Query 047873
Match_columns 464
No_of_seqs 532 out of 2976
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 06:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.6E-39 1.2E-43 311.4 35.5 424 5-446 82-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-38 1.2E-42 304.6 37.4 348 60-424 201-593 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-30 4E-35 238.0 46.0 381 13-429 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-29 5.9E-34 230.2 44.6 373 65-453 5-379 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.2E-30 4E-35 241.5 24.8 212 182-393 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.2E-30 1.4E-34 237.8 24.6 206 217-428 8-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.8E-26 6.2E-31 218.5 36.5 411 6-449 5-484 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 3.9E-25 1.3E-29 205.6 37.4 379 3-436 22-446 (450)
9 3fp2_A TPR repeat-containing p 100.0 7.7E-25 2.6E-29 208.5 36.2 403 6-447 24-495 (537)
10 2y4t_A DNAJ homolog subfamily 100.0 2.8E-24 9.7E-29 199.8 39.2 367 56-463 22-441 (450)
11 2gw1_A Mitochondrial precursor 99.9 2.5E-23 8.5E-28 196.9 33.1 378 5-416 37-483 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.7E-21 6E-26 175.2 35.8 331 6-392 2-352 (359)
13 3fp2_A TPR repeat-containing p 99.9 1.2E-21 3.9E-26 186.5 32.2 384 60-462 26-477 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 2.1E-20 7.3E-25 168.0 37.2 330 60-428 4-353 (359)
15 2xm6_A Protein corresponding t 99.9 9.3E-19 3.2E-23 164.1 47.3 357 5-410 37-433 (490)
16 2ooe_A Cleavage stimulation fa 99.9 6.8E-19 2.3E-23 166.7 44.8 417 3-445 9-494 (530)
17 3hym_B Cell division cycle pro 99.9 2.7E-20 9.1E-25 165.4 30.6 295 3-355 18-314 (330)
18 3hym_B Cell division cycle pro 99.9 8.2E-20 2.8E-24 162.2 31.8 304 54-397 17-322 (330)
19 2xm6_A Protein corresponding t 99.9 2.1E-17 7.2E-22 154.9 48.9 352 57-440 37-428 (490)
20 1fch_A Peroxisomal targeting s 99.9 7.7E-20 2.6E-24 165.1 24.5 327 72-440 14-355 (368)
21 1fch_A Peroxisomal targeting s 99.9 3.8E-19 1.3E-23 160.5 27.7 314 108-463 15-346 (368)
22 4g1t_A Interferon-induced prot 99.9 3.4E-18 1.1E-22 159.8 34.0 387 5-440 49-455 (472)
23 2ooe_A Cleavage stimulation fa 99.8 1.4E-17 4.6E-22 157.8 37.3 396 56-462 9-478 (530)
24 4eqf_A PEX5-related protein; a 99.8 1.4E-19 4.8E-24 163.2 21.6 265 5-299 63-351 (365)
25 4eqf_A PEX5-related protein; a 99.8 2.9E-19 9.9E-24 161.1 20.4 276 128-440 64-352 (365)
26 3cv0_A Peroxisome targeting si 99.8 1E-18 3.4E-23 155.0 23.6 267 6-301 20-312 (327)
27 3cv0_A Peroxisome targeting si 99.8 8E-18 2.7E-22 149.1 25.3 277 60-370 22-311 (327)
28 1b89_A Protein (clathrin heavy 99.8 1.1E-17 3.7E-22 147.8 24.2 292 7-367 6-304 (449)
29 1xi4_A Clathrin heavy chain; a 99.8 8.8E-16 3E-20 151.4 39.1 377 6-440 984-1380(1630)
30 2pl2_A Hypothetical conserved 99.8 5E-18 1.7E-22 140.5 19.3 201 3-227 1-213 (217)
31 4g1t_A Interferon-induced prot 99.8 3.1E-16 1E-20 146.5 33.2 351 94-462 51-445 (472)
32 1b89_A Protein (clathrin heavy 99.8 4.4E-17 1.5E-21 144.0 25.0 363 6-440 31-413 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 8.6E-17 2.9E-21 139.2 25.7 251 69-339 9-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 1.4E-16 4.7E-21 137.8 25.7 248 139-408 9-263 (291)
35 1xi4_A Clathrin heavy chain; a 99.8 1.1E-14 3.9E-19 143.7 41.7 354 12-442 1054-1443(1630)
36 3e4b_A ALGK; tetratricopeptide 99.8 3.1E-16 1.1E-20 144.7 27.1 381 11-440 7-417 (452)
37 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-18 5.4E-23 165.5 8.8 119 310-428 127-249 (1134)
38 2h6f_A Protein farnesyltransfe 99.7 1.1E-15 3.8E-20 136.6 24.7 255 5-286 95-364 (382)
39 3spa_A Mtrpol, DNA-directed RN 99.7 8.6E-18 2.9E-22 160.5 11.2 150 129-289 127-286 (1134)
40 2pl2_A Hypothetical conserved 99.7 7.4E-16 2.5E-20 127.4 20.2 201 56-268 2-213 (217)
41 2q7f_A YRRB protein; TPR, prot 99.7 5E-16 1.7E-20 131.2 19.2 203 4-229 20-223 (243)
42 2ho1_A Type 4 fimbrial biogene 99.7 2.5E-15 8.4E-20 127.7 23.5 202 7-229 37-239 (252)
43 3u4t_A TPR repeat-containing p 99.7 3.4E-15 1.2E-19 128.4 23.7 199 6-228 2-208 (272)
44 2vq2_A PILW, putative fimbrial 99.7 2.9E-15 1E-19 124.7 22.4 205 3-228 4-211 (225)
45 2h6f_A Protein farnesyltransfe 99.7 7.9E-15 2.7E-19 131.1 26.3 255 55-321 92-364 (382)
46 3uq3_A Heat shock protein STI1 99.7 3.6E-15 1.2E-19 127.1 22.7 236 200-455 6-254 (258)
47 3u4t_A TPR repeat-containing p 99.7 1.3E-14 4.4E-19 124.8 26.0 249 60-316 4-261 (272)
48 3uq3_A Heat shock protein STI1 99.7 5.5E-15 1.9E-19 125.9 23.4 225 60-304 6-236 (258)
49 1ouv_A Conserved hypothetical 99.7 5.6E-14 1.9E-18 120.8 29.6 226 4-270 3-252 (273)
50 4e6h_A MRNA 3'-END-processing 99.7 1E-12 3.4E-17 125.4 39.7 427 4-457 63-584 (679)
51 3e4b_A ALGK; tetratricopeptide 99.7 1.7E-14 5.9E-19 133.1 26.4 345 64-440 8-383 (452)
52 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-15 6E-20 130.4 16.4 190 17-227 15-205 (275)
53 1ouv_A Conserved hypothetical 99.7 2.5E-13 8.5E-18 116.8 29.7 226 60-305 7-252 (273)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.4E-15 8.3E-20 129.5 15.5 224 69-304 15-244 (275)
55 2vq2_A PILW, putative fimbrial 99.6 1.3E-13 4.5E-18 114.7 24.5 205 56-269 4-211 (225)
56 3vtx_A MAMA; tetratricopeptide 99.6 2E-14 6.7E-19 115.7 18.7 167 5-193 3-170 (184)
57 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-14 7.5E-19 121.0 19.6 201 58-269 22-222 (243)
58 2ho1_A Type 4 fimbrial biogene 99.6 1E-13 3.6E-18 117.6 23.5 207 54-270 30-239 (252)
59 4a1s_A PINS, partner of inscut 99.6 1.1E-14 3.7E-19 133.4 15.7 279 6-339 47-372 (411)
60 3sf4_A G-protein-signaling mod 99.6 1.1E-14 3.8E-19 133.0 15.2 305 4-361 6-363 (406)
61 4e6h_A MRNA 3'-END-processing 99.6 3.1E-11 1.1E-15 115.2 37.5 403 56-462 63-556 (679)
62 3vtx_A MAMA; tetratricopeptide 99.6 3E-13 1E-17 108.7 20.2 167 58-228 4-170 (184)
63 2ond_A Cleavage stimulation fa 99.6 4.1E-13 1.4E-17 117.5 22.5 238 4-270 5-271 (308)
64 3ro2_A PINS homolog, G-protein 99.6 3.7E-14 1.3E-18 125.8 15.8 206 6-227 4-251 (338)
65 2ond_A Cleavage stimulation fa 99.6 9.4E-13 3.2E-17 115.2 24.1 204 4-229 47-271 (308)
66 3sf4_A G-protein-signaling mod 99.6 1.1E-13 3.9E-18 126.3 17.9 96 60-156 10-114 (406)
67 4a1s_A PINS, partner of inscut 99.6 2.7E-13 9.2E-18 124.1 20.0 280 97-408 51-371 (411)
68 4gyw_A UDP-N-acetylglucosamine 99.6 1.2E-13 4.1E-18 133.3 18.1 168 3-192 5-173 (723)
69 4abn_A Tetratricopeptide repea 99.5 7.9E-14 2.7E-18 129.5 15.1 192 6-221 101-314 (474)
70 3nf1_A KLC 1, kinesin light ch 99.5 1.7E-13 5.7E-18 120.2 16.6 181 1-192 21-223 (311)
71 3ulq_A Response regulator aspa 99.5 1.5E-12 5.1E-17 117.9 22.4 227 205-440 109-364 (383)
72 3ulq_A Response regulator aspa 99.5 1.5E-12 5.2E-17 117.8 22.3 192 19-227 24-252 (383)
73 3ro2_A PINS homolog, G-protein 99.5 3E-13 1E-17 119.9 17.2 276 61-374 7-332 (338)
74 3nf1_A KLC 1, kinesin light ch 99.5 1.7E-13 5.8E-18 120.2 13.8 169 60-228 28-224 (311)
75 4abn_A Tetratricopeptide repea 99.5 6.9E-13 2.4E-17 123.1 17.4 199 54-264 96-316 (474)
76 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-12 5.2E-17 125.7 19.1 170 54-227 3-173 (723)
77 3as5_A MAMA; tetratricopeptide 99.5 2.1E-12 7.3E-17 103.6 16.7 164 61-228 10-173 (186)
78 3as5_A MAMA; tetratricopeptide 99.4 7.6E-12 2.6E-16 100.4 18.1 153 95-251 9-161 (186)
79 4i17_A Hypothetical protein; T 99.4 1.1E-11 3.9E-16 103.2 19.5 197 4-229 4-210 (228)
80 4i17_A Hypothetical protein; T 99.4 4.2E-11 1.4E-15 99.7 20.0 153 58-214 6-168 (228)
81 3q15_A PSP28, response regulat 99.4 6.7E-11 2.3E-15 106.8 22.8 227 204-440 106-361 (378)
82 3q15_A PSP28, response regulat 99.4 1.2E-10 4.1E-15 105.1 23.5 241 56-303 7-289 (378)
83 1hz4_A MALT regulatory protein 99.4 2E-10 6.8E-15 103.5 24.7 272 61-338 16-321 (373)
84 1hz4_A MALT regulatory protein 99.4 2.4E-10 8.1E-15 103.0 25.0 267 136-408 21-321 (373)
85 3edt_B KLC 2, kinesin light ch 99.4 4.1E-12 1.4E-16 109.6 12.2 165 17-192 11-197 (283)
86 3urz_A Uncharacterized protein 99.3 3.5E-11 1.2E-15 98.5 15.4 165 6-193 3-186 (208)
87 1qqe_A Vesicular transport pro 99.3 1.1E-10 3.9E-15 101.0 19.1 205 8-227 38-268 (292)
88 3edt_B KLC 2, kinesin light ch 99.3 1.4E-11 4.7E-16 106.3 13.1 233 70-303 12-280 (283)
89 4ga2_A E3 SUMO-protein ligase 99.3 8.2E-12 2.8E-16 96.2 10.2 146 12-179 2-149 (150)
90 3qky_A Outer membrane assembly 99.3 6.2E-11 2.1E-15 101.0 16.2 187 4-228 12-224 (261)
91 2pzi_A Probable serine/threoni 99.3 7E-11 2.4E-15 114.7 15.4 180 18-214 402-583 (681)
92 2fo7_A Synthetic consensus TPR 99.3 1.8E-10 6.1E-15 86.8 14.6 131 8-158 2-132 (136)
93 3qou_A Protein YBBN; thioredox 99.2 1.3E-10 4.3E-15 100.3 14.7 163 60-226 118-282 (287)
94 2yhc_A BAMD, UPF0169 lipoprote 99.2 8.6E-10 2.9E-14 91.4 19.1 187 5-229 2-214 (225)
95 2r5s_A Uncharacterized protein 99.2 5.6E-11 1.9E-15 94.4 11.4 163 7-191 6-171 (176)
96 1qqe_A Vesicular transport pro 99.2 9.6E-10 3.3E-14 95.1 19.5 169 277-447 79-273 (292)
97 3urz_A Uncharacterized protein 99.2 4.8E-10 1.7E-14 91.6 16.2 173 61-240 6-196 (208)
98 2uy1_A Cleavage stimulation fa 99.2 1.6E-08 5.4E-13 93.8 27.7 201 216-440 196-409 (493)
99 2pzi_A Probable serine/threoni 99.2 2.2E-10 7.5E-15 111.2 15.7 174 70-249 402-583 (681)
100 3qky_A Outer membrane assembly 99.2 1.4E-09 4.8E-14 92.5 18.8 168 59-247 15-198 (261)
101 3dra_A Protein farnesyltransfe 99.2 1.7E-08 5.9E-13 86.5 25.0 230 11-269 37-287 (306)
102 3mv2_B Coatomer subunit epsilo 99.2 6.8E-09 2.3E-13 88.1 22.0 143 260-407 86-238 (310)
103 3dra_A Protein farnesyltransfe 99.2 2.4E-08 8.4E-13 85.6 25.7 224 70-303 44-286 (306)
104 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.6E-14 82.5 14.8 128 61-191 3-130 (136)
105 2r5s_A Uncharacterized protein 99.2 4.8E-10 1.7E-14 89.0 13.4 164 60-227 7-172 (176)
106 4ga2_A E3 SUMO-protein ligase 99.2 1.9E-10 6.4E-15 88.5 10.6 146 65-214 3-149 (150)
107 3mv2_B Coatomer subunit epsilo 99.2 2.6E-08 8.7E-13 84.6 24.2 243 70-340 24-283 (310)
108 4gco_A Protein STI-1; structur 99.2 3.5E-10 1.2E-14 83.9 11.1 108 7-135 13-121 (126)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 6E-09 2.1E-13 86.3 19.1 172 60-252 5-202 (225)
110 2vsy_A XCC0866; transferase, g 99.1 7.5E-10 2.6E-14 105.6 15.4 153 20-194 2-158 (568)
111 2uy1_A Cleavage stimulation fa 99.1 2.6E-07 8.9E-12 85.7 30.6 357 8-408 16-412 (493)
112 3rjv_A Putative SEL1 repeat pr 99.1 1E-08 3.6E-13 83.9 19.0 165 57-230 16-199 (212)
113 3qou_A Protein YBBN; thioredox 99.1 5E-09 1.7E-13 90.3 17.3 157 91-251 114-272 (287)
114 2lni_A Stress-induced-phosphop 99.1 2.9E-09 1E-13 79.8 13.5 121 2-143 11-132 (133)
115 3rjv_A Putative SEL1 repeat pr 99.1 2.4E-08 8.4E-13 81.6 19.3 184 76-271 3-199 (212)
116 2c2l_A CHIP, carboxy terminus 99.1 5.9E-10 2E-14 95.7 9.7 196 4-228 1-199 (281)
117 3gyz_A Chaperone protein IPGC; 99.0 1.3E-09 4.4E-14 83.4 9.5 103 54-158 30-133 (151)
118 2vsy_A XCC0866; transferase, g 99.0 7E-09 2.4E-13 98.9 16.6 155 72-230 2-159 (568)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.2E-08 7.4E-13 82.1 17.1 129 7-158 6-150 (213)
120 4gco_A Protein STI-1; structur 99.0 5.4E-09 1.9E-13 77.4 12.0 103 54-158 7-110 (126)
121 1a17_A Serine/threonine protei 99.0 7.7E-09 2.6E-13 81.0 13.6 129 7-156 13-144 (166)
122 3gyz_A Chaperone protein IPGC; 99.0 4.4E-09 1.5E-13 80.4 11.1 129 60-200 10-138 (151)
123 2vyi_A SGTA protein; chaperone 99.0 7.2E-09 2.5E-13 77.3 11.9 119 6-145 11-130 (131)
124 2ifu_A Gamma-SNAP; membrane fu 99.0 1.4E-08 4.8E-13 88.5 15.2 170 8-191 37-222 (307)
125 3q7a_A Farnesyltransferase alp 99.0 7.3E-07 2.5E-11 77.3 25.0 185 61-250 56-258 (349)
126 3q7a_A Farnesyltransferase alp 99.0 3.3E-07 1.1E-11 79.4 22.8 233 8-269 55-331 (349)
127 1na0_A Designed protein CTPR3; 98.9 2.1E-08 7.3E-13 74.0 13.3 114 7-140 9-122 (125)
128 3upv_A Heat shock protein STI1 98.9 1E-08 3.5E-13 76.1 11.3 100 5-124 2-102 (126)
129 2vgx_A Chaperone SYCD; alterna 98.9 8.4E-09 2.9E-13 78.9 10.7 103 54-158 15-118 (148)
130 4f3v_A ESX-1 secretion system 98.9 1.2E-08 4.2E-13 85.3 12.1 196 19-240 18-247 (282)
131 2e2e_A Formate-dependent nitri 98.9 6E-09 2E-13 82.7 9.7 120 18-158 21-144 (177)
132 1p5q_A FKBP52, FK506-binding p 98.9 9.8E-09 3.4E-13 90.5 11.9 145 6-156 146-292 (336)
133 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.4E-12 77.4 17.6 127 61-193 8-150 (213)
134 2vgx_A Chaperone SYCD; alterna 98.9 2E-08 7E-13 76.7 11.4 102 4-125 18-120 (148)
135 2xcb_A PCRH, regulatory protei 98.9 1.1E-08 3.7E-13 77.8 9.7 95 60-156 19-113 (142)
136 3u3w_A Transcriptional activat 98.9 3.3E-07 1.1E-11 79.2 19.4 163 65-227 81-265 (293)
137 3gw4_A Uncharacterized protein 98.8 3.3E-08 1.1E-12 80.2 12.3 120 18-156 3-134 (203)
138 3u3w_A Transcriptional activat 98.8 3.7E-06 1.3E-10 72.6 25.8 162 279-440 79-262 (293)
139 4gcn_A Protein STI-1; structur 98.8 3.1E-08 1.1E-12 73.5 10.8 106 6-132 7-119 (127)
140 2ifu_A Gamma-SNAP; membrane fu 98.8 9.6E-08 3.3E-12 83.2 15.6 168 277-446 38-226 (307)
141 1a17_A Serine/threonine protei 98.8 8.6E-08 2.9E-12 74.9 14.0 128 60-190 14-143 (166)
142 2lni_A Stress-induced-phosphop 98.8 1.1E-07 3.8E-12 71.0 14.0 116 60-178 17-132 (133)
143 1elw_A TPR1-domain of HOP; HOP 98.8 8.3E-08 2.8E-12 69.9 12.7 110 6-136 3-113 (118)
144 2kck_A TPR repeat; tetratricop 98.8 3.6E-08 1.2E-12 71.2 10.2 103 4-125 3-108 (112)
145 3sz7_A HSC70 cochaperone (SGT) 98.8 4.8E-08 1.6E-12 76.3 11.5 103 4-126 8-111 (164)
146 2qfc_A PLCR protein; TPR, HTH, 98.8 6.7E-07 2.3E-11 77.2 19.9 165 62-226 78-264 (293)
147 1p5q_A FKBP52, FK506-binding p 98.8 5E-09 1.7E-13 92.4 6.3 97 60-157 148-258 (336)
148 2qfc_A PLCR protein; TPR, HTH, 98.8 4.9E-07 1.7E-11 78.1 18.7 173 7-191 75-264 (293)
149 2dba_A Smooth muscle cell asso 98.8 2E-07 6.9E-12 71.1 14.5 109 4-133 25-137 (148)
150 2vyi_A SGTA protein; chaperone 98.8 8.6E-08 2.9E-12 71.3 12.1 118 60-180 13-130 (131)
151 2xcb_A PCRH, regulatory protei 98.8 4.6E-08 1.6E-12 74.3 10.6 110 81-193 6-115 (142)
152 1na0_A Designed protein CTPR3; 98.8 2E-07 6.9E-12 68.6 13.5 112 60-174 10-121 (125)
153 2e2e_A Formate-dependent nitri 98.8 3.7E-08 1.3E-12 78.0 9.9 121 70-193 21-144 (177)
154 2c2l_A CHIP, carboxy terminus 98.7 4E-08 1.4E-12 84.3 9.7 195 59-269 4-199 (281)
155 2fbn_A 70 kDa peptidylprolyl i 98.7 1.9E-07 6.6E-12 75.4 13.0 144 6-155 37-183 (198)
156 3q49_B STIP1 homology and U bo 98.7 1.7E-07 5.8E-12 70.5 11.5 100 4-123 6-106 (137)
157 3gw4_A Uncharacterized protein 98.7 1.8E-07 6.3E-12 75.8 12.3 62 276-337 27-93 (203)
158 2fbn_A 70 kDa peptidylprolyl i 98.7 1.9E-08 6.4E-13 81.4 5.8 96 60-157 39-150 (198)
159 1elr_A TPR2A-domain of HOP; HO 98.7 9E-08 3.1E-12 71.2 9.2 112 6-137 3-120 (131)
160 4f3v_A ESX-1 secretion system 98.7 1.3E-07 4.6E-12 79.1 10.8 200 68-280 16-246 (282)
161 1hxi_A PEX5, peroxisome target 98.7 7.7E-08 2.6E-12 70.6 8.4 91 65-157 23-113 (121)
162 3upv_A Heat shock protein STI1 98.7 4.5E-07 1.5E-11 67.1 12.6 97 60-158 5-101 (126)
163 3dss_A Geranylgeranyl transfer 98.7 8.1E-06 2.8E-10 70.5 21.7 187 19-228 41-267 (331)
164 2xev_A YBGF; tetratricopeptide 98.6 5.8E-07 2E-11 66.7 12.2 96 9-124 4-106 (129)
165 1elw_A TPR1-domain of HOP; HOP 98.6 1E-06 3.4E-11 64.0 13.1 97 60-158 5-101 (118)
166 1wao_1 Serine/threonine protei 98.6 1.7E-08 6E-13 93.4 3.9 127 6-153 5-134 (477)
167 4gcn_A Protein STI-1; structur 98.6 4.3E-07 1.5E-11 67.2 10.8 98 60-158 9-112 (127)
168 3rkv_A Putative peptidylprolyl 98.6 2.4E-07 8.3E-12 72.1 9.8 109 6-125 10-128 (162)
169 3dss_A Geranylgeranyl transfer 98.6 4.5E-05 1.5E-09 65.8 24.4 196 69-269 39-267 (331)
170 3sz7_A HSC70 cochaperone (SGT) 98.6 1E-06 3.5E-11 68.6 13.1 97 60-158 12-108 (164)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2.3E-07 7.9E-12 85.5 10.7 137 6-149 267-405 (457)
172 1hxi_A PEX5, peroxisome target 98.6 4.2E-07 1.5E-11 66.6 9.9 97 95-193 18-114 (121)
173 1ihg_A Cyclophilin 40; ppiase 98.6 5E-07 1.7E-11 80.6 12.0 133 7-150 223-362 (370)
174 2kck_A TPR repeat; tetratricop 98.6 1E-06 3.5E-11 63.3 11.4 98 60-158 7-106 (112)
175 3k9i_A BH0479 protein; putativ 98.5 2.4E-07 8.2E-12 67.5 7.5 87 19-125 2-92 (117)
176 3q49_B STIP1 homology and U bo 98.5 1.8E-06 6.3E-11 64.7 12.5 99 58-158 8-106 (137)
177 4b4t_Q 26S proteasome regulato 98.5 2.7E-06 9.4E-11 78.0 16.1 214 13-227 10-244 (434)
178 1elr_A TPR2A-domain of HOP; HO 98.5 5.1E-07 1.8E-11 67.0 9.1 98 60-158 5-108 (131)
179 2if4_A ATFKBP42; FKBP-like, al 98.5 2.3E-07 7.8E-12 81.8 8.0 149 6-192 178-327 (338)
180 2dba_A Smooth muscle cell asso 98.5 3E-06 1E-10 64.4 13.3 96 60-158 29-128 (148)
181 2hr2_A Hypothetical protein; a 98.5 7.1E-07 2.4E-11 67.4 9.2 109 7-123 11-131 (159)
182 3ro3_A PINS homolog, G-protein 98.5 2E-06 7E-11 66.4 12.0 137 7-156 9-156 (164)
183 2xev_A YBGF; tetratricopeptide 98.4 5.1E-06 1.8E-10 61.4 13.2 95 62-158 5-105 (129)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.4E-07 4.9E-12 86.9 5.3 97 60-157 269-379 (457)
185 1dce_A Protein (RAB geranylger 98.3 1.4E-05 4.9E-10 75.3 16.2 173 19-214 40-241 (567)
186 3k9i_A BH0479 protein; putativ 98.3 1.3E-06 4.4E-11 63.5 7.0 87 71-158 2-90 (117)
187 3ro3_A PINS homolog, G-protein 98.3 4.8E-06 1.6E-10 64.3 10.7 132 276-407 10-156 (164)
188 1wao_1 Serine/threonine protei 98.3 1.8E-06 6.3E-11 79.8 9.4 125 61-188 8-134 (477)
189 4b4t_Q 26S proteasome regulato 98.3 6.3E-05 2.2E-09 68.8 18.8 186 255-440 19-241 (434)
190 3rkv_A Putative peptidylprolyl 98.3 7.7E-06 2.6E-10 63.4 10.8 98 60-158 12-126 (162)
191 1ihg_A Cyclophilin 40; ppiase 98.3 6.4E-06 2.2E-10 73.4 11.4 98 60-158 224-336 (370)
192 2l6j_A TPR repeat-containing p 98.2 3.5E-06 1.2E-10 60.4 7.5 91 5-115 2-99 (111)
193 1na3_A Designed protein CTPR2; 98.2 7.2E-06 2.5E-10 56.2 8.1 79 6-104 8-87 (91)
194 1dce_A Protein (RAB geranylger 98.2 0.0001 3.5E-09 69.5 18.1 176 70-250 39-242 (567)
195 2hr2_A Hypothetical protein; a 98.2 1.7E-05 5.9E-10 59.8 10.3 97 60-157 12-130 (159)
196 2if4_A ATFKBP42; FKBP-like, al 98.1 7.4E-06 2.5E-10 72.1 9.0 148 60-228 180-328 (338)
197 3n71_A Histone lysine methyltr 98.1 6.6E-06 2.3E-10 75.7 8.5 131 16-157 318-463 (490)
198 2kat_A Uncharacterized protein 98.1 1.1E-05 3.6E-10 58.4 7.5 69 54-123 13-82 (115)
199 2l6j_A TPR repeat-containing p 98.1 3E-06 1E-10 60.8 4.3 93 60-154 5-103 (111)
200 3ma5_A Tetratricopeptide repea 98.0 1.7E-05 5.7E-10 55.6 7.6 66 4-88 4-70 (100)
201 1klx_A Cysteine rich protein B 98.0 0.00011 3.8E-09 54.9 12.2 109 74-193 10-126 (138)
202 3n71_A Histone lysine methyltr 98.0 3.3E-05 1.1E-09 71.0 11.0 125 284-408 318-463 (490)
203 1na3_A Designed protein CTPR2; 98.0 5.2E-05 1.8E-09 51.7 9.6 80 60-141 10-89 (91)
204 1klx_A Cysteine rich protein B 98.0 0.00045 1.5E-08 51.5 14.6 110 290-410 10-127 (138)
205 1zu2_A Mitochondrial import re 97.9 1.6E-05 5.3E-10 59.9 5.3 87 18-124 13-121 (158)
206 1zu2_A Mitochondrial import re 97.9 2.9E-05 1E-09 58.4 6.7 98 70-171 13-131 (158)
207 2kat_A Uncharacterized protein 97.9 0.0001 3.4E-09 53.1 9.2 79 77-157 3-81 (115)
208 3ma5_A Tetratricopeptide repea 97.8 6.1E-05 2.1E-09 52.7 7.0 65 58-123 6-70 (100)
209 3bee_A Putative YFRE protein; 97.6 0.00055 1.9E-08 46.7 9.5 68 3-89 2-73 (93)
210 3ly7_A Transcriptional activat 97.6 0.00043 1.5E-08 60.0 10.5 72 128-203 276-347 (372)
211 2kc7_A BFR218_protein; tetratr 97.5 5.2E-05 1.8E-09 52.9 3.4 58 13-89 6-65 (99)
212 3lvg_A Clathrin heavy chain 1; 97.5 1E-07 3.4E-12 83.9 -13.2 90 348-440 368-479 (624)
213 4h7y_A Dual specificity protei 97.4 0.0024 8E-08 46.8 10.8 104 4-126 10-126 (161)
214 3ly7_A Transcriptional activat 97.4 0.0015 5E-08 56.7 11.7 144 271-419 190-347 (372)
215 3qww_A SET and MYND domain-con 97.4 0.00027 9.3E-09 63.9 7.3 93 19-122 310-410 (433)
216 3qww_A SET and MYND domain-con 97.4 0.00032 1.1E-08 63.4 7.2 76 1-87 334-410 (433)
217 3qwp_A SET and MYND domain-con 97.3 0.0017 5.7E-08 58.8 10.6 99 13-122 293-399 (429)
218 2kc7_A BFR218_protein; tetratr 97.2 0.0029 9.8E-08 43.7 9.1 66 65-132 6-72 (99)
219 3bee_A Putative YFRE protein; 97.1 0.0036 1.2E-07 42.6 8.5 67 58-125 5-74 (93)
220 3qwp_A SET and MYND domain-con 97.0 0.00096 3.3E-08 60.4 6.6 76 1-87 323-399 (429)
221 2v5f_A Prolyl 4-hydroxylase su 96.9 0.014 4.9E-07 40.7 10.8 74 4-89 2-76 (104)
222 1wy6_A Hypothetical protein ST 96.8 0.02 6.7E-07 41.0 10.0 138 17-160 17-156 (172)
223 3lvg_A Clathrin heavy chain 1; 96.8 0.00022 7.6E-09 63.3 0.3 384 6-439 53-520 (624)
224 1pc2_A Mitochondria fission pr 96.8 0.0082 2.8E-07 44.6 8.5 87 325-415 13-104 (152)
225 3u64_A Protein TP_0956; tetrat 96.6 0.033 1.1E-06 46.4 11.9 107 234-342 154-272 (301)
226 3mkq_B Coatomer subunit alpha; 96.5 0.1 3.5E-06 39.9 13.2 131 284-444 14-144 (177)
227 3mkq_A Coatomer beta'-subunit; 96.5 0.089 3E-06 52.3 16.8 131 63-226 633-763 (814)
228 2v5f_A Prolyl 4-hydroxylase su 96.5 0.024 8.4E-07 39.4 9.0 64 62-125 8-77 (104)
229 3u64_A Protein TP_0956; tetrat 96.4 0.029 9.8E-07 46.7 10.0 83 54-136 191-284 (301)
230 3mkq_A Coatomer beta'-subunit; 96.3 0.14 4.7E-06 50.9 16.7 105 66-191 659-763 (814)
231 1pc2_A Mitochondria fission pr 96.3 0.03 1E-06 41.6 8.7 83 75-158 14-100 (152)
232 4h7y_A Dual specificity protei 96.2 0.1 3.4E-06 38.4 10.7 97 60-158 14-123 (161)
233 3mkq_B Coatomer subunit alpha; 95.9 0.34 1.2E-05 37.0 13.3 44 70-119 16-59 (177)
234 1nzn_A CGI-135 protein, fissio 95.3 0.07 2.4E-06 38.1 7.0 80 327-408 18-102 (126)
235 4ady_A RPN2, 26S proteasome re 95.2 2.8 9.6E-05 41.5 32.1 266 173-448 383-662 (963)
236 1nzn_A CGI-135 protein, fissio 95.1 0.08 2.7E-06 37.8 6.8 84 74-158 16-103 (126)
237 2ff4_A Probable regulatory pro 94.6 0.61 2.1E-05 41.4 13.1 117 6-131 111-247 (388)
238 1wy6_A Hypothetical protein ST 94.1 1.1 3.8E-05 32.3 15.3 66 345-411 91-156 (172)
239 3ffl_A Anaphase-promoting comp 93.8 0.28 9.4E-06 36.9 7.4 79 9-87 65-150 (167)
240 4gns_B Protein CSD3, chitin bi 93.7 0.58 2E-05 45.2 11.3 50 390-440 347-396 (754)
241 4fhn_B Nucleoporin NUP120; pro 93.6 1.5 5.1E-05 45.3 15.2 139 4-144 839-986 (1139)
242 2ff4_A Probable regulatory pro 93.2 0.56 1.9E-05 41.7 10.0 70 9-96 173-247 (388)
243 4b4t_P 26S proteasome regulato 93.2 4.8 0.00016 36.4 17.3 94 133-226 141-245 (445)
244 4b4t_P 26S proteasome regulato 93.1 5 0.00017 36.4 18.8 165 167-337 140-322 (445)
245 4gns_B Protein CSD3, chitin bi 93.1 0.7 2.4E-05 44.7 10.9 128 203-336 252-397 (754)
246 3ffl_A Anaphase-promoting comp 93.0 0.69 2.3E-05 34.7 8.4 63 60-122 21-91 (167)
247 3o48_A Mitochondria fission 1 92.8 1.6 5.4E-05 31.3 9.8 69 378-446 38-110 (134)
248 1v54_E Cytochrome C oxidase po 92.7 1.5 5.2E-05 29.5 9.0 50 325-374 25-74 (109)
249 4fhn_B Nucleoporin NUP120; pro 91.8 4.9 0.00017 41.6 16.1 144 99-250 817-987 (1139)
250 1v54_E Cytochrome C oxidase po 91.7 1.6 5.6E-05 29.4 8.0 62 360-422 25-86 (109)
251 2wpv_A GET4, UPF0363 protein Y 91.4 6.1 0.00021 33.6 17.2 19 16-34 22-40 (312)
252 1y8m_A FIS1; mitochondria, unk 90.9 3.6 0.00012 30.0 11.0 67 342-408 36-105 (144)
253 2y69_E Cytochrome C oxidase su 90.4 3.2 0.00011 29.7 9.0 50 325-374 68-117 (152)
254 1qsa_A Protein (soluble lytic 90.4 12 0.00042 35.4 27.6 257 95-373 73-347 (618)
255 4ady_A RPN2, 26S proteasome re 90.0 17 0.00057 36.3 26.1 354 61-431 341-722 (963)
256 3lpz_A GET4 (YOR164C homolog); 89.6 9.2 0.00031 32.7 19.1 18 17-34 22-42 (336)
257 3o48_A Mitochondria fission 1 88.2 5.6 0.00019 28.6 9.9 69 271-339 36-107 (134)
258 4b4t_R RPN7, 26S proteasome re 87.8 4.2 0.00015 36.6 10.6 98 60-157 132-236 (429)
259 1zbp_A Hypothetical protein VP 86.3 3.4 0.00011 34.0 8.0 55 103-158 6-60 (273)
260 3txn_A 26S proteasome regulato 86.2 17 0.00059 32.0 21.2 164 280-447 104-289 (394)
261 1zbp_A Hypothetical protein VP 85.8 2.1 7.2E-05 35.1 6.6 56 68-124 6-61 (273)
262 3lpz_A GET4 (YOR164C homolog); 84.9 18 0.00061 31.0 19.0 23 61-83 37-59 (336)
263 2wpv_A GET4, UPF0363 protein Y 84.5 18 0.00061 30.7 18.2 24 164-187 134-157 (312)
264 4b4t_R RPN7, 26S proteasome re 84.2 11 0.00036 34.0 11.3 63 165-227 132-196 (429)
265 1y8m_A FIS1; mitochondria, unk 82.5 12 0.00041 27.3 12.4 68 272-339 36-106 (144)
266 2y69_E Cytochrome C oxidase su 79.5 15 0.00051 26.4 10.3 61 257-318 70-130 (152)
267 2p58_C Putative type III secre 77.8 13 0.00046 25.0 7.1 76 358-442 20-96 (116)
268 3esl_A Checkpoint serine/threo 76.5 25 0.00086 27.4 9.5 53 326-378 95-148 (202)
269 2uwj_G Type III export protein 75.0 13 0.00045 25.0 6.3 9 142-150 52-60 (115)
270 3esl_A Checkpoint serine/threo 70.4 36 0.0012 26.5 10.0 57 288-344 92-149 (202)
271 1qsa_A Protein (soluble lytic 69.5 78 0.0027 30.0 36.3 140 258-403 270-436 (618)
272 4b4t_S RPN3, 26S proteasome re 68.7 32 0.0011 31.5 9.6 67 7-89 231-300 (523)
273 3pvs_A Replication-associated 67.3 72 0.0025 28.8 12.7 38 212-249 268-305 (447)
274 2uwj_G Type III export protein 66.5 27 0.00091 23.5 7.7 80 142-229 19-98 (115)
275 2p58_C Putative type III secre 65.5 28 0.00097 23.5 8.6 77 144-228 22-98 (116)
276 1wdy_A 2-5A-dependent ribonucl 64.1 6.7 0.00023 32.5 4.3 56 169-232 7-65 (285)
277 2d2s_A Exocyst complex compone 60.6 46 0.0016 26.8 8.3 89 65-156 24-118 (235)
278 3bge_A Predicted ATPase; struc 60.6 57 0.0019 25.3 8.5 41 211-251 19-59 (201)
279 2r9g_A AAA ATPase, central reg 60.2 58 0.002 25.3 9.0 61 211-273 26-86 (204)
280 4a1g_A Mitotic checkpoint seri 59.9 50 0.0017 24.4 9.4 50 364-413 84-134 (152)
281 3ltm_A Alpha-REP4; protein eng 58.9 61 0.0021 25.1 20.0 171 56-246 30-200 (211)
282 3eiq_C Programmed cell death p 58.3 93 0.0032 27.0 10.6 77 313-390 220-298 (358)
283 4gq2_M Nucleoporin NUP120; bet 58.1 66 0.0023 32.5 10.7 32 3-34 836-867 (950)
284 3mv2_A Coatomer subunit alpha; 58.1 86 0.003 26.6 17.6 40 13-52 34-73 (325)
285 2d2s_A Exocyst complex compone 57.4 67 0.0023 25.9 8.7 90 315-407 23-118 (235)
286 2ko4_A Mediator of RNA polymer 55.8 11 0.00037 23.9 2.8 34 1-34 30-63 (81)
287 1wdy_A 2-5A-dependent ribonucl 55.8 82 0.0028 25.6 10.5 18 66-83 9-26 (285)
288 3ctd_A Putative ATPase, AAA fa 55.5 73 0.0025 25.0 8.8 62 211-273 47-108 (213)
289 2fe3_A Peroxide operon regulat 52.8 64 0.0022 23.5 7.6 60 85-145 13-72 (145)
290 3ltm_A Alpha-REP4; protein eng 52.6 79 0.0027 24.5 20.3 17 198-214 94-110 (211)
291 2zu6_B Programmed cell death p 52.3 1.1E+02 0.0037 25.9 10.6 25 132-156 6-30 (307)
292 4gq2_M Nucleoporin NUP120; bet 51.9 1.5E+02 0.0053 29.9 12.2 49 130-178 898-950 (950)
293 1mzb_A Ferric uptake regulatio 51.5 64 0.0022 23.1 7.2 60 85-145 9-69 (136)
294 4a1g_A Mitotic checkpoint seri 51.1 72 0.0024 23.6 9.0 50 294-343 84-134 (152)
295 4ets_A Ferric uptake regulatio 50.7 44 0.0015 25.0 6.3 71 75-146 13-86 (162)
296 3kae_A CDC27, possible protein 49.9 82 0.0028 23.9 7.3 78 322-405 45-139 (242)
297 4ets_A Ferric uptake regulatio 49.8 58 0.002 24.4 6.8 73 23-112 13-87 (162)
298 2wvi_A Mitotic checkpoint seri 49.6 80 0.0027 23.7 9.3 50 364-413 79-129 (164)
299 3txn_A 26S proteasome regulato 48.8 1.4E+02 0.0048 26.3 29.0 166 60-226 20-208 (394)
300 2w57_A Ferric uptake regulatio 47.5 71 0.0024 23.4 6.9 61 85-146 8-69 (150)
301 1bpo_A Protein (clathrin); cla 47.3 1.6E+02 0.0056 26.6 12.3 33 54-86 356-388 (494)
302 3jxi_A Vanilloid receptor-rela 46.8 22 0.00074 28.9 4.5 19 285-303 232-250 (260)
303 2nsz_A Programmed cell death p 46.6 76 0.0026 22.6 6.7 25 313-337 10-34 (129)
304 3eyy_A Putative iron uptake re 46.3 59 0.002 23.7 6.3 59 85-145 10-68 (145)
305 2b7e_A PRE-mRNA processing pro 45.3 47 0.0016 19.8 4.7 50 216-265 3-54 (59)
306 1ug3_A EIF4GI, eukaryotic prot 45.2 1.5E+02 0.005 25.5 10.1 24 133-156 15-38 (339)
307 3kae_A CDC27, possible protein 44.9 65 0.0022 24.4 6.0 68 16-84 71-139 (242)
308 1bpo_A Protein (clathrin); cla 44.0 1.3E+02 0.0043 27.2 8.7 113 72-189 342-454 (494)
309 2f6m_A Suppressor protein STP2 43.0 23 0.0008 21.6 2.9 50 61-111 4-53 (65)
310 3ltj_A Alpharep-4; protein eng 42.4 1.1E+02 0.0038 23.3 20.7 17 198-214 89-105 (201)
311 2wvi_A Mitotic checkpoint seri 41.8 1.1E+02 0.0037 23.0 9.4 50 294-343 79-129 (164)
312 3eyy_A Putative iron uptake re 41.2 92 0.0031 22.7 6.6 61 188-250 8-68 (145)
313 2keb_A DNA polymerase subunit 40.9 79 0.0027 21.1 5.6 31 399-429 28-58 (101)
314 4g8k_A 2-5A-dependent ribonucl 40.9 1.6E+02 0.0053 24.9 9.3 291 133-450 26-336 (337)
315 2ijq_A Hypothetical protein; s 39.7 1.2E+02 0.004 22.7 8.1 50 324-373 46-103 (161)
316 1ya0_A SMG-7 transcript varian 39.1 1.6E+02 0.0055 27.0 9.1 74 65-140 158-231 (497)
317 2fe3_A Peroxide operon regulat 38.8 1.1E+02 0.0038 22.2 8.1 62 188-250 11-72 (145)
318 4aez_C MAD3, mitotic spindle c 38.7 95 0.0032 24.7 6.6 51 363-413 132-183 (223)
319 2xig_A Ferric uptake regulatio 38.7 1.1E+02 0.0039 22.3 7.8 61 85-146 18-78 (150)
320 4b4t_S RPN3, 26S proteasome re 38.5 2.4E+02 0.0081 26.0 13.2 66 60-125 232-301 (523)
321 2nsz_A Programmed cell death p 38.3 1.1E+02 0.0036 21.8 7.3 64 278-342 10-75 (129)
322 1mzb_A Ferric uptake regulatio 37.9 1.1E+02 0.0037 21.9 7.1 60 190-250 9-69 (136)
323 2w57_A Ferric uptake regulatio 37.7 1.2E+02 0.004 22.2 7.2 61 189-250 7-68 (150)
324 3pvs_A Replication-associated 37.7 2.3E+02 0.0078 25.5 12.6 55 176-230 267-326 (447)
325 2ion_A PDCD4, programmed cell 37.6 93 0.0032 22.9 6.1 63 278-341 12-76 (152)
326 2ion_A PDCD4, programmed cell 37.5 72 0.0025 23.5 5.5 65 312-377 11-77 (152)
327 3bqo_A Telomeric repeat-bindin 36.7 1.2E+02 0.004 23.6 6.4 39 13-51 123-162 (211)
328 2xig_A Ferric uptake regulatio 36.5 1.2E+02 0.0042 22.1 8.0 63 188-251 16-78 (150)
329 3eiq_C Programmed cell death p 35.1 2.2E+02 0.0076 24.6 13.4 79 348-427 220-300 (358)
330 2o03_A Probable zinc uptake re 34.1 92 0.0031 22.1 5.6 47 99-145 15-61 (131)
331 3bu8_A Telomeric repeat-bindin 34.0 1.7E+02 0.0059 23.0 9.3 25 64-88 119-143 (235)
332 3mwm_A ZUR, putative metal upt 33.8 85 0.0029 22.6 5.4 48 98-145 17-64 (139)
333 3e3v_A Regulatory protein RECX 33.3 1.6E+02 0.0054 22.4 8.9 29 418-446 139-168 (177)
334 3bqo_A Telomeric repeat-bindin 32.9 91 0.0031 24.2 5.3 52 98-150 121-172 (211)
335 2crb_A Nuclear receptor bindin 32.7 67 0.0023 21.2 3.9 26 9-34 17-42 (97)
336 3l6a_A Eukaryotic translation 32.1 2.5E+02 0.0086 24.4 11.5 62 166-231 14-80 (364)
337 2ijq_A Hypothetical protein; s 32.0 1.6E+02 0.0054 22.0 7.8 51 390-440 42-100 (161)
338 1ug3_A EIF4GI, eukaryotic prot 31.2 1.3E+02 0.0045 25.8 7.0 63 278-341 14-77 (339)
339 3ph0_C ASCG; type III secretio 29.9 87 0.003 18.4 4.1 14 66-79 47-60 (61)
340 2cos_A Serine/threonine protei 29.4 53 0.0018 19.0 2.7 36 403-443 13-50 (54)
341 2o03_A Probable zinc uptake re 28.9 1.2E+02 0.004 21.5 5.4 47 204-250 15-61 (131)
342 1oai_A Nuclear RNA export fact 28.8 61 0.0021 19.3 3.1 19 71-89 32-50 (59)
343 3mwm_A ZUR, putative metal upt 27.5 1.1E+02 0.0037 22.0 5.0 48 203-250 17-64 (139)
344 4aez_C MAD3, mitotic spindle c 27.4 2.3E+02 0.008 22.5 8.5 49 111-159 131-180 (223)
345 3mkr_B Coatomer subunit alpha; 27.2 2.9E+02 0.0098 23.5 17.3 40 13-52 22-61 (320)
346 3ax2_A Mitochondrial import re 26.6 1.2E+02 0.0042 19.0 6.4 21 66-86 24-44 (73)
347 2rpa_A Katanin P60 ATPase-cont 26.5 97 0.0033 19.7 3.9 25 11-35 16-40 (78)
348 2fu4_A Ferric uptake regulatio 26.2 1.3E+02 0.0043 19.0 7.0 61 189-250 7-68 (83)
349 1oyz_A Hypothetical protein YI 26.1 2.6E+02 0.009 22.6 22.8 111 308-431 140-251 (280)
350 1n11_A Ankyrin; clathrin, BAND 24.6 2.7E+02 0.0092 24.5 8.3 306 114-446 27-338 (437)
351 3ljn_A Hypothetical protein; a 24.5 1.8E+02 0.0061 24.9 6.9 81 68-157 26-109 (364)
352 1oyz_A Hypothetical protein YI 24.0 2.9E+02 0.0099 22.4 21.7 18 197-214 140-157 (280)
353 3eu9_A Huntingtin-interacting 23.9 2.5E+02 0.0087 21.7 9.1 79 66-152 46-129 (240)
354 3kea_A K1L; tropism, ANK repea 23.8 3E+02 0.01 22.5 10.1 17 284-300 167-183 (285)
355 3bu8_A Telomeric repeat-bindin 22.9 2.8E+02 0.0097 21.9 12.8 21 318-338 122-142 (235)
356 1wgl_A TOLL-interacting protei 22.6 1.3E+02 0.0044 17.9 3.8 19 71-89 35-53 (59)
357 1ya0_A SMG-7 transcript varian 22.2 4.5E+02 0.016 24.0 9.2 76 99-176 157-232 (497)
358 1om2_A Protein (mitochondrial 22.0 1.8E+02 0.0062 19.3 5.6 13 72-84 50-62 (95)
359 3ltj_A Alpharep-4; protein eng 20.9 2.8E+02 0.0094 21.0 22.3 170 57-246 26-195 (201)
360 3mv2_A Coatomer subunit alpha; 20.5 4E+02 0.014 22.7 14.5 20 16-35 123-142 (325)
361 2p22_A Suppressor protein STP2 20.4 78 0.0027 24.0 3.0 45 61-106 113-157 (174)
362 2r9g_A AAA ATPase, central reg 20.2 3.1E+02 0.011 21.3 10.9 83 286-369 25-112 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-39 Score=311.39 Aligned_cols=424 Identities=11% Similarity=0.017 Sum_probs=265.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCC-----------------ChHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG-----------------SSASLFASILETRGTHLPGLVLDALMI 67 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 67 (464)
+++..|+.++..|.+.|++++|+.+|++++...... .+...+..+ ...+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE---DLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT---CGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH---hccccchhHHHHHHH
Confidence 578899999999999999999999999998432110 011111111 112334455555555
Q ss_pred HHHhcCChhHHHHHHHHHHhC---------------CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 68 VYVDLGFLDDAIQCFRLLRKH---------------YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
+|.+.|++++|+++|+++... +.+.+..+|..++.++.+.|++++|.+.|+++.+.++. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 555555555555555532111 11122445555555555556666666555555554432 33333
Q ss_pred HHH--------------------------------------HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 133 NVL--------------------------------------MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 133 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..+ +..|.+.|++++|.++|+++.+. +++..+++.++..|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 222 22233445555555555555443 35666666777777
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (464)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~---- 389 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI---- 389 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH----
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH----
Confidence 77777777777777766543 2355566667777777777777777777766543 33566677777777776655
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047873 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334 (464)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (464)
++|.++|+++.... +.+..+|..++.+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|..+|+
T Consensus 390 --~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 390 --SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp --HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 47777777776542 234567777777777777777777777777765432 56677777777777777777777777
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPA--VETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776654 345667777777777777777777777777664 44555 56777777777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 409 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
.+ +.+..+|..+..+|.+.|++++|.+.+++ +.+.|+
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 43 33667777777777777777777777776 455665
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-38 Score=304.59 Aligned_cols=348 Identities=10% Similarity=0.011 Sum_probs=209.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHH--------------------------------------H
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL--------------------------------------I 101 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~ 101 (464)
.+|+.++.+|.+.|++++|+++|+++.+.+ +.+...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 566666666666666666666666666554 2233333322 2
Q ss_pred HHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh
Q 047873 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181 (464)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (464)
..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH
Confidence 2233456666666666666554 2466666666666666666666666666666543 335566666666666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHH
Q 047873 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261 (464)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ 261 (464)
+|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++ ++|++
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~------~~A~~ 428 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEH------DQAIS 428 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH------HHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------HHHHH
Confidence 6666666665432 3355666666666666666666666666666542 22455666666666666554 46666
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC--
Q 047873 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-- 339 (464)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 339 (464)
+|+++...+ +.+..++..++.+|.+.|++++|.++|+++.+.... +..+|..++..|.+.|++++|..+|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 666666543 234556666666666666666666666666665433 5566666666666666666666666666554
Q ss_pred --CCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C
Q 047873 340 --GLKPD--DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-D 414 (464)
Q Consensus 340 --~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~ 414 (464)
+..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+. .| +
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~ 583 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNE 583 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCC
Confidence 33454 4566666666666666666666666666542 235666666666666666666666666666653 23 3
Q ss_pred HHHHHHHHHH
Q 047873 415 DITYNILLEG 424 (464)
Q Consensus 415 ~~~~~~l~~~ 424 (464)
...+..+..+
T Consensus 584 ~~~~~~l~~~ 593 (597)
T 2xpi_A 584 IMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHHHH
Confidence 4444444433
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-30 Score=237.95 Aligned_cols=381 Identities=13% Similarity=0.019 Sum_probs=317.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
+...+.+.|++++|++.|++++. ..|+. ..+..+...+.+.|++++|...++...... |
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~-------------------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR-------------------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-P 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 45677889999999999999883 34555 788888889999999999999999988875 5
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
.+..++..++..+.+.|++++|+..|+++++..+. +..++..+..++...|++++|.+.|+++.+.+ +.+...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 67788999999999999999999999999987654 67788999999999999999999999988764 33455677788
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
..+...|++++|.+.|+++.+.. +.+..+|..+..++...|++++|...|+++.+.++ .+...+..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHH
Confidence 88889999999999999988763 34578889999999999999999999999988753 25777888888888888874
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
+|...+++.....+ .+..++..+..++...|++++|...++++.+.++. +..++..+...+.+.|++++|..
T Consensus 221 ------~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 221 ------RAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp ------HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ------HHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999988877532 35678888899999999999999999999887544 67788889999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 411 (464)
.++++.+.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...|.+.|++++|...++++.+.
T Consensus 293 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-- 368 (388)
T 1w3b_A 293 CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-- 368 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 999998864 567788889999999999999999999998875 3346778889999999999999999999998864
Q ss_pred CC-CHHHHHHHHHHHHhcC
Q 047873 412 VP-DDITYNILLEGHCKHG 429 (464)
Q Consensus 412 ~p-~~~~~~~l~~~~~~~g 429 (464)
.| +...|..+...+...|
T Consensus 369 ~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHhHHHHHHHcc
Confidence 44 5667777777666655
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-29 Score=230.23 Aligned_cols=373 Identities=12% Similarity=0.014 Sum_probs=323.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
++..+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++..++..+. +..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 4566788999999999999998875 456677888888999999999999999999987654 88899999999999999
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
+++|...|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998763 3355679999999999999999999999998764 33456778888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
+.+..+ .+..+|..+...+...|++ ++|...|+++....+ .+...+..+..++...|++++|...+++....
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEI------WLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCH------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 988743 3678899999999998876 699999999988643 35678899999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 047873 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384 (464)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (464)
.+. +..++..+...+.+.|++++|...++++.+.+ +.+..++..+...+.+.|++++|...|+++.+. .+.+..++.
T Consensus 233 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 309 (388)
T 1w3b_A 233 SPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHH
Confidence 544 67899999999999999999999999999875 346788999999999999999999999999986 345788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHh
Q 047873 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-YACYTSL 453 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~l 453 (464)
.+...+.+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|.+.+++ ..+.|+ ...|..+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 9999999999999999999999875 244688999999999999999999999998 677886 3444443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1.2e-30 Score=241.48 Aligned_cols=212 Identities=15% Similarity=0.186 Sum_probs=183.2
Q ss_pred HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc---ccCHH
Q 047873 182 EGFRLKSVMEGSGMRPDV-YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM---AGDMK 257 (464)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~ 257 (464)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|+..+.... .+.++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666555443 35788899999999999999999999999999999999999999988776543 34578
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|..+|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 047873 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (464)
+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.2e-30 Score=237.76 Aligned_cols=206 Identities=20% Similarity=0.261 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCC-----
Q 047873 217 DAELLLHEMCERGLTPND-VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD----- 290 (464)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 290 (464)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|+. ++|+++|++|...|+.||..+|+.+|.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~------~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDV------LEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh
Confidence 455666777766655443 4588899999998876 6999999999999999999999999999987665
Q ss_pred ----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 047873 291 ----LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 291 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
++.|.++|++|...|+.||..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047873 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428 (464)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (464)
+|++|.+.|+.||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-26 Score=218.47 Aligned_cols=411 Identities=9% Similarity=-0.075 Sum_probs=322.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
.+.+|..++..+...|++++|+..|++++. ..|+..++..++.+|.+.|++++|++.|+++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALE-------------------LKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHh-------------------cCccHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 467889999999999999999999999994 3467899999999999999999999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHH-----------
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE----------- 154 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------- 154 (464)
.+.+ |.+..++..++.++...|++++|...|+++.+.++. +......++..+........+.+.+..
T Consensus 66 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 143 (514)
T 2gw1_A 66 LELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL 143 (514)
T ss_dssp HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC--------------
T ss_pred hccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9886 556788999999999999999999999999987754 444444444443332222222222211
Q ss_pred ------------------------HhhCCC---------CCCcccHHHHHHHHHh---cCChhHHHHHHHHHhh-----C
Q 047873 155 ------------------------FGKRGL---------HATAVSFNTLINGHCK---AKNLDEGFRLKSVMEG-----S 193 (464)
Q Consensus 155 ------------------------~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~ 193 (464)
+..... +.+...+......+.. .|++++|...++.+.+ .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence 100000 0113334444444444 8999999999999887 3
Q ss_pred CC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHH
Q 047873 194 GM--------RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265 (464)
Q Consensus 194 ~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 265 (464)
.. +.+..++..+...+...|++++|...|+++.+.... ...+..+...+...|+++ +|...+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~------~A~~~~~~ 295 (514)
T 2gw1_A 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST------EYYNYFDK 295 (514)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT------TGGGHHHH
T ss_pred ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH------HHHHHHHH
Confidence 11 223556788889999999999999999999887533 788888999999998885 99999999
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 047873 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
+..... .+...+..+..++...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+.
T Consensus 296 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 296 ALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 987643 35678888999999999999999999999987654 67788999999999999999999999998764 3466
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL-PA----VETYNALMNGLCK---HGQLKNANMLLDTMLDLGVVPDDIT 417 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~ 417 (464)
..+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 451 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQA 451 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHH
Confidence 78889999999999999999999998875211 11 3378889999999 999999999999998753 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhH
Q 047873 418 YNILLEGHCKHGNPEDFDKLQSE-KGLVSDYAC 449 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~ 449 (464)
+..+...|.+.|++++|.+.+++ +.+.|+...
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 88999999999999999999988 566776443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.9e-25 Score=205.62 Aligned_cols=379 Identities=9% Similarity=-0.024 Sum_probs=258.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
-|.++.+|..++..+...|++++|+..|++++.. .+.+..++..++.+|...|++++|+..|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG------------------DPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678899999999999999999999999999842 2334589999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhcCChhh
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV---YVFNVL------------MHKLCKEGKIKD 147 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~ 147 (464)
+++.+.+ +.+..++..++..+...|++++|...|+++.+..+. +. ..+..+ ...+...|++++
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999886 556788999999999999999999999999986643 44 555555 445899999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
|...|+.+.... +.+..++..+..+|...|++++|...|+.+.+.. +.+..++..++.+|...|++++|+..|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4577889999999999999999999999998753 45788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.... +...+..+.. .. . ......++.++...|++++|...|+.+.+..+.
T Consensus 240 ~~p~-~~~~~~~~~~-~~------------~----------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 240 LDQD-HKRCFAHYKQ-VK------------K----------------LNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HCTT-CHHHHHHHHH-HH------------H----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred hCCC-hHHHHHHHHH-HH------------H----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6322 3333333200 00 0 011222344455555555555555555544221
Q ss_pred CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH
Q 047873 308 LD----NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383 (464)
Q Consensus 308 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 383 (464)
+ ...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|...|++++|...|+++.+.. +-+...+
T Consensus 290 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 366 (450)
T 2y4t_A 290 -IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIR 366 (450)
T ss_dssp -SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred -chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHH
Confidence 1 2244555555555555555555555555432 2244555555555555555555555555555531 1123333
Q ss_pred HHHH------------HHHHhcC-----CHHHHHHHHHH-HHhCC--CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 047873 384 NALM------------NGLCKHG-----QLKNANMLLDT-MLDLG--VVPD-------DITYNILLEGHCKHGNPEDFDK 436 (464)
Q Consensus 384 ~~l~------------~~~~~~g-----~~~~a~~~~~~-~~~~~--~~p~-------~~~~~~l~~~~~~~g~~~~a~~ 436 (464)
..+. ..|...| +.+++.+.+++ ..+.. ..|+ ...+..+..+|...|+.+...+
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 3333 1233333 55666777765 33221 0122 2367778888888887776543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=7.7e-25 Score=208.47 Aligned_cols=403 Identities=12% Similarity=0.011 Sum_probs=304.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
....|..++..+...|++++|++.|++++. ..|+. .++..++.+|.+.|++++|++.|++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIE-------------------LDPNEPVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHh-------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357789999999999999999999999984 34444 8999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC-----
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG----- 159 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 159 (464)
+...+ |.+..++..++.++...|++++|...|+ .....+.+. ...+..+...+....|...++.+....
T Consensus 85 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 85 ALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99886 5577889999999999999999999996 444332211 222334555555667777777775431
Q ss_pred -CCCCcc------------------------------cHHHHHHHHHh--------cCChhHHHHHHHHHhhCCCCCC--
Q 047873 160 -LHATAV------------------------------SFNTLINGHCK--------AKNLDEGFRLKSVMEGSGMRPD-- 198 (464)
Q Consensus 160 -~~~~~~------------------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-- 198 (464)
..|+.. ....+...+.. .|++++|..+++.+.+.. |+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~ 236 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDD 236 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcc
Confidence 011111 11222222111 247889999999988763 33
Q ss_pred ------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC
Q 047873 199 ------VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272 (464)
Q Consensus 199 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (464)
..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++ ++|...++++....+
T Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~- 307 (537)
T 3fp2_A 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS------QEFFKFFQKAVDLNP- 307 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC------HHHHHHHHHHHHHCT-
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH------HHHHHHHHHHhccCC-
Confidence 2356677788889999999999999998873 5577888888888888877 599999999987643
Q ss_pred CCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 047873 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352 (464)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (464)
.+..++..+..++...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 385 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFA 385 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 35778889999999999999999999999987654 56788899999999999999999999998874 44567888999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHH
Q 047873 353 DCFCKNGDTKTGFRLLKEMRSDG-----HLPAVETYNALMNGLCKH----------GQLKNANMLLDTMLDLGVVPDDIT 417 (464)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~ 417 (464)
..+...|++++|...|+++.+.. .......+......+... |++++|...++++.+.. +.+...
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~ 464 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQA 464 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHH
Confidence 99999999999999999987741 111223344556777777 99999999999998753 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 418 YNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
+..+...|.+.|++++|.+.+++ ..+.|+.
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999987 5555653
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.8e-24 Score=199.82 Aligned_cols=367 Identities=12% Similarity=0.031 Sum_probs=290.1
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
.|+. ..+..++..+.+.|++++|+.+|+++.... +.+..++..++.++...|++++|...++++++.++. +..++..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence 4555 899999999999999999999999998875 557888999999999999999999999999998765 7889999
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCc---ccHHHH------------HHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATA---VSFNTL------------INGHCKAKNLDEGFRLKSVMEGSGMRPDV 199 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 199 (464)
++.++...|++++|.+.|+++.+.+ +.+. ..+..+ ...+...|++++|...++.+.+.. +.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9999999999999999999998863 2233 455555 444889999999999999998764 4578
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCH-HhH
Q 047873 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK-ITY 278 (464)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 278 (464)
..+..++.+|...|++++|+++|+++.+.. +.+..++..+...|...|++ ++|+..|+++... .|+. ..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~--~p~~~~~~ 248 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDH------ELSLSEVRECLKL--DQDHKRCF 248 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHh--CCChHHHH
Confidence 889999999999999999999999998764 34788999999999998876 6999999999875 3333 222
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-----HhhHHHHHH
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-----DATYTMVID 353 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~ 353 (464)
..+... . ....+..+...+.+.|++++|...++++.+.. |+ ...+..+..
T Consensus 249 ~~~~~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 249 AHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence 222111 0 11234456788899999999999999998863 44 347888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH----------
Q 047873 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILL---------- 422 (464)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~---------- 422 (464)
++.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+. .| +...+..+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhccc
Confidence 9999999999999999998752 346889999999999999999999999999974 45 456666665
Q ss_pred --HHHHhcC-----CHHHHHHHHHh--cCCCCch-----------hHHHHhhccchhhhhc
Q 047873 423 --EGHCKHG-----NPEDFDKLQSE--KGLVSDY-----------ACYTSLVSKSSKYRQK 463 (464)
Q Consensus 423 --~~~~~~g-----~~~~a~~~~~~--~~~~p~~-----------~~~~~ll~~~~~~~~~ 463 (464)
..|...| +.+++.+.+++ +...||. ..+..+-.++...+|.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 2355555 66677877775 3445542 2455555555555443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-23 Score=196.88 Aligned_cols=378 Identities=11% Similarity=-0.045 Sum_probs=296.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|++.+|..++.++...|++++|++.|++++. ..|+. .++..++.+|.+.|++++|+..|+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALE-------------------LKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-------------------cChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5789999999999999999999999999984 34555 899999999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHH-----------------------------------HHHhcCC---
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL-----------------------------------EILDYGY--- 125 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----------------------------------~~~~~~~--- 125 (464)
++...+ +++......++..+........+.+.+. .+.....
T Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 98 VLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 999886 3444444444443333222222111111 1111000
Q ss_pred ------CCChhhHHHHHHHHHh---cCChhhHHHHHHHHhh-----CCC--------CCCcccHHHHHHHHHhcCChhHH
Q 047873 126 ------SPSVYVFNVLMHKLCK---EGKIKDAQMVFDEFGK-----RGL--------HATAVSFNTLINGHCKAKNLDEG 183 (464)
Q Consensus 126 ------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a 183 (464)
+.+...+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 1114444455555554 8999999999999887 311 12345778888999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 263 (464)
...++.+.+.. |+...+..+..++...|++++|...++++.+... .+...+..+...+...|+++ +|...+
T Consensus 257 ~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~------~A~~~~ 327 (514)
T 2gw1_A 257 HEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYD------QAGKDF 327 (514)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTT------HHHHHH
T ss_pred HHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence 99999998764 3488889999999999999999999999988743 36778889999999999884 999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-
Q 047873 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK- 342 (464)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 342 (464)
+++....+ .+...+..+..++...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+....
T Consensus 328 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 99988643 35678888999999999999999999999987543 6788999999999999999999999999875311
Q ss_pred CC----HhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 047873 343 PD----DATYTMVIDCFCK---NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415 (464)
Q Consensus 343 ~~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 415 (464)
++ ...+..+...+.. .|++++|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+. .|+.
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 11 3388899999999 999999999999998863 346788899999999999999999999999974 4554
Q ss_pred H
Q 047873 416 I 416 (464)
Q Consensus 416 ~ 416 (464)
.
T Consensus 483 ~ 483 (514)
T 2gw1_A 483 E 483 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.7e-21 Score=175.17 Aligned_cols=331 Identities=8% Similarity=-0.026 Sum_probs=250.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
++..|..++..+...|++++|++.|++++. ..|+ ..++..++..+...|++++|+..|++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD-------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 578899999999999999999999999984 2344 48999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC---CCChhhHHHH------------HHHHHhcCChhhHH
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY---SPSVYVFNVL------------MHKLCKEGKIKDAQ 149 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l------------~~~~~~~~~~~~a~ 149 (464)
+.... +.+...+..++..+...|++++|...++++.+..+ . +...+..+ ...+...|++++|.
T Consensus 63 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 63 VIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 98875 44678899999999999999999999999998754 2 45555544 57889999999999
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+...+..
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999998774 4567888999999999999999999999998774 4578889999999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 047873 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309 (464)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (464)
.. +...+..+ ..+. .......+...+.+.|++++|...++.+.+.... +
T Consensus 219 ~~-~~~~~~~~-----------------------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~ 267 (359)
T 3ieg_A 219 QD-HKRCFAHY-----------------------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-V 267 (359)
T ss_dssp TT-CHHHHHHH-----------------------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-S
T ss_pred cc-chHHHHHH-----------------------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 22 22222211 1110 1112233455666777777777777777765433 2
Q ss_pred H----HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 047873 310 N----VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385 (464)
Q Consensus 310 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (464)
. ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. +-+...+..
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 345 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 2 224446667777777777777777777653 3356677777777777777777777777777752 223555555
Q ss_pred HHHHHHh
Q 047873 386 LMNGLCK 392 (464)
Q Consensus 386 l~~~~~~ 392 (464)
+..+...
T Consensus 346 l~~~~~~ 352 (359)
T 3ieg_A 346 LEKAQRL 352 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-21 Score=186.53 Aligned_cols=384 Identities=10% Similarity=0.003 Sum_probs=290.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+.+.|++++|++.|+++...+ |.+..++..++.++...|++++|+..++++++..+. +..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 677888999999999999999999999886 557889999999999999999999999999998765 788999999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHHH------------
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS------GMRPDVYT------------ 201 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~------------ 201 (464)
...|++++|...|+.+... |+ .....+..+...+....|...++.+... ...|+...
T Consensus 104 ~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999744322 22 2222334445555667788888877543 11122211
Q ss_pred ------------------HHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcC
Q 047873 202 ------------------YSALINGLCK--------ENRLDDAELLLHEMCERGLTPND-------VIFTTLIDGHCKNG 248 (464)
Q Consensus 202 ------------------~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~ 248 (464)
...+...+.. .|++++|..+|+++.+.... +. ..+..+...+...|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcc
Confidence 1222222221 24789999999999876432 32 24555666677766
Q ss_pred CcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 047873 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328 (464)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (464)
++ ++|...++++.... |+...+..+..++...|++++|...++.+.+..+. +..++..+...+...|++++
T Consensus 258 ~~------~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 258 NL------LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp CH------HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred cH------HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 65 69999999998864 55788889999999999999999999999988654 78899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999875 3456789999999999999999999999999863 34577889999999999999999999999875
Q ss_pred CC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHh-cCCCCc-hhHHHHhhccchhhhh
Q 047873 409 LG-----VVPDDITYNILLEGHCKH----------GNPEDFDKLQSE-KGLVSD-YACYTSLVSKSSKYRQ 462 (464)
Q Consensus 409 ~~-----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~ 462 (464)
.. .......+.....++... |++++|...+++ ....|+ ...+..+-..+.+.|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 32 111223345556677777 999999999998 555664 5556666665555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.1e-20 Score=168.05 Aligned_cols=330 Identities=12% Similarity=0.022 Sum_probs=266.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+..|+++.... |.+..++..++..+...|++++|...++++++..+. +...+..+..++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 567788899999999999999999998876 556788999999999999999999999999987654 778999999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCC---CCcccHHHH------------HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLH---ATAVSFNTL------------INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
...|++++|...|++..+.. + .+...+..+ ...+...|++++|...++.+.+.. +.+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999998763 2 234444444 578889999999999999998764 457788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 284 (464)
+..++...|++++|...++++.+.. +.+...+..+...+...|++ ++|...+++.....+. +...+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~-~~~~~~~---- 227 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH------ELSLSEVRECLKLDQD-HKRCFAH---- 227 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHCTT-CHHHHHH----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCcc-chHHHHH----
Confidence 9999999999999999999999874 34788889999999998876 6999999998875321 2222221
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCC
Q 047873 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD----ATYTMVIDCFCKNGD 360 (464)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~ 360 (464)
+..+. .......+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|+
T Consensus 228 -------------~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 228 -------------YKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp -------------HHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------HHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccC
Confidence 11111 12333445677889999999999999998864 2233 235567889999999
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKH 428 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 428 (464)
+++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+. .| +...+..+..+....
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 999999999999862 347889999999999999999999999999975 45 466677776666543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=9.3e-19 Score=164.11 Aligned_cols=357 Identities=13% Similarity=0.019 Sum_probs=278.3
Q ss_pred CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 047873 5 LTLHAYSTMVHFLVA----HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVD----LGFLD 76 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 76 (464)
.++.++..|...|.. .+++++|++.|+++... .+..++..|...|.. .++++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--------------------GYTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 367788888888888 88999999999888742 244677778888888 88999
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhH
Q 047873 77 DAIQCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----EGKIKDA 148 (464)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 148 (464)
+|+++|++....+ +..++..+...+.. .+++++|+..|++..+.| ++..+..+..+|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999888765 55667778888877 788999999999888765 66777788888877 7889999
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----ENRLDDAEL 220 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 220 (464)
.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99998888764 66777888888877 788999999998888754 56677777877776 788899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC-----CChHHHH
Q 047873 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE-----GDLESAL 295 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 295 (464)
+|++..+.+ +...+..+...|.... ...++.++|+..|++..+.+ +...+..+...|... +++++|.
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~--~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGL--AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 999888764 4555666666666511 11245679999999887754 445667777777776 8899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHH
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGG---KVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLL 368 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 368 (464)
..+++..+.+ +...+..+...|...| +.++|..+|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999888875 4566777777777655 7888999999888864 56778888888887 78899999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047873 369 KEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 410 (464)
++..+.+ ++..+..+...|.. .+++++|...|++..+.+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9988864 56778888888887 789999999999988765
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=6.8e-19 Score=166.71 Aligned_cols=417 Identities=12% Similarity=0.075 Sum_probs=299.3
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
.|.+..+|..++.. .+.|++++|..+|++++ ...|+. ..|..++..+.+.|++++|+.+
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al-------------------~~~P~~~~~w~~~~~~~~~~~~~~~a~~~ 68 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLV-------------------AQFPSSGRFWKLYIEAEIKAKNYDKVEKL 68 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHH-------------------TTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 36789999999984 78999999999999999 455655 8999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHH-HcCCChhhHHH----HHHHHHhc-CCCC-ChhhHHHHHHHHHh---------cCCh
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRM-MRTNLPTVTLG----FYLEILDY-GYSP-SVYVFNVLMHKLCK---------EGKI 145 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~ 145 (464)
|++..... |+...|...+... ...|+.+.|.+ +|++.+.. |..| +...|...+....+ .|++
T Consensus 69 ~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 69 FQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp HHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred HHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 99999885 4777777776533 45678877765 77776653 4333 56778777776655 6889
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHH-------------HhcCChhHHHHHHHHH------hhCC---CCCC-----
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGH-------------CKAKNLDEGFRLKSVM------EGSG---MRPD----- 198 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~----- 198 (464)
+.|..+|++..+.........|....... .+.+++..|..++..+ .+.. ++|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 99999999998731111123333222211 1245567777776653 2221 2333
Q ss_pred ---HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCccccc-CHHHH
Q 047873 199 ---VYTYSALINGLCKE----NRL----DDAELLLHEMCERGLTPNDVIFTTLIDGHCK-------NGRIDMAG-DMKEA 259 (464)
Q Consensus 199 ---~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~-~~~~a 259 (464)
...|...+...... ++. .++..+|++..... +.+...|......+.+ .|+++.+. -.++|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23454444333222 232 37788999988763 3367888888887775 56541000 01289
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN-VAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
..++++....-.+.+...|..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|++++|..+|++..+
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999986323346788999999999999999999999999986432 33 5899999999999999999999999988
Q ss_pred CCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--C
Q 047873 339 VGLKPDDATYTMVIDC-FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG-VVP--D 414 (464)
Q Consensus 339 ~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~ 414 (464)
.. +.+...+...+.. +...|+.++|..+|++..+.. +.++..|..++..+.+.|+.++|..+|++....+ ..| .
T Consensus 385 ~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 63 2233334333322 346899999999999998862 3368899999999999999999999999999753 223 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC
Q 047873 415 DITYNILLEGHCKHGNPEDFDKLQSE-KGLVS 445 (464)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p 445 (464)
...|...+......|+.+.+.++.++ ....|
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 44788888888899999999888776 33344
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.7e-20 Score=165.38 Aligned_cols=295 Identities=11% Similarity=-0.003 Sum_probs=210.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
++.++..+..++..+...|++++|+++|++++.. .|+. ..+..++..+...|++++|+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~ 78 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-------------------DPFHASCLPVHIGTLVELNKANELFYL 78 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCTTTHHHHHHHHHHHTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------CCCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 4566777888889999999999999999998842 3343 7777788888899999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
++++.... +.+...+..+...+...| ++++|...++++++..+. +...+..+..++...|++++|.+.+++..+..
T Consensus 79 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 79 SHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp HHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 99988875 456778888888999999 899999999999887654 67788889999999999999999999988764
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------- 225 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA--------- 225 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------
Confidence 3356777788889999999999999999988764 446778888999999999999999999888764100
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (464)
.+. ....+....++..+..++...|++++|...+++..+.... +...+..+...+
T Consensus 226 ------~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 280 (330)
T 3hym_B 226 ------IGN------------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIH 280 (330)
T ss_dssp ------TSC------------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHH
T ss_pred ------ccc------------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence 000 0001122334455555555555555555555555554322 445555555555
Q ss_pred hccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 047873 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355 (464)
Q Consensus 321 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (464)
...|++++|...++++.+.. +.+...+..+..++
T Consensus 281 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 281 SLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555555555555555442 22344445555544
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.2e-20 Score=162.24 Aligned_cols=304 Identities=11% Similarity=-0.040 Sum_probs=249.1
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+.+.+..++..++..+...|++++|+++|+++...+ +.+...+..++..+...|++++|...++++++..+. +..++.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHH
Confidence 344455788889999999999999999999998876 456677888888999999999999999999987655 788899
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 134 VLMHKLCKEG-KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 134 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
.+...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998774 4467789999999999999999999999998764 33566777899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChH
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 292 (464)
|++++|.+.++++.+.. +.+...+..+...+...|++ ++|...++++...... .++
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~a~~~~~~---------------~~~-- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEW------KTAEKWFLDALEKIKA---------------IGN-- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHTT---------------TSC--
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccH------HHHHHHHHHHHHHhhh---------------ccc--
Confidence 99999999999998874 33678889999999998876 6999999887653110 000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047873 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372 (464)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (464)
....+....++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.
T Consensus 229 ----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 229 ----------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp ----------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ----------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11123346789999999999999999999999999875 4467889999999999999999999999998
Q ss_pred hCCCCcCHHHHHHHHHHH-HhcCCHH
Q 047873 373 SDGHLPAVETYNALMNGL-CKHGQLK 397 (464)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~-~~~g~~~ 397 (464)
+.. +.+...+..+..++ ...|+.+
T Consensus 298 ~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 298 GLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred ccC-CCchHHHHHHHHHHHHHhCchh
Confidence 863 33677888888888 4556544
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.1e-17 Score=154.88 Aligned_cols=352 Identities=13% Similarity=0.034 Sum_probs=297.7
Q ss_pred CChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCC
Q 047873 57 LPGLVLDALMIVYVD----LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPS 128 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 128 (464)
.+..++..+...|.. .+++++|+..|++..+.+ +..++..+...+.. .+++++|..+|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 355788888888888 899999999999998875 56788888999988 899999999999999865 6
Q ss_pred hhhHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHH
Q 047873 129 VYVFNVLMHKLCK----EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVY 200 (464)
Q Consensus 129 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 200 (464)
+..+..+...|.. .+++++|.+.|++....+ +...+..+...|.. .+++++|.++|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7788888889988 889999999999998875 56778888888887 789999999999998864 677
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH
Q 047873 201 TYSALINGLCK----ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276 (464)
Q Consensus 201 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (464)
.+..+...|.. .+++++|.++|++..+.+ +...+..+...|..... ..+++++|..+|++....+ +..
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG--VTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCC---CHH
Confidence 88889999988 899999999999999875 56677777777775211 1345689999999998864 455
Q ss_pred hHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHCCCCCCHhh
Q 047873 277 TYTILLDGFCK----EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG-----GKVVEAERMLREMLKVGLKPDDAT 347 (464)
Q Consensus 277 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~ 347 (464)
.+..+...+.. .+++++|...|+...+.+ +...+..+...|... +++++|...+++..+.+ +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 67777888887 899999999999998875 556777888888777 89999999999999875 5567
Q ss_pred HHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047873 348 YTMVIDCFCKNG---DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLGVVPDDITYNI 420 (464)
Q Consensus 348 ~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 420 (464)
+..+...|...| ++++|.+.|++..+. .++..+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 778888887766 789999999999987 367888899999998 899999999999999864 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHh
Q 047873 421 LLEGHCK----HGNPEDFDKLQSE 440 (464)
Q Consensus 421 l~~~~~~----~g~~~~a~~~~~~ 440 (464)
+...|.. .+++++|.+.+++
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999988 8999999999987
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7.7e-20 Score=165.12 Aligned_cols=327 Identities=10% Similarity=-0.007 Sum_probs=205.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHH-HHHHHHhcCCC---CChhhHHHHHHHHHhcCChhh
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG-FYLEILDYGYS---PSVYVFNVLMHKLCKEGKIKD 147 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 147 (464)
.+.++.+...|+.+.+.+. + .+...|++++|+. .+++.....+. .+...+..+...+...|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDA--E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHcCCc--h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 3445555556665544431 1 2233477788877 77766544322 135667788888888899999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..++...|++++|.+.++++.+
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888888764 4466778888888888999999999988887764 44677888889999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.... +...+..+... . .. ..+. ..+..+...+ ..|++++|...++++.+..+.
T Consensus 161 ~~~~-~~~~~~~~~~~---~----------~~-----------~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEG---A----------GG-----------AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp TSTT-TGGGCC----------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT
T ss_pred hCcC-cHHHHHHHHHH---h----------hh-----------hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC
Confidence 6422 22111111000 0 00 0000 1111222223 667788888888888776433
Q ss_pred C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 308 L-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 308 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
. +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l 291 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNL 291 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 2 46777788888888888888888888877754 3456778888888888888888888888887752 3356778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGVV----------PDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..+|.+.|++++|...++++.+.... ....+|..+..+|...|++++|..+.++
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888888888888888887753111 0257788888888888888888877653
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=3.8e-19 Score=160.53 Aligned_cols=314 Identities=11% Similarity=-0.058 Sum_probs=215.4
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH-HHHHHhhCCC---CCCcccHHHHHHHHHhcCChhHH
Q 047873 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM-VFDEFGKRGL---HATAVSFNTLINGHCKAKNLDEG 183 (464)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 183 (464)
+.+..+...|+.+.+.+. + ++...|++++|.. .+++...... ..+...+..+...+...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDA--E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCCc--h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555544332 1 2344578888988 8876554321 11356788999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 263 (464)
...++++.+.. +.+..++..+..++...|++++|.+.|+++.+... .+...+..+...+...|++ ++|...+
T Consensus 84 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~------~~A~~~~ 155 (368)
T 1fch_A 84 VLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQ------RQACEIL 155 (368)
T ss_dssp HHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH------HHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCH------HHHHHHH
Confidence 99999999875 45778899999999999999999999999998753 3788899999999998876 6999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC
Q 047873 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343 (464)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (464)
+++....+. +...+..+... .. . .. ....+..+...+ ..|++++|...++++.+.....
T Consensus 156 ~~~~~~~~~-~~~~~~~~~~~-------~~-------~----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 156 RDWLRYTPA-YAHLVTPAEEG-------AG-------G----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHTSTT-TGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHhCcC-cHHHHHHHHHH-------hh-------h----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc
Confidence 999886432 22222111110 00 0 00 011122233333 8899999999999998864211
Q ss_pred -CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 344 -DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 344 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 292 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLG 292 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 57889999999999999999999999998863 3467899999999999999999999999998752 34688999999
Q ss_pred HHHHhcCCHHHHHHHHHh-cCCCCc------------hhHHHHhhccchhhhhc
Q 047873 423 EGHCKHGNPEDFDKLQSE-KGLVSD------------YACYTSLVSKSSKYRQK 463 (464)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~-~~~~p~------------~~~~~~ll~~~~~~~~~ 463 (464)
.+|.+.|++++|.+.+++ +.+.|+ ...|..+..++.+.|+.
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999999999999887 333333 46777777777776653
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.4e-18 Score=159.85 Aligned_cols=387 Identities=10% Similarity=-0.079 Sum_probs=222.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.....||.|+.++...|++++|++.|++++. +....... ...|+. .+|+.+..+|...|++++|+..|+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~---------~~~~~~~~-~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ 118 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEE---------LIQQEHAD-QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD 118 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HHHHHSGG-GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------HHHhcCcc-ccchHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3456799999999999999999999999873 22222221 223444 789999999999999999999999
Q ss_pred HHHhCC----C---CCChhcHHHHHHHHHc--CCChhhHHHHHHHHHhcCCCCChhhHHHHHHH---HHhcCChhhHHHH
Q 047873 84 LLRKHY----F---RIPARGCRCLIDRMMR--TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK---LCKEGKIKDAQMV 151 (464)
Q Consensus 84 ~~~~~~----~---~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~ 151 (464)
+..... . .....++.....++.. .+++++|++.|+++++..+. ++..+..+..+ +...++.++|++.
T Consensus 119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 876431 0 1123455555555544 46799999999999987765 66666665555 4456888899999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
+++..+.+ +.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+
T Consensus 198 ~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 99887764 3355566655555544 467889999999887764 45677889999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
..+. +...+..+..+|...+.. .. ... ... ........+..+.|...++...+.++.
T Consensus 276 ~~p~-~~~~~~~lg~~y~~~~~~-----------~~----~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 276 YIPN-NAYLHCQIGCCYRAKVFQ-----------VM----NLR-ENG------MYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HSTT-CHHHHHHHHHHHHHHHHH-----------HH----HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hCCC-hHHHHHHHHHHHHHHHHH-----------hh----hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 7432 566666666555432110 00 000 000 000001112234555555555544322
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHh--hHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA--TYTMVID-CFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (464)
+...+..+...+...|++++|...|+++.+....+... .+..+.. .....|++++|+..|++..+. .|+.....
T Consensus 333 -~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~ 409 (472)
T 4g1t_A 333 -LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE 409 (472)
T ss_dssp -TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred -hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 33444555555555555555555555555543222111 1111111 123445555666665555553 22221111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+....+.++++...+.+ +.+..+|..+..+|...|++++|.+.+++
T Consensus 410 ---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 410 ---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp ---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------
T ss_pred ---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11222333444443321 23455555666666666666666666555
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.4e-17 Score=157.82 Aligned_cols=396 Identities=11% Similarity=0.018 Sum_probs=281.4
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
.|++ .+|..++. +.+.|++++|+.+|+++.... |.+...|...+..+.+.|++++|..+|++++... |+...|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 4544 89999998 478999999999999999885 6678889999999999999999999999999865 57778877
Q ss_pred HHHHH-HhcCChhhHHH----HHHHHhhC-CCCC-CcccHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCCC
Q 047873 135 LMHKL-CKEGKIKDAQM----VFDEFGKR-GLHA-TAVSFNTLINGHCK---------AKNLDEGFRLKSVMEGSGMRPD 198 (464)
Q Consensus 135 l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~ 198 (464)
++... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77533 45688887766 66666543 4433 45677777776654 6889999999999987311111
Q ss_pred HHHHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhcC
Q 047873 199 VYTYSALINGL-------------CKENRLDDAELLLHEMC------ERG---LTPN--------DVIFTTLIDGHCKNG 248 (464)
Q Consensus 199 ~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~~ 248 (464)
...|....... .+.+++..|..++.... +.. ++|+ ...|...+......+
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23333222211 13456777877776632 211 2333 234555544332221
Q ss_pred CcccccC----HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------CCChH-------HHHHHHHHHHHcCCCCCH
Q 047873 249 RIDMAGD----MKEARKIVDEMCTNGLNPDKITYTILLDGFCK-------EGDLE-------SALDIRKEMIKRGIELDN 310 (464)
Q Consensus 249 ~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~ 310 (464)
. ..++ ...+..+|++..... +.+...|...+..+.+ .|+++ +|..++++.++.-.+-+.
T Consensus 245 ~--~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 245 L--RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp S--CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred c--cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1 0112 136778899988753 3467788888887775 79987 899999999873223368
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-H-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-D-ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (464)
..|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 89999999999999999999999999986 444 2 478888898999999999999999999862 223333333332
Q ss_pred H-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCC---CCc--hhHHHHhhccchhhh
Q 047873 389 G-LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGL---VSD--YACYTSLVSKSSKYR 461 (464)
Q Consensus 389 ~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~---~p~--~~~~~~ll~~~~~~~ 461 (464)
. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..++++ ... .|+ ...|...+....++|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999998752 33688999999999999999999999998 332 332 336666665555555
Q ss_pred h
Q 047873 462 Q 462 (464)
Q Consensus 462 ~ 462 (464)
+
T Consensus 478 ~ 478 (530)
T 2ooe_A 478 D 478 (530)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.4e-19 Score=163.19 Aligned_cols=265 Identities=8% Similarity=-0.118 Sum_probs=212.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+..+|..++..+.+.|++++|++.|++++. ..|+ ..++..++..|...|++++|++.|+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAIL-------------------QDPGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3566799999999999999999999999984 2344 4899999999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh----------HHHHHHHHHhcCChhhHHHHHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV----------FNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
++.... +.+..++..++..+...|++++|...++++++..+. +... +..+...+...|++++|.+.|+
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999876 556788999999999999999999999999886533 2222 3345888999999999999999
Q ss_pred HHhhCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047873 154 EFGKRGLHA--TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231 (464)
Q Consensus 154 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 231 (464)
++.+.. +. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|+..|+++.+...
T Consensus 202 ~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 278 (365)
T 4eqf_A 202 EAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP- 278 (365)
T ss_dssp HHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 998874 22 57789999999999999999999999998764 44688999999999999999999999999988742
Q ss_pred CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHhCCChHHHHHHHH
Q 047873 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-----------PDKITYTILLDGFCKEGDLESALDIRK 299 (464)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (464)
.+...+..+..+|...|++ ++|...|+++....+. .+...|..+..++...|+.+.+..+..
T Consensus 279 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAY------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCC------HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3588899999999999988 5999999998764211 024556667777777777766665544
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2.9e-19 Score=161.14 Aligned_cols=276 Identities=13% Similarity=0.005 Sum_probs=188.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (464)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888889999999999999999988764 4567888999999999999999999999988764 346788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDV-IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (464)
+|...|++++|+..|+++.+.. |+.. .+..+. .....+..+..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------------GSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------------cchHHHHHHHHHHh
Confidence 9999999999999999988752 2211 110000 01223444555666
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 047873 287 KEGDLESALDIRKEMIKRGIEL-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365 (464)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 365 (464)
..|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6677777777777766654321 45667777777777777777777777776653 345667777777777777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHH
Q 047873 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV---V--------PDDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--------p~~~~~~~l~~~~~~~g~~~~a 434 (464)
..|+++.+.. +.+..++..+..+|.+.|++++|...++++.+... . .+...|..+..++...|+.+.+
T Consensus 268 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 268 EAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 7777777652 22466777777777777777777777777764210 0 1356778888888888888888
Q ss_pred HHHHHh
Q 047873 435 DKLQSE 440 (464)
Q Consensus 435 ~~~~~~ 440 (464)
.++.++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 877664
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1e-18 Score=154.98 Aligned_cols=267 Identities=8% Similarity=-0.119 Sum_probs=219.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+...|..++..+...|++++|+..|++++.. .+.+..++..++..+...|++++|++.|+++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA------------------APEREEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788899999999999999999999842 2234488899999999999999999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH--------------HH-HHHhcCChhhHHH
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL--------------MH-KLCKEGKIKDAQM 150 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~ 150 (464)
.... +.+..++..++..+...|++++|...++++.+..+. +...+..+ .. .+...|++++|.+
T Consensus 82 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 82 RMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHH
T ss_pred HhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 8875 556788999999999999999999999999987654 44444444 33 4778899999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+..
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 999998774 4467889999999999999999999999998764 4467889999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHhCCChHHHHHHHH
Q 047873 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP-----------DKITYTILLDGFCKEGDLESALDIRK 299 (464)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (464)
+.+...+..+...+...|++ ++|...++++....... +..++..+..++...|++++|..+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQY------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhccH------HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 23678888999999998876 69999999987753321 35677888888888888888888876
Q ss_pred HH
Q 047873 300 EM 301 (464)
Q Consensus 300 ~~ 301 (464)
..
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=8e-18 Score=149.13 Aligned_cols=277 Identities=9% Similarity=-0.036 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...++++.+..+. +..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 567778888889999999999999988775 446777888888888999999999999998887654 777888888889
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHhcCChhH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN--GLCKENRLDD 217 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 217 (464)
...|++++|.+.++++.... +.+...+..+.... |+......+.. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 99999999999998887763 22333333321000 00000111111 1334444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHH
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
|.+.++++.+... .+...+..+...+...|++ ++|...++++.... +.+..++..+..++...|++++|...
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~------~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNY------DSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccH------HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444321 1344444444444444433 34555554444432 12344455555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-----------CHhhHHHHHHHHHhcCChHHHHH
Q 047873 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-----------DDATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
++++.+.... +...+..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|..
T Consensus 229 ~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 229 YNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 5555554322 44555555555556666666666665555432110 24455556666666666666666
Q ss_pred HHHH
Q 047873 367 LLKE 370 (464)
Q Consensus 367 ~~~~ 370 (464)
++++
T Consensus 308 ~~~~ 311 (327)
T 3cv0_A 308 TYAQ 311 (327)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 5543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.1e-17 Score=147.83 Aligned_cols=292 Identities=10% Similarity=0.057 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+.+-+.|+ ...|++++|.+.++++- ++.+|..++.++.+.|++++|++.|.+
T Consensus 6 ~~a~~~ll---~~~~~ld~A~~fae~~~-----------------------~~~vWs~La~A~l~~g~~~eAIdsfik-- 57 (449)
T 1b89_A 6 TSAVQVLI---EHIGNLDRAYEFAERCN-----------------------EPAVWSQLAKAQLQKGMVKEAIDSYIK-- 57 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HHccCHHHHHHHHHhCC-----------------------ChHHHHHHHHHHHHcCCHHHHHHHHHc--
Confidence 34444444 36788999999888763 235999999999999999999999965
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
.++...|..++..+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 58 ----a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a 124 (449)
T 1b89_A 58 ----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAH 124 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTT-------CC----
T ss_pred ----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHH
Confidence 246668999999999999999999987777663 3467888899999999999999888885 367779
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (464)
|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|..
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 189 (449)
T ss_dssp ------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHH
Confidence 999999999999999999999976 36889999999999999999999988 278999999999999
Q ss_pred cCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 047873 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326 (464)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (464)
.|++ +.|......+. ..+.-...++..|.+.|++++|..+++..+... +.....|+-+.-+|++- ++
T Consensus 190 ~~ef------~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p 256 (449)
T 1b89_A 190 GKEF------RLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP 256 (449)
T ss_dssp TTCH------HHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CH
T ss_pred cCcH------HHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CH
Confidence 8876 57755444322 233335568889999999999999999988765 34667788777777654 33
Q ss_pred HHHHHHHHHHHH-CCCCC------CHhhHHHHHHHHHhcCChHHHHHH
Q 047873 327 VEAERMLREMLK-VGLKP------DDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 327 ~~a~~~~~~~~~-~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
++..+.++.... .+++| +...|..+...|.+.++++.|...
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 444333333222 22333 456788888999999999988763
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=8.8e-16 Score=151.42 Aligned_cols=377 Identities=13% Similarity=0.133 Sum_probs=253.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHHh-cCCCCC----------hhhHHHHHHHHHhcC
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG-MGSSASLFASILET-RGTHLP----------GLVLDALMIVYVDLG 73 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~----------~~~~~~l~~~~~~~g 73 (464)
+++--...+++|...|.+.+|+++|++++..++ +...+.+-..++.. ....+. ......++..+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 344446778899999999999999999984433 22222332223222 000111 122334577788888
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
.+++|..+|++... ...+...++. ..+++++|.++.+++ -++.+|..+..++...|++++|...|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888887521 1122222222 567888888887755 257788888888888888888888886
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
+. .|...|..++.++.+.|++++|.++|...++.. +++...+.++.+|++.+++++...+. + .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 53 366777788888888888888888888777653 33333445888888888877533332 2 235
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
...|..+...|...|++ ++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|
T Consensus 1195 ~ad~~~iGd~le~eg~Y------eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMY------DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred HHHHHHHHHHHHhcCCH------HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 56666777777777766 5888888875 267888888888888888888887662 56788
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 047873 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (464)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+.+...|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 88888888888888888766542 2355667788888888888888888887777653 23445566666666653
Q ss_pred --CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 394 --GQLKNANMLLDTMLDLGVVP------DDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 394 --g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
++..++.++|..-. +++| +...|.-++-.|.+.|+++.|...+-+
T Consensus 1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 34555555554332 2222 466788888888888888887765544
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=5e-18 Score=140.48 Aligned_cols=201 Identities=11% Similarity=-0.035 Sum_probs=165.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
+|+++.+|..++..+...|++++|+..|++++ ...|+. .++..+...+.+.|++++|+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 61 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERAL-------------------KENPQDPEALYWLARTQLKLGLVNPALEN 61 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------TTSSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47889999999999999999999999999999 566666 9999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcC-----------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRT-----------NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
|++..+.+ |.+...+..+...+... |++++|+..++++++..+. +...+..+..++...|++++|..
T Consensus 62 ~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 62 GKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHH
Confidence 99999886 55678899999999999 9999999999999998765 78899999999999999999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.|++..+.+ .+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|++.|++...
T Consensus 140 ~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 140 SLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999998886 678889999999999999999999999998764 44677888999999999999999999987643
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.1e-16 Score=146.53 Aligned_cols=351 Identities=10% Similarity=-0.038 Sum_probs=206.1
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC-----C-
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDY--------GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-----G- 159 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 159 (464)
...|+.+...+...|++++|++.|++.++. .......+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666677777777766665432 01113455666777777777777777777665432 0
Q ss_pred CC-CCcccHHHHHHHHHh--cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 160 LH-ATAVSFNTLINGHCK--AKNLDEGFRLKSVMEGSGMRPDVYTYSALING---LCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 160 ~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
.. ....++..+..++.. .+++++|...|++..+.. +-++..+..+..+ +...++.++|++.+++..+... .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 00 112344444444443 345777777777776543 2233344444333 3345666777777777666532 24
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
...+..+...+...+.. .+++++|...+++..... +.+..++..+...+...|++++|...+++..+..+. +..++
T Consensus 209 ~~~~~~l~~~~~~~~~~--~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREE--GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC--------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred hHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 45555555455444332 233457777777776643 234566777777777778888888877777776443 45555
Q ss_pred HHHHHHHhc-------------------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 314 TALISGFCR-------------------GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 314 ~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
..+...|.. .+..+.|...+++..... +.+...+..+...+...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 555544432 234667888888887764 446678899999999999999999999999986
Q ss_pred CCCcCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC-chhH
Q 047873 375 GHLPAV--ETYNALMN-GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVS-DYAC 449 (464)
Q Consensus 375 ~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p-~~~~ 449 (464)
...+.. ..+..+.. .+...|++++|+..+++.++. .|+.......+. .+.+++++ +...| +..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~---------~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKD---------KLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHH---------HHHHHHHHHHHHCC-CTTH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHH---------HHHHHHHHHHHhCCCCHHH
Confidence 433322 12333333 245789999999999999874 565443333222 23333333 23344 3555
Q ss_pred HHHhhccchhhhh
Q 047873 450 YTSLVSKSSKYRQ 462 (464)
Q Consensus 450 ~~~ll~~~~~~~~ 462 (464)
|..+=..+...|+
T Consensus 433 ~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 433 LHVLAFLQELNEK 445 (472)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC
Confidence 5555444444444
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=4.4e-17 Score=143.97 Aligned_cols=363 Identities=12% Similarity=0.038 Sum_probs=178.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
.+.+|+.|+.++.+.|++++|++.|.++ +|...|..++..+...|++++|++.++..
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----------------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4569999999999999999999999653 34568888899999999999999988766
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
.+. .+++.+...++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...|..+ .
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 664 3456778889999999999999988774 267789999999999999999999999976 4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047873 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245 (464)
Q Consensus 166 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (464)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHH
Confidence 7999999999999999999999998 278999999999999999999976665532 24444557889999
Q ss_pred hcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC------CHHHHHHHHH
Q 047873 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR-GIEL------DNVAFTALIS 318 (464)
Q Consensus 246 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 318 (464)
+.|++ ++|..+++...... +.....|+.+...|++- ++++.++-++....+ +++| +...|..+..
T Consensus 219 k~G~~------eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 219 DRGYF------EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HTTCH------HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HCCCH------HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 98876 69999999998764 45677888887777764 455555444433222 2222 3467888999
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH-------------HH
Q 047873 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY-------------NA 385 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~ 385 (464)
.|.+.++++.|... |.+. +++..--..+.....+..+.+--.+...-..+. .|. .. +.
T Consensus 291 ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~--~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHH
T ss_pred HHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccCcHH
Confidence 99999999988773 3333 233333333334444444433222222222211 111 12 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 386 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+..+.+.|...-+..+++..+.. -+..+=.++-..|...++++.-+...+.
T Consensus 362 ~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 362 AVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344455666666666666555543 2344444555667777777776666554
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=8.6e-17 Score=139.16 Aligned_cols=251 Identities=14% Similarity=0.102 Sum_probs=177.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
....|+++.|+..++++..............+.+++...|+++.|+..++. ..+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 445789999999888765543221234556677888889999888876644 2335667778888888888888999
Q ss_pred HHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998887765434 455566677888888999998888876 35677888888888888899999888888887
Q ss_pred CCCCCCHHHHH---HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 228 RGLTPNDVIFT---TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 228 ~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
.. |+..... .++..+...|+ +++|..+|+++.... +.+...++.+..++.+.|++++|...++++++.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~------~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEK------LQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTH------HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchH------HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 63 3432111 12222333343 367888888877752 346667777777778888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHC
Q 047873 305 GIELDNVAFTALISGFCRGGKVVE-AERMLREMLKV 339 (464)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 339 (464)
.+. +..++..++..+...|+.++ +..+++++.+.
T Consensus 230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 544 66777777777777777765 45777777765
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.4e-16 Score=137.84 Aligned_cols=248 Identities=15% Similarity=0.056 Sum_probs=120.4
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCc--ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATA--VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 216 (464)
....|++..|+..++..... .|+. .....+.++|...|+++.|...++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33445555555544443322 1111 12233444555555555555433221 1334444555555555555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 217 DAELLLHEMCERGLTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 217 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+|++.++++...+..| +...+..+...+...|++ ++|++.+++ +.+...+..++.++.+.|++++|.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~------~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP------DAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH------HHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH------HHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555443222 233333444455554443 355555544 234445555555555555666665
Q ss_pred HHHHHHHHcCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047873 296 DIRKEMIKRGIELDNVA---FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (464)
..++.+.+.. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555543 22111 1112223334455666666666665542 3455555666666666666666666666655
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 047873 373 SDGHLPAVETYNALMNGLCKHGQLKN-ANMLLDTMLD 408 (464)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 408 (464)
+.. +-++.++..++..+...|+.++ +.++++++.+
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 542 2245555556656666666544 3455555554
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.1e-14 Score=143.68 Aligned_cols=354 Identities=12% Similarity=0.091 Sum_probs=249.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
-++.++...|.+++|..+|+++. ......+.+ +...|++++|.++++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----------------------~~~~A~~VL---ie~i~nldrAiE~Aerv------ 1102 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----------------------VNTSAVQVL---IEHIGNLDRAYEFAERC------ 1102 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----------------------CHHHHHHHH---HHHHhhHHHHHHHHHhc------
Confidence 35677888999999999999863 111222222 22678888888888864
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
.++.+|..++.++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 24668888888888889999998888664 377788888888888999999998888776653 3444455688
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
.+|++.+++++...+ ++ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++
T Consensus 1175 faYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~- 1237 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY- 1237 (1630)
T ss_pred HHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCH-
Confidence 888888887753333 22 456667777888888889999999888885 3688888888888765
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.
T Consensus 1238 -----q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1238 -----QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred -----HHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5888888876 35578888888888888888888766542 2256677788888888899999998
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCc------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCKN--GDTKTGFRLLKEMRSDGHLP------AVETYNALMNGLCKHGQLKNANMLL 403 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 403 (464)
+++...... +-....|+.+...|++. ++..++.+.|..-.. ++| +...|..+.-.|.+.|+++.|....
T Consensus 1302 LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1302 MLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 888877654 23334565555555543 345555555554333 222 4567888888888888888887322
Q ss_pred -------------HHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHhcC
Q 047873 404 -------------DTMLDLGVVPDDITYNILLEGHCKHG---------------NPEDFDKLQSEKG 442 (464)
Q Consensus 404 -------------~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~ 442 (464)
+.... -..|+..|...+.-|...+ +++.+.+++++.+
T Consensus 1379 ~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1379 MNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred HhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence 12111 2346777777777777666 7777777777543
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=3.1e-16 Score=144.67 Aligned_cols=381 Identities=11% Similarity=0.012 Sum_probs=252.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHh
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFL---DDAIQCFRLLRK 87 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~ 87 (464)
..+...+.+.|++++|+++|+++... + +..++..+..+|...|+. ++|+++|++...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----------------g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~ 66 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----------------G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------T---CCTGGGTCC------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----------------C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh
Confidence 34677788999999999999998742 1 234556677777778888 999999998875
Q ss_pred CCCCCChhcHHHHHHHHHcCC-----ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh---HHHHHHHHhhCC
Q 047873 88 HYFRIPARGCRCLIDRMMRTN-----LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD---AQMVFDEFGKRG 159 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~ 159 (464)
. ++.++..+...+...+ ++++|...|++..+.|. +..+..|...|...+..+. +.+.+......|
T Consensus 67 ~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 67 T----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred C----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 4 5567777777565555 77899999999998763 3477788888887765444 455555555444
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHH
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN---RLDDAELLLHEMCERGLTPNDVI 236 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 236 (464)
+......+...|...+.++.+......+.+.-...++..+..|..+|...| +.++|++.|++..+.|. ++...
T Consensus 140 ---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~ 215 (452)
T 3e4b_A 140 ---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQR 215 (452)
T ss_dssp ---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHH
T ss_pred ---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHH
Confidence 456777888888888866665555333332211233447888999999999 89999999999999874 35555
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-H--HhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG-F--CKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
+..+...|.... ....++++|+..|++.. . -+...+..+... + ...+++++|...|++..+.| +...+
T Consensus 216 ~~~Lg~~y~~g~--~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 216 VDSVARVLGDAT--LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp HHHHHHHHTCGG--GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHhCCC--CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 566666664431 11356789999999987 3 345566667766 4 46899999999999999886 56777
Q ss_pred HHHHHHHhccC-----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHH
Q 047873 314 TALISGFCRGG-----KVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLLKEMRSDGHLPAVETYN 384 (464)
Q Consensus 314 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (464)
..+...|. .| ++++|..+|++.. . .+...+..+...|.. ..++++|...|++..+.|. .....
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~ 358 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADF 358 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHH
Confidence 77877776 55 9999999999988 3 366777788877776 4499999999999998753 44566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 385 ALMNGLCK----HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 385 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+...|.. ..+..+|...++...+.|. ++.......+......++.++|.++.++
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67777764 5689999999999998763 2332222222222233355556666654
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=165.47 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 310 NVAFTALISGFCRGGKVVEAERMLREMLK---VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34666666666666666666666666543 356667777777777777777777777777777666667777777777
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047873 387 MNGLCKHGQL-KNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428 (464)
Q Consensus 387 ~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (464)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 7776666653 56666777776666777777776666555544
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=1.1e-15 Score=136.63 Aligned_cols=255 Identities=10% Similarity=0.004 Sum_probs=208.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC-hhHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF-LDDAIQCF 82 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~ 82 (464)
....+|+.+..++...|++++|++.|++++ ...|+. .+|+.+..++...|+ +++|+..|
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al-------------------~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~ 155 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAI-------------------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 155 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHH-------------------HhCccCHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 346789999999999999999999999999 456666 999999999999997 99999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+++...+ +-+..+|..+..++...|++++|+..|+++++..+. +..+|..+..++...|++++|+..|+++.+.+ +.
T Consensus 156 ~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~ 232 (382)
T 2h6f_A 156 TAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VR 232 (382)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC
Confidence 9999986 557889999999999999999999999999998876 89999999999999999999999999999875 44
Q ss_pred CcccHHHHHHHHHh-cCChhHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCH
Q 047873 163 TAVSFNTLINGHCK-AKNLDEG-----FRLKSVMEGSGMRPDVYTYSALINGLCKEN--RLDDAELLLHEMCERGLTPND 234 (464)
Q Consensus 163 ~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 234 (464)
+...|+.+..++.. .|..++| +..+++.+... +-+...|..+..++...| ++++|++.+..+ +. .+.+.
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~ 309 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSP 309 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCH
Confidence 77889999999999 6665888 48888887764 346778888999999888 689999999888 43 23467
Q ss_pred HHHHHHHHHHHhcCCc--ccccC-HHHHHHHHHHH-HhCCCCCC-HHhHHHHHHHHH
Q 047873 235 VIFTTLIDGHCKNGRI--DMAGD-MKEARKIVDEM-CTNGLNPD-KITYTILLDGFC 286 (464)
Q Consensus 235 ~~~~~l~~~~~~~~~~--~~~~~-~~~a~~~~~~~-~~~~~~~~-~~~~~~l~~~~~ 286 (464)
..+..+..+|.+.++. +..++ +++|+.+++++ .+. .|. ...|..+...+.
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 7888888888886421 00112 37899999998 654 343 445555555443
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=8.6e-18 Score=160.48 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHhh---CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGK---RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC------HHhH
Q 047873 206 INGLCKENRL-DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD------KITY 278 (464)
Q Consensus 206 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 278 (464)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+ +.+++.++++ ..+..|+ ..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----------~~vL~~Vrkv-~P~f~p~~~~~~~~~t~ 275 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----------ATVLKAVHKV-KPTFSLPPQLPPPVNTS 275 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----------HHHHHHHGGG-CCCCCCCCCCCCCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----------HHHHHHHHHh-CcccCCCCCCcccccch
Confidence 9999999985 7899999999999999999999999877666 3556666655 3333333 3344
Q ss_pred HHHHHHHHhCC
Q 047873 279 TILLDGFCKEG 289 (464)
Q Consensus 279 ~~l~~~~~~~~ 289 (464)
..|...|.+.+
T Consensus 276 ~LL~dl~s~d~ 286 (1134)
T 3spa_A 276 KLLRDVYAKDG 286 (1134)
T ss_dssp TTTHHHHCCCS
T ss_pred HHHHHHHccCC
Confidence 55556666544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=7.4e-16 Score=127.41 Aligned_cols=201 Identities=14% Similarity=-0.021 Sum_probs=165.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
+++...+..+...+.+.|++++|+..|++..+.+ |.+...+..+...+.+.|++++|+..++++++..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4555888999999999999999999999999886 567889999999999999999999999999998765 78899999
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 136 MHKLCKE-----------GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 136 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
..++... |++++|...|++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998874 3467788999999999999999999999999876 68889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
+..++...|++++|+..|++..+..+ .+...+..+...+...|++ ++|+..+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKA------EEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCH------HHHHHHHHHHhh
Confidence 99999999999999999999998743 3677888889999998887 488888887643
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=5e-16 Score=131.22 Aligned_cols=203 Identities=8% Similarity=-0.037 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
..++.+|..++..+...|++++|++.|++++ ...|+. .++..++..+...|++++|++.|
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 80 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAI-------------------EENKEDAIPYINFANLLSSVNELERALAFY 80 (243)
T ss_dssp ----------------------CCTTHHHHH-------------------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-------------------HhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566788899999999999999999999998 444544 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+++.... +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.
T Consensus 81 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 157 (243)
T 2q7f_A 81 DKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-EN 157 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cc
Confidence 9998875 456788899999999999999999999999987654 78889999999999999999999999988764 44
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|.+.++++.+..
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 67788899999999999999999999988764 3467889999999999999999999999998874
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=2.5e-15 Score=127.73 Aligned_cols=202 Identities=13% Similarity=-0.058 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+..|..++..+...|++++|++.|++++.. .+.+..++..++..|...|++++|++.|+++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678999999999999999999999999842 12334889999999999999999999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
... +.+...+..++..+...|++++|...++++.+.+..| +...+..+..++...|++++|.+.+++..+.. +.+..
T Consensus 99 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 176 (252)
T 2ho1_A 99 ASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPS 176 (252)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHH
Confidence 875 4467888999999999999999999999998832223 56788889999999999999999999988764 34577
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 166 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999998764 4567788889999999999999999999998873
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=3.4e-15 Score=128.39 Aligned_cols=199 Identities=9% Similarity=0.034 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
|...+...+..+...|++++|++.|++++. ..|+. .++..++..|...|++++|++.|++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEA-------------------KKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345677788889999999999999999883 34555 6888889999999999999999999
Q ss_pred HHhCCCCCChh----cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 85 LRKHYFRIPAR----GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 85 ~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+.... ++.. ++..++..+...|++++|+..++++.+..+. +..++..+..++...|++++|...|++..+..
T Consensus 63 a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 138 (272)
T 3u4t_A 63 YFSKV--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT- 138 (272)
T ss_dssp HHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-
T ss_pred HHhcc--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-
Confidence 88742 3332 3788888888999999999999998887654 67788888888999999999999998887763
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR---LDDAELLLHEMCER 228 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 228 (464)
+.+...+..+...+...+++++|...++.+.+.. +.+...+..+..++...|+ +++|...+++..+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 3355666666634445568888888888887653 3346677777777777777 77788888777654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=2.9e-15 Score=124.75 Aligned_cols=205 Identities=11% Similarity=-0.078 Sum_probs=175.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
-|.++.+|..++..+...|++++|++.|++++. ..|+ ..++..++..|...|++++|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 64 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALK-------------------SDPKNELAWLVRAEIYQYLKVNDKAQES 64 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------------------hCccchHHHHHHHHHHHHcCChHHHHHH
Confidence 356788999999999999999999999999984 2333 48899999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
|+++.... +.+...+..++..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..
T Consensus 65 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 65 FRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998875 45677889999999999 99999999999999832222 36788889999999999999999999988764
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+.+...+..+...+...|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 144 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 144 -PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999887642156777888888889999999999999998865
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=7.9e-15 Score=131.11 Aligned_cols=255 Identities=8% Similarity=-0.081 Sum_probs=207.3
Q ss_pred CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC-hhhHHHHHHHHHhcCCCCChhhH
Q 047873 55 THLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL-PTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 55 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
..|+. .+|..+..++.+.|++++|++.|+++.... |-+..+|..+..++...|+ +++|+..|+++++..+. +..+|
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~ 169 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVW 169 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 34555 788999999999999999999999999886 5577889999999999997 99999999999998876 88999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK- 211 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 211 (464)
..+..++...|++++|+..|+++.+.+ +.+...|..+..++...|++++|+..++++++.. +.+...|+.+..++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999875 4578889999999999999999999999999875 3478889999999999
Q ss_pred cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047873 212 ENRLDDA-----ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286 (464)
Q Consensus 212 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (464)
.|..++| ++.|++..+.... +...|..+...+...|.. ++++|+..+.++ .. .+.+...+..+..+|.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~----~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLS----KYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGG----GCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCcc----chHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence 6665777 5889888887433 677888888888887731 236888888887 33 3445678888888888
Q ss_pred hCC---------ChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHh
Q 047873 287 KEG---------DLESALDIRKEM-IKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 287 ~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 321 (464)
+.| ..++|..+++++ .+.++. ....|..+...+.
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 764 258899999888 565322 4455655555443
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.6e-15 Score=127.06 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC--CC---
Q 047873 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PD--- 274 (464)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--- 274 (464)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++ ++|...+++....... ++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEY------ETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccH------HHHHHHHHHHHHhCcccccchHH
Confidence 445566666667777777777777666655 4566666666666666655 4677666666553211 11
Q ss_pred -HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047873 275 -KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353 (464)
Q Consensus 275 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (464)
..++..+..++...|++++|...++++.+... +. ..+...|++++|...++++.... +.+...+..+..
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 147 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 46788889999999999999999999998743 42 34566788999999999998864 335667888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
.+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..++...|++++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999998863 3467889999999999999999999999998753 3468889999999999999999
Q ss_pred HHHHHHh-cCCC------CchhHHHHhhc
Q 047873 434 FDKLQSE-KGLV------SDYACYTSLVS 455 (464)
Q Consensus 434 a~~~~~~-~~~~------p~~~~~~~ll~ 455 (464)
|.+.+++ +.+. |+.......+.
T Consensus 226 A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 226 ALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 9998886 3444 66554444443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=1.3e-14 Score=124.82 Aligned_cols=249 Identities=9% Similarity=-0.072 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVFNVLMH 137 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 137 (464)
..+...+..+...|++++|+..|+++.+.. |.+...+..+...+...|++++|+..++++++....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 456677888999999999999999999886 44667899999999999999999999999998432222 234888999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
++...|++++|.+.|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864 4467889999999999999999999999998763 4466777777735555669999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHhCCC
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPD------KITYTILLDGFCKEGD 290 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~ 290 (464)
|.+.|+++.+... .+...+..+...+...++.. .+++|...+++..... ..|+ ..++..+...|...|+
T Consensus 161 A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 161 ADSSFVKVLELKP-NIYIGYLWRARANAAQDPDT---KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTC---SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcch---hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999998743 24677777888887777610 1136777777765531 1122 2467778888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047873 291 LESALDIRKEMIKRGIELDNVAFTAL 316 (464)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (464)
+++|...++++.+..+. +......+
T Consensus 237 ~~~A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 237 KVKADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-HHHHHHHh
Confidence 88888888888887543 44444444
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.5e-15 Score=125.93 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=147.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--C----hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--S----VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 133 (464)
..+..+...+...|++++|+..|++..... .+..++..++..+...|++++|...++++++..+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 566777778888888888888888887776 566777888888888888888888888877644321 1 46677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (464)
.+..++...|++++|...|++..+. .|+ ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7777788888888888888777765 233 234555666777777777766542 223455666666777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH
Q 047873 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
++++|...|+++.+... .+...+..+...+...|++ ++|...+++..... +.+...+..+..++...|++++
T Consensus 154 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSF------PEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 77777777777665532 2455555666666665554 46666666665542 2234555556666666666666
Q ss_pred HHHHHHHHHHc
Q 047873 294 ALDIRKEMIKR 304 (464)
Q Consensus 294 a~~~~~~~~~~ 304 (464)
|...++...+.
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666655544
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=5.6e-14 Score=120.83 Aligned_cols=226 Identities=14% Similarity=0.013 Sum_probs=196.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVD----LGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 79 (464)
|.++.++..++..+...|++++|++.|++++. +.+..++..+...|.. .+++++|+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~ 62 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--------------------LKENSGCFNLGVLYYQGQGVEKNLKKAA 62 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHcCCCcCCCHHHHH
Confidence 46788999999999999999999999999983 2234788889999999 99999999
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhHHHH
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----EGKIKDAQMV 151 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 151 (464)
+.|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ ++.++..+...|.. .+++++|...
T Consensus 63 ~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 63 SFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999998886 67788899999999 999999999999999875 78889999999999 9999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----ENRLDDAELLLH 223 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 223 (464)
|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|+
T Consensus 137 ~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 137 FTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 99998875 56778888888888 999999999999998764 56778889999999 999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCcccccCHHHHHHHHHHHHhCC
Q 047873 224 EMCERGLTPNDVIFTTLIDGHCK----NGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
+..+.+ +...+..+...|.. .+++ ++|...|++..+.+
T Consensus 211 ~a~~~~---~~~a~~~l~~~~~~g~~~~~~~------~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 211 KACELE---NGGGCFNLGAMQYNGEGVTRNE------KQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHTTSSSSCCS------TTHHHHHHHHHHHT
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCcccCH------HHHHHHHHHHHHcC
Confidence 999874 36677778888887 6665 59999999998865
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=1e-12 Score=125.36 Aligned_cols=427 Identities=9% Similarity=0.032 Sum_probs=290.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hhHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGF---LDDAIQ 80 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 80 (464)
|.+..+|..++..+...|.++.|..+|++++. ..+.....|...+..-.+.|+ ++.+..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~------------------~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD------------------RFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 67899999999999999999999999999995 344455899999999999999 999999
Q ss_pred HHHHHHhCCC-CCChhcHHHHHHHHHcCCCh--------hhHHHHHHHHHh-cCC-CC-ChhhHHHHHHHHHh-------
Q 047873 81 CFRLLRKHYF-RIPARGCRCLIDRMMRTNLP--------TVTLGFYLEILD-YGY-SP-SVYVFNVLMHKLCK------- 141 (464)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~------- 141 (464)
+|++...... +|+...|...+....+.+.. +...++|+.++. .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999988751 37788888877666554443 334477777664 355 44 45688877765442
Q ss_pred --cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh-------------cCChhHHHHHHHHHhhC--CC----C----
Q 047873 142 --EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-------------AKNLDEGFRLKSVMEGS--GM----R---- 196 (464)
Q Consensus 142 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~---- 196 (464)
.++++.+.++|+.........-..+|......-.. ..+++.|...+..+... ++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34577889999998853211112233222111111 12234444555443211 11 1
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047873 197 -------P-----D---VYTYSALINGLCKEN-------RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254 (464)
Q Consensus 197 -------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (464)
| + ...|...+..--..+ ..+.+..+|++..... +-....|......+...|+.+
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~--- 360 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDS--- 360 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCT---
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHH---
Confidence 1 0 123444443322222 1234567788887763 347788888888888877763
Q ss_pred CHHHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---------CC------------CHHH
Q 047873 255 DMKEAR-KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI---------EL------------DNVA 312 (464)
Q Consensus 255 ~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~ 312 (464)
+|. .+|++.... .+.+...|...+....+.|+++.|.++|+.++.... .| ...+
T Consensus 361 ---~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 361 ---TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp ---THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 786 999999875 345666777888888899999999999999886410 12 1346
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 047873 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN-GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391 (464)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (464)
|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|..++....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 8888888888999999999999998861122334454444443444 4599999999999987 4446777888899888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccc
Q 047873 392 KHGQLKNANMLLDTMLDLGVVP--DDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKS 457 (464)
Q Consensus 392 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~ 457 (464)
..|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+.++.++ ....|+......+.+.|
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 9999999999999998753222 356788888888899999999999887 34456554444444433
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=1.7e-14 Score=133.05 Aligned_cols=345 Identities=13% Similarity=0.029 Sum_probs=233.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP---TVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+...+.+.|++++|+++|++..+.+ +..++..+...+...|++ ++|..+|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998775 345566677777778888 9999999999864 5666777777566
Q ss_pred hcC-----ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 141 KEG-----KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD---EGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 141 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
..+ ++++|...|++..+.| +...+..+...|...+... ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 655 7889999999998876 3447778888887765543 4555555555444 345667788888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC----
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE---- 288 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 288 (464)
+.++++......+.+.-...++..+..+...|...|.. .+.++|+..|++....|. ++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~---~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQP---EQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSS
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---ccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCC
Confidence 86665554433333221122444778888888887721 135799999999999874 4555556677777554
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-----C
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISG-F--CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG-----D 360 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~ 360 (464)
+++++|...|+... .+ ++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 68999999999988 43 55667777666 4 56899999999999999876 6677788888887 55 9
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPE 432 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 432 (464)
+++|...|++.. . -++..+..+...|.. ..++++|...|++..+.| +......+...|.. ..+++
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999988 3 467778888887776 449999999999998765 34455566666653 45888
Q ss_pred HHHHHHHh
Q 047873 433 DFDKLQSE 440 (464)
Q Consensus 433 ~a~~~~~~ 440 (464)
+|..++++
T Consensus 376 ~A~~~~~~ 383 (452)
T 3e4b_A 376 NAYVFSQL 383 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89998886
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=1.8e-15 Score=130.43 Aligned_cols=190 Identities=10% Similarity=-0.062 Sum_probs=121.8
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 95 (464)
+...|++++|++.|++++.... ..+|+. .++..++..+...|++++|+..|+++...+ +.+..
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~ 78 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRA---------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPE 78 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSC---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred cCccchHHHHHHHHHHHHhccc---------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHH
Confidence 3456778888888888773210 011222 677777778888888888888888877765 44566
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
++..++..+...|++++|...++++++..+. +..++..+..++...|++++|...|+++.+. .|+.......+..+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 7777777777778888888877777776543 5667777777777777777777777777665 344444444444455
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
..|++++|...++...... +++...+ .++..+...++.++|...+....+
T Consensus 156 ~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 5667777777776555432 2232222 355555666666666666666544
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=2.5e-13 Score=116.78 Aligned_cols=226 Identities=12% Similarity=-0.027 Sum_probs=149.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
.++..+...|...|++++|++.|++..+.+ +..++..+...+.. .+++++|...|++..+.+ ++..+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 667777777888888888888888877733 45667777777777 788888888888877764 66677777
Q ss_pred HHHHHh----cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047873 136 MHKLCK----EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207 (464)
Q Consensus 136 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (464)
...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777 777777777777776653 55666677777776 777777777777776654 4455666666
Q ss_pred HHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047873 208 GLCK----ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283 (464)
Q Consensus 208 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (464)
.|.. .+++++|+..|++..+.+ +...+..+...|..... ..+++++|+..|++..+.+. ...+..+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~--~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEG--ATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCS--SCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 6666 677777777777766653 34555555555555100 01233566666666665432 445555556
Q ss_pred HHHh----CCChHHHHHHHHHHHHcC
Q 047873 284 GFCK----EGDLESALDIRKEMIKRG 305 (464)
Q Consensus 284 ~~~~----~~~~~~a~~~~~~~~~~~ 305 (464)
+|.. .+++++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6665 666666666666666554
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=2.4e-15 Score=129.54 Aligned_cols=224 Identities=12% Similarity=-0.066 Sum_probs=144.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCC---CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYF---RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+...|++++|+..|+++..... +.+..++..++..+...|++++|...++++++..+. +..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3455788888888888877631 123566777888888888888888888888877654 677888888888888888
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
++|.+.|++..+.. +.+..++..+...+...|++++|...++.+.+. .|+.......+..+...|++++|...+.+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888877753 335667777777888888888888888877764 344444444445556667777777777666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP---DKITYTILLDGFCKEGDLESALDIRKEMI 302 (464)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (464)
.... +++...+. +...+...++. ++|...+++........ +..++..+..++...|++++|...++++.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISE------QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCH------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCH------HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6542 22323332 44444443332 46666666654431110 12444555555555555555555555555
Q ss_pred Hc
Q 047873 303 KR 304 (464)
Q Consensus 303 ~~ 304 (464)
..
T Consensus 243 ~~ 244 (275)
T 1xnf_A 243 AN 244 (275)
T ss_dssp TT
T ss_pred hC
Confidence 54
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.3e-13 Score=114.68 Aligned_cols=205 Identities=10% Similarity=-0.071 Sum_probs=173.5
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
.|+. .++..++..+...|++++|++.|+++.... +.+...+..++..+...|++++|...++++.+..+. +..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 81 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNN 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 3444 888999999999999999999999998875 456788999999999999999999999999987654 7888999
Q ss_pred HHHHHHhc-CChhhHHHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 135 LMHKLCKE-GKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 135 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
+...+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 99999999 99999999999998732223 35678889999999999999999999988764 34578889999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
|++++|...++++.+.....+...+..+...+...|+. +.+..+++.+...
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA------QAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHh
Confidence 99999999999998864324677777777777887765 6899999888754
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=2e-14 Score=115.66 Aligned_cols=167 Identities=11% Similarity=-0.004 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.++..|..++.+|...|++++|++.|++++ ...|+. .++..++.+|.+.|++++|+..++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al-------------------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~ 63 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL-------------------KADPNNVETLLKLGKTYMDIGLPNDAIESLK 63 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 356777888888888888888888888877 334555 777788888888888888888888
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
...... +.+...+..+...+...++++.+...+.+..+..+. +..++..+..++...|++++|++.|++..+.. +.+
T Consensus 64 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~ 140 (184)
T 3vtx_A 64 KFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGF 140 (184)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chh
Confidence 777664 345566666777777777788887777777776554 66677777777777777777777777776653 335
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 566677777777777777777777776654
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.2e-14 Score=121.03 Aligned_cols=201 Identities=14% Similarity=0.047 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
....+..++..+...|++++|+..|+++.... +.+...+..++..+...|++++|...++++.+..+. +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 33667777778888888888888888887764 445667777777788888888888888887776543 6677777777
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777788888887777776653 3345566666667777777777777777666543 2345566666666667777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
|...++++.+... .+...+..+...+...|+++ +|...++++...
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~------~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENRE------KALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTT------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHH------HHHHHHHHHHcc
Confidence 7777666665432 24455555555555555553 566666655553
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1e-13 Score=117.59 Aligned_cols=207 Identities=14% Similarity=-0.042 Sum_probs=176.3
Q ss_pred CCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 54 GTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 54 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
...|+. .++..++..+...|++++|++.|+++.... +.+..++..++..+...|++++|.+.++++.+..+. +...
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 107 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARV 107 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHH
Confidence 334443 778889999999999999999999998875 456788999999999999999999999999987654 7888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (464)
+..+...+...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999998732233 45678888999999999999999999988764 346788899999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
..|++++|...++++.+.. +.+...+..+...+...|++ ++|...++++....
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~------~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR------DTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH------HHHHHHHHHHHHHC
Confidence 9999999999999998764 34677788888888888876 69999999998753
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=1.1e-14 Score=133.39 Aligned_cols=279 Identities=12% Similarity=-0.017 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-----LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~ 80 (464)
....+..++..+...|++++|+..|++++.. .|++ .++..+...|...|++++|+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 107 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-------------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQ 107 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-------------------cccChhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445566777788888888888888888742 2222 467777788888888888888
Q ss_pred HHHHHHhC----C-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCC------
Q 047873 81 CFRLLRKH----Y-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-----YSPSVYVFNVLMHKLCKEGK------ 144 (464)
Q Consensus 81 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~------ 144 (464)
.|++.... + .+....++..+...+...|++++|...++++++.. ......++..+...+...|+
T Consensus 108 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 108 YHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccccc
Confidence 88776543 1 12234556777777778888888888877766531 11124456667777777777
Q ss_pred -----------hhhHHHHHHHHhhC----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHH
Q 047873 145 -----------IKDAQMVFDEFGKR----GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPD----VYTYS 203 (464)
Q Consensus 145 -----------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 203 (464)
+++|.+.+++..+. +. .....++..+...+...|++++|...+++..+... .++ ..++.
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 77777766665332 10 11123555666666677777777776666553210 001 22455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047873 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (464)
.+..+|...|++++|...+++..+.... .+ .......++..+..
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~---------------~~---------------------~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVE---------------LG---------------------EREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHH---------------TT---------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHH---------------cC---------------------CHHHHHHHHHHHHH
Confidence 6666666677777776666665443100 00 00012334445555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 284 GFCKEGDLESALDIRKEMIKRGI-----ELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
++...|++++|...+++..+... .....++..+...+...|++++|...+++..+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55555666655555555443210 001235555666666666666666666666553
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=133.02 Aligned_cols=305 Identities=14% Similarity=0.017 Sum_probs=186.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP--GLVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
+.+...+...+..+...|++++|+..|++++.... ..+. ..++..+...|...|++++|+..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 69 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEY 69 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----------------ccHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45677888899999999999999999999985311 1111 25778889999999999999999
Q ss_pred HHHHHhC----CCC-CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC-------
Q 047873 82 FRLLRKH----YFR-IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYVFNVLMHKLCKEGK------- 144 (464)
Q Consensus 82 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~------- 144 (464)
|++.... +.+ ....++..+...+...|++++|...++++++.... ++ ..++..+...+...|+
T Consensus 70 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 70 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc
Confidence 9886543 211 12456777888888999999999998887753211 12 3467778888888888
Q ss_pred -------------hhhHHHHHHHHhhC----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHH
Q 047873 145 -------------IKDAQMVFDEFGKR----GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPD----VYT 201 (464)
Q Consensus 145 -------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~ 201 (464)
+++|...+++.... +. +....++..+...+...|++++|...+++..+... .++ ..+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 88888777765432 10 11123566677777777777777777776653210 111 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (464)
+..+..++...|++++|...+++..+.... .+ ......++..
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------~~~~~~~~~~ 272 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-------------------------------------RAVEAQSCYS 272 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-------------------------------------chHHHHHHHH
Confidence 666777777777777777777766543100 00 0001334444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHC----CC-CCCHhhHHH
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGIE-----LDNVAFTALISGFCRGGKVVEAERMLREMLKV----GL-KPDDATYTM 350 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 350 (464)
+...+...|++++|...+++..+.... ....++..+...+...|++++|...+++..+. +. .....++..
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLN 352 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 555555555555555555554432100 01334555566666666666666666655432 10 111334555
Q ss_pred HHHHHHhcCCh
Q 047873 351 VIDCFCKNGDT 361 (464)
Q Consensus 351 ll~~~~~~~~~ 361 (464)
+...+...|+.
T Consensus 353 l~~~~~~~g~~ 363 (406)
T 3sf4_A 353 LSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhHh
Confidence 55556555554
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=3.1e-11 Score=115.17 Aligned_cols=403 Identities=11% Similarity=0.019 Sum_probs=269.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC---hhhHHHHHHHHHhcCC-CCChhh
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL---PTVTLGFYLEILDYGY-SPSVYV 131 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 131 (464)
+-+...|..++..+.+.+.++.+..+|+++...- |.....|...+..-.+.++ .+.+..+|++.+...+ .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3445999999999999999999999999999885 6678889999988888898 9999999999998652 368889
Q ss_pred HHHHHHHHHhcCCh--------hhHHHHHHHHhh-CCC-CCC-cccHHHHHHHHHh---------cCChhHHHHHHHHHh
Q 047873 132 FNVLMHKLCKEGKI--------KDAQMVFDEFGK-RGL-HAT-AVSFNTLINGHCK---------AKNLDEGFRLKSVME 191 (464)
Q Consensus 132 ~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 191 (464)
|...+....+.++. +...++|+.... .|. .++ ...|...+..... .++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888777666654 234477777554 355 443 4677777765432 345678889999988
Q ss_pred hCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHC--CC----C-----------C--C------
Q 047873 192 GSGMRPDVYTYSALINGLCK-------------ENRLDDAELLLHEMCER--GL----T-----------P--N------ 233 (464)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~-----------~--~------ 233 (464)
......-..+|......-.. ..+++.|...+.++... ++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211112233221111111 12234455555443221 11 1 1 0
Q ss_pred HHHHHHHHHHHHhcCC-cccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH-HHHHHHHHcCCCCCHH
Q 047873 234 DVIFTTLIDGHCKNGR-IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL-DIRKEMIKRGIELDNV 311 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 311 (464)
...|...+..-...+. .+.......+..+|++.+... +-....|...+..+...|+.++|. .+++...... +.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHH
Confidence 1334444443322221 000001234567788887753 346778888888888899999997 9999999864 34677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCC---------CCC------------HhhHHHHHHHHHhcCChHHHHHHHHH
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKVGL---------KPD------------DATYTMVIDCFCKNGDTKTGFRLLKE 370 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~ 370 (464)
.|...+....+.|++++|..+|+++..... .|+ ..+|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888889999999999999999886310 131 23677778888888999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc--
Q 047873 371 MRSDGHLPAVETYNALMNGLCKH-GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-- 446 (464)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-- 446 (464)
+++.........|...+..-.+. ++.+.|..+|+..++. .+-+...|..++......|+.+.|+.++++ ....|+
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 99861112334444443333444 4599999999999975 444677777888888889999999999998 444452
Q ss_pred --hhHHHHhhccchhhhh
Q 047873 447 --YACYTSLVSKSSKYRQ 462 (464)
Q Consensus 447 --~~~~~~ll~~~~~~~~ 462 (464)
...|...+..-.++|+
T Consensus 539 ~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 4556666655555543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=3e-13 Score=108.70 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=150.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+..+|..+...|.+.|++++|++.|++..+.+ |-+..++..+..++.+.|++++|...+..+....+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45789999999999999999999999999886 557888999999999999999999999999987765 7888888999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
.+...++++.|...+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988764 4467788999999999999999999999998764 4467889999999999999999
Q ss_pred HHHHHHHHHHC
Q 047873 218 AELLLHEMCER 228 (464)
Q Consensus 218 a~~~~~~~~~~ 228 (464)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999886
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=4.1e-13 Score=117.48 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=186.4
Q ss_pred CCCHHHHHHHHHHHHhC----CCh----HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh---
Q 047873 4 RLTLHAYSTMVHFLVAH----KMH----SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVD--- 71 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--- 71 (464)
+.+...|...+..-..+ ++. ++|+..|++++. ..|+. .+|..++..+..
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~-------------------~~p~~~~~w~~~~~~~~~~~~ 65 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL-------------------VLGHHPDIWYEAAQYLEQSSK 65 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHH-------------------HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHH-------------------HcCCCHHHHHHHHHHHHHhch
Confidence 34567788888765544 233 678888888883 23444 889888888763
Q ss_pred ----cCCh-------hHHHHHHHHHHh-CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 047873 72 ----LGFL-------DDAIQCFRLLRK-HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY-VFNVLMHK 138 (464)
Q Consensus 72 ----~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 138 (464)
.|++ ++|+.+|++... .. |-+...|..++..+...|++++|..+|+++++..+. +.. +|..++..
T Consensus 66 ~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 143 (308)
T 2ond_A 66 LLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKF 143 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHH
T ss_pred hhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHH
Confidence 5886 999999999998 44 446678999999999999999999999999986543 444 89999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC-KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|..+|+...+.. +.+...|..++..+.+.|++++
T Consensus 144 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 221 (308)
T 2ond_A 144 ARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998864 334444543333322 3799999999999988753 3467888999999999999999
Q ss_pred HHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 218 AELLLHEMCERG-LTP--NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 218 a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
|..+|++..+.. ++| ....|..++....+.|+. +.|..+++++.+..
T Consensus 222 A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~------~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL------ASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHc
Confidence 999999999863 344 466788888888887766 69999999998753
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=3.7e-14 Score=125.83 Aligned_cols=206 Identities=14% Similarity=0.007 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP--GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+...+...+..+...|++++|+..|++++.... ..+. ..++..+...|...|++++|++.++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc----------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456777888999999999999999999985311 1111 2577888999999999999999998
Q ss_pred HHHhC----C-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC---------
Q 047873 84 LLRKH----Y-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYVFNVLMHKLCKEGK--------- 144 (464)
Q Consensus 84 ~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------- 144 (464)
+.... + .+....++..+...+...|++++|...+++.++.... ++ ..++..+...+...|+
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 86543 1 1122456778888888999999999999887653211 12 3367778888888888
Q ss_pred -----------hhhHHHHHHHHhhC----C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC----C-CCCHHHHH
Q 047873 145 -----------IKDAQMVFDEFGKR----G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG----M-RPDVYTYS 203 (464)
Q Consensus 145 -----------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~ 203 (464)
+++|.+.+++.... + ......++..+...+...|++++|...+++..+.. . .....++.
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 78887777765432 1 01113356666777777777777777777665321 0 01123566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047873 204 ALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+...+...|++++|...+++..+
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777777776654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=9.4e-13 Score=115.21 Aligned_cols=204 Identities=8% Similarity=-0.088 Sum_probs=169.5
Q ss_pred CCCHHHHHHHHHHHH-------hCCCh-------HHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLV-------AHKMH-------SQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMI 67 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~ 67 (464)
|.++..|..++..+. ..|++ ++|+..|++++ . ..|+. .+|..++.
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-------------------~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-------------------STLLKKNMLLYFAYAD 107 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-------------------TTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-------------------HHhCcccHHHHHHHHH
Confidence 678889999988876 35886 89999999998 5 56766 79999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh-cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCh
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPAR-GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC-KEGKI 145 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 145 (464)
.+.+.|++++|+++|+++.+.. +.+.. +|..++..+.+.|++++|..+|+++++..+. +...|...+.... ..|++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999864 22344 8999999999999999999999999987653 5556654444432 37999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRP--DVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
++|.++|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988763 3467888999999999999999999999999863 344 4667888999999999999999999
Q ss_pred HHHHHCC
Q 047873 223 HEMCERG 229 (464)
Q Consensus 223 ~~~~~~~ 229 (464)
+++.+..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998763
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.1e-13 Score=126.28 Aligned_cols=96 Identities=11% Similarity=-0.071 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcC----CC-CChh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYG----YS-PSVY 130 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~ 130 (464)
..+......+...|++++|+..|+++...+ +.+ ..++..+...+...|++++|...+++++... .. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 555666666667777777777777666653 222 2345555566666666666666666554321 00 0123
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 131 VFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
++..+...+...|++++|...+++..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=2.7e-13 Score=124.11 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=163.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHH
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV----YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 172 (464)
+..+...+...|++++|+..|+++++..+. +. .++..+...+...|++++|...+++..+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------- 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence 344455555666666666666666655332 22 345555555556666666666655543320
Q ss_pred HHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHh
Q 047873 173 GHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCER----G-LTPNDVIFTTLIDGHCK 246 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~ 246 (464)
...+ ......++..+...|...|++++|...+++..+. + .......+..+...|..
T Consensus 117 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 117 ------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 0000 0111233444444455555555555555444332 0 00112234444444544
Q ss_pred cCC----------ccc-ccCHHHHHHHHHHHHhC----CC-CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC
Q 047873 247 NGR----------IDM-AGDMKEARKIVDEMCTN----GL-NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE-LD 309 (464)
Q Consensus 247 ~~~----------~~~-~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 309 (464)
.|+ ++. ...+++|...+++.... +. .....++..+...+...|++++|...+++..+.... .+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 444 000 00013555555544321 11 112346778888899999999999999888764211 01
Q ss_pred ----HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC
Q 047873 310 ----NVAFTALISGFCRGGKVVEAERMLREMLKVGLK-----PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GH 376 (464)
Q Consensus 310 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 376 (464)
..++..+...+...|++++|...++++...... ....++..+...+...|++++|...+++..+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 237788888899999999999999887753210 11456778888899999999999999887764 10
Q ss_pred -CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 377 -LPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 377 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.....++..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11244677888889999999999999988875
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=1.2e-13 Score=133.29 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=151.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
-|.++.+|+.|+.+|.+.|++++|++.|++++ ...|+. .++..+..+|.+.|++++|++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl-------------------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~ 65 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL-------------------EVFPEFAAAHSNLASVLQQQGKLQEALMH 65 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46778999999999999999999999999999 456666 9999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
|++..+.+ +-+..++..+..++...|++++|++.|+++++..+. +..++..+..++...|++++|++.|++..+.. +
T Consensus 66 ~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P 142 (723)
T 4gyw_A 66 YKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-P 142 (723)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99999886 456889999999999999999999999999998765 78999999999999999999999999998874 3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 192 (464)
-+...+..+..++...|++++|.+.++++.+
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 4678899999999999999999999888753
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=7.9e-14 Score=129.47 Aligned_cols=192 Identities=13% Similarity=-0.077 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMH-SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+...|..++.+|...|++ ++|++.|++++. ..|+. .+|..+...|.+.|++++|++.|+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK-------------------LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHh-------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555555555555 555555555542 22232 455555555555555555555555
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcC---------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChh
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRT---------NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE--------GKIK 146 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 146 (464)
+..+.. |+...+..+...+... |++++|+..++++++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 554443 2234444455555555 5555555555555544432 444455555555544 5555
Q ss_pred hHHHHHHHHhhCCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 147 DAQMVFDEFGKRGLH---ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
+|.+.|++..+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|++.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544431 1 234445555555555555555555555544432 12333444444444445544444443
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=1.7e-13 Score=120.23 Aligned_cols=181 Identities=13% Similarity=0.008 Sum_probs=142.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
|+.|.+..+|..++..+...|++++|+..|++++.. ...... ...|.. .++..+...|...|++++|+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED---------LEKTSG--HDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHC--SSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHHcC--CCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 456778899999999999999999999999999831 111110 022333 78889999999999999999
Q ss_pred HHHHHHHhC------C-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCCh
Q 047873 80 QCFRLLRKH------Y-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY------GY-SPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 80 ~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~ 145 (464)
..|++.... + .+....++..+...+...|++++|...++++++. +. .....++..+...+...|++
T Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 999998764 1 1234567888999999999999999999998864 21 22456678889999999999
Q ss_pred hhHHHHHHHHhhC------C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047873 146 KDAQMVFDEFGKR------G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 146 ~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 192 (464)
++|.+.+++.... + .+....++..+...+...|++++|...++++.+
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988664 1 122345678889999999999999999998874
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-12 Score=117.90 Aligned_cols=227 Identities=6% Similarity=-0.080 Sum_probs=160.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC--C----CC
Q 047873 205 LINGLCKENRLDDAELLLHEMCER----GLTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--L----NP 273 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~----~~ 273 (464)
....+...|++++|...|++..+. +-.+ ....+..+...|...|++ +.|...+++..... . +.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~------~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT------YFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHhCccchHH
Confidence 455566677777777777776553 1111 234566666666666655 46776666665421 0 11
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHhccCChHHHHHHHHHHHHC----CC-CC
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIE-L----DNVAFTALISGFCRGGKVVEAERMLREMLKV----GL-KP 343 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~ 343 (464)
...++..+..+|...|++++|...+++.++.... . ...++..+...|...|++++|...+++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 2346788889999999999999999988754211 1 1247888999999999999999999998872 22 33
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CH
Q 047873 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPAVETYNALMNGLCKHGQ---LKNANMLLDTMLDLGVVP-DD 415 (464)
Q Consensus 344 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~ 415 (464)
...++..+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++. +..| ..
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 4567889999999999999999999988764 111123345678888888999 77777777665 2333 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 416 ITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..+..+...|...|++++|.+.+++
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5677888999999999999999886
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-12 Score=117.84 Aligned_cols=192 Identities=8% Similarity=-0.116 Sum_probs=110.5
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHH--HHHhcCChhHHH-----------HHHH
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMI--VYVDLGFLDDAI-----------QCFR 83 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~--~~~~~g~~~~A~-----------~~~~ 83 (464)
.++++++|..+++.+.+..+ .+..+. ..+..++. .....++++.+. +.++
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~---------------~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELD---------------QMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHH---------------TSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHH---------------hhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 59999999999999864321 232233 22222222 112223344444 5666
Q ss_pred HHHhCCCCCChhc------HHHHHHHHHcCCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChhhHHHHH
Q 047873 84 LLRKHYFRIPARG------CRCLIDRMMRTNLPTVTLGFYLEILDY----GYSP-SVYVFNVLMHKLCKEGKIKDAQMVF 152 (464)
Q Consensus 84 ~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (464)
.+.... .+... +...+..+...|++++|...++++++. +..+ ...++..+..++...|+++.|...+
T Consensus 89 ~i~~~~--~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 89 EIDKKQ--ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHHHT--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcC--CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 654432 11111 222556677788888888888887763 1111 2356677777888888888888877
Q ss_pred HHHhhCC--C----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 153 DEFGKRG--L----HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMR-PDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 153 ~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
++..+.. . +....+++.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|++.
T Consensus 167 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7765431 0 001235566666777777777777777665532 100 0123556666677777777777777
Q ss_pred HHHHHH
Q 047873 222 LHEMCE 227 (464)
Q Consensus 222 ~~~~~~ 227 (464)
+++..+
T Consensus 247 ~~~al~ 252 (383)
T 3ulq_A 247 FKRAIA 252 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=3e-13 Score=119.94 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=171.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhc----CCC-CChhh
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDY----GYS-PSVYV 131 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 131 (464)
.+......+...|++++|+..|+++.... +.+ ...+..+...+...|++++|...++++++. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556778889999999999999998874 223 356778888999999999999999887643 111 12556
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCC----cccHHHHHHHHHhcCC--------------------hhHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGL-HAT----AVSFNTLINGHCKAKN--------------------LDEGFRL 186 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 186 (464)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77888889999999999999888754310 011 2367778888888888 8888888
Q ss_pred HHHHhhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcccccCHHHHH
Q 047873 187 KSVMEGS----GM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260 (464)
Q Consensus 187 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~ 260 (464)
++..... +. .....++..+...+...|++++|...+++..+.... ++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------- 219 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------
Confidence 8776432 11 112345677778888888888888888877643100 000
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047873 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE-----LDNVAFTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
.....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|...+++
T Consensus 220 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 220 -----------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 001223344444444555555555555444332100 0133455555566666666666666665
Q ss_pred HHHCC----C-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 336 MLKVG----L-KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 336 ~~~~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.... . .....++..+...|...|++++|...+++..+.
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 54321 0 011234556666666667777777776666653
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.7e-13 Score=120.20 Aligned_cols=169 Identities=18% Similarity=0.046 Sum_probs=137.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc------CC-
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH-------YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY------GY- 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 125 (464)
.++..+...+...|++++|+.+|+++... ..+....++..+...+...|++++|...++++++. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88899999999999999999999998773 22344667888999999999999999999998864 21
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC------CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC-----
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR------GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----- 193 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 193 (464)
.....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...++.+.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 224667888999999999999999999988654 11 223456788899999999999999999988754
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 194 -GMRP-DVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 194 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+..| ...++..+..++...|++++|.+.++++.+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122 3456888999999999999999999998763
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=6.9e-13 Score=123.13 Aligned_cols=199 Identities=10% Similarity=-0.157 Sum_probs=169.0
Q ss_pred CCCCCh-hhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFL-DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
...|+. ..+..+...|...|++ ++|++.|++..+.. +.+..++..+...+...|++++|...|+++++.. |+...
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 172 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVS 172 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHH
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHH
Confidence 444544 8999999999999999 99999999999886 4568899999999999999999999999999876 55788
Q ss_pred HHHHHHHHHhc---------CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc--------CChhHHHHHHHHHhhCC
Q 047873 132 FNVLMHKLCKE---------GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA--------KNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 132 ~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~ 194 (464)
+..+..++... |++++|.+.|++..+.. +.+...|..+..+|... |++++|...|++..+..
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence 99999999999 99999999999998874 44678899999999998 99999999999998763
Q ss_pred CC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Q 047873 195 MR---PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264 (464)
Q Consensus 195 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 264 (464)
+ .+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++ ++|+..+.
T Consensus 252 -p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~------~eAi~~~~ 316 (474)
T 4abn_A 252 -RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRL------TSLLESKG 316 (474)
T ss_dssp -GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH------HHHHHHTT
T ss_pred -CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH------HHHHHHhc
Confidence 2 47888999999999999999999999999887432 566777777777776655 46665443
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=1.5e-12 Score=125.67 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=151.2
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
+..|+. .+++.+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|+..|+++++..+. +..+|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 456776 999999999999999999999999999886 456789999999999999999999999999998765 78999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
..+..++...|++++|.+.|++..+.+ +-+...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhc
Confidence 999999999999999999999998874 4467889999999999999999999999998764 33678899999999999
Q ss_pred CChhHHHHHHHHHHH
Q 047873 213 NRLDDAELLLHEMCE 227 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~ 227 (464)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=2.1e-12 Score=103.63 Aligned_cols=164 Identities=12% Similarity=-0.054 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..++..+...|++++|+..|+++.... +.+...+..++..+...|++++|...++++.+..+. +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34444445555555555555555544432 223444455555555555555555555555544322 4455555555555
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
..|++++|.+.++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5556666655555555442 2344455555555666666666666666555442 2345556666666666666666666
Q ss_pred HHHHHHHC
Q 047873 221 LLHEMCER 228 (464)
Q Consensus 221 ~~~~~~~~ 228 (464)
.++.+.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66665543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=7.6e-12 Score=100.38 Aligned_cols=153 Identities=11% Similarity=-0.047 Sum_probs=111.8
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..+..++..+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566677777788888888888877765443 66777777778888888888888888776653 34566777777778
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
...|++++|.+.++.+.... +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 88888888888888776653 3456677777778888888888888888877664 235667777777777777765
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1.1e-11 Score=103.16 Aligned_cols=197 Identities=8% Similarity=-0.067 Sum_probs=154.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+.++..|..++..+...|++++|++.|++++.. ..+++..++..+...+...|++++|++.|+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 66 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-----------------TNNQDSVTAYNCGVCADNIKKYKEAADYFD 66 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 456789999999999999999999999999853 111455777779999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV-------YVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
+..... |.+..++..+..++...|++++|+..++++++..+. +. ..|..+...+...|++++|.+.|++..
T Consensus 67 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 67 IAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 999886 446778999999999999999999999999987654 55 557888889999999999999999998
Q ss_pred hCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 157 KRGLHAT---AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 157 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+. .|+ ...+..+..+|...| ...++.+...+ ..+...|.... ....+.+++|+..|++..+..
T Consensus 145 ~~--~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 145 DV--TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp TS--SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hc--CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 76 343 456777777775544 34455555543 22344444333 334567899999999998874
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=4.2e-11 Score=99.72 Aligned_cols=153 Identities=7% Similarity=-0.149 Sum_probs=129.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+...+...+..+...|++++|++.|++......+++...+..+..++...|++++|+..+++.++..+. +..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 447888899999999999999999999998874367778888999999999999999999999987765 7888999999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCc-------ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATA-------VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD---VYTYSALIN 207 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 207 (464)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999998763 2344 45778888899999999999999999876 444 567777888
Q ss_pred HHHhcCC
Q 047873 208 GLCKENR 214 (464)
Q Consensus 208 ~~~~~~~ 214 (464)
+|...|+
T Consensus 162 ~~~~~~~ 168 (228)
T 4i17_A 162 LFYNNGA 168 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=6.7e-11 Score=106.75 Aligned_cols=227 Identities=8% Similarity=-0.029 Sum_probs=163.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC---C--CC
Q 047873 204 ALINGLCKENRLDDAELLLHEMCERGL-TP----NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG---L--NP 273 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~--~~ 273 (464)
.....+...|++++|+..|++..+... .+ ....+..+...|...|++ +.|...+++..... . .+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~------~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT------HVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHHhCCCchh
Confidence 345556677888888888887765410 11 234566677777777765 47777777765421 0 11
Q ss_pred -CHHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH-----CCCC
Q 047873 274 -DKITYTILLDGFCKEGDLESALDIRKEMIKR----GIE-LDNVAFTALISGFCRGGKVVEAERMLREMLK-----VGLK 342 (464)
Q Consensus 274 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~ 342 (464)
...++..+..+|...|++++|...+++.++. +.. ....++..+...|...|++++|...+++... .. +
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~ 258 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-D 258 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-G
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-h
Confidence 2456788899999999999999999988763 111 1235678888999999999999999999887 43 3
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-C
Q 047873 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG----HLPAVETYNALMNGLCKHGQ---LKNANMLLDTMLDLGVVP-D 414 (464)
Q Consensus 343 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~ 414 (464)
....++..+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +.+|+..+++. +..| .
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHH
Confidence 336778889999999999999999999988751 12223456666677777888 77777777663 2223 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 415 DITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
...+..+...|...|++++|.+.+++
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45667788999999999999999876
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.2e-10 Score=105.06 Aligned_cols=241 Identities=10% Similarity=-0.080 Sum_probs=131.8
Q ss_pred CCChhhHHHHHHHH--HhcCChhHHHHHHHHHHhCC--CCCChh--cHHHHHHH--HHcCCChhhHH---------HHHH
Q 047873 56 HLPGLVLDALMIVY--VDLGFLDDAIQCFRLLRKHY--FRIPAR--GCRCLIDR--MMRTNLPTVTL---------GFYL 118 (464)
Q Consensus 56 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~ 118 (464)
-|...+-..|-..| .+.+++++|.++++++.... ...+.. .|..++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34445555666666 78999999999999886542 112222 22333321 11112222222 5555
Q ss_pred HHHhcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CC----CcccHHHHHHHHHhcCChhHHHHHHHH
Q 047873 119 EILDYGYSPSV----YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL-HA----TAVSFNTLINGHCKAKNLDEGFRLKSV 189 (464)
Q Consensus 119 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 189 (464)
.+.......+. ..+......+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1223345566788999999999988765411 11 234677788888889999999888887
Q ss_pred HhhC----CC-C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCcccccCHHH
Q 047873 190 MEGS----GM-R-PDVYTYSALINGLCKENRLDDAELLLHEMCER----GLT-PNDVIFTTLIDGHCKNGRIDMAGDMKE 258 (464)
Q Consensus 190 ~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (464)
..+. +. . ....+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++ ++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~------~~ 240 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD------QM 240 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH------HH
Confidence 6642 11 1 12456778888888999999999888887653 100 0122344444445544443 35
Q ss_pred HHHHHHHHHh-----CCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 259 ARKIVDEMCT-----NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303 (464)
Q Consensus 259 a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (464)
|...+++... ..+ ....++..+..++.+.|++++|...+++..+
T Consensus 241 A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555443 211 1133344444444444555555544444443
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=2e-10 Score=103.49 Aligned_cols=272 Identities=13% Similarity=0.010 Sum_probs=173.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhh
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA----RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYV 131 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 131 (464)
+.......+...|++++|+..+++........+. .++..+...+...|++++|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445566778899999999999998876422222 14566677888899999999999988763211 12 233
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhC----CCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CCHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKR----GLH--A-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR----PDVY 200 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 200 (464)
+..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566788899999999999999887653 211 1 2345666788899999999999999987653211 1235
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPN-DVIFT-----TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (464)
++..+...+...|++++|...+++.......++ ...+. .....+...|++ ++|...+++.......+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK------AAAANWLRHTAKPEFANN 249 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH------HHHHHHHHhCCCCCCCcc
Confidence 677888899999999999999998875411111 11121 122335565554 578888777655332111
Q ss_pred ---HHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 275 ---KITYTILLDGFCKEGDLESALDIRKEMIKR----GIELDN-VAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 275 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
...+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123455566666677777777666665432 111111 1344444555555666666655555543
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=2.4e-10 Score=102.98 Aligned_cols=267 Identities=13% Similarity=0.046 Sum_probs=176.2
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHHHHH
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATA----VSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPD----VYTYSALI 206 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~ 206 (464)
...+...|++++|...+++........+. .+++.+...+...|++++|...+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33455566666666666665543211111 1344555566667777777777766543210 111 23356677
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC--C--CH
Q 047873 207 NGLCKENRLDDAELLLHEMCER----GLT--P-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--P--DK 275 (464)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~ 275 (464)
..+...|++++|...+++..+. +.. | ....+..+...+...|++ ++|...+++....... + ..
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL------DEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHhhccCcHHHH
Confidence 8888999999999999887653 211 2 234556677788887776 6999999988764321 1 23
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHhccCChHHHHHHHHHHHHCCCCCC---Hh
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELD--NVAFT----ALISGFCRGGKVVEAERMLREMLKVGLKPD---DA 346 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ 346 (464)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788889999999999999998876422211 11111 233447789999999999998876432111 22
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPAV-ETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788899999999999999987653 222222 3667778889999999999999988764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=4.1e-12 Score=109.57 Aligned_cols=165 Identities=13% Similarity=-0.018 Sum_probs=128.0
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH------Y 89 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 89 (464)
....|++++|+..|++++. ++..+.. ...|+. .++..+...|...|++++|+..|+++... +
T Consensus 11 ~~~~~~~~~A~~~~~~al~---------~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALE---------DLEKTSG--HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79 (283)
T ss_dssp --CCSCSSSHHHHHHHHHH---------HHHHHHC--SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCCCCHHHHHHHHHHHHH---------HHHHhcC--CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence 3457999999999999883 3333332 122333 88999999999999999999999998754 1
Q ss_pred -CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-----C--CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC---
Q 047873 90 -FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-----Y--SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR--- 158 (464)
Q Consensus 90 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 158 (464)
.+....++..+...+...|++++|...++++++.. . +....++..+...+...|++++|...+++..+.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12335678889999999999999999999988651 1 224667888999999999999999999988764
Q ss_pred ---C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047873 159 ---G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 159 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 192 (464)
+ .+....++..+...+...|++++|...+++..+
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122356788899999999999999999988764
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=3.5e-11 Score=98.47 Aligned_cols=165 Identities=8% Similarity=-0.012 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHH----------------HHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDA----------------LMIV 68 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------l~~~ 68 (464)
++..+-..+..+...|++++|+..|++++. ..|+. .++.. +...
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA-------------------LNIDRTEMYYWTNVDKNSEISSKLATELALA 63 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHH
Confidence 566777788889999999999999999984 34444 44444 6666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--hh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK--IK 146 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 146 (464)
|.+.|++++|+..|++..+.+ |-+..++..+..++...|++++|+..|+++++..+. +..++..+..++...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 666666666666666666654 334556666666666666666666666666665543 55556555555544432 22
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
.+...+...... .|....+.....++...|++++|...|++..+.
T Consensus 142 ~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 142 KLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333333333211 111112222333444455555555555555543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=1.1e-10 Score=101.00 Aligned_cols=205 Identities=10% Similarity=-0.002 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..|...+.+|...|++++|++.|++++.- ....+.+++. .+++.+..+|...|++++|+..|++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~-------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADY-------------QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36777788899999999999999988731 1111222232 788999999999999999999999886
Q ss_pred hCCCC---C--ChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 87 KHYFR---I--PARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSP-S----VYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 87 ~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
..... + ...++..+...+... |++++|+..|++.++..+.. + ..++..+...+...|++++|...|++.
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 54211 1 135678888999996 99999999999988743221 1 356788899999999999999999999
Q ss_pred hhCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH--hcCChhHHHHH
Q 047873 156 GKRGLHATAV------SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV------YTYSALINGLC--KENRLDDAELL 221 (464)
Q Consensus 156 ~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~ 221 (464)
.......... .+..+..++...|++++|...|++..+. .|+. ..+..++..+. ..+++++|++.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8764222211 4667788889999999999999998764 2331 12344555554 35667888888
Q ss_pred HHHHHH
Q 047873 222 LHEMCE 227 (464)
Q Consensus 222 ~~~~~~ 227 (464)
|+.+..
T Consensus 263 ~~~~~~ 268 (292)
T 1qqe_A 263 FDNFMR 268 (292)
T ss_dssp HTTSSC
T ss_pred hccCCc
Confidence 876654
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=1.4e-11 Score=106.26 Aligned_cols=233 Identities=15% Similarity=0.020 Sum_probs=153.8
Q ss_pred HhcCChhHHHHHHHHHHhC-------CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc------CC-CCChhhHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKH-------YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY------GY-SPSVYVFNVL 135 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 135 (464)
...|++++|+..|++..+. +.+....++..+...+...|++++|...++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776542 22334677889999999999999999999998864 21 2245678889
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC------C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCC-CHHH
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR------G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS------GMRP-DVYT 201 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 201 (464)
..++...|++++|.+.+++.... . .+....++..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988654 1 1223567888999999999999999999988754 1122 3567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCER-------GLTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
+..+..++...|++++|...++++.+. ...+ ....+..+...+...+.......+..+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998764 1112 2233333444444434333223333333333322111 111
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEMIK 303 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (464)
...++..+..+|...|++++|...+++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234566677777777777777777776654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.32 E-value=8.2e-12 Score=96.17 Aligned_cols=146 Identities=7% Similarity=-0.092 Sum_probs=103.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
.|+..+...|++++|++.+++++ ...|+. ..+..+...|.+.|++++|++.|++..+..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~-------------------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~- 61 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST-------------------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ- 61 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS-------------------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HhHHHHHHcChHHHHHHHHHHhc-------------------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 35566677788888888888876 445555 677778888888888888888888888775
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH-HHHHhhCCCCCCcccHHH
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV-FDEFGKRGLHATAVSFNT 169 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ 169 (464)
|-+..+|..+..++...|++++|+..|+++++..+. ++.++..+..++.+.|++++|.+. +++..+.. +.++.+|..
T Consensus 62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l 139 (150)
T 4ga2_A 62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKL 139 (150)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 446778888888888888888888888888887655 677788888888888888766554 46666553 335556666
Q ss_pred HHHHHHhcCC
Q 047873 170 LINGHCKAKN 179 (464)
Q Consensus 170 l~~~~~~~~~ 179 (464)
....+...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 6666655553
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=6.2e-11 Score=100.96 Aligned_cols=187 Identities=6% Similarity=-0.141 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP----GLVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 79 (464)
+.++..+..++..+...|++++|++.|++++.. .|+ ..++..++.+|.+.|++++|+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~a~~~lg~~~~~~~~~~~A~ 72 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-------------------GRTHEWAADAQFYLARAYYQNKEYLLAA 72 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-------------------CSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------CCCCcchHHHHHHHHHHHHHhCcHHHHH
Confidence 456677777788888888888888888888742 222 366777778888888888888
Q ss_pred HHHHHHHhCCCC--CChhcHHHHHHHHHc--------CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 80 QCFRLLRKHYFR--IPARGCRCLIDRMMR--------TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
..|+++....+. ....++..+..++.. .|++++|+..|+++++..+. +......+.......
T Consensus 73 ~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~------- 144 (261)
T 3qky_A 73 SEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELR------- 144 (261)
T ss_dssp HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHH-------
Confidence 888887776321 123456666777777 78888888888887776543 333332211000000
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhc----------CChhH
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP--DVYTYSALINGLCKE----------NRLDD 217 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~ 217 (464)
... ...+..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++
T Consensus 145 ---~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 145 ---AKL--------ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp ---HHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 000 0112344555556666666666666655431110 123444555555544 55666
Q ss_pred HHHHHHHHHHC
Q 047873 218 AELLLHEMCER 228 (464)
Q Consensus 218 a~~~~~~~~~~ 228 (464)
|...|+++.+.
T Consensus 214 A~~~~~~~~~~ 224 (261)
T 3qky_A 214 AVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=7e-11 Score=114.70 Aligned_cols=180 Identities=10% Similarity=-0.052 Sum_probs=146.6
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
...|++++|++.|++++.. .+ . ......|+. .++..+...|.+.|++++|++.|+++.+.+ +.+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~-~~-------~---~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a 469 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHG-AL-------D---ADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRL 469 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHH
T ss_pred ccccCHHHHHHHHHHhhhh-cc-------c---ccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHH
Confidence 6799999999999998710 00 0 000233444 899999999999999999999999999875 557788
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
+..+..++...|++++|+..|+++++..+. +...+..+..++...|++++ .+.|++..+.+ +.+...|..+..++.+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 470 VWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHH
Confidence 999999999999999999999999998765 78889999999999999999 99999998874 4467789999999999
Q ss_pred cCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 047873 177 AKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENR 214 (464)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 214 (464)
.|++++|.+.|++..+. .|+ ...+..+..++...++
T Consensus 547 ~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred cCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999999999998876 344 5667777777766554
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=1.8e-10 Score=86.81 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
.+|..++..+...|++++|++.|++++.. .+.+..++..++..+...|++++|+..|+++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc------------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46777888888888888888888887732 122336777778888888888888888888776
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+ +.+...+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|...++++...
T Consensus 64 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 64 LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 64 345566777777777888888888888877776543 5666777777777777777777777776654
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=1.3e-10 Score=100.32 Aligned_cols=163 Identities=9% Similarity=-0.088 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY-VFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 138 (464)
..+..+...+.+.|++++|+..|++..... |-+..++..+...+...|++++|...++++....+ +.. ........
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHHH
Confidence 445555555566666666666666655554 33445555556666666666666666665554432 222 12222223
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-PDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 217 (464)
+...++.+.|...+++..... +.+...+..+...+...|++++|...|+++.+.... .+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 445555555666665555542 334455555666666666666666666665544211 114455566666666666666
Q ss_pred HHHHHHHHH
Q 047873 218 AELLLHEMC 226 (464)
Q Consensus 218 a~~~~~~~~ 226 (464)
|...|++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=8.6e-10 Score=91.43 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+...+..++..+...|++++|+..|++++.... ..|. ..++..++.+|.+.|++++|+..|+
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p----------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 65 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYP----------------FGPYSQQVQLDLIYAYYKNADLPLAQAAID 65 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3567788889999999999999999999985311 1122 2678889999999999999999999
Q ss_pred HHHhCCCCCCh---hcHHHHHHHHHc------------------CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 84 LLRKHYFRIPA---RGCRCLIDRMMR------------------TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 84 ~~~~~~~~~~~---~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
++.+..+. +. .++..+..++.. .|++++|+..|+++++..+. +..++.......
T Consensus 66 ~~l~~~P~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 66 RFIRLNPT-HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHCTT-CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH---
T ss_pred HHHHHCcC-CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH---
Confidence 99887522 22 245555555543 45667777777777665433 333322211100
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 218 (464)
.+...+. .....+...|.+.|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|
T Consensus 141 -------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 -------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp -------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0000000 01134567788899999999999998875 233 24677888999999999999
Q ss_pred HHHHHHHHHCC
Q 047873 219 ELLLHEMCERG 229 (464)
Q Consensus 219 ~~~~~~~~~~~ 229 (464)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 99999888764
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.25 E-value=5.6e-11 Score=94.41 Aligned_cols=163 Identities=11% Similarity=-0.040 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...+..++..+...|++++|+..|++++. ..|+. .++..+..++.+.|++++|+..|+++
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSD-------------------ELQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCH-------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34455666777777777777777777662 23444 67777777777777777777777776
Q ss_pred HhCCCCCChhcHHHHHHH-HHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC-C
Q 047873 86 RKHYFRIPARGCRCLIDR-MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-T 163 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 163 (464)
.... | +...+...... +...+....|+..+++.++..+. +...+..+..++...|++++|...|+++.+....+ +
T Consensus 67 ~~~~-p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 67 PLEY-Q-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp CGGG-C-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hhcc-C-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 6553 2 33322222111 11222333456666666665543 56666666666666777777777766666553111 2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
...+..+...+...|+.++|...|++..
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3355666666666666666666665543
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=9.6e-10 Score=95.13 Aligned_cols=169 Identities=10% Similarity=-0.060 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHhcc-CChHHHHHHHHHHHHCCCCC-C----H
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIE---L--DNVAFTALISGFCRG-GKVVEAERMLREMLKVGLKP-D----D 345 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 345 (464)
+|..+..+|...|++++|+..+++.++.... + -..++..+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4455555555556666665555555432110 0 123566666677774 77777777777766531000 1 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI--- 416 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--- 416 (464)
.++..+...+.+.|++++|+..|+++.+....... ..|..+..++...|++++|...+++..+. .|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 45667777777778888888877777775222111 14566677777778888888888777642 33211
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHh-cCCCCch
Q 047873 417 ---TYNILLEGHC--KHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 417 ---~~~~l~~~~~--~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
.+..++.+|. ..+++++|.+.+++ ..+.|..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2344455554 34566777777665 4455543
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.22 E-value=4.8e-10 Score=91.63 Aligned_cols=173 Identities=14% Similarity=-0.011 Sum_probs=132.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHH----------------HHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC----------------LIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.+...+..+...|++++|+..|++....+ |-+...+.. +..++.+.|++++|+..|++.++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33445566789999999999999998875 335666777 8999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHHHH
Q 047873 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN--LDEGFRLKSVMEGSGMRPDVYTY 202 (464)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 202 (464)
+. +...+..+..++...|++++|...|++..+.+ +.+..++..+..+|...|. ...+...++.... ..|....+
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 65 88999999999999999999999999998874 4467788888888766553 4445555655542 12333344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
.....++...|++++|+..|++..+. .|+......+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 55666777889999999999999976 5665444433
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.21 E-value=1.6e-08 Score=93.79 Aligned_cols=201 Identities=10% Similarity=0.046 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+.+..+|+++.... +.+...|...+..+.+.|+. +.|..++++.... +.+...+. .|....+.++.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~------~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~- 261 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK------EKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV- 261 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH-
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH-
Confidence 34566777777643 33566677666666666554 5888888888776 22322222 12221111221
Q ss_pred HHHHHHHHcC------------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CChH
Q 047873 296 DIRKEMIKRG------------IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN-GDTK 362 (464)
Q Consensus 296 ~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~ 362 (464)
++.+.+.- .......|...+....+.++.+.|..+|+++ ... +.+...|...+..-... ++.+
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChH
Confidence 22222210 0011245666677776778889999999888 321 23444444333322223 3688
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.|..+|+...+. .+-++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.+++++
T Consensus 338 ~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 338 TPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999988875 22245566777777788899999999998862 2567777777777778888888777665
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=2.2e-10 Score=111.21 Aligned_cols=174 Identities=10% Similarity=-0.093 Sum_probs=145.7
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 70 VDLGFLDDAIQCFRLLR--------KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
...|++++|++.|++.. ... +.+...+..+...+...|++++|+..|+++++..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999998 543 456778899999999999999999999999987765 88899999999999
Q ss_pred cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
.|++++|.+.|++..+.+ +.+...+..+..++.+.|++++ .+.|++..+.. +.+...+..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998874 4467888999999999999999 99999998764 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047873 222 LHEMCERGLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (464)
|+++.+.+.. +...+..+..++...+.
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9998876321 35566667777666554
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=1.4e-09 Score=92.51 Aligned_cols=168 Identities=10% Similarity=-0.024 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-C-ChhhHH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-P-SVYVFN 133 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~ 133 (464)
...+..++..+.+.|++++|+..|+++.... |.+ ..++..++.++.+.|++++|+..|+++++..+. | ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3778888889999999999999999998875 333 567888999999999999999999999987543 1 245677
Q ss_pred HHHHHHHh--------cCChhhHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 134 VLMHKLCK--------EGKIKDAQMVFDEFGKRGLHATA-VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 134 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
.+..++.. .|++++|...|+++.+.. |+. .....+.. +..+.. .....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHH----HHHHHHHH
Confidence 78888888 899999999999988763 332 22222211 111110 01122566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTP--NDVIFTTLIDGHCKN 247 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 247 (464)
+..+|.+.|++++|+..|+.+.+..+.. ....+..+..+|...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 8889999999999999999998864321 244666777777755
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=1.7e-08 Score=86.54 Aligned_cols=230 Identities=10% Similarity=-0.009 Sum_probs=181.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG--FLDDAIQCFRLLRK 87 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 87 (464)
+.+..........++|++++.+++ .+.|+. .+|+.-...+...| +++++++.++.+..
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L-------------------~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~ 97 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGI-------------------NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL 97 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH-------------------HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 333333344444578999999998 567777 99999999999999 99999999999998
Q ss_pred CCCCCChhcHHHHHHHH----HcC---CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh--hHHHHHHHHhhC
Q 047873 88 HYFRIPARGCRCLIDRM----MRT---NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK--DAQMVFDEFGKR 158 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~ 158 (464)
.. |-+..+|+.-...+ ... +++++++.+++++++..+. +..+|+.-..++...|.++ ++++.++++.+.
T Consensus 98 ~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 98 DN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 86 44566676655555 455 7899999999999998776 8999998888899999998 999999999987
Q ss_pred CCCCCcccHHHHHHHHHhcCC------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--
Q 047873 159 GLHATAVSFNTLINGHCKAKN------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD-AELLLHEMCERG-- 229 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~-- 229 (464)
+ +.|...|+.....+...+. ++++++.++.++... +-|...|+.+...+.+.|+... +..+..++.+.+
T Consensus 176 d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 176 D-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred C-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 6 4577888877777777776 889999999888765 4588889988888888888544 556777665532
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
-..+...+..+..++.+.|+. ++|.++++.+...
T Consensus 254 ~~~s~~al~~la~~~~~~~~~------~~A~~~~~~l~~~ 287 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKY------NESRTVYDLLKSK 287 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHccCCH------HHHHHHHHHHHhc
Confidence 133678888899999887665 6999999999863
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=6.8e-09 Score=88.08 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI-ELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444332 22333334455555555555555555555544432 11344455555555555555555555555544
Q ss_pred CCCCC-----CHhhHHHHHHHH--HhcC--ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 339 VGLKP-----DDATYTMVIDCF--CKNG--DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 339 ~~~~~-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 23 133333333331 1122 455555555555443 2332222223335555555555555555443
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.19 E-value=2.4e-08 Score=85.59 Aligned_cols=224 Identities=6% Similarity=-0.065 Sum_probs=156.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC--ChhhHHHHHHHHHhcCCCCChhhHHHHHHHH----Hhc-
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN--LPTVTLGFYLEILDYGYSPSVYVFNVLMHKL----CKE- 142 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 142 (464)
.+....++|++.++.+...+ |-...+|+.-...+...+ ++++++..++.++...+. +..+|+.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444568999999988876 445677888888888888 899999999999887766 777777655555 555
Q ss_pred --CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----
Q 047873 143 --GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD--EGFRLKSVMEGSGMRPDVYTYSALINGLCKENR---- 214 (464)
Q Consensus 143 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 214 (464)
+++++++.+++.+.+.. +.+..+|+...-.+.+.|.++ ++++.++.+.+.. .-|..+|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 67888888888888764 457777877777777778877 8888888888765 3467777766666666665
Q ss_pred --hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhCCC
Q 047873 215 --LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--LNPDKITYTILLDGFCKEGD 290 (464)
Q Consensus 215 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 290 (464)
++++++.++++....+. |...|+.+-..+.+.|+.. +.+.....+....+ -..+...+..+..++.+.|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSI-----TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCG-----GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 67777777777766433 6777777777776666542 33444554443321 12345566666667777777
Q ss_pred hHHHHHHHHHHHH
Q 047873 291 LESALDIRKEMIK 303 (464)
Q Consensus 291 ~~~a~~~~~~~~~ 303 (464)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777665
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=1e-09 Score=82.49 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
++..++..+...|++++|+.+|+++...+ +.+...+..++..+...|++++|...++++.+.++. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 35556666666777777777777666553 334455555666666666666666666666655432 4455555555666
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
..|++++|.+.++.+.... +.+...+..+...+...|++++|...++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 6666666666666555442 2233444445555555555555555555544
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=4.8e-10 Score=88.96 Aligned_cols=164 Identities=8% Similarity=-0.081 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK- 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 138 (464)
..+..+...+.+.|++++|+..|++..+.. |.+...+..+...+...|++++|+..++++.+..+ ++..+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 566778888999999999999999988765 55678899999999999999999999999887654 44443333222
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 217 (464)
+...+....|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 223334455788898887763 3457888999999999999999999999998774322 35678889999999999999
Q ss_pred HHHHHHHHHH
Q 047873 218 AELLLHEMCE 227 (464)
Q Consensus 218 a~~~~~~~~~ 227 (464)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=1.9e-10 Score=88.51 Aligned_cols=146 Identities=8% Similarity=-0.105 Sum_probs=105.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
|..++...|++++|+..++...... +-+...+..+...|.+.|++++|++.|+++++..+. ++.+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 4556677788889988888876653 334556677888888889999999999888887765 78888888888888888
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
+++|...|++..+.+ +-+..++..+...|.+.|++++|... +++..+.. +-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888887763 33567778888888888888765554 56666543 3355666666666666554
No 107
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=2.6e-08 Score=84.56 Aligned_cols=243 Identities=10% Similarity=0.035 Sum_probs=162.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
.-.|++..++.-..++ ....+......+.+++...|++... ....|....+..+.. |...+ |.
T Consensus 24 fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HH
Confidence 3479999998844432 2122233444456788888888752 122233334443333 33322 78
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888887664 45666667888999999999999999999876653 236677888999999999999999999999876
Q ss_pred CCCC-----CHHHHHHHHHHHHh--cCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 047873 229 GLTP-----NDVIFTTLIDGHCK--NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 229 ~~~~-----~~~~~~~l~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
.| +..+...+..++.. .|. ++.++|..+|+++... .|+..+-..++.++.+.|++++|...++.+
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~----~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNK----ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTC----STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44 24555556655322 230 1236999999998765 344223334444788899999999999876
Q ss_pred HHcC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 047873 302 IKRG---------IELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340 (464)
Q Consensus 302 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (464)
.+.. -+-++.++..++......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6531 02256667566666666676 7888888888864
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.15 E-value=3.5e-10 Score=83.90 Aligned_cols=108 Identities=7% Similarity=-0.110 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..+|.-.+..|.+.|++++|++.|++++. ..|+. .+|..+..+|.+.|++++|++.|++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK-------------------RDPENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 45566666667777777777777776662 23333 66666666677777777777777766
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
.+.+ +.+..+|..++.++...|++++|++.|+++++..+. +..++..+
T Consensus 74 l~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 74 IRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 6654 345566666666666667777777766666665543 44444433
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=6e-09 Score=86.28 Aligned_cols=172 Identities=8% Similarity=-0.104 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh---hHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI--PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY---VFNV 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 134 (464)
..+..++..+.+.|++++|+..|+++....+.. ...++..++.++.+.|++++|+..|+++++..+. +.. ++..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHH
Confidence 456667778899999999999999998864221 1357888899999999999999999999987654 322 4444
Q ss_pred HHHHHHh------------------cCChhhHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 047873 135 LMHKLCK------------------EGKIKDAQMVFDEFGKRGLHATA-VSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195 (464)
Q Consensus 135 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 195 (464)
+..++.. .|++++|...|+++.+.. |+. ..+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH-----
Confidence 5555544 456666777776666552 222 2221111100 000000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCccc
Q 047873 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--DVIFTTLIDGHCKNGRIDM 252 (464)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 252 (464)
......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+++.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 01123567889999999999999999998732211 2567888999999999874
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=7.5e-10 Score=105.63 Aligned_cols=153 Identities=10% Similarity=-0.084 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHH
Q 047873 20 HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98 (464)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 98 (464)
.|++++|++.|++++ ...|+. .++..+...|.+.|++++|++.|++..+.. +.+...+.
T Consensus 2 ~g~~~~A~~~~~~al-------------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAV-------------------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVA 61 (568)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHH
T ss_pred CccHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 588999999999988 445655 899999999999999999999999999886 55678899
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA- 177 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 177 (464)
.+...+...|++++|.+.+++.++..+. +...+..+..++...|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988765 78899999999999999999999999998774 34577888899999999
Q ss_pred --CChhHHHHHHHHHhhCC
Q 047873 178 --KNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 178 --~~~~~a~~~~~~~~~~~ 194 (464)
|++++|.+.+++..+.+
T Consensus 140 ~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 99999999999988764
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=2.6e-07 Score=85.65 Aligned_cols=357 Identities=8% Similarity=-0.073 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGF-LDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 86 (464)
..|...+..+-. |+++.+..+|++++ ...|+..+|...+....+.+. .+....+|+...
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal-------------------~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCL-------------------KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHS-------------------TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHh-------------------ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 344444444433 67777777777776 456777888888887777763 466777888776
Q ss_pred hC-CC-CCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------------cCChhh
Q 047873 87 KH-YF-RIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK-------------EGKIKD 147 (464)
Q Consensus 87 ~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ 147 (464)
.. |. +.+...|...+..+.. .++.+.+..+|++++......-...|......-.. .+.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 54 32 3355667776665432 35677888899998874211111222222211111 112233
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcC--C-----hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAK--N-----LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
|..+++.+...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444332100012335555444432221 1 234667888887653 4467788888888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC---------C---CCCHHhHHHHHHHHHhC
Q 047873 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG---------L---NPDKITYTILLDGFCKE 288 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~ 288 (464)
+|++.... +.+...+.. |......+ +. ++.+...- . ......|...+....+.
T Consensus 235 i~erAi~~--P~~~~l~~~----y~~~~e~~------~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 235 VVERGIEM--SDGMFLSLY----YGLVMDEE------AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHH--CCSSHHHHH----HHHHTTCT------HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCcHHHHHH----HHhhcchh------HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 99999987 334333322 22211111 11 22221110 0 01124566667777778
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG-KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
++.+.|..+|+.. .. ...+...|...+..-...+ +.+.|..+|+...+.. +.+...+...++...+.|+.+.|..+
T Consensus 300 ~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999999 32 2234455554333333333 6999999999998853 23345566677777889999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99983 2678888888887888999999999988763
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=1e-08 Score=83.86 Aligned_cols=165 Identities=12% Similarity=-0.064 Sum_probs=137.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC----ChhhHHHHHHHHHhcCCCCChhhH
Q 047873 57 LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN----LPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+..++..+...|...+++++|+++|++..+.+ ++.++..+...|.. + ++++|..+|++..+.| ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 355888889999999999999999999998876 56778888888887 6 8999999999998865 77788
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHhhCCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHH
Q 047873 133 NVLMHKLCK----EGKIKDAQMVFDEFGKRGLH-ATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYS 203 (464)
Q Consensus 133 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (464)
..|..+|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|..+|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 888888887 88999999999999887521 126788889999988 88999999999999876 23555677
Q ss_pred HHHHHHHhc-C-----ChhHHHHHHHHHHHCCC
Q 047873 204 ALINGLCKE-N-----RLDDAELLLHEMCERGL 230 (464)
Q Consensus 204 ~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 230 (464)
.|..+|..- | ++++|..+|+...+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 788887653 3 89999999999988763
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=5e-09 Score=90.28 Aligned_cols=157 Identities=13% Similarity=-0.022 Sum_probs=129.4
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHH-
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT- 169 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 169 (464)
+.+...+..+...+...|++++|...|+++++..+. +...+..+..++...|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 445667888888999999999999999999998765 7889999999999999999999999998776 345443333
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP-NDVIFTTLIDGHCKNG 248 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 248 (464)
....+...++.+.|...+++..... +.+...+..+...+...|++++|+..|.++.+..... +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667888899999999988764 4567889999999999999999999999999874332 2677889999999999
Q ss_pred Ccc
Q 047873 249 RID 251 (464)
Q Consensus 249 ~~~ 251 (464)
+.+
T Consensus 270 ~~~ 272 (287)
T 3qou_A 270 TGD 272 (287)
T ss_dssp TTC
T ss_pred CCC
Confidence 876
No 114
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.08 E-value=2.9e-09 Score=79.83 Aligned_cols=121 Identities=9% Similarity=-0.108 Sum_probs=80.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHH
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 80 (464)
..+.++.+|..++..+...|++++|++.|++++ ...|+. .++..+...+...|++++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAI-------------------KRNPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH-------------------TTCTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HcCCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 345667777777777777777777777777777 334433 677777777777777777777
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
.|++..... +.+...+..+..++...|++++|...++++.+..+. +...+..+..++...|
T Consensus 72 ~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 72 DCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777776654 335566666777777777777777777777665433 4445555555554443
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=2.4e-08 Score=81.64 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChhhHHHH
Q 047873 76 DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG----KIKDAQMV 151 (464)
Q Consensus 76 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 151 (464)
.+|++.|++..+.+ ++.++..+...+...+++++|+.+|++..+.| ++..+..+..+|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45788888888775 67788888999999999999999999998865 67788888888887 6 89999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMR-PDVYTYSALINGLCK----ENRLDDAELLL 222 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 222 (464)
|++..+.| +...+..+...|.. .+++++|+.+|++..+.|.. .....+..|..+|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 66778888888877 88999999999999877521 126778888888888 88999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC
Q 047873 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (464)
++..+. ..+...+..+...|.....-....++++|...|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999886 22445666777777654210012356899999998887664
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=5.9e-10 Score=95.71 Aligned_cols=196 Identities=8% Similarity=0.002 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+...+..++..+...|++++|++.|++++. ..|+. .++..+...|.+.|++++|+..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 61 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-------------------RNPLVAVYYTNRALCYLKMQQPEQALADC 61 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45788999999999999999999999999984 34544 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
++..+.+ +.+...+..++.++...|++++|...|+++++..+. +...+...+....+.. .+.. +........+.
T Consensus 62 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~ 135 (281)
T 2c2l_A 62 RRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQ 135 (281)
T ss_dssp HHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhh
Confidence 9999886 556788999999999999999999999998875432 2112221222222111 1111 12222233344
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV-YTYSALINGLCKE-NRLDDAELLLHEMCER 228 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 228 (464)
+......+.. + ..|++++|.+.++...+. .|+. .....+...+.+. +.+++|.++|.++.+.
T Consensus 136 ~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 136 ESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4444444433 2 368889999888887765 4443 3334444444444 6678899999887653
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=1.3e-09 Score=83.36 Aligned_cols=103 Identities=10% Similarity=-0.083 Sum_probs=83.1
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
...|+. ..+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|+++++..+. ++..|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 345555 777888888888888888888888888776 556778888888888888888888888888887765 67788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+..++...|++++|...|++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888776
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=7e-09 Score=98.94 Aligned_cols=155 Identities=10% Similarity=-0.065 Sum_probs=120.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++.++..+. +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988775 456788999999999999999999999999987765 788999999999999999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE---NRLDDAELLLHEMCER 228 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 228 (464)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 4467789999999999999999999999998764 34677888999999999 9999999999999887
Q ss_pred CC
Q 047873 229 GL 230 (464)
Q Consensus 229 ~~ 230 (464)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=2.2e-08 Score=82.12 Aligned_cols=129 Identities=12% Similarity=-0.078 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
...+..++..+...|++++|++.|++++ +|+..++..+...|.+.|++++|++.|++..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc---------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677888888999999999888764 3455788888889999999999999999888
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCChhhHHH
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV----------------YVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~ 150 (464)
... +.+..++..+..++...|++++|+..|+++++..+. +. ..+..+..++...|++++|.+
T Consensus 65 ~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 65 NRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 775 456778888888899999999999999988875543 22 667778888888888888888
Q ss_pred HHHHHhhC
Q 047873 151 VFDEFGKR 158 (464)
Q Consensus 151 ~~~~~~~~ 158 (464)
.|+...+.
T Consensus 143 ~~~~al~~ 150 (213)
T 1hh8_A 143 QLALATSM 150 (213)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 88888766
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=5.4e-09 Score=77.43 Aligned_cols=103 Identities=9% Similarity=-0.147 Sum_probs=87.0
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+.|+. ..+...+..|.+.|++++|++.|++..+.+ |.+...|..+..++.+.|++++|+..++++++..+. +...|
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 456666 778888889999999999999999988876 556788888888899999999999999998887665 77888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+..++...|++++|.+.|++..+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999888776
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=7.7e-09 Score=80.95 Aligned_cols=129 Identities=9% Similarity=-0.060 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...|..++..+...|++++|++.|++++. ..|+ ..++..++..+...|++++|++.|++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE-------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777777888888777777763 2233 367777777777777777777777777
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH--HHHHHHhcCChhhHHHHHHHHh
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV--LMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
.... +.+...+..++..+...|++++|...++++++..+. +...+.. .+..+...|++++|.+.+....
T Consensus 74 ~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 74 IELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7664 345566777777777777777777777777765543 4444422 3333556677777777666543
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=4.4e-09 Score=80.39 Aligned_cols=129 Identities=9% Similarity=-0.096 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+...+.+.+...+.+.+++++ . |.+...+..+...+.+.|++++|+..|+++++..+. ++..|..+..++
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l-------~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~ 80 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI-------P-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS-------C-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHhCC-------C-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4555666666665555554332 2 334556777777888888888888888888877655 777888888888
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 200 (464)
...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 88888888888888877764 345677778888888888888888888887765 34443
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=7.2e-09 Score=77.31 Aligned_cols=119 Identities=10% Similarity=-0.047 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+...|..++..+...|++++|++.|++++.. .| +..++..++..+...|++++|++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 71 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-------------------NPANAVYFCNRAAAYSKLGNYAGAVQDCER 71 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------------------CCCCHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 4556666666666777777777777666631 22 235666666666666777777776666
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
..... +.+...+..++..+...|++++|...++++.+..+. +...+..+..++...|++
T Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 72 AICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66553 334555666666666666666666666666655433 455555555555555543
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=1.4e-08 Score=88.48 Aligned_cols=170 Identities=9% Similarity=-0.047 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..|...+.+|...|++++|++.|.+++.- ....+..+.. .+++.+...|...|++++|+..|++..
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~-------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEA-------------HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35666666777777777777777776621 1111111111 566777777777777777777777654
Q ss_pred hC----CCCC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 87 KH----YFRI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-----SVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 87 ~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
.. +-+. ...++..+...+.. |++++|+..|++.++..... ...++..+..++...|++++|...|++..
T Consensus 104 ~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 104 VMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 1111 13455666666766 77777777777766532111 13456666777777777777777777665
Q ss_pred hC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 157 KR----GLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 157 ~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.. +..+. ...+..+..++...|++++|...|++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 43 10000 1234445555666677777777777766
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.96 E-value=7.3e-07 Score=77.27 Aligned_cols=185 Identities=8% Similarity=-0.111 Sum_probs=142.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
+++.+-....+.+..++|+++++.+...+ |-+..+|+.-...+...| .+++++..++.++...++ +..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 33444444555666789999999999886 446677888878888888 599999999999988776 888888888777
Q ss_pred Hhc-C-ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh--------HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047873 140 CKE-G-KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD--------EGFRLKSVMEGSGMRPDVYTYSALINGL 209 (464)
Q Consensus 140 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 209 (464)
... + ++++++++++.+.+.. +.|..+|+...-.+.+.+.++ ++++.++++.+.. .-|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 776 7 8899999999998875 457777777666666666666 8999999988775 44788888888888
Q ss_pred HhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 210 CKENR-------LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 210 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
.+.+. ++++++.++++....+. |...|+.+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 88776 68889999888877533 777887777777666653
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.96 E-value=3.3e-07 Score=79.44 Aligned_cols=233 Identities=11% Similarity=0.037 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC-ChhHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG-FLDDAIQCFRLL 85 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~ 85 (464)
.+++.+.......+..++|++++.+++ .+.|+. .+|+.-...+...| .++++++.++.+
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L-------------------~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~ 115 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIV-------------------RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEF 115 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455666555666777788999999998 557777 99999999998889 599999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcC-C-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh--------hHHHHHHHH
Q 047873 86 RKHYFRIPARGCRCLIDRMMRT-N-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK--------DAQMVFDEF 155 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~ 155 (464)
.... |-+..+|+.-...+... + +++++++.++++++..+. +..+|+.-..++...|.++ ++++.++++
T Consensus 116 L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 116 AVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 9886 55677887777777666 6 889999999999987766 8888888777777777777 899999999
Q ss_pred hhCCCCCCcccHHHHHHHHHhcCC-------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-------------
Q 047873 156 GKRGLHATAVSFNTLINGHCKAKN-------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL------------- 215 (464)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------- 215 (464)
.+.+ +.|...|+.....+.+.+. ++++++.++..+... +-|...|+.+-..+.+.|+.
T Consensus 194 I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 194 LRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 8875 4578889888888887776 688888888888764 44777888777777766654
Q ss_pred -------hHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 216 -------DDAELLLHEMCERG-----LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 216 -------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
....+....+...+ -.++......+...|...++. ++|.++++.+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~------~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV------DDAAKVFEKLSSE 331 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhh
Confidence 22233333332221 135777888888899887765 6899999998654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=2.1e-08 Score=73.99 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..+|..++..+...|++++|++.|++++.. .+.+..++..++..+...|++++|+..|+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 566777777777777777777777777632 11233666777777777777777777777776
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
... +.+...+..+...+...|++++|...++++.+..+. +...+..+..++.
T Consensus 71 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 71 ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 654 335556666667777777777777777777665443 4444444444443
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1e-08 Score=76.09 Aligned_cols=100 Identities=6% Similarity=-0.152 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+...|..++..+...|++++|++.|++++. ..|+. .+|..+..+|.+.|++++|+..|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 62 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-------------------RAPEDARGYSNRAAALAKLMSFPEAIADCN 62 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4567888889999999999999999999884 34444 888889999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
+..+.+ |.+...+..+..++...|++++|...|+++++..
T Consensus 63 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 63 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 988876 4467788888888889999999999988888754
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=8.4e-09 Score=78.91 Aligned_cols=103 Identities=13% Similarity=-0.071 Sum_probs=88.3
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
...|+. ..+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++++...+. ++..+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~ 92 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFP 92 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 556666 788888999999999999999999988876 557788888899999999999999999999887765 77888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+..++...|++++|.+.|+...+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999988765
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.2e-08 Score=85.32 Aligned_cols=196 Identities=9% Similarity=-0.111 Sum_probs=148.3
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDAL-------MIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
..+++.+|.+.|.++. ...|+. ..|..+ ...+.+.++..+++..+..-...
T Consensus 18 ~~~d~~~A~~~F~~a~-------------------~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l-- 76 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT-------------------NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI-- 76 (282)
T ss_dssp TTTCHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--
T ss_pred cCCCHHHHHHHHHHHH-------------------HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6899999999999998 456666 889888 67788888888888888776552
Q ss_pred CCC----------------------hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 91 RIP----------------------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 91 ~~~----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
.|. ..........+...|++++|.++|+.+...++. +. ....+...+.+.+++++|
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHH
Confidence 111 123345667788999999999999998876532 33 666677789999999999
Q ss_pred HHHHHHHhhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHAT--AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD--VYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
+..|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|++
T Consensus 155 ~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 155 IDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998655431 111 24678888999999999999999999985433243 34566788889999999999999999
Q ss_pred HHHCCCCCCHHHHHHH
Q 047873 225 MCERGLTPNDVIFTTL 240 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~l 240 (464)
+.... |+...+..|
T Consensus 234 a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 234 LQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHS--CCHHHHHHH
T ss_pred HHhcC--CcHHHHHHH
Confidence 99874 444433333
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=6e-09 Score=82.70 Aligned_cols=120 Identities=8% Similarity=-0.003 Sum_probs=88.7
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
...|++++|++.|++++. ..|+. .+|..+...|...|++++|+..|++..... +.+...
T Consensus 21 ~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 80 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR-------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAEL 80 (177)
T ss_dssp C-----CCCCHHHHHHHH-------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHH
T ss_pred hhccCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 456778888888888773 23433 788888888888888888888888887765 345667
Q ss_pred HHHHHHH-HHcCCCh--hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 97 CRCLIDR-MMRTNLP--TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 97 ~~~l~~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+..+..+ +...|++ ++|...++++++..+. +...+..+..++...|++++|...|+...+.
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777 6678887 8888888888877654 6777778888888888888888888888776
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=9.8e-09 Score=90.54 Aligned_cols=145 Identities=11% Similarity=-0.090 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+..+|..++..|...|++++|+..|++++........... .... ...+. ..++..+..+|.+.|++++|+..|++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~---~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQ---KAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHH---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678899999999999999999999999853211000000 0000 00000 26778888888888888888888888
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH-HHHHHHHh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFG 156 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 156 (464)
..+.. +.+..++..+..++...|++++|+..|+++++..+. +..++..+..++...|+.++| ..+|..|.
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 446777888888888888888888888888877654 677777788888888888777 34555543
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=1.3e-07 Score=77.42 Aligned_cols=127 Identities=9% Similarity=-0.090 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..+...+...|++++|+..|++.. .++..++..++..+...|++++|+..++++++..+. +...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34556777889999999999998763 457788899999999999999999999999887654 7888889999999
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCc----------------ccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATA----------------VSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
..|++++|.+.|++..+.. +.+. ..+..+..++...|++++|...++...+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999988753 2222 55667777777778888888777777765
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=2e-08 Score=76.73 Aligned_cols=102 Identities=9% Similarity=-0.098 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+..++..++..+...|++++|+..|++++. ..|++ ..|..+..+|...|++++|+..|
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34677888999999999999999999999983 34544 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
++....+ |.+...+..+..++...|++++|...|+++++..+
T Consensus 79 ~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 79 SYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999886 45678889999999999999999999999988654
No 135
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=1.1e-08 Score=77.83 Aligned_cols=95 Identities=19% Similarity=-0.049 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|+++++..+. ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 333444444444444444444444444433 223344444444444444444444444444444332 334444444444
Q ss_pred HhcCChhhHHHHHHHHh
Q 047873 140 CKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~ 156 (464)
...|++++|.+.|+...
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=3.3e-07 Score=79.18 Aligned_cols=163 Identities=9% Similarity=-0.063 Sum_probs=104.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhhHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFR-IPA----RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYVFNV 134 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 134 (464)
.+..+...|++++|...+++....... ++. ..+..++..+...+++++|+..++++++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677788888888888887664311 111 12234556666677888888888888764322 22 225777
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhC-----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC-HHHHH
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKR-----GLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRPD-VYTYS 203 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 203 (464)
+..+|...|++++|...|++..+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777888888888888888777631 1111 1235677777788888888888877766532 21112 55677
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHH
Q 047873 204 ALINGLCKENR-LDDAELLLHEMCE 227 (464)
Q Consensus 204 ~l~~~~~~~~~-~~~a~~~~~~~~~ 227 (464)
.+..++.+.|+ +++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77778888884 5788877777653
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.85 E-value=3.3e-08 Score=80.21 Aligned_cols=120 Identities=12% Similarity=-0.023 Sum_probs=69.0
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-C
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH----YF-R 91 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~ 91 (464)
...|++++|.+.++.+. +.++.. .++..+...+...|++++|+..|++.... +. +
T Consensus 3 ~~~g~~~~A~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 63 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-------------------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63 (203)
T ss_dssp ----CHHHHHHHHHHHH-------------------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cccccHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH
Confidence 45788888888655554 333333 77777888888888888888888776552 11 1
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhc---CC-CC--ChhhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDY---GY-SP--SVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
....++..+...+...|++++|...+++.++. .. .+ ....+..+...+...|++++|...+++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12344556666666677777777666665543 11 11 12334455555556666666666555543
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=3.7e-06 Score=72.55 Aligned_cols=162 Identities=10% Similarity=0.050 Sum_probs=121.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CC----HhhH
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIE-LDN----VAFTALISGFCRGGKVVEAERMLREMLKVGLK-PD----DATY 348 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 348 (464)
...+..+...|++++|..+++...+.... |+. ..+..+...+...+++++|...++++...... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33467788899999999999998875322 221 13335667777888999999999999884322 22 2368
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLD----LGVVPD-DIT 417 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~ 417 (464)
+.+..+|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..+ .+..+. ...
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999999998852 1112 234788899999999999999999998874 222222 678
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHh
Q 047873 418 YNILLEGHCKHGN-PEDFDKLQSE 440 (464)
Q Consensus 418 ~~~l~~~~~~~g~-~~~a~~~~~~ 440 (464)
+..+..+|.+.|+ +++|.+.+++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8889999999995 5888887765
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=3.1e-08 Score=73.49 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
...++.-++..+.+.|++++|++.|++++ .+.|+. .+|..+..+|...|++++|++.|++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-------------------~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAI-------------------ELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 45678889999999999999999999988 345555 8888899999999999999999988
Q ss_pred HHhCCCCC--C----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 85 LRKHYFRI--P----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 85 ~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
..+.+... . ..++..++.++...|++++|++.|++.++.. |++.+.
T Consensus 68 al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~ 119 (127)
T 4gcn_A 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELV 119 (127)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHH
T ss_pred HHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHH
Confidence 87653111 1 2356667777778888888888888877643 454443
No 140
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=9.6e-08 Score=83.18 Aligned_cols=168 Identities=14% Similarity=0.018 Sum_probs=110.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHhccCChHHHHHHHHHHHHCC--C-CCC--Hh
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIE---L--DNVAFTALISGFCRGGKVVEAERMLREMLKVG--L-KPD--DA 346 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~ 346 (464)
.|......|...|++++|...+.+..+.... + -..+|..+...|...|++++|...+++..+.. . .+. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455566777788888888888776653111 0 13467777788888888888888888766431 0 111 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC---Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HH
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGH---LP--AVETYNALMNGLCKHGQLKNANMLLDTMLDL----GVVPD-DI 416 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~ 416 (464)
++..+..+|.. |++++|+..|++..+... .+ ...++..+...|.+.|++++|+..+++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 66777777877 888888888887766310 00 1456777788888888888888888877642 11111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 417 TYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 417 ~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
.+..+..++...|++++|...+++ + +.|+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 555566667777888888888887 5 6664
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=8.6e-08 Score=74.87 Aligned_cols=128 Identities=13% Similarity=-0.031 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+..|++..... +.+..++..++..+...|++++|...+++.++..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 456667777777888888888888777664 345666777777777777777777777777766543 566677777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHH--HHHHHHhcCChhHHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNT--LINGHCKAKNLDEGFRLKSVM 190 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 190 (464)
...|++++|...|++..... +.+...+.. .+..+...|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777766542 223333322 222244556666666655544
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=1.1e-07 Score=71.03 Aligned_cols=116 Identities=9% Similarity=-0.089 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+.+.|++++|+..|++..... +.+...+..+...+...|++++|...++++++..+. +...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 788888888999999999999999888775 446777888888888889999999998888886654 677888888888
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 88888888888888877653 223445555555555443
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=8.3e-08 Score=69.92 Aligned_cols=110 Identities=9% Similarity=-0.118 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
++..|..++..+...|++++|+..|++++. ..| +..++..+...+...|++++|+..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK-------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 456778888888888888888888888873 233 347777888888888888888888888
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
..... +.+...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 64 ~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 64 TVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 87765 345667777777888888888888888887776543 444444433
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.81 E-value=3.6e-08 Score=71.15 Aligned_cols=103 Identities=7% Similarity=-0.108 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|.+...|..++..+...|++++|+..|++++.. .+.+..++..+...+...|++++|++.|+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 64 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL------------------DPEESKYWLMKGKALYNLERYEEAVDCYN 64 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------------------CcCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 445667777777777788888888887777632 12233667777777777777777777777
Q ss_pred HHHhCCCCC--ChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCC
Q 047873 84 LLRKHYFRI--PARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 84 ~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 125 (464)
+..+.. +. +...+..+...+... |++++|.+.++++....+
T Consensus 65 ~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 65 YVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 777664 33 456666777777777 777777777777776543
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=4.8e-08 Score=76.31 Aligned_cols=103 Identities=14% Similarity=-0.047 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+.+...|..++..+...|++++|++.|++++. ..|+. .+|..+..+|.+.|++++|+..|
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS-------------------IAPANPIYLSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34567788888888888888888888888873 33444 78888888888888888888888
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
++....+ +.+...+..+..++...|++++|...|+++++..+.
T Consensus 69 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 69 ELATVVD-PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8888775 445777888888888888888888888888876543
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=6.7e-07 Score=77.25 Aligned_cols=165 Identities=9% Similarity=-0.034 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-----hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC---CC--hhh
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-----RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS---PS--VYV 131 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 131 (464)
+...+..+...|++++|++.++.........+. ..+..++..+...|++++|+..+++.++.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677778888888887776655321110 12334555566677788888877777653221 11 336
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhC-CCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHAT-----AVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRP-DVY 200 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 200 (464)
++.+...|...|++++|...|++..+. ...++ ..++..+...|...|++++|...+++..+. +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 677777777788888887777776521 00111 146667777777778888777777766532 1111 145
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047873 201 TYSALINGLCKENRLDDA-ELLLHEMC 226 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a-~~~~~~~~ 226 (464)
+|..+..+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 667777777777777777 66566554
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=5e-09 Score=92.43 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--------------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..+..+...|.+.|++++|+..|++......... ..++..+..++.+.|++++|+..++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5566666667777777777777776665541111 23444444444444444444444444444332
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. +..++..+..++...|++++|...|++..+
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 344444444444444444444444444433
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=4.9e-07 Score=78.12 Aligned_cols=173 Identities=8% Similarity=-0.077 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
...+...+..+...|++++|++.+++.+......... .. ....+..+...+...|++++|+..|++..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF---QQ---------FLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH---HH---------HHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH---HH---------HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3455667788899999999999999988532210000 00 00234456777888999999999999987
Q ss_pred hCCCC---CC--hhcHHHHHHHHHcCCChhhHHHHHHHHHh---cCCC-C--ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 87 KHYFR---IP--ARGCRCLIDRMMRTNLPTVTLGFYLEILD---YGYS-P--SVYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 87 ~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
..... +. ..++..++..+...|++++|...++++++ .... + ...++..+..+|...|++++|...+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 54211 11 34788899999999999999999999873 2211 1 1257888999999999999999999987
Q ss_pred hhCC----CCC-CcccHHHHHHHHHhcCChhHH-HHHHHHHh
Q 047873 156 GKRG----LHA-TAVSFNTLINGHCKAKNLDEG-FRLKSVME 191 (464)
Q Consensus 156 ~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 191 (464)
.... ... -..+|..+..+|.+.|++++| ...++...
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6431 111 145678889999999999999 77777665
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2e-07 Score=71.09 Aligned_cols=109 Identities=6% Similarity=-0.148 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP----GLVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 79 (464)
+.+...|..++..+...|++++|++.|++++ ...|+ ..++..+...|...|++++|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 85 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQAL-------------------GLDATPQDQAVLHRNRAACHLKLEDYDKAE 85 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------------------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------HHcccchHHHHHHHHHHHHHHHHccHHHHH
Confidence 4566777777777777777777777777777 34444 356666777777777777777
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
..|++..... +.+...+..+..++...|++++|...+++.++..+. +...+.
T Consensus 86 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 137 (148)
T 2dba_A 86 TEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQE 137 (148)
T ss_dssp HHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHH
Confidence 7777766654 334556666667777777777777777777665432 344433
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.79 E-value=8.6e-08 Score=71.31 Aligned_cols=118 Identities=7% Similarity=-0.119 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+..|++..... +.+...+..+...+...|++++|...++++.+..+. +...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 667777778888888888888888877764 345667777777788888888888888887776543 566777777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (464)
...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 78888888888887776653 23455566666666655543
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=4.6e-08 Score=74.26 Aligned_cols=110 Identities=9% Similarity=-0.147 Sum_probs=90.9
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
.|+++...+ |.+...+..+...+...|++++|...|++++...+. +...|..+..++...|++++|...|+.....+
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444433 334556777888899999999999999999988765 88899999999999999999999999998875
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+.+...+..+..++...|++++|...|+...+.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778889999999999999999999998765
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=2e-07 Score=68.59 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|++.|+++.... +.+...+..++..+...|++++|...++++.+..+. +..++..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 567777777888888888888888877664 345566777777777778888888888777766543 566677777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
...|++++|...++++.+.. +.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 77777777777777776553 22333444444333
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=3.7e-08 Score=78.05 Aligned_cols=121 Identities=9% Similarity=0.012 Sum_probs=80.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--h
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK-LCKEGKI--K 146 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 146 (464)
...|++++|+..|+...... +.+...+..+...+...|++++|...|+++++..+. +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45677777777777776664 445667777777777777777777777777766543 56666666666 6677776 7
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+|...++...+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776653 234556666777777777777777777776655
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=4e-08 Score=84.28 Aligned_cols=195 Identities=12% Similarity=-0.012 Sum_probs=131.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
...+..++..+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|+..++++++..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3677888899999999999999999998875 447788999999999999999999999999987654 78889999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
+...|++++|...|++..+.+ +.+...+...+....+ ...+..... ........+......+... ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999887652 1111122222222221 111122221 2222234444444444332 26888999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 219 ELLLHEMCERGLTPNDV-IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
++.++...+. .|+.. ....+...+.+.+ +.++++.++|..+.+.
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~-----~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHD-----KYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHH-----HHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHH-----HHHHHHHHHHHhhhcc
Confidence 9998887765 34433 3333333333331 1235788888877653
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=1.9e-07 Score=75.40 Aligned_cols=144 Identities=8% Similarity=-0.102 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCCh--HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSS--ASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
....|..++..+...|++++|++.|++++......+. ......... .....++..+..+|.+.|++++|+..++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3567888999999999999999999999853211000 000000000 0001577778888888888888888888
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH-HHHHHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ-MVFDEF 155 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~ 155 (464)
+..... +.+..++..+..++...|++++|...|+++++..+. +..++..+..++...++..++. ..+..+
T Consensus 113 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 113 KVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765 446677788888888888888888888888876554 6667777777776666666555 344444
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=1.7e-07 Score=70.50 Aligned_cols=100 Identities=6% Similarity=-0.044 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+.++..|..++..+...|++++|+..|++++. ..|+. .++..+...+...|++++|+..|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-------------------RNPLVAVYYTNRALCYLKMQQPEQALADC 66 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34566777777777777777777777777763 23333 66677777777777777777777
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
++....+ +.+...+..+..++...|++++|...|+++++.
T Consensus 67 ~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 67 RRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7766654 334556666666666777777777766666553
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=1.8e-07 Score=75.76 Aligned_cols=62 Identities=13% Similarity=-0.031 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKR----GI-ELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
.++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555555444431 00 0112234444444444444444444444443
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.69 E-value=1.9e-08 Score=81.44 Aligned_cols=96 Identities=8% Similarity=0.002 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----------------hcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA----------------RGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
..+..+...+...|++++|++.|++....... +. .++..+..++...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45556666677777777777777776664311 11 34444444444555555555555554444
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
.+. +..++..+..++...|++++|.+.|++..+
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 322 344444444444455555555555444443
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=9e-08 Score=71.22 Aligned_cols=112 Identities=9% Similarity=-0.054 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...+|..++..+...|++++|+..|++++.. .+.+..++..++..|...|++++|+..|++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL------------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------CCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4677888889999999999999999988742 1223477888888888999999999999888
Q ss_pred HhCCCC--CC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 86 RKHYFR--IP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 86 ~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
...... ++ ..++..+...+...|++++|...++++.+.. |+......+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 765411 11 5567777777888888888888888877754 34544444433
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.3e-07 Score=79.07 Aligned_cols=200 Identities=10% Similarity=-0.068 Sum_probs=144.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHH-------HHHHHcCCChhhHHHHHHHHHhcCCC-----CC-------
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL-------IDRMMRTNLPTVTLGFYLEILDYGYS-----PS------- 128 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~------- 128 (464)
++ +.++...|++.|.++.+.+ |-....|..+ ...+...++..+++..+...+...+. -+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 44 6899999999999999986 4467788877 56676667777777777766552110 00
Q ss_pred --------hhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--
Q 047873 129 --------VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-- 198 (464)
Q Consensus 129 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 198 (464)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2233456778899999999999999987653 433366666778889999999999998665432 111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH
Q 047873 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276 (464)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (464)
...+..+..++...|++++|++.|++.......|. .........++.+.|+. ++|...|+++.... |+..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~------deA~~~l~~a~a~~--P~~~ 242 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE------SAAVALLEWLQTTH--PEPK 242 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHS--CCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcC--CcHH
Confidence 33677889999999999999999999985433243 33556667778887776 69999999998864 4443
Q ss_pred hHHH
Q 047873 277 TYTI 280 (464)
Q Consensus 277 ~~~~ 280 (464)
....
T Consensus 243 ~~~a 246 (282)
T 4f3v_A 243 VAAA 246 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.68 E-value=7.7e-08 Score=70.57 Aligned_cols=91 Identities=11% Similarity=-0.017 Sum_probs=40.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
+...+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++++..+. +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444433 223344444444444444444444444444444332 34444444444444444
Q ss_pred hhhHHHHHHHHhh
Q 047873 145 IKDAQMVFDEFGK 157 (464)
Q Consensus 145 ~~~a~~~~~~~~~ 157 (464)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=4.5e-07 Score=67.06 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..++++++..+. +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 566677778888888888888888887775 446677888888888888888888888888877654 677777888888
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 047873 140 CKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~ 158 (464)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888877654
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.66 E-value=8.1e-06 Score=70.45 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=136.6
Q ss_pred hCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC----------hhHHHHHHHHHH
Q 047873 19 AHKMHS-QARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF----------LDDAIQCFRLLR 86 (464)
Q Consensus 19 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----------~~~A~~~~~~~~ 86 (464)
+.|.+. +|++++..++ ...|+. .+|+.--..+...|. +++++.+++.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L-------------------~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L 101 (331)
T 3dss_A 41 QAGELDESVLELTSQIL-------------------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 101 (331)
T ss_dssp HTTCCSHHHHHHHHHHH-------------------TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH-------------------HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 566664 7888888888 778888 888877776665554 678999999988
Q ss_pred hCCCCCChhcHHHHHHHHHcCCC--hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hhhHHHHHHHHhhCCCCCC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNL--PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK-IKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~ 163 (464)
..+ |-+..+|..-...+...+. +++++..++++++..+. |..+|+.-..++...|. ++++++.++.+...+ +.|
T Consensus 102 ~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N 178 (331)
T 3dss_A 102 RVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 178 (331)
T ss_dssp HHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCC
T ss_pred HhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCC
Confidence 876 4577788777777777774 78999999999988776 88888888888888888 588999999988875 457
Q ss_pred cccHHHHHHHHHhc--------------CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----------CChhHH
Q 047873 164 AVSFNTLINGHCKA--------------KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE-----------NRLDDA 218 (464)
Q Consensus 164 ~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a 218 (464)
...|+.....+... +.++++++.+....... +-|..+|+-+-..+.+. +.++++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 77787776666554 34667777777776553 34666666554444443 335666
Q ss_pred HHHHHHHHHC
Q 047873 219 ELLLHEMCER 228 (464)
Q Consensus 219 ~~~~~~~~~~ 228 (464)
++.++++.+.
T Consensus 258 l~~~~elle~ 267 (331)
T 3dss_A 258 LESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777777665
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=5.8e-07 Score=66.71 Aligned_cols=96 Identities=16% Similarity=-0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG----LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
++..++..+...|++++|++.|++++.. .|+. .++..+...+.+.|++++|+..|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-------------------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4555667777888888888888887742 2222 4667777778888888888888887
Q ss_pred HHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 85 LRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 85 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
+.... |.+ ..++..+..++...|++++|...|+++++..
T Consensus 65 ~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 65 LVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77664 223 4556667777777777777777777777654
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=1e-06 Score=63.99 Aligned_cols=97 Identities=13% Similarity=-0.031 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|++.|++..... +.+...+..+...+...|++++|...++++.+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 456667777777888888888888877664 345666777777777778888888777777776543 566677777777
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 047873 140 CKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~ 158 (464)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777777655
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.61 E-value=1.7e-08 Score=93.35 Aligned_cols=127 Identities=9% Similarity=-0.062 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+..+|..++..+...|++++|++.|++++. ..|+. .++..+..+|.+.|++++|++.|++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIE-------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344556667778889999999999999984 34554 8899999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhhHHHHHH
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK--LCKEGKIKDAQMVFD 153 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 153 (464)
..+.+ +.+..++..+..++...|++++|.+.++++++..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 66 al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 66 AIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 98886 456778888999999999999999999999887654 55566666655 788899999999888
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=4.3e-07 Score=67.24 Aligned_cols=98 Identities=7% Similarity=-0.081 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--C----hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--S----VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 133 (464)
.++..++..+.+.|++++|++.|++..+.. |.+..+|..+..++...|++++|+..+++.++..+.. + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677888888888888888888887775 4456777778888888888888888888877643221 1 12455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666777777777777766553
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.60 E-value=2.4e-07 Score=72.05 Aligned_cols=109 Identities=10% Similarity=0.006 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCC---------CCCh-hhHHHHHHHHHhcCCh
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---------HLPG-LVLDALMIVYVDLGFL 75 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~l~~~~~~~g~~ 75 (464)
.+..|...+..+...|++++|+..|.+++.. +...... .. .|.. .++..+..+|.+.|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTR---------LDTLILR-EKPGEPEWVELDRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHHT-SCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 4667889999999999999999999999842 1111110 00 2233 6788888899999999
Q ss_pred hHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 76 DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 76 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
++|+..++.....+ |.+..++..++.++...|++++|...|+++++..+
T Consensus 80 ~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 80 HEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99999999988876 55677888888899999999999999999888654
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=4.5e-05 Score=65.82 Aligned_cols=196 Identities=11% Similarity=-0.021 Sum_probs=140.1
Q ss_pred HHhcCChh-HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------hhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 69 YVDLGFLD-DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL----------PTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 69 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
..+.|.++ +|+++++.+...+ |-+..+|+.-...+...+. +++++.+++.++...+. +..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44566655 8999999999886 4455666655555544443 57899999999988776 8899998888
Q ss_pred HHHhcCC--hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--
Q 047873 138 KLCKEGK--IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN-LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE-- 212 (464)
Q Consensus 138 ~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 212 (464)
++...++ +++++.+++.+.+.. +.|..+|+.-.-.+...|. ++++++.++.+++.. +-|..+|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 8888884 899999999999875 4578888888888888888 589999999998875 44777888777666655
Q ss_pred ------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCccc----ccCHHHHHHHHHHHHhC
Q 047873 213 ------------NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN-GRIDM----AGDMKEARKIVDEMCTN 269 (464)
Q Consensus 213 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~----~~~~~~a~~~~~~~~~~ 269 (464)
+.++++++.+.......+. |...|+.+-..+... |..+. .+.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4478889999988876433 677776554444443 11000 02245556666666553
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=1e-06 Score=68.63 Aligned_cols=97 Identities=6% Similarity=-0.208 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|++.|++..... +.+...+..+..++...|++++|+..++++++..+. +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 778888889999999999999999988876 446778888999999999999999999999987755 788888899999
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 047873 140 CKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~ 158 (464)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999988776
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.58 E-value=2.3e-07 Score=85.47 Aligned_cols=137 Identities=12% Similarity=-0.050 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCCh-HHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSS-ASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
....|..++..|.+.|++++|+..|++++........ ..-...- ..+. ..+|..+..+|.+.|++++|+..|+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA-----SESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH-----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4567889999999999999999999999853211000 0000000 0000 2566667777777777777777777
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
+..... +.+..++..+..++...|++++|+..|+++++..+. +..++..+..++...++.+++.
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 776664 345666666777777777777777777777765543 5566666666666666666554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=4.2e-07 Score=66.56 Aligned_cols=97 Identities=8% Similarity=-0.104 Sum_probs=85.6
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..+..+...+.+.|++++|+..++++++..+. +...|..+..++...|++++|+..|++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34667778889999999999999999998765 88999999999999999999999999998874 34677888999999
Q ss_pred HhcCChhHHHHHHHHHhhC
Q 047873 175 CKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~ 193 (464)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999865
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=5e-07 Score=80.55 Aligned_cols=133 Identities=5% Similarity=-0.116 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHH------HhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL------ETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
...|..++..+.+.|++++|++.|++++.. ..... ......|.. .+|..+..+|.+.|++++|+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---------~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 293 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---------VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV 293 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------hhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 456888999999999999999999999841 11000 000122333 67778888888888888888
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
+.+++..+.. +.+..++..+..++...|++++|+..|+++++..+. +...+..+..++...++.+++.+
T Consensus 294 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 294 DSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888775 445677777888888888888888888888776544 56666666666666666555543
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=1e-06 Score=63.28 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CChhhHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PSVYVFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 138 (464)
.++..++..+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++++..+. .+...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 566667777777777777777777776654 335566666777777777777777777777665321 035566666667
Q ss_pred HHhc-CChhhHHHHHHHHhhC
Q 047873 139 LCKE-GKIKDAQMVFDEFGKR 158 (464)
Q Consensus 139 ~~~~-~~~~~a~~~~~~~~~~ 158 (464)
+... |++++|.+.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 7777 7777777777776655
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=2.4e-07 Score=67.52 Aligned_cols=87 Identities=10% Similarity=-0.061 Sum_probs=63.7
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCC---CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
..|++++|++.|++++ .. .|+. .++..+...|...|++++|++.|++..+.. |-+.
T Consensus 2 ~~g~~~~A~~~~~~al-------------------~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 61 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-------------------ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQ 61 (117)
T ss_dssp -----CCCHHHHHHHH-------------------SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCCcHHHHHHHHHHHH-------------------HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCch
Confidence 3678888888888887 33 2444 778888888888888888888888888775 4456
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..+..+..++...|++++|+..+++.++..+
T Consensus 62 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777788888888888888888888877543
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.52 E-value=1.8e-06 Score=64.70 Aligned_cols=99 Identities=11% Similarity=-0.072 Sum_probs=77.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+...+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++++++..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34777788888888888888888888887765 445677788888888888888888888888876654 6777778888
Q ss_pred HHHhcCChhhHHHHHHHHhhC
Q 047873 138 KLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~ 158 (464)
++...|++++|...|+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888777654
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2.7e-06 Score=77.98 Aligned_cols=214 Identities=12% Similarity=-0.007 Sum_probs=142.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
-.+.+...|++++|++.|..+++................. .......++..++..|...|++++|.+.+..+.......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK-RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3566788999999999999998643211100000000000 000001357789999999999999999998876531111
Q ss_pred -Ch----hcHHHHHHHHHcCCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhC--CC
Q 047873 93 -PA----RGCRCLIDRMMRTNLPTVTLGFYLEILDY----GYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR--GL 160 (464)
Q Consensus 93 -~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 160 (464)
+. .+...+...+...|++++|..+++..... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 11 12233344455678999999999887642 2222 2456778999999999999999999887543 11
Q ss_pred C---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 161 H---ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRPD--VYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 161 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
. ....++..++..|...|++++|...++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 12346788899999999999999999887632 11111 34566777788889999999988877654
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=5.1e-07 Score=67.01 Aligned_cols=98 Identities=11% Similarity=-0.002 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC--CC----hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS--PS----VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 133 (464)
..+..++..+...|++++|+..|++..... +.+...+..+...+...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777788888888888888877664 445666777777777778888888877777665422 11 55666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..++...|++++|.+.|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6667777777777777777776654
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.50 E-value=2.3e-07 Score=81.80 Aligned_cols=149 Identities=7% Similarity=-0.043 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
....|..++..+...|++++|+..|++++.. .|+.. .+...|+.+++...+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-------------------~p~~~-------~~~~~~~~~~~~~~l~-- 229 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-------------------MGDDF-------MFQLYGKYQDMALAVK-- 229 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-------------------SCHHH-------HHTCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------hccch-------hhhhcccHHHHHHHHH--
Confidence 4567888999999999999999999998842 23222 1122233333332221
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
..++..+..++.+.|++++|+..++++++..+. +..++..+..+|...|++++|...|++..+.. +.+..
T Consensus 230 --------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~ 299 (338)
T 2if4_A 230 --------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKA 299 (338)
T ss_dssp --------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHH
Confidence 124555556666666666666666666655433 55566666666666666666666666655442 12333
Q ss_pred cHHHHHHH-HHhcCChhHHHHHHHHHhh
Q 047873 166 SFNTLING-HCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 166 ~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 192 (464)
.+..+... ....+..+.+..+|..+..
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333333 2233445555566665553
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=3e-06 Score=64.40 Aligned_cols=96 Identities=10% Similarity=-0.085 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
..+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|+..+++.++..+. +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 778888888889999999999999888775 33 566777888888888888888888888876544 67777788
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|++++|...|++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888888887765
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.49 E-value=7.1e-07 Score=67.35 Aligned_cols=109 Identities=5% Similarity=-0.119 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...+...+..+...|++++|++.|++++.-....+... .....| +..+|..+..++.+.|++++|+..|++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45678888999999999999999999984321100000 000000 0137888888888888888888888887
Q ss_pred HhC-------CCCCChhcH----HHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 86 RKH-------YFRIPARGC----RCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 86 ~~~-------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
.+. + |-+..+| .....++...|++++|+..|++.++.
T Consensus 84 L~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 84 LHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 765 4 2344556 66666777777777777777776653
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=2e-06 Score=66.44 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..++..++..+...|++++|++.|++++... +..+..... .++..+...+...|++++|++.|++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-------------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678888999999999999999999887321 110111111 57778888888999999999998886
Q ss_pred HhCCC----CC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 86 RKHYF----RI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-----PSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 86 ~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
..... ++ ....+..+...+...|++++|...+++.++.... .....+..+...+...|++++|.+.+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 54310 11 1334566666777777777777777766542110 01234455555566666666666666554
Q ss_pred h
Q 047873 156 G 156 (464)
Q Consensus 156 ~ 156 (464)
.
T Consensus 156 ~ 156 (164)
T 3ro3_A 156 L 156 (164)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=5.1e-06 Score=61.44 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC---hhhHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA---RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS---VYVFNVL 135 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 135 (464)
+..++..+...|++++|+..|+.+.... |.+. .++..+..++...|++++|...++++++..+. + ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 4456677888889999999998887764 2233 46777888888888888888888888876644 3 5567777
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|++++|...|+.+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888765
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.44 E-value=1.4e-07 Score=86.89 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--------------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..+..+...|.+.|++++|+..|++......... ..+|..+..++.+.|++++|+..++++++..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 4566667777777777777777777665431111 23344444444444444444444444444333
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. +..++..+..+|...|++++|...|++..+
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 344444444444444444444444444443
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=1.4e-05 Score=75.26 Aligned_cols=173 Identities=9% Similarity=-0.076 Sum_probs=129.6
Q ss_pred hCCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC----------hhHHHHHHHHHH
Q 047873 19 AHKM-HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF----------LDDAIQCFRLLR 86 (464)
Q Consensus 19 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----------~~~A~~~~~~~~ 86 (464)
+.|. .++|++.+.+++ ...|+. .+|+.-..++...|+ ++++++.++.+.
T Consensus 40 ~~~~~~eeal~~~~~~l-------------------~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 40 QAGELDESVLELTSQIL-------------------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp HTTCCSHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH-------------------HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 3444 467788888888 456777 899988888888887 899999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCC--ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCCC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTN--LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG-KIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~ 163 (464)
+.+ |-+..+|..-...+.+.+ +++++++.++++++..+. +..+|+.-..++...| .++++++.++++.+.+ +-+
T Consensus 101 ~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n 177 (567)
T 1dce_A 101 RVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 177 (567)
T ss_dssp HHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCC
T ss_pred HhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCC
Confidence 886 457778888888888888 669999999999998776 8888988888888888 8888999988888775 446
Q ss_pred cccHHHHHHHHHhc--------------CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 164 AVSFNTLINGHCKA--------------KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 164 ~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
...|+.....+.+. +.++++++.++...... +-+...|..+...+.+.++
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 77787777766653 33566666666665543 3345556655555555554
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=1.3e-06 Score=63.55 Aligned_cols=87 Identities=8% Similarity=-0.119 Sum_probs=64.1
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 71 DLGFLDDAIQCFRLLRKHY--FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
..|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..++++++..+. +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888887763 2334567778888888888888888888888887665 677778888888888888888
Q ss_pred HHHHHHHhhC
Q 047873 149 QMVFDEFGKR 158 (464)
Q Consensus 149 ~~~~~~~~~~ 158 (464)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877665
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=4.8e-06 Score=64.29 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=77.3
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHCC----CCC-CH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIE-LD----NVAFTALISGFCRGGKVVEAERMLREMLKVG----LKP-DD 345 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 345 (464)
.++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.. .++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566677777778888888877776653111 01 1356666667777777777777777665421 000 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHL-PAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
..+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556666666777777777766665542 110 112345555666666666666666666654
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.8e-06 Score=79.82 Aligned_cols=125 Identities=12% Similarity=-0.020 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..+...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|+..++++++..+. +..++..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34445556778999999999999998875 446788999999999999999999999999987654 7888999999999
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH--HHhcCChhHHHHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLING--HCKAKNLDEGFRLKS 188 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 188 (464)
..|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988763 2345566666655 778899999999988
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=6.3e-05 Score=68.84 Aligned_cols=186 Identities=8% Similarity=-0.034 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CH----HHH
Q 047873 255 DMKEARKIVDEMCTNGLNPDK----------------ITYTILLDGFCKEGDLESALDIRKEMIKRGIEL-DN----VAF 313 (464)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~ 313 (464)
++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+.+..... +. .+.
T Consensus 19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 98 (434)
T 4b4t_Q 19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLK 98 (434)
T ss_dssp CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 347999999999875432211 236778999999999999999998876532111 11 233
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CC---CcCHHHH
Q 047873 314 TALISGFCRGGKVVEAERMLREMLKV----GLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSD--GH---LPAVETY 383 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~ 383 (464)
+.+...+...|+++.|..+++..... +..+ -..++..+...|...|++++|..+++++... +. ......+
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 34444556678999999999887642 2222 2457788999999999999999999988654 11 1235678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 384 NALMNGLCKHGQLKNANMLLDTMLDL--GVVPD----DITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 384 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...+.+
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88999999999999999999887631 11112 24566667777889999998877654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=7.7e-06 Score=63.41 Aligned_cols=98 Identities=9% Similarity=-0.116 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH--------Y---------FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
..+...+..+.+.|++++|+..|.+.... . .+.....+..+..++.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 56677888899999999999999988765 1 011234566666667777777777777777776
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+. +...|..+..++...|++++|...|+.....
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6543 5666666777777777777777777766655
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=6.4e-06 Score=73.38 Aligned_cols=98 Identities=8% Similarity=-0.076 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC---------------CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHY---------------FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
..+..+...+.+.|++++|++.|++..+.. .+....++..+..++.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677888888999999999988877620 01123444555555555555555555555555543
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+. +..++..+..+|...|++++|.+.|++..+.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 4445555555555555555555555555443
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.5e-06 Score=60.38 Aligned_cols=91 Identities=9% Similarity=-0.017 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
++..+|..++..+...|++++|++.|++++. ..|+. .++..+..++.+.|++++|++.|+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 62 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT-------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3567788888888888888888888888873 23433 777788888888888888888888
Q ss_pred HHHhCCCCCC------hhcHHHHHHHHHcCCChhhHHH
Q 047873 84 LLRKHYFRIP------ARGCRCLIDRMMRTNLPTVTLG 115 (464)
Q Consensus 84 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 115 (464)
+..... +.+ ...+..+..++...|+.+.|+.
T Consensus 63 ~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 63 QGLRYT-STAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHTSC-SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHhC-CCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 877764 222 3344444555555555544443
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.19 E-value=7.2e-06 Score=56.19 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+...|..+...+...|++++|++.|++++. ..|+ ..++..+...+.+.|++++|++.|++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh-------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566666666666666666666666653 1222 25566666666666666666666666
Q ss_pred HHhCCCCCChhcHHHHHHHH
Q 047873 85 LRKHYFRIPARGCRCLIDRM 104 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~ 104 (464)
..... |.+...+..+...+
T Consensus 69 a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 69 ALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHH
Confidence 65553 22344444444443
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=0.0001 Score=69.52 Aligned_cols=176 Identities=9% Similarity=-0.057 Sum_probs=142.4
Q ss_pred HhcC-ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------hhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 70 VDLG-FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL----------PTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 70 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+.| ..++|++.++.+.... |-...+|+.-..++...|+ ++++++.++.+++..++ +..+|+.-..+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344 4568899999999886 4466778777777777777 89999999999998876 89999999999
Q ss_pred HHhcC--ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---
Q 047873 139 LCKEG--KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK-NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE--- 212 (464)
Q Consensus 139 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 212 (464)
+.+.+ +++++++.++++.+.+ +.+..+|+.....+.+.| .++++++.++++++.. +-+..+|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 99999 7799999999999886 457888988888888888 8999999999998875 34788888877776663
Q ss_pred -----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 213 -----------NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 213 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.++++++.+++.....+. +...|..+-..+.+.++.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4578999999998877533 677888877777776664
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.18 E-value=1.7e-05 Score=59.82 Aligned_cols=97 Identities=12% Similarity=-0.044 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------Ch-----hcHHHHHHHHHcCCChhhHHHHHHHHHhc-----
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI------PA-----RGCRCLIDRMMRTNLPTVTLGFYLEILDY----- 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 123 (464)
..+......+.+.|++++|+..|++..+..+.. +. .+|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667778889999999999999988764221 11 26677777777777777777777777765
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 124 --GYSPSVYVF----NVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 124 --~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
.+. +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 433 45555 6666666677777777776666654
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.14 E-value=7.4e-06 Score=72.11 Aligned_cols=148 Identities=6% Similarity=-0.167 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|+..|++..... |+.. .+...++..++...+ ....|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 345556666667777777777777665542 1111 111222233322211 113778899999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCChhHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING-LCKENRLDDA 218 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 218 (464)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+ ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 4467889999999999999999999999988653 2244455555555 3345667888
Q ss_pred HHHHHHHHHC
Q 047873 219 ELLLHEMCER 228 (464)
Q Consensus 219 ~~~~~~~~~~ 228 (464)
.+.|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8999988765
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=6.6e-06 Score=75.66 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=92.1
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH-----Y 89 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 89 (464)
.+..+|++++|+.++++++.... .++- ..+|+. .+++.|+.+|...|++++|+.++++.... |
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~---------~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE---------PVFA--DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT---------TTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH---------HhcC--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 35679999999999999984221 1111 234445 88999999999999999999999886532 2
Q ss_pred C--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-----cCCC-C-ChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 90 F--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-----YGYS-P-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 90 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. |....+++.+...|...|++++|..+++++++ .|.. | ...+.+.+..++.+.+.+++|+.+|..+.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11245678888888899999999888888764 3433 1 123344566666677778888887777754
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=1.1e-05 Score=58.35 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=55.1
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
...|+. .++..+...|...|++++|+..|++....+ +.+...+..+..++...|++++|...|+++++.
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555 888888888888999999999998888775 445677888888888888888888888887764
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=3e-06 Score=60.77 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC------hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS------VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 133 (464)
..+..+...+...|++++|++.|++..... |.+...+..+..++...|++++|+..++++++..+. + ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 567778888888888888888888888775 446777888888888888888888888888876543 3 44555
Q ss_pred HHHHHHHhcCChhhHHHHHHH
Q 047873 134 VLMHKLCKEGKIKDAQMVFDE 154 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~ 154 (464)
.+..++...|+++.|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 566666666666665554443
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.04 E-value=1.7e-05 Score=55.61 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.++.+|..++.+|...|++++|++.|++++. ..|+. .+|..+..+|...|++++|++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVE-------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55677788888888888888888888888773 33444 67777788888888888888887
Q ss_pred HHHHhC
Q 047873 83 RLLRKH 88 (464)
Q Consensus 83 ~~~~~~ 88 (464)
++..+.
T Consensus 65 ~~al~l 70 (100)
T 3ma5_A 65 AQGIEV 70 (100)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776544
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=0.00011 Score=54.88 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----EGKIKDAQ 149 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 149 (464)
++++|++.|++..+.+ .+. +. +...+...+..++|..+|++..+.| ++..+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666665554 112 22 4444444455555666665555543 44455555555554 45555555
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhC
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 193 (464)
+.|++..+.| +...+..+...|.. .+++++|..+|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555554443 33444444444444 44455555555544443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=3.3e-05 Score=71.01 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=90.9
Q ss_pred HHHhCCChHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHC-----CC-CC-CHhhHH
Q 047873 284 GFCKEGDLESALDIRKEMIKR-----GI-EL-DNVAFTALISGFCRGGKVVEAERMLREMLKV-----GL-KP-DDATYT 349 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 349 (464)
.+...|++++|+.++++.++. |. .| ...+++.+..+|...|++++|..++++.+.. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455788999999988887754 11 11 2457888888999999999999998887642 21 12 245688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 350 MVIDCFCKNGDTKTGFRLLKEMRSD-----GH-LP-AVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 350 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.|...|...|++++|..++++..+- |. .| ...+.+.+..++...+++++|..+++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988887652 21 12 234456667778888889999999988875
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=5.2e-05 Score=51.74 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 667777888888888888888888877764 345667777777888888888888888887776543 556666665555
Q ss_pred Hh
Q 047873 140 CK 141 (464)
Q Consensus 140 ~~ 141 (464)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.96 E-value=0.00045 Score=51.52 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHH
Q 047873 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGF 365 (464)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 365 (464)
++++|...|++..+.+.. ... +...|...+.+++|..+|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 345555555555555421 221 4444444455555555555555543 44455555555555 55566666
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047873 366 RLLKEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 410 (464)
+.|++..+.+ ++..+..+...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655542 44455555555555 556666666666655543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=1.6e-05 Score=59.91 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=68.7
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCh----------hHHHHHHHHHH
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFL----------DDAIQCFRLLR 86 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~~ 86 (464)
.+-+.+++|++.+++++ ...|+. ..|..+..++...+++ ++|+..|++..
T Consensus 13 ~r~~~feeA~~~~~~Ai-------------------~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL 73 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTY-------------------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence 34567899999999988 345655 9999999999988875 48889998888
Q ss_pred hCCCCCChhcHHHHHHHHHcCC-----------ChhhHHHHHHHHHhcC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTN-----------LPTVTLGFYLEILDYG 124 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~ 124 (464)
+.+ |-...+|..+..+|...| ++++|++.|+++++..
T Consensus 74 ~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 74 LID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 886 446778888888887764 7888888888888755
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.88 E-value=2.9e-05 Score=58.42 Aligned_cols=98 Identities=7% Similarity=-0.066 Sum_probs=73.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChh----------hHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT----------VTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+.+.+++|++.++...+.. |.+...|..+..++...++++ +|+..|++.++..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45678889999999988886 557888888888888877654 888888888887765 777888888888
Q ss_pred HhcC-----------ChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 140 CKEG-----------KIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 140 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
...| ++++|.+.|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 7764 677777777777765 45554444333
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=0.0001 Score=53.08 Aligned_cols=79 Identities=10% Similarity=-0.038 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 77 DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
+|++.|++..+.. +.+...+..+...+...|++++|+..++++++..+. +...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666655554 334555666666666666666666666666655443 45555666666666666666666666554
Q ss_pred h
Q 047873 157 K 157 (464)
Q Consensus 157 ~ 157 (464)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.81 E-value=6.1e-05 Score=52.66 Aligned_cols=65 Identities=12% Similarity=-0.042 Sum_probs=54.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
+..++..+...|.+.|++++|++.|++..+.+ |.+..+|..+..++...|++++|...|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33788888899999999999999999988876 445678888888899999999999988887754
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.64 E-value=0.00055 Score=46.72 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKM---HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDA 78 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 78 (464)
.|.++..|..+..++...++ .++|..++++++ ...|+. .++..+...+.+.|++++|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL-------------------~~dp~~~rA~~~lg~~~~~~g~y~~A 62 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL-------------------QLEPYNEAALSLIANDHFISFRFQEA 62 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------------HHCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 46778888888888865544 688888888888 345555 8888888888888888888
Q ss_pred HHHHHHHHhCC
Q 047873 79 IQCFRLLRKHY 89 (464)
Q Consensus 79 ~~~~~~~~~~~ 89 (464)
+..|+.+...+
T Consensus 63 i~~w~~~l~~~ 73 (93)
T 3bee_A 63 IDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhhC
Confidence 88888888775
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.00043 Score=60.02 Aligned_cols=72 Identities=10% Similarity=-0.051 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (464)
++.++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 45555555555555566666666666665553 45445555555555666666666666655544 34444443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.54 E-value=5.2e-05 Score=52.85 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-h-hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-L-VLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
.+..+...|++++|++.|++++. ..|+. . ++..+..+|...|++++|++.|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ-------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44566677777777777777763 23444 5 67777777777777777777777776664
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.51 E-value=1e-07 Score=83.86 Aligned_cols=90 Identities=7% Similarity=-0.074 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----------CCCcCHHHHHHHHHHHHhcCCHHHHHH------------HHHH
Q 047873 348 YTMVIDCFCKNGDTKTGFRLLKEMRSD----------GHLPAVETYNALMNGLCKHGQLKNANM------------LLDT 405 (464)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~------------~~~~ 405 (464)
.+-|+.++...=|...+.++|++.-.. ...-+...-.++-..|....+++.-.. +.++
T Consensus 368 L~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~r 447 (624)
T 3lvg_A 368 LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQR 447 (624)
T ss_dssp SHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHH
T ss_pred HHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHH
Confidence 345555555555555555555442110 011123333455566667767665433 2333
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 406 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+.+ .+-......-...|.+.++|+++..+.++
T Consensus 448 LEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk 479 (624)
T 3lvg_A 448 LEK---HELIEFRRIAAYLFKGNNRWKQSVELCKK 479 (624)
T ss_dssp HHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSST
T ss_pred Hhh---CchHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 332 23444455555667788888888777665
No 213
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.44 E-value=0.0024 Score=46.75 Aligned_cols=104 Identities=8% Similarity=-0.011 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHH------HH
Q 047873 4 RLTLHAYSTMVHFLVAHKMH------SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIV------YV 70 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~ 70 (464)
|.|.++|-..+..+...|+. ++.++.|++++. .++|+. ..|...+.. +.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia------------------~~Pp~k~~~wrrYI~LWIrYA~~~ 71 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE------------------ALPPDKYGQNESFARIQVRFAELK 71 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH------------------HSCGGGGTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH------------------cCCccccccHHHHHHHHHHHHHHH
Confidence 67899999999999999999 888888888875 334433 222222221 23
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
..++.++|.++|+.+...+ .--...|......-.+.|+...|..++.+.+..++.
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4477888888888776542 212455555555566777888888888777776655
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.44 E-value=0.0015 Score=56.73 Aligned_cols=144 Identities=14% Similarity=0.026 Sum_probs=79.4
Q ss_pred CCCCHHhHHHHHHHHH--hCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCh-HHHH---HHHHHHH
Q 047873 271 LNPDKITYTILLDGFC--KEG---DLESALDIRKEMIKRGIELDNVAFTALISGFCR----GGKV-VEAE---RMLREML 337 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~-~~a~---~~~~~~~ 337 (464)
.+.+...|...+++.. ..+ +..+|..+|++.++..+. ....+..+..++.. .+.. .... ..++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3456667777766543 222 346788888888887543 34455544444431 1011 1111 1111111
Q ss_pred H-CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 047873 338 K-VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416 (464)
Q Consensus 338 ~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 416 (464)
. ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1113455666666665666677777777777777653 56666666666677777777777777776653 45555
Q ss_pred HHH
Q 047873 417 TYN 419 (464)
Q Consensus 417 ~~~ 419 (464)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.00027 Score=63.87 Aligned_cols=93 Identities=14% Similarity=-0.006 Sum_probs=67.6
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-C
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH-----YF-R 91 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 91 (464)
..|++++|+++|++++.... .++- ..+|+. .+++.|+.+|...|++++|+.++++.... |. .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~---------~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS---------SVFE--DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT---------TTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhh---------CccC--hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 46889999999999884211 1110 234444 88899999999999999999999887542 21 1
Q ss_pred C-ChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 92 I-PARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 92 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
| ...+++.+...|...|++++|..+++++++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1 235577888888888888888888887764
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.38 E-value=0.00032 Score=63.42 Aligned_cols=76 Identities=11% Similarity=-0.033 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
|+.|....+++.|+.+|...|++++|+.++++++. ++..++- ..+|+. .+++.|+..|...|++++|+
T Consensus 334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~---------i~~~~lG--~~Hp~~a~~l~nLa~~~~~qg~~~eA~ 402 (433)
T 3qww_A 334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK---------PYSKHYP--VYSLNVASMWLKLGRLYMGLENKAAGE 402 (433)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HHHHHSC--SSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------HHHHHcC--CCChHHHHHHHHHHHHHHhccCHHHHH
Confidence 56677889999999999999999999999999983 3343332 445666 89999999999999999999
Q ss_pred HHHHHHHh
Q 047873 80 QCFRLLRK 87 (464)
Q Consensus 80 ~~~~~~~~ 87 (464)
.++++...
T Consensus 403 ~~~~~Al~ 410 (433)
T 3qww_A 403 KALKKAIA 410 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998654
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.0017 Score=58.83 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=71.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH--- 88 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 88 (464)
.+..+...|++++|++++++++...... + ...+|+. .+++.++.+|...|++++|+.++++....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~---------l--g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSER---------L--PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCC---------C--CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCc---------C--CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Confidence 3455668999999999999998532210 0 0123333 78899999999999999999999887532
Q ss_pred --CC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 89 --YF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 89 --~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
|. |....+++.+...|...|++++|..+++++++
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 21 11235577888888888888888888887664
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.20 E-value=0.0029 Score=43.66 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=53.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChh-cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR-GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+..+.+.|++++|++.|+++.+.. +.+.. .+..+..++...|++++|...|+++++..+. +..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHH
Confidence 4566788899999999999988875 44566 8888889999999999999999999887654 44433
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.10 E-value=0.0036 Score=42.61 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=43.3
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 58 PGLVLDALMIVYVDLGF---LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
+...+..+..++...++ .++|..+|++....+ |-+..+...+...+.+.|++++|+..|+++++..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33566666666543333 577777777777665 44566666667777777777777777777776553
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.00096 Score=60.38 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
|..+....+++.|+.+|...|++++|++++++++. ++..++- ..+|+. .+++.|...|...|++++|+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------i~~~~lg--~~Hp~~a~~l~nLa~~~~~~g~~~eA~ 391 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------PYRIFFP--GSHPVRGVQVMKVGKLQLHQGMFPQAM 391 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HHHHHSC--SSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------hHHHHcC--CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45667788999999999999999999999999983 3343332 455666 88999999999999999999
Q ss_pred HHHHHHHh
Q 047873 80 QCFRLLRK 87 (464)
Q Consensus 80 ~~~~~~~~ 87 (464)
.++++...
T Consensus 392 ~~~~~Al~ 399 (429)
T 3qwp_A 392 KNLRLAFD 399 (429)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.014 Score=40.67 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+-+...+..|+..+...|++..|...|+.++....... ...+ ...++..+..+|.+.|+++.|+..+
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE------------ISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC------------CCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45778899999999999999999999999985321000 0112 2378888999999999999999999
Q ss_pred HHHHhCC
Q 047873 83 RLLRKHY 89 (464)
Q Consensus 83 ~~~~~~~ 89 (464)
+++....
T Consensus 70 ~~al~l~ 76 (104)
T 2v5f_A 70 KKLLELD 76 (104)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9988764
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.81 E-value=0.02 Score=40.99 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=71.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
+.-.|..++..++..+..+++...++..+.=.++.+....--..++..+... ...+|+....+..+-.+- .+.
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-----~~s 91 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-----TLN 91 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----CCC
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-----chH
Confidence 4458999999999999887655555555555555441111000122222221 134455555554443321 123
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+.....+..+...|+-+...+++..++.. .+|++.....+..+|.+.|+..+|.+++.+..++|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444555555555555555555554332 234555555566666666666666666665555553
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.80 E-value=0.00022 Score=63.25 Aligned_cols=384 Identities=11% Similarity=0.053 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
.+..|+.|+.++...|...+|++-|-++ .|...|..++.+..+.|++++-++.+.-.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----------------------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----------------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----------------------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4567888999999999999998876443 23356677778888888888888887754
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC-------
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR------- 158 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 158 (464)
.+.. -++..=..++.+|++.++..+-.+.+ ..|+..-...+..-|...|.++.|.-+|..+..-
T Consensus 110 Rk~~--ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstL 180 (624)
T 3lvg_A 110 RKKA--RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 180 (624)
T ss_dssp STTC--CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSS
T ss_pred HHHh--cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHH
Confidence 4432 23444567778888888776544332 1256656667777777777777777766654211
Q ss_pred -------------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 159 -------------GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 159 -------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
.-..+..||..+-.+|...+.+.-|.-.--.++-. ++ ....++..|-..|.+++.+.+++.-
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 01236678888888888888877766554444321 11 1233566677888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCC------CCHHhHHHHHHHHHhCCChHHHHHHH
Q 047873 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLN------PDKITYTILLDGFCKEGDLESALDIR 298 (464)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (464)
... -......|+-|.-.|++-.- ++..+.++....+ +++ .....|..++-.|.+-.+++.|....
T Consensus 256 lgl-ErAHmGmFTELaILYsKY~P-------eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM 327 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKFKP-------QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 327 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSSCT-------THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT
T ss_pred hCC-CchhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH
Confidence 633 13456677777777776532 2333333322211 111 12234666666666666666554321
Q ss_pred -------------HHHHHcCCCCCHHHHHH---------------HHHHHhccCChHHHHHHHHHHHHC----------C
Q 047873 299 -------------KEMIKRGIELDNVAFTA---------------LISGFCRGGKVVEAERMLREMLKV----------G 340 (464)
Q Consensus 299 -------------~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~----------~ 340 (464)
.++..+ ..+...|-. |+.++...=+..++.+++++.-.. .
T Consensus 328 i~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq 405 (624)
T 3lvg_A 328 MNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 405 (624)
T ss_dssp TSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCC
T ss_pred HhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHH
Confidence 111111 123344443 444444344455555555442210 0
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHH------------HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH---
Q 047873 341 LKPDDATYTMVIDCFCKNGDTKTGFR------------LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT--- 405 (464)
Q Consensus 341 ~~~~~~~~~~ll~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--- 405 (464)
-..+..+-.++-..|....|++.-.. +-+++.+. +-...-..-...|.+.++|++++.+.++
T Consensus 406 ~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~KkDkl 482 (624)
T 3lvg_A 406 NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKKDSL 482 (624)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSSTTCC
T ss_pred HhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHhccc
Confidence 01122333445556666666554332 12222221 1222223444556677777777664422
Q ss_pred ---HHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 406 ---MLD-LGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 406 ---~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 439 (464)
+.+ ....-+...-.-|++-+...|+.+-....+-
T Consensus 483 ykDAietAa~S~~~elaeeLL~yFv~~g~~EcF~a~Ly 520 (624)
T 3lvg_A 483 YKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLF 520 (624)
T ss_dssp TTGGGTTTTTCCCTTHHHHHHHHHHHHCSTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 221 1223455555666666666666665444443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.78 E-value=0.0082 Score=44.63 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG---DTKTGFRLLKEMRSDGHLP--AVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 399 (464)
....+.+-|.+....+ .++..+...+..++++++ +.++++.++++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666655 367777777777777777 5667888888777753 23 234444566667788888888
Q ss_pred HHHHHHHHhCCCCCCH
Q 047873 400 NMLLDTMLDLGVVPDD 415 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~ 415 (464)
.+.++.+++. .|+.
T Consensus 91 ~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 8888887763 5543
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.63 E-value=0.033 Score=46.36 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHHH-HHh--cCCcccccCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhC-----CChHHHHHHHHHHH
Q 047873 234 DVIFTTLIDG-HCK--NGRIDMAGDMKEARKIVDEMCTNGLNPD---KITYTILLDGFCKE-----GDLESALDIRKEMI 302 (464)
Q Consensus 234 ~~~~~~l~~~-~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~ 302 (464)
...|..++.+ +.. .+.+...+....|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.+
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 4445555443 233 35555556677888888888885 454 56788888888884 89999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHHCCCC
Q 047873 303 KRGIELDNVAFTALISGFCRG-GKVVEAERMLREMLKVGLK 342 (464)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 342 (464)
+.++.-+..++......++.. |+.+.+...+++.+.....
T Consensus 232 ~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 232 RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 886543477777888888874 8999999999999987544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.1 Score=39.85 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=94.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH
Q 047873 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 363 (464)
...+.|+++.|.++.+.+ -+...|..+.......|+++-|...|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999997765 2789999999999999999999999988642 4455556666788877
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 047873 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL 443 (464)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 443 (464)
-.++-+.....| -++.....+.-.|+++++.+++.+.- --|... ......|-.+.|.+++++.|+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~------~~A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPLAY------AVAKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHH------HHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHH------HHHHHcCcHHHHHHHHHHhCC
Confidence 776665555543 14566677788999999999996642 222111 112246777889999888764
Q ss_pred C
Q 047873 444 V 444 (464)
Q Consensus 444 ~ 444 (464)
.
T Consensus 144 ~ 144 (177)
T 3mkq_B 144 D 144 (177)
T ss_dssp C
T ss_pred c
Confidence 3
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.49 E-value=0.089 Score=52.28 Aligned_cols=131 Identities=12% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
..++..+.+.|.+++|+++.+. . ..-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 6677778888999888877631 1 11133445678999998876432 3778899999999999
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
++++.|.+.|..+.. |..+...+...++.+...++.+.....|. ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 999999999987642 45566666667777776666666555431 233444566677777777777
Q ss_pred HHHH
Q 047873 223 HEMC 226 (464)
Q Consensus 223 ~~~~ 226 (464)
.++.
T Consensus 760 ~~~~ 763 (814)
T 3mkq_A 760 IKSQ 763 (814)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6653
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.46 E-value=0.024 Score=39.43 Aligned_cols=64 Identities=8% Similarity=-0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHY------FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
...++..+.+.|+++.|..+|+...+.. .......+..+..++.+.|+++.|+..++++++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3456666666677777777776655431 012334455566666666666666666666665443
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.35 E-value=0.029 Score=46.74 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCCCC--h-hhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcC
Q 047873 54 GTHLP--G-LVLDALMIVYVDL-----GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYG 124 (464)
Q Consensus 54 ~~~~~--~-~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 124 (464)
.+.|+ . .+|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++++...
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 55677 3 7899999999884 89999999999998886322467778888888874 88999999999999877
Q ss_pred CC--CChhhHHHHH
Q 047873 125 YS--PSVYVFNVLM 136 (464)
Q Consensus 125 ~~--~~~~~~~~l~ 136 (464)
+. |+....+.+.
T Consensus 271 p~~~P~~~lan~~~ 284 (301)
T 3u64_A 271 PESVPHNKLLVILS 284 (301)
T ss_dssp GGGCSSCHHHHHHH
T ss_pred CCCCCChhHHHHHH
Confidence 66 5554444433
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.28 E-value=0.14 Score=50.91 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=73.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+......|++++|.++.+.+ .+...|..+...+.+.++++.|...|.++.. +..+...+...|+.
T Consensus 659 f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~ 723 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNK 723 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCH
T ss_pred eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCH
Confidence 44567789999999987542 3567899999999999999999999998742 33455556667777
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
+...++.+.....| -++....+|.+.|++++|.+++..+.
T Consensus 724 ~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 724 EGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 76666655555443 23444455556666666666665543
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.26 E-value=0.03 Score=41.61 Aligned_cols=83 Identities=10% Similarity=-0.092 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC---ChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN---LPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
...+.+.|.+....+ +++..+...+..++++++ +.++++.+++.+.+.. +..+...+-.+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555554 356666666666777766 4447777777777654 21123344445556677777777777
Q ss_pred HHHHHhhC
Q 047873 151 VFDEFGKR 158 (464)
Q Consensus 151 ~~~~~~~~ 158 (464)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777665
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.17 E-value=0.1 Score=38.36 Aligned_cols=97 Identities=7% Similarity=0.020 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCh-hcHHHHHHH------HHcCCChhhHHHHHHHHHhcCCC
Q 047873 60 LVLDALMIVYVDLGFL------DDAIQCFRLLRKHYFRIPA-RGCRCLIDR------MMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
.+|-..+...-+.|+. ++.+++|++....- ||+. ..|...+.. +...++.++|.++|+.+++..-.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence 6777677767666777 77777777776642 3332 111111111 11234555555555555443221
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
-...|....+.-.+.|++..|.+++......
T Consensus 93 -FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 93 -FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp -BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 2444444444444555555555555554444
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.34 Score=37.00 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=21.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 119 (464)
.++|+++.|.++.+.+ .+...|..+.......|+++-|...|.+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555554432 1334455555555555555555544443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.30 E-value=0.07 Score=38.11 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHH
Q 047873 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT---GFRLLKEMRSDGHLP--AVETYNALMNGLCKHGQLKNANM 401 (464)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 401 (464)
..+..-|.+....| .++..+--.+..++.+.+.... ++.+++.+.+.+ .| .-...-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33334444333333 2444444444555555444333 445555444432 11 11122233344455555555555
Q ss_pred HHHHHHh
Q 047873 402 LLDTMLD 408 (464)
Q Consensus 402 ~~~~~~~ 408 (464)
.++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.17 E-value=2.8 Score=41.54 Aligned_cols=266 Identities=13% Similarity=-0.027 Sum_probs=145.0
Q ss_pred HHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 047873 173 GHCKAKNLDEGFRLKSVMEGSG--MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL-------TPNDVIFTTLIDG 243 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 243 (464)
+.+..|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556788888888777665421 122233333444455566666678887777654311 0112222333334
Q ss_pred HHhcCCcccccCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK--ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 244 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
+.-.|.-+ +++...+..+....- +.. ..-..+...+...|+.+....++..+.+.. .-+..-...+.-++.
T Consensus 463 la~~GS~~-----eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSAN-----IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCC-----HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred HHhcCCCC-----HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhh
Confidence 44344433 577777777766421 111 122234445667788888888888777642 112222333444455
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 322 RGGKVVEAERMLREMLKVGLKPDDATY--TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
-.|+.+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 7899999999988887642 2222222 23445677888887777798888875 222344334444455557777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCchh
Q 047873 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-EDFDKLQSEKGLVSDYA 448 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~p~~~ 448 (464)
.++++.+.+.+ .|....-..+.-+....|+. .++...+..+--.++..
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 77777666532 33333333333333344444 44666666543344433
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.08 E-value=0.08 Score=37.80 Aligned_cols=84 Identities=11% Similarity=-0.087 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhh---HHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV---TLGFYLEILDYGYS-PSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
....+.+-|......+ +++..+-..+..++.++++... ++.+++.+.+.+.+ ......-.|.-++.+.|+++.|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444555444434 3555565566666666666555 66666666654311 12222334455566666666666
Q ss_pred HHHHHHhhC
Q 047873 150 MVFDEFGKR 158 (464)
Q Consensus 150 ~~~~~~~~~ 158 (464)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.63 E-value=0.61 Score=41.44 Aligned_cols=117 Identities=16% Similarity=0.078 Sum_probs=60.6
Q ss_pred CHHHHHHHHHH---HHhCCChHHHHHHHHHHHHhc-C-CCCh----------HHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 6 TLHAYSTMVHF---LVAHKMHSQARDLLHLIVSKK-G-MGSS----------ASLFASILETRGTHLPGLVLDALMIVYV 70 (464)
Q Consensus 6 ~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 70 (464)
|+..+..++.. ....|+.++|.+.+++++.-- | +-+. +.-+..... .+...++..+.
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~--------~a~~~~~~~~l 182 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKV--------LAHTAKAEAEI 182 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 34444444432 234689999999999887421 1 0000 000000000 23334455555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-----cCCCCChhh
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-----YGYSPSVYV 131 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 131 (464)
..|++++|+..++.+...+ |.+...+..++.++...|+..+|++.|+.+.+ .|..|.+.+
T Consensus 183 ~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6666666666666655554 44555666666666666666666666665432 355555544
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.15 E-value=1.1 Score=32.26 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=36.8
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 411 (464)
.......+..+..+|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555556666666666666554332 345555555666666666666666666666655554
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.76 E-value=0.28 Score=36.86 Aligned_cols=79 Identities=18% Similarity=-0.000 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCC--CChH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGM--GSSA-----SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
++..++.++...|+|.+|...|+++++.... .... .+-.+...+.....+.++-..+...|.+.|++++|+.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5677889999999999999999998742221 0100 00011111112223336667788888888888888888
Q ss_pred HHHHHh
Q 047873 82 FRLLRK 87 (464)
Q Consensus 82 ~~~~~~ 87 (464)
++.+..
T Consensus 145 Le~Ip~ 150 (167)
T 3ffl_A 145 LDGIPS 150 (167)
T ss_dssp HHTSCG
T ss_pred HhcCCc
Confidence 886543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.58 Score=45.23 Aligned_cols=50 Identities=18% Similarity=0.064 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 390 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
|...|+++.|+++.++.+.. .+-+..+|..|..+|...|+++.|+-.++.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34445555555555555542 122355555555555555555555555443
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.64 E-value=1.5 Score=45.34 Aligned_cols=139 Identities=11% Similarity=-0.085 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCC----ChHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG----SSASLFASILETRGT-HLPGLVLDALMIVYVDLGFLDDA 78 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 78 (464)
+.++.+...++.++...|++++|.+.|+++...-+.. ....-...+...... ..-..-|..++..+.+.|.++.+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 5566777889999999999999999999864211111 111112222221111 11124466677777777777777
Q ss_pred HHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 79 IQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
++.-....+...+.+ ...|..++..+...|++++|...+..+..... -...+..|+..+++.|.
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 766655544321111 12456666667777777777666655544322 23344445555555444
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.23 E-value=0.56 Score=41.70 Aligned_cols=70 Identities=13% Similarity=0.011 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK- 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 87 (464)
+...++.++.+.|++.+|+..+..++. ..+-+...+..++.+|.+.|+..+|+++|+.+.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~------------------~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF------------------EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677788899999999999988874 2344558999999999999999999999998754
Q ss_pred ----CCCCCChhc
Q 047873 88 ----HYFRIPARG 96 (464)
Q Consensus 88 ----~~~~~~~~~ 96 (464)
.|+.|++.+
T Consensus 235 L~~eLG~~P~~~l 247 (388)
T 2ff4_A 235 LADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHSCCCCHHH
T ss_pred HHHHhCCCCCHHH
Confidence 477777654
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.15 E-value=4.8 Score=36.44 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC--CCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHhh----CCCCCC--HHH
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR--GLHAT---AVSFNTLINGHCKAKNLDEGFRLKSVMEG----SGMRPD--VYT 201 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 201 (464)
..|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++++... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44556666666666666666665432 11100 22445556666666666666666665431 111121 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 202 YSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+...+..+...+++.+|-+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555666666666665555543
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.07 E-value=5 Score=36.36 Aligned_cols=165 Identities=8% Similarity=0.030 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HH
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGS--GMRPD---VYTYSALINGLCKENRLDDAELLLHEMCE----RGLTPN--DV 235 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~ 235 (464)
...|...+...|++.+|.+++..+... |.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356788899999999999999998643 21111 34577788999999999999999998743 222222 33
Q ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCCCHH----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 047873 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKI----TYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310 (464)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (464)
.+...+..+...+++. +|...|..+... ....+.. ....++.+..-.+....-..+..........++.
T Consensus 220 ~~~~~~~~~~~e~~y~------~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l 293 (445)
T 4b4t_P 220 YYNLLVKISLHKREYL------EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKL 293 (445)
T ss_dssp HHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHH
T ss_pred HHHHHHHHHHHhhhHH------HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccccccc
Confidence 4566777777788884 555555554321 1112222 2222222223333323333333333333233467
Q ss_pred HHHHHHHHHHhcc--CChHHHHHHHHHHH
Q 047873 311 VAFTALISGFCRG--GKVVEAERMLREML 337 (464)
Q Consensus 311 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 337 (464)
..+..++.+|... .+++.....|....
T Consensus 294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 294 ESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 7888888888654 45666666655443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.7 Score=44.67 Aligned_cols=128 Identities=15% Similarity=0.089 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC------CCCC-C
Q 047873 203 SALINGLCKENR-LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN------GLNP-D 274 (464)
Q Consensus 203 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~ 274 (464)
..++..+...++ ++.|..+|+++.+.....+......++..+...+..+ -+|.+++.+..+. ...+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~E-----v~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKE-----LDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhhhhhhhcccc
Confidence 445555555666 5789999999888732222222233344433333222 3555555554321 1111 1
Q ss_pred H----------HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 047873 275 K----------ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336 (464)
Q Consensus 275 ~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (464)
. .....-...+...|+++-|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 12233345567889999999999999887433 6889999999999999999999988876
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.96 E-value=0.69 Score=34.74 Aligned_cols=63 Identities=10% Similarity=-0.068 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC-------hhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHY-FRIP-------ARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
-.+..-+..+...|.++.|+-+.+.+.... ..++ ..++..+..++...+++.+|...|+++++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 445556667778899999998888765431 1122 13566777888899999999999998754
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.83 E-value=1.6 Score=31.35 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=33.6
Q ss_pred cCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 378 PAVETYNALMNGLCKHGQL---KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
|++.+--.+.+++.++... .+++.+++.+.+.+..-....+..+.-++.+.|++++|.++.+. +.+.|+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4444444455555555443 24455555555432111233344455555566666666666555 455554
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.73 E-value=1.5 Score=29.55 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.-+...-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555554443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.81 E-value=4.9 Score=41.58 Aligned_cols=144 Identities=11% Similarity=0.135 Sum_probs=88.8
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC----------------
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA---------------- 162 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 162 (464)
.++..+...+.++-+.++.... +.++...-.+..++...|++++|.+.|.+.... +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 4445555666666655543322 124444455677788888888888888764211 100
Q ss_pred -------CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047873 163 -------TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALINGLCKENRLDDAELLLHEMCERGLT 231 (464)
Q Consensus 163 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 231 (464)
-..-|..++..+.+.+.++.+.++-...++.....+ ...|..+.+.+...|++++|-..+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 011256677777788888888877766654321111 12467788888888888888888877766532
Q ss_pred CCHHHHHHHHHHHHhcCCc
Q 047873 232 PNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~ 250 (464)
-......++...+..+..
T Consensus 970 -r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHHHHhCCCh
Confidence 345666677666665543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.71 E-value=1.6 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
+.=+..+-++.+......|++....+.+++|.+.+++..|.++++-.+.. ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455566666666667778888888888888888888888888777642 222334455543
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.37 E-value=6.1 Score=33.55 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=11.1
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 047873 16 FLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~ 34 (464)
.....|++=+|-++|+.+.
T Consensus 22 ~~I~~G~yYEAhQ~~Rtl~ 40 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLRTIA 40 (312)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHHHHH
Confidence 3445666666666666554
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.86 E-value=3.6 Score=30.00 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 342 KPDDATYTMVIDCFCKNGD---TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 342 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.|+..+--.+..++.++.. ..+++.+++.+...+..-.-...--+.-++.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555555553 334555666655532211222333344556666666666666666665
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.43 E-value=3.2 Score=29.74 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.-+...-++.+...++.|++.+....+.+|.+.+|+..|.++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555555555666666666666666666666666666666666554
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.42 E-value=12 Score=35.42 Aligned_cols=257 Identities=11% Similarity=0.044 Sum_probs=119.3
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..-...+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+=..| ...+..+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence 3445556666667777666554332 22355555666777777888777777666665444 33556677777777
Q ss_pred HhcCChhH--HHHHHHHHhhCCCCCCHHHHHHHHHHH-----------Hh-cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 175 CKAKNLDE--GFRLKSVMEGSGMRPDVYTYSALINGL-----------CK-ENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 175 ~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
.+.|.+.. ...-++.+...| +...-..++... .. ..+...+...... ..++...-..+
T Consensus 147 ~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~ 218 (618)
T 1qsa_A 147 RASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMA 218 (618)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHH
Confidence 76665433 222233333322 111111111110 00 0111111111111 01122211111
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhH----HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY----TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (464)
..++.+..+ .+.+.|...+........ .+.... ..+.......+...++...+....... .+.....-.
T Consensus 219 ~~~~~rlar----~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 291 (618)
T 1qsa_A 219 AVAFASVAR----QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (618)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHh----cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHH
Confidence 112221111 123577777776654321 122222 222222223332445555555544432 233333333
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
+....+.|+++.|...|..|.... .....-.-.+..++...|+.++|..+|..+..
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444456677777777777765421 11233344556666677777777777777765
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.99 E-value=17 Score=36.29 Aligned_cols=354 Identities=11% Similarity=-0.011 Sum_probs=165.2
Q ss_pred hHHHHHHHHHhcCChhHH-HHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH--HHHHH
Q 047873 61 VLDALMIVYVDLGFLDDA-IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF--NVLMH 137 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~ 137 (464)
.-..+++++...|-..+. +.......... ......-....-++...|+.++++.++...+..+...+..+- ..+.-
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 335667777777754433 32222222211 111222233334566678888887777766542212233322 23333
Q ss_pred HHHhcCChhhHHHHHHHHhhCCC--C-----CCcccHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCH--HHHHHHHH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGL--H-----ATAVSFNTLINGHCKAKN-LDEGFRLKSVMEGSGMRPDV--YTYSALIN 207 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 207 (464)
..+..|..+++..++.......- . +....-..+.-+++-.|. -+++.+.+..+.... .+.. ..-..|..
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGl 498 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGL 498 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Confidence 34455555567776665544310 0 001111222223322332 234555555544321 1111 11223444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh--HHHHHH
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG--HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT--YTILLD 283 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 283 (464)
.+...|+.+....++..+.+.. +......+.-+ +...|+. +.+..+++.+... ..|.... ..++..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~------e~~~~li~~L~~~-~dp~vRygaa~algl 568 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ------ELADDLITKMLAS-DESLLRYGGAFTIAL 568 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG------GGGHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh------HHHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 5566777777777777666531 33333333333 3345554 3555666666543 1222211 123445
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh-H
Q 047873 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT-K 362 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~ 362 (464)
+|+..|+.....+++..+.... ..+......+.-++...|+.+.+..++..+.+.+ .|....-..+..+....|.. .
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~ 646 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQ 646 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCH
T ss_pred HhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcH
Confidence 6677788777777777777542 2233333334444555666666677776665543 34444334444444444443 5
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cC-------CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCH
Q 047873 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCK--HG-------QLKNANMLLDTMLD-LGVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g-------~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
++..++..+... ++..+-...+.++.. .| +....++.+..... ..-.++...-..+..+....|+-
T Consensus 647 ~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 647 SAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 677777777653 344433333333332 22 33344443333332 11223344445555555555543
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.56 E-value=9.2 Score=32.74 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=9.4
Q ss_pred HHhCCCh---HHHHHHHHHHH
Q 047873 17 LVAHKMH---SQARDLLHLIV 34 (464)
Q Consensus 17 ~~~~g~~---~~A~~~~~~~~ 34 (464)
....|++ =+|-++|+.+.
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~ 42 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVA 42 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHH
Confidence 3455666 45555555443
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.24 E-value=5.6 Score=28.56 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=45.0
Q ss_pred CCCCHHhHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 271 LNPDKITYTILLDGFCKEGDL---ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
..|+..+--....++.+..+. .+++.+++++.+.+..-....+-.+..++.+.|++++|....+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345666655566666666654 356777777776653223455666667777888888888888777765
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.81 E-value=4.2 Score=36.61 Aligned_cols=98 Identities=9% Similarity=-0.162 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHH--
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNV-- 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~-- 134 (464)
.+...++..|.+.|++++|.+.|.++..... ......+...++.+...+++..+...+.++...- ..++....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 5677788888888888888888888876422 2234667778888888888888888888765321 1123322221
Q ss_pred --HHHHHHhcCChhhHHHHHHHHhh
Q 047873 135 --LMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 135 --l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
-+..+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12234456888888887766544
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.31 E-value=3.4 Score=33.97 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+.+.|+.+++++....-++..+. |...-..+++.+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344566666666666666665554 6666666667777777777776666666554
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.17 E-value=17 Score=32.04 Aligned_cols=164 Identities=15% Similarity=0.070 Sum_probs=98.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHC--CCCCCHhhHH---
Q 047873 280 ILLDGFCKEGDLESALDIRKEMIKRGIELD-----NVAFTALISGFCRGGKVVEAERMLREMLKV--GLKPDDATYT--- 349 (464)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 349 (464)
.++..|...|++.+|..++..+.+.-...| ..++..-+..|...+++.++...+...... .+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 678899999999999999988887422212 234566677888999999999999887653 2223333222
Q ss_pred -HHHHHHH-hcCChHHHHHHHHHHHhC-C-CC-c---CHHHHHHHHHHHHhcCCHHHHHHHH-HH-HHhCCCCCCHHHHH
Q 047873 350 -MVIDCFC-KNGDTKTGFRLLKEMRSD-G-HL-P---AVETYNALMNGLCKHGQLKNANMLL-DT-MLDLGVVPDDITYN 419 (464)
Q Consensus 350 -~ll~~~~-~~~~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~l~~~~~~~g~~~~a~~~~-~~-~~~~~~~p~~~~~~ 419 (464)
.-...+. ..+++..|...|-+..+. . .. | +...|..+... . .++..+...++ .. .... ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 2233455 789999999888777543 1 11 1 12233333222 2 23323332322 12 1222 346666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc--CCCCch
Q 047873 420 ILLEGHCKHGNPEDFDKLQSEK--GLVSDY 447 (464)
Q Consensus 420 ~l~~~~~~~g~~~~a~~~~~~~--~~~p~~ 447 (464)
.++.+| ..+++.+..+++++. .+..|.
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~ 289 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKELAEDV 289 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTTTTTSH
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcCh
Confidence 777776 568999988888874 344454
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.84 E-value=2.1 Score=35.13 Aligned_cols=56 Identities=11% Similarity=-0.079 Sum_probs=48.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.+.+.|+.++|++....-++.. |.|......++..+|-.|++++|..-++-..+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4567899999999998888876 6678888899999999999999999998888754
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.86 E-value=18 Score=31.01 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+.++..-|.+.+++++|++++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 34445555666666666666543
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.46 E-value=18 Score=30.71 Aligned_cols=24 Identities=17% Similarity=-0.029 Sum_probs=12.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHH
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLK 187 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~ 187 (464)
+.....+...|.+.+++.+|...|
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHH
Confidence 344555555555555555555433
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.25 E-value=11 Score=34.01 Aligned_cols=63 Identities=6% Similarity=-0.142 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGS--GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+...+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35667777888888888888888877653 2223345666777888888888888888877654
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.48 E-value=12 Score=27.26 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=46.3
Q ss_pred CCCHHhHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 272 NPDKITYTILLDGFCKEGDL---ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
.|+..+-.....++.+..+. .+++.+++.+.+.+..-.....-.+..++.+.|++++|..+.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 46666666666677776654 356777777777654334455566667778888888888888888775
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.46 E-value=15 Score=26.42 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (464)
-+..+-++.+...++.|++....+.+++|.+.+++..|.++|+-+..+- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 4666666666666777788888888888888888888888887776652 223445555543
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.85 E-value=13 Score=24.98 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=54.2
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYN-ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 436 (464)
....++|..+-+-+...+ +..+.+ +-+..+...|++++|..+.+.+ ..||...|..+.. .+.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 346788988888887763 322222 2345678899999999988765 4789888877644 47888888888
Q ss_pred HHHhcC
Q 047873 437 LQSEKG 442 (464)
Q Consensus 437 ~~~~~~ 442 (464)
.+.++.
T Consensus 91 rL~~la 96 (116)
T 2p58_C 91 RLNRLA 96 (116)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776543
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.48 E-value=25 Score=27.41 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 047873 326 VVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378 (464)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 378 (464)
..++.++|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554443222 2334444444555555555555555555544444
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.99 E-value=13 Score=24.96 Aligned_cols=9 Identities=22% Similarity=0.542 Sum_probs=3.4
Q ss_pred cCChhhHHH
Q 047873 142 EGKIKDAQM 150 (464)
Q Consensus 142 ~~~~~~a~~ 150 (464)
.|++++|..
T Consensus 52 rG~Yq~Al~ 60 (115)
T 2uwj_G 52 QGRYQEALA 60 (115)
T ss_dssp TTCHHHHHG
T ss_pred chhHHHHHH
Confidence 333333333
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.44 E-value=36 Score=26.54 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC
Q 047873 288 EGDLESALDIRKEMIKRGIEL-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 344 (464)
.+......++|..|..+|+.. -...|......+...|++.+|..+|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444779999999999887654 356788888889999999999999999998876663
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.46 E-value=78 Score=30.01 Aligned_cols=140 Identities=9% Similarity=-0.046 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
++...+....... .+.......+....+.|++..|...|+.+...... ...-.--+..++...|+.++|..+|..+.
T Consensus 270 ~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 270 EQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4445555443322 22222333333344556666666666655442111 22223333445556666666666666654
Q ss_pred HC------------CCCC-------CH---h-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 047873 338 KV------------GLKP-------DD---A-----TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390 (464)
Q Consensus 338 ~~------------~~~~-------~~---~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (464)
.. |.++ +. . .-..-+..+...|....|...+..+... .+......+....
T Consensus 347 ~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a 423 (618)
T 1qsa_A 347 QQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYA 423 (618)
T ss_dssp TSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHH
Confidence 21 1110 00 0 0112234566677777787777777654 2333333444444
Q ss_pred HhcCCHHHHHHHH
Q 047873 391 CKHGQLKNANMLL 403 (464)
Q Consensus 391 ~~~g~~~~a~~~~ 403 (464)
...|.++.++...
T Consensus 424 ~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 424 FNNQWWDLSVQAT 436 (618)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCChHHHHHHH
Confidence 5566666665444
No 272
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.70 E-value=32 Score=31.52 Aligned_cols=67 Identities=6% Similarity=-0.125 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG---LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
...+|.+++.|...+.+++|.++..+..- . + ...++. .-+..++..+.-.+++.+|.+.|.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P--~------------~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--P--H------------TDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--C--T------------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--C--c------------ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678999999999999999998887630 0 0 001111 222345677788899999999988
Q ss_pred HHHhCC
Q 047873 84 LLRKHY 89 (464)
Q Consensus 84 ~~~~~~ 89 (464)
...+..
T Consensus 295 ~A~rka 300 (523)
T 4b4t_S 295 AAIRKA 300 (523)
T ss_dssp HHTSSC
T ss_pred HHHHhC
Confidence 877654
No 273
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=67.28 E-value=72 Score=28.77 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=19.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047873 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 212 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (464)
.++.+.|+.++.+|.+.|..|....-..+..+...-|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 35566666666666666555444444444444444443
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.55 E-value=27 Score=23.54 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=57.0
Q ss_pred cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
....++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+- .||...|..|.. .+.|-.+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 4467788888888877642 22222333456678999999998876654 788888876654 478888888888
Q ss_pred HHHHHHCC
Q 047873 222 LHEMCERG 229 (464)
Q Consensus 222 ~~~~~~~~ 229 (464)
+..+...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 87887765
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.45 E-value=28 Score=23.46 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047873 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223 (464)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 223 (464)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+- .||...|..|.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554431 11111222334445666666666554443 455555544433 24555555555555
Q ss_pred HHHHC
Q 047873 224 EMCER 228 (464)
Q Consensus 224 ~~~~~ 228 (464)
.+...
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 55444
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.10 E-value=6.7 Score=32.48 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=27.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047873 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY---TYSALINGLCKENRLDDAELLLHEMCERGLTP 232 (464)
Q Consensus 169 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 232 (464)
..+...++.|+.+.+..+++ .|..++.. .-...+...+..|+.+-+ +.+.+.|..+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~ 65 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADP 65 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC
Confidence 45556677788765555544 34333211 112244455566775443 4444445433
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=60.64 E-value=46 Score=26.82 Aligned_cols=89 Identities=10% Similarity=-0.017 Sum_probs=47.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCCC----ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKH--YFRI----PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
-++.+....++++|++++++.... +.+. ........+..-.....-.-+..+.+.+ .. .+++......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466788899999999998876543 1111 1111122222222222222233333333 22 3355555666677
Q ss_pred HHhcCChhhHHHHHHHHh
Q 047873 139 LCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~ 156 (464)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777776554
No 278
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=60.55 E-value=57 Score=25.27 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=26.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
+-.+.+.|+-++.+|++.|..|.-..-..++.+...-|.-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAd 59 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNAD 59 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 34677777777888877776665555555555665555443
No 279
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=60.17 E-value=58 Score=25.28 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=33.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
+-.+.+.|+-++.+|.+.| .|.-..-..++.+...-|..| ...+..|...++.....|.+.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAd-P~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGN-PAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGC-HHHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHhCCCH
Confidence 3466777777777777777 555555555555665555543 111223334444444445443
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.94 E-value=50 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047873 364 GFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413 (464)
Q Consensus 364 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 413 (464)
+.++|..|...++-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555666665554322 23445555555566666666666666666555554
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.90 E-value=61 Score=25.13 Aligned_cols=171 Identities=9% Similarity=-0.064 Sum_probs=103.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
.++..+-...+..+.+.|.. .+...+..+... ++.......+.++...+.. .+...+..++. .++..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHH
Confidence 35556666677777777763 445555444443 3556666667777777764 34444445543 3577777788
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 215 (464)
+.++.+.++.+.. ..+..+.. .++..+-...+.++...++.+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 8888888875544 44444443 457777777788888877654 4444555543 4566666777777777776
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (464)
.++...+..+.+. ++..+-...+.++..
T Consensus 173 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 173 ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 4555666666553 354444444444444
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.26 E-value=93 Score=27.00 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=40.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 047873 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD--TKTGFRLLKEMRSDGHLPAVETYNALMNGL 390 (464)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (464)
...++.-|...++.++|...++++..-.+. ...+...+..++-+.++ .+...+++..+...++-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 455666677777777777777776532111 12334444444444332 345666666666665554444433333333
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.13 E-value=66 Score=32.51 Aligned_cols=32 Identities=9% Similarity=-0.081 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
.|.++-+-..++++|...|++++|...|+++.
T Consensus 836 ~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 836 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 46677777899999999999999999999874
No 284
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.07 E-value=86 Score=26.59 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET 52 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (464)
+..-++..|.|+.|.+++++-+---.+.+-...|..+...
T Consensus 34 laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~ 73 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEG 73 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHH
Confidence 4556788999999999999987666677777777777764
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.35 E-value=67 Score=25.88 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=53.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHC--CCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 047873 315 ALISGFCRGGKVVEAERMLREMLKV--GLKP----DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388 (464)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (464)
.-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++.. .+++......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3477888889999999998877642 2221 112222223333333333344444455532 356666777778
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047873 389 GLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 389 ~~~~~g~~~~a~~~~~~~~ 407 (464)
.+.+.|+.++|.++|=+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8888888888888886654
No 286
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=55.83 E-value=11 Score=23.87 Aligned_cols=34 Identities=6% Similarity=0.179 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
|++|+++.+|+-+..++-+.--..++..+.+.+-
T Consensus 30 PnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 30 PNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8999999999999887666666677777776654
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.79 E-value=82 Score=25.61 Aligned_cols=18 Identities=22% Similarity=0.062 Sum_probs=9.1
Q ss_pred HHHHHhcCChhHHHHHHH
Q 047873 66 MIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~ 83 (464)
+....+.|+.+-...+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334456677654444443
No 288
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=55.50 E-value=73 Score=24.97 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=36.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
+-.+.+.|+-++.+|++.|..|.-..-..++.+...-|.-| ...+..|...++.....|.+.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAd-P~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLAD-PNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGS-TTHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHhCCCH
Confidence 34667777777778877776666555555666666555544 222334444455555555443
No 289
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.80 E-value=64 Score=23.49 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+.+.|..++. ....++..+...+..-.|.++++.+.+.++..+..|....+..+.+.|-+
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455555443 34445555555666677777777777766555665655556666666544
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.59 E-value=79 Score=24.48 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHhcCC
Q 047873 198 DVYTYSALINGLCKENR 214 (464)
Q Consensus 198 ~~~~~~~l~~~~~~~~~ 214 (464)
+...-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333334444444443
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.26 E-value=1.1e+02 Score=25.92 Aligned_cols=25 Identities=4% Similarity=0.341 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456777777888888888777754
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.93 E-value=1.5e+02 Score=29.87 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCc----ccHHHHHHHHHhcC
Q 047873 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA----VSFNTLINGHCKAK 178 (464)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 178 (464)
.-|..++..+-+.+.++.+.++-+...+.--..|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36678888888888888888887776654211222 25666666666544
No 293
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.46 E-value=64 Score=23.13 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+.+.|..++. ....++..+...+ .+-.|.++++.+.+.++..+..|....+..+.+.|-+
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3445544443 3344555555555 6677777777777766655665555555566655544
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.13 E-value=72 Score=23.57 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC
Q 047873 294 ALDIRKEMIKRGIEL-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343 (464)
Q Consensus 294 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (464)
..++|..|..+++.. -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555444322 12334444444445555555555555555443333
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.66 E-value=44 Score=25.00 Aligned_cols=71 Identities=11% Similarity=0.191 Sum_probs=44.5
Q ss_pred hhHHHHHHHHH-HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCChh
Q 047873 75 LDDAIQCFRLL-RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY--GYSPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 75 ~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 146 (464)
.+.+++-+.+. .+.|...+. ....++..+...+..-.|.++++.+.+. ++..+..|...-+..+.+.|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455544443 344655543 4556667777777788888888888776 65556666555666677666544
No 296
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=49.88 E-value=82 Score=23.86 Aligned_cols=78 Identities=15% Similarity=0.044 Sum_probs=40.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--cCH---------------HHHH
Q 047873 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--PAV---------------ETYN 384 (464)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~---------------~~~~ 384 (464)
-.|.+.+++-++... .+....---.-+|-+.+++..|...++.+.+..+. ||+ ..|+
T Consensus 45 yngEY~R~Lf~L~~l------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 45 LNGEYTRALFHLHKL------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HTTCHHHHHHHHHTC------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hcchHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 356666666555331 11111111123456677888888888887755332 221 1244
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 047873 385 ALMNGLCKHGQLKNANMLLDT 405 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~ 405 (464)
.+...|...|+.++|+..+..
T Consensus 119 l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhh
Confidence 445555555555555555544
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.83 E-value=58 Score=24.36 Aligned_cols=73 Identities=5% Similarity=0.034 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhcHHHH
Q 047873 23 HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH--YFRIPARGCRCL 100 (464)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l 100 (464)
.+++++.+.+.+...|. ..+ ..-..++..+...+..-.|.++++.+.+. +...+..+...-
T Consensus 13 ~~~~~~~~~~~L~~~g~----------------r~T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRt 75 (162)
T 4ets_A 13 YDVLLERFKKILRQGGL----------------KYT-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRT 75 (162)
T ss_dssp HHHHHHHHHHHHHHHTC----------------CCC-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----------------CCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 45666666666655443 332 23344566667777888999999999877 656666666667
Q ss_pred HHHHHcCCChhh
Q 047873 101 IDRMMRTNLPTV 112 (464)
Q Consensus 101 ~~~~~~~~~~~~ 112 (464)
+..+...|-..+
T Consensus 76 L~~L~e~Glv~~ 87 (162)
T 4ets_A 76 LNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHTTSEEE
T ss_pred HHHHHHCCCEEE
Confidence 777777776544
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.59 E-value=80 Score=23.68 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047873 364 GFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413 (464)
Q Consensus 364 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 413 (464)
+..+|..|...++-- -...|......+-..|++.+|.++|+..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344555555543322 23334444555555555555555555555544444
No 299
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.84 E-value=1.4e+02 Score=26.30 Aligned_cols=166 Identities=9% Similarity=-0.026 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C---ChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCCCCChhhH--
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR-I---PARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSPSVYVF-- 132 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 132 (464)
.+...|...|.+.|+.++..+++......-.. + .......++..+... +..+.-.++..+.++.... +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35567899999999999999999876543111 1 134456777777654 4445555565555543211 22222
Q ss_pred ----HHHHHHHHhcCChhhHHHHHHHHhhCCCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHH
Q 047873 133 ----NVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-----AVSFNTLINGHCKAKNLDEGFRLKSVMEGS--GMRPDVYT 201 (464)
Q Consensus 133 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 201 (464)
..++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3688899999999999999988876311112 233556677888999999999999877532 22233332
Q ss_pred HH----HHHHHHH-hcCChhHHHHHHHHHH
Q 047873 202 YS----ALINGLC-KENRLDDAELLLHEMC 226 (464)
Q Consensus 202 ~~----~l~~~~~-~~~~~~~a~~~~~~~~ 226 (464)
.. .-+..+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22 1223455 7899999988877654
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.51 E-value=71 Score=23.43 Aligned_cols=61 Identities=8% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (464)
+.+.|..++. ....++..+...+ .+-.|.++++.+.+.++..+..|....+..+.+.|-+.
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4455555443 3344555555555 66777777777777666556666555666666666543
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=47.28 E-value=1.6e+02 Score=26.56 Aligned_cols=33 Identities=6% Similarity=-0.095 Sum_probs=20.5
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+.+--+..|..-.+.+...|++++|.++--...
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 444444555555666777777777777765543
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.82 E-value=22 Score=28.94 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=10.4
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 047873 285 FCKEGDLESALDIRKEMIK 303 (464)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~ 303 (464)
.+..|+.+-+..+++.-..
T Consensus 232 A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCCC
Confidence 3455666665555555443
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.61 E-value=76 Score=22.59 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=15.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH
Q 047873 313 FTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445556666666666666666653
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.30 E-value=59 Score=23.69 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+.+.|..++. ....++..+...+ .-.|.++++.+.+.++..+..|....+..+.+.|-+
T Consensus 10 L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3344544443 2334444444445 566777777776666555555555555555555543
No 305
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.31 E-value=47 Score=19.79 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCcccccC-HHHHHHHHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGH-CKNGRIDMAGD-MKEARKIVDE 265 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~a~~~~~~ 265 (464)
++|.+.|.+|++..-.++.-+|...++.+ +...++-...+ +.+=.+.|+.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~ 54 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEK 54 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHH
Confidence 57777777777654444667788888777 66665543332 3333444443
No 306
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.18 E-value=1.5e+02 Score=25.48 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHh
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
..++.-|...|+.++|.+.++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 456666666777777766666653
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=44.90 E-value=65 Score=24.37 Aligned_cols=68 Identities=15% Similarity=0.020 Sum_probs=33.7
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+|-...++..|+..++.++. ...+++..+-..+-.---.+.|. .-++.++..+.+.|+.++|+..|..
T Consensus 71 Cy~klKdYkkA~~~le~il~-~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILE-GKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHT-TCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 45667778888887777762 22221111111000000012222 4455566666667777777766654
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=43.95 E-value=1.3e+02 Score=27.23 Aligned_cols=113 Identities=7% Similarity=-0.082 Sum_probs=68.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
..+.+-|+++.. +.|++--...|..-...+...|++++|..+-....+ |.-.++.+.+.+-.+-..-|+..--+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 466666666544 456666666777778888889999998877655443 3334666665555544445666667777
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 189 (464)
|..+.+.| ..+..----+++.-...|+.+-..+++.+
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 77777665 34443333445555555665555554443
No 309
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.96 E-value=23 Score=21.56 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChh
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT 111 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (464)
.++.++..+....-.++++..+++..+.| ..+...|..-++.+++..-..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 34556666666667788888888888777 566677776666665544333
No 310
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.44 E-value=1.1e+02 Score=23.31 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHhcCC
Q 047873 198 DVYTYSALINGLCKENR 214 (464)
Q Consensus 198 ~~~~~~~l~~~~~~~~~ 214 (464)
+...-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333344444444443
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.83 E-value=1.1e+02 Score=22.97 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC
Q 047873 294 ALDIRKEMIKRGIELD-NVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343 (464)
Q Consensus 294 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (464)
..++|..|..+++... ...|......+...|++.+|..+|...++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555555543322 2344444455555555555555555555544333
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.22 E-value=92 Score=22.66 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=36.7
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445566665543 334455555555 567788888877766555666666666666665544
No 313
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=40.94 E-value=79 Score=21.13 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047873 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429 (464)
Q Consensus 399 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 429 (464)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3344444444456665555555555555444
No 314
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.89 E-value=1.6e+02 Score=24.91 Aligned_cols=291 Identities=14% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHH---HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN---TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGL 209 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 209 (464)
++.+...++.|+.+-+..+++. |..++...-. +-+...+..|+.+-+.-+++. ...+..........+...
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHHH
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHH----------
Q 047873 210 CKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT---------- 279 (464)
Q Consensus 210 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 279 (464)
...+.......+.......... +..-++.+..+... .-.++++.+...|..++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~-----------~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~ 167 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVY-----------GKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHT-----------TCHHHHHHHHHTTCCTTCCCCCC-----CTTC
T ss_pred HhcccchhhHHhhhccchhhhh-ccCCCCHHHHHHHc-----------CcHHHHHHHHHcCCCcchhhccccccccccCC
Q ss_pred --HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHH--HHHHHH
Q 047873 280 --ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT--MVIDCF 355 (464)
Q Consensus 280 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~ 355 (464)
+.+...+..|+.+-+..++++.-..--..+..-.+.+..+...... .....+.+.+.+.|..++..... ..+...
T Consensus 168 g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~-~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a 246 (337)
T 4g8k_A 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-SDVEAITHLLLDHGADVNVRGERGKTPLILA 246 (337)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT-TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc-ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047873 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 435 (464)
+..|..+....++..-...--..|..-.+.|..+..... .++.+.+++.|..+|..+ .+....+.|+.+-+.
T Consensus 247 ~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~ 318 (337)
T 4g8k_A 247 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHSLVK 318 (337)
T ss_dssp HHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHH
Q ss_pred HHHHh---cCCCCchhHH
Q 047873 436 KLQSE---KGLVSDYACY 450 (464)
Q Consensus 436 ~~~~~---~~~~p~~~~~ 450 (464)
-+++. ..+.|....|
T Consensus 319 ~Ll~~GA~~d~~~p~~dw 336 (337)
T 4g8k_A 319 VLLSHGAKEDFHPPAEDW 336 (337)
T ss_dssp HHHHTTCCC---------
T ss_pred HHHHCcCCCCCCCCcccC
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.70 E-value=1.2e+02 Score=22.71 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHhhHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 047873 324 GKVVEAERMLREMLKVGLKP--DDATYTMVID-C-----FCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 373 (464)
|++-+|-++|+.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777766553333 3344555555 1 2345666677776666655
No 316
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.12 E-value=1.6e+02 Score=26.99 Aligned_cols=74 Identities=12% Similarity=-0.056 Sum_probs=31.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
|++.......++.|...|....... |.+-..|+.+.......|+.-+|+-.|-+.+... .|-+.+...|...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Confidence 3333333344445555555444442 2233444444444444444444444444444322 234444444444443
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.77 E-value=1.1e+02 Score=22.19 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=39.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3455666665543 3445556656666677888888887776556666666667777766654
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.74 E-value=95 Score=24.68 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047873 363 TGFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 413 (464)
.+..+|..|...++-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444443321 23334444444445555555555555544444343
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.67 E-value=1.1e+02 Score=22.31 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=36.6
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (464)
+.+.|..++ .....++..+...+.+-.|.++++.+.+.++..+..|....+..+.+.|-+.
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 445554433 2344556666666667778888888877666666666555666666666543
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.54 E-value=2.4e+02 Score=25.98 Aligned_cols=66 Identities=9% Similarity=0.013 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCh---hcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF-RIPA---RGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
.++|.+++.|...+.++.|..+..+..--.. .++. .-+..++..+.-.+++.+|.+.+..+.+.-+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7788888889999999999998887641100 1111 1123455666778888888888888776543
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.33 E-value=1.1e+02 Score=21.83 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--hHHHHHHHHHHHHCCCC
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK--VVEAERMLREMLKVGLK 342 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 342 (464)
...++.-|...|+.++|...++++...... ...+...+..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456788888899999999999987532221 23344445555555432 45677777777766543
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.92 E-value=1.1e+02 Score=21.89 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=36.8
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 190 MEGSGMRPDVYTYSALINGLCKEN-RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|-.
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45566665543 334555555555 5667888888887776666666666666666665554
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.74 E-value=1.2e+02 Score=22.22 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 189 VMEGSGMRPDVYTYSALINGLCKEN-RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355566665543 334555555555 5667888888887776666666666666666666654
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.66 E-value=2.3e+02 Score=25.50 Aligned_cols=55 Identities=11% Similarity=-0.002 Sum_probs=33.6
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCC
Q 047873 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR-----LDDAELLLHEMCERGL 230 (464)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 230 (464)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457788888888888888766655544444444444443 2345555555555553
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.56 E-value=93 Score=22.95 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--hHHHHHHHHHHHHCCC
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK--VVEAERMLREMLKVGL 341 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 341 (464)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 455677777788888888888877432111 22333444444444322 3456666666665553
No 326
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.53 E-value=72 Score=23.55 Aligned_cols=65 Identities=20% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD--TKTGFRLLKEMRSDGHL 377 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~ 377 (464)
....++.-|...|+.++|...++++..-.+ ....+...+..++-+.++ .+....++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345667777777777777777777642100 011223333344443222 33455556556554433
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.71 E-value=1.2e+02 Score=23.56 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=25.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhc-CCCChHHHHHHHHH
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKK-GMGSSASLFASILE 51 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 51 (464)
.+-.|.++|.+++|.++|++....+ +.++-+..+..+++
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3456889999999999999977544 34444444555554
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.46 E-value=1.2e+02 Score=22.10 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=40.9
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
+.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345566765443 344566666666677788888888887766667777666777777766543
No 329
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.12 E-value=2.2e+02 Score=24.64 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047873 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ--LKNANMLLDTMLDLGVVPDDITYNILLEGH 425 (464)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (464)
...++.-|...++.++|.+.++++..-.+. .......+..++-+.++ .+....++..+.+.|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 577888899999999999999998642211 22334444555555433 456778888888777665555544444444
Q ss_pred Hh
Q 047873 426 CK 427 (464)
Q Consensus 426 ~~ 427 (464)
..
T Consensus 299 ~~ 300 (358)
T 3eiq_C 299 NE 300 (358)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.11 E-value=92 Score=22.11 Aligned_cols=47 Identities=6% Similarity=0.010 Sum_probs=25.7
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
.++..+...+.+-.|.++++.+.+.++..+..|....+..+.+.|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34444444555666666666666655554555555555555555543
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.95 E-value=1.7e+02 Score=23.03 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=15.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
..+..|.+.|.+++|.++|++.-..
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3444566677777777777766554
No 332
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.77 E-value=85 Score=22.63 Aligned_cols=48 Identities=6% Similarity=0.031 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
..++..+...+.+-.|.++++.+.+.++..+..|....+..+.+.|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444555555555666677776666665555555555555555555543
No 333
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.27 E-value=1.6e+02 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhcCCCCc
Q 047873 418 YNILLEGHCKHG-NPEDFDKLQSEKGLVSD 446 (464)
Q Consensus 418 ~~~l~~~~~~~g-~~~~a~~~~~~~~~~p~ 446 (464)
...+...+.+.| .++.+.++++++...||
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 344444555555 34444555554444443
No 334
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.93 E-value=91 Score=24.15 Aligned_cols=52 Identities=10% Similarity=-0.037 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
...+..|.+.|.+++|.+++++....... +...-..|+..-.+.+.....++
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~~~-~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDPNS-HMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC------CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCCCC-chHHHHHHHHHHHccCCCcHHHH
Confidence 34566788999999999999997764432 33344445444444444444443
No 335
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.65 E-value=67 Score=21.17 Aligned_cols=26 Identities=15% Similarity=-0.060 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
.+......+.+.|+|++|++..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566788999999999999998876
No 336
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.12 E-value=2.5e+02 Score=24.37 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCC
Q 047873 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD---VYTYSALINGLCKENRL--DDAELLLHEMCERGLT 231 (464)
Q Consensus 166 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~ 231 (464)
....++.-|...|+.++|...++++. .|+ ......++......++. +.+-.++..+...++-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 34677888888899999998888886 343 12233333333333332 3345566666665443
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.96 E-value=1.6e+02 Score=21.99 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=35.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHh
Q 047873 390 LCKHGQLKNANMLLDTMLDLGVVP--DDITYNILLE-G-----HCKHGNPEDFDKLQSE 440 (464)
Q Consensus 390 ~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~ 440 (464)
+...|++-+|-++|+..=...-.+ +...|..||. . ..+.|+...|.+++++
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~ 100 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRT 100 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344588888888888886544344 4556666666 2 3367898888888876
No 338
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.18 E-value=1.3e+02 Score=25.80 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHHCCC
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG-GKVVEAERMLREMLKVGL 341 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 341 (464)
...++.-|...|+.++|...++++...... ...+...+..++-+. ...+.+..++..+.+.++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 345677777888888888887776432111 112222222222221 123445566666665543
No 339
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=29.90 E-value=87 Score=18.35 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=4.3
Q ss_pred HHHHHhcCChhHHH
Q 047873 66 MIVYVDLGFLDDAI 79 (464)
Q Consensus 66 ~~~~~~~g~~~~A~ 79 (464)
+..+...|++++|+
T Consensus 47 ~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 47 LSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHccchHhHhh
Confidence 34567789998886
No 340
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.40 E-value=53 Score=19.03 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=19.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHhcCC
Q 047873 403 LDTMLDLGVVPDDITYNILLEGHCKHGN--PEDFDKLQSEKGL 443 (464)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~ 443 (464)
++.+++.|+.++ ....|..+.|+ ++.|.+++.++++
T Consensus 13 lq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 13 LQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 444455555442 23344455555 7777777777653
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.94 E-value=1.2e+02 Score=21.53 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45555555566667777777777766555666666666666666654
No 342
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.83 E-value=61 Score=19.28 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=15.6
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 047873 71 DLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~ 89 (464)
..-+++.|+..|..+...+
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~ 50 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKG 50 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHcC
Confidence 3459999999999987664
No 343
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.49 E-value=1.1e+02 Score=22.03 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445566666666667777887777766666666666666666666654
No 344
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.41 E-value=2.3e+02 Score=22.48 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 111 TVTLGFYLEILDYGYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 111 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
+...++|..|...|+-. -...|......+...|++.+|.++|+.-.+++
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45556666666655432 24445556666666666666666666655553
No 345
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.21 E-value=2.9e+02 Score=23.45 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=30.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET 52 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (464)
+..-++..|.|+.|..++++-+---.+.+-...|..+...
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~ 61 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYAR 61 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTT
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHH
Confidence 4556788999999999999876555566777777777753
No 346
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=26.64 E-value=1.2e+02 Score=18.97 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=9.8
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 047873 66 MIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~ 86 (464)
...+...|++++|...|-+..
T Consensus 24 GE~L~~~g~~~~~~~hf~nAl 44 (73)
T 3ax2_A 24 GEELLAQGDYEKGVDHLTNAI 44 (73)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555444433
No 347
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.54 E-value=97 Score=19.74 Aligned_cols=25 Identities=4% Similarity=-0.118 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
-.+.+-|+..|+|+.|+..|+-+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567889999999999999999884
No 348
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.23 E-value=1.3e+02 Score=18.98 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 189 VMEGSGMRPDVYTYSALINGLCKEN-RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3445565555433 34455555443 4556677777776665555666666666666665543
No 349
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.09 E-value=2.6e+02 Score=22.63 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG-DTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
++..+-...+.++...++.+ +...+..+.. .++..+-...+.++...+ +...+...+..+.+. ++...-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHH
Confidence 35555555555555555532 3444444443 244444444555555444 223444444444432 455555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
+.++.+.|+......+.+.+.+ ++ .....+.++.+.|..
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGDK 251 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCCG
T ss_pred HHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCch
Confidence 6666666654433333333322 22 223445556666653
No 350
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.63 E-value=2.7e+02 Score=24.53 Aligned_cols=306 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 114 LGFYLEILDYGYSPS--VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.++.+.+++.|..++ .....+.+...+..|+.+-+..+++. ...+......-.+.+...+..|+.+-+.-+++.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-- 102 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN-- 102 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC--
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC
Q 047873 192 GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (464)
...+......-...+...+..|+.+.+..+++.-...... +...++.+..+... .-.++++.+.+.|.
T Consensus 103 ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~-----------g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKY-----------GKVRVAELLLERDA 170 (437)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHT-----------TCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHc-----------CCHHHHHHHHhCCC
Q ss_pred CCCHH--hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHH
Q 047873 272 NPDKI--TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYT 349 (464)
Q Consensus 272 ~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 349 (464)
.++.. .-...+...+..|+.+-+..+++.-...... +..-.+.+..+..... .++.+.+.+.|..++.....
T Consensus 171 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~ 244 (437)
T 1n11_A 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQ-----VEVARSLLQYGGSANAESVQ 244 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCC-CTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCC
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047873 350 --MVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427 (464)
Q Consensus 350 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (464)
..+...+..|+.+-...+++. ..........-.+.+...+..|..+-+..+++. ...+......-.+.+...+.
T Consensus 245 g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 320 (437)
T 1n11_A 245 GVTPLHLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASH 320 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHH
Q ss_pred cCCHHHHHHHHHhcCCCCc
Q 047873 428 HGNPEDFDKLQSEKGLVSD 446 (464)
Q Consensus 428 ~g~~~~a~~~~~~~~~~p~ 446 (464)
.|+.+-+..+++. |..++
T Consensus 321 ~g~~~~v~~Ll~~-gad~n 338 (437)
T 1n11_A 321 YGNIKLVKFLLQH-QADVN 338 (437)
T ss_dssp SSCSHHHHHHHHT-TCCTT
T ss_pred cCcHHHHHHHHhc-CCCCC
No 351
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.50 E-value=1.8e+02 Score=24.89 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=36.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPA---RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
..+..|+.+-...+++ .|..++. .... .+...+..|+.+-+ +.+++.|..++...-.+.+...+..|+
T Consensus 26 ~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 26 VAARKGQTDEVRRLIE----TGVSPTIQNRFGCT-ALHLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHTCHHHHHHHHH----TTCCTTCCCTTCCC-HHHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHH----cCCCccccCCCCCc-HHHHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHcCC
Confidence 3345677655544443 3333322 1122 23333445555433 333333433333222233444556677
Q ss_pred hhhHHHHHHHHhh
Q 047873 145 IKDAQMVFDEFGK 157 (464)
Q Consensus 145 ~~~a~~~~~~~~~ 157 (464)
.+-+..+++....
T Consensus 97 ~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 97 TDLVVALVEGAKE 109 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 6666666665433
No 352
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.00 E-value=2.9e+02 Score=22.38 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 047873 197 PDVYTYSALINGLCKENR 214 (464)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~ 214 (464)
++...-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444444
No 353
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.86 E-value=2.5e+02 Score=21.69 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=34.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh--HHHHHHHHH
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPA---RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV--FNVLMHKLC 140 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 140 (464)
+....+.|+.+-+..++ +.+..++. ..-...+...+..|+.+ +.+.+++.|..++... -...+...+
T Consensus 46 L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 117 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPLHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHLAA 117 (240)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCChhHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 44455667765444444 34322221 10112333444556654 3444455554443221 112344556
Q ss_pred hcCChhhHHHHH
Q 047873 141 KEGKIKDAQMVF 152 (464)
Q Consensus 141 ~~~~~~~a~~~~ 152 (464)
..|+.+-+..++
T Consensus 118 ~~~~~~~~~~Ll 129 (240)
T 3eu9_A 118 QFGHTSIVAYLI 129 (240)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCHHHHHHHHH
Confidence 667765444333
No 354
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.84 E-value=3e+02 Score=22.49 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=8.4
Q ss_pred HHHhCCChHHHHHHHHH
Q 047873 284 GFCKEGDLESALDIRKE 300 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~ 300 (464)
..+..|+.+-+.-+++.
T Consensus 167 ~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHc
Confidence 33455555555444443
No 355
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.91 E-value=2.8e+02 Score=21.88 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=12.3
Q ss_pred HHHhccCChHHHHHHHHHHHH
Q 047873 318 SGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~ 338 (464)
..|.+.|.+++|..++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345556666666666666554
No 356
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.62 E-value=1.3e+02 Score=17.86 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=10.9
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 047873 71 DLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~ 89 (464)
..|+.+.|+..+-.|...+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCC
T ss_pred cCCCHHHHHHHHHcCcCCC
Confidence 3456666666666554443
No 357
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.23 E-value=4.5e+02 Score=24.01 Aligned_cols=76 Identities=13% Similarity=-0.001 Sum_probs=49.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
.++........+..|...|.++....+. +...|+.|.-.....|+.-.|.-.|-+..... .|-..+...+...+.+
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 3444555566677888888888877655 67788888777777777666666555444332 4556666666665543
No 358
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=21.99 E-value=1.8e+02 Score=19.34 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=6.1
Q ss_pred cCChhHHHHHHHH
Q 047873 72 LGFLDDAIQCFRL 84 (464)
Q Consensus 72 ~g~~~~A~~~~~~ 84 (464)
+++..+-+.+|++
T Consensus 50 c~qP~~LL~i~q~ 62 (95)
T 1om2_A 50 CGQPQQLLQVLQQ 62 (95)
T ss_dssp HSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh
Confidence 3444444444443
No 359
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.85 E-value=2.8e+02 Score=20.97 Aligned_cols=170 Identities=9% Similarity=-0.047 Sum_probs=97.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 57 LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
++..+....+..+.+.|..+ +...+-.+... ++.......+..+...+..+ +...+..++. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44555556666666666533 33333333332 35555566666666666553 4444444443 25777777788
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 216 (464)
.++.+.++.+....+. .+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.|. .
T Consensus 98 ~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 98 VALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 8888888765444443 3433 356667777777777777644 4444444443 3566666677777777776 4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047873 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCK 246 (464)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (464)
++...+..+.+. ++..+-...+.++.+
T Consensus 169 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 169 RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 455555555543 244444444444433
No 360
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.46 E-value=4e+02 Score=22.66 Aligned_cols=20 Identities=5% Similarity=-0.167 Sum_probs=17.2
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 047873 16 FLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~ 35 (464)
-+...|++++|+..|+.++.
T Consensus 123 k~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 123 KNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 34679999999999999874
No 361
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.38 E-value=78 Score=23.95 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 106 (464)
.++.++..++...-.++++-.+.+....| ..+...|..-++.+++
T Consensus 113 l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 113 GLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555544 3344444444444433
No 362
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.18 E-value=3.1e+02 Score=21.33 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=40.8
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047873 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK-----VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
.+-.+++.|+-.+.+|++.| .|.-..-..++.+...-|. ...|...++.....|.+--...+...+..++.+.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPK 103 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPK 103 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc
Confidence 34567777777777777777 5443333333444444332 33444555555555644333333333333444444
Q ss_pred hHHHHHHHH
Q 047873 361 TKTGFRLLK 369 (464)
Q Consensus 361 ~~~a~~~~~ 369 (464)
...+...++
T Consensus 104 SNs~y~A~~ 112 (204)
T 2r9g_A 104 SNSAYMALD 112 (204)
T ss_dssp CCHHHHHHH
T ss_pred cHHHHHHHH
Confidence 333333333
Done!