~~~A 78 (464)
...+..|-.++..-|+|++++.--...+. ++| ..+.|. ..|...+ .++-..|+.++|
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG---------------EL~qdeGklWIaaVfsra~Al~~~Gr~~eA 119 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG---------------ELHQDEGKLWIAAVFSRAVALEGLGRKEEA 119 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-----------------TTSTHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc---------------ccccccchhHHHHHHHHHHHHHhcCChHHH
Confidence 34567788899999999998877666551 222 344455 5554433 356677888888
Q ss_pred HHHHHHH
Q 047873 79 IQCFRLL 85 (464)
Q Consensus 79 ~~~~~~~ 85 (464)
++.|+..
T Consensus 120 ~~~fr~a 126 (144)
T PF12968_consen 120 LKEFRMA 126 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888753
No 467
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.06 E-value=1.3e+02 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.6
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666666666666777766666655
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.96 E-value=1e+02 Score=22.18 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=21.0
Q ss_pred HHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
+..+...+..-.|.++++.+.+.++..+..|....+..+.+.|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444445555555555555444444444444444444443
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.78 E-value=3.4e+02 Score=26.15 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGY-SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
...++.-|.+.++.++|+.++..|-=... ..--...+.++..+.+..--++.+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 44577789999999999999887642111 012234455666666665555666666666544
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.77 E-value=2.9e+02 Score=25.38 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDV--IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
.+...+++..|.++|+.+... ++++.. .+..+..+|..=..+ ++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~f----d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRF----DHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHH
Confidence 344667777777777777665 333333 333444444432222 356777777766543
No 471
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.30 E-value=4.7e+02 Score=27.61 Aligned_cols=254 Identities=12% Similarity=0.010 Sum_probs=140.6
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
.++..+-...+..+.+.+..+ +...+..+.+ .++...-...+.++.+.+........+..+.+. +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 457777777777777777544 4444444443 334444444445554443221222333333332 466665566
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (464)
+..+...+.. ....+.. ... .+|...-...+.++.+.+..+. + ..+. -.++...-...+.++
T Consensus 705 ~~aL~~~~~~-------~~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 705 LDVLRALRAG-------DAALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred HHHHHhhccC-------CHHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHHHHHHH
Confidence 6666554422 1122222 222 3455555556666666554432 1 1222 234666666667777
Q ss_pred hccCChHH-HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 321 CRGGKVVE-AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 321 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
...+..+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+. ++...=...+.++.+.+. +++
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a 839 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVA 839 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cch
Confidence 77665433 3455556554 357778888888898888876555555555554 455555567777777765 456
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchhH
Q 047873 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYAC 449 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~ 449 (464)
...+..+.+ .|+..+-...+.++.+.+....+...+...--.+|..+
T Consensus 840 ~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 840 VPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 666666653 57888888888888876333445555444222444443
No 472
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.15 E-value=8.1e+02 Score=30.30 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=15.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..+-.|.+.|.+++|..+|++..
T Consensus 2487 ~~a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2487 MVALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHH
Confidence 34445677777777777777754
No 473
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.73 E-value=2.2e+02 Score=23.70 Aligned_cols=22 Identities=9% Similarity=0.213 Sum_probs=12.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 047873 351 VIDCFCKNGDTKTGFRLLKEMR 372 (464)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~ 372 (464)
-+......|+.+.|.+..+.+-
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444556666666666655543
No 474
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.53 E-value=4e+02 Score=26.54 Aligned_cols=19 Identities=16% Similarity=-0.088 Sum_probs=10.8
Q ss_pred CChhhHHHHHHHHHhcCCC
Q 047873 108 NLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~ 126 (464)
|+...++.+++++...|..
T Consensus 264 ~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 264 GDGRTVVETADELRLNGLS 282 (618)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 5555666666666555543
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.26 E-value=89 Score=22.51 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 047873 351 VIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396 (464)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (464)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455555666666666654444444444444555555543
No 476
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=38.07 E-value=97 Score=27.86 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
.|++.|.++|.|++|+++...+.
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHH
Confidence 57899999999999999988765
No 477
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.01 E-value=2.5e+02 Score=23.82 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=50.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHC------CCCCCHh-----------hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKV------GLKPDDA-----------TYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+...-.+-+.+.|++.+|..-|.++... .-+|-.. .+...-+++...|++-++++.-.++...
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444455567788888888888776421 1122211 1222333444556666666666666554
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.+-+...|-.-..+.+..=+.++|..=|...++
T Consensus 260 -~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 260 -HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred -CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 222444444444444445555666666665554
No 478
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.83 E-value=3.4e+02 Score=25.31 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET 52 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (464)
.+..=++..|.|+.|.+++++=+---.+.+-..+|..+...
T Consensus 123 ~laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~ 163 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQA 163 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCC
T ss_pred CcHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHh
Confidence 45556788999999999999865444556666666666643
No 479
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.76 E-value=1.1e+02 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=22.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 95 (464)
.+++.+.+|.--++|+++++-+.++| ..+.+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 45666777888888888888888777 44443
No 480
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=37.52 E-value=3.2e+02 Score=26.37 Aligned_cols=30 Identities=0% Similarity=-0.027 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCC
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 127 (464)
...++... ..|+...|+.+++++...|..|
T Consensus 261 if~L~~ai-~~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 261 IIEFVEYI-IHRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 33344443 3377777777777777776543
No 481
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.88 E-value=3.1e+02 Score=24.53 Aligned_cols=95 Identities=8% Similarity=-0.077 Sum_probs=67.0
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC-cccHHHHH
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYS---PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLI 171 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 171 (464)
.|.-=+.-|.+.+++..|...|.+.++.... .+...|+.-..+-.-.|++..|+.=....... .|+ ...|--=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 3444566788999999999999998875432 34566776666777788998888877777665 333 33444445
Q ss_pred HHHHhcCChhHHHHHHHHHhh
Q 047873 172 NGHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~ 192 (464)
.++.....+..|..+.++...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 566777888888888877653
No 482
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.86 E-value=1.2e+02 Score=26.66 Aligned_cols=75 Identities=5% Similarity=-0.058 Sum_probs=42.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHH-HHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 57 LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC-LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
.|...|...+.-..+.|.+.+.-.+|....... |.++..|.. --.-+...++.+.+..+|.+.++.+.. ++..|-
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~ 180 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWI 180 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHH
Confidence 344666666655556666666666666666654 445555543 223344556667777777766665544 444443
No 483
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.47 E-value=2.4e+02 Score=23.05 Aligned_cols=61 Identities=8% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
...+.+++.+..+|+++.|-+.|.-++... +.|. ..|..=+..+.+.+.-....+.++.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~------------------~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP------------------EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC------------------CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 345788999999999999999999988432 2233 467666666766666555555555543
No 484
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=36.28 E-value=2.1e+02 Score=22.52 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC
Q 047873 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (464)
+.+.|+-.+..|++.|..|....-..++.+...-|.-+ ...+..+...++.....|.
T Consensus 3 D~dAAlywlarml~~GeDp~~i~RRL~i~AsEDIGlAd-P~Al~~a~aa~~a~~~iG~ 59 (168)
T PF12002_consen 3 DPDAALYWLARMLEGGEDPRFIARRLIIIASEDIGLAD-PQALSIAVAAYQAVERIGM 59 (168)
T ss_dssp -HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTGGGS-TCHHHHHHHHHHHHHHH-C
T ss_pred ChHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccC-ccHHHHHHHHHHHHHHHCC
Confidence 45667777777777765544444444444444444433 1122334444444444444
No 485
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.09 E-value=6e+02 Score=27.60 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=87.4
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047873 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM-------IKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334 (464)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (464)
++.+.-..-.++....|..+...+.+.++.++|+..-... ...+..-+...|..+...+...+....|...+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 5554333323344567788888888899998888765432 222222234456666666666668888888877
Q ss_pred HHHHC-----C--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCcCHHHHHHHHHHHHhcCCHHHHH
Q 047873 335 EMLKV-----G--LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-----G--HLPAVETYNALMNGLCKHGQLKNAN 400 (464)
Q Consensus 335 ~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~ 400 (464)
+.... | .+|...+++.+-..+...++++.|.++.+.+... + ...+..++..+.+.+...+++..|.
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 77643 1 2344445555555555667888888888877664 1 1234556677777777777776665
Q ss_pred HHH
Q 047873 401 MLL 403 (464)
Q Consensus 401 ~~~ 403 (464)
...
T Consensus 1120 ~~e 1122 (1236)
T KOG1839|consen 1120 EHE 1122 (1236)
T ss_pred HHH
Confidence 544
No 486
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=36.00 E-value=5.3e+02 Score=26.98 Aligned_cols=66 Identities=11% Similarity=-0.088 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 249 (464)
.+.|.++.+.--.-|..++..-...+...|++..+.+++.++.+. +-.++...|..++..+...|.
T Consensus 1216 ~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1216 NENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred HHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 344444443322235555565666677788899999988888763 455666677666666666653
No 487
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.59 E-value=3e+02 Score=23.94 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 047873 328 EAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 375 (464)
.|...+.++-..+ +......+...|.. ..+.++|...|....+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555543 22233333333322 235566666666666654
No 488
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.47 E-value=4.4e+02 Score=25.90 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
....+.++.+-+-.+......++..|.+.|-.+.|..+.+.+-..- ....-|..-+..+.+.|+......+-+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555555444466667777888888888888888887765432 1234456666667777776666655555543
No 489
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=35.47 E-value=1.7e+02 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCC
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGS 41 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 41 (464)
.-+.++|+..+|+++.+.++...|...
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 457789999999999999997666444
No 490
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.26 E-value=1.2e+02 Score=19.32 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVG 340 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (464)
..++.++..+++..-.++++..+.++...|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444455555555555444
No 491
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.81 E-value=4.3e+02 Score=25.56 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=19.9
Q ss_pred ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC
Q 047873 93 PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS 128 (464)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 128 (464)
+......++.++. .++.+.++.+++++...|..+.
T Consensus 245 ~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 245 EPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3333444444433 3667777777777777765543
No 492
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.63 E-value=1.4e+02 Score=19.77 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYV 70 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 70 (464)
..+-...--+=..|++.+|+..|+..+ ..+..++......+....|...+.-|.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aI---------e~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAI---------EVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---------HHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 344444555678999999999999987 345555543222222244555554443
No 493
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=34.61 E-value=2.3e+02 Score=24.07 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
++.+...+..++...|+...+..+++.+..
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 555555555666666677777777776653
No 494
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.41 E-value=1.8e+02 Score=26.70 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 168 NTLINGHCKAKNLDEGFRLKSVMEGS--GMRPD-VYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 168 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
--|++.+.-.|+.+...+.++.+.+. |..|. .+| -.+.-+|.-.+++.+|.+.|-...
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788877777777776643 22232 233 346777888888888888887664
No 495
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=34.31 E-value=3.1e+02 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLI 33 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 33 (464)
|.++.-|-..+.-|.-.+++++|+++.+-.
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv 599 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFV 599 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhc
Confidence 344455555556666666777776665443
No 496
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.31 E-value=3.4e+02 Score=24.17 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=45.1
Q ss_pred HHHhhCCCCCCcccHH--HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 153 DEFGKRGLHATAVSFN--TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT---YSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 153 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
+.+.+++ .+..+|. .+..+..+.|+..+|.+.++.+.+. .|-... ...++.++....-+..+..++.+..+
T Consensus 264 da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 264 EAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred hhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444443 3555553 3455556789999999999988764 232222 23567777777666666777666655
Q ss_pred CC
Q 047873 228 RG 229 (464)
Q Consensus 228 ~~ 229 (464)
..
T Consensus 340 is 341 (556)
T KOG3807|consen 340 IS 341 (556)
T ss_pred cc
Confidence 43
No 497
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.27 E-value=1.1e+02 Score=22.32 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=22.3
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
.++..+...+.+-.|.++++.+.+.++..+..|.-..+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444444444555566666666655555444444444444444443
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.86 E-value=2.5e+02 Score=22.19 Aligned_cols=48 Identities=6% Similarity=-0.088 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
..++..+...+..-.|.++++.+.+.++..+..|....+..+.+.|-+
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344444444555566666666666666555555544445555555543
No 499
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=32.24 E-value=3.7e+02 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
.+.||...+..+...|.+.=-.+-|.++++-.
T Consensus 469 ~l~PDiylidwiftlyskslpldlacRIwDvy 500 (586)
T KOG2223|consen 469 ELTPDIYLIDWIFTLYSKSLPLDLACRIWDVY 500 (586)
T ss_pred cCCCchhhHHHHHHHHhccCChHHhhhhhhee
Confidence 34444444444444444444444444444433
No 500
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=32.19 E-value=2.6e+02 Score=23.67 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=42.6
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-------------CC---------C---CHHH
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-------------MR---------P---DVYT 201 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~---------~---~~~~ 201 (464)
.|...++.-... ..+..+...+.-++...|+...+..+++.+.... .. + ++.+
T Consensus 117 kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEt 194 (246)
T PF07678_consen 117 KALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVET 194 (246)
T ss_dssp HHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHH
T ss_pred HHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHH
Confidence 344444443222 2244444444445556667777777777775320 00 0 1122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
-.-.+-++.+.++.+.+..+.+-+.++
T Consensus 195 TaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 195 TAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 222333445559999999998888775
Done!