BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047874
(941 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 259 bits (662), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 221/718 (30%), Positives = 333/718 (46%), Gaps = 107/718 (14%)
Query: 154 DVVVGEVVCLKTGDQIPADG--LFLNGHSLKVDESSMTGES-------------DRVEVD 198
D+V G++V + GD++PAD L + +L+VD+S +TGES V D
Sbjct: 145 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 204
Query: 199 EKNPFLLSGTKVTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGK 258
+KN L SGT + AG +V + G+ST G++ ++ ++TPLQ +L++ + K
Sbjct: 205 KKN-MLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSK 263
Query: 259 IGXXXXXXXXXXXXIRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXX 318
+ I +F G R G F +
Sbjct: 264 V-ISLICVAVWLINIGHFNDPVHGGSWIR---GAIYYFKIAVALAVAAI----------- 308
Query: 319 PEGLPLAVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFW 378
PEGLP +T LA +RM K +A+VR L + ET+G + IC+DKTGTLT NQM V + +
Sbjct: 309 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 368
Query: 379 LGKEAMKSDACSL---ELAQNLY----ELLQE-----------AVGLNTTGNVYNSNSLS 420
+ + + D CSL + + Y E+L+ V L T + N +SL
Sbjct: 369 I-IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD 427
Query: 421 TSEI------TGSPTEKAILSWAMIDLGMNV--DEPKQYCTVINVEAFNSEKKRSGVLMK 472
+E G TE A+ + MNV E + V A NS ++ LMK
Sbjct: 428 FNETKGVYEKVGEATETALTTLVE---KMNVFNTEVRNLSKVERANACNSVIRQ---LMK 481
Query: 473 R--------------------------INEKVFHTHWKGAAEMILVMCSHYYVKSGTIRI 506
+ + K+F KGA E ++ C+ YV+ GT R+
Sbjct: 482 KEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMF---VKGAPEGVIDRCN--YVRVGTTRV 536
Query: 507 -LDGEERTQIEKIIQEMAA--KSLRCIAFAHTKAAEA------DGQVQXXXXXXXXXXXX 557
+ G + +I +I+E +LRC+A A D +
Sbjct: 537 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVG 596
Query: 558 XXXXXDPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVI 617
DP R V +++ CR+AG+ V M+TGDN TA AI GI + ++ D A
Sbjct: 597 VVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEV-ADRAYT 655
Query: 618 EGVQFRSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRA 677
G +F L E+ AR P K +V+ L+ + A+TGDG NDAPAL+
Sbjct: 656 -GREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKK 714
Query: 678 ADIGLSMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAAL 737
A+IG++MG GT VAK +S++V+ DDNFS++V + GR +YNN+++F+++ ++ NV +
Sbjct: 715 AEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEV 773
Query: 738 VINFGAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSKPLIT 795
V F A L VQLLWVNL+ D L A AL P D+M +PP +PLI+
Sbjct: 774 VCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 831
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 259 bits (662), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 221/718 (30%), Positives = 333/718 (46%), Gaps = 107/718 (14%)
Query: 154 DVVVGEVVCLKTGDQIPADG--LFLNGHSLKVDESSMTGES-------------DRVEVD 198
D+V G++V + GD++PAD L + +L+VD+S +TGES V D
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 203
Query: 199 EKNPFLLSGTKVTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGK 258
+KN L SGT + AG +V + G+ST G++ ++ ++TPLQ +L++ + K
Sbjct: 204 KKN-MLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSK 262
Query: 259 IGXXXXXXXXXXXXIRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXX 318
+ I +F G R G F +
Sbjct: 263 V-ISLICVAVWLINIGHFNDPVHGGSWIR---GAIYYFKIAVALAVAAI----------- 307
Query: 319 PEGLPLAVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFW 378
PEGLP +T LA +RM K +A+VR L + ET+G + IC+DKTGTLT NQM V + +
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 379 LGKEAMKSDACSL---ELAQNLY----ELLQE-----------AVGLNTTGNVYNSNSLS 420
+ + + D CSL + + Y E+L+ V L T + N +SL
Sbjct: 368 I-IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD 426
Query: 421 TSEI------TGSPTEKAILSWAMIDLGMNV--DEPKQYCTVINVEAFNSEKKRSGVLMK 472
+E G TE A+ + MNV E + V A NS ++ LMK
Sbjct: 427 FNETKGVYEKVGEATETALTTLVE---KMNVFNTEVRNLSKVERANACNSVIRQ---LMK 480
Query: 473 R--------------------------INEKVFHTHWKGAAEMILVMCSHYYVKSGTIRI 506
+ + K+F KGA E ++ C+ YV+ GT R+
Sbjct: 481 KEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMF---VKGAPEGVIDRCN--YVRVGTTRV 535
Query: 507 -LDGEERTQIEKIIQEMAA--KSLRCIAFAHTKAAEA------DGQVQXXXXXXXXXXXX 557
+ G + +I +I+E +LRC+A A D +
Sbjct: 536 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVG 595
Query: 558 XXXXXDPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVI 617
DP R V +++ CR+AG+ V M+TGDN TA AI GI + ++ D A
Sbjct: 596 VVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEV-ADRAYT 654
Query: 618 EGVQFRSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRA 677
G +F L E+ AR P K +V+ L+ + A+TGDG NDAPAL+
Sbjct: 655 -GREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKK 713
Query: 678 ADIGLSMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAAL 737
A+IG++MG GT VAK +S++V+ DDNFS++V + GR +YNN+++F+++ ++ NV +
Sbjct: 714 AEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEV 772
Query: 738 VINFGAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSKPLIT 795
V F A L VQLLWVNL+ D L A AL P D+M +PP +PLI+
Sbjct: 773 VCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 220/717 (30%), Positives = 331/717 (46%), Gaps = 106/717 (14%)
Query: 154 DVVVGEVVCLKTGDQIPADG--LFLNGHSLKVDESSMTGES-------------DRVEVD 198
D+V G++V + GD++PAD L + +L+VD+S +TGES V D
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 203
Query: 199 EKNPFLLSGTKVTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGK 258
+KN L SGT + AG +V + G+ T G++ ++ ++TPLQ +L++ + K
Sbjct: 204 KKN-MLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSK 262
Query: 259 IGXXXXXXXXXXXXIRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXX 318
+ I +F G R G F +
Sbjct: 263 V-ISLICVAVWLINIGHFNDPVHGGSWIR---GAIYYFKIAVALAVAAI----------- 307
Query: 319 PEGLPLAVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFW 378
PEGLP +T LA +RM K +A+VR L + ET+G + IC+DKTGTLT NQM V + +
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 379 LGKEAMKSDACSL---ELAQNLY----ELLQE-----------AVGLNTTGNVYNSNSLS 420
+ + + D C L + + Y E+L+ V L T + N +SL
Sbjct: 368 I-IDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDSSLD 426
Query: 421 TSEI------TGSPTEKAILSWAMIDLGMNV--DEPKQYCTVINVEAFNSEKKRSGVLMK 472
+E G TE A+ + MNV E + V A NS ++ LMK
Sbjct: 427 FNETKGIYEKVGEATETALTTLVE---KMNVFNTEVRNLSKVERANACNSVIRQ---LMK 480
Query: 473 R-------------------------INEKVFHTHWKGAAEMILVMCSHYYVKSGTIRI- 506
+ + K+F KGA E ++ C+ YV+ GT R+
Sbjct: 481 KEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMF---VKGAPEGVIDRCN--YVRVGTTRVP 535
Query: 507 LDGEERTQIEKIIQEMAA--KSLRCIAFAHTKAAEA------DGQVQXXXXXXXXXXXXX 558
+ G + +I +I+E +LRC+A A D +
Sbjct: 536 MTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLTFVGV 595
Query: 559 XXXXDPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIE 618
DP R V +++ CR+AG+ V M+TGDN TA AI GI + D+ D A
Sbjct: 596 VGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDV-ADRAYT- 653
Query: 619 GVQFRSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAA 678
G +F L E+ AR P K +V+ L+ + A+TGDG NDAPAL+ A
Sbjct: 654 GREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALKKA 713
Query: 679 DIGLSMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALV 738
+IG++MG GT VAK +S++V+ DDNFS++V + GR +YNN+++F+++ ++ NV +V
Sbjct: 714 EIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVV 772
Query: 739 INFGAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSKPLIT 795
F A L VQLLWVNL+ D L A AL P D+M +PP +PLI+
Sbjct: 773 CIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLIS 829
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 220/718 (30%), Positives = 332/718 (46%), Gaps = 107/718 (14%)
Query: 154 DVVVGEVVCLKTGDQIPADG--LFLNGHSLKVDESSMTGES-------------DRVEVD 198
D+V G++V + GD++PAD L + +L+VD+S +TGES V D
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 203
Query: 199 EKNPFLLSGTKVTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGK 258
+KN L SGT + AG +V + G+ST G++ ++ ++TPLQ +L++ + K
Sbjct: 204 KKN-MLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSK 262
Query: 259 IGXXXXXXXXXXXXIRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXX 318
+ I +F G R G F +
Sbjct: 263 V-ISLICVAVWLINIGHFNDPVHGGSWIR---GAIYYFKIAVALAVAAI----------- 307
Query: 319 PEGLPLAVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFW 378
PEGLP +T LA +RM K +A+VR L + ET+G + IC+ KTGTLT NQM V + +
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMF 367
Query: 379 LGKEAMKSDACSL---ELAQNLY----ELLQE-----------AVGLNTTGNVYNSNSLS 420
+ + + D CSL + + Y E+L+ V L T + N +SL
Sbjct: 368 I-IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD 426
Query: 421 TSEI------TGSPTEKAILSWAMIDLGMNV--DEPKQYCTVINVEAFNSEKKRSGVLMK 472
+E G TE A+ + MNV E + V A NS ++ LMK
Sbjct: 427 FNETKGVYEKVGEATETALTTLVE---KMNVFNTEVRNLSKVERANACNSVIRQ---LMK 480
Query: 473 R--------------------------INEKVFHTHWKGAAEMILVMCSHYYVKSGTIRI 506
+ + K+F KGA E ++ C+ YV+ GT R+
Sbjct: 481 KEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMF---VKGAPEGVIDRCN--YVRVGTTRV 535
Query: 507 -LDGEERTQIEKIIQEMAA--KSLRCIAFAHTKAAEA------DGQVQXXXXXXXXXXXX 557
+ G + +I +I+E +LRC+A A D +
Sbjct: 536 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVG 595
Query: 558 XXXXXDPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVI 617
DP R V +++ CR+AG+ V M+TGDN TA AI GI + ++ D A
Sbjct: 596 VVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEV-ADRAYT 654
Query: 618 EGVQFRSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRA 677
G +F L E+ AR P K +V+ L+ + A+TGDG NDAPAL+
Sbjct: 655 -GREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKK 713
Query: 678 ADIGLSMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAAL 737
A+IG++MG GT VAK +S++V+ DDNFS++V + GR +YNN+++F+++ ++ NV +
Sbjct: 714 AEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEV 772
Query: 738 VINFGAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSKPLIT 795
V F A L VQLLWVNL+ D L A AL P D+M +PP +PLI+
Sbjct: 773 VCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 204/712 (28%), Positives = 330/712 (46%), Gaps = 81/712 (11%)
Query: 154 DVVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESD----RVEVDEKNPF-----L 204
+VVVG++V +K GD+IPAD ++ + KVD SS+TGES+ + +NP
Sbjct: 159 EVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIA 218
Query: 205 LSGTKVTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGKIGXXXX 264
T G +V G T G + + S +TP+ A + I +
Sbjct: 219 FFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLG 278
Query: 265 XXXXXXXXIRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXXPEGLPL 324
I +T + F+ G PEGL
Sbjct: 279 VSFFILSLILEYTW-----LEAVIFLIG--------------------IIVANVPEGLLA 313
Query: 325 AVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFWLGKEAM 384
VT+ L + KRM + + +V+ L A ET+GS +TIC+DKTGTLT N+M V W +
Sbjct: 314 TVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIH 373
Query: 385 KSD------ACSLELAQNLYELLQEAVGLNTTGNVYNSNS----LSTSEITGSPTEKAIL 434
++D S + + L GL V+ +N + + G +E A+L
Sbjct: 374 EADTTENQSGVSFDKTSATWLALSRIAGLCNRA-VFQANQENLPILKRAVAGDASESALL 432
Query: 435 SWAMIDLGMNVDEPKQYCTVINVEAFNSEKKRSGVLMKRIN--EKVFHTHWKGAAEMILV 492
+ G + ++Y ++ + FNS K + K N E KGA E IL
Sbjct: 433 KCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILD 491
Query: 493 MCSHYYVKSGTIRILDGEERTQIEKIIQEMAAKSLRCIAFAH--------TKAAEADGQV 544
CS + G + LD E + + E+ R + F H + + D
Sbjct: 492 RCSSILIH-GKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTD- 549
Query: 545 QXXXXXXXXXXXXXXXXXDPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGIL 604
DP R V AV CR+AG+ V MVTGD+ TA+AIA GI+
Sbjct: 550 DVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 609
Query: 605 N---------------PDVDLNKDEA---VIEGVQFRSLSAEE--RIAKIESIRVMARSS 644
+ P +N +A V+ G + +++E+ I K + V AR+S
Sbjct: 610 SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTS 669
Query: 645 PLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGLSMGIQGTEVAKESSDIVIMDDN 704
P KL++V+ +++G +VAVTGDG ND+PA + ADIG++MGI G++V+K+++D++++DDN
Sbjct: 670 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDN 729
Query: 705 FSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFGAAVSSGKVPLTAVQLLWVNLIM 764
F+S+VT + GR +++N++K + + LT N+ + +++ +PL V +L ++L
Sbjct: 730 FASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGT 789
Query: 765 DTLGALALATEQPTNDLMSKPPVGRSKPLITKIMWRNLISQAIYQVAILLTL 816
D + A++LA EQ +D+M + P P K++ LIS A Q+ ++ L
Sbjct: 790 DMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQIGMIQAL 838
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 203/712 (28%), Positives = 329/712 (46%), Gaps = 81/712 (11%)
Query: 154 DVVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESD----RVEVDEKNPF-----L 204
+VVVG++V +K GD+IPAD ++ + KVD SS+TGES+ + +NP
Sbjct: 153 EVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIA 212
Query: 205 LSGTKVTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGKIGXXXX 264
T G +V G T G + + S +TP+ A + I +
Sbjct: 213 FFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLG 272
Query: 265 XXXXXXXXIRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXXPEGLPL 324
I +T + F+ G PEGL
Sbjct: 273 VSFFILSLILEYTW-----LEAVIFLIG--------------------IIVANVPEGLLA 307
Query: 325 AVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFWLGKEAM 384
VT+ L + KRM + + +V+ L A ET+GS +TIC+ KTGTLT N+M V W +
Sbjct: 308 TVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIH 367
Query: 385 KSD------ACSLELAQNLYELLQEAVGLNTTGNVYNSNS----LSTSEITGSPTEKAIL 434
++D S + + L GL V+ +N + + G +E A+L
Sbjct: 368 EADTTENQSGVSFDKTSATWLALSRIAGLCNRA-VFQANQENLPILKRAVAGDASESALL 426
Query: 435 SWAMIDLGMNVDEPKQYCTVINVEAFNSEKKRSGVLMKRIN--EKVFHTHWKGAAEMILV 492
+ G + ++Y ++ + FNS K + K N E KGA E IL
Sbjct: 427 KCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILD 485
Query: 493 MCSHYYVKSGTIRILDGEERTQIEKIIQEMAAKSLRCIAFAH--------TKAAEADGQV 544
CS + G + LD E + + E+ R + F H + + D
Sbjct: 486 RCSSILIH-GKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTD- 543
Query: 545 QXXXXXXXXXXXXXXXXXDPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGIL 604
DP R V AV CR+AG+ V MVTGD+ TA+AIA GI+
Sbjct: 544 DVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 603
Query: 605 N---------------PDVDLNKDEA---VIEGVQFRSLSAEE--RIAKIESIRVMARSS 644
+ P +N +A V+ G + +++E+ I K + V AR+S
Sbjct: 604 SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTS 663
Query: 645 PLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGLSMGIQGTEVAKESSDIVIMDDN 704
P KL++V+ +++G +VAVTGDG ND+PA + ADIG++MGI G++V+K+++D++++DDN
Sbjct: 664 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDN 723
Query: 705 FSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFGAAVSSGKVPLTAVQLLWVNLIM 764
F+S+VT + GR +++N++K + + LT N+ + +++ +PL V +L ++L
Sbjct: 724 FASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGT 783
Query: 765 DTLGALALATEQPTNDLMSKPPVGRSKPLITKIMWRNLISQAIYQVAILLTL 816
D + A++LA EQ +D+M + P P K++ LIS A Q+ ++ L
Sbjct: 784 DMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQIGMIQAL 832
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 193/683 (28%), Positives = 310/683 (45%), Gaps = 82/683 (12%)
Query: 155 VVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESD----RVEVDEKNPF-----LL 205
+VVG++V +K GD++PAD L KVD SS+TGES+ E ++P
Sbjct: 195 LVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAF 254
Query: 206 SGTKVTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGKIGXXXXX 265
T G LV + G T G + S S NE+TP+ + I +
Sbjct: 255 FSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGA 314
Query: 266 XXXXXXXIRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXXPEGLPLA 325
+T F+ F ++ PEGL
Sbjct: 315 TFFIVAMCIGYT-----------FLRAMVFFMAIV--------------VAYVPEGLLAT 349
Query: 326 VTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFWLGKEAMK 385
VT+ L+ + KR+ + +V+ L A ET+GS + IC+DKTGTLT N+M V+ W
Sbjct: 350 VTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHS 409
Query: 386 SDACSLELAQNLYELLQEAVGLNTTGNVYNSNSLSTSE---------ITGSPTEKAILSW 436
+D + Q + + L + N + + + + G +E A+L +
Sbjct: 410 ADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKF 469
Query: 437 AMIDLGMNVDEPKQYCTVINVEAFNSEKKRSGVLMKRINEKVFHTH---WKGAAEMILVM 493
+ + LG + +++ V + FNS K + + + + H KGA E +L
Sbjct: 470 SELTLGNAMGYRERFPKVCEI-PFNSTNKFQ-LSIHTLEDPRDPRHVLVMKGAPERVLER 527
Query: 494 CSHYYVKSGTIRILDGEERTQIEKIIQEMAAKSLRCIAFAHTKAAEADGQVQXXXXXXXX 553
CS +K G LD + R + + R + F +E D
Sbjct: 528 CSSILIK-GQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAM 586
Query: 554 XXXXX-------XXXXDPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILN- 605
DP R V AV CR AG+ V MVTGD+ TA+AIA GI++
Sbjct: 587 NFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISE 646
Query: 606 --------------PDVDLNKDEA---VIEGVQFRSLSAEERIAKIESIR-----VMARS 643
P +N+ +A VI G+Q + + E + E++R V AR+
Sbjct: 647 GSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELV---EALRTHPEMVFART 703
Query: 644 SPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGLSMGIQGTEVAKESSDIVIMDD 703
SP KL++V+S ++ G +VAVTGDG ND+PAL+ ADIG++MGI G++ AK ++D++++DD
Sbjct: 704 SPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDD 763
Query: 704 NFSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFGAAVSSGKVPLTAVQLLWVNLI 763
NF+S+VT + GR +++N++K + + LT N+ L S +PL + +L++ L
Sbjct: 764 NFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELC 823
Query: 764 MDTLGALALATEQPTNDLMSKPP 786
D +++LA E+ +D+M P
Sbjct: 824 TDIFPSVSLAYEKAESDIMHLRP 846
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 172/551 (31%), Positives = 269/551 (48%), Gaps = 73/551 (13%)
Query: 319 PEGLPLAVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFW 378
PEGL VT+ L + KRM + + +V+ L A ET+GS +TIC+DKTGTLT N+M V W
Sbjct: 338 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 397
Query: 379 LGKEAMKSD-------------ACSLELAQNLYELLQEAVGLNTTGNVYNSNSLSTSEIT 425
+ ++D + + + L AV NV + +
Sbjct: 398 FDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNV----PILKRSVA 453
Query: 426 GSPTEKAILSWAMIDL------GMNVDEPKQYCTVINVEAFNSEKKRSGVLMKRINEKVF 479
G +E A+L I+L GM PK ++ + FNS K L NEK
Sbjct: 454 GDASESALLK--CIELCCGSVQGMRDRNPK----IVEI-PFNSTNKYQ--LSIHENEKSS 504
Query: 480 HTHW----KGAAEMILVMCSHYYVKSGTIRILDGEERTQIEKIIQEMAAKSLRCIAFAHT 535
+ + KGA E IL CS + +G L + + + E+ R + F H
Sbjct: 505 ESRYLLVMKGAPERILDRCSTILL-NGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHF 563
Query: 536 KAAE----------ADGQVQXXXXXXXXXXXXXXXXXDPCRPGVRAAVESCRNAGVNVKM 585
E AD + DP R V AV CR+AG+ V M
Sbjct: 564 ALPEDKYNEGYPFDAD---EPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIM 620
Query: 586 VTGDNVHTARAIAIECGILN---------------PDVDLNKDEA---VIEGVQFRSLSA 627
VTGD+ TA+AIA GI++ P +N +A V+ G + LS
Sbjct: 621 VTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLST 680
Query: 628 E--ERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGLSMG 685
E + I + V AR+SP KL++V+ +++G +VAVTGDG ND+PAL+ ADIG++MG
Sbjct: 681 EVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMG 740
Query: 686 IQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFGAAV 745
I G++V+K+++D++++DDNF+S+VT + GR +++N++K + + LT N+ + +
Sbjct: 741 ISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFII 800
Query: 746 SSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSKPLITKIMWRNLISQ 805
+ +PL V +L ++L D + A++LA EQ +D+M + P P K++ LIS
Sbjct: 801 GNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISM 857
Query: 806 AIYQVAILLTL 816
A Q+ ++ L
Sbjct: 858 AYGQIGMIQAL 868
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 155 VVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESD----RVEVDEKNPF 203
VV G++V +K GD+IPAD ++ H KVD SS+TGES+ E +NP
Sbjct: 190 VVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPL 242
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 140/588 (23%), Positives = 245/588 (41%), Gaps = 89/588 (15%)
Query: 155 VVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESDRVEVDEKNPF--LLSGTKVTA 212
+V G++V +K GD IPAD L G LKVD+S++TGES V K+P + SG+
Sbjct: 148 LVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVT---KHPGQEVFSGSTCKQ 204
Query: 213 GYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGKIGXXXXXXXXXXXX 272
G +V + G+ T +G+ + L + T K+ + IG
Sbjct: 205 GEIEAVVIATGVHTFFGK-----AAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEI 259
Query: 273 IRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXXPEGLPLAVTLTLAF 332
I + + +R++ G D+++ P +P +++T+A
Sbjct: 260 IVMYP------IQRRKYRDG---IDNLL-----------VLLIGGIPIAMPTVLSVTMAI 299
Query: 333 SMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFWLGKEAMKSDACSLE 392
R+ + A+ ++++A E M +C+DKTGTLTLN++ V
Sbjct: 300 GSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVD----------------- 342
Query: 393 LAQNLYELLQEAVGLNTTGNVYNSNSLSTSEITGSPTEKAILSWAMIDLGMNVDEPKQYC 452
+NL E+ + V L + + + + AM+ + + E +
Sbjct: 343 --KNLVEVFCKGV--------EKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGI 392
Query: 453 TVINVEAFNSEKKRSGVLMKRINEKVFHTHWKGAAEMILVMCSHYYVKSGTIRILDGEER 512
++ FN KR+ L +H KGA E IL + +
Sbjct: 393 REVHFLPFNPVDKRTA-LTYIDGSGNWHRVSKGAPEQILELAKA-----------SNDLS 440
Query: 513 TQIEKIIQEMAAKSLRCIAFAHTKAAEADGQVQXXXXXXXXXXXXXXXXXDPCRPGVRAA 572
++ II + A + LR +A A E + DP R
Sbjct: 441 KKVLSIIDKYAERGLRSLAVARQVVPEKTKE----SPGAPWEFVGLLPLFDPPRHDSAET 496
Query: 573 VESCRNAGVNVKMVTGDNVHTARAIAIECGI---LNPDVDL---NKDEAVIEGVQFRSLS 626
+ N GVNVKM+TGD + + G+ + P L +KD S+
Sbjct: 497 IRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKD------ANLASIP 550
Query: 627 AEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGLSMGI 686
EE I K + A P K +V+ L+++ H+V +TGDG NDAPAL+ ADIG+++
Sbjct: 551 VEELIEKADG---FAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA- 606
Query: 687 QGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNV 734
T+ A+ +SDIV+ + S +++ + R ++ ++ + + +++ +
Sbjct: 607 DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 654
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 41/196 (20%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
DP + + + +G+ + M+TGD+ TA A+A GI
Sbjct: 553 DPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK------------------ 594
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
+V+A P DK +V LK KG +VA+ GDG NDAPAL ADIG+
Sbjct: 595 ---------------KVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGI 639
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFG 742
+MG GT+VA ES+ + ++ + + R +NI++ L F NV G
Sbjct: 640 AMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNV------LG 692
Query: 743 AAVSSGKV-PLTAVQL 757
+++G + PLT + L
Sbjct: 693 VPLAAGVLYPLTGLLL 708
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 150 LSIFDVVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESDRVEVDEKNPFLLSGTK 209
+S+ +V VG+++ ++ G++IP DG G S VDES +TGE V E + ++ T
Sbjct: 239 VSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPV-AKEASAKVIGATI 296
Query: 210 VTAGYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSW 255
G M VG T ++ +S P+Q + ++ W
Sbjct: 297 NQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGW 342
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 319 PEGLPLAVTLTLAFSMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEF 377
P L LA +++ + + + +++ A E M T+ DKTGTLT K+T
Sbjct: 383 PCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI 441
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
DP R V + G+++KM+TGD V AR + + G+ + +
Sbjct: 534 DPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGG---- 589
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
+ E +E+ A P K +V+ L+Q+G++VA+TGDG NDAP+L+ AD G+
Sbjct: 590 GDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGI 649
Query: 683 SMGIQG-TEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNV 734
+ ++G ++ A+ ++DIV + +++ L+ R +++ + ++ +++ +++
Sbjct: 650 A--VEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSI 700
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 154 DVVVGEVVCLKTGDQIPADGLFLNGHS-LKVDESSMTGESDRVEVDEKNPFLLSGTKVTA 212
+VV G+++ ++ G IPADG + + L+VD+S++TGES V+ K + + + V
Sbjct: 195 EVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVD-KHKGDQVFASSAVKR 253
Query: 213 GYGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSWIGKIGXXXXXXXXXXXX 272
G F+++T+ G +T G + ++ LN IG
Sbjct: 254 GEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNG-------IGTILLILVIFTLL 306
Query: 273 IRYFTGNTRDGMGKREFVGGKTKFDDVMNSXXXXXXXXXXXXXXXXPEGLPLAVTLTLAF 332
I + + R N P GLP VT T+A
Sbjct: 307 IVWVSSFYRS------------------NPIVQILEFTLAITIIGVPVGLPAVVTTTMAV 348
Query: 333 SMKRMMKDHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTE 376
+ K A+V+KLSA E++ +C+DKTGTLT N++ + +
Sbjct: 349 GAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHD 392
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 35/172 (20%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D + + AV+ + G+ V M+TGDN +A AI+ E LN D+
Sbjct: 534 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE---LNLDL-------------- 576
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
V+A P K V+ L+ K VVA GDG NDAPAL AD+G+
Sbjct: 577 ----------------VIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGI 619
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNV 734
++G G++VA ES DIV++ D+ VV ++ R + I++ + + L NV
Sbjct: 620 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 154 DVVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESDRVEVDEKNPFLLSGTKVTAG 213
+V VG++V ++ G++IP DG+ + G S VDES ++GE V + K + T G
Sbjct: 228 EVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPV-LKSKGDEVFGATINNTG 285
Query: 214 YGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSW 255
+ T VG T +++ + + + P+Q +K+ ++
Sbjct: 286 VLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAY 327
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 35/172 (20%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D + + AV+ + G+ V M+TGDN +A AI+ E LN D+
Sbjct: 456 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE---LNLDL-------------- 498
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
V+A P K V+ L+ K VVA GDG NDAPAL AD+G+
Sbjct: 499 ----------------VIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGI 541
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQKFLQFQLTVNV 734
++G G++VA ES DIV++ D+ VV ++ R + I++ + + L NV
Sbjct: 542 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 154 DVVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESDRVEVDEKNPFLLSGTKVTAG 213
+V VG++V ++ G++IP DG+ + G S VDES ++GE V + K + T G
Sbjct: 150 EVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPV-LKSKGDEVFGATINNTG 207
Query: 214 YGFMLVTSVGMSTAWGEMMSSISHELNEETPLQARLNKLTSW 255
+ T VG T +++ + + + P+Q +K+ ++
Sbjct: 208 VLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAY 249
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 35/161 (21%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D + + AV+ + G+ V M+TGDN +A AI+ E LN D+
Sbjct: 162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE---LNLDL-------------- 204
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
V+A P K V+ L+ K VVA GDG NDAPAL AD+G+
Sbjct: 205 ----------------VIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGI 247
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQ 723
++G G++VA ES DIV++ D+ VV ++ R + I+
Sbjct: 248 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 35/161 (21%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D + + AV+ + G+ V M+TGDN +A AI+ E LN D+
Sbjct: 162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE---LNLDL-------------- 204
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
V+A P K V+ L+ K VVA GDG NDAPAL AD+G+
Sbjct: 205 ----------------VIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGI 247
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQ 723
++G G++VA ES DIV++ D+ VV ++ R + I+
Sbjct: 248 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 35/161 (21%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D RP R A+ + G+ M+TGDN A+ +A E G+ +
Sbjct: 143 DRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDD----------------- 185
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
A P +K V+ ++QK +V A+ GDG NDAPAL AD+G+
Sbjct: 186 ----------------YFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGI 228
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQ 723
++G GT+VA E++DIV++ ++ V ++ R Y+ ++
Sbjct: 229 AIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 35/161 (21%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D RP R A+ + G+ M+TGDN A+ +A E G+ +
Sbjct: 143 DRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDD----------------- 185
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
A P +K V+ ++QK +V A+ GDG NDAPAL AD+G+
Sbjct: 186 ----------------YFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGI 228
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNIQ 723
++G GT+VA E++DIV++ ++ V ++ R Y+
Sbjct: 229 AIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFH 268
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 35/154 (22%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D + + AV+ + G+ V +TGDN +A AI+ E LN D+
Sbjct: 142 DTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRE---LNLDL-------------- 184
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
V+A P K V+ L+ K VVA GDG NDAPAL AD+G+
Sbjct: 185 ----------------VIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGI 227
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGR 716
++G G++VA ES DIV++ D+ VV ++ R
Sbjct: 228 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 43/149 (28%)
Query: 565 CRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQFRS 624
+ + AV+ + G+ V +TGDN +A AI+ E LN D+
Sbjct: 23 LKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRE---LNLDL---------------- 63
Query: 625 LSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGLSM 684
V+A P K V+ L+ K VVA GDG NDAPAL AD+G+++
Sbjct: 64 --------------VIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAV 108
Query: 685 GIQGTEVAKESSDIVIMDDNFSSVVTVLR 713
G S DIV++ D+ VV ++
Sbjct: 109 G---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 34/160 (21%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D RP ++ +E +N G+ + +++GD K++ V
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGD----------------------KEDKV------ 166
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
+ LS E I + S SP DK+ +++ LKQ G+ V + GDG NDA AL AD+ +
Sbjct: 167 KELSKELNIQEYYS-----NLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNI 722
+MG G +++K +DI+++ ++ +++ +++ + + N I
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAI 260
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 34/160 (21%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D RP ++ +E +N G+ + +++GD K++ V
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGD----------------------KEDKV------ 166
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
+ LS E I + S SP DK+ +++ LKQ G+ V + GDG NDA AL AD+ +
Sbjct: 167 KELSKELNIQEYYS-----NLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNI 722
+MG G +++K +DI+++ ++ +++ +++ + + N I
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAI 260
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 34/160 (21%)
Query: 563 DPCRPGVRAAVESCRNAGVNVKMVTGDNVHTARAIAIECGILNPDVDLNKDEAVIEGVQF 622
D RP ++ +E +N G+ + +++GD K++ V
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGD----------------------KEDKV------ 166
Query: 623 RSLSAEERIAKIESIRVMARSSPLDKLLMVQSLKQKGHVVAVTGDGTNDAPALRAADIGL 682
+ LS E I + S SP DK+ +++ LKQ G+ V + GDG NDA AL AD+ +
Sbjct: 167 KELSKELNIQEYYS-----NLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 683 SMGIQGTEVAKESSDIVIMDDNFSSVVTVLRWGRCVYNNI 722
+MG G +++K +DI+++ ++ +++ +++ + + N I
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAI 260
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 150 LSIFDVVVGEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGE 191
+ + +V VG++V ++ G++IP DG+ + G S VDES ++GE
Sbjct: 25 VPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGE 65
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 319 PEGLPLAVTLTLAFSMKRMMKDHAMVRKL 347
PEGLP +T LA +RM K +A+VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 158 GEVVCLKTGDQIPADGLFLNGHSLKVDESSMTGESDRVEVDEKNPFLLSGTKVTAGY--- 214
G+++ + G + P DG + GHS+ VDES +TGE+ V K P G+ V AG
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPV---AKKP----GSTVIAGSINQ 96
Query: 215 -GFMLV--TSVGMSTAWGEMM 232
G +L+ T VG T +++
Sbjct: 97 NGSLLICATHVGADTTLSQIV 117
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 451 YCTVINVEAFNSEKKRSGVLMKRINEKVFHTHWK---GA-----AEMILVMCSHYYVKSG 502
Y N+E + EK R+ + + +E FH ++ GA A+++L CSHY +
Sbjct: 230 YIVGANIETYLLEKSRA--IRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTN 287
Query: 503 TIRILDGEERTQIEKIIQEMAAKSLRCIAFAH 534
G+ER ++ ++ SLR + F+H
Sbjct: 288 GPSSSPGQERELFQETLE-----SLRVLGFSH 314
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 666 GDGTNDAPALRAADIGLSMGIQGTEVAKESSDIV 699
GDG ND P L+AA IG++MG +E + +D V
Sbjct: 217 GDGGNDIPMLKAAGIGVAMG-NASEKVQSVADFV 249
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 666 GDGTNDAPALRAADIGLSMGIQGTEVAKESSDIV 699
GDG ND LR A IG++MG Q E K ++D V
Sbjct: 210 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYV 242
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 666 GDGTNDAPALRAADIGLSMGIQGTEVAKESSDIV 699
GDG ND LR A IG++MG Q E K ++D V
Sbjct: 210 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYV 242
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 653 QSLKQKGHVVAVTGDGTNDAPALRAADIGLSMGIQGTEVAKESSDIVIMDDNFSSVVTVL 712
+ + K + V GD ND A + ++M E KE+SDIV + +N S V VL
Sbjct: 200 ERMNWKKEEIVVFGDNENDLFMFEEAGLRVAME-NAIEKVKEASDIVTLTNNDSGVSYVL 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,482,923
Number of Sequences: 62578
Number of extensions: 857280
Number of successful extensions: 1885
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 82
length of query: 941
length of database: 14,973,337
effective HSP length: 108
effective length of query: 833
effective length of database: 8,214,913
effective search space: 6843022529
effective search space used: 6843022529
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)